Psyllid ID: psy13087

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
METEERTLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFRKAQAL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHccccccccEEEEEEEHHHHHHHHHHHHHHHHHccccccccHHHcccHHHHccccccccccccEEEccccccccHHHHHHHHHcHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHcccccccccccccccHHHccHHHHccccccccccccEEEEEEccccHHHHHHHcHHccccEEEEHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHcc
Coil and Loop (DISEMBL)
meteertlqlpqkryyrqrahsnpiadhsveyppspndmdwsplypelkdptcekkvefvdvgcgyggllvtlspmfpstlilgleirVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFRKAQAL
Flexible Loop (DISEMBL)
meteertlqlpqkryyrqrahsnpiadhsveyppSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAalrsqnkgqyenIACIRTNAMKYLPNYFRKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFRKAQAL
Low Complexity Region (SEG)
METEERTLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFRKAQAL
Disordered region (IsUnstruct)
*******************************************LYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFR*****
Disordered Region (DISOPRED)
************KRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFRKAQ**
Disordered Region (DISEMBL)
*********LPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFRKAQAL
Disordered Region (DISPRO)
******TLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFRKAQA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METEERTLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFRKAQAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
B4JLU7	247	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.788	0.542	0.633	5e-49
Q0IEN3	245	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.735	0.510	0.666	7e-49
Q6NU94	273	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.770	0.479	0.598	2e-48
B4M703	247	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.735	0.506	0.669	3e-48
B4L529	248	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.735	0.504	0.656	4e-48
B4N278	251	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.735	0.498	0.659	1e-47
Q1HPU2	236	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.752	0.542	0.661	1e-47
Q9Z120	268	tRNA (guanine-N(7)-)-meth	yes	N/A	0.747	0.473	0.622	2e-47
B4R338	256	tRNA (guanine-N(7)-)-meth	N/A	N/A	0.735	0.488	0.653	5e-47
Q2YDF1	277	tRNA (guanine-N(7)-)-meth	yes	N/A	0.747	0.458	0.601	7e-47

>sp|B4JLU7|TRMB_DROGR tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila grimshawi GN=GH24451 PE=3 SV=1

 Score =  193 bits (490), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 88/139 (63%), Positives = 106/139 (76%), Gaps = 5/139 (3%)

Query: 1   METEERTLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFV 60
           + T      LPQKR+YRQRAHSNPIADHS +YP  P D+DW  LYP + D   E++VEF 
Sbjct: 11  LSTTSAVTGLPQKRFYRQRAHSNPIADHSFDYPARPEDVDWRSLYPSIND---EQQVEFA 67

Query: 61  DVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNK--GQYENIACIRT 118
           D+GCGYGG LVTL  M+P  L +G+EIRVKVSDYV+DR+AALR +N     Y+NIACIRT
Sbjct: 68  DIGCGYGGFLVTLGEMYPKKLSIGMEIRVKVSDYVVDRIAALRLKNSETAAYQNIACIRT 127

Query: 119 NAMKYLPNYFRKAQVRRCF 137
           NAMKYLPNYFRK+Q+ + F
Sbjct: 128 NAMKYLPNYFRKSQLEKMF 146

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
Drosophila grimshawi (taxid: 7222)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 3

>sp|Q0IEN3|TRMB_AEDAE tRNA (guanine-N(7)-)-methyltransferase OS=Aedes aegypti GN=AAEL009156 PE=3 SV=1

 Score =  192 bits (489), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 86/129 (66%), Positives = 101/129 (78%), Gaps = 4/129 (3%)

Query: 9   QLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGG 68
           +LPQKR+YRQRAHSNPIADHS +YP  P+D DWS  YP + D    K+VEF D+GCGYGG
Sbjct: 20  KLPQKRFYRQRAHSNPIADHSFDYPIHPDDYDWSQHYPTIGD----KRVEFADIGCGYGG 75

Query: 69  LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYF 128
            LVTL  MFP    +G+EIRVKVSDYV+DR+ ALR  N+GQYENIACIRTNAMKYL N+F
Sbjct: 76  FLVTLGEMFPDKFAVGMEIRVKVSDYVMDRIQALRKLNEGQYENIACIRTNAMKYLTNFF 135

Query: 129 RKAQVRRCF 137
            K Q+ + F
Sbjct: 136 HKGQLEKMF 144

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Aedes aegypti (taxid: 7159)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q6NU94|TRMB_XENLA tRNA (guanine-N(7)-)-methyltransferase OS=Xenopus laevis GN=mettl1 PE=2 SV=1

 Score =  191 bits (485), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 107/147 (72%), Gaps = 16/147 (10%)

Query: 7   TLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTC------------- 53
            + LPQKRYYRQRAHSNP+ADH+ +YP  P  MDWS  YPE   P               
Sbjct: 14  AVTLPQKRYYRQRAHSNPMADHTFQYPVKPEVMDWSEYYPEFFKPLVPDCAHDDAKDLQE 73

Query: 54  ---EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY 110
              + +VEF DVGCGYGGLLV LSP+FP+TL+LGLEIRVKVSDYV DR+ +LR+ + GQY
Sbjct: 74  RKEQHQVEFADVGCGYGGLLVALSPLFPNTLMLGLEIRVKVSDYVQDRIKSLRASHLGQY 133

Query: 111 ENIACIRTNAMKYLPNYFRKAQVRRCF 137
           +NIACIR+NAMKYLPN+F+K Q+ + F
Sbjct: 134 QNIACIRSNAMKYLPNFFKKGQLSKMF 160

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B4M703|TRMB_DROVI tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila virilis GN=GJ16889 PE=3 SV=1

 Score =  190 bits (483), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 87/130 (66%), Positives = 103/130 (79%), Gaps = 5/130 (3%)

Query: 10  LPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGL 69
           LPQKR+YRQRAHSNPIADHS +YP  P D+DW  LYP +     E++VEF D+GCGYGG 
Sbjct: 20  LPQKRFYRQRAHSNPIADHSFDYPARPEDVDWRSLYPNI---GSEQQVEFADIGCGYGGF 76

Query: 70  LVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQN--KGQYENIACIRTNAMKYLPNY 127
           LVTL  MFP  L +G+EIRVKVSDYVIDR+AALR +N     Y+NIACIRTNAMKYLPNY
Sbjct: 77  LVTLGEMFPDKLAIGMEIRVKVSDYVIDRIAALRMKNAETSAYQNIACIRTNAMKYLPNY 136

Query: 128 FRKAQVRRCF 137
           F+K+Q+ + F
Sbjct: 137 FQKSQLEKMF 146

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Drosophila virilis (taxid: 7244)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B4L529|TRMB_DROMO tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila mojavensis GN=GI21651 PE=3 SV=1

 Score =  190 bits (482), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 86/131 (65%), Positives = 104/131 (79%), Gaps = 6/131 (4%)

Query: 10  LPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGL 69
           LPQKR+YRQRAHSNPIADHS  YP  P D+DW  LYP + D   +++V+F D+GCGYGG 
Sbjct: 20  LPQKRFYRQRAHSNPIADHSFNYPARPEDVDWRSLYPSMGD---DQQVQFADIGCGYGGF 76

Query: 70  LVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQ---YENIACIRTNAMKYLPN 126
           LVTL  MFP  L +G+EIRVKVSDYVIDR+AALR +N  +   Y+NIACIRTNAMKYLPN
Sbjct: 77  LVTLGEMFPEKLAIGMEIRVKVSDYVIDRIAALRLKNANEATTYQNIACIRTNAMKYLPN 136

Query: 127 YFRKAQVRRCF 137
           YF+K+Q+ + F
Sbjct: 137 YFQKSQLEKMF 147

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Drosophila mojavensis (taxid: 7230)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B4N278|TRMB_DROWI tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila willistoni GN=GK16167 PE=3 SV=1

 Score =  189 bits (479), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/132 (65%), Positives = 104/132 (78%), Gaps = 7/132 (5%)

Query: 10  LPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGL 69
           LPQKR+YRQRAHSNPIADHS +YP  P D+DWS LYP ++    +++VEF D+GCGYGG 
Sbjct: 22  LPQKRFYRQRAHSNPIADHSFDYPARPEDVDWSALYPNIQ---PDQQVEFADIGCGYGGF 78

Query: 70  LVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQ----NKGQYENIACIRTNAMKYLP 125
           LVTL  MFP  L +G+EIRVKVSDYV+DR+AALR +    N   Y+NIACIRTNAMKYLP
Sbjct: 79  LVTLGEMFPQKLSIGMEIRVKVSDYVVDRIAALRLKSGKLNGDAYKNIACIRTNAMKYLP 138

Query: 126 NYFRKAQVRRCF 137
           NYFRK Q+ + F
Sbjct: 139 NYFRKGQLEKMF 150

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Drosophila willistoni (taxid: 7260)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q1HPU2|TRMB_BOMMO tRNA (guanine-N(7)-)-methyltransferase OS=Bombyx mori PE=2 SV=1

 Score =  188 bits (477), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 86/130 (66%), Positives = 104/130 (80%), Gaps = 2/130 (1%)

Query: 8   LQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYG 67
           + LPQK+YYRQRAHSNPIADH  +YP  P+D DW+PLYP + +     +VEF+DVGCGYG
Sbjct: 1   MALPQKKYYRQRAHSNPIADHCFDYPSHPDDYDWTPLYPIISEKP--NQVEFLDVGCGYG 58

Query: 68  GLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY 127
           GLLV LSPMFPS L+LG EIRVKVSDYV DR+ ALR Q   QY+N+A +RTNAMKYLPN+
Sbjct: 59  GLLVALSPMFPSNLMLGSEIRVKVSDYVNDRIKALRVQYPDQYQNVAVLRTNAMKYLPNF 118

Query: 128 FRKAQVRRCF 137
           F K Q+++ F
Sbjct: 119 FHKGQLKKMF 128

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Bombyx mori (taxid: 7091)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q9Z120|TRMB_MOUSE tRNA (guanine-N(7)-)-methyltransferase OS=Mus musculus GN=Mettl1 PE=2 SV=1

 Score =  187 bits (476), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/143 (62%), Positives = 106/143 (74%), Gaps = 16/143 (11%)

Query: 11  PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPEL----------KDPTCEK----- 55
           PQKRYYRQRAHSNP+ADH++ YP  P +MDWS LYPE            DP  EK     
Sbjct: 10  PQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLIQNKSHDDPKDEKEKHSG 69

Query: 56  -KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIA 114
            +VEF D+GCGYGGLLV LSP+FP TLILGLEIRVKVSDYV DR+ ALR+   G ++NIA
Sbjct: 70  AQVEFADIGCGYGGLLVALSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPGGGFQNIA 129

Query: 115 CIRTNAMKYLPNYFRKAQVRRCF 137
           C+R+NAMK+LPN+FRK Q+ + F
Sbjct: 130 CLRSNAMKHLPNFFRKGQLAKMF 152

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B4R338|TRMB_DROSI tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila simulans GN=GD16394 PE=3 SV=1

 Score =  186 bits (473), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 85/130 (65%), Positives = 101/130 (77%), Gaps = 5/130 (3%)

Query: 10  LPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGL 69
           LPQKRYYRQRAHSNPIADHS +YP  P D+DW  +YP ++     ++V F DVGCGYGG 
Sbjct: 29  LPQKRYYRQRAHSNPIADHSFDYPARPEDVDWRSMYPSIQQG---QQVSFADVGCGYGGF 85

Query: 70  LVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL--RSQNKGQYENIACIRTNAMKYLPNY 127
           LVTL  MFP  L +G+EIRVKVSDYV+DR+AAL  RS + G Y+NIAC+RTNAMKYLPNY
Sbjct: 86  LVTLGEMFPEKLSIGMEIRVKVSDYVVDRIAALRRRSADTGAYQNIACLRTNAMKYLPNY 145

Query: 128 FRKAQVRRCF 137
           F K Q+ + F
Sbjct: 146 FSKGQLEKMF 155

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Drosophila simulans (taxid: 7240)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q2YDF1|TRMB_BOVIN tRNA (guanine-N(7)-)-methyltransferase OS=Bos taurus GN=METTL1 PE=2 SV=1

 Score =  186 bits (472), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 86/143 (60%), Positives = 104/143 (72%), Gaps = 16/143 (11%)

Query: 11  PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPEL----------------KDPTCE 54
           PQKRYYRQRAHSNP+ADH++ YP  P DMDWS LYPE                 K+   +
Sbjct: 17  PQKRYYRQRAHSNPMADHTLRYPVKPEDMDWSELYPEFFAPLPQNQSHDDPKDKKEKRAQ 76

Query: 55  KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIA 114
            +VEF D+GCGYGGLLV LSP+FP TLILGLEIRVKVSDYV DR+ ALR+   G ++NIA
Sbjct: 77  AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPGGGFQNIA 136

Query: 115 CIRTNAMKYLPNYFRKAQVRRCF 137
           C+R+NAMK+LPN+F K Q+ + F
Sbjct: 137 CLRSNAMKHLPNFFHKGQLTKMF 159

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
332025707	250	tRNA (guanine-N(7)-)-methyltransferase [	0.770	0.524	0.729	2e-52
91090808	245	PREDICTED: similar to tRNA (guanine-N7-)	0.764	0.530	0.712	1e-51
307170995	247	tRNA (guanine-N(7)-)-methyltransferase [	0.770	0.530	0.723	1e-51
332372792	248	unknown [Dendroctonus ponderosae]	0.8	0.548	0.673	1e-51
383854927	253	PREDICTED: tRNA (guanine-N(7)-)-methyltr	0.776	0.521	0.680	2e-50
340724877	253	PREDICTED: tRNA (guanine-N(7)-)-methyltr	0.764	0.513	0.697	5e-50
307214369	245	tRNA (guanine-N(7)-)-methyltransferase [	0.752	0.522	0.704	5e-50
346471705	254	hypothetical protein [Amblyomma maculatu	0.770	0.515	0.691	2e-49
380028227	258	PREDICTED: LOW QUALITY PROTEIN: tRNA (gu	0.764	0.503	0.680	2e-49
350422109	253	PREDICTED: tRNA (guanine-N(7)-)-methyltr	0.764	0.513	0.690	3e-49

>gi|332025707|gb|EGI65865.1| tRNA (guanine-N(7)-)-methyltransferase [Acromyrmex echinatior]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/137 (72%), Positives = 112/137 (81%), Gaps = 6/137 (4%)

Query: 7   TLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPEL----KDPTCE--KKVEFV 60
           TL LPQK+YYRQRAHSNPIADH +EYP  P  MDWS LYP+      + T E  K VEF 
Sbjct: 4   TLALPQKKYYRQRAHSNPIADHCIEYPIKPELMDWSTLYPQYFQSNDEQTLERQKHVEFA 63

Query: 61  DVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA 120
           DVGCGYGGLLVTLSPMFP  LILG+EIRVKVSDYV+DR+AALRSQN GQY+NIAC+RTNA
Sbjct: 64  DVGCGYGGLLVTLSPMFPDNLILGMEIRVKVSDYVMDRIAALRSQNPGQYQNIACLRTNA 123

Query: 121 MKYLPNYFRKAQVRRCF 137
           MKYLPNYF K Q+++ F
Sbjct: 124 MKYLPNYFYKGQLKKMF 140

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090808|ref|XP_970814.1| PREDICTED: similar to tRNA (guanine-N7-)-methyltransferase [Tribolium castaneum] gi|270013976|gb|EFA10424.1| hypothetical protein TcasGA2_TC012665 [Tribolium castaneum]

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 111/132 (84%), Gaps = 2/132 (1%)

Query: 8   LQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPEL--KDPTCEKKVEFVDVGCG 65
           + LPQKRYYRQRAHSNPIADH  +YP +P+DMDW   YPEL  KD      VEF D+GCG
Sbjct: 6   MALPQKRYYRQRAHSNPIADHCFDYPRTPDDMDWCAYYPELVNKDQGSNPVVEFADIGCG 65

Query: 66  YGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125
           YGGLL TLSP+FP TL+LG+EIRVKVSDYV+DR+AALRSQN GQY+NIAC+R+NAMKYLP
Sbjct: 66  YGGLLTTLSPLFPKTLMLGMEIRVKVSDYVMDRIAALRSQNPGQYQNIACLRSNAMKYLP 125

Query: 126 NYFRKAQVRRCF 137
           NYF+K Q+++ F
Sbjct: 126 NYFKKGQLKKMF 137

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170995|gb|EFN63058.1| tRNA (guanine-N(7)-)-methyltransferase [Camponotus floridanus]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 110/134 (82%), Gaps = 3/134 (2%)

Query: 7   TLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCE---KKVEFVDVG 63
           TL LPQK+YYRQRAHSNPIADH +EYP  P  MDWS LYP+      E   K VEF DVG
Sbjct: 4   TLALPQKKYYRQRAHSNPIADHCIEYPIKPELMDWSALYPQYFSGNTEETQKCVEFADVG 63

Query: 64  CGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY 123
           CGYGGLLV LSPMFP++LILG+EIRVKVSDYV+DR+AALRSQ  GQY+NIAC+RTNAMKY
Sbjct: 64  CGYGGLLVALSPMFPNSLILGMEIRVKVSDYVMDRIAALRSQKPGQYQNIACLRTNAMKY 123

Query: 124 LPNYFRKAQVRRCF 137
           LPNYF K Q+++ F
Sbjct: 124 LPNYFFKGQLKKMF 137

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372792|gb|AEE61538.1| unknown [Dendroctonus ponderosae]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 93/138 (67%), Positives = 115/138 (83%), Gaps = 2/138 (1%)

Query: 2   ETEERTLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEK--KVEF 59
           E ++ +L LPQKRYYRQRAHSNP+ADH  +YP SP  MDWS  YPE   P  E   KVEF
Sbjct: 3   ENDKSSLSLPQKRYYRQRAHSNPMADHCFDYPTSPERMDWSKYYPEKFKPNEEHNAKVEF 62

Query: 60  VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
           VD+GCGYGGLL+TLSPM+P +LILG+EIRVKVSDYV+DR+AALRSQ+  Q++NIAC+R+N
Sbjct: 63  VDIGCGYGGLLITLSPMYPESLILGMEIRVKVSDYVMDRIAALRSQSPSQFQNIACLRSN 122

Query: 120 AMKYLPNYFRKAQVRRCF 137
           AMKYLPN+F+K Q+++ F
Sbjct: 123 AMKYLPNFFKKGQLKKMF 140

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854927|ref|XP_003702971.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Megachile rotundata]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/141 (68%), Positives = 112/141 (79%), Gaps = 9/141 (6%)

Query: 6   RTLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYP--------ELKDPTCEKK- 56
           + L LPQK+YYRQRAHSNPIADH +EYP  P+ MDWS L+P        E K+    KK 
Sbjct: 3   KALALPQKKYYRQRAHSNPIADHCIEYPIKPDLMDWSALFPHYFSTDKEEAKENNIPKKC 62

Query: 57  VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACI 116
           VEF D+GCGYGGLLVTLS MFP  LI+G+EIRVKVSDYV+DR+AALRSQN GQY+NIAC+
Sbjct: 63  VEFADIGCGYGGLLVTLSSMFPDNLIVGMEIRVKVSDYVMDRIAALRSQNPGQYQNIACL 122

Query: 117 RTNAMKYLPNYFRKAQVRRCF 137
           RTNAMKYLPNYF K Q+++ F
Sbjct: 123 RTNAMKYLPNYFHKGQLKKMF 143

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724877|ref|XP_003400805.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Bombus terrestris]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 97/139 (69%), Positives = 112/139 (80%), Gaps = 9/139 (6%)

Query: 8   LQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYP--------ELKDPTCEKK-VE 58
           L LPQK+YYRQRAHSNPIADH +EYP  P+ M+WS LYP        E K+    +K VE
Sbjct: 5   LSLPQKKYYRQRAHSNPIADHCLEYPIKPDLMNWSSLYPFYFVTNEGESKEQNFSQKCVE 64

Query: 59  FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT 118
           FVD+GCGYGGLLVTLS MFP  LILG+EIRVKVSDYV+DR+AALRSQN GQY+NIAC+RT
Sbjct: 65  FVDIGCGYGGLLVTLSLMFPENLILGMEIRVKVSDYVMDRIAALRSQNPGQYQNIACLRT 124

Query: 119 NAMKYLPNYFRKAQVRRCF 137
           NAMKYLPNYF K Q+++ F
Sbjct: 125 NAMKYLPNYFHKGQLKKMF 143

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214369|gb|EFN89443.1| tRNA (guanine-N(7)-)-methyltransferase [Harpegnathos saltator]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 110/132 (83%), Gaps = 4/132 (3%)

Query: 10  LPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPT----CEKKVEFVDVGCG 65
           LPQKRYYRQRAHSNPIADH +EYP  P+ MDW+ LYPE  D       +K VEFVD+GCG
Sbjct: 4   LPQKRYYRQRAHSNPIADHCLEYPIKPDLMDWNTLYPEYFDADNKQETQKCVEFVDIGCG 63

Query: 66  YGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP 125
           YGGLLVTLSPMFP +LILG+EIR+KV+DYV DR+AALR Q+ GQY+NIAC+R+NAMKYLP
Sbjct: 64  YGGLLVTLSPMFPDSLILGMEIRIKVADYVRDRIAALRWQSPGQYQNIACLRSNAMKYLP 123

Query: 126 NYFRKAQVRRCF 137
           NYF K Q+++ F
Sbjct: 124 NYFHKGQLKKMF 135

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346471705|gb|AEO35697.1| hypothetical protein [Amblyomma maculatum]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/133 (69%), Positives = 108/133 (81%), Gaps = 2/133 (1%)

Query: 5   ERTLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGC 64
           E   +LPQKRYYRQRAHSNPIADH   YPP P+DMDWS  +P+    T +K+VEF DVGC
Sbjct: 4   ESEAKLPQKRYYRQRAHSNPIADHCFNYPPCPDDMDWSEYFPQ--SLTGDKQVEFADVGC 61

Query: 65  GYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL 124
           GYGGLLV LSPMFP T ++G+EIRVKVSDYV DR+ ALR ++ GQYENIACIRTNAMK+L
Sbjct: 62  GYGGLLVALSPMFPDTYMVGMEIRVKVSDYVQDRIKALRVKHPGQYENIACIRTNAMKHL 121

Query: 125 PNYFRKAQVRRCF 137
           PN+FRK Q+ + F
Sbjct: 122 PNFFRKGQLSKMF 134

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028227|ref|XP_003697809.1| PREDICTED: LOW QUALITY PROTEIN: tRNA (guanine-N(7)-)-methyltransferase-like [Apis florea]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/144 (68%), Positives = 113/144 (78%), Gaps = 14/144 (9%)

Query: 8   LQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYP--------ELKDPTCEKKVEF 59
           L LPQK+YYRQRAHSNPIADH +EYP  P+ M+W+ LYP          +D   +K VEF
Sbjct: 5   LPLPQKKYYRQRAHSNPIADHCLEYPIKPDLMNWNSLYPFYFPFNKESKEDNDAKKCVEF 64

Query: 60  VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
           VD+GCGYGGLLVTLSPMFP  LILG+EIRVKVSDYV+DR+AALRSQ  GQY+NIAC+RTN
Sbjct: 65  VDIGCGYGGLLVTLSPMFPDNLILGMEIRVKVSDYVMDRIAALRSQYPGQYQNIACLRTN 124

Query: 120 AMKYLPNYFRKAQV------RRCF 137
           AMKYLPNYF+K QV      +RCF
Sbjct: 125 AMKYLPNYFQKGQVXIKSIXKRCF 148

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422109|ref|XP_003493059.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Bombus impatiens]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 96/139 (69%), Positives = 111/139 (79%), Gaps = 9/139 (6%)

Query: 8   LQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYP--------ELKDPTCEKK-VE 58
           L LPQK+YYRQRAHSNPIADH +EYP  P+ M+W  LYP        E K+    +K VE
Sbjct: 5   LPLPQKKYYRQRAHSNPIADHCLEYPIKPDLMNWGSLYPFYFVTNEGESKEQNLSQKCVE 64

Query: 59  FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT 118
           FVD+GCGYGGLLVTLS MFP  LILG+EIRVKVSDYV+DR+AALRSQN GQY+NIAC+RT
Sbjct: 65  FVDIGCGYGGLLVTLSLMFPENLILGMEIRVKVSDYVMDRIAALRSQNPGQYQNIACLRT 124

Query: 119 NAMKYLPNYFRKAQVRRCF 137
           NAMKYLPNYF K Q+++ F
Sbjct: 125 NAMKYLPNYFHKGQLKKMF 143

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3LS77	TRMB_PICST	2, ., 1, ., 1, ., 3, 3	0.5352	0.8	0.4488	yes	N/A
Q6CE12	TRMB_YARLI	2, ., 1, ., 1, ., 3, 3	0.5882	0.7705	0.4486	yes	N/A
Q23126	TRMB_CAEEL	2, ., 1, ., 1, ., 3, 3	0.5615	0.7352	0.4882	yes	N/A
Q12009	TRMB_YEAST	2, ., 1, ., 1, ., 3, 3	0.5539	0.7882	0.4685	yes	N/A
Q74ZK8	TRMB_ASHGO	2, ., 1, ., 1, ., 3, 3	0.5629	0.7647	0.4609	yes	N/A
Q29I16	TRMB_DROPS	2, ., 1, ., 1, ., 3, 3	0.6307	0.7352	0.5060	yes	N/A
Q2YDF1	TRMB_BOVIN	2, ., 1, ., 1, ., 3, 3	0.6013	0.7470	0.4584	yes	N/A
O77263	TRMB_DROME	2, ., 1, ., 1, ., 3, 3	0.6384	0.7352	0.4882	yes	N/A
Q7Q2P7	TRMB_ANOGA	2, ., 1, ., 1, ., 3, 3	0.6176	0.7764	0.5617	yes	N/A
Q67V78	TRMB_ORYSJ	2, ., 1, ., 1, ., 3, 3	0.5035	0.7529	0.4942	yes	N/A
Q9UBP6	TRMB_HUMAN	2, ., 1, ., 1, ., 3, 3	0.5944	0.7470	0.4601	yes	N/A
A9UMM1	TRMBB_XENTR	2, ., 1, ., 1, ., 3, 3	0.6412	0.7529	0.5311	yes	N/A
Q6BX78	TRMB_DEBHA	2, ., 1, ., 1, ., 3, 3	0.5514	0.7588	0.4417	yes	N/A
Q28H76	TRMBA_XENTR	2, ., 1, ., 1, ., 3, 3	0.5714	0.7705	0.4798	yes	N/A
Q96WV1	TRMB_SCHPO	2, ., 1, ., 1, ., 3, 3	0.5259	0.7529	0.4688	yes	N/A
Q5XJ57	TRMB_DANRE	2, ., 1, ., 1, ., 3, 3	0.6412	0.7529	0.5311	yes	N/A
Q6FNR1	TRMB_CANGA	2, ., 1, ., 1, ., 3, 3	0.55	0.7941	0.4736	yes	N/A
Q6CY47	TRMB_KLULA	2, ., 1, ., 1, ., 3, 3	0.5407	0.7647	0.4676	yes	N/A
Q9Z120	TRMB_MOUSE	2, ., 1, ., 1, ., 3, 3	0.6223	0.7470	0.4738	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766
3rd Layer	2.1.1.33	0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	170
pfam02390	198	pfam02390, Methyltransf_4, Putative methyltransfer	2e-24
COG0220	227	COG0220, COG0220, Predicted S-adenosylmethionine-d	2e-20
TIGR00091	194	TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methylt	2e-12
PRK00121	202	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransfe	1e-04

>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase

 Score = 93.9 bits (234), Expect = 2e-24
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 12/100 (12%)

Query: 40  DWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99
           DW  L+        E+ + F+++GCG G  LV ++   P  L +G+EIRV   D  + ++
Sbjct: 12  DWQALFGN------EQPL-FLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKI 64

Query: 100 AALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFAN 139
            ALR       +N+  +  +AMK LPN F    +++ F N
Sbjct: 65  IALR-----GLQNLRILCGDAMKLLPNLFPDGSLQKIFIN 99

This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity. Length = 198

>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

 Score = 84.3 bits (209), Expect = 2e-20
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 14/133 (10%)

Query: 9   QLPQKRYYRQRAHSNPIADHSVEYPPSPNDM--DWSPLYPELKDPTCEKKVEFVDVGCGY 66
              ++R    +A  N + D+       P +   DWS L+     P        +++G G 
Sbjct: 6   SFVRRRLRLTKAQKNALEDNWPRLGLDPQEEPGDWSALFGNNNAPI------VLEIGFGM 59

Query: 67  GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN 126
           G  LV ++   P    LG+EIRV      + ++  L  +      N+  +  +A++ L  
Sbjct: 60  GEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK------NLRLLCGDAVEVLDY 113

Query: 127 YFRKAQVRRCFAN 139
                 + + + N
Sbjct: 114 LIPDGSLDKIYIN 126

Length = 227

>gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 40  DWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV 99
           D+S   P+       K    +++GCG G  L+ ++   P    LG+EI       ++  +
Sbjct: 1   DYSLDKPDFATVFGNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIH----TPIV--L 54

Query: 100 AALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFAN 139
           AA    NK   +N+  +  +A + L  +F    + + F N
Sbjct: 55  AANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94

This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria. It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In E. coli, this protein flanks the DNA repair protein MutY, also called micA [Protein synthesis, tRNA and rRNA base modification]. Length = 194

>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 60  VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
           +++G G G  LV ++   P    +G+E+       V     AL+   +    N+  +  +
Sbjct: 45  LEIGFGKGEFLVEMAKANPDINFIGIEVHEPG---V---GKALKKIEEEGLTNLRLLCGD 98

Query: 120 AMKYLPNYFRKAQVRR 135
           A++ L + F    + R
Sbjct: 99  AVEVLLDMFPDGSLDR 114

Length = 202

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
KOG3115|consensus	249		99.95
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.73
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.71
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.63
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.53
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.51
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.49
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.48
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.46
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.43
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.38
PRK07402	196	precorrin-6B methylase; Provisional	99.34
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.32
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.32
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.31
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.31
COG2890	280	HemK Methylase of polypeptide chain release factor	99.26
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.26
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.26
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.25
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.22
COG4122	219	Predicted O-methyltransferase [General function pr	99.21
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.21
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.21
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.2
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.2
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.18
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.18
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.18
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.18
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.17
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.14
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.14
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.13
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.13
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.13
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.13
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.12
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.12
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.12
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.12
PLN02476	278	O-methyltransferase	99.12
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.11
PLN02244	340	tocopherol O-methyltransferase	99.11
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.1
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.09
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.07
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.07
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.06
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.06
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.06
PRK06922	677	hypothetical protein; Provisional	99.06
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.05
PRK11207	197	tellurite resistance protein TehB; Provisional	99.04
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.04
PRK04266	226	fibrillarin; Provisional	99.03
COG4123	248	Predicted O-methyltransferase [General function pr	99.02
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.02
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.01
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.01
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.01
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.0
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.0
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.0
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.98
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.98
PRK04457	262	spermidine synthase; Provisional	98.98
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.97
KOG1271|consensus	227		98.97
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.96
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.96
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.96
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.96
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.95
PRK12335	287	tellurite resistance protein TehB; Provisional	98.92
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.91
PLN02672	1082	methionine S-methyltransferase	98.9
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.9
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.9
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.9
PRK00811	283	spermidine synthase; Provisional	98.89
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.89
PRK08317	241	hypothetical protein; Provisional	98.89
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.88
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.88
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.88
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.88
PRK06202	232	hypothetical protein; Provisional	98.87
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.87
PRK14967	223	putative methyltransferase; Provisional	98.86
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.86
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.86
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.85
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.85
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.84
PLN02336	475	phosphoethanolamine N-methyltransferase	98.84
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.84
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.83
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.83
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.83
TIGR03438	301	probable methyltransferase. This model represents	98.82
KOG3420|consensus	185		98.81
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.81
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.81
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.8
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.8
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.8
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.8
KOG1270|consensus	282		98.8
PRK14968	188	putative methyltransferase; Provisional	98.8
PHA03411	279	putative methyltransferase; Provisional	98.79
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.79
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.78
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.78
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.78
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.78
PLN03075	296	nicotianamine synthase; Provisional	98.77
KOG1540|consensus	296		98.77
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.77
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.77
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.75
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.75
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.74
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.73
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.73
PRK05785	226	hypothetical protein; Provisional	98.73
PLN02490	340	MPBQ/MSBQ methyltransferase	98.72
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.72
PRK01581	374	speE spermidine synthase; Validated	98.72
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.71
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.71
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.7
KOG2904|consensus	328		98.7
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.69
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.69
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.68
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.68
PLN02366	308	spermidine synthase	98.67
PTZ00146	293	fibrillarin; Provisional	98.66
PHA03412	241	putative methyltransferase; Provisional	98.65
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.65
PLN02336	475	phosphoethanolamine N-methyltransferase	98.6
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.59
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.59
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.58
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.58
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.58
PRK03612	521	spermidine synthase; Provisional	98.57
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.56
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.55
KOG1541|consensus	270		98.54
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.54
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.52
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.49
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.48
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.47
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.47
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.47
KOG2187|consensus	534		98.46
PRK04148	134	hypothetical protein; Provisional	98.44
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.41
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.39
TIGR00438	188	rrmJ cell division protein FtsJ.	98.38
PF13679	141	Methyltransf_32: Methyltransferase domain	98.36
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.36
KOG2899|consensus	288		98.3
KOG3191|consensus	209		98.28
KOG1499|consensus	346		98.27
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.25
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.23
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.21
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.14
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.14
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.13
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.11
KOG3010|consensus	261		98.09
PLN02823	336	spermine synthase	98.09
KOG2730|consensus	263		98.08
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.07
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.03
KOG0820|consensus	315		98.03
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.02
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.0
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.97
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.97
KOG1975|consensus	389		97.97
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.95
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.93
COG4076	252	Predicted RNA methylase [General function predicti	97.91
KOG1663|consensus	237		97.91
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.91
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.84
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.83
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.79
KOG4300|consensus	252		97.78
COG2520	341	Predicted methyltransferase [General function pred	97.77
KOG1661|consensus	237		97.69
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.66
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.64
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.6
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.6
KOG1500|consensus	517		97.59
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.47
PRK10742	250	putative methyltransferase; Provisional	97.44
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.44
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.41
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.41
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.38
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.38
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.37
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.37
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.36
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.24
KOG2915|consensus	314		97.19
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.16
COG2521	287	Predicted archaeal methyltransferase [General func	97.11
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.06
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.05
KOG2361|consensus	264		96.97
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	96.92
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.9
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.89
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	96.75
KOG1501|consensus	636		96.71
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.71
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.65
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.64
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.64
PRK11524	284	putative methyltransferase; Provisional	96.57
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.48
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.43
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.28
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.28
KOG4058|consensus	199		96.27
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.27
PRK13699	227	putative methylase; Provisional	96.13
PHA01634	156	hypothetical protein	96.12
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.11
KOG1122|consensus	460		96.06
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.0
COG3897	218	Predicted methyltransferase [General function pred	95.84
KOG3987|consensus	288		95.72
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	95.72
KOG4589|consensus	232		95.59
PRK00536	262	speE spermidine synthase; Provisional	95.55
COG4262	508	Predicted spermidine synthase with an N-terminal m	95.26
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	95.02
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	94.99
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	94.92
KOG3178|consensus	342		94.75
KOG1709|consensus	271		94.75
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	94.63
PLN02232	160	ubiquinone biosynthesis methyltransferase	94.3
KOG2940|consensus	325		94.27
KOG3115|consensus	249		94.19
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	94.18
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	94.06
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	93.95
KOG2651|consensus	476		93.94
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	93.7
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	93.68
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	93.52
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	93.01
KOG2078|consensus	495		92.6
KOG1331|consensus	293		92.47
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	92.27
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	91.64
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	91.61
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	90.94
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	90.8
COG0286	489	HsdM Type I restriction-modification system methyl	90.61
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	90.55
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	89.23
KOG2920|consensus	282		89.22
KOG1098|consensus	780		88.73
COG3129	292	Predicted SAM-dependent methyltransferase [General	88.42
KOG1269|consensus	364		88.11
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	86.96
KOG0024|consensus	354		86.59
KOG2912|consensus	419		86.49
KOG2198|consensus	375		86.34
COG1565	370	Uncharacterized conserved protein [Function unknow	85.84
COG0863	302	DNA modification methylase [DNA replication, recom	85.76
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	85.55
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	85.14
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	83.74
KOG1596|consensus	317		83.62
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	83.45
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	83.38
COG1568	354	Predicted methyltransferases [General function pre	83.25
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	82.84
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	81.8
PRK07102	243	short chain dehydrogenase; Provisional	81.17
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	81.12
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	80.66
PLN02668	386	indole-3-acetate carboxyl methyltransferase	80.07

>KOG3115|consensus

Probab=99.95  E-value=3.9e-29  Score=192.76  Aligned_cols=135  Identities=61%  Similarity=1.084  Sum_probs=122.1

Q ss_pred             cCCccchhhhcccCCCCcCCCCCCCCCCCCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECC
Q psy13087          9 QLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIR   88 (170)
Q Consensus         9 ~~~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis   88 (170)
                      .+|+|+|||||+|+||+++|.+.||.+|+.+||+.+|+..... +.+...+.|||||+|.+++.++..+|+..++|+||.
T Consensus        15 ~~pqKr~YRQRAHsNP~sDh~l~yPvsP~~mDWS~~yp~f~~~-~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR   93 (249)
T KOG3115|consen   15 GLPQKRYYRQRAHSNPLSDHTLEYPVSPQEMDWSKYYPDFRRA-LNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIR   93 (249)
T ss_pred             CCcHHHHHHHHhhcCCCccCcccCCCChHhCcHHHhhhhhhhh-ccccceEEeeccCccchhhhccccCccceeeeehhh
Confidence            3599999999999999999999999999999999999876432 234578999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc-CCCCCCCeEEEEcchhhhccCCCchhhhhhhHhhhcCCc
Q psy13087         89 VKVSDYVIDRVAALRSQ-NKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNS  144 (170)
Q Consensus        89 ~~~i~~a~~~~~~~~~~-~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~~~~~g  144 (170)
                      .+.-++.+++++++|.. ..+.+.|+.+++.|++.+++|+|.+++++++|+.++.|.
T Consensus        94 ~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpH  150 (249)
T KOG3115|consen   94 DKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPH  150 (249)
T ss_pred             HHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccceeecCChh
Confidence            99999999999998754 344578999999999999999999999999999988874

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.73  E-value=2.2e-18  Score=137.03  Aligned_cols=122  Identities=21%  Similarity=0.353  Sum_probs=99.9

Q ss_pred             CccchhhhcccCCCCcCCCCCCCCCCC--CCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECC
Q psy13087         11 PQKRYYRQRAHSNPIADHSVEYPPSPN--DMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIR   88 (170)
Q Consensus        11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~--~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis   88 (170)
                      .++++...+.+.+++..+...++.++.  ..+|...|....      .+.+||||||.|.+++.+|..+|+.+++|||+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~------~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~   81 (227)
T COG0220           8 VRRRLRLTKAQKNALEDNWPRLGLDPQEEPGDWSALFGNNN------APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIR   81 (227)
T ss_pred             hhhhccccHHHHHHHHhcccccCCChhhccchHHHHhCCCC------CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEe
Confidence            344455555555555443333444332  357888888753      479999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhHhhhcCCc
Q psy13087         89 VKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILNS  144 (170)
Q Consensus        89 ~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~~~~~g  144 (170)
                      ...+..|.+++.+.      +++||++++.|+...+++++++++|++||+++|+|+
T Consensus        82 ~~~v~~~l~k~~~~------~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPW  131 (227)
T COG0220          82 VPGVAKALKKIKEL------GLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPW  131 (227)
T ss_pred             hHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCC
Confidence            99999999999987      677999999999999999999999999999999997

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.71  E-value=6.1e-18  Score=131.86  Aligned_cols=95  Identities=23%  Similarity=0.438  Sum_probs=82.0

Q ss_pred             CCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy13087         37 NDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACI  116 (170)
Q Consensus        37 ~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i  116 (170)
                      +..+|...|+...       +.+||||||.|.+++.+|..+|+.+++|||++...+..|.+++...      +++|+.++
T Consensus         6 ~~~~~~~~f~~~~-------~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~------~l~Nv~~~   72 (195)
T PF02390_consen    6 EPLDWQEIFGNDN-------PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR------GLKNVRFL   72 (195)
T ss_dssp             CTTCHHHHHTSCC-------EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH------TTSSEEEE
T ss_pred             CccCHHHHcCCCC-------CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh------cccceEEE
Confidence            3478999998763       6999999999999999999999999999999999999999999887      78999999


Q ss_pred             EcchhhhccCCCchhhhhhhHhhhcCCc
Q psy13087        117 RTNAMKYLPNYFRKAQVRRCFANCILNS  144 (170)
Q Consensus       117 ~~d~~~~l~~~f~~~~l~~i~~~~~~~g  144 (170)
                      ++|+...+.+++++++++.+++++|.|.
T Consensus        73 ~~da~~~l~~~~~~~~v~~i~i~FPDPW  100 (195)
T PF02390_consen   73 RGDARELLRRLFPPGSVDRIYINFPDPW  100 (195)
T ss_dssp             ES-CTTHHHHHSTTTSEEEEEEES----
T ss_pred             EccHHHHHhhcccCCchheEEEeCCCCC
Confidence            9999999999999999999999999995

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.63  E-value=4.7e-16  Score=120.80  Aligned_cols=93  Identities=19%  Similarity=0.384  Sum_probs=79.1

Q ss_pred             CCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEc
Q psy13087         39 MDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT  118 (170)
Q Consensus        39 ~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~  118 (170)
                      .+|...|+..       .++|||||||+|.++..+|..+|+.+|+|||+++++++.|++++...      +++|++++++
T Consensus         7 ~~~~~~f~~~-------~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~------~l~ni~~i~~   73 (194)
T TIGR00091         7 PDFATVFGNK-------APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL------GLKNLHVLCG   73 (194)
T ss_pred             CCHHHHhCCC-------CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh------CCCCEEEEcc
Confidence            4687777743       47999999999999999999999999999999999999999998775      6679999999


Q ss_pred             chhhhccCCCchhhhhhhHhhhcCCc
Q psy13087        119 NAMKYLPNYFRKAQVRRCFANCILNS  144 (170)
Q Consensus       119 d~~~~l~~~f~~~~l~~i~~~~~~~g  144 (170)
                      |+.+.+..+++.++++.++++++.|.
T Consensus        74 d~~~~~~~~~~~~~~d~v~~~~pdpw   99 (194)
T TIGR00091        74 DANELLDKFFPDGSLSKVFLNFPDPW   99 (194)
T ss_pred             CHHHHHHhhCCCCceeEEEEECCCcC
Confidence            99887666666678888888776653

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.53  E-value=2e-14  Score=122.14  Aligned_cols=82  Identities=21%  Similarity=0.361  Sum_probs=74.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      ++.+||||||+|.++..+|..+|+.+++|||+++.++..|.+++...      +++||+++++|+...+ ..+++++++.
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~------gL~NV~~i~~DA~~ll-~~~~~~s~D~  195 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL------NLKNLLIINYDARLLL-ELLPSNSVEK  195 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHhh-hhCCCCceeE
Confidence            57999999999999999999999999999999999999999998775      6789999999998755 4678899999


Q ss_pred             hHhhhcCCc
Q psy13087        136 CFANCILNS  144 (170)
Q Consensus       136 i~~~~~~~g  144 (170)
                      |+.+++.|+
T Consensus       196 I~lnFPdPW  204 (390)
T PRK14121        196 IFVHFPVPW  204 (390)
T ss_pred             EEEeCCCCc
Confidence            999988875

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.51  E-value=3.4e-14  Score=111.08  Aligned_cols=95  Identities=19%  Similarity=0.381  Sum_probs=75.3

Q ss_pred             CCCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy13087         36 PNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIAC  115 (170)
Q Consensus        36 ~~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~  115 (170)
                      +....|...+...       +.+|||||||+|.++..++..+|+.+|+|||+|+++++.|+++++..      +.+|+.+
T Consensus        28 ~~~~~~~~~~~~~-------~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~------~~~~v~~   94 (202)
T PRK00121         28 PAPLDWAELFGND-------APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE------GLTNLRL   94 (202)
T ss_pred             CCCCCHHHHcCCC-------CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc------CCCCEEE
Confidence            4456788877763       47999999999999999999988889999999999999999998764      5678999


Q ss_pred             EEcchhhhccCCCchhhhhhhHhhhcCC
Q psy13087        116 IRTNAMKYLPNYFRKAQVRRCFANCILN  143 (170)
Q Consensus       116 i~~d~~~~l~~~f~~~~l~~i~~~~~~~  143 (170)
                      +++|+...++..++++.++.++.+++.|
T Consensus        95 ~~~d~~~~l~~~~~~~~~D~V~~~~~~p  122 (202)
T PRK00121         95 LCGDAVEVLLDMFPDGSLDRIYLNFPDP  122 (202)
T ss_pred             EecCHHHHHHHHcCccccceEEEECCCC
Confidence            9999944444445566666666655443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.49  E-value=2e-13  Score=95.92  Aligned_cols=60  Identities=27%  Similarity=0.569  Sum_probs=54.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcch
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA  120 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~  120 (170)
                      +.+|||||||+|.+++.+++.+++.+++|||+|+++++.|++++.+.     +..+||+++++|+
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~i~~~~~d~   61 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE-----GLSDRITFVQGDA   61 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT-----TTTTTEEEEESCC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEECcc
Confidence            67999999999999999999888999999999999999999998553     3458999999999

...

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.48  E-value=1.5e-13  Score=112.12  Aligned_cols=110  Identities=17%  Similarity=0.354  Sum_probs=81.1

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhccCC----
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYLPNY----  127 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l~~~----  127 (170)
                      ++++++|||||||+|.+++.+|+.+ +++|+|+++|+++.+.+++++++.      ++. ||+++..|..++-+.+    
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~------gl~~~v~v~l~d~rd~~e~fDrIv  142 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAAR------GLEDNVEVRLQDYRDFEEPFDRIV  142 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHc------CCCcccEEEeccccccccccceee
Confidence            6779999999999999999999998 789999999999999999999886      444 8999888876654321    


Q ss_pred             -------Cch----hhhhhhHhhhcCCccccchhhhcc------cccccChhhhhhcccC
Q psy13087        128 -------FRK----AQVRRCFANCILNSQYENIACIRT------NAMKYLPNYFRKAQAL  170 (170)
Q Consensus       128 -------f~~----~~l~~i~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~  170 (170)
                             |..    .-+.+++. +++|||..-+..|..      +...+...+++||+.|
T Consensus       143 SvgmfEhvg~~~~~~ff~~~~~-~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~l  201 (283)
T COG2230         143 SVGMFEHVGKENYDDFFKKVYA-LLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGEL  201 (283)
T ss_pred             ehhhHHHhCcccHHHHHHHHHh-hcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcC
Confidence                   333    23444444 566676544433333      3456677777777653

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.46  E-value=2.4e-13  Score=101.24  Aligned_cols=76  Identities=26%  Similarity=0.541  Sum_probs=61.2

Q ss_pred             CCCeEEEEcCccchHHHHHh-hhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLS-PMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQV  133 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la-~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l  133 (170)
                      ++.+|||+|||+|.++..++ ..+|..+++|+|+|++|++.|+++++..      +++|++++++|+.+ ++..++ +.+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~------~~~ni~~~~~d~~~-l~~~~~-~~~   74 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL------GLDNIEFIQGDIED-LPQELE-EKF   74 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT------TSTTEEEEESBTTC-GCGCSS-TTE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc------cccccceEEeehhc-cccccC-CCe
Confidence            46899999999999999999 5677889999999999999999998876      67799999999998 542122 444


Q ss_pred             hhhHh
Q psy13087        134 RRCFA  138 (170)
Q Consensus       134 ~~i~~  138 (170)
                      |.++.
T Consensus        75 D~I~~   79 (152)
T PF13847_consen   75 DIIIS   79 (152)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            44443

...

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.43  E-value=2.5e-13  Score=108.69  Aligned_cols=62  Identities=18%  Similarity=0.344  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||||.+++.+++..+..+|+|+|+|+.|++.|+++....      +..+++++++||+.
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~------~~~~i~fv~~dAe~  112 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK------GVQNVEFVVGDAEN  112 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc------CccceEEEEechhh
Confidence            378999999999999999999998889999999999999999998775      44569999999986

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.38  E-value=6.9e-13  Score=116.69  Aligned_cols=82  Identities=16%  Similarity=0.246  Sum_probs=74.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      ++.+||||||.|.+++.+|..+|+.+++|||++...+..|.+++...      ++.|+.++..|+. .+.++|+++++++
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~------~l~N~~~~~~~~~-~~~~~~~~~sv~~  420 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ------NITNFLLFPNNLD-LILNDLPNNSLDG  420 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc------CCCeEEEEcCCHH-HHHHhcCcccccE
Confidence            58999999999999999999999999999999999999999888765      6889999888765 4667799999999


Q ss_pred             hHhhhcCCc
Q psy13087        136 CFANCILNS  144 (170)
Q Consensus       136 i~~~~~~~g  144 (170)
                      +|+++|.|+
T Consensus       421 i~i~FPDPW  429 (506)
T PRK01544        421 IYILFPDPW  429 (506)
T ss_pred             EEEECCCCC
Confidence            999999997

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.34  E-value=7.3e-12  Score=97.14  Aligned_cols=63  Identities=17%  Similarity=0.294  Sum_probs=56.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||+|||+|.++..+++..++..|+|+|+++++++.|++++++.      +.++++++.+|+.+.
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~------~~~~v~~~~~d~~~~  102 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF------GVKNVEVIEGSAPEC  102 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCCeEEEECchHHH
Confidence            367999999999999999998888889999999999999999999875      567899999998653

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.32  E-value=4.8e-12  Score=97.53  Aligned_cols=62  Identities=21%  Similarity=0.254  Sum_probs=56.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.+++.+|...|+.+|+|||+|+.|++.+++++++.      +.+|++++++|+.+.
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~------~~~~i~~i~~d~~~~  104 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL------GLNNVEIVNGRAEDF  104 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh------CCCCeEEEecchhhc
Confidence            57999999999999999998888889999999999999999998775      567899999999874

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.32  E-value=6.2e-12  Score=97.48  Aligned_cols=62  Identities=19%  Similarity=0.230  Sum_probs=56.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.+++.+|...|+.+|+|+|++++|++.|+++++..      ++++++++++|+.+.
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~------~l~~i~~~~~d~~~~  107 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL------GLKNVTVVHGRAEEF  107 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc------CCCCEEEEeccHhhC
Confidence            57999999999999999999888899999999999999999998886      567899999998874

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.31  E-value=7.4e-12  Score=96.31  Aligned_cols=67  Identities=18%  Similarity=0.320  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY  127 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~  127 (170)
                      ++.+++|||||+|.+++++|..+|..++++||.++++++..++|+++.      +.+|+.++.+++.+.|++.
T Consensus        34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f------g~~n~~vv~g~Ap~~L~~~  100 (187)
T COG2242          34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF------GVDNLEVVEGDAPEALPDL  100 (187)
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh------CCCcEEEEeccchHhhcCC
Confidence            478999999999999999999999999999999999999999999998      5899999999999988754

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.31  E-value=2.9e-12  Score=97.52  Aligned_cols=74  Identities=18%  Similarity=0.342  Sum_probs=62.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      ..+|||+|||+|.+++.+++..|..+|+++|+++.+++.|+++++..      ..++++++.+|..+.++    ++.+|.
T Consensus        32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n------~~~~v~~~~~d~~~~~~----~~~fD~  101 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN------GLENVEVVQSDLFEALP----DGKFDL  101 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT------TCTTEEEEESSTTTTCC----TTCEEE
T ss_pred             CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc------Ccccccccccccccccc----ccceeE
Confidence            57999999999999999999999889999999999999999999875      66669999999876553    445555


Q ss_pred             hHhh
Q psy13087        136 CFAN  139 (170)
Q Consensus       136 i~~~  139 (170)
                      |+.|
T Consensus       102 Iv~N  105 (170)
T PF05175_consen  102 IVSN  105 (170)
T ss_dssp             EEE-
T ss_pred             EEEc
Confidence            5554

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=4e-12  Score=104.22  Aligned_cols=100  Identities=10%  Similarity=0.125  Sum_probs=73.0

Q ss_pred             CccchhhhcccCCCCcCCCCCCCCCCCCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHH
Q psy13087         11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK   90 (170)
Q Consensus        11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~   90 (170)
                      +.++|+..+..+++...  ++.|.+....++........      ..+|||||||+|.+++.+|...|+.+|+|+|+|++
T Consensus        74 g~~~f~gl~~~v~~~vl--iPr~dTe~Lve~~l~~~~~~------~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~  145 (280)
T COG2890          74 GSAEFGGLRFKVDEGVL--IPRPDTELLVEAALALLLQL------DKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPD  145 (280)
T ss_pred             ccCeecceeeeeCCCce--ecCCchHHHHHHHHHhhhhc------CCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHH
Confidence            55778888888877542  35555543333322111111      12799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         91 VSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        91 ~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +++.|++|++.+      ++.++.++++|....+
T Consensus       146 Al~~A~~Na~~~------~l~~~~~~~~dlf~~~  173 (280)
T COG2890         146 ALALARENAERN------GLVRVLVVQSDLFEPL  173 (280)
T ss_pred             HHHHHHHHHHHc------CCccEEEEeeeccccc
Confidence            999999999886      4467777777766543

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.26  E-value=1.6e-11  Score=100.40  Aligned_cols=65  Identities=17%  Similarity=0.432  Sum_probs=49.8

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++++.+|||||||+|.+++.+|+.+ +++|+||.+|++.++.|++++++.     +..+++.+..+|..+.
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~-----gl~~~v~v~~~D~~~~  124 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREA-----GLEDRVEVRLQDYRDL  124 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS-----TSSSTEEEEES-GGG-
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEEeecccc
Confidence            4568999999999999999999998 689999999999999999999876     3334688888887764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=1.6e-11  Score=94.46  Aligned_cols=92  Identities=15%  Similarity=0.268  Sum_probs=70.6

Q ss_pred             hcccCCCCcCCCCCCCCCCCCC---Cccc-cCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHH
Q psy13087         18 QRAHSNPIADHSVEYPPSPNDM---DWSP-LYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSD   93 (170)
Q Consensus        18 ~r~~~~p~~~~~~~~p~~~~~~---~w~~-~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~   93 (170)
                      .+.+.||... ..||++.+...   -|.. ..+.+.      +..|+|+|||||.+++.++...+ ..|+|||+++++++
T Consensus        11 l~~f~~p~~~-LEQY~Tp~~~Aa~il~~a~~~g~l~------g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~e   82 (198)
T COG2263          11 LKGFPNPKLG-LEQYRTPAPLAAYILWVAYLRGDLE------GKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALE   82 (198)
T ss_pred             hcCCCCCCcc-ceecCCChHHHHHHHHHHHHcCCcC------CCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHH
Confidence            3456666643 23888877643   3433 334442      67899999999999999998765 59999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         94 YVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        94 ~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      .+++|+.++       ..+|.|+.+|+.++-
T Consensus        83 i~r~N~~~l-------~g~v~f~~~dv~~~~  106 (198)
T COG2263          83 IARANAEEL-------LGDVEFVVADVSDFR  106 (198)
T ss_pred             HHHHHHHhh-------CCceEEEEcchhhcC
Confidence            999999874       468999999998754

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.25  E-value=1.6e-11  Score=98.17  Aligned_cols=63  Identities=19%  Similarity=0.354  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||+|||||.++..+++.. |+..|+|+|+|+.|++.|++++...      +..||.++++|+.+.
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~------~~~~i~~v~~da~~l  110 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE------GLQNIEFVQGDAEDL  110 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT------T--SEEEEE-BTTB-
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh------CCCCeeEEEcCHHHh
Confidence            46899999999999999999875 5679999999999999999999875      556999999999863

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.22  E-value=6.6e-12  Score=98.63  Aligned_cols=108  Identities=17%  Similarity=0.253  Sum_probs=89.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCc---hh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFR---KA  131 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~---~~  131 (170)
                      ..+||||||++|..++++|...| +.+++.+|++++..+.|+++++..     +..++|+++.+|+.+.++.+..   .+
T Consensus        46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a-----g~~~~I~~~~gda~~~l~~l~~~~~~~  120 (205)
T PF01596_consen   46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA-----GLDDRIEVIEGDALEVLPELANDGEEG  120 (205)
T ss_dssp             -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-----TGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred             CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-----CCCCcEEEEEeccHhhHHHHHhccCCC
Confidence            47999999999999999999876 579999999999999999999876     2235799999999998875543   34


Q ss_pred             hhhhhHhhhcCCccccc-----hhhhcccccccChhhhhhccc
Q psy13087        132 QVRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKAQA  169 (170)
Q Consensus       132 ~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~  169 (170)
                      .+|.||+-.. ++.|..     +.+++.+++...+|.+.+|.|
T Consensus       121 ~fD~VFiDa~-K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V  162 (205)
T PF01596_consen  121 QFDFVFIDAD-KRNYLEYFEKALPLLRPGGVIIADNVLWRGSV  162 (205)
T ss_dssp             SEEEEEEEST-GGGHHHHHHHHHHHEEEEEEEEEETTTGGGGG
T ss_pred             ceeEEEEccc-ccchhhHHHHHhhhccCCeEEEEcccccccee
Confidence            7999999554 466544     589999999999999999876

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.21  E-value=2.6e-11  Score=95.94  Aligned_cols=108  Identities=11%  Similarity=0.198  Sum_probs=93.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC-eEEEE-cchhhhccCCCchh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN-IACIR-TNAMKYLPNYFRKA  131 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~i~-~d~~~~l~~~f~~~  131 (170)
                      ...+|||||++.|..+++||...| +.+++.+|+++++++.|++++++.      +..+ |.++. +|+.+.+.. +..+
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a------g~~~~i~~~~~gdal~~l~~-~~~~  131 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA------GVDDRIELLLGGDALDVLSR-LLDG  131 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc------CCcceEEEEecCcHHHHHHh-ccCC
Confidence            368999999999999999999998 789999999999999999999987      4444 88888 599998877 6778


Q ss_pred             hhhhhHhhhcCCccccc-----hhhhcccccccChhhhhhcccC
Q psy13087        132 QVRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKAQAL  170 (170)
Q Consensus       132 ~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~  170 (170)
                      ++|.+|+- ..++.|.+     +.+++.++....+|++++|.|+
T Consensus       132 ~fDliFID-adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~  174 (219)
T COG4122         132 SFDLVFID-ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVA  174 (219)
T ss_pred             CccEEEEe-CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccC
Confidence            99999994 55577765     6889999999999999998663

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.21  E-value=9e-11  Score=83.32  Aligned_cols=62  Identities=15%  Similarity=0.252  Sum_probs=54.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..+++..|..+|+|+|+++.+++.++++++..      +.+++.++.+|+...
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~   81 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF------GVSNIVIVEGDAPEA   81 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh------CCCceEEEecccccc
Confidence            57999999999999999999988889999999999999999998775      556889888887643

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.21  E-value=1e-10  Score=92.00  Aligned_cols=64  Identities=16%  Similarity=0.275  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||||||+|.++..+|+..+ +.+|+|+|+++++++.|++++++.      +++|++++.+|+.+.+
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~------g~~~v~~~~~d~~~~~  141 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL------GLDNVIVIVGDGTQGW  141 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC------CCCCeEEEECCcccCC
Confidence            468999999999999999999864 457999999999999999999875      5689999999987643

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.20  E-value=2.4e-11  Score=99.80  Aligned_cols=112  Identities=12%  Similarity=0.134  Sum_probs=76.1

Q ss_pred             CccchhhhcccCCCCcCCCCCCCCCCCCCCcccc-CCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCH
Q psy13087         11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPL-YPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRV   89 (170)
Q Consensus        11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~-~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~   89 (170)
                      +.++|+.....++|..  .++.|.+.+.+.+... ....     .+..+|||+|||+|.+++.++...|+.+++|+|+|+
T Consensus        83 g~~~f~g~~f~v~~~v--lipr~~te~lv~~~l~~~~~~-----~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~  155 (284)
T TIGR03533        83 NEAWFAGLEFYVDERV--LIPRSPIAELIEDGFAPWLEP-----EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISP  155 (284)
T ss_pred             CCCeecCcEEEECCCC--ccCCCchHHHHHHHHHHHhcc-----CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCH
Confidence            5667777666666543  2233333222222111 1111     124689999999999999999999888999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhccCCCchhhhhhhHhh
Q psy13087         90 KVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLPNYFRKAQVRRCFAN  139 (170)
Q Consensus        90 ~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~~~f~~~~l~~i~~~  139 (170)
                      .+++.|++|++..      ++ ++|.++.+|+.+.++    .+.+|.|+.|
T Consensus       156 ~al~~A~~n~~~~------~~~~~i~~~~~D~~~~~~----~~~fD~Iv~N  196 (284)
T TIGR03533       156 DALAVAEINIERH------GLEDRVTLIQSDLFAALP----GRKYDLIVSN  196 (284)
T ss_pred             HHHHHHHHHHHHc------CCCCcEEEEECchhhccC----CCCccEEEEC
Confidence            9999999998875      44 479999999865432    3345666554

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.20  E-value=1.3e-10  Score=89.42  Aligned_cols=61  Identities=21%  Similarity=0.300  Sum_probs=54.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.+++.+++.+|+.+|+|+|+++++++.|+++++..      ...+++++.+|+..
T Consensus        32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~------~~~~i~~~~~d~~~   92 (187)
T PRK08287         32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF------GCGNIDIIPGEAPI   92 (187)
T ss_pred             CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh------CCCCeEEEecCchh
Confidence            57999999999999999999988889999999999999999998765      45679998888754

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.18  E-value=7.6e-11  Score=93.18  Aligned_cols=62  Identities=21%  Similarity=0.362  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+++.. +..+|+|+|+++.+++.|+++.+..      ..+++.++.+|+..
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~  107 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA------GLHNVELVHGNAME  107 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEEechhc
Confidence            36799999999999999999875 5679999999999999999998764      45789999988865

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.18  E-value=2.7e-11  Score=103.88  Aligned_cols=111  Identities=14%  Similarity=0.153  Sum_probs=75.4

Q ss_pred             CccchhhhcccCCCCcCCCCCCCCCCCCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHH
Q psy13087         11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK   90 (170)
Q Consensus        11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~   90 (170)
                      +.+.||..+...+|..  .++.|.++...++.....       .++.+|||||||+|.+++.++...|+.+++|+|+|++
T Consensus       216 G~~~F~G~~f~V~p~v--LIPRpeTE~LVe~aL~~l-------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~  286 (423)
T PRK14966        216 GVREFYGRRFAVNPNV--LIPRPETEHLVEAVLARL-------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPP  286 (423)
T ss_pred             eeeeecCcEEEeCCCc--cCCCccHHHHHHHhhhcc-------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHH
Confidence            5666777766666643  123343332223222111       1246899999999999999999888899999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhHhh
Q psy13087         91 VSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFAN  139 (170)
Q Consensus        91 ~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~  139 (170)
                      +++.|++|++..      + .+++++++|+.+..  ....+.+|.|+.|
T Consensus       287 ALe~AreNa~~~------g-~rV~fi~gDl~e~~--l~~~~~FDLIVSN  326 (423)
T PRK14966        287 ALETARKNAADL------G-ARVEFAHGSWFDTD--MPSEGKWDIIVSN  326 (423)
T ss_pred             HHHHHHHHHHHc------C-CcEEEEEcchhccc--cccCCCccEEEEC
Confidence            999999998764      3 37999999986431  1112346666654

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.18  E-value=2.8e-11  Score=96.81  Aligned_cols=109  Identities=15%  Similarity=0.219  Sum_probs=80.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCC---ch
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYF---RK  130 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f---~~  130 (170)
                      +..+|||||||+|..++++|...+ +.+++++|+++++++.|++++++.     +..++|+++.+|+.+.++.+.   +.
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-----gl~~~i~~~~gda~~~L~~l~~~~~~  142 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-----GVDHKINFIQSDALSALDQLLNNDPK  142 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEEccHHHHHHHHHhCCCC
Confidence            357999999999999999998754 579999999999999999999876     233579999999998765432   23


Q ss_pred             hhhhhhHhhhcCCccccc-----hhhhcccccccChhhhhhccc
Q psy13087        131 AQVRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKAQA  169 (170)
Q Consensus       131 ~~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~  169 (170)
                      +.+|.+|+...+ ..|..     +.+++.++....+|.+..|.|
T Consensus       143 ~~fD~VfiDa~k-~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v  185 (234)
T PLN02781        143 PEFDFAFVDADK-PNYVHFHEQLLKLVKVGGIIAFDNTLWFGFV  185 (234)
T ss_pred             CCCCEEEECCCH-HHHHHHHHHHHHhcCCCeEEEEEcCCcCCee
Confidence            567777775433 33222     466666777777776665543

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.18  E-value=3.4e-11  Score=99.90  Aligned_cols=111  Identities=11%  Similarity=0.115  Sum_probs=76.4

Q ss_pred             CccchhhhcccCCCCcCCCCCCCCCCCCCCcccc-CCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCH
Q psy13087         11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPL-YPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRV   89 (170)
Q Consensus        11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~-~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~   89 (170)
                      +.+.||.....++|..  .++.|.....+.+... +....     ...+|||+|||+|.+++.++..+|+.+|+|+|+|+
T Consensus        95 g~~~F~g~~f~v~~~v--lipr~~te~lv~~~l~~~~~~~-----~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~  167 (307)
T PRK11805         95 NEAWFCGLEFYVDERV--LVPRSPIAELIEDGFAPWLEDP-----PVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISP  167 (307)
T ss_pred             CcceEcCcEEEECCCC--cCCCCchHHHHHHHHHHHhccC-----CCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCH
Confidence            6677777777776643  2344433322232211 11110     12589999999999999999999989999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhccCCCchhhhhhhHh
Q psy13087         90 KVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLPNYFRKAQVRRCFA  138 (170)
Q Consensus        90 ~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~~~f~~~~l~~i~~  138 (170)
                      .+++.|++|++..      ++ ++|.++++|+.+.++    .+.+|.|+.
T Consensus       168 ~al~~A~~n~~~~------~l~~~i~~~~~D~~~~l~----~~~fDlIvs  207 (307)
T PRK11805        168 DALAVAEINIERH------GLEDRVTLIESDLFAALP----GRRYDLIVS  207 (307)
T ss_pred             HHHHHHHHHHHHh------CCCCcEEEEECchhhhCC----CCCccEEEE
Confidence            9999999999875      43 469999999865443    234555554

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.17  E-value=3.1e-11  Score=106.34  Aligned_cols=118  Identities=14%  Similarity=0.191  Sum_probs=85.0

Q ss_pred             CccchhhhcccCCCCcCCCCCCCCCCCCCCccccCCC-------------------CCCCCCCCCCeEEEEcCccchHHH
Q psy13087         11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPE-------------------LKDPTCEKKVEFVDVGCGYGGLLV   71 (170)
Q Consensus        11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~~~~-------------------~~~~~~~~~~~vLDiGCG~G~~~~   71 (170)
                      +.+.||.....++|..  .++.|.++...+|......                   .......+..+|||||||+|.+++
T Consensus        77 G~~~F~g~~f~V~~~V--LIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai  154 (506)
T PRK01544         77 GVKEFYSREFIVNKHV--LIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAI  154 (506)
T ss_pred             CcCEEcCcEEEeCCCc--ccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHH
Confidence            7899999999999875  3588888766666432110                   000000124689999999999999


Q ss_pred             HHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhHhh
Q psy13087         72 TLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFAN  139 (170)
Q Consensus        72 ~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~  139 (170)
                      .++..+|+.+|+|+|+|+.+++.|++|++..     +..+++.++++|+...++    .+.+|.|+.|
T Consensus       155 ~la~~~p~~~v~avDis~~al~~A~~N~~~~-----~l~~~v~~~~~D~~~~~~----~~~fDlIvsN  213 (506)
T PRK01544        155 SLLCELPNANVIATDISLDAIEVAKSNAIKY-----EVTDRIQIIHSNWFENIE----KQKFDFIVSN  213 (506)
T ss_pred             HHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-----CCccceeeeecchhhhCc----CCCccEEEEC
Confidence            9999989899999999999999999998764     222479999999765432    2345555543

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.14  E-value=3.7e-10  Score=91.62  Aligned_cols=65  Identities=23%  Similarity=0.330  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+++.. +..+|+|+|+|++|++.|+++......   ...+++.++++|+..
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~  138 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATD  138 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEccccc
Confidence            36799999999999999999875 556899999999999999887542100   134689999998875

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.14  E-value=8.3e-11  Score=83.19  Aligned_cols=79  Identities=15%  Similarity=0.206  Sum_probs=64.0

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhh
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRC  136 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i  136 (170)
                      .+|||+|||+|.+++.+++.. ..+++|+|+++.+++.|+.++...     +..++++++.+|+.+.. ..+..+.+|.|
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~-----~~~~~~~~~~~D~~~~~-~~~~~~~~D~I   74 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN-----GLDDRVEVIVGDARDLP-EPLPDGKFDLI   74 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC-----TTTTTEEEEESHHHHHH-HTCTTT-EEEE
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc-----cCCceEEEEECchhhch-hhccCceeEEE
Confidence            589999999999999999997 679999999999999999998775     23367999999998765 34566788888


Q ss_pred             HhhhcC
Q psy13087        137 FANCIL  142 (170)
Q Consensus       137 ~~~~~~  142 (170)
                      +.+-|-
T Consensus        75 v~npP~   80 (117)
T PF13659_consen   75 VTNPPY   80 (117)
T ss_dssp             EE--ST
T ss_pred             EECCCC
Confidence            876443

...

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.13  E-value=1.1e-10  Score=95.81  Aligned_cols=101  Identities=17%  Similarity=0.267  Sum_probs=69.9

Q ss_pred             CccchhhhcccCCCCcCCCCCCCCCCCCCCcccc-CCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCH
Q psy13087         11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPL-YPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRV   89 (170)
Q Consensus        11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~-~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~   89 (170)
                      +.+.||......+|..  .++.|.+.....+... +...     .+..+|||+|||+|.+++.++..+|+.+|+|+|+|+
T Consensus        76 g~~~f~g~~f~v~~~v--liPr~ete~lv~~~l~~~~~~-----~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~  148 (284)
T TIGR00536        76 GSKEFYGLEFFVNEHV--LIPRPETEELVEKALASLISQ-----NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISP  148 (284)
T ss_pred             CcceEcCeEEEECCCC--cCCCCccHHHHHHHHHHhhhc-----CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH
Confidence            4566666666665542  2344443332222211 1111     012589999999999999999999888999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhc
Q psy13087         90 KVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYL  124 (170)
Q Consensus        90 ~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l  124 (170)
                      ++++.|++|++..      ++. ++.++++|+.+.+
T Consensus       149 ~al~~a~~n~~~~------~~~~~v~~~~~d~~~~~  178 (284)
T TIGR00536       149 DALAVAEENAEKN------QLEHRVEFIQSNLFEPL  178 (284)
T ss_pred             HHHHHHHHHHHHc------CCCCcEEEEECchhccC
Confidence            9999999998775      444 4999999876543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.13  E-value=8.9e-11  Score=92.22  Aligned_cols=58  Identities=19%  Similarity=0.343  Sum_probs=51.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ...|+|||||+|..+..++.++|+..++|||.|++|++.|+++           ++|++|.++|+...-
T Consensus        31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----------lp~~~f~~aDl~~w~   88 (257)
T COG4106          31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----------LPDATFEEADLRTWK   88 (257)
T ss_pred             cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----------CCCCceecccHhhcC
Confidence            4789999999999999999999999999999999999999655           478999999887654

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.13  E-value=2.5e-10  Score=91.77  Aligned_cols=64  Identities=11%  Similarity=0.208  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhh--CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPM--FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~--~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|..+..+++.  .|+.+|+|+|+|+.|++.|+++++..     +...++.++.+|+.+.
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-----~~~~~v~~~~~d~~~~  121 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-----KAPTPVDVIEGDIRDI  121 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEeCChhhC
Confidence            3679999999999999999884  57889999999999999999998764     2234799999888753

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.13  E-value=5.5e-10  Score=87.45  Aligned_cols=64  Identities=16%  Similarity=0.255  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l  124 (170)
                      ++.+|||||||+|.++..+++..+ ..+|+|+|+++++++.|+++++..      +. .+++++.+|+.+.+
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~------~~~~~v~~~~~d~~~~~  137 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL------GYWGVVEVYHGDGKRGL  137 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCcEEEEECCcccCC
Confidence            468999999999999999998764 458999999999999999998765      44 36999999987644

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.12  E-value=1.9e-10  Score=79.92  Aligned_cols=57  Identities=23%  Similarity=0.499  Sum_probs=46.3

Q ss_pred             EEEEcCccchHHHHHhhhC---CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         59 FVDVGCGYGGLLVTLSPMF---PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        59 vLDiGCG~G~~~~~la~~~---p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      |||+|||+|..+..++..+   |..+++|+|+|++|++.++++....      +. +++++++|+.+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~------~~-~~~~~~~D~~~   60 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED------GP-KVRFVQADARD   60 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT------TT-TSEEEESCTTC
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc------CC-ceEEEECCHhH
Confidence            7999999999999999986   4479999999999999999998663      33 79999999876

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.12  E-value=7.1e-11  Score=94.07  Aligned_cols=74  Identities=16%  Similarity=0.302  Sum_probs=61.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      +.+|||+|||+|.++..++..+|...++|+|+++.+++.|++++...      +.+++.++.+|+...+    +.+.+|.
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~----~~~~fD~  157 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL------GLDNVTFLQSDWFEPL----PGGKFDL  157 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhccC----cCCceeE
Confidence            45899999999999999999988889999999999999999998765      5678999999987533    3455666


Q ss_pred             hHhh
Q psy13087        136 CFAN  139 (170)
Q Consensus       136 i~~~  139 (170)
                      |+.+
T Consensus       158 Vi~n  161 (251)
T TIGR03534       158 IVSN  161 (251)
T ss_pred             EEEC
Confidence            6553

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.12  E-value=8.8e-11  Score=92.11  Aligned_cols=56  Identities=21%  Similarity=0.322  Sum_probs=46.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++...|+..++|||+|++|++.|+++.           +++.++++|+.+
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----------~~~~~~~~d~~~   99 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----------PNINIIQGSLFD   99 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----------CCCcEEEeeccC
Confidence            56899999999999999998878889999999999999998763           345566666554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00740 methyltransferase, putative

Probab=99.12  E-value=3.3e-10  Score=90.37  Aligned_cols=63  Identities=14%  Similarity=0.269  Sum_probs=53.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..+++.+  |+++++|+|+|+.|++.|+++++..     +...+++++++|+...
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~-----~~~~~v~~~~~d~~~~  118 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-----HSEIPVEILCNDIRHV  118 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEECChhhC
Confidence            5799999999999999999864  6889999999999999999998664     2235789998888764

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02476 O-methyltransferase

Probab=99.12  E-value=7.9e-11  Score=96.35  Aligned_cols=109  Identities=12%  Similarity=0.157  Sum_probs=89.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCc---h
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFR---K  130 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~---~  130 (170)
                      +..+|||||||+|..++++|...| +..++++|++++.++.|++++++.     +..++|+++.+|+.+.|+.+..   .
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a-----Gl~~~I~li~GdA~e~L~~l~~~~~~  192 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA-----GVSHKVNVKHGLAAESLKSMIQNGEG  192 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEEcCHHHHHHHHHhcccC
Confidence            367999999999999999998765 568999999999999999999886     3335899999999998865421   3


Q ss_pred             hhhhhhHhhhcCCccccc-----hhhhcccccccChhhhhhccc
Q psy13087        131 AQVRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKAQA  169 (170)
Q Consensus       131 ~~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~  169 (170)
                      +.+|.+|+- ..++.|.+     +.+++.++....+|++..|.|
T Consensus       193 ~~FD~VFID-a~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V  235 (278)
T PLN02476        193 SSYDFAFVD-ADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRV  235 (278)
T ss_pred             CCCCEEEEC-CCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcc
Confidence            578888884 44466655     678889999999999888875

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.11  E-value=6.3e-10  Score=87.62  Aligned_cols=63  Identities=14%  Similarity=0.257  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++..+ +.+|+|+|+++++++.|+++++..      +..|+.++.+|+...
T Consensus        76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~------g~~~v~~~~gd~~~~  139 (212)
T PRK13942         76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL------GYDNVEVIVGDGTLG  139 (212)
T ss_pred             CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEECCcccC
Confidence            478999999999999999998753 468999999999999999999875      567899999998653

>PLN02244 tocopherol O-methyltransferase

Probab=99.11  E-value=2.2e-10  Score=96.28  Aligned_cols=62  Identities=23%  Similarity=0.368  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+++.+ +.+|+|||+|+.+++.|+++++..     +..+++.++.+|+..
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~-----g~~~~v~~~~~D~~~  179 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQ-----GLSDKVSFQVADALN  179 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEEcCccc
Confidence            46799999999999999999987 578999999999999999987764     223579999998865

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.10  E-value=6e-10  Score=89.78  Aligned_cols=61  Identities=16%  Similarity=0.272  Sum_probs=52.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++..  +.+|+|+|+|++|++.|+++++..     +..++++++++|+.+.
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~-----g~~~~v~~~~~d~~~l  105 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAK-----GVSDNMQFIHCAAQDI  105 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhc-----CCccceEEEEcCHHHH
Confidence            579999999999999999987  468999999999999999988764     2336799999888653

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.09  E-value=5.6e-10  Score=89.87  Aligned_cols=42  Identities=26%  Similarity=0.447  Sum_probs=39.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +.+|||||||+|.++..++..+|+.+|+|+|+|+.|++.|++
T Consensus        30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~   71 (255)
T PRK14103         30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE   71 (255)
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh
Confidence            579999999999999999999888899999999999999864

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.07  E-value=8e-10  Score=88.86  Aligned_cols=56  Identities=20%  Similarity=0.326  Sum_probs=47.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++..+|+.+|+|+|+|+.|++.|+++.           +++.++.+|+..
T Consensus        32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----------~~~~~~~~d~~~   87 (258)
T PRK01683         32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----------PDCQFVEADIAS   87 (258)
T ss_pred             CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------CCCeEEECchhc
Confidence            57999999999999999999998889999999999999998763           356666666654

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.07  E-value=2.4e-10  Score=88.40  Aligned_cols=71  Identities=23%  Similarity=0.322  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQV  133 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l  133 (170)
                      +++.+|||||||.|.++..|... .++...|||++++.+..+.++             .+.++++|+.+.|.+ |+++++
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~-f~d~sF   76 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLAD-FPDQSF   76 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhh-CCCCCc
Confidence            34789999999999999999885 588999999999998887665             367899999988864 666777


Q ss_pred             hhhHhh
Q psy13087        134 RRCFAN  139 (170)
Q Consensus       134 ~~i~~~  139 (170)
                      |.+...
T Consensus        77 D~VIls   82 (193)
T PF07021_consen   77 DYVILS   82 (193)
T ss_pred             cEEehH
Confidence            766553

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.06  E-value=1.7e-10  Score=93.33  Aligned_cols=73  Identities=14%  Similarity=0.256  Sum_probs=58.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      +.+|||+|||+|.++..++...|...++|+|+++.+++.|+++++.      ....++.++.+|+...+.    .+.+|.
T Consensus       109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~------~~~~~i~~~~~d~~~~~~----~~~fD~  178 (275)
T PRK09328        109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH------GLGARVEFLQGDWFEPLP----GGRFDL  178 (275)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh------CCCCcEEEEEccccCcCC----CCceeE
Confidence            5789999999999999999999888999999999999999999872      234689999998854322    344555


Q ss_pred             hHh
Q psy13087        136 CFA  138 (170)
Q Consensus       136 i~~  138 (170)
                      ++.
T Consensus       179 Iv~  181 (275)
T PRK09328        179 IVS  181 (275)
T ss_pred             EEE
Confidence            544

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.06  E-value=2.4e-10  Score=97.31  Aligned_cols=65  Identities=20%  Similarity=0.197  Sum_probs=53.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ..+|||||||+|.+++.+++.+|+.+|+++|+|+.+++.|+++++....   ....++.++..|+...
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~---~~~~~v~~~~~D~l~~  293 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP---EALDRCEFMINNALSG  293 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc---ccCceEEEEEcccccc
Confidence            3589999999999999999999999999999999999999999876410   1124788888877543

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.06  E-value=1.3e-10  Score=93.77  Aligned_cols=73  Identities=18%  Similarity=0.220  Sum_probs=57.2

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhh
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRC  136 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i  136 (170)
                      .+|||+|||+|.+++.++...++.+++|+|+|+.+++.|++|++..         +++++++|+.+.++... .+.+|.+
T Consensus        88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~---------~~~~~~~D~~~~l~~~~-~~~fDlV  157 (251)
T TIGR03704        88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA---------GGTVHEGDLYDALPTAL-RGRVDIL  157 (251)
T ss_pred             CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---------CCEEEEeechhhcchhc-CCCEeEE
Confidence            5899999999999999999888889999999999999999998653         25788888776543211 1345555


Q ss_pred             Hhh
Q psy13087        137 FAN  139 (170)
Q Consensus       137 ~~~  139 (170)
                      +.|
T Consensus       158 v~N  160 (251)
T TIGR03704       158 AAN  160 (251)
T ss_pred             EEC
Confidence            554

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK06922 hypothetical protein; Provisional

Probab=99.06  E-value=3.5e-10  Score=101.33  Aligned_cols=73  Identities=25%  Similarity=0.320  Sum_probs=57.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      +.+|||||||+|.++..++..+|+.+|+|+|+|+.|++.|+++....      + .++.++.+|+.. +++.|+++++|.
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~------g-~~ie~I~gDa~d-Lp~~fedeSFDv  490 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE------G-RSWNVIKGDAIN-LSSSFEKESVDT  490 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc------C-CCeEEEEcchHh-CccccCCCCEEE
Confidence            57999999999999999999999999999999999999999886542      2 467888888765 343444444443


Q ss_pred             h
Q psy13087        136 C  136 (170)
Q Consensus       136 i  136 (170)
                      +
T Consensus       491 V  491 (677)
T PRK06922        491 I  491 (677)
T ss_pred             E
Confidence            3

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.05  E-value=1.1e-09  Score=91.42  Aligned_cols=62  Identities=24%  Similarity=0.297  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++.  +.+|+|||+++++++.|+++.+..     ....+|.++.+|+.+.
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~-----~~~~~i~~~~~dae~l  192 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMD-----PVTSTIEYLCTTAEKL  192 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhc-----CcccceeEEecCHHHh
Confidence            3568999999999999999875  568999999999999999876442     1224788888887653

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.04  E-value=8.6e-10  Score=85.84  Aligned_cols=59  Identities=15%  Similarity=0.124  Sum_probs=50.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||+|||+|.++..+|+.  +.+|+|+|+|+.|++.|+++++..      +..++.++..|+..
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~------~~~~v~~~~~d~~~   89 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAE------NLDNLHTAVVDLNN   89 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHc------CCCcceEEecChhh
Confidence            468999999999999999987  468999999999999999987764      55678888777654

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.04  E-value=1.1e-09  Score=85.13  Aligned_cols=85  Identities=13%  Similarity=0.155  Sum_probs=60.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc-----------
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL-----------  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l-----------  124 (170)
                      +.++||||||.|+.+++||+.  +..|+++|+|+.+++.+++.+++.      +++ |+....|...+.           
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~------~l~-i~~~~~Dl~~~~~~~~yD~I~st  101 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEE------GLD-IRTRVADLNDFDFPEEYDFIVST  101 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHT------T-T-EEEEE-BGCCBS-TTTEEEEEEE
T ss_pred             CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhc------Cce-eEEEEecchhccccCCcCEEEEE
Confidence            479999999999999999998  678999999999999998877654      443 777777765421           


Q ss_pred             --cCCCchhhhhhhHhh---hcCCccccch
Q psy13087        125 --PNYFRKAQVRRCFAN---CILNSQYENI  149 (170)
Q Consensus       125 --~~~f~~~~l~~i~~~---~~~~g~~~~~  149 (170)
                        -.++.++.+..++.+   +.+||||.-+
T Consensus       102 ~v~~fL~~~~~~~i~~~m~~~~~pGG~~li  131 (192)
T PF03848_consen  102 VVFMFLQRELRPQIIENMKAATKPGGYNLI  131 (192)
T ss_dssp             SSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence              134566665555444   5678887554

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK04266 fibrillarin; Provisional

Probab=99.03  E-value=5.7e-10  Score=88.91  Aligned_cols=60  Identities=17%  Similarity=0.228  Sum_probs=51.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||+|||+|.++..+|...+...|+|+|+++.|++.+.+++++.        +||.++.+|+..
T Consensus        72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------~nv~~i~~D~~~  131 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------KNIIPILADARK  131 (226)
T ss_pred             CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------CCcEEEECCCCC
Confidence            468999999999999999999886568999999999999888776542        688988888753

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.02  E-value=4.3e-10  Score=90.44  Aligned_cols=78  Identities=24%  Similarity=0.299  Sum_probs=63.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      ..+|||||||+|.+++.+|.+.+.+.++|||+++.+++.|+++++..     .-.++|+++++|+..+..+. ...++|.
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln-----~l~~ri~v~~~Di~~~~~~~-~~~~fD~  118 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN-----PLEERIQVIEADIKEFLKAL-VFASFDL  118 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC-----cchhceeEehhhHHHhhhcc-cccccCE
Confidence            47999999999999999999988899999999999999999999763     23467999999999876432 2225666


Q ss_pred             hHhh
Q psy13087        136 CFAN  139 (170)
Q Consensus       136 i~~~  139 (170)
                      |+.|
T Consensus       119 Ii~N  122 (248)
T COG4123         119 IICN  122 (248)
T ss_pred             EEeC
Confidence            6554

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.02  E-value=2.2e-09  Score=84.45  Aligned_cols=60  Identities=28%  Similarity=0.497  Sum_probs=51.6

Q ss_pred             eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +|||||||+|.++..+++.+|+.+++|+|+|+++++.|++++...     +..+++.++.+|+..
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~-----gl~~~i~~~~~d~~~   61 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL-----GLQGRIRIFYRDSAK   61 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCcceEEEeccccc
Confidence            699999999999999999988889999999999999999998764     233568888888743

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.01  E-value=4e-10  Score=90.86  Aligned_cols=108  Identities=15%  Similarity=0.190  Sum_probs=89.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCc----h
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFR----K  130 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~----~  130 (170)
                      ..+|||||+++|..++++|...| +.+++.+|++++..+.|++++++.     +..++|+++.+|+.+.|+....    .
T Consensus        80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-----g~~~~I~~~~G~a~e~L~~l~~~~~~~  154 (247)
T PLN02589         80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-----GVAHKIDFREGPALPVLDQMIEDGKYH  154 (247)
T ss_pred             CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----CCCCceEEEeccHHHHHHHHHhccccC
Confidence            57999999999999999998764 679999999999999999999886     3457899999999998876533    3


Q ss_pred             hhhhhhHhhhcCCccccc-----hhhhcccccccChhhhhhccc
Q psy13087        131 AQVRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKAQA  169 (170)
Q Consensus       131 ~~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~  169 (170)
                      +.+|.+|+- ..+..|.+     +.+++.+++...||++..|.|
T Consensus       155 ~~fD~iFiD-adK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v  197 (247)
T PLN02589        155 GTFDFIFVD-ADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSV  197 (247)
T ss_pred             CcccEEEec-CCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcc
Confidence            578988885 34455543     688999999999999887765

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.01  E-value=7.9e-10  Score=95.90  Aligned_cols=76  Identities=12%  Similarity=0.203  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC-Cchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY-FRKAQV  133 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~-f~~~~l  133 (170)
                      ++.+|||+|||+|.+++.+|+..  ..|+|+|+|++|++.|++|++..      +.+|++++.+|+.+.+... +..+.+
T Consensus       297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~f  368 (443)
T PRK13168        297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRN------GLDNVTFYHANLEEDFTDQPWALGGF  368 (443)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEeChHHhhhhhhhhcCCC
Confidence            46799999999999999999885  57999999999999999998765      5678999999998765322 333456


Q ss_pred             hhhHh
Q psy13087        134 RRCFA  138 (170)
Q Consensus       134 ~~i~~  138 (170)
                      |.++.
T Consensus       369 D~Vi~  373 (443)
T PRK13168        369 DKVLL  373 (443)
T ss_pred             CEEEE
Confidence            66655

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.01  E-value=1.8e-09  Score=83.95  Aligned_cols=65  Identities=23%  Similarity=0.365  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||+|||+|.+++.+|+.. +..+|+++|+++++++.|+++++..     +..+++.++.+|+.+.+
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~-----g~~~~v~~~~~d~~~~l  105 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF-----GVLNNIVLIKGEAPEIL  105 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-----CCCCCeEEEEechhhhH
Confidence            46899999999999999998864 4568999999999999999998875     22468999999987644

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.00  E-value=1e-09  Score=73.90  Aligned_cols=67  Identities=22%  Similarity=0.466  Sum_probs=50.9

Q ss_pred             EEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhHhh
Q psy13087         60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFAN  139 (170)
Q Consensus        60 LDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~  139 (170)
                      ||||||+|..+..+++. +..+++|+|+++++++.++++...         .++.++.+|+... +  |+++++|.++..
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l-~--~~~~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDL-P--FPDNSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSS-S--S-TT-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhC-c--cccccccccccc
Confidence            89999999999999998 778999999999999999988633         4577888887764 2  556677666543

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.00  E-value=7.5e-10  Score=83.98  Aligned_cols=58  Identities=22%  Similarity=0.397  Sum_probs=50.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++..  ..+++|+|+++.+++.++++...        .+|++++++|+.+.
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~   71 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKF   71 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcC
Confidence            578999999999999999988  46899999999999999888632        35899999999875

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.00  E-value=8.6e-10  Score=91.70  Aligned_cols=74  Identities=16%  Similarity=0.247  Sum_probs=60.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      +.+|||+|||+|.+++.+|..  ...|+|+|+++.+++.|+++++..      +++|++++.+|+.++...  ..+.+|.
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~------~l~~v~~~~~D~~~~~~~--~~~~~D~  243 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAEL------GLTNVQFQALDSTQFATA--QGEVPDL  243 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEcCHHHHHHh--cCCCCeE
Confidence            579999999999999999985  468999999999999999999875      567899999999876532  1224666


Q ss_pred             hHhh
Q psy13087        136 CFAN  139 (170)
Q Consensus       136 i~~~  139 (170)
                      ++.+
T Consensus       244 Vv~d  247 (315)
T PRK03522        244 VLVN  247 (315)
T ss_pred             EEEC
Confidence            6664

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.98  E-value=4.6e-09  Score=87.79  Aligned_cols=64  Identities=19%  Similarity=0.275  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||||||+|.++..+|+..+. ..|+|+|+++++++.|+++++..      +.+|+.++.+|+...+
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~------g~~nV~~i~gD~~~~~  144 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL------GIENVIFVCGDGYYGV  144 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCChhhcc
Confidence            4689999999999999999998753 47999999999999999998875      5688999999987654

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.98  E-value=1.5e-09  Score=88.08  Aligned_cols=63  Identities=13%  Similarity=0.158  Sum_probs=53.1

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      .++.+|||||||+|..++.+++.. +..+|+|+|+++.+++.|+++.+..      +.+++.++.+|+..
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~------g~~~v~~~~~d~~~  139 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA------GYTNVEFRLGEIEA  139 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc------CCCCEEEEEcchhh
Confidence            457899999999999888877764 4558999999999999999988765      56789998888765

>PRK04457 spermidine synthase; Provisional

Probab=98.98  E-value=5.9e-10  Score=90.59  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=54.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..+++.+|+.++++||+++++++.|+++....     ...++++++.+|+.+++
T Consensus        67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-----~~~~rv~v~~~Da~~~l  130 (262)
T PRK04457         67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP-----ENGERFEVIEADGAEYI  130 (262)
T ss_pred             CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC-----CCCCceEEEECCHHHHH
Confidence            46899999999999999999999999999999999999999886432     12368999999987765

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.97  E-value=2.1e-09  Score=85.66  Aligned_cols=45  Identities=22%  Similarity=0.335  Sum_probs=40.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      .+.+|||||||-|.++..||+.  +.+|+|+|+++++|+.|+....+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e  103 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALE  103 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhh
Confidence            3689999999999999999998  47899999999999999987654

>KOG1271|consensus

Probab=98.97  E-value=8.1e-10  Score=84.86  Aligned_cols=86  Identities=16%  Similarity=0.195  Sum_probs=64.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC-eEEEEcchhhhccCCCchhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN-IACIRTNAMKYLPNYFRKAQVR  134 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~i~~d~~~~l~~~f~~~~l~  134 (170)
                      .++|||+|||.|.++..|++..=...++|||.|+++++.|+..++..      +++| |+|.+.|+...  . |-+++++
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~------~~~n~I~f~q~DI~~~--~-~~~~qfd  138 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD------GFSNEIRFQQLDITDP--D-FLSGQFD  138 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc------CCCcceeEEEeeccCC--c-cccccee
Confidence            35999999999999999999743346999999999999987766654      6677 99999988752  2 2233343


Q ss_pred             hhHhhhcCCccccchhhhcc
Q psy13087        135 RCFANCILNSQYENIACIRT  154 (170)
Q Consensus       135 ~i~~~~~~~g~~~~~~~~~~  154 (170)
                      .    ...+|.++.|++.+.
T Consensus       139 l----vlDKGT~DAisLs~d  154 (227)
T KOG1271|consen  139 L----VLDKGTLDAISLSPD  154 (227)
T ss_pred             E----EeecCceeeeecCCC
Confidence            3    345677777776643

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.96  E-value=1.2e-09  Score=94.27  Aligned_cols=77  Identities=14%  Similarity=0.201  Sum_probs=62.2

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC-Cchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY-FRKAQV  133 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~-f~~~~l  133 (170)
                      ++.+|||+|||+|.+++.+|+..  ..|+|+|+++++++.|++|++..      +++|++++.+|+.+.++.+ +..+.+
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~------~~~nv~~~~~d~~~~l~~~~~~~~~~  363 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELN------GIANVEFLAGTLETVLPKQPWAGQIP  363 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHh------CCCceEEEeCCHHHHHHHHHhcCCCC
Confidence            45799999999999999999874  47999999999999999998775      6789999999998765432 223345


Q ss_pred             hhhHhh
Q psy13087        134 RRCFAN  139 (170)
Q Consensus       134 ~~i~~~  139 (170)
                      |.++..
T Consensus       364 D~vi~d  369 (431)
T TIGR00479       364 DVLLLD  369 (431)
T ss_pred             CEEEEC
Confidence            666653

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.96  E-value=3.2e-09  Score=83.51  Aligned_cols=60  Identities=17%  Similarity=0.311  Sum_probs=50.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++..  +..++|+|+|++|+..|+++....     +...++.+..+|+..
T Consensus        56 ~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~-----~~~~~i~~~~~d~~~  115 (219)
T TIGR02021        56 GKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGR-----DVAGNVEFEVNDLLS  115 (219)
T ss_pred             CCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEECChhh
Confidence            689999999999999999986  458999999999999999988653     122478998888764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.96  E-value=1.7e-09  Score=84.62  Aligned_cols=75  Identities=21%  Similarity=0.278  Sum_probs=58.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      +.+|||+|||+|.+++.++.... .+|++||+++++++.|++|++..      +..|+.++.+|+.+.++.  ..+.+|.
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~------~~~~v~~~~~D~~~~l~~--~~~~fDl  124 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATL------KAGNARVVNTNALSFLAQ--PGTPHNV  124 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEEchHHHHHhh--cCCCceE
Confidence            57999999999999997554443 58999999999999999998876      567899999999876632  1223555


Q ss_pred             hHhh
Q psy13087        136 CFAN  139 (170)
Q Consensus       136 i~~~  139 (170)
                      |+.+
T Consensus       125 V~~D  128 (199)
T PRK10909        125 VFVD  128 (199)
T ss_pred             EEEC
Confidence            5553

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.96  E-value=1.9e-09  Score=84.93  Aligned_cols=76  Identities=14%  Similarity=0.237  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQ  132 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~  132 (170)
                      +++.+|||||||+|.++..+|.... ...|++||+++..++.|+++++.+      +..||.++.+|....++.   ...
T Consensus        71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~------~~~nv~~~~gdg~~g~~~---~ap  141 (209)
T PF01135_consen   71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL------GIDNVEVVVGDGSEGWPE---EAP  141 (209)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH------TTHSEEEEES-GGGTTGG---G-S
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh------ccCceeEEEcchhhcccc---CCC
Confidence            4579999999999999999999864 347999999999999999999987      678999999998765542   233


Q ss_pred             hhhhHh
Q psy13087        133 VRRCFA  138 (170)
Q Consensus       133 l~~i~~  138 (170)
                      +|.|+.
T Consensus       142 fD~I~v  147 (209)
T PF01135_consen  142 FDRIIV  147 (209)
T ss_dssp             EEEEEE
T ss_pred             cCEEEE
Confidence            455444

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=2e-09  Score=84.37  Aligned_cols=66  Identities=17%  Similarity=0.278  Sum_probs=59.4

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccC
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN  126 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~  126 (170)
                      ++++.+|||||||+|..+.-||+...  +|+.||+.++..+.|+++++.+      ++.||.++++|...-++.
T Consensus        70 ~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~l------g~~nV~v~~gDG~~G~~~  135 (209)
T COG2518          70 LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETL------GYENVTVRHGDGSKGWPE  135 (209)
T ss_pred             CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHc------CCCceEEEECCcccCCCC
Confidence            34579999999999999999999864  7999999999999999999997      788999999999877653

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.92  E-value=2.4e-09  Score=87.87  Aligned_cols=58  Identities=16%  Similarity=0.180  Sum_probs=48.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..+|..  +.+|+|+|+|+.+++.++++++..      ++ ++++...|+..
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~------~l-~v~~~~~D~~~  178 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE------NL-NIRTGLYDINS  178 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc------CC-ceEEEEechhc
Confidence            458999999999999999986  468999999999999999988764      44 67777776643

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.91  E-value=7.2e-11  Score=81.50  Aligned_cols=43  Identities=33%  Similarity=0.600  Sum_probs=37.6

Q ss_pred             EEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        60 LDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      ||||||+|.++..++..+|..+++|+|+|+.|++.|+++....
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~   43 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL   43 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc
Confidence            7999999999999999999999999999999999998888764

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02672 methionine S-methyltransferase

Probab=98.90  E-value=2.1e-09  Score=101.19  Aligned_cols=108  Identities=11%  Similarity=0.125  Sum_probs=76.5

Q ss_pred             CccchhhhcccCCCCcCCCCCCCCCCCCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHH
Q psy13087         11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK   90 (170)
Q Consensus        11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~   90 (170)
                      +.+.||+....++|..  .++.|.+....++....+...    -++.+|||||||+|.+++.+++.+|...|+|+|+|++
T Consensus        80 G~~~F~~l~~~V~p~V--LIPRpeTE~lve~L~~~~~~~----~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~  153 (1082)
T PLN02672         80 GFRNRKKLTMMEIPSI--FIPEDWSFTFYEGLNRHPDSI----FRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPR  153 (1082)
T ss_pred             CeEEecCCceeeCCCc--ccCchhHHHHHHHHHhccccc----CCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHH
Confidence            6778888888888864  245555544444411111110    0146899999999999999999998889999999999


Q ss_pred             HHHHHHHHHHHHhhc----------CCCCCCCeEEEEcchhhhc
Q psy13087         91 VSDYVIDRVAALRSQ----------NKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        91 ~i~~a~~~~~~~~~~----------~~~~~~nv~~i~~d~~~~l  124 (170)
                      +++.|++|++....+          .++..++|+++++|..+.+
T Consensus       154 Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        154 AVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             HHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            999999999763110          0012357999999987654

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.90  E-value=1.4e-08  Score=79.60  Aligned_cols=61  Identities=15%  Similarity=0.168  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++..  .+++++|+++++++.|+++++..      ++.|+.++.+|+...
T Consensus        78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~  138 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQL------GLHNVSVRHGDGWKG  138 (212)
T ss_pred             CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHC------CCCceEEEECCcccC
Confidence            46899999999999999888875  37999999999999999998875      667899999987653

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.90  E-value=2e-09  Score=85.00  Aligned_cols=66  Identities=14%  Similarity=0.092  Sum_probs=47.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhc------CCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQ------NKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~------~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||+|||.|..+..||.+  +.+|+|||+|+.+++.+.++.......      ......+|+++++|+.+.
T Consensus        35 ~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~  106 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL  106 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence            579999999999999999987  678999999999999864432100000      000124688999998754

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=2.7e-09  Score=87.70  Aligned_cols=62  Identities=23%  Similarity=0.341  Sum_probs=53.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||+|||+|-+++.+|+.+|...++.+|+|..+++.|++|++..      ..++..+...|..+-
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N------~~~~~~v~~s~~~~~  220 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN------GVENTEVWASNLYEP  220 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc------CCCccEEEEeccccc
Confidence            45999999999999999999999999999999999999999999874      556655566666543

>PRK00811 spermidine synthase; Provisional

Probab=98.89  E-value=3e-09  Score=87.35  Aligned_cols=69  Identities=14%  Similarity=0.172  Sum_probs=54.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+||+||||+|.++.++++..+..+|++||+++++++.|++......... -.-++++++.+|+..++.
T Consensus        77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-~~d~rv~v~~~Da~~~l~  145 (283)
T PRK00811         77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-YDDPRVELVIGDGIKFVA  145 (283)
T ss_pred             CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-ccCCceEEEECchHHHHh
Confidence            578999999999999999876455689999999999999999876531100 013679999999988764

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.89  E-value=7.1e-09  Score=80.56  Aligned_cols=56  Identities=18%  Similarity=0.152  Sum_probs=45.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcch
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA  120 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~  120 (170)
                      +.+|||+|||+|.++..+|+.  +..|+|+|+|+.|++.++++++..      ++ ++.+..+|+
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~------~~-~v~~~~~d~   86 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARE------NL-PLRTDAYDI   86 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHh------CC-CceeEeccc
Confidence            468999999999999999986  468999999999999999887653      33 255555554

Part of a tellurite-reducing operon tehA and tehB

>PRK08317 hypothetical protein; Provisional

Probab=98.89  E-value=1.4e-08  Score=79.49  Aligned_cols=60  Identities=23%  Similarity=0.344  Sum_probs=50.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||+|||+|.++..++..+ |..+++|+|+++.+++.|+++...       ...++.++.+|+..
T Consensus        20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-------~~~~~~~~~~d~~~   80 (241)
T PRK08317         20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-------LGPNVEFVRGDADG   80 (241)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-------CCCceEEEeccccc
Confidence            5799999999999999999987 677999999999999999887322       33578888887654

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.88  E-value=2.9e-09  Score=86.66  Aligned_cols=56  Identities=21%  Similarity=0.459  Sum_probs=46.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCC---CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPS---TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~---~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ..+|||||||+|.++..++...+.   ..++|+|+|+.|++.|+++.           +++.++.+|+..
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~  144 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHR  144 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeeccc
Confidence            468999999999999999988763   37999999999999987642           467888877764

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.88  E-value=3.1e-09  Score=89.53  Aligned_cols=60  Identities=22%  Similarity=0.255  Sum_probs=50.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ..+|||||||+|.++..+++.+|...|+++|+|+.+++.|+++++..      ++ ..+++.+|+..
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n------~l-~~~~~~~D~~~  256 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN------GL-EGEVFASNVFS  256 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CC-CCEEEEccccc
Confidence            35899999999999999999999889999999999999999998764      33 24566666543

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.88  E-value=6.6e-09  Score=84.77  Aligned_cols=57  Identities=21%  Similarity=0.346  Sum_probs=49.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++...+  +|+|+|+++.|++.++++..        . +++.++++|+.+.
T Consensus        43 ~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~--------~-~~v~~i~~D~~~~   99 (272)
T PRK00274         43 GDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA--------E-DNLTIIEGDALKV   99 (272)
T ss_pred             cCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc--------c-CceEEEEChhhcC
Confidence            57999999999999999999864  79999999999999987652        2 5899999998764

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.88  E-value=9.7e-09  Score=87.70  Aligned_cols=59  Identities=19%  Similarity=0.409  Sum_probs=48.3

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      .++.+|||||||+|.++..+++.+ +++|+|+|+|+++++.|+++++.         .++++..+|...
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~  224 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRD  224 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhh
Confidence            457899999999999999999876 56899999999999999988742         136666666654

>PRK06202 hypothetical protein; Provisional

Probab=98.87  E-value=3.5e-09  Score=84.09  Aligned_cols=45  Identities=16%  Similarity=0.316  Sum_probs=38.5

Q ss_pred             CCeEEEEcCccchHHHHHhhh----CCCCeEEEEECCHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPM----FPSTLILGLEIRVKVSDYVIDRVA  100 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~----~p~~~v~GvDis~~~i~~a~~~~~  100 (170)
                      +.+|||||||+|.++..+++.    .++.+|+|+|+|++|++.|+++..
T Consensus        61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~  109 (232)
T PRK06202         61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR  109 (232)
T ss_pred             CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc
Confidence            579999999999999988864    345689999999999999988753

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.87  E-value=4.5e-09  Score=85.37  Aligned_cols=60  Identities=18%  Similarity=0.324  Sum_probs=49.7

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      .++.+|||||||+|..+..++..+ +++|+|+|+|+.+++.|+++...        .+++.++.+|+..
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~~~  110 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDILK  110 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCccc
Confidence            346899999999999999998875 56899999999999999987532        2578888888764

>PRK14967 putative methyltransferase; Provisional

Probab=98.86  E-value=6.1e-09  Score=82.37  Aligned_cols=60  Identities=12%  Similarity=0.087  Sum_probs=50.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||+|||+|.++..+++.. ..+++|+|+++.+++.|+++++..      +. ++.++.+|+.+.
T Consensus        37 ~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~------~~-~~~~~~~d~~~~   96 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA------GV-DVDVRRGDWARA   96 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh------CC-eeEEEECchhhh
Confidence            5799999999999999999763 348999999999999999998764      33 578888887653

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.86  E-value=8.3e-09  Score=83.11  Aligned_cols=59  Identities=17%  Similarity=0.229  Sum_probs=46.4

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTN  119 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d  119 (170)
                      .++.+|||||||+|.+++.+++..+ ..|+|+|+|+.+++.|+++++..      +. .++.+..+|
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~------~~~~~~~~~~~~  177 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELN------GVELNVYLPQGD  177 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc------CCCceEEEccCC
Confidence            3578999999999999998877643 46999999999999999998764      33 345555444

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.86  E-value=6.3e-09  Score=90.28  Aligned_cols=77  Identities=14%  Similarity=0.215  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQ  132 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~  132 (170)
                      .++.+|||+|||+|..+..++... +...++|+|+++.+++.+++++++.      ++++|.++.+|+...... ++ +.
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~~~~~-~~-~~  320 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL------GLTNIETKALDARKVHEK-FA-EK  320 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCCcccccch-hc-cc
Confidence            346899999999999999999876 5679999999999999999999875      667899999998764321 11 34


Q ss_pred             hhhhHh
Q psy13087        133 VRRCFA  138 (170)
Q Consensus       133 l~~i~~  138 (170)
                      +|.|+.
T Consensus       321 fD~Vl~  326 (444)
T PRK14902        321 FDKILV  326 (444)
T ss_pred             CCEEEE
Confidence            555554

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.85  E-value=1.4e-08  Score=77.47  Aligned_cols=58  Identities=16%  Similarity=0.190  Sum_probs=49.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||+|||+|.++..++...+  +|+|+|+|+++++.|+++++..      .. +++++.+|+.+
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~------~~-~~~~~~~d~~~   77 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN------NV-GLDVVMTDLFK   77 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc------CC-ceEEEEccccc
Confidence            46899999999999999998865  7999999999999999998753      32 68888888764

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=1.3e-08  Score=83.97  Aligned_cols=49  Identities=20%  Similarity=0.352  Sum_probs=43.7

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      ..++.+|||+|||+|.+++.+++... ..++|+|+++.+++.|++|++..
T Consensus       160 ~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N  208 (300)
T COG2264         160 LKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLN  208 (300)
T ss_pred             hcCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHc
Confidence            45689999999999999999998853 57999999999999999998763

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.84  E-value=1.1e-08  Score=84.37  Aligned_cols=63  Identities=22%  Similarity=0.303  Sum_probs=54.2

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      .+..+|||||||+|.+++.+++.+|+.+++++|+ +.+++.+++++++.     +..++|+++.+|+.+
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----gl~~rv~~~~~d~~~  210 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK-----GVADRMRGIAVDIYK  210 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC-----CccceEEEEecCccC
Confidence            3457999999999999999999999999999997 79999999998775     233579999999764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.84  E-value=2e-08  Score=87.51  Aligned_cols=60  Identities=20%  Similarity=0.435  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..++..+ +++|+|+|+|++++..|+++....       ..++.++.+|+..
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~~  325 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCTK  325 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCccc
Confidence            36799999999999999999876 579999999999999998876432       2468888888764

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.84  E-value=2.8e-08  Score=83.03  Aligned_cols=61  Identities=16%  Similarity=0.170  Sum_probs=46.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++...+. .|+|||.|+.++..++......     +...+|.++.+|+..
T Consensus       123 g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~-----~~~~~i~~~~~d~e~  183 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLL-----GNDQRAHLLPLGIEQ  183 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhc-----CCCCCeEEEeCCHHH
Confidence            689999999999999999998654 6999999999987655443221     112478888777654

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.83  E-value=5.1e-09  Score=79.44  Aligned_cols=74  Identities=18%  Similarity=0.299  Sum_probs=56.1

Q ss_pred             eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhH
Q psy13087         58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCF  137 (170)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~  137 (170)
                      .|+|+.||.|..++.+|+.+.  +|++||+++..++.|+.|++-.     +..+||.++++|+.+.+.+.-.....|.||
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vY-----Gv~~~I~~i~gD~~~~~~~~~~~~~~D~vF   74 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVY-----GVADNIDFICGDFFELLKRLKSNKIFDVVF   74 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHT-----T-GGGEEEEES-HHHHGGGB------SEEE
T ss_pred             EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEeCCHHHHHhhccccccccEEE
Confidence            699999999999999999964  5999999999999999999887     446789999999999876543322357777


Q ss_pred             h
Q psy13087        138 A  138 (170)
Q Consensus       138 ~  138 (170)
                      .
T Consensus        75 l   75 (163)
T PF09445_consen   75 L   75 (163)
T ss_dssp             E
T ss_pred             E
Confidence            5

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.83  E-value=8.7e-09  Score=79.93  Aligned_cols=63  Identities=21%  Similarity=0.157  Sum_probs=54.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~  125 (170)
                      +.+|||++||+|.++++++.+.. ..|++||+++.+++.+++|++..      ++ ++++++++|+.+++.
T Consensus        50 g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~------~~~~~~~~~~~D~~~~l~  113 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALL------KSGEQAEVVRNSALRALK  113 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHh------CCcccEEEEehhHHHHHH
Confidence            57999999999999999998854 48999999999999999999876      34 479999999977653

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.83  E-value=9.1e-09  Score=80.93  Aligned_cols=62  Identities=19%  Similarity=0.368  Sum_probs=51.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++...+ ..+++|+|+++.+++.++++....     +...++.++.+|+..
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~  114 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-----GLSGNVEFVQGDAEA  114 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-----ccccCeEEEeccccc
Confidence            57999999999999999999886 579999999999999999987542     123468888888764

>TIGR03438 probable methyltransferase

Probab=98.82  E-value=1.5e-08  Score=83.88  Aligned_cols=62  Identities=15%  Similarity=0.097  Sum_probs=49.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||+|||+|..+..+++..+ ..+|+|||+|++|++.|++++...     ....+|.++++|..+
T Consensus        64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-----~p~~~v~~i~gD~~~  126 (301)
T TIGR03438        64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-----YPQLEVHGICADFTQ  126 (301)
T ss_pred             CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-----CCCceEEEEEEcccc
Confidence            57899999999999999998875 478999999999999999987653     111246667787654

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG3420|consensus

Probab=98.81  E-value=1.8e-09  Score=80.17  Aligned_cols=87  Identities=18%  Similarity=0.396  Sum_probs=64.0

Q ss_pred             cCCCCcCCCC-CCCCCCCCCCc-----cccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHH
Q psy13087         21 HSNPIADHSV-EYPPSPNDMDW-----SPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDY   94 (170)
Q Consensus        21 ~~~p~~~~~~-~~p~~~~~~~w-----~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~   94 (170)
                      ...|..  .+ |||++|+...-     ...+++..      +++++|||||.|.+.++.+.. ....|+|+||++++++.
T Consensus        16 FeKpk~--~LEQY~T~p~iAasM~~~Ih~TygdiE------gkkl~DLgcgcGmLs~a~sm~-~~e~vlGfDIdpeALEI   86 (185)
T KOG3420|consen   16 FEKPKL--LLEQYPTRPHIAASMLYTIHNTYGDIE------GKKLKDLGCGCGMLSIAFSMP-KNESVLGFDIDPEALEI   86 (185)
T ss_pred             ccccch--hhhhCCCcHHHHHHHHHHHHhhhcccc------CcchhhhcCchhhhHHHhhcC-CCceEEeeecCHHHHHH
Confidence            444543  24 89999875321     22355543      789999999999999776644 44589999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         95 VIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        95 a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +++|+++.      . -++.++++|..+.
T Consensus        87 f~rNaeEf------E-vqidlLqcdildl  108 (185)
T KOG3420|consen   87 FTRNAEEF------E-VQIDLLQCDILDL  108 (185)
T ss_pred             HhhchHHh------h-hhhheeeeeccch
Confidence            99999886      2 2468888887764

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.81  E-value=9.8e-09  Score=80.58  Aligned_cols=58  Identities=28%  Similarity=0.456  Sum_probs=49.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++...+...++|+|+++.++..++++..          +++.++.+|+...
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~~   92 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEKL   92 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhhC
Confidence            368999999999999999999988889999999999998877641          3677777777653

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.81  E-value=2.1e-08  Score=82.90  Aligned_cols=62  Identities=18%  Similarity=0.261  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++..|||||||+|.++..+++..  .+|+|+|+++.+++.+++++...     +..++++++++|+.+.
T Consensus        36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~-----~~~~~v~ii~~Dal~~   97 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNS-----PLASKLEVIEGDALKT   97 (294)
T ss_pred             CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhc-----CCCCcEEEEECCHhhh
Confidence            36799999999999999999874  46999999999999999988654     2247899999999763

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.80  E-value=1.3e-08  Score=87.99  Aligned_cols=77  Identities=14%  Similarity=0.239  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQV  133 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l  133 (170)
                      .++.+|||+|||+|..+..++...++..|+|+|++++++..++++++..      +. +++++.+|+... +.++..+.+
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~------g~-~~~~~~~D~~~~-~~~~~~~~f  314 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL------GL-KATVIVGDARDP-AQWWDGQPF  314 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc------CC-CeEEEEcCcccc-hhhcccCCC
Confidence            4578999999999999999999887679999999999999999999875      44 378888888753 222334455


Q ss_pred             hhhHh
Q psy13087        134 RRCFA  138 (170)
Q Consensus       134 ~~i~~  138 (170)
                      |.|+.
T Consensus       315 D~Vl~  319 (427)
T PRK10901        315 DRILL  319 (427)
T ss_pred             CEEEE
Confidence            65554

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.80  E-value=2.2e-08  Score=78.79  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=48.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAM  121 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~  121 (170)
                      +.+|||||||+|.++..++...  ..|+|+|+|+.+++.|+++....      +. +++.+..+|..
T Consensus        64 ~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~------~~~~~i~~~~~d~~  122 (230)
T PRK07580         64 GLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEA------GLAGNITFEVGDLE  122 (230)
T ss_pred             CCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc------CCccCcEEEEcCch
Confidence            5799999999999999999874  46999999999999999987654      22 57888888743

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.80  E-value=1.5e-08  Score=82.08  Aligned_cols=58  Identities=21%  Similarity=0.344  Sum_probs=50.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..+++..  .+++|+|+++.+++.++++...        .+|+.++.+|+.+.
T Consensus        30 ~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~   87 (258)
T PRK14896         30 GDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKV   87 (258)
T ss_pred             cCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccC
Confidence            6799999999999999999983  5799999999999999887632        36899999998763

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.80  E-value=1.8e-08  Score=85.76  Aligned_cols=74  Identities=18%  Similarity=0.275  Sum_probs=60.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      +.+|||+|||+|.+++.+|..  ...|+|||+++.+++.|++|++..      +.+|+.++.+|+.+++...  ...+|.
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~------~~~~~~~~~~d~~~~~~~~--~~~~D~  303 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQML------GLDNLSFAALDSAKFATAQ--MSAPEL  303 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHHHHhc--CCCCCE
Confidence            578999999999999999965  458999999999999999998775      5679999999998766431  123566


Q ss_pred             hHhh
Q psy13087        136 CFAN  139 (170)
Q Consensus       136 i~~~  139 (170)
                      ++.+
T Consensus       304 vi~D  307 (374)
T TIGR02085       304 VLVN  307 (374)
T ss_pred             EEEC
Confidence            6653

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG1270|consensus

Probab=98.80  E-value=5.4e-09  Score=84.26  Aligned_cols=42  Identities=21%  Similarity=0.382  Sum_probs=38.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~   99 (170)
                      +.+|||+|||.|-++..||+..  ..|+|||++++||+.|++..
T Consensus        90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~  131 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHK  131 (282)
T ss_pred             CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhh
Confidence            4679999999999999999984  67999999999999999983

>PRK14968 putative methyltransferase; Provisional

Probab=98.80  E-value=2.8e-08  Score=75.61  Aligned_cols=60  Identities=15%  Similarity=0.241  Sum_probs=50.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC--eEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN--IACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~i~~d~~~~  123 (170)
                      +.+|||+|||+|.++..++..  +.+++|+|+|+++++.+++++...      ...+  +.++.+|..+.
T Consensus        24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~------~~~~~~~~~~~~d~~~~   85 (188)
T PRK14968         24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLN------NIRNNGVEVIRSDLFEP   85 (188)
T ss_pred             CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHc------CCCCcceEEEecccccc
Confidence            578999999999999999988  578999999999999999988664      3334  78888876543

>PHA03411 putative methyltransferase; Provisional

Probab=98.79  E-value=1.1e-08  Score=83.58  Aligned_cols=58  Identities=12%  Similarity=0.173  Sum_probs=49.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ..+|||+|||+|.++..++...+..+|+|+|+++.|++.|+++.           +++.++++|+....
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----------~~v~~v~~D~~e~~  122 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----------PEAEWITSDVFEFE  122 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------cCCEEEECchhhhc
Confidence            46899999999999999988876679999999999999987752           46888888887643

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.79  E-value=1.9e-08  Score=85.01  Aligned_cols=61  Identities=23%  Similarity=0.375  Sum_probs=54.6

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      .+|||+|||+|.+++.+|+...  .|+|||+++++++.|++|++..      +++|++++.+|+.++++
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~------~~~~v~~~~~d~~~~~~  259 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAAN------NIDNVQIIRMSAEEFTQ  259 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHc------CCCcEEEEEcCHHHHHH
Confidence            4799999999999999998863  7999999999999999998775      67799999999988764

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.78  E-value=2.1e-08  Score=82.87  Aligned_cols=49  Identities=16%  Similarity=0.291  Sum_probs=42.4

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      ..++.+|||+|||+|.+++.+++.. ..+|+|+|+++.+++.|++|++..
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N  207 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELN  207 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHT
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHc
Confidence            4557899999999999999999874 358999999999999999998764

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.78  E-value=2.9e-08  Score=82.80  Aligned_cols=63  Identities=16%  Similarity=0.164  Sum_probs=48.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM  121 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~  121 (170)
                      +.+|||||||+|.++..+++.  +.+|+|+|+|+.|++.|+++....... .....++.+..+|+.
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~f~~~Dl~  207 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAA-LPPEVLPKFEANDLE  207 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccc-cccccceEEEEcchh
Confidence            579999999999999999986  468999999999999999987653100 001245777777754

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.78  E-value=2.3e-08  Score=86.65  Aligned_cols=77  Identities=16%  Similarity=0.243  Sum_probs=62.7

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQ  132 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~  132 (170)
                      .++.+|||+|||+|..+..+|... +...|+++|+++.+++.+++++++.      ++++++++.+|+.... . +..+.
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~------g~~~v~~~~~Da~~l~-~-~~~~~  307 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL------KLSSIEIKIADAERLT-E-YVQDT  307 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhhhh-h-hhhcc
Confidence            457899999999999999999875 4568999999999999999999886      6678999999987532 1 22445


Q ss_pred             hhhhHh
Q psy13087        133 VRRCFA  138 (170)
Q Consensus       133 l~~i~~  138 (170)
                      +|.|+.
T Consensus       308 fD~Vl~  313 (431)
T PRK14903        308 FDRILV  313 (431)
T ss_pred             CCEEEE
Confidence            777765

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.78  E-value=1.2e-08  Score=79.02  Aligned_cols=41  Identities=27%  Similarity=0.331  Sum_probs=35.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +.+|||||||+|.++..++... ...++|+|+++++++.|++
T Consensus        14 ~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~   54 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA   54 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH
Confidence            5789999999999999998764 4678999999999988753

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN03075 nicotianamine synthase; Provisional

Probab=98.77  E-value=2.1e-08  Score=82.69  Aligned_cols=63  Identities=16%  Similarity=0.138  Sum_probs=50.3

Q ss_pred             CCeEEEEcCccch--HHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH-HhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGG--LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA-LRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~--~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~-~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|+|||||.|.  .++.++..+|+..++|+|+++++++.|++.++. .     +..++|+|..+|+.+.
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~-----gL~~rV~F~~~Da~~~  189 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDP-----DLSKRMFFHTADVMDV  189 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhcc-----CccCCcEEEECchhhc
Confidence            5899999999884  344455678999999999999999999998854 2     2235699999998864

>KOG1540|consensus

Probab=98.77  E-value=2.7e-08  Score=80.02  Aligned_cols=96  Identities=13%  Similarity=0.099  Sum_probs=71.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCC------CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC--CeEEEEcchhhhc--
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPS------TLILGLEIRVKVSDYVIDRVAALRSQNKGQYE--NIACIRTNAMKYL--  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~------~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~i~~d~~~~l--  124 (170)
                      ++.++||++||||.+++.+.+..+.      .+|+++||+++|+..++++..+.     ...+  .+.++.+|+++.-  
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-----~l~~~~~~~w~~~dAE~LpFd  174 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-----PLKASSRVEWVEGDAEDLPFD  174 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-----CCCcCCceEEEeCCcccCCCC
Confidence            4689999999999999999998776      79999999999999999998664     2223  3899999998631  


Q ss_pred             c-------------CCC-chhhhhhhHhhhcCCccccchhhhcccc
Q psy13087        125 P-------------NYF-RKAQVRRCFANCILNSQYENIACIRTNA  156 (170)
Q Consensus       125 ~-------------~~f-~~~~l~~i~~~~~~~g~~~~~~~~~~~~  156 (170)
                      .             |+- ....+...|- .++||+.+-.....+..
T Consensus       175 d~s~D~yTiafGIRN~th~~k~l~EAYR-VLKpGGrf~cLeFskv~  219 (296)
T KOG1540|consen  175 DDSFDAYTIAFGIRNVTHIQKALREAYR-VLKPGGRFSCLEFSKVE  219 (296)
T ss_pred             CCcceeEEEecceecCCCHHHHHHHHHH-hcCCCcEEEEEEccccc
Confidence            1             111 3445667776 78888865544444433

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.77  E-value=3.7e-08  Score=80.98  Aligned_cols=48  Identities=21%  Similarity=0.348  Sum_probs=41.7

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      .++.+|||+|||+|.+++.+++. +..+|+|+|+++.+++.|++++...
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n  205 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELN  205 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHc
Confidence            34689999999999999998875 3458999999999999999998764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.77  E-value=2.4e-08  Score=79.17  Aligned_cols=66  Identities=12%  Similarity=0.073  Sum_probs=48.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhc------CCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQ------NKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~------~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||+|||.|..+..||..  +.+|+|||+|+.+++.+.+........      ......+|++.++|+.+.
T Consensus        38 ~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l  109 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL  109 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCC
Confidence            579999999999999999986  678999999999999875321100000      000124688999998865

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.75  E-value=3e-08  Score=84.11  Aligned_cols=62  Identities=23%  Similarity=0.351  Sum_probs=55.0

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccC
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN  126 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~  126 (170)
                      .+|||++||+|.+++.+|+..  ..|+|||+++.+++.|++|++..      +++|++++.+|+.++++.
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~------~~~~v~~~~~d~~~~l~~  269 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAAN------GIDNVQIIRMSAEEFTQA  269 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEECCHHHHHHH
Confidence            479999999999999999875  37999999999999999998775      667999999999887654

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.75  E-value=1.4e-08  Score=87.01  Aligned_cols=64  Identities=13%  Similarity=0.156  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC--CCeEEEEcchhhhcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY--ENIACIRTNAMKYLP  125 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~i~~d~~~~l~  125 (170)
                      ++.+|||+|||+|.+++.++.. +...|++||+|+.+++.|++|++..      ++  ++++++++|+.+++.
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~N------gl~~~~v~~i~~D~~~~l~  285 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELN------KLDLSKAEFVRDDVFKLLR  285 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc------CCCCCcEEEEEccHHHHHH
Confidence            4689999999999999887754 3458999999999999999999874      54  379999999988763

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.74  E-value=1.2e-08  Score=81.76  Aligned_cols=42  Identities=14%  Similarity=0.217  Sum_probs=37.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~   99 (170)
                      ..+|||||||+|.++..++..  +..|+|+|+|+.|++.|+++.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~   84 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKD   84 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC
Confidence            478999999999999998875  468999999999999998764

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.73  E-value=3.3e-08  Score=85.92  Aligned_cols=65  Identities=14%  Similarity=0.168  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      .++.+|||+|||+|..+..++...+ ...|+|+|+++.+++.++++++..      +++||.++.+|+....
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~------g~~~v~~~~~Da~~~~  314 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL------GITIIETIEGDARSFS  314 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh------CCCeEEEEeCcccccc
Confidence            3468999999999999999988653 458999999999999999999886      6678999999987643

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.73  E-value=3e-08  Score=85.92  Aligned_cols=79  Identities=10%  Similarity=0.115  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC-Cchh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY-FRKA  131 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~-f~~~  131 (170)
                      .++.+|||+|||+|..+..++...+ ...|+++|+++.+++.++++++..      +++||+++.+|+....... +..+
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~------g~~~v~~~~~D~~~~~~~~~~~~~  324 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL------GLKSIKILAADSRNLLELKPQWRG  324 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc------CCCeEEEEeCChhhcccccccccc
Confidence            3578999999999999999998753 458999999999999999999886      6778999999987643211 1234


Q ss_pred             hhhhhHh
Q psy13087        132 QVRRCFA  138 (170)
Q Consensus       132 ~l~~i~~  138 (170)
                      .+|.|+.
T Consensus       325 ~fD~Vl~  331 (434)
T PRK14901        325 YFDRILL  331 (434)
T ss_pred             cCCEEEE
Confidence            5666665

>PRK05785 hypothetical protein; Provisional

Probab=98.73  E-value=2e-08  Score=79.84  Aligned_cols=42  Identities=17%  Similarity=0.284  Sum_probs=38.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +.+|||||||+|.++..+++.+ +.+|+|+|+|++|++.|+++
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~   93 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA   93 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc
Confidence            4799999999999999999886 46899999999999998865

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.72  E-value=4e-08  Score=82.65  Aligned_cols=58  Identities=16%  Similarity=0.130  Sum_probs=49.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..+++..+..+++|+|+|++|++.|+++..         ..++.++.+|+.+
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---------~~~i~~i~gD~e~  171 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------LKECKIIEGDAED  171 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---------ccCCeEEeccHHh
Confidence            579999999999999999988877899999999999999988753         2467778777764

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.72  E-value=3.8e-08  Score=79.37  Aligned_cols=58  Identities=21%  Similarity=0.340  Sum_probs=49.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++...+  .++|+|+++.++..++++..        ..+++.++++|+...
T Consensus        30 ~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~--------~~~~v~v~~~D~~~~   87 (253)
T TIGR00755        30 GDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLS--------LYERLEVIEGDALKV   87 (253)
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhC--------cCCcEEEEECchhcC
Confidence            57999999999999999999875  49999999999999987653        236899999998753

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK01581 speE spermidine synthase; Validated

Probab=98.72  E-value=1.4e-08  Score=85.91  Aligned_cols=69  Identities=10%  Similarity=0.042  Sum_probs=52.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH--HHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR--VAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~--~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+||+||||+|..+..+.+..+..++++||+++++++.|++.  +...... .-..++++++.+|+.+++.
T Consensus       151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~-~~~DpRV~vvi~Da~~fL~  221 (374)
T PRK01581        151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKS-AFFDNRVNVHVCDAKEFLS  221 (374)
T ss_pred             CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccc-cCCCCceEEEECcHHHHHH
Confidence            5799999999999998888765556899999999999999962  1111000 0023689999999998764

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.71  E-value=1.2e-08  Score=79.43  Aligned_cols=60  Identities=22%  Similarity=0.418  Sum_probs=46.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      -.++||+|||.|.++..||.++.  .++++|+|+.+++.|++++..        .+||.++++|+.+..+
T Consensus        44 y~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~~P  103 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAG--------LPHVEWIQADVPEFWP  103 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---
T ss_pred             cceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCCCC
Confidence            36899999999999999999963  699999999999999999753        4799999999877644

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.71  E-value=4.6e-08  Score=81.80  Aligned_cols=60  Identities=23%  Similarity=0.316  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++..|||+|||+|.+++.++..  +..++|+|+++.|+..|++|++..      +.+++.++.+|+..
T Consensus       182 ~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~------g~~~i~~~~~D~~~  241 (329)
T TIGR01177       182 EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHY------GIEDFFVKRGDATK  241 (329)
T ss_pred             CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHh------CCCCCeEEecchhc
Confidence            3679999999999999998765  568999999999999999998876      55678888898875

This family is found exclusively in the Archaea.

>TIGR00452 methyltransferase, putative

Probab=98.70  E-value=1.5e-07  Score=78.53  Aligned_cols=62  Identities=16%  Similarity=0.108  Sum_probs=44.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..++...+ ..|+|||.|+.|+..++...+..     ....++.++.+++.+
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~-----~~~~~v~~~~~~ie~  182 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLL-----DNDKRAILEPLGIEQ  182 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHh-----ccCCCeEEEECCHHH
Confidence            368999999999999999998765 37999999999987754332221     112456666665543

Known examples to date are restricted to the proteobacteria.

>KOG2904|consensus

Probab=98.70  E-value=6.2e-08  Score=78.72  Aligned_cols=56  Identities=16%  Similarity=0.334  Sum_probs=49.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACI  116 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i  116 (170)
                      +.++||+|||+|.+++.++...|.+.|++||.|+.++..|.+|++.+.     ..+.+.++
T Consensus       149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~-----l~g~i~v~  204 (328)
T KOG2904|consen  149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK-----LSGRIEVI  204 (328)
T ss_pred             cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh-----hcCceEEE
Confidence            568999999999999999999999999999999999999999998872     23445555

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.69  E-value=8.5e-08  Score=77.93  Aligned_cols=64  Identities=14%  Similarity=0.216  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +++.+|||+|||+|..+..+|...+ ...|+++|+++.+++.++++++..      ++.||.++..|+...
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~~  134 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC------GVLNVAVTNFDGRVF  134 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc------CCCcEEEecCCHHHh
Confidence            3468999999999999999998764 358999999999999999999886      667899999997653

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.69  E-value=5e-08  Score=81.49  Aligned_cols=58  Identities=14%  Similarity=0.075  Sum_probs=47.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEE
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIR  117 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~  117 (170)
                      ++.++||||||+|.+...++...++.+++|+||++.+++.|+++++..     ..+ ++|.+..
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N-----p~l~~~I~~~~  172 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN-----PGLNGAIRLRL  172 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-----cCCcCcEEEEE
Confidence            357999999999998888888878889999999999999999999763     023 3577653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.68  E-value=3.4e-08  Score=90.27  Aligned_cols=64  Identities=11%  Similarity=0.093  Sum_probs=54.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC--CeEEEEcchhhhcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE--NIACIRTNAMKYLP  125 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~i~~d~~~~l~  125 (170)
                      ++.+|||+|||+|.+++.+|.. +...|++||+|+.+++.|++|++..      +++  +++++++|+.+++.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~n------g~~~~~v~~i~~D~~~~l~  603 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALN------GLSGRQHRLIQADCLAWLK  603 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh------CCCccceEEEEccHHHHHH
Confidence            4689999999999999999986 3347999999999999999999775      443  79999999987653

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.68  E-value=5.1e-08  Score=65.21  Aligned_cols=60  Identities=23%  Similarity=0.414  Sum_probs=48.5

Q ss_pred             eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +++|+|||.|.++..++. .+..+++++|+++.++..+++....      ....++.++..|+.+..
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~   60 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAA------LLADNVEVLKGDAEELP   60 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhc------ccccceEEEEcChhhhc
Confidence            489999999999999998 5567999999999999998854332      23467888888887654

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PLN02366 spermidine synthase

Probab=98.67  E-value=4.2e-08  Score=81.59  Aligned_cols=69  Identities=19%  Similarity=0.125  Sum_probs=53.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ...+||+||||.|.++.++++..+..+|+.||+++++++.|++........  -.-++++++.+|+..++.
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--~~dpRv~vi~~Da~~~l~  159 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG--FDDPRVNLHIGDGVEFLK  159 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc--cCCCceEEEEChHHHHHh
Confidence            357999999999999999987633358999999999999999987543100  022579999999877653

>PTZ00146 fibrillarin; Provisional

Probab=98.66  E-value=5.5e-08  Score=80.11  Aligned_cols=61  Identities=13%  Similarity=0.166  Sum_probs=48.0

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM  121 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~  121 (170)
                      +.++.+|||||||+|.++..+|.... ...|++||+++.+.+...+.+..        .+||.++.+|+.
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--------r~NI~~I~~Da~  191 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--------RPNIVPIIEDAR  191 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCCEEEECCcc
Confidence            45678999999999999999999863 45899999999876555544432        157888888875

>PHA03412 putative methyltransferase; Provisional

Probab=98.65  E-value=3.8e-08  Score=78.77  Aligned_cols=56  Identities=21%  Similarity=0.272  Sum_probs=46.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhC---CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF---PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~---p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||+|||+|.+++.+++..   +..+|+|||+++.+++.|+++.           .++.++++|+..
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----------~~~~~~~~D~~~  108 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----------PEATWINADALT  108 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----------cCCEEEEcchhc
Confidence            4799999999999999999864   3568999999999999999764           357777788764

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.65  E-value=4.6e-08  Score=76.12  Aligned_cols=60  Identities=22%  Similarity=0.371  Sum_probs=50.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||+|||+|.++..+++..+. .+++|+|+++.++..++++..        ...++.++.+|+.+.
T Consensus        40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------~~~~i~~~~~d~~~~  100 (223)
T TIGR01934        40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------LPLNIEFIQADAEAL  100 (223)
T ss_pred             CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--------cCCCceEEecchhcC
Confidence            579999999999999999999875 689999999999999988763        124678887777653

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.60  E-value=7.4e-08  Score=84.02  Aligned_cols=56  Identities=16%  Similarity=0.262  Sum_probs=45.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM  121 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~  121 (170)
                      +.+|||||||+|.++..+++..  .+|+|+|++++|++.+++..        +..+|+.++.+|+.
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~--------~~~~~i~~~~~d~~   93 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESIN--------GHYKNVKFMCADVT   93 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHh--------ccCCceEEEEeccc
Confidence            5789999999999999999884  47999999999998775432        13467888888875

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.59  E-value=1.3e-07  Score=76.86  Aligned_cols=44  Identities=25%  Similarity=0.453  Sum_probs=36.1

Q ss_pred             CCeEEEEcCccch----HHHHHhhhCC-----CCeEEEEECCHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGG----LLVTLSPMFP-----STLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        56 ~~~vLDiGCG~G~----~~~~la~~~p-----~~~v~GvDis~~~i~~a~~~~   99 (170)
                      +.+|+|+|||+|.    +++.+++..+     +..|+|+|+|+.|++.|++.+
T Consensus       100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~  152 (264)
T smart00138      100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence            4699999999997    5556666544     468999999999999999864

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.59  E-value=1.2e-07  Score=74.22  Aligned_cols=80  Identities=14%  Similarity=0.237  Sum_probs=56.6

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQV  133 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l  133 (170)
                      .++..|+|+-||-|.|++.+|+..+...|+++|++|.+++..+++++..     +...+|.++++|+.++++    ...+
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN-----kv~~~i~~~~~D~~~~~~----~~~~  170 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN-----KVENRIEVINGDAREFLP----EGKF  170 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT-----T-TTTEEEEES-GGG-------TT-E
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc-----CCCCeEEEEcCCHHHhcC----cccc
Confidence            4578999999999999999999766778999999999999999999874     223458899999998765    5566


Q ss_pred             hhhHhhhcC
Q psy13087        134 RRCFANCIL  142 (170)
Q Consensus       134 ~~i~~~~~~  142 (170)
                      |++..+.|.
T Consensus       171 drvim~lp~  179 (200)
T PF02475_consen  171 DRVIMNLPE  179 (200)
T ss_dssp             EEEEE--TS
T ss_pred             CEEEECChH
Confidence            677665444

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR00417 speE spermidine synthase

Probab=98.58  E-value=1.1e-07  Score=77.52  Aligned_cols=67  Identities=16%  Similarity=0.168  Sum_probs=51.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+||+||||+|.++..+++..+..+++++|+++++++.|++........  -..++++++.+|+..++
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~--~~~~~v~i~~~D~~~~l  139 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS--YDDPRVDLQIDDGFKFL  139 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc--ccCCceEEEECchHHHH
Confidence            46999999999999999887755568999999999999999887543100  01256888888887654

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.58  E-value=2.3e-07  Score=67.79  Aligned_cols=58  Identities=12%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087         58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM  121 (170)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~  121 (170)
                      .++|||||.|.++..++..++..+++++|.++.+++.++++++..      +.+|+.++...+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n------~~~~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN------NLPNVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc------CCCcEEEEEeeee
Confidence            489999999999999999988889999999999999999998764      5567887776544

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=1.5e-07  Score=75.67  Aligned_cols=82  Identities=13%  Similarity=0.156  Sum_probs=65.6

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC-eEEEEcchhhhccCCCch
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN-IACIRTNAMKYLPNYFRK  130 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~i~~d~~~~l~~~f~~  130 (170)
                      +.++.+|+|.|.|+|.++.+||.. .|..+|+.+|+.++.++.|++|+++.      ++.| |.+..+|+.+...    .
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~------~l~d~v~~~~~Dv~~~~~----~  161 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF------GLGDRVTLKLGDVREGID----E  161 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh------ccccceEEEecccccccc----c
Confidence            567899999999999999999974 56679999999999999999999987      4444 9998898887542    2


Q ss_pred             hhhhhhHhhhcCCc
Q psy13087        131 AQVRRCFANCILNS  144 (170)
Q Consensus       131 ~~l~~i~~~~~~~g  144 (170)
                      +.+|.+|+-.|.|+
T Consensus       162 ~~vDav~LDmp~PW  175 (256)
T COG2519         162 EDVDAVFLDLPDPW  175 (256)
T ss_pred             cccCEEEEcCCChH
Confidence            25666665555554

>PRK03612 spermidine synthase; Provisional

Probab=98.57  E-value=5.5e-08  Score=86.11  Aligned_cols=68  Identities=13%  Similarity=0.210  Sum_probs=51.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHH--HHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDR--VAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~--~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +.+|||||||+|..+.++++. +. .++++||+++++++.|+++  ........ -..++++++.+|+.+++.
T Consensus       298 ~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~-~~dprv~vi~~Da~~~l~  368 (521)
T PRK03612        298 PRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGA-LDDPRVTVVNDDAFNWLR  368 (521)
T ss_pred             CCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccc-cCCCceEEEEChHHHHHH
Confidence            578999999999999999875 54 6999999999999999984  22221000 012579999999988764

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.56  E-value=2.4e-07  Score=72.70  Aligned_cols=61  Identities=18%  Similarity=0.170  Sum_probs=49.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..++...  ..++|+|+++.+++.+++++...      ...++.+...|+.+..
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~  106 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKD------PLLKIEYRCTSVEDLA  106 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHc------CCCceEEEeCCHHHhh
Confidence            5799999999999999998864  46999999999999999887653      3336888888776543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.55  E-value=2.1e-07  Score=80.49  Aligned_cols=62  Identities=13%  Similarity=0.209  Sum_probs=50.8

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAM  121 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~  121 (170)
                      .++.+|||+|||+|..+..++...+...++|+|+++++++.+++++++.      +.+ ++.++.+|..
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~------g~~~~v~~~~~d~~  299 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL------GLTIKAETKDGDGR  299 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeccccc
Confidence            4578999999999999999999877679999999999999999999875      443 2333555554

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG1541|consensus

Probab=98.54  E-value=6.1e-08  Score=76.62  Aligned_cols=41  Identities=24%  Similarity=0.408  Sum_probs=36.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      ...|||||||+|..+..+...  +..++|||||+.|++.|.++
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~   91 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVER   91 (270)
T ss_pred             CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHh
Confidence            578999999999999998876  46799999999999999973

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.54  E-value=3.6e-07  Score=73.73  Aligned_cols=87  Identities=13%  Similarity=0.150  Sum_probs=64.0

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh-ccCCCch
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY-LPNYFRK  130 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~-l~~~f~~  130 (170)
                      +.++.+|||-|+|+|.++..+|+. .|..+|+..|++++.++.|+++++..     +..+||.+.+.|+.+. ...- .+
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-----gl~~~v~~~~~Dv~~~g~~~~-~~  111 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-----GLDDNVTVHHRDVCEEGFDEE-LE  111 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-----TCCTTEEEEES-GGCG--STT--T
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-----CCCCCceeEecceeccccccc-cc
Confidence            356899999999999999999975 57789999999999999999999986     3335899999998632 2111 13


Q ss_pred             hhhhhhHhhhcCCcc
Q psy13087        131 AQVRRCFANCILNSQ  145 (170)
Q Consensus       131 ~~l~~i~~~~~~~g~  145 (170)
                      ..+|.+|+-.|.|+.
T Consensus       112 ~~~DavfLDlp~Pw~  126 (247)
T PF08704_consen  112 SDFDAVFLDLPDPWE  126 (247)
T ss_dssp             TSEEEEEEESSSGGG
T ss_pred             CcccEEEEeCCCHHH
Confidence            567888887777764

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=2.1e-07  Score=80.58  Aligned_cols=76  Identities=18%  Similarity=0.306  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVR  134 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~  134 (170)
                      +++++||+=||.|.|++.+|+..  .+|+|||+++++++.|++|++..      +.+|++|+.+++.++...+-.....+
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n------~i~N~~f~~~~ae~~~~~~~~~~~~d  364 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAAN------GIDNVEFIAGDAEEFTPAWWEGYKPD  364 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHc------CCCcEEEEeCCHHHHhhhccccCCCC
Confidence            46799999999999999999774  57999999999999999999885      78899999999999876654334455


Q ss_pred             hhHh
Q psy13087        135 RCFA  138 (170)
Q Consensus       135 ~i~~  138 (170)
                      .|++
T Consensus       365 ~Vvv  368 (432)
T COG2265         365 VVVV  368 (432)
T ss_pred             EEEE
Confidence            5555

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.49  E-value=2.9e-07  Score=78.66  Aligned_cols=63  Identities=11%  Similarity=-0.006  Sum_probs=55.4

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      .+|||++||+|.+++.+|...+...|+++|+++.+++.+++|++..      +++++.+.++|+...+.
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N------~~~~~~v~~~Da~~~l~  121 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN------GLENEKVFNKDANALLH  121 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCceEEEhhhHHHHHh
Confidence            5899999999999999998876558999999999999999999775      66788899999987654

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=3.9e-07  Score=73.85  Aligned_cols=59  Identities=24%  Similarity=0.461  Sum_probs=51.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++..|||||+|.|.++..|++..  ..|++||+++.++...++...        ..+|+.++++|+..+
T Consensus        30 ~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~--------~~~n~~vi~~DaLk~   88 (259)
T COG0030          30 PGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFA--------PYDNLTVINGDALKF   88 (259)
T ss_pred             CCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcc--------cccceEEEeCchhcC
Confidence            36899999999999999999995  459999999999999988864        247999999999875

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.47  E-value=2.6e-07  Score=78.11  Aligned_cols=60  Identities=20%  Similarity=0.351  Sum_probs=48.2

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ..|||+-||.|.+++.+|...  ..|+|||+++++++.|++|++..      +++|++|+.+++.++.
T Consensus       198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N------~i~n~~f~~~~~~~~~  257 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLN------GIDNVEFIRGDAEDFA  257 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHT------T--SEEEEE--SHHCC
T ss_pred             CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHc------CCCcceEEEeeccchh
Confidence            379999999999999999985  46999999999999999999874      7899999998887654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.47  E-value=4.9e-07  Score=74.76  Aligned_cols=61  Identities=13%  Similarity=0.151  Sum_probs=53.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +..+||.+||.|.++..+++..+ +..|+|+|+++++++.|++++..        .++++++++|..++.
T Consensus        20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i~~~f~~l~   81 (296)
T PRK00050         20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLVHGNFSNLK   81 (296)
T ss_pred             CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEEeCCHHHHH
Confidence            57999999999999999999985 67999999999999999987632        358999999988753

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.47  E-value=3.6e-07  Score=71.91  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRV   89 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~   89 (170)
                      ++.+|||||||+|.++..+++.. +...|+|||+++
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~   86 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP   86 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence            36799999999999999999886 346899999997

>KOG2187|consensus

Probab=98.46  E-value=1.4e-07  Score=82.13  Aligned_cols=67  Identities=19%  Similarity=0.277  Sum_probs=58.0

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY  127 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~  127 (170)
                      +..+..+||+.||||.+++.+|+..  ..|+|||+++++++.|++|++..      +..|.+|+.+-+++.++..
T Consensus       381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~N------gisNa~Fi~gqaE~~~~sl  447 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQIN------GISNATFIVGQAEDLFPSL  447 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhc------Cccceeeeecchhhccchh
Confidence            3456899999999999999999885  46999999999999999998874      8899999999787766544

>PRK04148 hypothetical protein; Provisional

Probab=98.44  E-value=7.2e-07  Score=65.60  Aligned_cols=52  Identities=12%  Similarity=0.182  Sum_probs=41.9

Q ss_pred             CCeEEEEcCccch-HHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGG-LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~-~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|. ++..|++.  +..|+|+|+++.+++.|+++             .+.++.+|..+
T Consensus        17 ~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------------~~~~v~dDlf~   69 (134)
T PRK04148         17 NKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------------GLNAFVDDLFN   69 (134)
T ss_pred             CCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------------CCeEEECcCCC
Confidence            4789999999996 88888876  56899999999998887654             25666677664

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.41  E-value=7e-07  Score=65.82  Aligned_cols=88  Identities=17%  Similarity=0.221  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhh---cCCCCCCCeEEEE-cchhhhccCCCch
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRS---QNKGQYENIACIR-TNAMKYLPNYFRK  130 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~---~~~~~~~nv~~i~-~d~~~~l~~~f~~  130 (170)
                      ++.+|||||||+|.++..++...  .+++|+|+++.+++.  .+......   .....-....++. .++..++++  +.
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d--~~   95 (161)
T PF13489_consen   22 PGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD--PE   95 (161)
T ss_dssp             TTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH--HH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc--HH
Confidence            36899999999999999997763  489999999999887  10000000   0000012333332 244455553  45


Q ss_pred             hhhhhhHhhhcCCccccch
Q psy13087        131 AQVRRCFANCILNSQYENI  149 (170)
Q Consensus       131 ~~l~~i~~~~~~~g~~~~~  149 (170)
                      ..+..++. +++|||+.-+
T Consensus        96 ~~l~~l~~-~LkpgG~l~~  113 (161)
T PF13489_consen   96 EFLKELSR-LLKPGGYLVI  113 (161)
T ss_dssp             HHHHHHHH-CEEEEEEEEE
T ss_pred             HHHHHHHH-hcCCCCEEEE
Confidence            55666666 6788876443

...

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.39  E-value=5.9e-07  Score=69.09  Aligned_cols=76  Identities=22%  Similarity=0.247  Sum_probs=56.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCe---------EEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccC
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTL---------ILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN  126 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~---------v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~  126 (170)
                      +..|||--||+|.++++.|...++..         ++|.|+++++++.|++|++..     +....|.+.+.|+...-  
T Consensus        29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a-----g~~~~i~~~~~D~~~l~--  101 (179)
T PF01170_consen   29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA-----GVEDYIDFIQWDARELP--  101 (179)
T ss_dssp             TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-----T-CGGEEEEE--GGGGG--
T ss_pred             CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-----ccCCceEEEecchhhcc--
Confidence            57999999999999999999877766         899999999999999999876     23345889998988643  


Q ss_pred             CCchhhhhhhHhh
Q psy13087        127 YFRKAQVRRCFAN  139 (170)
Q Consensus       127 ~f~~~~l~~i~~~  139 (170)
                       +..++++.|..+
T Consensus       102 -~~~~~~d~Ivtn  113 (179)
T PF01170_consen  102 -LPDGSVDAIVTN  113 (179)
T ss_dssp             -GTTSBSCEEEEE
T ss_pred             -cccCCCCEEEEC
Confidence             333445555543

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.38  E-value=5.4e-07  Score=69.35  Aligned_cols=37  Identities=11%  Similarity=0.173  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKV   91 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~   91 (170)
                      ++.+|||||||+|.++..++... +..+++|+|+++.+
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~   69 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK   69 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence            46899999999999999999876 45689999999864

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.36  E-value=1.3e-06  Score=64.41  Aligned_cols=62  Identities=23%  Similarity=0.349  Sum_probs=48.8

Q ss_pred             CCeEEEEcCccchHHHHHhh-----hCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSP-----MFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM  121 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~-----~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~  121 (170)
                      ...|+|+|||.|.++..++.     . ++..|+|||.++..++.|.++.+.....   .-.++.+..++..
T Consensus        26 ~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~   92 (141)
T PF13679_consen   26 CITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSD---LEKRLSFIQGDIA   92 (141)
T ss_pred             CCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcch---hhccchhhccchh
Confidence            57999999999999999998     4 6789999999999999999998776210   1145666655544

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.36  E-value=1.8e-06  Score=68.23  Aligned_cols=59  Identities=19%  Similarity=0.241  Sum_probs=47.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..+++.  ..+++|+|+++.++..|+++....      .. ++.++.+|+...
T Consensus        49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~------~~-~~~~~~~~~~~~  107 (233)
T PRK05134         49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALES------GL-KIDYRQTTAEEL  107 (233)
T ss_pred             CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHc------CC-ceEEEecCHHHh
Confidence            578999999999999999886  467999999999999999887653      22 567777666554

>KOG2899|consensus

Probab=98.30  E-value=9.5e-07  Score=70.77  Aligned_cols=46  Identities=22%  Similarity=0.375  Sum_probs=43.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      +..+|||||-+|.+++.+|+.+....++|+||++..|..|+++++.
T Consensus        59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            5789999999999999999999888999999999999999999764

>KOG3191|consensus

Probab=98.28  E-value=1.9e-06  Score=66.32  Aligned_cols=72  Identities=21%  Similarity=0.347  Sum_probs=55.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVR  134 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~  134 (170)
                      ...++|||||+|..+..+++.. |++.+.+.||++.+.+...+-++..      . -++..+++|....+.+    +++|
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n------~-~~~~~V~tdl~~~l~~----~~VD  112 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN------R-VHIDVVRTDLLSGLRN----ESVD  112 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc------C-CccceeehhHHhhhcc----CCcc
Confidence            4689999999999999998864 6789999999999999888777653      2 3577888888776643    4444


Q ss_pred             hhHh
Q psy13087        135 RCFA  138 (170)
Q Consensus       135 ~i~~  138 (170)
                      .+.+
T Consensus       113 vLvf  116 (209)
T KOG3191|consen  113 VLVF  116 (209)
T ss_pred             EEEE
Confidence            4444

>KOG1499|consensus

Probab=98.27  E-value=2.2e-06  Score=71.72  Aligned_cols=61  Identities=23%  Similarity=0.298  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC-eEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN-IACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~i~~d~~~~  123 (170)
                      +++.|||+|||+|.+++..|+.. ..+|+|||-|.-+ +.|.+.+...      ++.+ |+++++.+.+.
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N------~~~~ii~vi~gkvEdi  121 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDN------GLEDVITVIKGKVEDI  121 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhc------CccceEEEeecceEEE
Confidence            36899999999999999999986 4699999988766 8888887764      5666 88888887764

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.25  E-value=3e-06  Score=70.06  Aligned_cols=42  Identities=14%  Similarity=0.156  Sum_probs=35.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      ++.+|||||||.|.++..|+...+ ..|+|||-+...+...+.
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~  156 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEA  156 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHH
Confidence            378999999999999999999865 489999999887666443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.23  E-value=4.2e-07  Score=72.37  Aligned_cols=41  Identities=22%  Similarity=0.340  Sum_probs=36.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      -.++||||||||-++..+-.+.  .+++|||||+.|+++|.++
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eK  166 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEK  166 (287)
T ss_pred             cceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhc
Confidence            4799999999999999998884  3599999999999999887

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.21  E-value=3e-06  Score=67.62  Aligned_cols=66  Identities=9%  Similarity=0.059  Sum_probs=49.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHH------HHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVA------ALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~------~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+||+.|||.|.-+.+||..  +..|+|+|+|+.+|+.+.+...      ..+........+|+++++|+.+.
T Consensus        44 ~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l  115 (226)
T PRK13256         44 SSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL  115 (226)
T ss_pred             CCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence            579999999999999999988  5679999999999999866321      00000000124789999998875

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.14  E-value=8.9e-06  Score=63.98  Aligned_cols=68  Identities=16%  Similarity=0.261  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhc---CCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQ---NKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~---~~~~~~nv~~i~~d~~~  122 (170)
                      ++..++|||||.|...+.+|..++-...+|||+.+...+.|+...+..+..   .+-....+.+.++|..+
T Consensus        42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~  112 (205)
T PF08123_consen   42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD  112 (205)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence            468999999999999999998876556999999999999998776554321   11123468888888654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.14  E-value=9.9e-06  Score=64.51  Aligned_cols=57  Identities=19%  Similarity=0.350  Sum_probs=47.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+|||||+|.|.++..+++.+|+.+++.+|+ |+.++.+++    .        ++|+++.+|..+.+|
T Consensus       101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~--------~rv~~~~gd~f~~~P  157 (241)
T PF00891_consen  101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----A--------DRVEFVPGDFFDPLP  157 (241)
T ss_dssp             SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----T--------TTEEEEES-TTTCCS
T ss_pred             ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----c--------cccccccccHHhhhc
Confidence            46899999999999999999999999999998 888888776    1        579999999876554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.13  E-value=5.1e-06  Score=66.35  Aligned_cols=39  Identities=18%  Similarity=0.229  Sum_probs=34.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDY   94 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~   94 (170)
                      ++.+|||+|||+|.++..+++. +...|+|||+++.|+..
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence            3678999999999999999987 34589999999988775

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.11  E-value=2.4e-05  Score=60.54  Aligned_cols=59  Identities=22%  Similarity=0.245  Sum_probs=53.6

Q ss_pred             eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +++|||+|.|.=++-+|-.+|+.+++.+|.+.+-+...+.-+.++      +++|++++++.+.+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L------~L~nv~v~~~R~E~  109 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL------GLSNVEVINGRAEE  109 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH------T-SSEEEEES-HHH
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh------CCCCEEEEEeeecc
Confidence            799999999999999999999999999999999999999999888      78999999999988

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG3010|consensus

Probab=98.09  E-value=1.7e-06  Score=69.24  Aligned_cols=41  Identities=12%  Similarity=0.150  Sum_probs=36.4

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~   99 (170)
                      ..++|+|||+|.-++.+|..+.  +|+|+|+|++|++.|++.-
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~   75 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHP   75 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCC
Confidence            4899999999998999998865  4999999999999998764

>PLN02823 spermine synthase

Probab=98.09  E-value=5.2e-06  Score=69.88  Aligned_cols=68  Identities=15%  Similarity=0.083  Sum_probs=53.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+||.||+|.|..+.++.+..+..+++.||+++++++.|++........  -..++++++.+|+..++.
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--~~dprv~v~~~Da~~~L~  171 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--FCDKRLELIINDARAELE  171 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--ccCCceEEEEChhHHHHh
Confidence            46899999999999999888655568999999999999999876431000  013679999999988764

>KOG2730|consensus

Probab=98.08  E-value=1.5e-06  Score=68.70  Aligned_cols=76  Identities=17%  Similarity=0.228  Sum_probs=61.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC-Cchhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY-FRKAQVR  134 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~-f~~~~l~  134 (170)
                      .+.|+|.=||-|..++..|..+|.  |++|||++.-+..|++|++-.     |--++|.|+++|..+....+ |.+.-++
T Consensus        95 ~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiY-----GI~~rItFI~GD~ld~~~~lq~~K~~~~  167 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVY-----GVPDRITFICGDFLDLASKLKADKIKYD  167 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceee-----cCCceeEEEechHHHHHHHHhhhhheee
Confidence            478999999999999999999765  999999999999999998876     44457999999998765433 4444444


Q ss_pred             hhHh
Q psy13087        135 RCFA  138 (170)
Q Consensus       135 ~i~~  138 (170)
                      .+|.
T Consensus       168 ~vf~  171 (263)
T KOG2730|consen  168 CVFL  171 (263)
T ss_pred             eeec
Confidence            5554

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.07  E-value=1.5e-05  Score=61.66  Aligned_cols=77  Identities=17%  Similarity=0.175  Sum_probs=62.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      +.++||+=+|+|.++++++.+.. ..++.||.+.+++...++|++.+     +...+++++..|+..++...-..+.+|.
T Consensus        44 g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l-----~~~~~~~~~~~da~~~L~~~~~~~~FDl  117 (187)
T COG0742          44 GARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKAL-----GLEGEARVLRNDALRALKQLGTREPFDL  117 (187)
T ss_pred             CCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHh-----CCccceEEEeecHHHHHHhcCCCCcccE
Confidence            68999999999999999998854 58999999999999999999887     3346799999999977654333334565


Q ss_pred             hHh
Q psy13087        136 CFA  138 (170)
Q Consensus       136 i~~  138 (170)
                      ||+
T Consensus       118 Vfl  120 (187)
T COG0742         118 VFL  120 (187)
T ss_pred             EEe
Confidence            554

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.03  E-value=1.8e-05  Score=66.46  Aligned_cols=47  Identities=21%  Similarity=0.325  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      ++.+|||||||.|.-+........ ..++|+||+.+.|+.|+++.+..
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~  108 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQL  108 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHh
Confidence            468999999998886666666533 48999999999999999998554

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG0820|consensus

Probab=98.03  E-value=1.9e-05  Score=64.29  Aligned_cols=65  Identities=18%  Similarity=0.235  Sum_probs=53.9

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+.+.|||+|-|||.++..|.+.  +.+|+++|+++.|+....++.+..     .....++++.||.....
T Consensus        56 ~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gt-----p~~~kLqV~~gD~lK~d  120 (315)
T KOG0820|consen   56 LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGT-----PKSGKLQVLHGDFLKTD  120 (315)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCC-----CccceeeEEecccccCC
Confidence            456799999999999999999988  467999999999999998887543     11246999999998754

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.02  E-value=1.2e-05  Score=65.30  Aligned_cols=59  Identities=20%  Similarity=0.313  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++..|||||.|.|.++..+++..  .++++||+++.++...+++..        ..+|++++.+|+...
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--------~~~~~~vi~~D~l~~   88 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--------SNPNVEVINGDFLKW   88 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--------TCSSEEEEES-TTTS
T ss_pred             CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--------hcccceeeecchhcc
Confidence            36899999999999999999986  689999999999998887643        247899999998864

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.00  E-value=2.6e-05  Score=60.27  Aligned_cols=63  Identities=21%  Similarity=0.234  Sum_probs=50.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l~  125 (170)
                      +.++||+-||+|.+++++..+. ...|+.||.++.++...++|++..      +.. ++.++.+|+...+.
T Consensus        43 g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l------~~~~~~~v~~~d~~~~l~  106 (183)
T PF03602_consen   43 GARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKL------GLEDKIRVIKGDAFKFLL  106 (183)
T ss_dssp             T-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHH------T-GGGEEEEESSHHHHHH
T ss_pred             CCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHh------CCCcceeeeccCHHHHHH
Confidence            6899999999999999988774 358999999999999999999987      333 59999999887663

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.97  E-value=3.2e-05  Score=67.46  Aligned_cols=62  Identities=18%  Similarity=0.190  Sum_probs=46.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhC----CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF----PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~----p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~  123 (170)
                      ...|+|||||+|.+....++..    ...+|++||.++.++...+++++..      +. ++|+++++|..+.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n------~w~~~V~vi~~d~r~v  253 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN------GWGDKVTVIHGDMREV  253 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT------TTTTTEEEEES-TTTS
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc------CCCCeEEEEeCcccCC
Confidence            4689999999999987665543    3469999999999998877775553      33 6799999998865

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.97  E-value=2.2e-05  Score=59.98  Aligned_cols=62  Identities=10%  Similarity=0.092  Sum_probs=40.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcch
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA  120 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~  120 (170)
                      ++.+|||||||+|..++.+|+..+...|+..|.++ .+...+.|++....   ....++.+...|.
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~W  106 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDW  106 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--T
T ss_pred             CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEe
Confidence            36899999999999999999986667999999999 99999999876310   0234567666554

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG1975|consensus

Probab=97.97  E-value=2.1e-05  Score=65.47  Aligned_cols=68  Identities=19%  Similarity=0.291  Sum_probs=49.3

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++...++|+|||.|.-++..-+.. -..++|+||.+..|+.|+++.+.+......-.=.+.|+.+|...
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~  183 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK  183 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence            346889999999999777766553 23799999999999999999877633211111236788887653

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.95  E-value=1.5e-05  Score=63.28  Aligned_cols=66  Identities=12%  Similarity=0.153  Sum_probs=47.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH-hh-c----CCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL-RS-Q----NKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~-~~-~----~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+||..|||.|.-+..||..  +.+|+|+|+|+.+++.+.+..... .. .    ......+|++..+|+...
T Consensus        38 ~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l  109 (218)
T PF05724_consen   38 GGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL  109 (218)
T ss_dssp             SEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred             CCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence            569999999999999999987  578999999999999985442210 00 0    001224789999998874

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.93  E-value=7.4e-05  Score=61.51  Aligned_cols=64  Identities=17%  Similarity=0.171  Sum_probs=57.0

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCC--CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCe-EEEEcchhhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPS--TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENI-ACIRTNAMKY  123 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~--~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~i~~d~~~~  123 (170)
                      .+.-+||||.||.|.+.+.+...+|.  ..+.-.|.|+..|+..++.+++.      ++.++ +|.++|+.+.
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~------gL~~i~~f~~~dAfd~  200 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER------GLEDIARFEQGDAFDR  200 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc------CCccceEEEecCCCCH
Confidence            34679999999999999999999986  68999999999999999999886      77776 9999998864

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.91  E-value=1.4e-05  Score=62.12  Aligned_cols=59  Identities=20%  Similarity=0.254  Sum_probs=52.2

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ..+.|+|+|+|.+++-+|+.  .-+|++||.++...+.|.+|+.-      +++.|+.++.+|+..+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v------~g~~n~evv~gDA~~y   92 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHV------PGDVNWEVVVGDARDY   92 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCC------CCCcceEEEecccccc
Confidence            68999999999999998887  34799999999999999999744      4788999999999875

>KOG1663|consensus

Probab=97.91  E-value=1.4e-05  Score=63.47  Aligned_cols=107  Identities=15%  Similarity=0.240  Sum_probs=82.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCC---ch
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYF---RK  130 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f---~~  130 (170)
                      ..+++||||.=||..++..|...| +.+|+++|++++..+.+.+..+..     +....|.++++.+.+.|+...   ..
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a-----gv~~KI~~i~g~a~esLd~l~~~~~~  147 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA-----GVDHKITFIEGPALESLDELLADGES  147 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc-----cccceeeeeecchhhhHHHHHhcCCC
Confidence            368999999988888888888876 459999999999999998877765     455679999999988775443   45


Q ss_pred             hhhhhhHhhhcCCccccc-----hhhhcccccccChhhhhhc
Q psy13087        131 AQVRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKA  167 (170)
Q Consensus       131 ~~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~  167 (170)
                      +.+|.+|+- ..+--|.|     +.+++-++.++.+|..-+|
T Consensus       148 ~tfDfaFvD-adK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G  188 (237)
T KOG1663|consen  148 GTFDFAFVD-ADKDNYSNYYERLLRLLRVGGVIVVDNVLWPG  188 (237)
T ss_pred             CceeEEEEc-cchHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence            667777763 33344444     6888888888888876655

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.91  E-value=4.2e-05  Score=65.31  Aligned_cols=63  Identities=16%  Similarity=0.156  Sum_probs=54.8

Q ss_pred             CeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      .+|||+-||+|..++.++...++ ..|+++|+++++++.+++|++..      ...++.++++|+...+.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N------~~~~~~v~~~Da~~~l~  109 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN------SVENIEVPNEDAANVLR  109 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEchhHHHHHH
Confidence            58999999999999999987533 48999999999999999999775      56689999999987764

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.84  E-value=8.4e-05  Score=65.24  Aligned_cols=77  Identities=8%  Similarity=0.091  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQ  132 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~  132 (170)
                      +++.+|||+|||.|.=+..+|.... ...++++|+++..+...+++++++      ++.||.+...|+.... ..+ ++.
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~------G~~nv~v~~~D~~~~~-~~~-~~~  183 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC------GVSNVALTHFDGRVFG-AAL-PET  183 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCchhhhh-hhc-hhh
Confidence            4578999999999999999998764 358999999999999999999987      7789999999987532 222 234


Q ss_pred             hhhhHh
Q psy13087        133 VRRCFA  138 (170)
Q Consensus       133 l~~i~~  138 (170)
                      +|+|+.
T Consensus       184 fD~ILv  189 (470)
T PRK11933        184 FDAILL  189 (470)
T ss_pred             cCeEEE
Confidence            666665

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.83  E-value=6.6e-05  Score=68.90  Aligned_cols=63  Identities=21%  Similarity=0.256  Sum_probs=51.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC------------------------------------------CCeEEEEECCHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP------------------------------------------STLILGLEIRVKVSD   93 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p------------------------------------------~~~v~GvDis~~~i~   93 (170)
                      +..++|-+||+|.+++++|....                                          ...++|+|+++.+++
T Consensus       191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~  270 (702)
T PRK11783        191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ  270 (702)
T ss_pred             CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence            57899999999999999987411                                          136999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         94 YVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        94 ~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      .|++|+...     +..+.|.+.++|+.+.
T Consensus       271 ~A~~N~~~~-----g~~~~i~~~~~D~~~~  295 (702)
T PRK11783        271 AARKNARRA-----GVAELITFEVKDVADL  295 (702)
T ss_pred             HHHHHHHHc-----CCCcceEEEeCChhhc
Confidence            999999886     2224589999998764

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.79  E-value=7.5e-05  Score=59.14  Aligned_cols=85  Identities=18%  Similarity=0.152  Sum_probs=68.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc--C-C-----
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP--N-Y-----  127 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~--~-~-----  127 (170)
                      +.+++|||+|.|.=++-+|-.+|+.+|+-+|...+-+...+.-..++      +++|++++++.++++-.  . |     
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL------~L~nv~i~~~RaE~~~~~~~~~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL------GLENVEIVHGRAEEFGQEKKQYDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh------CCCCeEEehhhHhhcccccccCcEEEe
Confidence            47999999999999999999999999999999999999999988888      78999999999988653  1 2     


Q ss_pred             ---CchhhhhhhHhhhcCCccc
Q psy13087        128 ---FRKAQVRRCFANCILNSQY  146 (170)
Q Consensus       128 ---f~~~~l~~i~~~~~~~g~~  146 (170)
                         -+-..+.......+++|+.
T Consensus       142 RAva~L~~l~e~~~pllk~~g~  163 (215)
T COG0357         142 RAVASLNVLLELCLPLLKVGGG  163 (215)
T ss_pred             ehccchHHHHHHHHHhcccCCc
Confidence               1333455555556666553

>KOG4300|consensus

Probab=97.78  E-value=3.3e-05  Score=60.80  Aligned_cols=59  Identities=15%  Similarity=0.232  Sum_probs=46.9

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeE-EEEcchhh
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIA-CIRTNAMK  122 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~-~i~~d~~~  122 (170)
                      ..|||||||+|..-..+- .-|...|+++|-++.|-+.|.+.+++.      ...++. |+.++...
T Consensus        78 ~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~------k~~~~~~fvva~ge~  137 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEK------KPLQVERFVVADGEN  137 (252)
T ss_pred             cceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhc------cCcceEEEEeechhc
Confidence            468999999999876654 337789999999999999999998774      334555 77777765

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.77  E-value=5.7e-05  Score=63.60  Aligned_cols=79  Identities=13%  Similarity=0.193  Sum_probs=64.0

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC-eEEEEcchhhhccCCCchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN-IACIRTNAMKYLPNYFRKAQ  132 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~i~~d~~~~l~~~f~~~~  132 (170)
                      ..+.+|||.=+|-|.|++.+|+... ..|+++||+|.++++.++|++..      ...+ |..+++|+....+..   +.
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN------~v~~~v~~i~gD~rev~~~~---~~  256 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLN------KVEGRVEPILGDAREVAPEL---GV  256 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhc------CccceeeEEeccHHHhhhcc---cc
Confidence            4489999999999999999998853 34999999999999999999774      5555 899999999877543   55


Q ss_pred             hhhhHhhhcC
Q psy13087        133 VRRCFANCIL  142 (170)
Q Consensus       133 l~~i~~~~~~  142 (170)
                      .|+|+.+++.
T Consensus       257 aDrIim~~p~  266 (341)
T COG2520         257 ADRIIMGLPK  266 (341)
T ss_pred             CCEEEeCCCC
Confidence            6666665544

>KOG1661|consensus

Probab=97.69  E-value=0.00013  Score=57.54  Aligned_cols=73  Identities=18%  Similarity=0.240  Sum_probs=54.6

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhh----cCCCCCCCeEEEEcchhhhcc
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRS----QNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~----~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ++++.+.||||+|+|.++..++...  ++...+|||.-++.|+++++++++.-.    ...-...++.++.+|.....+
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~  158 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA  158 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence            4568999999999999999999764  344559999999999999999876411    001123468888888876544

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.66  E-value=0.00024  Score=55.86  Aligned_cols=62  Identities=16%  Similarity=0.183  Sum_probs=50.8

Q ss_pred             EEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         59 FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        59 vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      |.||||--|.+.++|.+...-..++++|+++.-++.|+++++..     +..+.|.+..+|..+.++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~-----~l~~~i~~rlgdGL~~l~   62 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY-----GLEDRIEVRLGDGLEVLK   62 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-----T-TTTEEEEE-SGGGG--
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCcccEEEEECCcccccC
Confidence            68999999999999999976568999999999999999999886     334679999999877653

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.64  E-value=5.5e-05  Score=63.60  Aligned_cols=61  Identities=18%  Similarity=0.323  Sum_probs=50.0

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEc-chhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT-NAMK  122 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~-d~~~  122 (170)
                      .++..|||==||||.+++++...  +++++|.|++..|++-|+.|++..      +.+...++.. |+..
T Consensus       196 ~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y------~i~~~~~~~~~Da~~  257 (347)
T COG1041         196 KRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYY------GIEDYPVLKVLDATN  257 (347)
T ss_pred             ccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhh------CcCceeEEEeccccc
Confidence            34789999999999999998877  678999999999999999999887      3445545544 6553

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.60  E-value=9.4e-05  Score=59.67  Aligned_cols=69  Identities=19%  Similarity=0.179  Sum_probs=52.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccC
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN  126 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~  126 (170)
                      ..+||=||-|.|..+.++.+..+..+++.||+++.+++.|++-.......  -.-++++++.+|+..++.+
T Consensus        77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~  145 (246)
T PF01564_consen   77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKE  145 (246)
T ss_dssp             T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHT
T ss_pred             cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHh
Confidence            57999999999999999997765568999999999999999876543110  0136799999998887753

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.60  E-value=8.2e-05  Score=63.82  Aligned_cols=64  Identities=9%  Similarity=0.124  Sum_probs=55.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC--CCeEEEEcchhhhccC
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY--ENIACIRTNAMKYLPN  126 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~i~~d~~~~l~~  126 (170)
                      +++|||+=|=||.+++.+|... ..+|++||+|..+++.|++|.+-.      ++  ..+.++++|+.+++..
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LN------g~~~~~~~~i~~Dvf~~l~~  283 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELN------GLDGDRHRFIVGDVFKWLRK  283 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhc------CCCccceeeehhhHHHHHHH
Confidence            7899999999999999999763 338999999999999999998764      43  4588999999998754

>KOG1500|consensus

Probab=97.59  E-value=0.0002  Score=60.30  Aligned_cols=61  Identities=20%  Similarity=0.205  Sum_probs=48.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +..|||+|||+|.+++.+|... ..+|++||-| +|.++|++-++..     +..++|.+|.+-+++.
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N-----~~~~rItVI~GKiEdi  238 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASN-----NLADRITVIPGKIEDI  238 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcC-----CccceEEEccCccccc
Confidence            5799999999999999988875 4589999976 5778888877653     3446788888877654

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.47  E-value=0.00019  Score=63.63  Aligned_cols=47  Identities=19%  Similarity=0.224  Sum_probs=40.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC--------CCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP--------STLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p--------~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      ..+|||.|||+|.+++.++...+        ..+++|+|+++.++..|+.++...
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~   86 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF   86 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc
Confidence            46899999999999999988764        257999999999999999988664

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK10742 putative methyltransferase; Provisional

Probab=97.44  E-value=0.00048  Score=55.64  Aligned_cols=78  Identities=18%  Similarity=0.231  Sum_probs=60.6

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCC-CC-C-CCeEEEEcchhhhccCCCchhhh
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNK-GQ-Y-ENIACIRTNAMKYLPNYFRKAQV  133 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~-~~-~-~nv~~i~~d~~~~l~~~f~~~~l  133 (170)
                      ++|||+=+|+|..++.+|..  ++.|+++|.++.+....+++++....... +. + .+++++++|+.++|...  ..++
T Consensus        90 p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~--~~~f  165 (250)
T PRK10742         90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--TPRP  165 (250)
T ss_pred             CEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC--CCCC
Confidence            49999999999999999988  56799999999999999999887421100 11 1 57999999999998652  2256


Q ss_pred             hhhHh
Q psy13087        134 RRCFA  138 (170)
Q Consensus       134 ~~i~~  138 (170)
                      |.||+
T Consensus       166 DVVYl  170 (250)
T PRK10742        166 QVVYL  170 (250)
T ss_pred             cEEEE
Confidence            66665

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.44  E-value=0.0004  Score=57.55  Aligned_cols=59  Identities=15%  Similarity=0.171  Sum_probs=38.4

Q ss_pred             CCeEEEEcCccchHH-HHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcc
Q psy13087         56 KVEFVDVGCGYGGLL-VTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN  119 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~-~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d  119 (170)
                      .-++||||||.-.+- +..++.+ +.+++|.||++..++.|+++++..    ++.-++|+++...
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N----~~L~~~I~l~~~~  162 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERN----PNLESRIELRKQK  162 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-----T-TTTEEEEE--
T ss_pred             ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhc----cccccceEEEEcC
Confidence            468999999998764 4444444 799999999999999999999763    1123468877653

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.41  E-value=0.0003  Score=55.24  Aligned_cols=45  Identities=11%  Similarity=0.144  Sum_probs=40.7

Q ss_pred             eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      +|||||||||..+.++|..+|.....--|.++......+..+.+.
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~   72 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA   72 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc
Confidence            599999999999999999999999999999999987777777664

The function of this family is unknown.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.41  E-value=0.00021  Score=58.89  Aligned_cols=65  Identities=12%  Similarity=0.195  Sum_probs=51.7

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC--CCeEEEEcchhhhcc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY--ENIACIRTNAMKYLP  125 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~i~~d~~~~l~  125 (170)
                      .++.+|||+=|=||.|++.++.. ....|+.||+|..+++.|++|.+..      ++  ++++++..|+.+++.
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lN------g~~~~~~~~~~~Dvf~~l~  188 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALN------GLDLDRHRFIQGDVFKFLK  188 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHT------T-CCTCEEEEES-HHHHHH
T ss_pred             cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHc------CCCccceEEEecCHHHHHH
Confidence            34789999999999999998765 3458999999999999999998764      43  579999999998764

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.38  E-value=0.00036  Score=59.48  Aligned_cols=76  Identities=17%  Similarity=0.243  Sum_probs=59.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCC--------------------------------C-------eEEEEECCHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPS--------------------------------T-------LILGLEIRVKVSDYVI   96 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~--------------------------------~-------~v~GvDis~~~i~~a~   96 (170)
                      +..++|==||+|.+++++|...++                                .       .++|+|+++.+++.|+
T Consensus       192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak  271 (381)
T COG0116         192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK  271 (381)
T ss_pred             CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence            357999999999999999998753                                1       2789999999999999


Q ss_pred             HHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhHhh
Q psy13087         97 DRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFAN  139 (170)
Q Consensus        97 ~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~  139 (170)
                      .|+++.     +..+-|.|.++|+...-+. +  ++.+.+..|
T Consensus       272 ~NA~~A-----Gv~d~I~f~~~d~~~l~~~-~--~~~gvvI~N  306 (381)
T COG0116         272 ANARAA-----GVGDLIEFKQADATDLKEP-L--EEYGVVISN  306 (381)
T ss_pred             HHHHhc-----CCCceEEEEEcchhhCCCC-C--CcCCEEEeC
Confidence            999887     5556799999999864332 2  444555544

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.38  E-value=0.00064  Score=56.95  Aligned_cols=62  Identities=11%  Similarity=0.125  Sum_probs=45.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhC----CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEE--EEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF----PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIAC--IRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~----p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~--i~~d~~~~  123 (170)
                      +..++|+|||+|.=+..+....    ....+++||||.++++.+.+++...      .+++|.+  +.+|..+.
T Consensus        77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~------~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG------NFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc------cCCCeEEEEEEecHHHH
Confidence            5689999999999655444332    2468999999999999999998732      4566665  67766543

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.37  E-value=0.00043  Score=56.99  Aligned_cols=67  Identities=19%  Similarity=0.280  Sum_probs=55.8

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCC-CCCeEEEEcchhhhccC
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQ-YENIACIRTNAMKYLPN  126 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~-~~nv~~i~~d~~~~l~~  126 (170)
                      .+||-||-|.|..+.++.+..+-.+++.|||+++.++.|++-......   +. -+++.++.+|+.+++.+
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~---~~~dpRv~i~i~Dg~~~v~~  145 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSG---GADDPRVEIIIDDGVEFLRD  145 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccc---ccCCCceEEEeccHHHHHHh
Confidence            599999999999999999988777999999999999999988755411   12 36789999998888753

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.37  E-value=0.00065  Score=57.65  Aligned_cols=79  Identities=11%  Similarity=0.209  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCC--CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPS--TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKA  131 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~--~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~  131 (170)
                      +++.+|||++++.|.=+..+|...++  ..|+++|+++.-+...++|++++      +..|+.+++.|+......+...+
T Consensus       155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl------G~~nv~~~~~d~~~~~~~~~~~~  228 (355)
T COG0144         155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL------GVRNVIVVNKDARRLAELLPGGE  228 (355)
T ss_pred             CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc------CCCceEEEecccccccccccccC
Confidence            45799999999999999999988654  45799999999999999999998      77888888888875433333333


Q ss_pred             hhhhhHh
Q psy13087        132 QVRRCFA  138 (170)
Q Consensus       132 ~l~~i~~  138 (170)
                      .+|+|..
T Consensus       229 ~fD~iLl  235 (355)
T COG0144         229 KFDRILL  235 (355)
T ss_pred             cCcEEEE
Confidence            4666655

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.36  E-value=0.0012  Score=54.87  Aligned_cols=62  Identities=13%  Similarity=0.335  Sum_probs=53.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +..++|-=||.|..+..+++..++..|+|+|.++.++..|+++++..       ..++.+++++...+.
T Consensus        21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-------~~R~~~i~~nF~~l~   82 (305)
T TIGR00006        21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-------EGRVVLIHDNFANFF   82 (305)
T ss_pred             CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-------CCcEEEEeCCHHHHH
Confidence            57999999999999999999887789999999999999999987643       257999999887643

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.24  E-value=0.00048  Score=56.84  Aligned_cols=46  Identities=24%  Similarity=0.343  Sum_probs=37.8

Q ss_pred             CCeEEEEcCccchHHHHHhhh-------CCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPM-------FPSTLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~-------~p~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      +.+|+|-+||+|.|++++...       .+...++|+|+++.++..|+.++.-
T Consensus        47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l   99 (311)
T PF02384_consen   47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL   99 (311)
T ss_dssp             TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred             cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence            568999999999999998874       3667999999999999999887643

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG2915|consensus

Probab=97.19  E-value=0.0016  Score=53.34  Aligned_cols=86  Identities=10%  Similarity=0.153  Sum_probs=65.8

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKA  131 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~  131 (170)
                      +.++.+|+|-|+|+|.++.++|+.. |..+++..|+.+...+.|.+..++.     +--+|+.+.+-|+...= ......
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-----gi~~~vt~~hrDVc~~G-F~~ks~  176 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-----GIGDNVTVTHRDVCGSG-FLIKSL  176 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-----CCCcceEEEEeecccCC-cccccc
Confidence            5678999999999999999999976 6668999999999999998888876     44578999888766421 011234


Q ss_pred             hhhhhHhhhcCCc
Q psy13087        132 QVRRCFANCILNS  144 (170)
Q Consensus       132 ~l~~i~~~~~~~g  144 (170)
                      ..|-+|+-.|.|+
T Consensus       177 ~aDaVFLDlPaPw  189 (314)
T KOG2915|consen  177 KADAVFLDLPAPW  189 (314)
T ss_pred             ccceEEEcCCChh
Confidence            5566666666664

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.16  E-value=0.0013  Score=53.48  Aligned_cols=41  Identities=20%  Similarity=0.380  Sum_probs=36.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      ..++||||.|.|..+..++..+..  |++.|+|+.|..+.+++
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~k  135 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSKK  135 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHhC
Confidence            468999999999999999999865  99999999997766554

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.11  E-value=0.00019  Score=57.48  Aligned_cols=75  Identities=13%  Similarity=0.082  Sum_probs=56.0

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH--HHHhhcCCCCCCCeEEEEcchhhhccCCCchh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV--AALRSQNKGQYENIACIRTNAMKYLPNYFRKA  131 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~--~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~  131 (170)
                      .++.+|||.+.|-|.+++..+++. ..+|+.||.++..++.|.-|=  ..+      .-.+|+++.+|+.+.+.+ |.++
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l------~~~~i~iilGD~~e~V~~-~~D~  204 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSREL------FEIAIKIILGDAYEVVKD-FDDE  204 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccc------cccccEEecccHHHHHhc-CCcc
Confidence            358899999999999999999884 348999999999999987652  111      113689999999987754 3344


Q ss_pred             hhhhh
Q psy13087        132 QVRRC  136 (170)
Q Consensus       132 ~l~~i  136 (170)
                      ++|.+
T Consensus       205 sfDaI  209 (287)
T COG2521         205 SFDAI  209 (287)
T ss_pred             ccceE
Confidence            44433

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.06  E-value=0.0013  Score=53.88  Aligned_cols=46  Identities=17%  Similarity=0.208  Sum_probs=38.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCC-eEEEEECCHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPST-LILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~-~v~GvDis~~~i~~a~~~~~~  101 (170)
                      ..+|||+|||.|..+.++...++.. ++++||.|+.|++.++.-.+.
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~   80 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA   80 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence            4689999999999888888877733 799999999999998876544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.05  E-value=0.0041  Score=51.17  Aligned_cols=65  Identities=18%  Similarity=0.187  Sum_probs=56.1

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      .++..|||+++|.|.=+..+|.... ...+++.|+++..+...+++++++      +..|+.++..|+....
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~------g~~~v~~~~~D~~~~~  149 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL------GVFNVIVINADARKLD  149 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT------T-SSEEEEESHHHHHH
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc------CCceEEEEeecccccc
Confidence            3478999999999999999998875 569999999999999999999887      7789999988887653

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG2361|consensus

Probab=96.97  E-value=0.00052  Score=55.16  Aligned_cols=44  Identities=18%  Similarity=0.376  Sum_probs=40.0

Q ss_pred             eEEEEcCccchHHHHHhhhCCC--CeEEEEECCHHHHHHHHHHHHH
Q psy13087         58 EFVDVGCGYGGLLVTLSPMFPS--TLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~p~--~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      +|||||||.|....-+.+..|+  ..+++.|.|+.+++..+++...
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~  119 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY  119 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc
Confidence            7999999999999999998877  7999999999999999887643

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=96.92  E-value=0.00082  Score=51.14  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=30.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVK   90 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~   90 (170)
                      +.+||||||+.|.|+..+.... +...|+|||+.+.
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            4899999999999999999986 4579999999877

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.90  E-value=0.0044  Score=50.11  Aligned_cols=61  Identities=16%  Similarity=0.306  Sum_probs=46.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ..+|+|||||.=-+++-.....++..++|+||+..+++....-+..+      + .+..+...|....
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l------~-~~~~~~v~Dl~~~  166 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL------G-VPHDARVRDLLSD  166 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT------T--CEEEEEE-TTTS
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh------C-CCcceeEeeeecc
Confidence            57999999999999998887778889999999999999998887765      2 4566666666654

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.89  E-value=0.002  Score=54.36  Aligned_cols=57  Identities=16%  Similarity=0.336  Sum_probs=41.1

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      .++..+|||||++|.++..+.+.  +..|+|||..+ |-.    ++.        ..++|..++.|...+.+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l~~----~L~--------~~~~V~h~~~d~fr~~p  266 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-MAQ----SLM--------DTGQVEHLRADGFKFRP  266 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-cCH----hhh--------CCCCEEEEeccCcccCC
Confidence            45789999999999999999988  45899999554 211    111        23567777777666554

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=96.75  E-value=0.005  Score=47.12  Aligned_cols=56  Identities=13%  Similarity=0.194  Sum_probs=45.7

Q ss_pred             CCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.-|||+|-|||-++.++.++ .+...++.||.|++.+...++.           ++.+.++++|+..
T Consensus        49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----------~p~~~ii~gda~~  105 (194)
T COG3963          49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----------YPGVNIINGDAFD  105 (194)
T ss_pred             CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----------CCCccccccchhh
Confidence            567999999999999998775 3566899999999998877654           3567788888775

>KOG1501|consensus

Probab=96.71  E-value=0.0035  Score=54.53  Aligned_cols=56  Identities=21%  Similarity=0.202  Sum_probs=45.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIR  117 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~  117 (170)
                      ...|||||+|||-++.-+++...+ .|+++|.-..|++.|++-..+.     +-.++|.+|.
T Consensus        67 kv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kn-----g~SdkI~vIn  122 (636)
T KOG1501|consen   67 KVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKN-----GMSDKINVIN  122 (636)
T ss_pred             eEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcC-----CCccceeeec
Confidence            457999999999999998888654 7999999999999998887664     2335676664

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.71  E-value=0.0065  Score=48.39  Aligned_cols=63  Identities=13%  Similarity=0.149  Sum_probs=48.2

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.++.+||-||..+|.....++.... +..|+|||.|+...+..-.-+++.        +||..+-.|+...
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--------~NIiPIl~DAr~P  134 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--------PNIIPILEDARHP  134 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--------TTEEEEES-TTSG
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--------CceeeeeccCCCh
Confidence            45689999999999999999999764 779999999997766665444443        7899888998753

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.65  E-value=0.0053  Score=42.25  Aligned_cols=40  Identities=23%  Similarity=0.497  Sum_probs=30.3

Q ss_pred             EEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHH
Q psy13087         59 FVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        59 vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~   99 (170)
                      ++|+|||+|... .++...+. ..++|+|+++.++..++...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARA   92 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhh
Confidence            999999999976 44444332 37999999999999854443

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.64  E-value=0.0015  Score=46.20  Aligned_cols=32  Identities=34%  Similarity=0.513  Sum_probs=26.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRV   89 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~   89 (170)
                      ....+|||||.|-+.--|...  +..-.|+|...
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R~   90 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSE--GYPGWGIDARR   90 (112)
T ss_pred             CCceEEccCCchHHHHHHHhC--CCCcccccccc
Confidence            468999999999988888876  56789999753

; GO: 0008168 methyltransferase activity

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.64  E-value=0.00027  Score=49.06  Aligned_cols=72  Identities=11%  Similarity=0.209  Sum_probs=22.7

Q ss_pred             EEEcCccchHHHHHhhhCCCC---eEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhh
Q psy13087         60 VDVGCGYGGLLVTLSPMFPST---LILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRC  136 (170)
Q Consensus        60 LDiGCG~G~~~~~la~~~p~~---~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i  136 (170)
                      |||||..|..+..+++..+..   +++++|..+. .+.+.+.+++.     +..+++++++++..+.++.+. .+.++.+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-----~~~~~~~~~~g~s~~~l~~~~-~~~~dli   73 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-----GLSDRVEFIQGDSPDFLPSLP-DGPIDLI   73 (106)
T ss_dssp             --------------------------EEEESS-------------G-----GG-BTEEEEES-THHHHHHHH-H--EEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc-----CCCCeEEEEEcCcHHHHHHcC-CCCEEEE
Confidence            699999999999998876543   6999999996 22333333322     123579999999987765322 4455555


Q ss_pred             Hh
Q psy13087        137 FA  138 (170)
Q Consensus       137 ~~  138 (170)
                      |+
T Consensus        74 ~i   75 (106)
T PF13578_consen   74 FI   75 (106)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>PRK11524 putative methyltransferase; Provisional

Probab=96.57  E-value=0.0062  Score=49.97  Aligned_cols=46  Identities=13%  Similarity=0.050  Sum_probs=41.2

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      .+++.|||-=||+|..++++.+.  +.+++|+|++++.++.|+++++.
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence            45899999999999999997777  56899999999999999999864

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.48  E-value=0.0048  Score=51.46  Aligned_cols=60  Identities=17%  Similarity=0.235  Sum_probs=47.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +..+||-=.|.|..+..+.+..|+..++|+|.++++++.|++++..       ..+++.+++++..+
T Consensus        21 ~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~-------~~~r~~~~~~~F~~   80 (310)
T PF01795_consen   21 GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK-------FDDRFIFIHGNFSN   80 (310)
T ss_dssp             T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC-------CCTTEEEEES-GGG
T ss_pred             CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh-------ccceEEEEeccHHH
Confidence            5799999999999999999999889999999999999999887643       23689999988765

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.43  E-value=0.0062  Score=47.92  Aligned_cols=51  Identities=14%  Similarity=0.204  Sum_probs=40.0

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM  121 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~  121 (170)
                      .++..|+|||+-.|.++..+++.... ..|+|||+.|--                 ..++|.++++|+.
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------~~~~V~~iq~d~~   95 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------PIPGVIFLQGDIT   95 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------cCCCceEEeeecc
Confidence            34789999999999999999998643 469999998752                 3456777777665

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.28  E-value=0.012  Score=46.69  Aligned_cols=64  Identities=17%  Similarity=0.130  Sum_probs=54.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +..+.||||--|.+..++-+.++...+++.|+++..++.|.+++.+.     +..+.+++..+|....+
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~-----~l~~~i~vr~~dgl~~l   80 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN-----NLSERIDVRLGDGLAVL   80 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc-----CCcceEEEeccCCcccc
Confidence            45699999999999999999999889999999999999999999876     34456777777765443

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.28  E-value=0.0064  Score=47.86  Aligned_cols=62  Identities=18%  Similarity=0.186  Sum_probs=53.4

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.++.+||=||..+|......+...++..++|||.|+........-+++.        +||..+..||..
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--------~Ni~PIL~DA~~  135 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--------PNIIPILEDARK  135 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--------CCceeeecccCC
Confidence            56789999999999999999999988778999999999888777766654        688888888874

>KOG4058|consensus

Probab=96.27  E-value=0.0062  Score=45.82  Aligned_cols=62  Identities=19%  Similarity=0.206  Sum_probs=45.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ..+.+|||+|.|.+....|+.. -..-+|+|+++-.+.+++-+.-+.     +.....+|.+-|..++
T Consensus        73 ~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~-----g~~k~trf~RkdlwK~  134 (199)
T KOG4058|consen   73 KGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRA-----GCAKSTRFRRKDLWKV  134 (199)
T ss_pred             CCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHH-----hcccchhhhhhhhhhc
Confidence            4689999999999999988774 357899999999999987665443     1223456665555543

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.27  E-value=0.0097  Score=45.94  Aligned_cols=41  Identities=17%  Similarity=0.176  Sum_probs=34.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      ++..|||-=||+|..+.++...  +.+++|+|++++.++.|++
T Consensus       191 ~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  191 PGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred             cceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence            3789999999999999997777  5689999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK13699 putative methylase; Provisional

Probab=96.13  E-value=0.017  Score=45.97  Aligned_cols=47  Identities=19%  Similarity=0.175  Sum_probs=41.4

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      .++..|||-=||+|..+++..+.  +.+++|+|++++.++.|.+++++.
T Consensus       162 ~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        162 HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence            35789999999999999997766  567999999999999999998764

>PHA01634 hypothetical protein

Probab=96.12  E-value=0.017  Score=42.44  Aligned_cols=45  Identities=13%  Similarity=0.053  Sum_probs=40.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      +.+|+|||.+-|..+++++... ...|+++|.++......+++++.
T Consensus        29 ~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         29 QRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             CCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhh
Confidence            6899999999999999999875 35899999999999999988764

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.11  E-value=0.013  Score=46.61  Aligned_cols=45  Identities=18%  Similarity=0.273  Sum_probs=37.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCC--eEEEEECCHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPST--LILGLEIRVKVSDYVIDRVA  100 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~--~v~GvDis~~~i~~a~~~~~  100 (170)
                      +-.+.|=+||.|.++.-+.-.+++.  .|+|-||++++++.|++|+.
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            4689999999999999998887654  79999999999999999853

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG1122|consensus

Probab=96.06  E-value=0.014  Score=50.35  Aligned_cols=80  Identities=10%  Similarity=0.143  Sum_probs=67.9

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKA  131 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~  131 (170)
                      .+++.+|||.++..|.=+.++|..-.+ ..+++.|.+...+.....++.++      +..|..++..|..++-...|+. 
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl------Gv~ntiv~n~D~~ef~~~~~~~-  311 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL------GVTNTIVSNYDGREFPEKEFPG-  311 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh------CCCceEEEccCcccccccccCc-
Confidence            456899999999999988888876544 48999999999999999999998      7889888888988765566777 


Q ss_pred             hhhhhHhh
Q psy13087        132 QVRRCFAN  139 (170)
Q Consensus       132 ~l~~i~~~  139 (170)
                      ++|+|.+-
T Consensus       312 ~fDRVLLD  319 (460)
T KOG1122|consen  312 SFDRVLLD  319 (460)
T ss_pred             ccceeeec
Confidence            89999875

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.00  E-value=0.0078  Score=48.30  Aligned_cols=78  Identities=17%  Similarity=0.257  Sum_probs=49.4

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCC---CCCCCeEEEEcchhhhccCCCchhhh
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNK---GQYENIACIRTNAMKYLPNYFRKAQV  133 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~---~~~~nv~~i~~d~~~~l~~~f~~~~l  133 (170)
                      ++|||.=+|-|.=++-+|..  +++|+|+|.|+-+....+.-++.......   ....+|+++++|+.++|.  .+..++
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~--~~~~s~  152 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR--QPDNSF  152 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC--CHSS--
T ss_pred             CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh--hcCCCC
Confidence            59999999999999999876  56899999999988877766655432210   012479999999999886  444555


Q ss_pred             hhhHh
Q psy13087        134 RRCFA  138 (170)
Q Consensus       134 ~~i~~  138 (170)
                      |.||+
T Consensus       153 DVVY~  157 (234)
T PF04445_consen  153 DVVYF  157 (234)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            55544

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=95.84  E-value=0.008  Score=47.07  Aligned_cols=60  Identities=13%  Similarity=0.152  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++|||+|+|+|-.++..|+.. ...|+..|+.+..+..+.-|++..      + -+|.+...|...
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~an------g-v~i~~~~~d~~g  138 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAAN------G-VSILFTHADLIG  138 (218)
T ss_pred             ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhc------c-ceeEEeeccccC
Confidence            47899999999999999999875 358999999999988888887653      3 467777777654

>KOG3987|consensus

Probab=95.72  E-value=0.0017  Score=51.40  Aligned_cols=86  Identities=13%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      ..++||||.|.|.++..++..+..  |++.|.|..|..+.+++--.-.....+....+++-..-+...|+..|.+..+-+
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~  190 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLE  190 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHH
Confidence            479999999999999999998754  999999999998877652100000000001122222223344566677766555


Q ss_pred             hHhhhcCC
Q psy13087        136 CFANCILN  143 (170)
Q Consensus       136 i~~~~~~~  143 (170)
                      -.-+.+.|
T Consensus       191 Di~~vl~p  198 (288)
T KOG3987|consen  191 DIHLVLAP  198 (288)
T ss_pred             HHHHHhcc
Confidence            44445555

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.72  E-value=0.017  Score=45.05  Aligned_cols=43  Identities=16%  Similarity=0.226  Sum_probs=29.7

Q ss_pred             CCeEEEEcCccch--HH--HHHhhh----CC-CCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGG--LL--VTLSPM----FP-STLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~--~~--~~la~~----~p-~~~v~GvDis~~~i~~a~~~   98 (170)
                      .-+|+-.||++|.  ++  +.+...    .+ ..+++|.|||+.+++.|++-
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G   83 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG   83 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence            4789999999998  33  333331    12 35899999999999999863

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG4589|consensus

Probab=95.59  E-value=0.02  Score=44.71  Aligned_cols=36  Identities=17%  Similarity=0.328  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECC
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIR   88 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis   88 (170)
                      +.++.+|||+||..|.++.-+-+.. |+..|+|||+-
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll  103 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL  103 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence            3457999999999999998888776 88899999984

>PRK00536 speE spermidine synthase; Provisional

Probab=95.55  E-value=0.14  Score=41.81  Aligned_cols=85  Identities=11%  Similarity=-0.031  Sum_probs=56.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh-----h----ccC
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK-----Y----LPN  126 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~-----~----l~~  126 (170)
                      ..+||=||-|.|..+.++.+. |. +|+.|||++++++.+++-........  .-++++++.. ..+     +    .+.
T Consensus        73 pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~--~DpRv~l~~~-~~~~~~~~fDVIIvDs  147 (262)
T PRK00536         73 LKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVK--NNKNFTHAKQ-LLDLDIKKYDLIICLQ  147 (262)
T ss_pred             CCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhh--cCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence            579999999999999999976 54 89999999999999999554432111  2245665531 111     1    112


Q ss_pred             CCchhhhhhhHhhhcCCccc
Q psy13087        127 YFRKAQVRRCFANCILNSQY  146 (170)
Q Consensus       127 ~f~~~~l~~i~~~~~~~g~~  146 (170)
                      .++++.+..+.. ++.|+|+
T Consensus       148 ~~~~~fy~~~~~-~L~~~Gi  166 (262)
T PRK00536        148 EPDIHKIDGLKR-MLKEDGV  166 (262)
T ss_pred             CCChHHHHHHHH-hcCCCcE
Confidence            355555555444 6666664

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=95.26  E-value=0.062  Score=46.05  Aligned_cols=69  Identities=17%  Similarity=0.341  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCC--CCeEEEEcchhhhcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQY--ENIACIRTNAMKYLP  125 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~i~~d~~~~l~  125 (170)
                      ...+||=+|-|.|--+.++.+ +|+ .+++-||++|+|++.++++..- +..+.+.+  ++++++..|+..++.
T Consensus       289 ~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vl-r~~N~~sf~dpRv~Vv~dDAf~wlr  360 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVL-RALNQGSFSDPRVTVVNDDAFQWLR  360 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHh-hhhccCCccCCeeEEEeccHHHHHH
Confidence            357899999999999999885 574 4899999999999999865322 22222233  569999999998764

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=95.02  E-value=0.05  Score=44.97  Aligned_cols=43  Identities=7%  Similarity=0.102  Sum_probs=32.7

Q ss_pred             CCeEEEEcCccch--HHHHH--hhhCC----CCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGG--LLVTL--SPMFP----STLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~--~~~~l--a~~~p----~~~v~GvDis~~~i~~a~~~   98 (170)
                      .-+|+..||.+|.  +++++  .+..+    +.+|+|+|||+.+++.|++-
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            3699999999998  33333  33222    36899999999999999875

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=94.99  E-value=0.024  Score=44.65  Aligned_cols=60  Identities=15%  Similarity=0.325  Sum_probs=34.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhC----CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF----PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~----p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.|+|+|.-.|..++.+|...    +..+|+||||+-.......  ++.+     .-.++|+++++|..+
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~h-----p~~~rI~~i~Gds~d   96 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESH-----PMSPRITFIQGDSID   96 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG---------TTEEEEES-SSS
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhc-----cccCceEEEECCCCC
Confidence            4799999999999998887643    6679999999654432211  1111     122679999998764

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=94.92  E-value=0.16  Score=42.26  Aligned_cols=61  Identities=13%  Similarity=0.237  Sum_probs=52.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCC-eEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPST-LILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~-~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +...+|.=-|.|..+.++...+|.. +++|+|.++.+++.|+++....       .+++.+++++....
T Consensus        24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------~~r~~~v~~~F~~l   85 (314)
T COG0275          24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------DGRVTLVHGNFANL   85 (314)
T ss_pred             CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------CCcEEEEeCcHHHH
Confidence            5789999999999999999998754 6999999999999999988653       26899999886653

>KOG3178|consensus

Probab=94.75  E-value=0.095  Score=44.27  Aligned_cols=75  Identities=20%  Similarity=0.322  Sum_probs=54.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc----------
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP----------  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~----------  125 (170)
                      -...+|+|.|.|..+..+...+|.  +-|++.+...+..++..+.          +.|..+-+|..+-.|          
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~----------~gV~~v~gdmfq~~P~~daI~mkWi  245 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA----------PGVEHVAGDMFQDTPKGDAIWMKWI  245 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc----------CCcceecccccccCCCcCeEEEEee
Confidence            378999999999999999999887  8899999998888777652          224544455443333          


Q ss_pred             -CCCchhhhhhhHhhhcC
Q psy13087        126 -NYFRKAQVRRCFANCIL  142 (170)
Q Consensus       126 -~~f~~~~l~~i~~~~~~  142 (170)
                       +...++...+++.+|-+
T Consensus       246 LhdwtDedcvkiLknC~~  263 (342)
T KOG3178|consen  246 LHDWTDEDCVKILKNCKK  263 (342)
T ss_pred             cccCChHHHHHHHHHHHH
Confidence             33567777777776544

>KOG1709|consensus

Probab=94.75  E-value=0.075  Score=42.43  Aligned_cols=64  Identities=19%  Similarity=0.125  Sum_probs=50.6

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      .++.+||.||.|.|.....+.+.-|..+ +-||-.++.+.+.+...=.       ...||.++.+-.++.++
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~-------ek~nViil~g~WeDvl~  163 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWR-------EKENVIILEGRWEDVLN  163 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccc-------cccceEEEecchHhhhc
Confidence            4578999999999999999998877654 4489999998887766321       34789999987777654

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=94.63  E-value=0.063  Score=43.99  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=34.9

Q ss_pred             CCeEEEEcCccch----HHHHHhhhCC-----CCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGG----LLVTLSPMFP-----STLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~----~~~~la~~~p-----~~~v~GvDis~~~i~~a~~~   98 (170)
                      .-+|+-.||+||.    +++.+.+..+     ...++|.|||..+++.|+.-
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G  148 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG  148 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence            4689999999997    5555555564     47999999999999999853

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=94.30  E-value=0.033  Score=41.71  Aligned_cols=38  Identities=18%  Similarity=0.296  Sum_probs=28.0

Q ss_pred             EEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         83 LGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        83 ~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +|+|+|++|++.|+++.+...   .+...+|+++++|+.+.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~---~~~~~~i~~~~~d~~~l   38 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKA---RSCYKCIEWIEGDAIDL   38 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhccc---ccCCCceEEEEechhhC
Confidence            589999999999987764320   01235799999998763

>KOG2940|consensus

Probab=94.27  E-value=0.1  Score=42.17  Aligned_cols=42  Identities=14%  Similarity=0.173  Sum_probs=35.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      .+.++|||||-|.+...+.... -.+++-+|.|-.|++.++..
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~  114 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA  114 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc
Confidence            5789999999999999988775 23799999999999887643

>KOG3115|consensus

Probab=94.19  E-value=0.017  Score=45.58  Aligned_cols=29  Identities=55%  Similarity=0.909  Sum_probs=26.2

Q ss_pred             cCCccccchhhhcccccccChhhhhhccc
Q psy13087        141 ILNSQYENIACIRTNAMKYLPNYFRKAQA  169 (170)
Q Consensus       141 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  169 (170)
                      +..|.|.|+++++.++|+|+||+|.+||+
T Consensus       111 ~a~~~~~ni~vlr~namk~lpn~f~kgqL  139 (249)
T KOG3115|consen  111 SAEGQYPNISVLRTNAMKFLPNFFEKGQL  139 (249)
T ss_pred             ccccccccceeeeccchhhccchhhhccc
Confidence            44577999999999999999999999986

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=94.18  E-value=0.047  Score=48.20  Aligned_cols=40  Identities=18%  Similarity=0.350  Sum_probs=28.3

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEE---ECCHHHHHHHHHH
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGL---EIRVKVSDYVIDR   98 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~Gv---Dis~~~i~~a~~~   98 (170)
                      ..+||||||.|.|+.+|..+  +...+.+   |..+..++.|.++
T Consensus       119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR  161 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER  161 (506)
T ss_pred             EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc
Confidence            47899999999999999987  4322222   4445567776655

; GO: 0008168 methyltransferase activity

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=94.06  E-value=0.18  Score=41.46  Aligned_cols=63  Identities=14%  Similarity=0.203  Sum_probs=38.6

Q ss_pred             CeEEEEcCcc-chHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         57 VEFVDVGCGY-GGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        57 ~~vLDiGCG~-G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      .+|+=||||. -..++.+++.+ +++.|+++|+++++++.|++-++...    +....+.|+.+|+...
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----~L~~~m~f~~~d~~~~  186 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----GLSKRMSFITADVLDV  186 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-------HH-SSEEEEES-GGGG
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc----cccCCeEEEecchhcc
Confidence            5999999995 44566666554 56789999999999999988776210    1125689999887654

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=93.95  E-value=0.2  Score=39.84  Aligned_cols=80  Identities=11%  Similarity=0.033  Sum_probs=49.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccC---------
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN---------  126 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~---------  126 (170)
                      ..+.||.|+|-|+.+..+.... --.|-.||..++.++.|++.+...      ...-..+..+-.+++-|.         
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~------~~~v~~~~~~gLQ~f~P~~~~YDlIW~  128 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD------NPRVGEFYCVGLQDFTPEEGKYDLIWI  128 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG------GCCEEEEEES-GGG----TT-EEEEEE
T ss_pred             cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc------CCCcceEEecCHhhccCCCCcEeEEEe
Confidence            5799999999999998775443 237999999999999998765321      111244555555555442         


Q ss_pred             -----CCchhhhhhhHhhhcC
Q psy13087        127 -----YFRKAQVRRCFANCIL  142 (170)
Q Consensus       127 -----~f~~~~l~~i~~~~~~  142 (170)
                           ++.+..+-.++..|..
T Consensus       129 QW~lghLTD~dlv~fL~RCk~  149 (218)
T PF05891_consen  129 QWCLGHLTDEDLVAFLKRCKQ  149 (218)
T ss_dssp             ES-GGGS-HHHHHHHHHHHHH
T ss_pred             hHhhccCCHHHHHHHHHHHHH
Confidence                 3567777777776654

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG2651|consensus

Probab=93.94  E-value=0.11  Score=44.73  Aligned_cols=42  Identities=24%  Similarity=0.220  Sum_probs=36.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      -+.|+|+|.|.|.++..++-.+ +..|.|||-|....++|++-
T Consensus       154 i~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  154 IDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             CCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHHH
Confidence            4789999999999999999887 47999999997777776643

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=93.70  E-value=0.079  Score=39.27  Aligned_cols=53  Identities=15%  Similarity=0.275  Sum_probs=35.0

Q ss_pred             eEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhHhh
Q psy13087         81 LILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFAN  139 (170)
Q Consensus        81 ~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~  139 (170)
                      +|+|+||.+++++.+++++++.     +..++|++++.+-.. +..+.+++.++-+.+|
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~-----~~~~~v~li~~sHe~-l~~~i~~~~v~~~iFN   53 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEA-----GLEDRVTLILDSHEN-LDEYIPEGPVDAAIFN   53 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHT-----T-GSGEEEEES-GGG-GGGT--S--EEEEEEE
T ss_pred             CEEEEECHHHHHHHHHHHHHhc-----CCCCcEEEEECCHHH-HHhhCccCCcCEEEEE
Confidence            5899999999999999999886     333579999865554 5555555566665555

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=93.68  E-value=0.18  Score=40.73  Aligned_cols=64  Identities=13%  Similarity=0.057  Sum_probs=39.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY  127 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~  127 (170)
                      +++||=||=..- .++++|...+..+|+.+||++..++..++.+++.      +++ |+.++.|+...||+-
T Consensus        45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~------gl~-i~~~~~DlR~~LP~~  108 (243)
T PF01861_consen   45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEE------GLP-IEAVHYDLRDPLPEE  108 (243)
T ss_dssp             T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH------T---EEEE---TTS---TT
T ss_pred             CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc------CCc-eEEEEecccccCCHH
Confidence            688999984433 4555555566679999999999999999999887      665 999999999888753

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=93.52  E-value=0.13  Score=41.85  Aligned_cols=62  Identities=11%  Similarity=0.149  Sum_probs=41.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhC-----CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF-----PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~-----p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ...++|+|||.|.++.+++...     +...++.||....-. .+-.++...     .....++=++.|+.+.
T Consensus        19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~-----~~~~~~~R~riDI~dl   85 (259)
T PF05206_consen   19 DSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKD-----ESEPKFERLRIDIKDL   85 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhcc-----CCCCceEEEEEEeecc
Confidence            5689999999999999999988     456899999865432 233333221     1113456666777654

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=93.01  E-value=0.13  Score=41.23  Aligned_cols=45  Identities=18%  Similarity=0.261  Sum_probs=34.8

Q ss_pred             CeEEEEcCccchHHHHHhhhCC--------CCeEEEEECCHHHHHHHHHHHHH
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFP--------STLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p--------~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      ..|+|+|.|+|.++..+.....        ..+++-||+|+.+.+.-++++..
T Consensus        20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            6899999999999888776543        24899999999998877777644

; PDB: 4F3N_A 1ZKD_B.

>KOG2078|consensus

Probab=92.60  E-value=0.085  Score=45.84  Aligned_cols=64  Identities=11%  Similarity=0.150  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++..|.|+-||-|-+.+-+++.  ++.|++-|.++++++..+.++.....    .-.+|.+...|+..++
T Consensus       249 ~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv----~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  249 PGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKV----DPSAIEIFNMDAKDFL  312 (495)
T ss_pred             CcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhcccccc----chhheeeecccHHHHh
Confidence            3688999999999999999988  58999999999999999999865310    1135899999999988

>KOG1331|consensus

Probab=92.47  E-value=0.061  Score=44.31  Aligned_cols=39  Identities=28%  Similarity=0.373  Sum_probs=32.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +..++|+|||.|.++.-    .|.+.++|.|++...+..|++.
T Consensus        46 gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~   84 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS   84 (293)
T ss_pred             cceeeecccCCcccCcC----CCcceeeecchhhhhccccccC
Confidence            68999999999987654    3778899999999998877643

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=92.27  E-value=0.36  Score=39.51  Aligned_cols=58  Identities=16%  Similarity=0.222  Sum_probs=37.3

Q ss_pred             CeEEEEcCccc--hHHHHHhh-hCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC--eEEEEcchhh
Q psy13087         57 VEFVDVGCGYG--GLLVTLSP-MFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN--IACIRTNAMK  122 (170)
Q Consensus        57 ~~vLDiGCG~G--~~~~~la~-~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~i~~d~~~  122 (170)
                      ..+||||||-=  ...-+.|. ..|+++|+=||+++-.+..++.-+...        ++  ..++++|+.+
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~--------~~g~t~~v~aD~r~  132 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN--------PRGRTAYVQADLRD  132 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT---------TTSEEEEEE--TT-
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC--------CCccEEEEeCCCCC
Confidence            68999999954  34555555 469999999999999999988876432        45  7888888765

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=91.64  E-value=0.29  Score=39.46  Aligned_cols=39  Identities=15%  Similarity=0.236  Sum_probs=33.2

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDY   94 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~   94 (170)
                      ++..+||||+-||.|+-.+.... ...|+|||..-..+..
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~  117 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHW  117 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCH
Confidence            47899999999999999988774 4589999998876654

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=91.61  E-value=0.43  Score=38.94  Aligned_cols=41  Identities=17%  Similarity=0.213  Sum_probs=34.4

Q ss_pred             eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087         58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~   99 (170)
                      +++|+-||.|.+...+.... -..+.++|+++.+++..+.|.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~   42 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANF   42 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhC
Confidence            58999999999988887763 236899999999998887774

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=90.94  E-value=0.56  Score=34.13  Aligned_cols=38  Identities=18%  Similarity=0.147  Sum_probs=26.2

Q ss_pred             EEcCccc--hHHHHHh--hhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         61 DVGCGYG--GLLVTLS--PMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        61 DiGCG~G--~~~~~la--~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      |||+..|  .....+.  ...+...++++|-++..++..+++
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  6666553  456778999999999999999888

; PDB: 2PY6_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=90.80  E-value=0.7  Score=39.13  Aligned_cols=45  Identities=9%  Similarity=0.152  Sum_probs=37.7

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      .++.+||.+|||. |..++.+|+..+...++++|.+++..+.+++.
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            3568999999998 99999999987544699999999988887654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=90.61  E-value=0.51  Score=41.83  Aligned_cols=47  Identities=21%  Similarity=0.350  Sum_probs=40.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC----CCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP----STLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p----~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      ..+|.|-.||+|.++...++...    +..++|.|+++.....|+.|.--+
T Consensus       187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh  237 (489)
T COG0286         187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH  237 (489)
T ss_pred             CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh
Confidence            46999999999999999888763    367999999999999999987554

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=90.55  E-value=0.83  Score=39.07  Aligned_cols=64  Identities=14%  Similarity=0.045  Sum_probs=54.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+|+|-=||+|.=++..|...+...++.=|||+++++.+++|++..      ...+..+++.|+...+.
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N------~~~~~~v~n~DAN~lm~  116 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN------SGEDAEVINKDANALLH  116 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc------CcccceeecchHHHHHH
Confidence            46899999999999999999887779999999999999999999763      34567777788876653

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=89.23  E-value=0.98  Score=31.24  Aligned_cols=46  Identities=11%  Similarity=0.192  Sum_probs=32.8

Q ss_pred             CccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         64 CGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        64 CG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ||+|.++..+++..  .+..|+.+|.+++.++.+++.             .+.++.+|+.+
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------------~~~~i~gd~~~   51 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------------GVEVIYGDATD   51 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------------TSEEEES-TTS
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------------ccccccccchh
Confidence            78888888888764  234799999999987776543             26678888775

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG2920|consensus

Probab=89.22  E-value=0.28  Score=40.38  Aligned_cols=37  Identities=11%  Similarity=0.039  Sum_probs=31.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSD   93 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~   93 (170)
                      +++|||+|||.|.-.+.+.... ...+...|.+.+.++
T Consensus       117 ~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  117 GKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR  153 (282)
T ss_pred             CceeEecCCcccccchhhhhhc-cceeeeEecchhhee
Confidence            6899999999999999888764 367888899888873

>KOG1098|consensus

Probab=88.73  E-value=0.44  Score=43.36  Aligned_cols=36  Identities=31%  Similarity=0.484  Sum_probs=30.6

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCH
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRV   89 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~   89 (170)
                      ++...||||||..|.++.-++...| +..|+|||+-|
T Consensus        43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            3467899999999999999999887 45899999864

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=88.42  E-value=0.45  Score=38.50  Aligned_cols=47  Identities=17%  Similarity=0.197  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      ++-++||||.|.-.+--.+--+--+.+++|-||++..++.|+..+..
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~  124 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISA  124 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHc
Confidence            46789999999877654444433357999999999999999998865

>KOG1269|consensus

Probab=88.11  E-value=0.37  Score=41.22  Aligned_cols=48  Identities=17%  Similarity=0.162  Sum_probs=39.7

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      .++..++|+|||.|....+.+.. ..+.++|+|.++..+.++.......
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~  156 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKA  156 (364)
T ss_pred             cccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHH
Confidence            34568999999999999999865 4678999999999988887766543

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=86.96  E-value=2.4  Score=36.41  Aligned_cols=63  Identities=11%  Similarity=0.098  Sum_probs=48.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC--CeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYE--NIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~i~~d~~~~l  124 (170)
                      +-+|||-=+|+|.=++..+...++ ..|+.-|+|+++++..++|++..      +++  .+++.+.|+...+
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N------~~~~~~~~v~~~DAn~ll  115 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN------GLEDERIEVSNMDANVLL  115 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC------T-SGCCEEEEES-HHHHH
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc------cccCceEEEehhhHHHHh
Confidence            358999999999999999998543 48999999999999999998763      444  4888888988866

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG0024|consensus

Probab=86.59  E-value=2  Score=36.33  Aligned_cols=44  Identities=11%  Similarity=0.123  Sum_probs=38.4

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +.+.+||=+|+|. |-.+...|+.+...+|+.+|+++..++.|++
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            4579999999996 6677777888887899999999999999987

>KOG2912|consensus

Probab=86.49  E-value=0.65  Score=39.24  Aligned_cols=56  Identities=18%  Similarity=0.201  Sum_probs=40.9

Q ss_pred             EEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcch
Q psy13087         60 VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA  120 (170)
Q Consensus        60 LDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~  120 (170)
                      +|||+|.-.+-..+...--+..++++|+++..+..|++++.+.     +..+.+.+++.+.
T Consensus       107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn-----~lss~ikvV~~~~  162 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQN-----NLSSLIKVVKVEP  162 (419)
T ss_pred             eeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccc-----ccccceeeEEecc
Confidence            7999988776555544433578999999999999999999774     2334466665543

>KOG2198|consensus

Probab=86.34  E-value=2  Score=36.75  Aligned_cols=98  Identities=14%  Similarity=0.335  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCC----CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCC
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPS----TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYF  128 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~----~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f  128 (170)
                      ++++.+|||++...|.=++.+.+....    ..|++=|+++..+......+..+      ..+++.+...|+..+ ++.-
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l------~~~~~~v~~~~~~~~-p~~~  225 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL------PSPNLLVTNHDASLF-PNIY  225 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc------CCcceeeecccceec-cccc
Confidence            567899999999999988777665322    27999999999988888877554      335666666666542 2221


Q ss_pred             -------chhhhhhhHhhhcCCccccchhhhcccccccChhhhhh
Q psy13087        129 -------RKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFRK  166 (170)
Q Consensus       129 -------~~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  166 (170)
                             ....+|+|+.         .|.|..-+++.--++++++
T Consensus       226 ~~~~~~~~~~~fDrVLv---------DVPCS~Dgt~rk~~~i~~~  261 (375)
T KOG2198|consen  226 LKDGNDKEQLKFDRVLV---------DVPCSGDGTLRKNPNIWKE  261 (375)
T ss_pred             cccCchhhhhhcceeEE---------ecccCCCcccccCchHhhh
Confidence                   2223445443         3455555555555555544

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=85.84  E-value=2.2  Score=36.46  Aligned_cols=91  Identities=18%  Similarity=0.272  Sum_probs=56.3

Q ss_pred             hhhccCCccchhhhcccCCCCcCCCCCCCCCCCC--------CCcccc-CCCCCCCCCCCCCeEEEEcCccchHHHHHhh
Q psy13087          5 ERTLQLPQKRYYRQRAHSNPIADHSVEYPPSPND--------MDWSPL-YPELKDPTCEKKVEFVDVGCGYGGLLVTLSP   75 (170)
Q Consensus         5 ~~~~~~~~k~~~~~r~~~~p~~~~~~~~p~~~~~--------~~w~~~-~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~   75 (170)
                      +.-|-.|...||+.+...   .. .-++-|.|+.        ..|... ..+...   ...-.++|||.|.|.++.-+.+
T Consensus        25 ~~~L~~p~~GYYs~~~~~---G~-~GDFiTApels~lFGella~~~~~~wq~~g~---p~~~~lvEiGaG~G~l~~DiL~   97 (370)
T COG1565          25 ELALYDPEHGYYSSAVKI---GR-KGDFITAPELSQLFGELLAEQFLQLWQELGR---PAPLKLVEIGAGRGTLASDILR   97 (370)
T ss_pred             HHHHcCCCCcccccchhc---cc-cCCeeechhHHHHHHHHHHHHHHHHHHHhcC---CCCceEEEeCCCcChHHHHHHH
Confidence            345677999999883322   11 1145555543        123221 111110   0135799999999998877665


Q ss_pred             h----CC----CCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         76 M----FP----STLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        76 ~----~p----~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      .    +|    ..++.-||.|++...+=+++++..
T Consensus        98 ~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          98 TLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            4    33    468999999999988877776554

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=85.76  E-value=2.4  Score=34.24  Aligned_cols=46  Identities=15%  Similarity=0.184  Sum_probs=41.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      .+..|||-=+|+|..++.....  +..++|+|++++.++.+.+++...
T Consensus       222 ~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         222 PGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             CCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence            4789999999999999987766  567999999999999999998764

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=85.55  E-value=2.4  Score=35.72  Aligned_cols=43  Identities=16%  Similarity=0.261  Sum_probs=36.9

Q ss_pred             CCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +.+|+=+|||. |.+++.+|+..+...|+.+|++++-++.|++.
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~  212 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA  212 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence            34899999997 55668888888878999999999999999874

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=85.14  E-value=1.2  Score=35.44  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=17.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRV   89 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~   89 (170)
                      +..|.|+|||.+.++..+...   ..|.-.|+-.
T Consensus        73 ~~viaD~GCGdA~la~~~~~~---~~V~SfDLva  103 (219)
T PF05148_consen   73 SLVIADFGCGDAKLAKAVPNK---HKVHSFDLVA  103 (219)
T ss_dssp             TS-EEEES-TT-HHHHH--S------EEEEESS-
T ss_pred             CEEEEECCCchHHHHHhcccC---ceEEEeeccC
Confidence            468999999999998665422   3577777643

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=83.74  E-value=2.5  Score=34.28  Aligned_cols=41  Identities=17%  Similarity=0.255  Sum_probs=34.2

Q ss_pred             eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087         58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~   99 (170)
                      +++|+=||.|.+...+.... -..+.++|+++.+++.-+.|.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~   42 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANF   42 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHH
T ss_pred             cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhcc
Confidence            68999999999999988874 236999999999988877775

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG1596|consensus

Probab=83.62  E-value=0.85  Score=37.16  Aligned_cols=61  Identities=16%  Similarity=0.219  Sum_probs=43.7

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM  121 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~  121 (170)
                      ++++.+||=||.++|......+... |+..|++||.|+-.=......+++        -+||..|.-|+.
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--------RtNiiPIiEDAr  215 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--------RTNIIPIIEDAR  215 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--------cCCceeeeccCC
Confidence            5668999999999999999988864 677999999997543332222222        157776666665

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=83.45  E-value=1.7  Score=34.30  Aligned_cols=55  Identities=20%  Similarity=0.308  Sum_probs=38.4

Q ss_pred             CCeEEEEcCccchHHHHHhhh---C-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPM---F-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM  121 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~---~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~  121 (170)
                      ...|+|+|.-.|..++..|..   . ...+|+|+||+-.....+..+           .+.|.+++++..
T Consensus        70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p~i~f~egss~  128 (237)
T COG3510          70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VPDILFIEGSST  128 (237)
T ss_pred             CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CCCeEEEeCCCC
Confidence            478999999999988887763   2 236899999987665544332           245666666544

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=83.38  E-value=4  Score=34.65  Aligned_cols=45  Identities=11%  Similarity=0.126  Sum_probs=35.8

Q ss_pred             CCCCCeEEEEcCc-cchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         53 CEKKVEFVDVGCG-YGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        53 ~~~~~~vLDiGCG-~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      ..++.+|+=+|+| -|.+++.+|+... ++|+++|++++-.+.|++-
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l  209 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL  209 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh
Confidence            4457888877776 5568899998764 8999999999988887654

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=83.25  E-value=7.4  Score=32.47  Aligned_cols=64  Identities=19%  Similarity=0.182  Sum_probs=50.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccC
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN  126 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~  126 (170)
                      +..|+=+| -.--+++++|-..-..++..|||++..+...++-++++      +++||..+.-|....+|.
T Consensus       153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~------g~~~ie~~~~Dlr~plpe  216 (354)
T COG1568         153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL------GYNNIEAFVFDLRNPLPE  216 (354)
T ss_pred             CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh------CccchhheeehhcccChH
Confidence            67899999 44555666665543348999999999999999998887      788999988888877763

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=82.84  E-value=3  Score=34.25  Aligned_cols=41  Identities=17%  Similarity=0.116  Sum_probs=36.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +.+||==|||.|+++..+|..  +..+.|.|.|--|+-..+--
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fi   97 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFI   97 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHH
Confidence            579999999999999999998  67899999999997765543

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=81.80  E-value=5.3  Score=33.60  Aligned_cols=47  Identities=23%  Similarity=0.224  Sum_probs=39.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALR  103 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~  103 (170)
                      .+-+|+-||+|-..++.++++. | ..+.+||+++..+...+-+++..+
T Consensus        63 ~ghrivtigSGGcn~L~ylsr~-P-a~id~VDlN~ahiAln~lklaA~R  109 (414)
T COG5379          63 IGHRIVTIGSGGCNMLAYLSRA-P-ARIDVVDLNPAHIALNRLKLAAFR  109 (414)
T ss_pred             CCcEEEEecCCcchHHHHhhcC-C-ceeEEEeCCHHHHHHHHHHHHHHh
Confidence            3679999999988899888865 6 489999999999988887776653

>PRK07102 short chain dehydrogenase; Provisional

Probab=81.17  E-value=9.8  Score=29.49  Aligned_cols=59  Identities=7%  Similarity=0.066  Sum_probs=38.2

Q ss_pred             CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++=.|+ +|.++..+++.+  .+.+|++++.+++-.+...+.+...      ...++.++.+|..+
T Consensus         2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~   62 (243)
T PRK07102          2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR------GAVAVSTHELDILD   62 (243)
T ss_pred             cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh------cCCeEEEEecCCCC
Confidence            36777784 466666655544  2568999999987665544444332      23478888888764

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=81.12  E-value=1.2  Score=36.21  Aligned_cols=45  Identities=9%  Similarity=0.009  Sum_probs=31.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      +.++||||||.-.+-...|..+ -.+++..|..+.-++..++.++.
T Consensus        57 g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~  101 (256)
T PF01234_consen   57 GETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRK  101 (256)
T ss_dssp             EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCC
Confidence            6799999999866543333222 12699999999999988887654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=80.66  E-value=2.7  Score=31.61  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=24.3

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECC
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIR   88 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis   88 (170)
                      .-|||+|=|.|..--.|-+.+|+..++.+|.-
T Consensus        30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~   61 (160)
T PF12692_consen   30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRA   61 (160)
T ss_dssp             S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred             CceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence            46999999999999999999999999999974

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=80.07  E-value=1.3  Score=38.18  Aligned_cols=20  Identities=25%  Similarity=0.491  Sum_probs=16.0

Q ss_pred             CCeEEEEcCccchHHHHHhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSP   75 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~   75 (170)
                      ...|+|+|||+|..++.+..
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs   83 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIID   83 (386)
T ss_pred             ceeEEEecCCCCccHHHHHH
Confidence            45899999999988766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
2vdu_E	254	Structure Of Trm8-Trm82, The Yeast Trna M7g Methyla		3e-42
2vdv_E	246	Structure Of Trm8, M7g Methylation Enzyme Length =		1e-41
3ckk_A	235	Crystal Structure Of Human Methyltransferase-Like P		3e-37

>pdb|2VDU|E Chain E, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation Complex Length = 254

Iteration: 1
 Score =  167 bits (423), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 101/139 (72%), Gaps = 5/139 (3%)
Query: 4   EERTLQLPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPT---CEKKVEFV 60
           E + + LP+KRYYRQRAHSNP +DH +EYP SP DMDWS LYP  K+       KKV   
Sbjct: 3   EGQKIDLPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIA 62
Query: 61  DVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALR--SQNKGQYENIACIRT 118
           D+GCG+GGL++ LSP FP  LILG+EIRV+V++YV DR+ ALR  + +K  ++NI  +R 
Sbjct: 63  DIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRG 122
Query: 119 NAMKYLPNYFRKAQVRRCF 137
           NAMK+LPN+F K Q+ + F
Sbjct: 123 NAMKFLPNFFEKGQLSKMF 141

>pdb|2VDV|E Chain E, Structure Of Trm8, M7g Methylation Enzyme Length = 246

Iteration: 1
 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 98/133 (73%), Gaps = 5/133 (3%)
Query: 10  LPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPT---CEKKVEFVDVGCGY 66
           LP+KRYYRQRAHSNP +DH +EYP SP DMDWS LYP  K+       KKV   D+GCG+
Sbjct: 1   LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGF 60
Query: 67  GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALR--SQNKGQYENIACIRTNAMKYL 124
           GGL++ LSP FP  LILG+EIRV+V++YV DR+ ALR  + +K  ++NI  +R NAMK+L
Sbjct: 61  GGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFL 120
Query: 125 PNYFRKAQVRRCF 137
           PN+F K Q+ + F
Sbjct: 121 PNFFEKGQLSKMF 133

>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein 1 Length = 235

Iteration: 1
 Score =  150 bits (380), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/128 (54%), Positives = 88/128 (68%), Gaps = 16/128 (12%)
Query: 26  ADHSVEYPPSPNDMDWSPLYPEL----------------KDPTCEKKVEFVDVGCGYGGL 69
            DH++ YP  P +MDWS LYPE                 K+   + +VEF D+GCGYGGL
Sbjct: 1   GDHTLRYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGL 60
Query: 70  LVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFR 129
           LV LSP+FP TLILGLEIRVKVSDYV DR+ ALR+   G ++NIAC+R+NAMK+LPN+F 
Sbjct: 61  LVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY 120
Query: 130 KAQVRRCF 137
           K Q+ + F
Sbjct: 121 KGQLTKMF 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	2e-49
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	7e-40
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	8e-07
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	1e-06
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	1e-05
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	3e-04
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	4e-04
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	8e-04

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Length = 246

 Score =  158 bits (401), Expect = 2e-49
 Identities = 75/136 (55%), Positives = 97/136 (71%), Gaps = 5/136 (3%)

Query: 10  LPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCE---KKVEFVDVGCGY 66
           LP+KRYYRQRAHSNP +DH +EYP SP DMDWS LYP  K+       KKV   D+GCG+
Sbjct: 1   LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGF 60

Query: 67  GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQ--YENIACIRTNAMKYL 124
           GGL++ LSP FP  LILG+EIRV+V++YV DR+ ALR+    +  ++NI  +R NAMK+L
Sbjct: 61  GGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFL 120

Query: 125 PNYFRKAQVRRCFANC 140
           PN+F K Q+ + F   
Sbjct: 121 PNFFEKGQLSKMFFCF 136

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Length = 235

 Score =  134 bits (338), Expect = 7e-40
 Identities = 70/128 (54%), Positives = 87/128 (67%), Gaps = 16/128 (12%)

Query: 26  ADHSVEYPPSPNDMDWSPLYPELKDPTCE----------------KKVEFVDVGCGYGGL 69
            DH++ YP  P +MDWS LYPE   P  +                 +VEF D+GCGYGGL
Sbjct: 1   GDHTLRYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGL 60

Query: 70  LVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFR 129
           LV LSP+FP TLILGLEIRVKVSDYV DR+ ALR+   G ++NIAC+R+NAMK+LPN+F 
Sbjct: 61  LVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY 120

Query: 130 KAQVRRCF 137
           K Q+ + F
Sbjct: 121 KGQLTKMF 128

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* Length = 218

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 17/124 (13%)

Query: 18  QRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMF 77
           + A  N      VE+      +D+  L+        E  V  +++G G G  LV ++   
Sbjct: 6   EHALENYWPVMGVEFSEDM--LDFPALFGR------EAPV-TLEIGFGMGASLVAMAKDR 56

Query: 78  PSTLILGLEIRVKVSDYVIDRVA-ALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRC 136
           P    LG+E+           V   L S ++    N+  +  +A++ L        +R  
Sbjct: 57  PEQDFLGIEVHSP-------GVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMV 109

Query: 137 FANC 140
               
Sbjct: 110 QLFF 113

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 45.6 bits (107), Expect = 1e-06
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 60  VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
           +D+G G G  +  L+    +T  +G++   +    +  +   ++  +KG   N+  +   
Sbjct: 29  IDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKK--IIKKPSKGGLSNVVFVIAA 86

Query: 120 AMKYLPNYF 128
           A   LP   
Sbjct: 87  AES-LPFEL 94

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 59  FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT 118
            +DVG G G     ++   PS L++ L+      + +  +  A     KG   N+  +  
Sbjct: 31  VLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAK--AAAKPAKGGLPNLLYLWA 88

Query: 119 NAMKYLPNYFRKAQV 133
            A + LP      ++
Sbjct: 89  TAER-LPPLSGVGEL 102

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Length = 213

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 21/128 (16%)

Query: 10  LPQKRYYRQRAHSNPIADHSVEYPPSPNDM--DWSPLYPELKDPTCEKKVEFVDVGCGYG 67
           +  K ++        +A+++     +P D    W+ ++    +P        ++VG G G
Sbjct: 3   MRHKPWWDDF-----LAENADIAISNPADYKGKWNTVFGN-DNPIH------IEVGTGKG 50

Query: 68  GLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY 127
             +  ++   P    +G+E+   V       V A++     + +N+  +  +A   L + 
Sbjct: 51  QFISGMAKQNPDINYIGIELFKSVI------VTAVQKVKDSEAQNVKLLNIDA-DTLTDV 103

Query: 128 FRKAQVRR 135
           F   +V+R
Sbjct: 104 FEPGEVKR 111

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Length = 214

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 60  VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
           V+VG G G  +  ++   P    +G++I+  V         AL    +    NI  +  +
Sbjct: 46  VEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVL------SYALDKVLEVGVPNIKLLWVD 99

Query: 120 AMKYLPNYFRKAQVRR 135
               L +YF   ++ R
Sbjct: 100 G-SDLTDYFEDGEIDR 114

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 37.6 bits (87), Expect = 8e-04
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 10/71 (14%)

Query: 61  DVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA 120
           + GCG G   V L+   P   I  ++I    S   +++ A   ++  G  +N+  ++ N 
Sbjct: 43  EAGCGIGAQTVILAKNNPDAEITSIDI----SPESLEK-ARENTEKNG-IKNVKFLQANI 96

Query: 121 MKYLP---NYF 128
              LP   + F
Sbjct: 97  FS-LPFEDSSF 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.87
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.8
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.67
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.65
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.56
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.45
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.38
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.38
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.36
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.34
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.34
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.31
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.31
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.31
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.3
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.29
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.28
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.28
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.27
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.27
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.27
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.27
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.26
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.26
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.25
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.24
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.24
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.23
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.22
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.22
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.22
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.22
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.21
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.21
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.21
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.21
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.2
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.2
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.2
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.2
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.2
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.19
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.19
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.18
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.18
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.18
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.18
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.18
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.17
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.17
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.17
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.17
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.16
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.16
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.16
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.16
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.15
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.15
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.15
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.15
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.15
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.14
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.14
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.14
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.14
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.14
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.13
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.13
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.13
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.13
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.12
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.12
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.12
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.11
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.11
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.11
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.11
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.11
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.1
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.1
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.1
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.1
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.09
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.08
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.08
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.08
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.08
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.08
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.07
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.07
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.07
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.06
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.06
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.06
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.06
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.05
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.05
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.05
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.05
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.05
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.04
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.04
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.04
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.04
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.04
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.03
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.03
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.03
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.03
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.03
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.03
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.03
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.03
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.03
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.03
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.03
2o07_A	304	Spermidine synthase; structural genomics, structur	99.02
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.02
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.02
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.02
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.01
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.01
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.01
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.01
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.01
3ocj_A	305	Putative exported protein; structural genomics, PS	99.0
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.0
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.0
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.0
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.0
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.0
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.0
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.0
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.0
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.99
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.99
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.99
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.99
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.99
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.98
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.98
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.98
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.98
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.98
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.98
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.97
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.97
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.97
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.97
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.97
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.97
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.96
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.96
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.96
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.95
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.95
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.94
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.94
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.94
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.93
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.93
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.93
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.93
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.93
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.93
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.93
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.92
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.92
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.92
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.92
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.92
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.92
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.91
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.91
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.91
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.91
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.91
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.91
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.9
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.9
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.9
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.89
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.89
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.89
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.88
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.87
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.87
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.87
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.87
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.87
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.87
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.87
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.87
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.86
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.86
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.86
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.86
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.85
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.85
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.85
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.84
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.84
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.84
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.84
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.84
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.83
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.83
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.83
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.82
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.82
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.82
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.81
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.8
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.79
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.79
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.79
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.79
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.78
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.77
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.76
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.76
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.76
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.75
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.74
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.74
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.73
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.73
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.71
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.71
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.7
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.7
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.69
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.69
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.68
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.68
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.67
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.66
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.65
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.63
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.63
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.63
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.63
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.62
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.6
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.58
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.58
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.56
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.56
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.54
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.54
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.53
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.53
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.52
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.5
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.47
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.44
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.43
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.43
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.39
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.38
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.37
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.36
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.35
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.34
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.34
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.31
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.3
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.18
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.15
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.02
3lkd_A	542	Type I restriction-modification system methyltrans	97.99
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.95
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.95
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.84
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.81
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.8
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.79
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.79
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.72
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.69
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.6
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.59
3khk_A	544	Type I restriction-modification system methylation	97.59
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.58
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.57
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.37
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.36
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.18
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.1
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.02
3ufb_A	530	Type I restriction-modification system methyltran	96.9
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.9
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.6
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.6
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.38
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.32
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.3
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	96.15
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.05
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.05
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	95.56
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	94.54
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	94.44
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	94.39
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	93.95
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	93.27
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	92.89
2oo3_A	283	Protein involved in catabolism of external DNA; st	92.36
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	92.26
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	91.73
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	91.56
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	91.39
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	91.31
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	91.28
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	89.95
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	89.58
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	88.01
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	87.75
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	87.56
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	87.31
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	87.28
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	87.04
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	86.91
3me5_A	482	Cytosine-specific methyltransferase; structural ge	86.59
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	86.47
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	86.38
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	86.32
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	86.17
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	85.77
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	85.67
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	85.65
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	85.48
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	85.42
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	85.32
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	85.32
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	85.01
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	84.73
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	84.15
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	83.25
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	83.22
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	83.2
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	83.2
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	82.93
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	82.81
4g65_A	461	TRK system potassium uptake protein TRKA; structur	82.74
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	82.63
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	82.62
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	82.31
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	82.13
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	82.06
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	81.41
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	81.36
3gms_A	340	Putative NADPH:quinone reductase; structural genom	80.96
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	80.39
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	80.14
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	80.04
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	80.03

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.87  E-value=2.9e-22  Score=158.57  Aligned_cols=134  Identities=56%  Similarity=1.023  Sum_probs=96.8

Q ss_pred             CCccchhhhcccCCCCcCCCCCCCCCCCCCCccccCCCCCC---CCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEE
Q psy13087         10 LPQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKD---PTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLE   86 (170)
Q Consensus        10 ~~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~~~~~~~---~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvD   86 (170)
                      .|+|+|||+|+|.||++...+.||..+...+|...|+....   ..+.++.+|||||||+|.+++.+|..+|+.+|+|||
T Consensus         1 ~p~~~~~r~r~~~np~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD   80 (246)
T 2vdv_E            1 LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGME   80 (246)
T ss_dssp             -------------CTTGGGSCSSCCCCCCCCGGGTCGGGBC----CBSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEE
T ss_pred             CCcccceeccCCcchhhhhcCcccCCCCCCCHHHHhCcccccccccCCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEE
Confidence            48899999999999999988899998888899988876210   011236899999999999999999999888999999


Q ss_pred             CCHHHHHHHHHHHHHHhhcCCC--CCCCeEEEEcchhhhccCCCchhhhhhhHhhhcCC
Q psy13087         87 IRVKVSDYVIDRVAALRSQNKG--QYENIACIRTNAMKYLPNYFRKAQVRRCFANCILN  143 (170)
Q Consensus        87 is~~~i~~a~~~~~~~~~~~~~--~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~~~~~  143 (170)
                      +|+.+++.|+++++..+.....  +++|+.++.+|+.+.++.+|++++++.++++++.|
T Consensus        81 ~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~p~p  139 (246)
T 2vdv_E           81 IRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDP  139 (246)
T ss_dssp             SCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEEEEEEESCCC
T ss_pred             cCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccCEEEEECCCc
Confidence            9999999999998764322111  45799999999998777777777888887766554

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.80  E-value=8.4e-20  Score=144.38  Aligned_cols=117  Identities=60%  Similarity=1.072  Sum_probs=87.5

Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCC----------------CCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHH
Q psy13087         27 DHSVEYPPSPNDMDWSPLYPELKDP----------------TCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK   90 (170)
Q Consensus        27 ~~~~~~p~~~~~~~w~~~~~~~~~~----------------~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~   90 (170)
                      ++.+.||.+|+.++|...|+.....                ...++.+|||||||+|.++..+|..+|+.+|+|||+|+.
T Consensus         2 ~~~~~~p~~p~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~   81 (235)
T 3ckk_A            2 DHTLRYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVK   81 (235)
T ss_dssp             -----CCSSGGGCCCTTTCTTC----------------------CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHH
T ss_pred             CCCCCCCCCcccCCchhhCccccccccccccccccccccccccCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHH
Confidence            4568999999999999988865210                123457899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhhhHhhhcCC
Q psy13087         91 VSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILN  143 (170)
Q Consensus        91 ~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~~~~~  143 (170)
                      |++.|+++++.++........||+++++|+...++++|++++++.|+++++.|
T Consensus        82 ~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp  134 (235)
T 3ckk_A           82 VSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDP  134 (235)
T ss_dssp             HHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC-
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCc
Confidence            99999998876432222356799999999987666667777777777665544

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.67  E-value=4.6e-17  Score=127.20  Aligned_cols=92  Identities=16%  Similarity=0.226  Sum_probs=79.5

Q ss_pred             CCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEc
Q psy13087         39 MDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT  118 (170)
Q Consensus        39 ~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~  118 (170)
                      .+|...|+..       +++|||||||+|.++..+|..+|+..|+|||+|+++++.|+++++..      +++|++++.+
T Consensus        25 ~d~~~~f~~~-------~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~------~l~nv~~~~~   91 (218)
T 3dxy_A           25 LDFPALFGRE-------APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEE------GLSNLRVMCH   91 (218)
T ss_dssp             CCHHHHHSSC-------CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHT------TCSSEEEECS
T ss_pred             CCHHHHcCCC-------CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHh------CCCcEEEEEC
Confidence            6788888763       58999999999999999999999999999999999999999998775      6789999999


Q ss_pred             chhhhccCCCchhhhhhhHhhhcCC
Q psy13087        119 NAMKYLPNYFRKAQVRRCFANCILN  143 (170)
Q Consensus       119 d~~~~l~~~f~~~~l~~i~~~~~~~  143 (170)
                      |+.+.++..+++++++.|+.+++.|
T Consensus        92 Da~~~l~~~~~~~~~d~v~~~~~~p  116 (218)
T 3dxy_A           92 DAVEVLHKMIPDNSLRMVQLFFPDP  116 (218)
T ss_dssp             CHHHHHHHHSCTTCEEEEEEESCCC
T ss_pred             CHHHHHHHHcCCCChheEEEeCCCC
Confidence            9998776666777788777765554

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.65  E-value=9.6e-17  Score=124.50  Aligned_cols=90  Identities=19%  Similarity=0.358  Sum_probs=72.8

Q ss_pred             CCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEc
Q psy13087         39 MDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT  118 (170)
Q Consensus        39 ~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~  118 (170)
                      .+|...|+..       +++|||||||+|.++..+|+.+|+.+|+|||+|+.+++.|+++++..      +++||+++++
T Consensus        29 ~~~~~~f~~~-------~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~------~~~nv~~~~~   95 (213)
T 2fca_A           29 GKWNTVFGND-------NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS------EAQNVKLLNI   95 (213)
T ss_dssp             TCHHHHHTSC-------CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS------CCSSEEEECC
T ss_pred             CCHHHHcCCC-------CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHc------CCCCEEEEeC
Confidence            4787777642       57999999999999999999999999999999999999999998775      6689999999


Q ss_pred             chhhhccCCCchhhhhhhHhhhcC
Q psy13087        119 NAMKYLPNYFRKAQVRRCFANCIL  142 (170)
Q Consensus       119 d~~~~l~~~f~~~~l~~i~~~~~~  142 (170)
                      |+.. ++.+|++++++.++.+++.
T Consensus        96 d~~~-l~~~~~~~~~d~v~~~~~~  118 (213)
T 2fca_A           96 DADT-LTDVFEPGEVKRVYLNFSD  118 (213)
T ss_dssp             CGGG-HHHHCCTTSCCEEEEESCC
T ss_pred             CHHH-HHhhcCcCCcCEEEEECCC
Confidence            9986 3334555556666554443

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.56  E-value=4.5e-15  Score=114.46  Aligned_cols=91  Identities=23%  Similarity=0.461  Sum_probs=73.6

Q ss_pred             CCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEc
Q psy13087         39 MDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT  118 (170)
Q Consensus        39 ~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~  118 (170)
                      .+|...|+..       +.+|||||||+|.++..+|..+|+.+++|||+|+.+++.|++++...      +++|+.++++
T Consensus        32 ~~~~~~f~~~-------~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~------~~~~v~~~~~   98 (214)
T 1yzh_A           32 AKWRDLFGND-------NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV------GVPNIKLLWV   98 (214)
T ss_dssp             TTHHHHHTSC-------CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH------CCSSEEEEEC
T ss_pred             cCHHHHcCCC-------CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc------CCCCEEEEeC
Confidence            4777666532       57999999999999999999999899999999999999999999876      5689999999


Q ss_pred             chhhhccCCCchhhhhhhHhhhcCC
Q psy13087        119 NAMKYLPNYFRKAQVRRCFANCILN  143 (170)
Q Consensus       119 d~~~~l~~~f~~~~l~~i~~~~~~~  143 (170)
                      |+.. ++..++++++|.|+.+++.|
T Consensus        99 d~~~-~~~~~~~~~~D~i~~~~~~~  122 (214)
T 1yzh_A           99 DGSD-LTDYFEDGEIDRLYLNFSDP  122 (214)
T ss_dssp             CSSC-GGGTSCTTCCSEEEEESCCC
T ss_pred             CHHH-HHhhcCCCCCCEEEEECCCC
Confidence            9986 44445555666666655443

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.45  E-value=2.6e-13  Score=108.68  Aligned_cols=88  Identities=8%  Similarity=0.180  Sum_probs=67.3

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc-c-----
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL-P-----  125 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l-~-----  125 (170)
                      +++.+|||||||+|.++..+++.+  ++++|+|||+|++|++.|+++++..     +...+|+++++|+.+.- +     
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~-----~~~~~v~~~~~D~~~~~~~~~d~v  143 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-----KAPTPVDVIEGDIRDIAIENASMV  143 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS-----CCSSCEEEEESCTTTCCCCSEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh-----ccCceEEEeecccccccccccccc
Confidence            457899999999999999999875  5679999999999999999998765     33458999999987632 1     


Q ss_pred             ------CCCchh----hhhhhHhhhcCCcccc
Q psy13087        126 ------NYFRKA----QVRRCFANCILNSQYE  147 (170)
Q Consensus       126 ------~~f~~~----~l~~i~~~~~~~g~~~  147 (170)
                            +++++.    .+.+++. .++|||..
T Consensus       144 ~~~~~l~~~~~~~~~~~l~~i~~-~LkpGG~l  174 (261)
T 4gek_A          144 VLNFTLQFLEPSERQALLDKIYQ-GLNPGGAL  174 (261)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHH-HEEEEEEE
T ss_pred             eeeeeeeecCchhHhHHHHHHHH-HcCCCcEE
Confidence                  123333    3556655 57788753

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.38  E-value=5.3e-13  Score=104.25  Aligned_cols=105  Identities=6%  Similarity=0.056  Sum_probs=76.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC--CeEEEEcchhhhccCCCchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYE--NIACIRTNAMKYLPNYFRKAQ  132 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~i~~d~~~~l~~~f~~~~  132 (170)
                      +++|||||||+|..++.+|+..+ +.+|+++|+++++++.|+++++..      ++.  +|+++.+|+.+.++.+ +++.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------g~~~~~i~~~~gda~~~l~~~-~~~~  129 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA------GYSPSRVRFLLSRPLDVMSRL-ANDS  129 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT------TCCGGGEEEECSCHHHHGGGS-CTTC
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCcCcEEEEEcCHHHHHHHh-cCCC
Confidence            35999999999999999999875 789999999999999999999875      444  8999999998876532 2455


Q ss_pred             hhhhHhhhcCCccccc-----hhhhcccccccChhhhhhcc
Q psy13087        133 VRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKAQ  168 (170)
Q Consensus       133 l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~  168 (170)
                      +|.||+.... ..+.+     ..+++.++....+|++..|.
T Consensus       130 fD~V~~d~~~-~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~  169 (221)
T 3dr5_A          130 YQLVFGQVSP-MDLKALVDAAWPLLRRGGALVLADALLDGT  169 (221)
T ss_dssp             EEEEEECCCT-TTHHHHHHHHHHHEEEEEEEEETTTTGGGT
T ss_pred             cCeEEEcCcH-HHHHHHHHHHHHHcCCCcEEEEeCCCCCCc
Confidence            6666653222 22211     24555566666666655544

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.38  E-value=5e-13  Score=104.52  Aligned_cols=75  Identities=12%  Similarity=0.214  Sum_probs=61.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhcc-CCCchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLP-NYFRKAQV  133 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~-~~f~~~~l  133 (170)
                      +.+|||||||+|.++..+|...|+.+|+|+|+++++++.|+++++..      ++ ++|.++.+|+.+.++ ..  ++.+
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~~~~~--~~~f  143 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATY------HFENQVRIIEGNALEQFENVN--DKVY  143 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHT------TCTTTEEEEESCGGGCHHHHT--TSCE
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEECCHHHHHHhhc--cCCc
Confidence            57999999999999999999878889999999999999999999875      44 489999999987654 21  2344


Q ss_pred             hhhHh
Q psy13087        134 RRCFA  138 (170)
Q Consensus       134 ~~i~~  138 (170)
                      |.|+.
T Consensus       144 D~V~~  148 (232)
T 3ntv_A          144 DMIFI  148 (232)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            54444

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.36  E-value=1.7e-12  Score=103.06  Aligned_cols=64  Identities=16%  Similarity=0.165  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||||||+|..++.+|..+|+.+|+|||+|+++++.|+++++.+      ++.||+++++|+.+..
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~l~~v~~~~~d~~~~~  143 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVL------GLKGARALWGRAEVLA  143 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH------TCSSEEEEECCHHHHT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh------CCCceEEEECcHHHhh
Confidence            367999999999999999999999999999999999999999999887      6778999999998764

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.34  E-value=2e-12  Score=96.82  Aligned_cols=60  Identities=18%  Similarity=0.215  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+|+.  ..+|+|+|+|++|++.|+++++..      +++|+++++.++..
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~------~~~~v~~~~~~~~~   81 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDL------GIENTELILDGHEN   81 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHH------TCCCEEEEESCGGG
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCcHHH
Confidence            3689999999999999999988  578999999999999999999876      55889999877665

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.34  E-value=1.2e-12  Score=103.56  Aligned_cols=65  Identities=12%  Similarity=0.160  Sum_probs=57.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhccC
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLPN  126 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~~  126 (170)
                      +.+|||||||+|..+..+|...| +.+|+|+|+++++++.|+++++..      ++ ++|+++.+|+.+.++.
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------g~~~~v~~~~~d~~~~l~~  130 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA------GVDQRVTLREGPALQSLES  130 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT------TCTTTEEEEESCHHHHHHT
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEEcCHHHHHHh
Confidence            57999999999999999999987 789999999999999999999875      44 4899999999886653

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.31  E-value=4.3e-12  Score=99.45  Aligned_cols=63  Identities=22%  Similarity=0.210  Sum_probs=57.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.+++.+|...++.+|+|||+|+++++.|+++++..      +++||+++++|+.+..
T Consensus        71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~  133 (240)
T 1xdz_A           71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL------QLENTTFCHDRAETFG  133 (240)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH------TCSSEEEEESCHHHHT
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCEEEEeccHHHhc
Confidence            57999999999999999998888889999999999999999999876      5678999999987653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.31  E-value=8.8e-12  Score=95.84  Aligned_cols=63  Identities=14%  Similarity=0.200  Sum_probs=55.8

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYL  124 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l  124 (170)
                      .++.+|||||||+|.++..+|+.  +.+|+|+|+++++++.|+++++..      +.+ |+.++.+|+.+.+
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~------g~~~~v~~~~~d~~~~~  117 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTY------GLSPRMRAVQGTAPAAL  117 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEESCTTGGG
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc------CCCCCEEEEeCchhhhc
Confidence            34689999999999999999988  578999999999999999998875      556 8999999998754

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.31  E-value=1.1e-11  Score=94.31  Aligned_cols=65  Identities=18%  Similarity=0.306  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ++.+|||||||+|.++..+++..|..+|+|+|+|+++++.|+++++..      +.+++.++.+|+.+.++
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~  104 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF------VARNVTLVEAFAPEGLD  104 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH------TCTTEEEEECCTTTTCT
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEeCChhhhhh
Confidence            468999999999999999999988889999999999999999999876      56889999999876543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.30  E-value=4.2e-12  Score=95.75  Aligned_cols=62  Identities=15%  Similarity=0.150  Sum_probs=54.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++++..      ++++++++++|+.+.+
T Consensus        45 ~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~  106 (189)
T 3p9n_A           45 GLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEAL------GLSGATLRRGAVAAVV  106 (189)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHH------TCSCEEEEESCHHHHH
T ss_pred             CCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHc------CCCceEEEEccHHHHH
Confidence            579999999999999988875 4558999999999999999999886      5578999999988763

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.29  E-value=5.6e-13  Score=104.34  Aligned_cols=62  Identities=18%  Similarity=0.220  Sum_probs=52.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECC-HHHHHHH---HHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIR-VKVSDYV---IDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis-~~~i~~a---~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..+|+..++..|+|||+| +.|++.|   +++++..      +.+|+.++.+|+...
T Consensus        25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~------~~~~v~~~~~d~~~l   90 (225)
T 3p2e_A           25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG------GLSNVVFVIAAAESL   90 (225)
T ss_dssp             SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT------CCSSEEEECCBTTBC
T ss_pred             CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc------CCCCeEEEEcCHHHh
Confidence            579999999999999999988888899999999 7777666   6655443      667999999998764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.28  E-value=2e-12  Score=99.69  Aligned_cols=63  Identities=13%  Similarity=0.146  Sum_probs=55.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..++...| +.+|+|+|+++++++.|+++++..      +.. ++.++.+|+.+.+
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~  129 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA------GLSDKIGLRLSPAKDTL  129 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEESCHHHHH
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC------CCCCceEEEeCCHHHHH
Confidence            57999999999999999999887 789999999999999999999875      444 5999999997764

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.28  E-value=8.6e-12  Score=92.31  Aligned_cols=63  Identities=17%  Similarity=0.288  Sum_probs=54.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l~  125 (170)
                      +.+|||||||+|.++..++..+|..+|+|+|+++.+++.|+++++..      +.+ ++ ++.+|+.+.++
T Consensus        26 ~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~-~~~~d~~~~~~   89 (178)
T 3hm2_A           26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL------GVSDRI-AVQQGAPRAFD   89 (178)
T ss_dssp             TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTT------TCTTSE-EEECCTTGGGG
T ss_pred             CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHh------CCCCCE-EEecchHhhhh
Confidence            57999999999999999999988889999999999999999998765      445 88 88888865443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.27  E-value=2.4e-12  Score=102.93  Aligned_cols=74  Identities=18%  Similarity=0.276  Sum_probs=62.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      +.+|||||||+|.++..++...|+.+|+|+|+|+.+++.|+++++..      +.+++.++++|+...++    .+.+|.
T Consensus       110 ~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~------~~~~v~~~~~d~~~~~~----~~~fD~  179 (276)
T 2b3t_A          110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL------AIKNIHILQSDWFSALA----GQQFAM  179 (276)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH------TCCSEEEECCSTTGGGT----TCCEEE
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEEcchhhhcc----cCCccE
Confidence            57999999999999999999988889999999999999999999876      56689999999876542    345666


Q ss_pred             hHhh
Q psy13087        136 CFAN  139 (170)
Q Consensus       136 i~~~  139 (170)
                      |+.+
T Consensus       180 Iv~n  183 (276)
T 2b3t_A          180 IVSN  183 (276)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            6554

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.27  E-value=3.9e-11  Score=97.98  Aligned_cols=63  Identities=14%  Similarity=0.092  Sum_probs=53.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..++...++++|+|||+|++|++.|++++++.      ++++|+++++|+.+.
T Consensus       122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~------gl~~v~~v~gDa~~l  184 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL------GVDGVNVITGDETVI  184 (298)
T ss_dssp             TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH------TCCSEEEEESCGGGG
T ss_pred             CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc------CCCCeEEEECchhhC
Confidence            478999999999987755444556789999999999999999999886      458999999999874

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.27  E-value=6.3e-12  Score=98.96  Aligned_cols=78  Identities=15%  Similarity=0.206  Sum_probs=61.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhccCCCch---h
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYLPNYFRK---A  131 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l~~~f~~---~  131 (170)
                      +.+|||||||+|.++..++...++.+|+|+|+|+.|++.|+++++..      ++. +++++++|+.+.+...++.   +
T Consensus        66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~~~~~~~~~~~  139 (254)
T 2h00_A           66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN------NLSDLIKVVKVPQKTLLMDALKEESEI  139 (254)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred             CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHc------CCCccEEEEEcchhhhhhhhhhcccCC
Confidence            57999999999999999999877789999999999999999998775      444 4999999976532222321   4


Q ss_pred             hhhhhHhh
Q psy13087        132 QVRRCFAN  139 (170)
Q Consensus       132 ~l~~i~~~  139 (170)
                      .+|.|+.+
T Consensus       140 ~fD~i~~n  147 (254)
T 2h00_A          140 IYDFCMCN  147 (254)
T ss_dssp             CBSEEEEC
T ss_pred             cccEEEEC
Confidence            56666654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.27  E-value=2.8e-12  Score=98.86  Aligned_cols=63  Identities=14%  Similarity=0.132  Sum_probs=56.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..+|+..| +.+|+|+|+++.+++.|+++++..      ++. +++++.+|+.+.+
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~  123 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA------NLNDRVEVRTGLALDSL  123 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEESCHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEEcCHHHHH
Confidence            57999999999999999999987 679999999999999999999875      444 5999999997654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.26  E-value=1.6e-11  Score=96.55  Aligned_cols=65  Identities=15%  Similarity=0.089  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYLP  125 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l~  125 (170)
                      ++.+|+|||||+|.+++.+|+..|...|+|+|+++.+++.|++|++..      ++. +|.++.+|..+.++
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~------gl~~~i~~~~~d~l~~l~   80 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH------GLKEKIQVRLANGLAAFE   80 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT------TCTTTEEEEECSGGGGCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEEECchhhhcc
Confidence            367999999999999999999988789999999999999999999885      454 69999999976654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.26  E-value=6.1e-12  Score=95.11  Aligned_cols=63  Identities=17%  Similarity=0.347  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~  123 (170)
                      ++.+|||+|||+|.++..+++.. |..+|+|+|+++.+++.|+++++..      ++ +++.++++|+...
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~   86 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL------NLIDRVTLIKDGHQNM   86 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT------TCGGGEEEECSCGGGG
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCCeEEEECCHHHH
Confidence            35799999999999999999985 5669999999999999999998775      44 6899999998764

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.25  E-value=4e-12  Score=100.70  Aligned_cols=64  Identities=16%  Similarity=0.176  Sum_probs=56.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~  125 (170)
                      +.+|||||||+|..++.+|+..| +.+|+++|+++++++.|+++++..      ++ ++|+++.+|+.+.++
T Consensus        80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------g~~~~i~~~~gda~~~l~  145 (247)
T 1sui_A           80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA------GVDHKIDFREGPALPVLD  145 (247)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT------TCGGGEEEEESCHHHHHH
T ss_pred             cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCCeEEEECCHHHHHH
Confidence            57999999999999999999987 679999999999999999998875      34 579999999987643

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.24  E-value=1.4e-11  Score=95.23  Aligned_cols=64  Identities=11%  Similarity=0.219  Sum_probs=56.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~  125 (170)
                      +.+|||||||+|..++.+|+..+ +.+|+|||+++.+++.|+++++..      ++ ++|+++.+|+.+.++
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~l~  124 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA------GLQDKVTILNGASQDLIP  124 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH------TCGGGEEEEESCHHHHGG
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHc------CCCCceEEEECCHHHHHH
Confidence            57999999999999999999764 779999999999999999999876      44 469999999977654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.24  E-value=1.3e-11  Score=99.07  Aligned_cols=63  Identities=16%  Similarity=0.232  Sum_probs=57.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||+|||+|.+++.+|+..+..+|+|+|+++.+++.|+++++..      +++|+.++.+|+.+.
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n------~l~~~~~~~~d~~~~  181 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLN------KLNNVIPILADNRDV  181 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHT------TCSSEEEEESCGGGC
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCEEEEECChHHc
Confidence            468999999999999999999987779999999999999999999774      678999999999875

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.23  E-value=2.1e-11  Score=90.12  Aligned_cols=62  Identities=23%  Similarity=0.385  Sum_probs=55.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +.+|||+|||+|.++..++.  +..+++|+|+++.+++.|+++++..      +++++.++.+|+.+.++
T Consensus        36 ~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~   97 (183)
T 2yxd_A           36 DDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKF------NIKNCQIIKGRAEDVLD   97 (183)
T ss_dssp             TCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHT------TCCSEEEEESCHHHHGG
T ss_pred             CCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHc------CCCcEEEEECCcccccc
Confidence            57999999999999999998  5779999999999999999998875      56789999999887543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.22  E-value=1.1e-11  Score=94.94  Aligned_cols=63  Identities=24%  Similarity=0.314  Sum_probs=54.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +.+|||+|||+|.+++.++.... .+|+|+|+|+.+++.|+++++..      ++++++++++|+.+.++
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~------~~~~v~~~~~D~~~~~~  117 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATL------KAGNARVVNSNAMSFLA  117 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT------TCCSEEEECSCHHHHHS
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHHHh
Confidence            57999999999999998777643 48999999999999999998875      55789999999887653

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.22  E-value=3.2e-11  Score=95.99  Aligned_cols=65  Identities=12%  Similarity=0.078  Sum_probs=57.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYLP  125 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l~  125 (170)
                      ++.+|||||||+|.+++.+|+..|...|+|+|+++.+++.|++|++..      ++. +|.+..+|..+.+.
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~------gl~~~I~v~~gD~l~~~~   86 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS------GLTEQIDVRKGNGLAVIE   86 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT------TCTTTEEEEECSGGGGCC
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEEecchhhccC
Confidence            367999999999999999999987778999999999999999999875      554 59999999887653

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.22  E-value=3.5e-11  Score=94.97  Aligned_cols=65  Identities=17%  Similarity=0.132  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLP  125 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~  125 (170)
                      ++.+|+|||||+|.+++.+|+..|...|+|+|+++.+++.|++|++..      ++ ++|.++.+|..+.+.
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~------gl~~~I~~~~gD~l~~~~   86 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH------GLTSKIDVRLANGLSAFE   86 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHT------TCTTTEEEEECSGGGGCC
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEECchhhccc
Confidence            368999999999999999999987778999999999999999999885      44 469999999987653

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.22  E-value=8.3e-13  Score=104.37  Aligned_cols=65  Identities=14%  Similarity=0.071  Sum_probs=56.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +.+|||||||+|..++.+|+..| +.+|+|||+++++++.|+++++..     +..++|+++.+|+.+.++
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----g~~~~i~~~~gda~~~l~  126 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA-----KQEHKIKLRLGPALDTLH  126 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT-----TCTTTEEEEESCHHHHHH
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCCcEEEEEcCHHHHHH
Confidence            57999999999999999999876 779999999999999999999875     223589999999987654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.21  E-value=3.1e-11  Score=97.57  Aligned_cols=100  Identities=9%  Similarity=0.109  Sum_probs=70.7

Q ss_pred             CccchhhhcccCCCCcCCCCCCCCCCCCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHH
Q psy13087         11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK   90 (170)
Q Consensus        11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~   90 (170)
                      +...||..+...+|..-  +..|.+....+|.......     .++.+|||||||+|.+++.++.. |+.+|+|+|+|++
T Consensus        86 g~~~f~~~~~~v~~~~l--ipr~~te~lv~~~l~~~~~-----~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~  157 (284)
T 1nv8_A           86 GEKEFMGLSFLVEEGVF--VPRPETEELVELALELIRK-----YGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSK  157 (284)
T ss_dssp             TEEEETTEEEECCTTSC--CCCTTHHHHHHHHHHHHHH-----HTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHH
T ss_pred             eeeEECCeEEEeCCCce--ecChhHHHHHHHHHHHhcc-----cCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHH
Confidence            45567777776665431  2333322222232211111     12468999999999999999999 8899999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCC-eEEEEcchhhhc
Q psy13087         91 VSDYVIDRVAALRSQNKGQYEN-IACIRTNAMKYL  124 (170)
Q Consensus        91 ~i~~a~~~~~~~~~~~~~~~~n-v~~i~~d~~~~l  124 (170)
                      +++.|++|++..      ++.+ ++++++|+.+.+
T Consensus       158 al~~A~~n~~~~------~l~~~v~~~~~D~~~~~  186 (284)
T 1nv8_A          158 AVEIARKNAERH------GVSDRFFVRKGEFLEPF  186 (284)
T ss_dssp             HHHHHHHHHHHT------TCTTSEEEEESSTTGGG
T ss_pred             HHHHHHHHHHHc------CCCCceEEEECcchhhc
Confidence            999999999875      5554 999999998754

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.21  E-value=2.3e-11  Score=94.16  Aligned_cols=60  Identities=18%  Similarity=0.230  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+|+..+...|+|+|+|+.|++.+.++++..        .|+.++.+|+..
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--------~~v~~~~~d~~~  116 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--------NNIIPLLFDASK  116 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--------SSEEEECSCTTC
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--------CCeEEEEcCCCC
Confidence            468999999999999999999887668999999999988777665432        478888887764

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.21  E-value=3.1e-11  Score=95.47  Aligned_cols=63  Identities=21%  Similarity=0.302  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|+++++..     +..+++.++.+|+.+.
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~  108 (267)
T 3kkz_A           46 EKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQS-----GLQNRVTGIVGSMDDL  108 (267)
T ss_dssp             TTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEECCTTSC
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHc-----CCCcCcEEEEcChhhC
Confidence            3689999999999999999998 6779999999999999999998775     2225699999998753

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.21  E-value=5.3e-11  Score=90.42  Aligned_cols=63  Identities=24%  Similarity=0.268  Sum_probs=56.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..++..+|+.+++|+|+|+.+++.|++++...      +.+|+.++.+|+....
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~  128 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL------KLENIEPVQSRVEEFP  128 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT------TCSSEEEEECCTTTSC
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEecchhhCC
Confidence            47999999999999999999988889999999999999999998875      5677999999987654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.20  E-value=1.9e-11  Score=93.56  Aligned_cols=63  Identities=19%  Similarity=0.232  Sum_probs=54.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC--CCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY--ENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~i~~d~~~~l~  125 (170)
                      +.+|||+|||+|.+++.++.... ..|+|+|+|+.+++.|+++++..      ++  +++.++.+|+.+.++
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~------~~~~~~v~~~~~d~~~~~~  118 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTL------KCSSEQAEVINQSSLDFLK  118 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT------TCCTTTEEEECSCHHHHTT
T ss_pred             CCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHh------CCCccceEEEECCHHHHHH
Confidence            57999999999999998776643 58999999999999999998775      55  689999999887653

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.20  E-value=8.7e-12  Score=97.95  Aligned_cols=64  Identities=17%  Similarity=0.177  Sum_probs=56.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~  125 (170)
                      ..+|||||||+|..+..+|+..| +.+++++|+++++++.|+++++..      ++ ++|+++.+|+.+.++
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------g~~~~i~~~~gda~~~l~  136 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA------GVEHKINFIESDAMLALD  136 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT------TCGGGEEEEESCHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEEcCHHHHHH
Confidence            57999999999999999999887 689999999999999999998875      44 369999999987643

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.20  E-value=3.2e-11  Score=94.70  Aligned_cols=65  Identities=15%  Similarity=0.265  Sum_probs=57.4

Q ss_pred             CCCCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC-eEEEEcchhhhc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN-IACIRTNAMKYL  124 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~i~~d~~~~l  124 (170)
                      .++.+|||+|||+|.++..++.. .|..+++|+|+++++++.|+++++..      +.++ +.++.+|+.+.+
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~  158 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA------GFDDRVTIKLKDIYEGI  158 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH------TCTTTEEEECSCGGGCC
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc------CCCCceEEEECchhhcc
Confidence            34689999999999999999998 77889999999999999999999876      5555 999999998654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.20  E-value=3.7e-11  Score=95.25  Aligned_cols=63  Identities=17%  Similarity=0.328  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..++..+|+.+++|+|+++.+++.|+++....      +.+|+.++.+|+...
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~   99 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN------GIKNVKFLQANIFSL   99 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCGGGC
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEcccccC
Confidence            468999999999999999999998899999999999999999998775      567899999998763

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.20  E-value=9.9e-12  Score=96.04  Aligned_cols=65  Identities=14%  Similarity=0.091  Sum_probs=56.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||||||+|.++..+++..+ +.+|+|+|+++.+++.|+++++..     +..++++++.+|+.+.+
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----g~~~~i~~~~~d~~~~~  134 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA-----EAEHKIDLRLKPALETL  134 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-----TCTTTEEEEESCHHHHH
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-----CCCCeEEEEEcCHHHHH
Confidence            357999999999999999999876 679999999999999999998775     22268999999987654

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.19  E-value=3.1e-11  Score=92.38  Aligned_cols=61  Identities=23%  Similarity=0.433  Sum_probs=55.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..+++.. |..+|+|+|+|+.+++.|+++....      +.+++.++.+|+..
T Consensus        38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~   99 (219)
T 3dh0_A           38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL------GLKNVEVLKSEENK   99 (219)
T ss_dssp             TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH------TCTTEEEEECBTTB
T ss_pred             CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeccccc
Confidence            5799999999999999999986 6679999999999999999998876      56689999999875

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.19  E-value=2.3e-11  Score=94.75  Aligned_cols=61  Identities=15%  Similarity=0.169  Sum_probs=54.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l  124 (170)
                      +.+|||+|||+|.++..++...  .+|+|+|+|+.+++.|+++++..      ++ +++.++++|+....
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~~~  140 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVY------GIADKIEFICGDFLLLA  140 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT------TCGGGEEEEESCHHHHG
T ss_pred             CCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHc------CCCcCeEEEECChHHhc
Confidence            6899999999999999999874  78999999999999999998875      44 58999999998764

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.18  E-value=3.2e-11  Score=92.62  Aligned_cols=65  Identities=23%  Similarity=0.306  Sum_probs=52.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++..+|+.+|+|+|+|+.|++.+.+++++...  ..+.+|+.++++|+.+
T Consensus        28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~--~~~~~~v~~~~~d~~~   92 (218)
T 3mq2_A           28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPA--KGGLPNLLYLWATAER   92 (218)
T ss_dssp             SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGG--GTCCTTEEEEECCSTT
T ss_pred             CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhh--hcCCCceEEEecchhh
Confidence            5799999999999999999999889999999999999865544322100  1256799999999876

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.18  E-value=3.7e-11  Score=95.14  Aligned_cols=75  Identities=24%  Similarity=0.271  Sum_probs=61.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhccCCCchhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLPNYFRKAQVR  134 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~~~f~~~~l~  134 (170)
                      +.+|||||||+|.++..+|...+. +|+|+|+++.+++.|+++++..      ++ +++.++++|+.+... .++.+.+|
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~------~~~~~v~~~~~D~~~~~~-~~~~~~fD  121 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYN------QLEDQIEIIEYDLKKITD-LIPKERAD  121 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHT------TCTTTEEEECSCGGGGGG-TSCTTCEE
T ss_pred             CCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHC------CCcccEEEEECcHHHhhh-hhccCCcc
Confidence            579999999999999999998764 8999999999999999999875      44 469999999987653 23345555


Q ss_pred             hhHh
Q psy13087        135 RCFA  138 (170)
Q Consensus       135 ~i~~  138 (170)
                      .|+.
T Consensus       122 ~Ii~  125 (259)
T 3lpm_A          122 IVTC  125 (259)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.18  E-value=6e-11  Score=92.89  Aligned_cols=60  Identities=17%  Similarity=0.335  Sum_probs=53.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..+++..+. +|+|+|+|+.+++.|++++...      +++ ++.++.+|+..
T Consensus        47 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~  107 (257)
T 3f4k_A           47 DAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKA------NCADRVKGITGSMDN  107 (257)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEECCTTS
T ss_pred             CCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHc------CCCCceEEEECChhh
Confidence            579999999999999999999874 8999999999999999998775      444 49999999865

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.18  E-value=6.3e-11  Score=90.32  Aligned_cols=62  Identities=13%  Similarity=0.155  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||||||+|.++..+++.  ..+|+|+|+++.+++.|+++++..      +.+|++++.+|+...+
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~  138 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNL------DLHNVSTRHGDGWQGW  138 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHc------CCCceEEEECCcccCC
Confidence            4689999999999999999998  568999999999999999998875      5678999999987643

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.18  E-value=2.1e-11  Score=96.40  Aligned_cols=62  Identities=21%  Similarity=0.222  Sum_probs=53.4

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++.+|||||||+|.++..+|+.. |...|+|+|++++|++.+++++++        .+|+..+.+|+..
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~--------~~ni~~V~~d~~~  137 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD--------RRNIFPILGDARF  137 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT--------CTTEEEEESCTTC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh--------hcCeeEEEEeccC
Confidence            4678999999999999999999974 778999999999999999887643        3689888887764

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.17  E-value=2.4e-11  Score=97.73  Aligned_cols=65  Identities=11%  Similarity=0.197  Sum_probs=56.0

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC-eEEEEcchhhhcc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN-IACIRTNAMKYLP  125 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~i~~d~~~~l~  125 (170)
                      .++.+|||+|||+|.+++.+|+..+. +|+|+|+|+.+++.|+++++..      ++.+ ++++++|+.+.+.
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n------~~~~~v~~~~~D~~~~~~  189 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLN------KVEDRMSAYNMDNRDFPG  189 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHT------TCTTTEEEECSCTTTCCC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHc------CCCceEEEEECCHHHhcc
Confidence            34789999999999999999998654 7999999999999999998774      4554 9999999987653

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.17  E-value=6.3e-11  Score=92.70  Aligned_cols=62  Identities=21%  Similarity=0.324  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..++... +.+|+|+|+|+.+++.|+++++..      ++ +|+.++.+|+.+.
T Consensus        36 ~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~------~~~~~v~~~~~d~~~~   98 (256)
T 1nkv_A           36 PGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEEL------GVSERVHFIHNDAAGY   98 (256)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEESCCTTC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc------CCCcceEEEECChHhC
Confidence            36899999999999999999987 568999999999999999998765      33 4899999998763

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.17  E-value=1.5e-11  Score=96.07  Aligned_cols=63  Identities=13%  Similarity=0.113  Sum_probs=55.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|..+..++...| +.+|+|+|+++++++.|+++++..      +. ++|.++.+|+.+.+
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------g~~~~i~~~~~d~~~~l  137 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA------GVAEKISLRLGPALATL  137 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH------TCGGGEEEEESCHHHHH
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEEcCHHHHH
Confidence            57999999999999999999886 679999999999999999998876      34 46999999987654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.17  E-value=2.1e-11  Score=102.37  Aligned_cols=63  Identities=22%  Similarity=0.208  Sum_probs=55.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC---CeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE---NIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~---nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.+++.+++.+|+.+|+|+|+|+.+++.|+++++..      ++.   +++++.+|+.+.+
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~n------gl~~~~~v~~~~~D~~~~~  288 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN------MPEALDRCEFMINNALSGV  288 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH------CGGGGGGEEEEECSTTTTC
T ss_pred             CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHc------CCCcCceEEEEechhhccC
Confidence            47999999999999999999999899999999999999999999875      332   5888999987643

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.16  E-value=1.9e-11  Score=95.94  Aligned_cols=62  Identities=11%  Similarity=-0.047  Sum_probs=52.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||||||+|..+..+++..| .+++|||+|+.+++.|+++.+..       ..+++++.+|+...+
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~-------~~~~~~~~~~a~~~~  121 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVA  121 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHG
T ss_pred             CCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhC-------CCceEEEeehHHhhc
Confidence            368999999999999999998766 48999999999999999987552       357889999887654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.16  E-value=1.5e-11  Score=97.89  Aligned_cols=78  Identities=9%  Similarity=0.181  Sum_probs=61.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH---HhhcCCCCCC-CeEEEEcchhhhcc----CC
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA---LRSQNKGQYE-NIACIRTNAMKYLP----NY  127 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~---~~~~~~~~~~-nv~~i~~d~~~~l~----~~  127 (170)
                      +.+|||||||+|.+++.++...|..+|+|||+++.+++.|+++++.   .      ++. ++.++++|+.+.++    ..
T Consensus        37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~------~l~~~v~~~~~D~~~~~~~~~~~~  110 (260)
T 2ozv_A           37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNA------AFSARIEVLEADVTLRAKARVEAG  110 (260)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGT------TTGGGEEEEECCTTCCHHHHHHTT
T ss_pred             CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhC------CCcceEEEEeCCHHHHhhhhhhhc
Confidence            5799999999999999999999888999999999999999999765   3      333 69999999876532    12


Q ss_pred             CchhhhhhhHhh
Q psy13087        128 FRKAQVRRCFAN  139 (170)
Q Consensus       128 f~~~~l~~i~~~  139 (170)
                      ++++.+|.|+.+
T Consensus       111 ~~~~~fD~Vv~n  122 (260)
T 2ozv_A          111 LPDEHFHHVIMN  122 (260)
T ss_dssp             CCTTCEEEEEEC
T ss_pred             cCCCCcCEEEEC
Confidence            334455555543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.16  E-value=6.8e-11  Score=86.72  Aligned_cols=60  Identities=12%  Similarity=0.065  Sum_probs=52.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+|||+|||+|.++..++...+.  ++|+|+|+.+++.|+++++..      +. +++++++|+.+.+
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~------~~-~~~~~~~d~~~~~  101 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRT------GL-GARVVALPVEVFL  101 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHH------TC-CCEEECSCHHHHH
T ss_pred             CCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHc------CC-ceEEEeccHHHHH
Confidence            579999999999999999998654  999999999999999998876      44 8999999987753

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.16  E-value=7.7e-11  Score=92.76  Aligned_cols=59  Identities=12%  Similarity=0.255  Sum_probs=52.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++...+  +|+|+|+|+.|++.|+++++..      +.+|+.++.+|+..
T Consensus        38 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~------~~~~v~~~~~d~~~   96 (260)
T 1vl5_A           38 NEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGN------GHQQVEYVQGDAEQ   96 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCC-C
T ss_pred             CCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhc------CCCceEEEEecHHh
Confidence            68999999999999999999864  7999999999999999998764      56789999999875

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.15  E-value=4.7e-11  Score=92.25  Aligned_cols=58  Identities=12%  Similarity=0.230  Sum_probs=51.9

Q ss_pred             CCeEEEEcCc-cchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087         56 KVEFVDVGCG-YGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM  121 (170)
Q Consensus        56 ~~~vLDiGCG-~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~  121 (170)
                      +.+||||||| +|.++..+++.. ..+|+|+|+++.+++.|+++++..      +. ++.++.+|+.
T Consensus        56 ~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~------~~-~v~~~~~d~~  114 (230)
T 3evz_A           56 GEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERN------NS-NVRLVKSNGG  114 (230)
T ss_dssp             SCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHT------TC-CCEEEECSSC
T ss_pred             CCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHh------CC-CcEEEeCCch
Confidence            6899999999 999999999986 568999999999999999998875      44 8999999964

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.15  E-value=3.8e-11  Score=93.29  Aligned_cols=63  Identities=16%  Similarity=0.260  Sum_probs=56.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..+++..|+.+|+|+|+++.+++.|+++++..      +. +++.++.+|+...+
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~  118 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKAL------GLESRIELLFGDALQLG  118 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHT------TCTTTEEEECSCGGGSH
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEECCHHHHH
Confidence            57999999999999999999988889999999999999999998875      44 46999999987643

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.15  E-value=8.2e-11  Score=90.22  Aligned_cols=61  Identities=23%  Similarity=0.353  Sum_probs=52.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-----CeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-----NIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-----nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++...+..+++|+|+|+.+++.|++++...      +++     ++.++.+|+..
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~~~~~v~~~~~d~~~   95 (219)
T 3jwg_A           30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID------RLPEMQRKRISLFQSSLVY   95 (219)
T ss_dssp             CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGG------GSCHHHHTTEEEEECCSSS
T ss_pred             CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhh------ccccccCcceEEEeCcccc
Confidence            57999999999999999999888789999999999999999987653      222     79999988743

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.15  E-value=2.1e-11  Score=95.31  Aligned_cols=63  Identities=16%  Similarity=0.145  Sum_probs=55.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC-eEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN-IACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..+++..| ..+|+|+|+++.+++.|+++++..      +..+ +.++.+|+.+.+
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------g~~~~v~~~~~d~~~~~  125 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN------GLENKIFLKLGSALETL  125 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT------TCGGGEEEEESCHHHHH
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCCEEEEECCHHHHH
Confidence            57999999999999999999986 679999999999999999998775      4444 999999987654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.15  E-value=4.9e-11  Score=92.78  Aligned_cols=60  Identities=18%  Similarity=0.257  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+|...+...|+|+|+|+.+++.|+++++.        .+|+.++.+|+..
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~v~~~~~d~~~  133 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--------RENIIPILGDANK  133 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--------CTTEEEEECCTTC
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc--------CCCeEEEECCCCC
Confidence            46899999999999999999998767999999999999999988643        2689999998875

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.14  E-value=7.9e-11  Score=87.47  Aligned_cols=62  Identities=15%  Similarity=0.187  Sum_probs=53.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l  124 (170)
                      +.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|+++++..      ++ +++.++.+|+.+.+
T Consensus        32 ~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~~~   94 (177)
T 2esr_A           32 GGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMT------KAENRFTLLKMEAERAI   94 (177)
T ss_dssp             SCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTT------TCGGGEEEECSCHHHHH
T ss_pred             CCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHc------CCCCceEEEECcHHHhH
Confidence            579999999999999999987 5568999999999999999998764      34 47999999988753

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.14  E-value=1.2e-10  Score=93.77  Aligned_cols=62  Identities=11%  Similarity=0.236  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|++++...      +++ ++.++.+|+.+.
T Consensus        72 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~  134 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEV------DSPRRKEVRIQGWEEF  134 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHS------CCSSCEEEEECCGGGC
T ss_pred             CcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhc------CCCCceEEEECCHHHc
Confidence            468999999999999999999876 78999999999999999998775      343 899999998764

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.14  E-value=2.2e-10  Score=87.12  Aligned_cols=63  Identities=21%  Similarity=0.227  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||||||+|.++..+++. +..+++|+|+++.+++.|++++...      +..++.++.+|+....
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~  122 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALN------GIYDIALQKTSLLADV  122 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHT------TCCCCEEEESSTTTTC
T ss_pred             CCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEeccccccC
Confidence            3689999999999999998875 5569999999999999999998875      5567999999987654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.14  E-value=4.9e-12  Score=95.92  Aligned_cols=77  Identities=13%  Similarity=0.228  Sum_probs=45.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccC-CCchhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPN-YFRKAQVR  134 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~-~f~~~~l~  134 (170)
                      +.+|||+|||+|.++..+++..++.+++|+|+|+.+++.|++++...      +. +++++++|+.+.++. ....+.+|
T Consensus        31 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~-~~~~~~~d~~~~~~~~~~~~~~fD  103 (215)
T 4dzr_A           31 GTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERF------GA-VVDWAAADGIEWLIERAERGRPWH  103 (215)
T ss_dssp             TEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------------CCHHHHHHHHHHHHHTTCCBS
T ss_pred             CCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh------CC-ceEEEEcchHhhhhhhhhccCccc
Confidence            57999999999999999999998889999999999999999998764      33 788888888764321 00115566


Q ss_pred             hhHhh
Q psy13087        135 RCFAN  139 (170)
Q Consensus       135 ~i~~~  139 (170)
                      .|+.+
T Consensus       104 ~i~~n  108 (215)
T 4dzr_A          104 AIVSN  108 (215)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            66653

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.14  E-value=1.4e-10  Score=90.42  Aligned_cols=60  Identities=17%  Similarity=0.266  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..++...+  +|+|+|+|+.+++.|++++...      +.+|+.++.+|+..
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~   80 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEK------GVENVRFQQGTAES   80 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHH------TCCSEEEEECBTTB
T ss_pred             CCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHc------CCCCeEEEeccccc
Confidence            368999999999999999998864  7999999999999999998776      56789999999865

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.13  E-value=5.5e-11  Score=91.99  Aligned_cols=60  Identities=20%  Similarity=0.331  Sum_probs=53.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++..+|+.+++|+|+|+.+++.|+++....        .++.++.+|+.+.
T Consensus        45 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~~  104 (234)
T 3dtn_A           45 NPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN--------LKVKYIEADYSKY  104 (234)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC--------TTEEEEESCTTTC
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC--------CCEEEEeCchhcc
Confidence            58999999999999999999998889999999999999999886432        3899999988764

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.13  E-value=1.3e-10  Score=89.04  Aligned_cols=60  Identities=22%  Similarity=0.351  Sum_probs=52.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-----CeEEEEcchh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-----NIACIRTNAM  121 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-----nv~~i~~d~~  121 (170)
                      +.+|||||||+|.++..+++..+..+++|+|+|+.+++.|++++...      +++     ++.++.+|+.
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~~~~~v~~~~~d~~   94 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL------RLPRNQWERLQLIQGALT   94 (217)
T ss_dssp             CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTC------CCCHHHHTTEEEEECCTT
T ss_pred             CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHh------cCCcccCcceEEEeCCcc
Confidence            57999999999999999999888789999999999999999987543      333     7999999875

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.13  E-value=9.8e-11  Score=89.71  Aligned_cols=66  Identities=11%  Similarity=0.026  Sum_probs=50.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhh--cCC----CCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRS--QNK----GQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~--~~~----~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||+|||+|..+..+|+.  +.+|+|||+|+.|++.|+++......  ..+    ....+++++++|+.+.
T Consensus        23 ~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l   94 (203)
T 1pjz_A           23 GARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   94 (203)
T ss_dssp             TCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             CCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence            579999999999999999998  46899999999999999887532000  000    0135799999987653

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.13  E-value=1.4e-10  Score=86.38  Aligned_cols=61  Identities=16%  Similarity=0.354  Sum_probs=53.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC--eEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN--IACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..++..  ..+++|+|+++.+++.|++++...      +.++  +.++.+|+.+.+
T Consensus        53 ~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~------~~~~~~~~~~~~d~~~~~  115 (194)
T 1dus_A           53 DDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLN------NLDNYDIRVVHSDLYENV  115 (194)
T ss_dssp             TCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHT------TCTTSCEEEEECSTTTTC
T ss_pred             CCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHc------CCCccceEEEECchhccc
Confidence            579999999999999999988  578999999999999999998775      5566  999999987644

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.12  E-value=1.2e-10  Score=89.67  Aligned_cols=59  Identities=14%  Similarity=0.194  Sum_probs=51.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~  122 (170)
                      ..+|||||||+|.+++.++...|+++|+|+|+|+.|++.|+++++..      +.. |+++  +|...
T Consensus        50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~------g~~~~v~~--~d~~~  109 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKL------KTTIKYRF--LNKES  109 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHS------CCSSEEEE--ECCHH
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc------CCCccEEE--ecccc
Confidence            57999999999999999999999999999999999999999999875      445 6777  44443

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.12  E-value=2.9e-11  Score=99.54  Aligned_cols=62  Identities=8%  Similarity=0.107  Sum_probs=54.1

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      .+|||||||+|.++.++++.+|+.++++||+++.+++.|+++....      ..++++++.+|+.+++
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~------~~~rv~v~~~Da~~~l  152 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP------RAPRVKIRVDDARMVA  152 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC------CTTTEEEEESCHHHHH
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc------CCCceEEEECcHHHHH
Confidence            3899999999999999999899999999999999999999886321      2368999999998775

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.12  E-value=1.1e-10  Score=94.16  Aligned_cols=46  Identities=17%  Similarity=0.434  Sum_probs=41.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      +.+|||||||+|.++..++..++..+|+|||+|+.+++.|+++++.
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~   92 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRH   92 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHh
Confidence            5799999999999999999999888999999999999999998654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.11  E-value=1.4e-10  Score=94.66  Aligned_cols=64  Identities=19%  Similarity=0.278  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||||||+|.++..+++..+ +.+|+|+|+|+++++.|+++++..      +++|+.++.+|+.+.+
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------g~~~v~~~~~d~~~~~  139 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL------GIENVIFVCGDGYYGV  139 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCC
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCeEEEECChhhcc
Confidence            468999999999999999999876 468999999999999999998775      6678999999987643

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.11  E-value=1.9e-10  Score=85.67  Aligned_cols=62  Identities=16%  Similarity=0.162  Sum_probs=53.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l  124 (170)
                      +.+|||+|||+|.++..++.. +..+|+|+|+++.+++.|+++++..      ++ +++.++++|+.+.+
T Consensus        45 ~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~~~  107 (187)
T 2fhp_A           45 GGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAIT------KEPEKFEVRKMDANRAL  107 (187)
T ss_dssp             SCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHH------TCGGGEEEEESCHHHHH
T ss_pred             CCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHh------CCCcceEEEECcHHHHH
Confidence            579999999999999998874 4568999999999999999998876      33 57999999988753

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.11  E-value=2.3e-10  Score=87.49  Aligned_cols=64  Identities=8%  Similarity=-0.008  Sum_probs=56.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~  125 (170)
                      +.+|||||||+|..+..+++..| +.+|+|+|+++.+++.|+++++..      ++ ++++++.+|+.+.++
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~~  122 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN------GLIDRVELQVGDPLGIAA  122 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH------SGGGGEEEEESCHHHHHT
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC------CCCceEEEEEecHHHHhc
Confidence            47999999999999999999887 779999999999999999998875      33 469999999987654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.11  E-value=4.7e-11  Score=93.06  Aligned_cols=61  Identities=11%  Similarity=-0.031  Sum_probs=51.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..++...+ .+|+|+|+|+.|++.|+++.+..      + .++.++.+|+.+.
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~------~-~~v~~~~~d~~~~  120 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ------T-HKVIPLKGLWEDV  120 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC------S-SEEEEEESCHHHH
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhc------C-CCeEEEecCHHHh
Confidence            357999999999999999987543 48999999999999999987553      2 5799999998875

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.11  E-value=6.9e-11  Score=94.46  Aligned_cols=58  Identities=19%  Similarity=0.299  Sum_probs=51.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..+++..  .+|+|||+++.+++.++++...        .+|++++++|+.+.
T Consensus        30 ~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~--------~~~v~~i~~D~~~~   87 (255)
T 3tqs_A           30 TDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQ--------QKNITIYQNDALQF   87 (255)
T ss_dssp             TCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTT--------CTTEEEEESCTTTC
T ss_pred             cCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhh--------CCCcEEEEcchHhC
Confidence            5799999999999999999884  6899999999999999988742        36899999999875

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.10  E-value=1.3e-10  Score=88.21  Aligned_cols=60  Identities=17%  Similarity=0.329  Sum_probs=52.8

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      .+|||||||+|.++..+++. ++.+++|+|+|+.+++.|++++...     +..+++.++.+|+..
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~  104 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADA-----NLNDRIQIVQGDVHN  104 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEECBTTB
T ss_pred             CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhc-----cccCceEEEEcCHHH
Confidence            39999999999999999998 6779999999999999999998775     223589999999876

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.10  E-value=1.6e-10  Score=93.73  Aligned_cols=62  Identities=23%  Similarity=0.398  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+++.+ +.+|+|+|+++.+++.|+++++..     +..+++.++.+|+.+
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~  178 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRAREL-----RIDDHVRSRVCNMLD  178 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEECCTTS
T ss_pred             CCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-----CCCCceEEEECChhc
Confidence            46899999999999999999985 468999999999999999998875     222479999999875

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.10  E-value=1.5e-10  Score=92.46  Aligned_cols=64  Identities=13%  Similarity=0.185  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCC-CCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKG-QYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~-~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||+|||+|.++..+++. .|..+|+|+|+++.+++.|+++++.      . +.+|+.++.+|+.+.+
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~g~~~v~~~~~d~~~~~  175 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE------FYDIGNVRTSRSDIADFI  175 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT------TSCCTTEEEECSCTTTCC
T ss_pred             CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh------cCCCCcEEEEECchhccC
Confidence            4689999999999999999997 6778999999999999999998764      2 3468999999987643

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.10  E-value=1.5e-10  Score=98.64  Aligned_cols=77  Identities=13%  Similarity=0.223  Sum_probs=63.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC-Cchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY-FRKAQV  133 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~-f~~~~l  133 (170)
                      ++.+|||+|||+|.++..+|..  ..+|+|+|+|+++++.|+++++..      +++|+.++.+|+.+.++.. +..+.+
T Consensus       286 ~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~------~~~~v~f~~~d~~~~l~~~~~~~~~f  357 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLN------GLQNVTFYHENLEEDVTKQPWAKNGF  357 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCTTSCCSSSGGGTTCC
T ss_pred             CCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEECCHHHHhhhhhhhcCCC
Confidence            3579999999999999999988  468999999999999999998764      6679999999998865432 334456


Q ss_pred             hhhHhh
Q psy13087        134 RRCFAN  139 (170)
Q Consensus       134 ~~i~~~  139 (170)
                      |.|+.+
T Consensus       358 D~Vv~d  363 (433)
T 1uwv_A          358 DKVLLD  363 (433)
T ss_dssp             SEEEEC
T ss_pred             CEEEEC
Confidence            666653

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.09  E-value=2.5e-10  Score=90.17  Aligned_cols=62  Identities=24%  Similarity=0.339  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|++++...     +..+++.++.+|+.+
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~  122 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAA-----GLANRVTFSYADAMD  122 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEECCTTS
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEECcccc
Confidence            46899999999999999999876 579999999999999999998764     223479999998865

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.08  E-value=1.2e-10  Score=90.55  Aligned_cols=60  Identities=17%  Similarity=0.254  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+++.. |..+|+|+|+|+.+++.+.++++..        +|+.++.+|+..
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--------~~v~~~~~d~~~  137 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--------TNIIPVIEDARH  137 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--------TTEEEECSCTTC
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--------CCeEEEEcccCC
Confidence            46899999999999999999986 5679999999999999888877652        689999998876

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.08  E-value=1.7e-10  Score=92.05  Aligned_cols=64  Identities=14%  Similarity=0.193  Sum_probs=56.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l  124 (170)
                      ++.+|||+|||+|.++..+++. .|..+|+|+|+++.+++.|+++++..      ++ +++.++.+|+.+.+
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~  177 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW------GLIERVTIKVRDISEGF  177 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT------TCGGGEEEECCCGGGCC
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc------CCCCCEEEEECCHHHcc
Confidence            4679999999999999999998 56789999999999999999998775      44 57999999987653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.08  E-value=5.9e-10  Score=85.16  Aligned_cols=63  Identities=14%  Similarity=0.263  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++.. |..+|+|+|+++.+++.|+++....      +.+++.++.+|+...
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~  140 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKL------GYDNVIVIVGDGTLG  140 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH------TCTTEEEEESCGGGC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEECCcccC
Confidence            46899999999999999999987 5579999999999999999998876      567899999998643

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.08  E-value=5.1e-10  Score=90.05  Aligned_cols=63  Identities=19%  Similarity=0.325  Sum_probs=54.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++..+ +..+|+|+|+|+.+++.|+++++..    .+..+++.++.+|+.+
T Consensus        37 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~~v~~~~~d~~~  100 (299)
T 3g5t_A           37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS----PDTYKNVSFKISSSDD  100 (299)
T ss_dssp             CSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC----C-CCTTEEEEECCTTC
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc----cCCCCceEEEEcCHHh
Confidence            6899999999999999999876 7889999999999999999998652    0134689999999875

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.07  E-value=6.6e-10  Score=83.32  Aligned_cols=60  Identities=13%  Similarity=0.094  Sum_probs=52.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++..  +.+++|+|+|+.+++.|++++...      +.+++.++.+|+...
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~   92 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIE------NLDNLHTRVVDLNNL   92 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH------TCTTEEEEECCGGGC
T ss_pred             CCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhC------CCCCcEEEEcchhhC
Confidence            579999999999999999987  568999999999999999998775      556899999988753

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.07  E-value=6.2e-11  Score=96.33  Aligned_cols=68  Identities=13%  Similarity=0.065  Sum_probs=55.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +.+|||||||+|.++..+++..+..+|++||+++.+++.|++++......  -..++++++.+|+.++++
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~l~  158 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCG--FDDPRAEIVIANGAEYVR  158 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGG--GGCTTEEEEESCHHHHGG
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccc--cCCCceEEEECcHHHHHh
Confidence            47999999999999999998877789999999999999999987542100  013689999999887653

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.07  E-value=3.2e-10  Score=90.80  Aligned_cols=62  Identities=23%  Similarity=0.255  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|+++....     +..+++.++.+|+..
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~  143 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQA-----GLADNITVKYGSFLE  143 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHH-----TCTTTEEEEECCTTS
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhc-----CCCcceEEEEcCccc
Confidence            36899999999999999999986 458999999999999999998775     233579999998875

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.06  E-value=3.3e-10  Score=86.77  Aligned_cols=58  Identities=21%  Similarity=0.334  Sum_probs=51.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++...+  +++|+|+|+.+++.|+++....      + .++.++.+|+..
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~------~-~~~~~~~~d~~~   96 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR------E-SNVEFIVGDARK   96 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT------T-CCCEEEECCTTS
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc------C-CCceEEECchhc
Confidence            57999999999999999999865  7999999999999999998764      3 678999988765

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.06  E-value=1.1e-10  Score=96.62  Aligned_cols=68  Identities=16%  Similarity=0.152  Sum_probs=55.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +.+|||||||+|.++..+++..+..+|++||+|+.+++.|++++.......  ..++++++.+|+.++++
T Consensus       121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl--~~~rv~~~~~D~~~~l~  188 (334)
T 1xj5_A          121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY--EDPRVNLVIGDGVAFLK  188 (334)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--GSTTEEEEESCHHHHHH
T ss_pred             CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc--CCCcEEEEECCHHHHHH
Confidence            579999999999999999998777899999999999999999876431000  12579999999887653

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.06  E-value=2.6e-10  Score=90.92  Aligned_cols=61  Identities=16%  Similarity=0.246  Sum_probs=52.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|++++...      +. +++.++.+|+.+..
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~  130 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAK------GVSDNMQFIHCAAQDVA  130 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-------CCGGGEEEEESCGGGTG
T ss_pred             CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc------CCCcceEEEEcCHHHhh
Confidence            579999999999999999988  568999999999999999998764      44 68999999987653

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.06  E-value=9.8e-10  Score=84.70  Aligned_cols=63  Identities=21%  Similarity=0.370  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-----CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCC-----CCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-----PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQ-----YENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-----p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~-----~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++..     |..+|+|+|+++.+++.|+++++..      +     .+|+.++.+|+...
T Consensus        80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~v~~~~~d~~~~  152 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRD------KPELLKIDNFKIIHKNIYQV  152 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHH------CGGGGSSTTEEEEECCGGGC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHc------CccccccCCEEEEECChHhc
Confidence            46899999999999999999986     4568999999999999999998875      3     57899999998763

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.05  E-value=1.1e-10  Score=94.05  Aligned_cols=68  Identities=13%  Similarity=0.140  Sum_probs=55.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +.+|||||||+|.++.++++..+..+|++||+++.+++.|++++......  -..++++++.+|+.++++
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~--~~~~rv~v~~~D~~~~l~  143 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK--LDDPRVDVQVDDGFMHIA  143 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT--TTSTTEEEEESCSHHHHH
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccc--cCCCceEEEECcHHHHHh
Confidence            47999999999999999998766679999999999999999987553110  023689999999887653

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.05  E-value=2.7e-10  Score=88.25  Aligned_cols=57  Identities=14%  Similarity=0.248  Sum_probs=49.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|+++.           ++++++.+|+.+.++
T Consensus        49 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~  105 (226)
T 3m33_A           49 QTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANA-----------PHADVYEWNGKGELP  105 (226)
T ss_dssp             TCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCSCSSCC
T ss_pred             CCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhC-----------CCceEEEcchhhccC
Confidence            689999999999999999998  568999999999999998771           579999999865443

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.05  E-value=2.5e-10  Score=95.59  Aligned_cols=69  Identities=13%  Similarity=0.192  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcC-C-CCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQN-K-GQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~-~-~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++.+ |+.+|+|+|+|+.+++.|+++++...... + -..+|+.++.+|+.+.
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l  154 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENL  154 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCG
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHh
Confidence            46899999999999999999986 67799999999999999999886531110 0 0226899999998764

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.05  E-value=3.5e-10  Score=92.82  Aligned_cols=85  Identities=14%  Similarity=0.191  Sum_probs=59.7

Q ss_pred             CCCCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhh----c-CCCCCCCeEEEEcchhhhccCC
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRS----Q-NKGQYENIACIRTNAMKYLPNY  127 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~----~-~~~~~~nv~~i~~d~~~~l~~~  127 (170)
                      .++.+|||+|||+|.++..+++. .|..+|+|+|+++.+++.|+++++....    + ..+..+|+.++.+|+.+.+.. 
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~-  182 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED-  182 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc-
Confidence            35789999999999999999998 4667999999999999999999876410    0 000136899999998764321 


Q ss_pred             CchhhhhhhHhh
Q psy13087        128 FRKAQVRRCFAN  139 (170)
Q Consensus       128 f~~~~l~~i~~~  139 (170)
                      ++.+.+|.|+..
T Consensus       183 ~~~~~fD~V~~~  194 (336)
T 2b25_A          183 IKSLTFDAVALD  194 (336)
T ss_dssp             -----EEEEEEC
T ss_pred             cCCCCeeEEEEC
Confidence            233345555543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.05  E-value=3.6e-10  Score=89.21  Aligned_cols=62  Identities=16%  Similarity=0.151  Sum_probs=50.3

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.++.+|||+|||+|.++..+|... +...|+|+|+++.|++...+.+++.        .||.++.+|+..
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--------~nv~~i~~Da~~  136 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--------PNIFPLLADARF  136 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--------TTEEEEECCTTC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------CCeEEEEccccc
Confidence            3467999999999999999999874 5679999999999987665544332        589999999864

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.04  E-value=4.6e-10  Score=91.73  Aligned_cols=61  Identities=13%  Similarity=0.287  Sum_probs=54.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||+|||+|.++..+++.+|+..|+|+|+|+.|++.|+++++..      + ++++++++|+...
T Consensus        27 g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~------g-~~v~~v~~d~~~l   87 (301)
T 1m6y_A           27 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF------S-DRVSLFKVSYREA   87 (301)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG------T-TTEEEEECCGGGH
T ss_pred             CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc------C-CcEEEEECCHHHH
Confidence            57999999999999999999988789999999999999999998664      3 6899999998753

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.04  E-value=2.1e-10  Score=95.97  Aligned_cols=76  Identities=22%  Similarity=0.152  Sum_probs=61.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhccCCCchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLPNYFRKAQV  133 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~~~f~~~~l  133 (170)
                      ++.+|||+|||+|.+++.+|...+...|+|+|+|+.+++.|+++++..      ++ ++++++++|+.+..   ++.+.+
T Consensus       217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~------gl~~~i~~~~~D~~~~~---~~~~~f  287 (373)
T 3tm4_A          217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA------GVLDKIKFIQGDATQLS---QYVDSV  287 (373)
T ss_dssp             CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHT------TCGGGCEEEECCGGGGG---GTCSCE
T ss_pred             CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc------CCCCceEEEECChhhCC---cccCCc
Confidence            367999999999999999999876558999999999999999999875      44 68999999998743   123445


Q ss_pred             hhhHhh
Q psy13087        134 RRCFAN  139 (170)
Q Consensus       134 ~~i~~~  139 (170)
                      |.|+.+
T Consensus       288 D~Ii~n  293 (373)
T 3tm4_A          288 DFAISN  293 (373)
T ss_dssp             EEEEEE
T ss_pred             CEEEEC
Confidence            555553

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.04  E-value=4.2e-10  Score=89.80  Aligned_cols=60  Identities=15%  Similarity=0.192  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|++++...      +. ++.++.+|+...
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~------~~-~~~~~~~d~~~~  179 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKE------NL-NISTALYDINAA  179 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------TC-CEEEEECCGGGC
T ss_pred             CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHc------CC-ceEEEEeccccc
Confidence            4689999999999999999988  468999999999999999998774      44 899999998763

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.04  E-value=1.7e-10  Score=92.09  Aligned_cols=53  Identities=15%  Similarity=0.248  Sum_probs=44.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++..+  .+|+|||+|+.|++.|++            .+||.++++|+.+
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~------------~~~v~~~~~~~e~   92 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALR------------HPRVTYAVAPAED   92 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCC------------CTTEEEEECCTTC
T ss_pred             CCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhh------------cCCceeehhhhhh
Confidence            4789999999999999999885  579999999999987642            2578888888765

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.04  E-value=2.2e-10  Score=88.49  Aligned_cols=60  Identities=22%  Similarity=0.207  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||+|||+|.++..++... +..+|+|+|+++.+++.++++++.        .+|+.++.+|+..
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~--------~~~v~~~~~d~~~  133 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--------RRNIVPILGDATK  133 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------CTTEEEEECCTTC
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc--------cCCCEEEEccCCC
Confidence            46799999999999999999885 557999999999999999888743        2689999999876

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.03  E-value=7.8e-10  Score=84.00  Aligned_cols=60  Identities=13%  Similarity=0.214  Sum_probs=52.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||+|||+|.++..++... ..+++|+|+++.+++.|+++++..      +. ++.++.+|+...
T Consensus        50 ~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~------~~-~~~~~~~d~~~~  109 (207)
T 1wy7_A           50 GKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEF------KG-KFKVFIGDVSEF  109 (207)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGG------TT-SEEEEESCGGGC
T ss_pred             cCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHc------CC-CEEEEECchHHc
Confidence            5799999999999999999873 347999999999999999998664      44 899999999863

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.03  E-value=5.3e-10  Score=92.49  Aligned_cols=64  Identities=14%  Similarity=0.164  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++..|||+|||+|.+++.+|... |+..++|+|+++.+++.|++|++..      +++++.++++|+.+..
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~------g~~~i~~~~~D~~~~~  267 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALAS------GLSWIRFLRADARHLP  267 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHT------TCTTCEEEECCGGGGG
T ss_pred             CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHc------CCCceEEEeCChhhCc
Confidence            35789999999999999999987 7789999999999999999999875      5568999999998753

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.03  E-value=3.1e-10  Score=92.53  Aligned_cols=59  Identities=25%  Similarity=0.322  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++.  ..+|+|||+++.+++.++++.+.        .+|++++++|+.+.
T Consensus        50 ~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~--------~~~v~vi~gD~l~~  108 (295)
T 3gru_A           50 KDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL--------YNNIEIIWGDALKV  108 (295)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH--------CSSEEEEESCTTTS
T ss_pred             CcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc--------CCCeEEEECchhhC
Confidence            4689999999999999999998  46899999999999999998763        26899999999863

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.03  E-value=5.8e-10  Score=89.28  Aligned_cols=61  Identities=25%  Similarity=0.416  Sum_probs=53.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++..+|. .+|+|+|+|+.+++.|+++....      + .|+.++.+|+.+.
T Consensus        23 ~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~-~~v~~~~~d~~~~   84 (284)
T 3gu3_A           23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL------P-YDSEFLEGDATEI   84 (284)
T ss_dssp             CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS------S-SEEEEEESCTTTC
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc------C-CceEEEEcchhhc
Confidence            579999999999999999999884 79999999999999999988653      2 3899999998763

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.03  E-value=8.4e-10  Score=85.92  Aligned_cols=60  Identities=15%  Similarity=0.221  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM  121 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~  121 (170)
                      ++.+|||||||+|.++..+++..+ .+|+|+|+++.+++.|+++++..      +++++.++.+|+.
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~  150 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERA------GVKNVHVILGDGS  150 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGG
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHc------CCCCcEEEECCcc
Confidence            467999999999999999999986 78999999999999999998775      6678999999974

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.03  E-value=1.1e-09  Score=81.15  Aligned_cols=62  Identities=19%  Similarity=0.278  Sum_probs=54.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l~  125 (170)
                      +.+|||+|||+|.++..++...  .+++|+|+++.+++.|+++++..      +. +++.++.+|+.+.++
T Consensus        34 ~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~~~~   96 (192)
T 1l3i_A           34 NDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRH------GLGDNVTLMEGDAPEALC   96 (192)
T ss_dssp             TCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHT------TCCTTEEEEESCHHHHHT
T ss_pred             CCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHc------CCCcceEEEecCHHHhcc
Confidence            5799999999999999999886  68999999999999999998765      44 689999999876443

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.03  E-value=1.1e-10  Score=95.56  Aligned_cols=68  Identities=13%  Similarity=0.087  Sum_probs=54.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..+++..+..++++||+++.+++.|++++....... -..++++++.+|+.+++
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~-~~~~~v~~~~~D~~~~l  145 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGA-FDDPRAVLVIDDARAYL  145 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTG-GGCTTEEEEESCHHHHH
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc-ccCCceEEEEchHHHHH
Confidence            579999999999999999998777799999999999999999876421000 01368999999998764

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.03  E-value=8e-10  Score=94.01  Aligned_cols=68  Identities=16%  Similarity=0.175  Sum_probs=53.8

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhh--cCCCC--CCCeEEEEcchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRS--QNKGQ--YENIACIRTNAMK  122 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~--~~~~~--~~nv~~i~~d~~~  122 (170)
                      .++.+|||||||+|.+++.+|...+...++|||+++.+++.|+++++..+.  .. .+  ..+|.++++|+.+
T Consensus       172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~-~Gl~~~rVefi~GD~~~  243 (438)
T 3uwp_A          172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKW-YGKKHAEYTLERGDFLS  243 (438)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHH-HTBCCCEEEEEECCTTS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHH-hCCCCCCeEEEECcccC
Confidence            457899999999999999999887655799999999999999987643210  00 12  2689999999865

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.03  E-value=4.8e-10  Score=89.14  Aligned_cols=66  Identities=9%  Similarity=0.006  Sum_probs=50.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHh-----hcCC------CCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALR-----SQNK------GQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~-----~~~~------~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||+|||+|..+..||+.  +.+|+|||+|+.|++.|+++.....     ...+      ....+|.++++|+.+.
T Consensus        69 ~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           69 GLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             SCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            579999999999999999987  5689999999999999976642100     0000      0125799999998764

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.03  E-value=6.3e-10  Score=87.03  Aligned_cols=64  Identities=22%  Similarity=0.186  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||+|||+|.++..++.. .|..+|+|+|+++.+++.|+++++..     .+.+++.++.+|+.+.
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----~g~~~v~~~~~d~~~~  160 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAF-----WQVENVRFHLGKLEEA  160 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH-----CCCCCEEEEESCGGGC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh-----cCCCCEEEEECchhhc
Confidence            4689999999999999999998 56789999999999999999998653     0246899999998765

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.03  E-value=4.4e-10  Score=92.00  Aligned_cols=65  Identities=11%  Similarity=0.122  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      .++.+|||+|||+|..+..+|...+ ...|+|+|+++.+++.++++++..      +..|+.++.+|+....
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~------g~~~v~~~~~D~~~~~  182 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL------GVLNVILFHSSSLHIG  182 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH------TCCSEEEESSCGGGGG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh------CCCeEEEEECChhhcc
Confidence            4568999999999999999999864 478999999999999999999887      6678999999987643

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.02  E-value=1.3e-10  Score=95.00  Aligned_cols=68  Identities=12%  Similarity=0.152  Sum_probs=55.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +.+|||||||+|.++..+++..+..++++||+++++++.|++++.......  ..++++++.+|+.++++
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~--~~~rv~v~~~Da~~~l~  163 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY--SSSKLTLHVGDGFEFMK  163 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--GCTTEEEEESCHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhccc--CCCcEEEEECcHHHHHh
Confidence            579999999999999999988777899999999999999999876421000  13689999999987653

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.02  E-value=1.8e-10  Score=90.17  Aligned_cols=60  Identities=17%  Similarity=0.364  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|+++...        .+++.++.+|+...
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~  114 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSG--------NNKIIFEANDILTK  114 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCS--------CTTEEEEECCTTTC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhc--------CCCeEEEECccccC
Confidence            36799999999999999999986 57999999999999999887532        16899999988753

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.02  E-value=3.6e-10  Score=89.59  Aligned_cols=61  Identities=16%  Similarity=0.115  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||+|||+|.+++.+++..+  +|+|+|+++.+++.|+++++..      +.. +.++.+|+...+
T Consensus       120 ~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~------~~~-v~~~~~d~~~~~  180 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRN------GVR-PRFLEGSLEAAL  180 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHT------TCC-CEEEESCHHHHG
T ss_pred             CCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc------CCc-EEEEECChhhcC
Confidence            468999999999999999998754  8999999999999999998764      444 899999987644

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.02  E-value=4.1e-10  Score=85.60  Aligned_cols=56  Identities=11%  Similarity=0.170  Sum_probs=49.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++..  +.+++|+|+|+.+++.|++    .      +.+++.++.+|+...
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~------~~~~~~~~~~d~~~~  102 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----H------GLDNVEFRQQDLFDW  102 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----G------CCTTEEEEECCTTSC
T ss_pred             CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----c------CCCCeEEEecccccC
Confidence            579999999999999999998  5689999999999999987    2      457899999998765

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.01  E-value=1.1e-10  Score=96.14  Aligned_cols=67  Identities=19%  Similarity=0.155  Sum_probs=54.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..+++..+..+|+++|+|+++++.|++++......  -..++++++.+|+.+++
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~--~~~~~v~~~~~D~~~~l  183 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG--YEDKRVNVFIEDASKFL  183 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG--GGSTTEEEEESCHHHHH
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccc--cCCCcEEEEEccHHHHH
Confidence            57999999999999999998777789999999999999999986541000  01367999999987754

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.01  E-value=7.6e-10  Score=86.16  Aligned_cols=57  Identities=21%  Similarity=0.412  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..++...+  +|+|+|+|+.+++.|+++.         ...++.++.+|+.+
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~---------~~~~~~~~~~d~~~  112 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKEN---------TAANISYRLLDGLV  112 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHS---------CCTTEEEEECCTTC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhC---------cccCceEEECcccc
Confidence            357899999999999999999976  6999999999999998875         22589999998765

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.01  E-value=1.8e-10  Score=88.01  Aligned_cols=59  Identities=14%  Similarity=0.324  Sum_probs=50.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..++...  .+|+|+|+|+.+++.|+++...        .++++++.+|+.+..
T Consensus        52 ~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~  110 (216)
T 3ofk_A           52 VSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKR--------WSHISWAATDILQFS  110 (216)
T ss_dssp             EEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTT--------CSSEEEEECCTTTCC
T ss_pred             CCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhccc--------CCCeEEEEcchhhCC
Confidence            5799999999999999999885  5799999999999999988643        248999999987653

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.01  E-value=2.6e-10  Score=92.73  Aligned_cols=61  Identities=25%  Similarity=0.463  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..++..  ..+|+|||+++.+++.|+++.+..      +.+|++++.+|+...
T Consensus        42 ~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~------~~~~v~~~~~D~~~~  102 (299)
T 2h1r_A           42 SSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYE------GYNNLEVYEGDAIKT  102 (299)
T ss_dssp             TTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHT------TCCCEEC----CCSS
T ss_pred             CcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEECchhhC
Confidence            3679999999999999999987  458999999999999999998754      457899999998764

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.01  E-value=4.6e-10  Score=87.82  Aligned_cols=58  Identities=16%  Similarity=0.336  Sum_probs=50.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|++++ .      +..+++.++.+|+..
T Consensus        40 ~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~------~~~~~~~~~~~d~~~   97 (263)
T 2yqz_A           40 EPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-A------GVDRKVQVVQADARA   97 (263)
T ss_dssp             CCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-T------TSCTTEEEEESCTTS
T ss_pred             CCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-h------ccCCceEEEEccccc
Confidence            579999999999999999987  468999999999999999886 2      245789999998865

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.00  E-value=3.7e-10  Score=91.29  Aligned_cols=64  Identities=20%  Similarity=0.274  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCccchHHHHHh-hhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLS-PMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la-~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+| ...|+.+|+|+|+|+.+++.|++++...     +..++++++.+|+.+.
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~  182 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH-----ALAGQITLHRQDAWKL  182 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS-----TTGGGEEEEECCGGGC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEECchhcC
Confidence            46899999999999999997 5678889999999999999999998654     2223599999998764

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.00  E-value=6e-10  Score=86.02  Aligned_cols=56  Identities=16%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..+++..+  +|+|+|+|+.+++.|+++.         . .++.++.+|+.+.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~---------~-~~v~~~~~d~~~~   98 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRL---------K-DGITYIHSRFEDA   98 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHS---------C-SCEEEEESCGGGC
T ss_pred             CCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhh---------h-CCeEEEEccHHHc
Confidence            56899999999999999999865  6999999999999998774         1 1788888887664

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.00  E-value=1.2e-09  Score=87.39  Aligned_cols=63  Identities=17%  Similarity=0.245  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||+|||+|..+..+|...++ ..|+|+|+++.+++.++++++..      +.+|+.++.+|+...
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~------g~~~v~~~~~D~~~~  146 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM------GVLNTIIINADMRKY  146 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCHHHH
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh------CCCcEEEEeCChHhc
Confidence            4689999999999999999998765 79999999999999999999875      567999999998764

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.00  E-value=7.6e-10  Score=83.63  Aligned_cols=58  Identities=9%  Similarity=0.067  Sum_probs=50.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      + +|||||||+|.++..++..  +.+++|+|+|+.+++.|+++....      +. ++.++.+|+...
T Consensus        31 ~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~------~~-~~~~~~~d~~~~   88 (202)
T 2kw5_A           31 G-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEK------GV-KITTVQSNLADF   88 (202)
T ss_dssp             S-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHH------TC-CEEEECCBTTTB
T ss_pred             C-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhc------CC-ceEEEEcChhhc
Confidence            5 9999999999999999987  468999999999999999998765      33 788888887653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.00  E-value=1.1e-09  Score=87.19  Aligned_cols=63  Identities=17%  Similarity=0.367  Sum_probs=52.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|++++...     +..+++.++.+|+.+.
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~~  126 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANS-----ENLRSKRVLLAGWEQF  126 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTC-----CCCSCEEEEESCGGGC
T ss_pred             CcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhc-----CCCCCeEEEECChhhC
Confidence            467999999999999999997664 59999999999999999998764     2235899999988653

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.00  E-value=2.4e-10  Score=93.13  Aligned_cols=67  Identities=10%  Similarity=0.068  Sum_probs=54.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..+++..+..+|+|||+++.+++.|++++......  ...++++++.+|+.+++
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~~  162 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRS--LADPRATVRVGDGLAFV  162 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG--GGCTTEEEEESCHHHHH
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcc--cCCCcEEEEECcHHHHH
Confidence            57999999999999999998767779999999999999999987432111  12367999999988764

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.00  E-value=1.3e-10  Score=93.85  Aligned_cols=67  Identities=19%  Similarity=0.155  Sum_probs=54.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..+++..+..++++||+++.+++.|++++......  -..++++++.+|+.+++
T Consensus        79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~l  145 (283)
T 2i7c_A           79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG--YEDKRVNVFIEDASKFL  145 (283)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG--GGSTTEEEEESCHHHHH
T ss_pred             CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccc--cCCCcEEEEECChHHHH
Confidence            57999999999999999998877789999999999999999886432000  01368999999988764

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.00  E-value=1e-09  Score=93.89  Aligned_cols=61  Identities=25%  Similarity=0.318  Sum_probs=51.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHH-------HHHHHHHhhcCCCC--CCCeEEEEcchh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYV-------IDRVAALRSQNKGQ--YENIACIRTNAM  121 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a-------~~~~~~~~~~~~~~--~~nv~~i~~d~~  121 (170)
                      ++.+|||||||+|.++..+|..++...|+|||+++.+++.|       +++++..      +  ..||.++.+|..
T Consensus       242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~------Gl~~~nV~~i~gD~~  311 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLY------GMRLNNVEFSLKKSF  311 (433)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHT------TBCCCCEEEEESSCS
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHc------CCCCCceEEEEcCcc
Confidence            46899999999999999999987766899999999999999       6666554      4  478999987543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.00  E-value=1.4e-10  Score=93.46  Aligned_cols=67  Identities=15%  Similarity=0.204  Sum_probs=53.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcC-----CCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQN-----KGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~-----~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..+++. +..++++||+++.+++.|++++ ......     .+..++++++.+|+.+++
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l  147 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFI  147 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHH
T ss_pred             CCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHh
Confidence            579999999999999999988 7779999999999999999987 320000     001367999999987654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.00  E-value=3.6e-10  Score=88.02  Aligned_cols=61  Identities=10%  Similarity=-0.011  Sum_probs=50.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++... ...|+|+|+|+.+++.|+++....      +..++.++.+|+...
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~  140 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEE------GKRVRNYFCCGLQDF  140 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGG------GGGEEEEEECCGGGC
T ss_pred             CCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhc------CCceEEEEEcChhhc
Confidence            5799999999999999999876 458999999999999999887553      234688888887653

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.99  E-value=7.2e-10  Score=97.45  Aligned_cols=61  Identities=11%  Similarity=0.172  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||.|.++..||+.  ++.|+|||+++.+|+.|+..+.+.      +..+|.+.++++.+.
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~------~~~~~~~~~~~~~~~  126 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEEN------PDFAAEFRVGRIEEV  126 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTS------TTSEEEEEECCHHHH
T ss_pred             CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhc------CCCceEEEECCHHHH
Confidence            3569999999999999999998  578999999999999999987663      445799999998765

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.99  E-value=2.8e-10  Score=95.73  Aligned_cols=61  Identities=20%  Similarity=0.350  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|+++++..      +. +++++.+|+.+..
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~------~~-~v~~~~~D~~~~~  293 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEAN------AL-KAQALHSDVDEAL  293 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHT------TC-CCEEEECSTTTTS
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHc------CC-CeEEEEcchhhcc
Confidence            4679999999999999999987  468999999999999999998774      33 4889999987654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.99  E-value=4e-10  Score=88.12  Aligned_cols=56  Identities=20%  Similarity=0.316  Sum_probs=48.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++..+|..+++|+|+|+.+++.|+++.           +++.++.+|+..
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----------~~~~~~~~d~~~   89 (259)
T 2p35_A           34 VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----------PNTNFGKADLAT   89 (259)
T ss_dssp             CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----------TTSEEEECCTTT
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------CCcEEEECChhh
Confidence            57999999999999999999988889999999999999998761           467777777765

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.99  E-value=8.5e-10  Score=86.28  Aligned_cols=57  Identities=12%  Similarity=0.263  Sum_probs=49.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..+++..+. +|+|+|+|+.+++.|+++..         ..++.++.+|+..
T Consensus        45 ~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~  101 (253)
T 3g5l_A           45 QKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT---------SPVVCYEQKAIED  101 (253)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC---------CTTEEEEECCGGG
T ss_pred             CCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc---------cCCeEEEEcchhh
Confidence            689999999999999999998653 89999999999999988752         3578999988875

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.99  E-value=8.9e-10  Score=87.52  Aligned_cols=66  Identities=15%  Similarity=0.206  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||+|||+|.++..++.. .|..+|+|+|+++++++.|+++++...   +...+|+.++.+|+.+.
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---g~~~~~v~~~~~d~~~~  165 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY---GQPPDNWRLVVSDLADS  165 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH---TSCCTTEEEECSCGGGC
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc---CCCCCcEEEEECchHhc
Confidence            4689999999999999999985 467799999999999999999986520   00146899999998764

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.98  E-value=8.2e-10  Score=87.24  Aligned_cols=58  Identities=14%  Similarity=0.370  Sum_probs=51.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++...  .+|+|||+|+.+++.++++...        .+|++++++|+.+.
T Consensus        31 ~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~--------~~~v~~~~~D~~~~   88 (244)
T 1qam_A           31 HDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD--------HDNFQVLNKDILQF   88 (244)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT--------CCSEEEECCCGGGC
T ss_pred             CCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc--------CCCeEEEEChHHhC
Confidence            5799999999999999999985  6899999999999999888632        36899999999874

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.98  E-value=1.8e-09  Score=84.21  Aligned_cols=59  Identities=14%  Similarity=0.272  Sum_probs=50.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..+++.  +.+|+|+|+|+.+++.|+++....      + .++.++.+|+...
T Consensus        42 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~------~-~~v~~~~~d~~~~  100 (252)
T 1wzn_A           42 VRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKER------N-LKIEFLQGDVLEI  100 (252)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------T-CCCEEEESCGGGC
T ss_pred             CCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhc------C-CceEEEECChhhc
Confidence            579999999999999999987  568999999999999999998764      3 3688888888753

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.98  E-value=8.3e-10  Score=91.49  Aligned_cols=61  Identities=25%  Similarity=0.382  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++. +..+|+|||+| ++++.|+++++..      +.. +|+++.+|+.+.
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~------~~~~~v~~~~~d~~~~  127 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKAN------KLDHVVTIIKGKVEEV  127 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHT------TCTTTEEEEESCTTTC
T ss_pred             CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHc------CCCCcEEEEECcHHHc
Confidence            4689999999999999999987 55699999999 5999999998775      444 499999998764

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.98  E-value=8.8e-10  Score=85.08  Aligned_cols=58  Identities=19%  Similarity=0.324  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..++...  .+|+|+|+++.+++.|+++....      +  ++.++.+|+..
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~------~--~v~~~~~d~~~  127 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYY------N--NIKLILGDGTL  127 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTC------S--SEEEEESCGGG
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhc------C--CeEEEECCccc
Confidence            36799999999999999999985  68999999999999999987543      2  89999999876

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.98  E-value=4.5e-10  Score=90.91  Aligned_cols=65  Identities=9%  Similarity=0.194  Sum_probs=56.2

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhc
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYL  124 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l  124 (170)
                      ..++.+|||+|||+|.+++.+|+.. ..+|+++|+++.+++.+++|++..      ++ +++.++++|+.++.
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N------~v~~~v~~~~~D~~~~~  188 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLN------KVEDRMSAYNMDNRDFP  188 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHT------TCTTTEEEECSCTTTCC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEeCcHHHhc
Confidence            3458999999999999999999874 468999999999999999999875      44 45999999998764

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.98  E-value=4.5e-10  Score=85.11  Aligned_cols=59  Identities=14%  Similarity=0.058  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+++..+. +++|+|+|+.+++.|+++...        .+++.++.+|+..
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~--------~~~i~~~~~d~~~  100 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH--------VPQLRWETMDVRK  100 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT--------CTTCEEEECCTTS
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc--------CCCcEEEEcchhc
Confidence            3679999999999999999988553 799999999999999988632        3578898888875

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.97  E-value=1.8e-09  Score=89.69  Aligned_cols=62  Identities=13%  Similarity=0.124  Sum_probs=53.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++...     +..++|+++.+|+.+.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~  241 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGL-----SGSERIHGHGANLLDR  241 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTC-----TTGGGEEEEECCCCSS
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhc-----CcccceEEEEcccccc
Confidence            57999999999999999999999999999999 99999999987653     1225799999998763

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.97  E-value=1.6e-09  Score=87.76  Aligned_cols=63  Identities=14%  Similarity=0.330  Sum_probs=53.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...     +..+++.++.+|+.+.
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~  152 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASI-----DTNRSRQVLLQGWEDF  152 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTS-----CCSSCEEEEESCGGGC
T ss_pred             CcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEECChHHC
Confidence            46899999999999999999886 468999999999999999998764     2224699999988653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.97  E-value=8.9e-10  Score=92.02  Aligned_cols=63  Identities=17%  Similarity=0.208  Sum_probs=56.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +.+||||| |+|.++..++...+..+|+|+|+++.+++.|+++++..      ++.||+++.+|+.+.++
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~------g~~~v~~~~~D~~~~l~  235 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI------GYEDIEIFTFDLRKPLP  235 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH------TCCCEEEECCCTTSCCC
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCEEEEEChhhhhch
Confidence            57999999 99999999999877679999999999999999999876      55689999999987443

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.97  E-value=3.3e-10  Score=89.60  Aligned_cols=59  Identities=17%  Similarity=0.309  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHH------HHHHHHHHHHHHhhcCCCCC-CCeEEEEcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVK------VSDYVIDRVAALRSQNKGQY-ENIACIRTN  119 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~------~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d  119 (170)
                      ++.+|||||||+|.++..++..+ |..+|+|+|+|+.      +++.|++++...      +. +++.++.+|
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~------~~~~~v~~~~~d  109 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG------PLGDRLTVHFNT  109 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS------TTGGGEEEECSC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc------CCCCceEEEECC
Confidence            36899999999999999999986 6679999999997      999999998653      33 579999887

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.97  E-value=1.7e-10  Score=94.78  Aligned_cols=67  Identities=15%  Similarity=0.145  Sum_probs=54.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ..+|||||||+|.++..+++..+..+|++||+++.+++.|++++......  -..++++++.+|+.+++
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~--~~~~rv~~~~~D~~~~l  175 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCG--FSHPKLDLFCGDGFEFL  175 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGG--GGCTTEEEECSCHHHHH
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccc--cCCCCEEEEEChHHHHH
Confidence            57999999999999999998877789999999999999999986432000  01367999999988765

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.97  E-value=2.9e-09  Score=81.96  Aligned_cols=63  Identities=16%  Similarity=0.233  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCC----CCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQ----YENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~----~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+++.. +..+|+|+|+++.+++.|++++...     +.    .+++.++.+|+..
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~v~~~~~d~~~  144 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKD-----DPTLLSSGRVQLVVGDGRM  144 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH-----CTHHHHTSSEEEEESCGGG
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh-----cccccCCCcEEEEECCccc
Confidence            46899999999999999999885 5569999999999999999998764     11    4689999999874

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.96  E-value=2.5e-10  Score=91.14  Aligned_cols=64  Identities=16%  Similarity=0.205  Sum_probs=47.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.|++.|++++...+..  ....++.+..+|+..
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~d~~~  120 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKE--PAFDKWVIEEANWLT  120 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTS--HHHHTCEEEECCGGG
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccc--cccceeeEeecChhh
Confidence            3579999999999999999988  348999999999999999886432100  011345565555543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.96  E-value=1.9e-09  Score=88.99  Aligned_cols=62  Identities=13%  Similarity=0.124  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC--CeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE--NIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~i~~d~~~~l  124 (170)
                      ++.+|||+|||+|.+++.+|...  ..|+|||+|+.+++.|++|++..      +++  ++.++++|+.+++
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~------gl~~~~v~~i~~D~~~~l  216 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLA------GLEQAPIRWICEDAMKFI  216 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHH------TCTTSCEEEECSCHHHHH
T ss_pred             CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHc------CCCccceEEEECcHHHHH
Confidence            35799999999999999999863  48999999999999999999876      455  4999999998764

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.96  E-value=1.2e-09  Score=88.42  Aligned_cols=59  Identities=15%  Similarity=0.263  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCC--CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPS--TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~--~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++..+.  .+|+|||+++.|++.++++.  .        +|++++++|+.+.
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~--------~~v~~i~~D~~~~  102 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G--------ELLELHAGDALTF  102 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G--------GGEEEEESCGGGC
T ss_pred             CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C--------CCcEEEECChhcC
Confidence            3689999999999999999998542  34999999999999999883  2        4799999999874

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.95  E-value=5.6e-10  Score=86.50  Aligned_cols=61  Identities=15%  Similarity=0.277  Sum_probs=50.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|+++....     +...++.++.+|+...
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~  127 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSS-----PKAEYFSFVKEDVFTW  127 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTS-----GGGGGEEEECCCTTTC
T ss_pred             CCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhcc-----CCCcceEEEECchhcC
Confidence            359999999999999999874  568999999999999999987542     1235799999988764

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.95  E-value=1e-09  Score=90.50  Aligned_cols=61  Identities=13%  Similarity=0.148  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l  124 (170)
                      ++.+|||+|||+|.+++. |+  +..+|+|+|+|+.+++.|++|++..      ++ +++.++++|+.+++
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n------~l~~~v~~~~~D~~~~~  256 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLN------KLEHKIIPILSDVREVD  256 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEESCGGGCC
T ss_pred             CCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEECChHHhc
Confidence            468999999999999999 87  3678999999999999999999875      44 58999999998765

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.94  E-value=9.5e-10  Score=84.37  Aligned_cols=64  Identities=17%  Similarity=0.246  Sum_probs=50.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++..  +.+|+|+|+++.+++.|++++....... ....++.++.+|+..
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~d~~~   94 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQ-KTGGKAEFKVENASS   94 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCS-SSSCEEEEEECCTTS
T ss_pred             CCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCcc-ccCcceEEEEecccc
Confidence            589999999999999999988  5689999999999999998875430000 001368888888765

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.94  E-value=1.4e-09  Score=84.20  Aligned_cols=63  Identities=17%  Similarity=0.220  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCC------CCeEEEEECCHHHHHHHHHHHHHHhhcCCCC-----CCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFP------STLILGLEIRVKVSDYVIDRVAALRSQNKGQ-----YENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p------~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~-----~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++..+      ..+|+|+|+++++++.|++++...      +     .+|+.++.+|+...
T Consensus        84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~v~~~~~d~~~~  157 (227)
T 1r18_A           84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTD------DRSMLDSGQLLIVEGDGRKG  157 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHH------HHHHHHHTSEEEEESCGGGC
T ss_pred             CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhc------CccccCCCceEEEECCcccC
Confidence            467999999999999999998754      258999999999999999998764      2     46899999998763

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.94  E-value=1.1e-09  Score=84.75  Aligned_cols=58  Identities=24%  Similarity=0.314  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..++..  +.+|+|+|+++.+++.|+++.         ...++.++.+|+...
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~~~d~~~~  110 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG---------EGPDLSFIKGDLSSL  110 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT---------CBTTEEEEECBTTBC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc---------ccCCceEEEcchhcC
Confidence            3679999999999999999988  568999999999999998763         236789998888753

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.93  E-value=1.6e-09  Score=90.96  Aligned_cols=64  Identities=6%  Similarity=0.048  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC--CeEEEEcchhhhcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE--NIACIRTNAMKYLP  125 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~i~~d~~~~l~  125 (170)
                      ++.+|||+|||+|.+++.+|... ...|+|||+|+.+++.|++|++..      +++  |++++++|+.++++
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n------~~~~~~v~~~~~D~~~~l~  277 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEAN------HLDMANHQLVVMDVFDYFK  277 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHT------TCCCTTEEEEESCHHHHHH
T ss_pred             CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHc------CCCccceEEEECCHHHHHH
Confidence            46899999999999999999863 348999999999999999999774      555  89999999987653

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.93  E-value=8.3e-09  Score=80.15  Aligned_cols=62  Identities=16%  Similarity=0.235  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l  124 (170)
                      ++.+|||+|||+|.++..+++.  ..+++|+|+++.+++.|+++.+..      ++ +++.++.+|+.+..
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~~~  153 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKF------NLGKNVKFFNVDFKDAE  153 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHT------TCCTTEEEECSCTTTSC
T ss_pred             CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHc------CCCCcEEEEEcChhhcc
Confidence            4689999999999999999998  568999999999999999998765      44 68999999887644

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.93  E-value=5.6e-10  Score=94.79  Aligned_cols=77  Identities=13%  Similarity=0.181  Sum_probs=61.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      +.+|||+|||+|..++.+|+.  ..+|+|||+|+.+++.|++|++..    .++++|++++++|+.++++. +..+.+|.
T Consensus        94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~----~~gl~~i~~i~~Da~~~L~~-~~~~~fDv  166 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLL----LNEGKDVNILTGDFKEYLPL-IKTFHPDY  166 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHH----SCTTCEEEEEESCGGGSHHH-HHHHCCSE
T ss_pred             CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHh----ccCCCcEEEEECcHHHhhhh-ccCCCceE
Confidence            589999999999999999987  468999999999999999998763    01347899999999986542 12346777


Q ss_pred             hHhh
Q psy13087        136 CFAN  139 (170)
Q Consensus       136 i~~~  139 (170)
                      ||..
T Consensus       167 V~lD  170 (410)
T 3ll7_A          167 IYVD  170 (410)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7763

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.93  E-value=6.4e-10  Score=82.86  Aligned_cols=50  Identities=10%  Similarity=0.147  Sum_probs=43.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..+++..   +|+|+|+|+.|++.       .        +++.++++|+.+.
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-------~--------~~~~~~~~d~~~~   73 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-------H--------RGGNLVRADLLCS   73 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-------C--------SSSCEEECSTTTT
T ss_pred             CCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-------c--------cCCeEEECChhhh
Confidence            5799999999999999999985   89999999999886       1        4688888988763

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.93  E-value=6.7e-09  Score=86.35  Aligned_cols=64  Identities=20%  Similarity=0.282  Sum_probs=55.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++...     +..++|+++.+|+...++
T Consensus       203 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~l~~~v~~~~~d~~~~~p  266 (369)
T 3gwz_A          203 AATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGR-----GLADRCEILPGDFFETIP  266 (369)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT-----TCTTTEEEEECCTTTCCC
T ss_pred             CcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhc-----CcCCceEEeccCCCCCCC
Confidence            57999999999999999999999999999999 99999999998764     233679999999875444

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.93  E-value=1.8e-09  Score=87.19  Aligned_cols=61  Identities=16%  Similarity=0.218  Sum_probs=51.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++...  .+|+|||+|+.+++.++++....     +..++++++.+|+.+.
T Consensus        29 ~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~v~~~~~D~~~~   89 (285)
T 1zq9_A           29 TDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGT-----PVASKLQVLVGDVLKT   89 (285)
T ss_dssp             TCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTS-----TTGGGEEEEESCTTTS
T ss_pred             CCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhc-----CCCCceEEEEcceecc
Confidence            5799999999999999999984  57999999999999999987543     1125899999998763

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.93  E-value=4.7e-09  Score=85.71  Aligned_cols=64  Identities=23%  Similarity=0.212  Sum_probs=55.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++...     +..++|+++.+|+.+.++
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~p  233 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDT-----GLSGRAQVVVGSFFDPLP  233 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT-----TCTTTEEEEECCTTSCCC
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhc-----CcCcCeEEecCCCCCCCC
Confidence            47999999999999999999999999999999 99999999998764     223679999999864443

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.92  E-value=2.6e-10  Score=94.10  Aligned_cols=61  Identities=21%  Similarity=0.247  Sum_probs=52.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..+++..|..+|+|+|+|+.+++.|++++...      +. +++++.+|+...
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~------~~-~~~~~~~d~~~~  257 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN------GV-EGEVFASNVFSE  257 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT------TC-CCEEEECSTTTT
T ss_pred             CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh------CC-CCEEEEcccccc
Confidence            56899999999999999999988889999999999999999998764      33 367778887654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.92  E-value=2.5e-09  Score=80.92  Aligned_cols=55  Identities=11%  Similarity=0.155  Sum_probs=47.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||+|||+|.++..++.. +...|+|+|+++.+++.|++++           .++.++.+|+.+
T Consensus        52 ~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~-----------~~~~~~~~d~~~  106 (200)
T 1ne2_A           52 GRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNC-----------GGVNFMVADVSE  106 (200)
T ss_dssp             TSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCGGG
T ss_pred             CCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhc-----------CCCEEEECcHHH
Confidence            579999999999999999987 4457999999999999998874           268889998876

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.92  E-value=3.3e-09  Score=87.62  Aligned_cols=61  Identities=21%  Similarity=0.317  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++. +..+|+|+|+++ +++.|+++++..      ++ +++.++.+|+.+.
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~------~~~~~i~~~~~d~~~~  125 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLN------KLEDTITLIKGKIEEV  125 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHT------TCTTTEEEEESCTTTS
T ss_pred             CCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHc------CCCCcEEEEEeeHHHh
Confidence            4689999999999999999987 445899999996 999999998764      44 6899999998753

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.92  E-value=9.1e-10  Score=83.27  Aligned_cols=55  Identities=18%  Similarity=0.241  Sum_probs=46.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++..  +.+++|+|+|+.+++.|+++.           +++.++.+|+.+.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~   96 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH-----------PSVTFHHGTITDL   96 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC-----------TTSEEECCCGGGG
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC-----------CCCeEEeCccccc
Confidence            478999999999999999988  457999999999999998762           4688888887653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.92  E-value=2.7e-09  Score=90.95  Aligned_cols=62  Identities=10%  Similarity=0.044  Sum_probs=54.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ++.+|||+|||+|.++..+|+.  ...|+|+|+|+++++.|+++++..      +++ +.++.+|+.+.++
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~n------gl~-v~~~~~d~~~~~~  351 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEIN------NVD-AEFEVASDREVSV  351 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH------TCC-EEEEECCTTTCCC
T ss_pred             CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHc------CCc-EEEEECChHHcCc
Confidence            4679999999999999999987  458999999999999999998775      556 9999999987654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.92  E-value=2.3e-09  Score=86.40  Aligned_cols=57  Identities=16%  Similarity=0.224  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++ +|||||||+|.++..+++..  .+|+|||+++.+++.++++..         ..|++++++|+.+.
T Consensus        47 ~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~---------~~~v~vi~~D~l~~  103 (271)
T 3fut_A           47 TG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLS---------GLPVRLVFQDALLY  103 (271)
T ss_dssp             CS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTT---------TSSEEEEESCGGGS
T ss_pred             CC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcC---------CCCEEEEECChhhC
Confidence            36 89999999999999999984  579999999999999988752         25899999999864

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.91  E-value=2.4e-09  Score=89.27  Aligned_cols=62  Identities=24%  Similarity=0.370  Sum_probs=54.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +.+|||+|||+|.+++.+|+..  ..|+|||+++++++.|++|++..      +++|++++.+|+.+.++
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~n------g~~~v~~~~~d~~~~~~  275 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAAN------HIDNVQIIRMAAEEFTQ  275 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHT------TCCSEEEECCCSHHHHH
T ss_pred             CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHc------CCCceEEEECCHHHHHH
Confidence            4689999999999999999863  57999999999999999998774      66899999999987653

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.91  E-value=1.1e-09  Score=85.45  Aligned_cols=59  Identities=15%  Similarity=0.052  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..++... ...|+|+|+|+.+++.|+++...        ..++.++.+|+..
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~  151 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMET  151 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCGGG
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEccHHH
Confidence            36899999999999999999886 45799999999999999988643        2578888888865

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.91  E-value=1.7e-09  Score=86.96  Aligned_cols=60  Identities=13%  Similarity=0.218  Sum_probs=51.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC---CCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY---ENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~---~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|+++....      +.   .++.++.+|+...
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~~~v~~~~~d~~~~  145 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEA------PADVRDRCTLVQGDMSAF  145 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTS------CHHHHTTEEEEECBTTBC
T ss_pred             CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhc------ccccccceEEEeCchhcC
Confidence            358999999999999999988  467999999999999999998653      22   5799999988763

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.91  E-value=1.6e-09  Score=88.27  Aligned_cols=46  Identities=15%  Similarity=0.077  Sum_probs=38.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      +.+|||||||+|..+..++... ..+|+|||+|+.|++.|+++....
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~   94 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKL   94 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhc
Confidence            5799999999998777666543 458999999999999999987654

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.91  E-value=8.1e-10  Score=88.30  Aligned_cols=74  Identities=14%  Similarity=0.098  Sum_probs=57.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCH-------HHHHHHHHHHHHHhhcCCCCCCC-eEEEEcchhhhccCC
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRV-------KVSDYVIDRVAALRSQNKGQYEN-IACIRTNAMKYLPNY  127 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~-------~~i~~a~~~~~~~~~~~~~~~~n-v~~i~~d~~~~l~~~  127 (170)
                      +.+|||+|||+|.+++.+|..  +.+|+|+|+++       ++++.|+++++..      ++.| |+++++|+.++++. 
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~------~~~~ri~~~~~d~~~~l~~-  154 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQ------DTAARINLHFGNAAEQMPA-  154 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHH------HHHTTEEEEESCHHHHHHH-
T ss_pred             cCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhh------CCccCeEEEECCHHHHHHh-
Confidence            579999999999999999987  46899999999       9999998887654      3334 99999999886542 


Q ss_pred             Cch--hhhhhhHh
Q psy13087        128 FRK--AQVRRCFA  138 (170)
Q Consensus       128 f~~--~~l~~i~~  138 (170)
                      ++.  +++|.|++
T Consensus       155 ~~~~~~~fD~V~~  167 (258)
T 2r6z_A          155 LVKTQGKPDIVYL  167 (258)
T ss_dssp             HHHHHCCCSEEEE
T ss_pred             hhccCCCccEEEE
Confidence            112  34555555

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.91  E-value=4.7e-09  Score=81.09  Aligned_cols=57  Identities=12%  Similarity=0.298  Sum_probs=49.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..+++.   .+++|+|+|+.+++.|+++....      + .++.++.+|+..
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~------~-~~~~~~~~d~~~   90 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMET------N-RHVDFWVQDMRE   90 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHT------T-CCCEEEECCGGG
T ss_pred             CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhc------C-CceEEEEcChhh
Confidence            579999999999999999987   58999999999999999998664      2 468888888765

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.90  E-value=3.7e-09  Score=84.06  Aligned_cols=62  Identities=16%  Similarity=0.212  Sum_probs=51.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..++.. +..+++|+|+|+.+++.|+++....     +...++.++.+|+..
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~  125 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNM-----KRRFKVFFRAQDSYG  125 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTS-----CCSSEEEEEESCTTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhc-----CCCccEEEEECCccc
Confidence            3689999999999999998887 4458999999999999999988653     122468899888875

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.90  E-value=5.6e-09  Score=86.31  Aligned_cols=65  Identities=23%  Similarity=0.308  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ++.+|||||||+|.++..+++.+|+.+++|+|+ +.+++.|++++...     +..++|+++.+|+.+.++
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~  246 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA-----GLADRVTVAEGDFFKPLP  246 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT-----TCTTTEEEEECCTTSCCS
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhc-----CCCCceEEEeCCCCCcCC
Confidence            367999999999999999999999899999999 99999999998764     222479999999865443

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.90  E-value=1.9e-09  Score=81.56  Aligned_cols=59  Identities=12%  Similarity=0.007  Sum_probs=46.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++.. ++.+++|+|+|+.+++.|++++...      + .++.++.+|+..
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------~-~~~~~~~~d~~~   82 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSREN------N-FKLNISKGDIRK   82 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHH------T-CCCCEEECCTTS
T ss_pred             CCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhc------C-CceEEEECchhh
Confidence            579999999999985444433 3568999999999999999998764      2 467788887764

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.89  E-value=6e-10  Score=88.05  Aligned_cols=53  Identities=17%  Similarity=0.302  Sum_probs=45.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++.  ++.+|+|+|+|+.+++.|+++            .|+.++.+|+.+
T Consensus        35 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~------------~~~~~~~~d~~~   87 (261)
T 3ege_A           35 GSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVH------------PQVEWFTGYAEN   87 (261)
T ss_dssp             TCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCC------------TTEEEECCCTTS
T ss_pred             CCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhc------------cCCEEEECchhh
Confidence            68999999999999999997  567999999999998876543            278888888865

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.89  E-value=4.3e-09  Score=86.20  Aligned_cols=79  Identities=11%  Similarity=0.091  Sum_probs=63.1

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQ  132 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~  132 (170)
                      .++.+|||+|||+|..+..+|... +...|+|+|+++.+++.++++++..      ++.||+++.+|+.......-....
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~------g~~~v~~~~~D~~~~~~~~~~~~~  174 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA------GVSCCELAEEDFLAVSPSDPRYHE  174 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCGGGSCTTCGGGTT
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCChHhcCccccccCC
Confidence            457899999999999999999874 4579999999999999999999886      668999999999875432111134


Q ss_pred             hhhhHh
Q psy13087        133 VRRCFA  138 (170)
Q Consensus       133 l~~i~~  138 (170)
                      +|.|+.
T Consensus       175 fD~Vl~  180 (309)
T 2b9e_A          175 VHYILL  180 (309)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence            666665

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.89  E-value=2e-09  Score=85.04  Aligned_cols=57  Identities=18%  Similarity=0.365  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..++...++.+|+|+|+|+.+++.|+++.           .++.++.+|+..
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~  141 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----------PQVTFCVASSHR  141 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEcchhh
Confidence            468999999999999999999887789999999999999987752           467888888764

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.88  E-value=2.1e-09  Score=84.56  Aligned_cols=54  Identities=22%  Similarity=0.324  Sum_probs=45.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++...  .+|+|+|+|+.+++.|+++.           .++.++.+|+..
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~  104 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRN-----------PDAVLHHGDMRD  104 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTT
T ss_pred             CCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhC-----------CCCEEEECChHH
Confidence            5799999999999999999884  47999999999999998763           367777777655

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.87  E-value=4.2e-09  Score=88.50  Aligned_cols=64  Identities=13%  Similarity=0.122  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-C-CeEEEEcchhhhcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-E-NIACIRTNAMKYLP  125 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~-nv~~i~~d~~~~l~  125 (170)
                      ++.+|||+|||+|.+++.+|... ...|+|+|+|+.+++.|++|++..      ++ + |++++.+|+.+.++
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~n------gl~~~~v~~~~~D~~~~~~  285 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELN------KLDLSKAEFVRDDVFKLLR  285 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT------TCCGGGEEEEESCHHHHHH
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHc------CCCccceEEEECCHHHHHH
Confidence            46899999999999999999874 358999999999999999999774      55 4 89999999987653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.87  E-value=1.7e-09  Score=82.66  Aligned_cols=55  Identities=13%  Similarity=0.220  Sum_probs=46.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++..  +.+++|+|+++.+++.|+++..          .++.++.+|+.+
T Consensus        46 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~----------~~~~~~~~d~~~  100 (220)
T 3hnr_A           46 FGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP----------KEFSITEGDFLS  100 (220)
T ss_dssp             CSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC----------TTCCEESCCSSS
T ss_pred             CCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC----------CceEEEeCChhh
Confidence            579999999999999999987  5689999999999999988742          467777777655

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.87  E-value=4.9e-09  Score=88.14  Aligned_cols=62  Identities=15%  Similarity=0.143  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++++|||||||+|.+++.+|+.. ..+|+|||.|+ +++.|+++++..     +..++|+++++|+.+.
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~-~~~~a~~~~~~n-----~~~~~i~~i~~~~~~~  144 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASA-IWQQAREVVRFN-----GLEDRVHVLPGPVETV  144 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-THHHHHHHHHHT-----TCTTTEEEEESCTTTC
T ss_pred             CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChH-HHHHHHHHHHHc-----CCCceEEEEeeeeeee
Confidence            46899999999999999888764 35899999996 889999888774     2235699999988764

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.87  E-value=2.8e-09  Score=89.20  Aligned_cols=62  Identities=15%  Similarity=0.127  Sum_probs=55.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +.+|||+|||+|.+++.+|..  ..+|+|+|+|+.+++.|+++++..      +++|+.++.+|+.+.++
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n------~~~~~~~~~~d~~~~~~  271 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLN------GLGNVRVLEANAFDLLR  271 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHT------TCTTEEEEESCHHHHHH
T ss_pred             CCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHc------CCCCceEEECCHHHHHH
Confidence            579999999999999999988  468999999999999999998874      67789999999987643

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.87  E-value=5.5e-09  Score=95.25  Aligned_cols=69  Identities=19%  Similarity=0.281  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++.. +..+|+|||+|+.|++.|++++.........+..+|.++++|+.+.
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL  790 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF  790 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC
Confidence            36899999999999999999987 4569999999999999999987653111112456899999998763

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.87  E-value=6.3e-09  Score=85.90  Aligned_cols=61  Identities=21%  Similarity=0.256  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+++.+|+.+++|+|+ +.+++.|+++++..      +.+ +++++.+|+.+
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~  251 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK------GVADRMRGIAVDIYK  251 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT------TCTTTEEEEECCTTT
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhc------CCCCCEEEEeCcccc
Confidence            367999999999999999999999899999999 99999999998764      333 59999999875

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.87  E-value=5.3e-09  Score=80.67  Aligned_cols=58  Identities=12%  Similarity=0.214  Sum_probs=49.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++..  +.+++|+|+|+.+++.|+++....      +. ++.++.+|+..
T Consensus        38 ~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~------~~-~~~~~~~d~~~   95 (246)
T 1y8c_A           38 FDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQ------GL-KPRLACQDISN   95 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHT------TC-CCEEECCCGGG
T ss_pred             CCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhc------CC-CeEEEeccccc
Confidence            579999999999999999988  457999999999999999998664      22 67888777765

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.87  E-value=3.5e-09  Score=81.83  Aligned_cols=58  Identities=22%  Similarity=0.310  Sum_probs=48.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++.... .+++|+|+|+.+++.|+++..         ..++.++.+|+...
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~  101 (243)
T 3bkw_A           44 GLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGP---------DTGITYERADLDKL  101 (243)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSC---------SSSEEEEECCGGGC
T ss_pred             CCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcc---------cCCceEEEcChhhc
Confidence            57999999999999999998732 389999999999999987642         24688888887653

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.86  E-value=4.2e-09  Score=88.43  Aligned_cols=63  Identities=13%  Similarity=0.143  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l  124 (170)
                      ++.+|||+|||+|.+++.+|.. +..+|+|+|+++.+++.|+++++..      +++ |+.++.+|+.+.+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n------~~~~~v~~~~~d~~~~~  280 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLN------GVEDRMKFIVGSAFEEM  280 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHT------TCGGGEEEEESCHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHc------CCCccceEEECCHHHHH
Confidence            4689999999999999999987 3458999999999999999998774      555 8999999988764

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.86  E-value=5.1e-09  Score=84.03  Aligned_cols=58  Identities=17%  Similarity=0.179  Sum_probs=50.5

Q ss_pred             CCeEEEEcCcc---chHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087         56 KVEFVDVGCGY---GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM  121 (170)
Q Consensus        56 ~~~vLDiGCG~---G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~  121 (170)
                      ..+|||||||+   |.++..+++.+|+.+|+|+|+|+.|++.|++++..        .++++++.+|+.
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--------~~~v~~~~~D~~  138 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--------DPNTAVFTADVR  138 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--------CTTEEEEECCTT
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--------CCCeEEEEeeCC
Confidence            36999999999   99988888888889999999999999999988732        357999999975

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.86  E-value=3.3e-09  Score=90.79  Aligned_cols=78  Identities=13%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQ  132 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~  132 (170)
                      .++.+|||+|||+|..+..++...++ ..|+|+|+++.+++.++++++..      +.+|+.++.+|+....+ .++.+.
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~------g~~~v~~~~~D~~~~~~-~~~~~~  330 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM------GIKIVKPLVKDARKAPE-IIGEEV  330 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT------TCCSEEEECSCTTCCSS-SSCSSC
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc------CCCcEEEEEcChhhcch-hhccCC
Confidence            35689999999999999999998776 79999999999999999999876      66789999999876432 233344


Q ss_pred             hhhhHh
Q psy13087        133 VRRCFA  138 (170)
Q Consensus       133 l~~i~~  138 (170)
                      +|.|+.
T Consensus       331 fD~Vl~  336 (450)
T 2yxl_A          331 ADKVLL  336 (450)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence            555553

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.86  E-value=1.6e-09  Score=86.09  Aligned_cols=57  Identities=23%  Similarity=0.322  Sum_probs=49.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++.. +..+|+|||+++.+++.++++  .        ..|++++++|+.+.
T Consensus        32 ~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~--~--------~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           32 GNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI--G--------DERLEVINEDASKF   88 (249)
T ss_dssp             TCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS--C--------CTTEEEECSCTTTC
T ss_pred             cCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc--c--------CCCeEEEEcchhhC
Confidence            579999999999999999987 446899999999999998766  1        25899999998764

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.85  E-value=7.1e-09  Score=86.71  Aligned_cols=61  Identities=20%  Similarity=0.181  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++.. ..+|+|||+| +|++.|+++++..      ++ ++|+++.+|+.+.
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~  124 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKAN------NLDHIVEVIEGSVEDI  124 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHT------TCTTTEEEEESCGGGC
T ss_pred             CCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHc------CCCCeEEEEECchhhc
Confidence            46899999999999999999873 3489999999 9999999998775      44 4599999998764

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.85  E-value=8.3e-09  Score=85.35  Aligned_cols=60  Identities=20%  Similarity=0.221  Sum_probs=50.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..+++. +..+|+|||+|+ +++.|+++++..      ++ ++|+++.+|+.+.
T Consensus        51 ~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~------~l~~~v~~~~~d~~~~  111 (348)
T 2y1w_A           51 DKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSN------NLTDRIVVIPGKVEEV  111 (348)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHT------TCTTTEEEEESCTTTC
T ss_pred             cCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHc------CCCCcEEEEEcchhhC
Confidence            579999999999999999986 456999999996 889999888764      44 6899999988763

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.85  E-value=4.4e-09  Score=88.80  Aligned_cols=62  Identities=13%  Similarity=0.097  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ++.+|||+|||+|.+++.+|...  ..|+|+|+|+.+++.|++|++..      +++ ..+.++|+.+.++
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~n------g~~-~~~~~~D~~~~l~  275 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRL------GLR-VDIRHGEALPTLR  275 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHH------TCC-CEEEESCHHHHHH
T ss_pred             CCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHh------CCC-CcEEEccHHHHHH
Confidence            37899999999999999999873  45999999999999999999875      444 3566899887764

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.84  E-value=9.4e-09  Score=84.64  Aligned_cols=64  Identities=19%  Similarity=0.266  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||||||+|.++..+++.+|+..++++|+ +.+++.|++++...     +..++++++.+|+.+.+
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~  246 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE-----GLSDRVDVVEGDFFEPL  246 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT-----TCTTTEEEEECCTTSCC
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc-----CCCCceEEEeCCCCCCC
Confidence            357999999999999999999999999999999 99999999998764     22248999999987544

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.84  E-value=3.3e-09  Score=80.77  Aligned_cols=41  Identities=24%  Similarity=0.349  Sum_probs=37.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|+++
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~   93 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA   93 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT
T ss_pred             CCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh
Confidence            579999999999999999988  56899999999999999876

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.84  E-value=2.8e-09  Score=89.59  Aligned_cols=69  Identities=10%  Similarity=-0.014  Sum_probs=56.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcC---------CCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQN---------KGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~---------~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+|||+|||+|.+++.+|+..+...|+++|+++++++.+++|++......         ..++.++.++++|+...+
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~  125 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  125 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence            579999999999999999998777789999999999999999997640000         004456999999997764

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.84  E-value=2.1e-09  Score=85.66  Aligned_cols=58  Identities=12%  Similarity=0.127  Sum_probs=47.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++. ++. .+..+|+|||+++.|++.++++...        .+|++++++|+.+.
T Consensus        22 ~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~--------~~~v~~i~~D~~~~   79 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFL--------GPKLTIYQQDAMTF   79 (252)
T ss_dssp             TCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTT--------GGGEEEECSCGGGC
T ss_pred             cCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhcc--------CCceEEEECchhhC
Confidence            5789999999999999 764 3333499999999999999877532        25899999998763

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.84  E-value=3.2e-09  Score=80.80  Aligned_cols=42  Identities=12%  Similarity=0.185  Sum_probs=38.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~   99 (170)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|+++.
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~   85 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL   85 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc
Confidence            579999999999999999987  468999999999999999875

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.83  E-value=2.2e-09  Score=83.46  Aligned_cols=41  Identities=20%  Similarity=0.411  Sum_probs=36.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|+++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~   82 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK   82 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT
T ss_pred             CCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh
Confidence            579999999999999999988  45799999999999988754

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.83  E-value=8.9e-09  Score=83.70  Aligned_cols=61  Identities=13%  Similarity=0.226  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+++.+|+.+++|+|++ .+++.|++++...      ++ ++++++.+|+.+
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~------~~~~~v~~~~~d~~~  226 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ------GVASRYHTIAGSAFE  226 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHH------TCGGGEEEEESCTTT
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhc------CCCcceEEEeccccc
Confidence            4689999999999999999999998999999999 9999999998775      33 469999998875

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.83  E-value=4.7e-09  Score=84.15  Aligned_cols=44  Identities=9%  Similarity=0.089  Sum_probs=39.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVA  100 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~  100 (170)
                      ++.+|||||||+|.++..+|+.  +..|+|||+|+.|++.|++++.
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~   88 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALA   88 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTS
T ss_pred             CcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHH
Confidence            3689999999999999999987  4689999999999999998864

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.82  E-value=1.1e-08  Score=83.92  Aligned_cols=61  Identities=20%  Similarity=0.335  Sum_probs=50.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..+++. +..+|+|+|++ .+++.|+++++..     +..++|+++.+|+.+.
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~   99 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELN-----GFSDKITLLRGKLEDV   99 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHT-----TCTTTEEEEESCTTTS
T ss_pred             CCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHc-----CCCCCEEEEECchhhc
Confidence            579999999999999999986 44589999999 6999999998764     2224699999988753

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.82  E-value=6.5e-09  Score=82.62  Aligned_cols=55  Identities=16%  Similarity=0.268  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..++.  ++.+|+|+|+|+.|++.|+++.           +++.++.+|+..
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~  111 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-----------PHLHFDVADARN  111 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-----------TTSCEEECCTTT
T ss_pred             CCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-----------CCCEEEECChhh
Confidence            367999999999999999998  5679999999999999988763           356666666654

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.82  E-value=8.9e-09  Score=88.98  Aligned_cols=60  Identities=22%  Similarity=0.245  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.+++.+++. +..+|+|+|+|+ +++.|+++++..      ++ ++|+++.+|+.+
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~------gl~~~v~~~~~d~~~  218 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSN------NLTDRIVVIPGKVEE  218 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHT------TCTTTEEEEESCTTT
T ss_pred             CCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHc------CCCCcEEEEECchhh
Confidence            4679999999999999999874 667999999998 999999998775      44 689999999876

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.81  E-value=1.2e-08  Score=82.57  Aligned_cols=67  Identities=16%  Similarity=0.249  Sum_probs=51.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcC-CCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQN-KGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~-~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++.. +..+++|+|+|+.+++.|+++........ .....++.++.+|+...
T Consensus        35 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  102 (313)
T 3bgv_A           35 DITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKE  102 (313)
T ss_dssp             CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTS
T ss_pred             CCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccccc
Confidence            579999999999999999974 56799999999999999999876531000 00234788888888754

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.80  E-value=2e-09  Score=84.49  Aligned_cols=57  Identities=16%  Similarity=0.200  Sum_probs=49.0

Q ss_pred             CCeEEEEcCccchHHHHHhhh----CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPM----FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~----~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|..+..+|+.    .|+.+|+|||+++++++.|+    ..       .+||+++++|+.+.
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~-------~~~v~~~~gD~~~~  142 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SD-------MENITLHQGDCSDL  142 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GG-------CTTEEEEECCSSCS
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----cc-------CCceEEEECcchhH
Confidence            579999999999999999997    67789999999999998876    11       26899999998763

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.79  E-value=2.7e-09  Score=78.42  Aligned_cols=51  Identities=22%  Similarity=0.301  Sum_probs=44.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN  119 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d  119 (170)
                      +.+|||||||+|.++..+++...  +++|+|+++.+++.|+++.           +++.++.+|
T Consensus        18 ~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~-----------~~v~~~~~d   68 (170)
T 3i9f_A           18 KGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKF-----------DSVITLSDP   68 (170)
T ss_dssp             CEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHC-----------TTSEEESSG
T ss_pred             CCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhC-----------CCcEEEeCC
Confidence            57999999999999999999863  8999999999999998871           467777777

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.79  E-value=1e-08  Score=78.94  Aligned_cols=54  Identities=20%  Similarity=0.305  Sum_probs=45.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..+++..+  +++|+|+|+.+++.|+++.           +++.++.+|+..
T Consensus        41 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~-----------~~~~~~~~d~~~   94 (239)
T 3bxo_A           41 ASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL-----------PDATLHQGDMRD   94 (239)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC-----------TTCEEEECCTTT
T ss_pred             CCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC-----------CCCEEEECCHHH
Confidence            57999999999999999999865  7999999999999998763           356666666654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.79  E-value=1.4e-08  Score=75.34  Aligned_cols=54  Identities=20%  Similarity=0.317  Sum_probs=45.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..++..  +.+++|+|+++.+++.|+++.           .++.++.+|+..
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~-----------~~~~~~~~d~~~  100 (195)
T 3cgg_A           47 GAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF-----------PEARWVVGDLSV  100 (195)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTT
T ss_pred             CCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC-----------CCCcEEEccccc
Confidence            679999999999999999987  468999999999999998764           346666666654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.79  E-value=5.6e-09  Score=94.04  Aligned_cols=63  Identities=10%  Similarity=0.071  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC--CeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE--NIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~i~~d~~~~l  124 (170)
                      ++.+|||+|||+|.+++.+|... ..+|++||+|+.+++.|++|++..      +++  +++++++|+.+++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~n------gl~~~~v~~i~~D~~~~l  603 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLN------GLTGRAHRLIQADCLAWL  603 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT------TCCSTTEEEEESCHHHHH
T ss_pred             CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHc------CCCccceEEEecCHHHHH
Confidence            47899999999999999999853 347999999999999999999874      554  7999999998865

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.78  E-value=3.9e-09  Score=84.76  Aligned_cols=45  Identities=7%  Similarity=0.106  Sum_probs=39.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEEC-CHHHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEI-RVKVSDYVIDRVA  100 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDi-s~~~i~~a~~~~~  100 (170)
                      ++.+|||||||+|.+++.+++.. ..+|+|+|+ ++.+++.|+++++
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~  124 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIR  124 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHH
Confidence            36799999999999999999863 348999999 8999999999983

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.77  E-value=5.3e-09  Score=88.35  Aligned_cols=64  Identities=11%  Similarity=-0.002  Sum_probs=56.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC--eEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN--IACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~i~~d~~~~l~  125 (170)
                      +.+|||++||+|.+++.+|...++ ..|+++|+++.+++.+++|++..      ++++  ++++++|+.+++.
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~N------gl~~~~v~v~~~Da~~~l~  119 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLN------NIPEDRYEIHGMEANFFLR  119 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHT------TCCGGGEEEECSCHHHHHH
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHh------CCCCceEEEEeCCHHHHHH
Confidence            579999999999999999997544 58999999999999999999875      6666  9999999988775

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.76  E-value=1.7e-08  Score=86.72  Aligned_cols=64  Identities=14%  Similarity=0.163  Sum_probs=56.8

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      .++.+|||+|||+|..+..+|...++ ..|+|+|+++.+++.+++|++..      +..||.++++|+...
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~------g~~nv~v~~~Da~~l  168 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW------GVSNAIVTNHAPAEL  168 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH------TCSSEEEECCCHHHH
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEeCCHHHh
Confidence            45789999999999999999987653 68999999999999999999987      678999999998764

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.76  E-value=1.7e-08  Score=82.88  Aligned_cols=62  Identities=13%  Similarity=0.104  Sum_probs=54.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++...     +..++|+++.+|+.+.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~  241 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAH-----DLGGRVEFFEKNLLDA  241 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT-----TCGGGEEEEECCTTCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhc-----CCCCceEEEeCCcccC
Confidence            57999999999999999999999999999999 88999999988764     2224699999998764

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.76  E-value=2.1e-08  Score=86.65  Aligned_cols=63  Identities=14%  Similarity=0.153  Sum_probs=56.2

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||+|||+|..+..+|...+ ...|+|+|+++.+++.++++++..      +..||.++++|+...
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~------g~~nv~~~~~D~~~~  180 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC------GISNVALTHFDGRVF  180 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH------TCCSEEEECCCSTTH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCCHHHh
Confidence            578999999999999999999864 468999999999999999999887      667899999998753

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.75  E-value=7.2e-09  Score=81.29  Aligned_cols=46  Identities=20%  Similarity=0.273  Sum_probs=41.6

Q ss_pred             CCeEEEEcCccchHHHHHhhh--CCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPM--FPSTLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~--~p~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      +.+|||+|||+|.+++.++..  .+..+|+|+|+|+.+++.|++++..
T Consensus        52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~   99 (250)
T 1o9g_A           52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLAL   99 (250)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHH
Confidence            579999999999999999988  6677899999999999999988754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.74  E-value=3.4e-09  Score=82.88  Aligned_cols=44  Identities=11%  Similarity=-0.093  Sum_probs=39.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVA  100 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~  100 (170)
                      +.+|||||||+|.++..++...+ .+|+|+|+|+.+++.|++++.
T Consensus        57 ~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~  100 (265)
T 2i62_A           57 GELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLK  100 (265)
T ss_dssp             EEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHT
T ss_pred             CCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHh
Confidence            57999999999999999998754 489999999999999998864

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.74  E-value=2.1e-08  Score=84.40  Aligned_cols=64  Identities=20%  Similarity=0.220  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCC--------------------------------------CeEEEEECCHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPS--------------------------------------TLILGLEIRVKVSDYVI   96 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~--------------------------------------~~v~GvDis~~~i~~a~   96 (170)
                      ++..|||.|||+|.+++++|....+                                      ..|+|+|+++.+++.|+
T Consensus       195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar  274 (385)
T 3ldu_A          195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR  274 (385)
T ss_dssp             TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence            3578999999999999999887432                                      47999999999999999


Q ss_pred             HHHHHHhhcCCCCC-CCeEEEEcchhhhc
Q psy13087         97 DRVAALRSQNKGQY-ENIACIRTNAMKYL  124 (170)
Q Consensus        97 ~~~~~~~~~~~~~~-~nv~~i~~d~~~~l  124 (170)
                      +|++..      ++ ++|++.++|+.+..
T Consensus       275 ~Na~~~------gl~~~i~~~~~D~~~l~  297 (385)
T 3ldu_A          275 ENAEIA------GVDEYIEFNVGDATQFK  297 (385)
T ss_dssp             HHHHHH------TCGGGEEEEECCGGGCC
T ss_pred             HHHHHc------CCCCceEEEECChhhcC
Confidence            999886      44 47999999998754

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.73  E-value=2.6e-08  Score=85.76  Aligned_cols=63  Identities=16%  Similarity=0.185  Sum_probs=55.7

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      .++.+|||+|||+|..+..+|...++ ..|+|+|+|+.+++.+++|++..      +.. |.++++|+...
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~------G~~-v~~~~~Da~~l  163 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW------GAP-LAVTQAPPRAL  163 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH------CCC-CEEECSCHHHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCe-EEEEECCHHHh
Confidence            45789999999999999999988754 68999999999999999999887      666 99999998764

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.73  E-value=2e-08  Score=79.11  Aligned_cols=42  Identities=12%  Similarity=0.159  Sum_probs=38.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~   99 (170)
                      +.+|||||||+|.++..++..  +.+++|+|+|+.+++.|+++.
T Consensus        55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~   96 (260)
T 2avn_A           55 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKG   96 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHT
T ss_pred             CCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhc
Confidence            579999999999999999987  468999999999999998774

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.71  E-value=3e-08  Score=83.70  Aligned_cols=64  Identities=14%  Similarity=0.203  Sum_probs=54.2

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCC--------------------------------------CeEEEEECCHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPS--------------------------------------TLILGLEIRVKVSDYVI   96 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~--------------------------------------~~v~GvDis~~~i~~a~   96 (170)
                      ++..|||.+||+|.+++++|....+                                      ..|+|+|+++.|++.|+
T Consensus       201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar  280 (393)
T 3k0b_A          201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK  280 (393)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence            3578999999999999999986543                                      46999999999999999


Q ss_pred             HHHHHHhhcCCCCCC-CeEEEEcchhhhc
Q psy13087         97 DRVAALRSQNKGQYE-NIACIRTNAMKYL  124 (170)
Q Consensus        97 ~~~~~~~~~~~~~~~-nv~~i~~d~~~~l  124 (170)
                      +|++..      ++. +|+++++|+.+..
T Consensus       281 ~Na~~~------gl~~~I~~~~~D~~~~~  303 (393)
T 3k0b_A          281 QNAVEA------GLGDLITFRQLQVADFQ  303 (393)
T ss_dssp             HHHHHT------TCTTCSEEEECCGGGCC
T ss_pred             HHHHHc------CCCCceEEEECChHhCC
Confidence            999875      444 5999999998753

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.71  E-value=1.6e-08  Score=81.34  Aligned_cols=61  Identities=13%  Similarity=0.224  Sum_probs=52.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ..+|||||||+|-+++.++...|...|+|+||++.+++.+++++..+      +. +.++...|....
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~------g~-~~~~~v~D~~~~  193 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL------NV-PHRTNVADLLED  193 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT------TC-CEEEEECCTTTS
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc------CC-CceEEEeeeccc
Confidence            57999999999999999999889999999999999999999999775      43 367777776643

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.70  E-value=4.3e-08  Score=81.19  Aligned_cols=61  Identities=20%  Similarity=0.189  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ...+|||||||+|.++..+++.+|+.+++..|. +.+++.|+++++..      ..++|+++.+|+.+
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~------~~~rv~~~~gD~~~  239 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ------EEEQIDFQEGDFFK  239 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--------CCSEEEEESCTTT
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc------ccCceeeecCcccc
Confidence            357999999999999999999999999999997 88999998876543      45789999999875

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.70  E-value=1.6e-08  Score=76.80  Aligned_cols=51  Identities=20%  Similarity=0.192  Sum_probs=41.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCC-eEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPST-LILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~-~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..+     +. +++|+|+|+.+++.|+++.           +++.++.+|+..
T Consensus        37 ~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~   88 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----------PEATWVRAWGEA   88 (211)
T ss_dssp             CSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----------TTSEEECCCTTS
T ss_pred             CCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEccccc
Confidence            579999999999999887     34 8999999999999998773           345666665543

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.69  E-value=1.6e-08  Score=80.88  Aligned_cols=79  Identities=18%  Similarity=0.210  Sum_probs=60.1

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcC-CCC-C-CCeEEEEcchhhhccCCCchhhh
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQN-KGQ-Y-ENIACIRTNAMKYLPNYFRKAQV  133 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~-~~~-~-~nv~~i~~d~~~~l~~~f~~~~l  133 (170)
                      .+|||+|||+|..++.+|..  +.+|+|||+++.++..++++++..+.+. -++ + .+++++++|+.++++.+- . .+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~-~-~f  165 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT-P-RP  165 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS-S-CC
T ss_pred             CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCc-c-cC
Confidence            79999999999999999998  4579999999999888888876542210 011 2 479999999998876432 2 46


Q ss_pred             hhhHhh
Q psy13087        134 RRCFAN  139 (170)
Q Consensus       134 ~~i~~~  139 (170)
                      |.||+.
T Consensus       166 DvV~lD  171 (258)
T 2oyr_A          166 QVVYLD  171 (258)
T ss_dssp             SEEEEC
T ss_pred             CEEEEc
Confidence            766663

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.69  E-value=3.9e-08  Score=82.76  Aligned_cols=64  Identities=14%  Similarity=0.214  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCC--------------------------------------CeEEEEECCHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPS--------------------------------------TLILGLEIRVKVSDYVI   96 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~--------------------------------------~~v~GvDis~~~i~~a~   96 (170)
                      ++..+||.+||+|.+++++|....+                                      ..++|+|+++.|++.|+
T Consensus       194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar  273 (384)
T 3ldg_A          194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR  273 (384)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence            3578999999999999999976543                                      46999999999999999


Q ss_pred             HHHHHHhhcCCCCCC-CeEEEEcchhhhc
Q psy13087         97 DRVAALRSQNKGQYE-NIACIRTNAMKYL  124 (170)
Q Consensus        97 ~~~~~~~~~~~~~~~-nv~~i~~d~~~~l  124 (170)
                      +|++..      ++. +|+++++|+.+..
T Consensus       274 ~Na~~~------gl~~~I~~~~~D~~~l~  296 (384)
T 3ldg_A          274 KNAREV------GLEDVVKLKQMRLQDFK  296 (384)
T ss_dssp             HHHHHT------TCTTTEEEEECCGGGCC
T ss_pred             HHHHHc------CCCCceEEEECChHHCC
Confidence            999876      444 5999999998753

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.68  E-value=1.9e-08  Score=81.97  Aligned_cols=62  Identities=23%  Similarity=0.233  Sum_probs=53.4

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      .+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++...     +..++|+++.+|+.+.+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~  230 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL-----LAGERVSLVGGDMLQEV  230 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH-----HHTTSEEEEESCTTTCC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc-----CCCCcEEEecCCCCCCC
Confidence            6999999999999999999999999999999 99999999987654     12257999999886543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.68  E-value=3.9e-08  Score=78.86  Aligned_cols=62  Identities=16%  Similarity=0.270  Sum_probs=44.2

Q ss_pred             CCeEEEEcCccchHHH----HHhhhCCCCeE--EEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEE--EEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLV----TLSPMFPSTLI--LGLEIRVKVSDYVIDRVAALRSQNKGQYENIAC--IRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~----~la~~~p~~~v--~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~--i~~d~~~  122 (170)
                      +.+|||||||+|.++.    .++..+|+..+  +|+|.|++|++.|++++...     .+.+|+.+  ..+++.+
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~-----~~~~~v~~~~~~~~~~~  122 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT-----SNLENVKFAWHKETSSE  122 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC-----SSCTTEEEEEECSCHHH
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhc-----cCCCcceEEEEecchhh
Confidence            5699999999997654    44455577644  99999999999999987542     13456554  3455543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.67  E-value=1.9e-08  Score=75.84  Aligned_cols=51  Identities=18%  Similarity=0.248  Sum_probs=42.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC--CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP--STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p--~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++..++  +.+|+|+|+|+.+                 ..+++.++++|+...
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------------~~~~v~~~~~d~~~~   75 (201)
T 2plw_A           23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------------PIPNVYFIQGEIGKD   75 (201)
T ss_dssp             TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------------CCTTCEEEECCTTTT
T ss_pred             CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------------CCCCceEEEccccch
Confidence            57999999999999999999987  6799999999931                 235788888888653

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.66  E-value=9.3e-09  Score=82.23  Aligned_cols=65  Identities=15%  Similarity=-0.059  Sum_probs=51.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+|||||||+|.++..+++. + .+|+++|+++.+++.|+++.......  -..++++++.+|+.+++
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~--~~~~rv~~~~~D~~~~~  137 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEV--KNNKNFTHAKQLLDLDI  137 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHH--HTCTTEEEESSGGGSCC
T ss_pred             CCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccc--cCCCeEEEEechHHHHH
Confidence            479999999999999999988 7 89999999999999998875321000  02357999999987654

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.65  E-value=8.4e-08  Score=76.23  Aligned_cols=58  Identities=12%  Similarity=0.177  Sum_probs=49.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ..+|||||||.|-++..++   +...|+|+||++.+++.+++++...      + .+.++..+|....
T Consensus       106 p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~------g-~~~~~~v~D~~~~  163 (253)
T 3frh_A          106 PRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK------D-WDFTFALQDVLCA  163 (253)
T ss_dssp             CSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT------T-CEEEEEECCTTTS
T ss_pred             CCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc------C-CCceEEEeecccC
Confidence            4799999999999999887   6789999999999999999997664      3 5678888887754

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.63  E-value=1e-08  Score=80.54  Aligned_cols=42  Identities=17%  Similarity=0.313  Sum_probs=37.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +.+|||||||+|.++..+++. +..+|+|||+|+.|++.|+++
T Consensus        38 g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~   79 (232)
T 3opn_A           38 GKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRS   79 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHT
T ss_pred             CCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHh
Confidence            579999999999999999987 334899999999999987765

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.63  E-value=3.8e-08  Score=81.82  Aligned_cols=57  Identities=16%  Similarity=0.325  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++            .++|+++.+|+.+.+
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~~~  257 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------------FPGVTHVGGDMFKEV  257 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTTCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------------cCCeEEEeCCcCCCC
Confidence            357999999999999999999999999999999 888776532            257999999887533

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.63  E-value=7.6e-10  Score=87.13  Aligned_cols=58  Identities=12%  Similarity=0.311  Sum_probs=49.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++...  .+|+|+|+|+.+++.|++++.        ..++++++++|+.+.
T Consensus        30 ~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~--------~~~~v~~~~~D~~~~   87 (245)
T 1yub_A           30 TDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK--------LNTRVTLIHQDILQF   87 (245)
T ss_dssp             SEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT--------TCSEEEECCSCCTTT
T ss_pred             CCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhc--------cCCceEEEECChhhc
Confidence            5799999999999999999984  689999999999998877653        235799999988764

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.63  E-value=3.6e-08  Score=81.15  Aligned_cols=60  Identities=13%  Similarity=0.263  Sum_probs=51.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCC-----CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPS-----TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~-----~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||+|||+|.+++.+++..+.     .+++|+|+++.+++.|+.++...      +. ++.++++|+..
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~------g~-~~~i~~~D~l~  195 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ------RQ-KMTLLHQDGLA  195 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH------TC-CCEEEESCTTS
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC------CC-CceEEECCCCC
Confidence            479999999999999999988653     68999999999999999998765      33 67888888765

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.62  E-value=3.8e-08  Score=74.85  Aligned_cols=49  Identities=18%  Similarity=0.396  Sum_probs=40.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|.++..+++.  ...|+|||+++..                 ..+++.++++|+.+
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------------~~~~v~~~~~D~~~   73 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------------EIAGVRFIRCDIFK   73 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------------CCTTCEEEECCTTS
T ss_pred             CCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------------cCCCeEEEEccccC
Confidence            3689999999999999999988  5789999999751                 23578888888654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.60  E-value=9.6e-08  Score=81.06  Aligned_cols=62  Identities=13%  Similarity=0.205  Sum_probs=54.3

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      .++.+|||+|||+|..+..++...++..|+|+|+++.+++.++++++..      +. ++.++.+|+..
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~------g~-~~~~~~~D~~~  306 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL------GM-KATVKQGDGRY  306 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT------TC-CCEEEECCTTC
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc------CC-CeEEEeCchhh
Confidence            4578999999999999999999987789999999999999999998875      43 47888888764

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.58  E-value=1.9e-08  Score=79.65  Aligned_cols=45  Identities=11%  Similarity=-0.040  Sum_probs=37.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      +.+|||||||+|.++..++... ..+|+|+|+|+.|++.|+++++.
T Consensus        56 g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~  100 (263)
T 2a14_A           56 GDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKK  100 (263)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhc
Confidence            6799999999999888777653 23799999999999999987643

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.56  E-value=3.9e-08  Score=78.57  Aligned_cols=44  Identities=9%  Similarity=-0.077  Sum_probs=35.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVA  100 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~  100 (170)
                      +.+|||||||+|.+...++.. +..+|+|+|+|+.|++.|+++++
T Consensus        72 ~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           72 GRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             CSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHh
Confidence            579999999999965544443 34689999999999999988653

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.56  E-value=2.7e-08  Score=72.35  Aligned_cols=50  Identities=12%  Similarity=0.191  Sum_probs=41.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||+|||+|.++..+++.+ ++.+++|+|+++ ++.                ..++.++.+|+..
T Consensus        23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----------------~~~~~~~~~d~~~   73 (180)
T 1ej0_A           23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----------------IVGVDFLQGDFRD   73 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----------------CTTEEEEESCTTS
T ss_pred             CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----------------cCcEEEEEccccc
Confidence            5799999999999999999985 667999999999 642                2467888877754

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.54  E-value=8.1e-08  Score=77.56  Aligned_cols=60  Identities=15%  Similarity=0.233  Sum_probs=47.3

Q ss_pred             CeEEEEcCcc--chHHHHHhh-hCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         57 VEFVDVGCGY--GGLLVTLSP-MFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        57 ~~vLDiGCG~--G~~~~~la~-~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      .+|||||||+  +..+..++. ..|+++|++||.|+.|++.|++++...      ...+++++++|+.+
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~------~~~~~~~v~aD~~~  142 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST------PEGRTAYVEADMLD  142 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC------SSSEEEEEECCTTC
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC------CCCcEEEEEecccC
Confidence            6899999997  445555544 578999999999999999998886431      22479999999865

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.54  E-value=5.8e-08  Score=79.94  Aligned_cols=57  Identities=19%  Similarity=0.320  Sum_probs=48.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+|||||||+|.++..+++.+|+.+++|+|+ +.+++.|++            .++++++.+|+.+.++
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~~~p  245 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------------SNNLTYVGGDMFTSIP  245 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------BTTEEEEECCTTTCCC
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------------CCCcEEEeccccCCCC
Confidence            57999999999999999999999999999999 999877643            2469999998865433

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.53  E-value=7.5e-08  Score=79.25  Aligned_cols=62  Identities=21%  Similarity=0.243  Sum_probs=46.2

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +..+|||||||+|.++..+++.+|+.+++++|+ +.++.  +++++..     +..++|+++.+|+.+.+
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~-----~~~~~v~~~~~d~~~~~  245 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAP-----DVAGRWKVVEGDFLREV  245 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCG-----GGTTSEEEEECCTTTCC
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--ccccccc-----CCCCCeEEEecCCCCCC
Confidence            367999999999999999999999999999999 44444  2222111     12357999999986433

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.53  E-value=6.2e-08  Score=80.57  Aligned_cols=57  Identities=16%  Similarity=0.304  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++            .++|+++.+|+.+.+
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~~~  259 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA------------FSGVEHLGGDMFDGV  259 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTTCC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh------------cCCCEEEecCCCCCC
Confidence            357999999999999999999999999999999 888776532            257999998877543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.52  E-value=9.1e-08  Score=71.63  Aligned_cols=35  Identities=14%  Similarity=0.260  Sum_probs=31.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCC---------CeEEEEECCHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPS---------TLILGLEIRVK   90 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~---------~~v~GvDis~~   90 (170)
                      +.+|||||||+|.++..+++..+.         .+|+|+|+++.
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            579999999999999999999764         78999999984

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.50  E-value=7.8e-09  Score=83.36  Aligned_cols=59  Identities=15%  Similarity=0.218  Sum_probs=41.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEE--Ecchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACI--RTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i--~~d~~~  122 (170)
                      ++.+|||||||+|.++..+++.   ..|+|||+++ |+..++++...  .   ... .|+.++  ++|+..
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~--~---~~~~~~v~~~~~~~D~~~  143 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRL--V---ETFGWNLITFKSKVDVTK  143 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCC--C---CCTTGGGEEEECSCCGGG
T ss_pred             CCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhh--h---hhcCCCeEEEeccCcHhh
Confidence            4689999999999999999987   4699999999 54332211000  0   011 178888  888875

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.47  E-value=1.8e-07  Score=71.16  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=37.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~   99 (170)
                      +.+|||||||+|.++..++.. + .+++|+|+++.+++.++++.
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~   74 (230)
T 3cc8_A           33 WKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL   74 (230)
T ss_dssp             CSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS
T ss_pred             CCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC
Confidence            579999999999999999988 4 79999999999999887653

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.44  E-value=1e-08  Score=82.19  Aligned_cols=59  Identities=19%  Similarity=0.208  Sum_probs=40.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEE--Ecchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACI--RTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i--~~d~~~  122 (170)
                      ++.+|||||||+|.++..+++.   ..|+|||+++ |+..++++.  . ..  ... .|+.++  ++|+..
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~--~-~~--~~~~~~v~~~~~~~D~~~  135 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVP--R-IT--ESYGWNIVKFKSRVDIHT  135 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCC--C-CC--CBTTGGGEEEECSCCTTT
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhh--h-hh--hccCCCeEEEecccCHhH
Confidence            4689999999999999999987   4699999999 533221110  0 00  001 178888  888765

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.43  E-value=3e-07  Score=76.30  Aligned_cols=57  Identities=18%  Similarity=0.249  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +..+|||||||+|.++..+++.+|+..++++|+ +.+++.|++            .++|+++.+|+.+.+
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~~~  265 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------------LSGIEHVGGDMFASV  265 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTTCC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------------cCCCEEEeCCcccCC
Confidence            357999999999999999999999999999999 998876542            256899988886533

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.43  E-value=8.1e-08  Score=78.10  Aligned_cols=41  Identities=12%  Similarity=0.294  Sum_probs=35.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +.+|||||||||.++..++.. +..+|+|||+++.|++.+.+
T Consensus        86 g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r  126 (291)
T 3hp7_A           86 DMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLR  126 (291)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHH
T ss_pred             ccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHH
Confidence            579999999999999999887 44589999999999988544

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.39  E-value=2.2e-07  Score=74.79  Aligned_cols=44  Identities=11%  Similarity=0.174  Sum_probs=37.0

Q ss_pred             CCeEEEEcCccch----HHHHHhhhCC----CCeEEEEECCHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGG----LLVTLSPMFP----STLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        56 ~~~vLDiGCG~G~----~~~~la~~~p----~~~v~GvDis~~~i~~a~~~~   99 (170)
                      ..+|+|+|||+|.    +++.+++..+    +.+|+|+|+|+.|++.|++++
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            4689999999999    6666776644    468999999999999999874

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.38  E-value=5.7e-07  Score=81.00  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC------------------------------------------CCCeEEEEECCHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF------------------------------------------PSTLILGLEIRVKVS   92 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~------------------------------------------p~~~v~GvDis~~~i   92 (170)
                      ++..|||.+||+|.+++++|...                                          +...++|+|+++.++
T Consensus       190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av  269 (703)
T 3v97_A          190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI  269 (703)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred             CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence            35789999999999999998752                                          225799999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCC-eEEEEcchhhh
Q psy13087         93 DYVIDRVAALRSQNKGQYEN-IACIRTNAMKY  123 (170)
Q Consensus        93 ~~a~~~~~~~~~~~~~~~~n-v~~i~~d~~~~  123 (170)
                      +.|++|++..      ++.+ |.+.++|+.+.
T Consensus       270 ~~A~~N~~~a------gv~~~i~~~~~D~~~~  295 (703)
T 3v97_A          270 QRARTNARLA------GIGELITFEVKDVAQL  295 (703)
T ss_dssp             HHHHHHHHHT------TCGGGEEEEECCGGGC
T ss_pred             HHHHHHHHHc------CCCCceEEEECChhhC
Confidence            9999999886      5554 99999999874

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.37  E-value=2.4e-07  Score=70.93  Aligned_cols=37  Identities=24%  Similarity=0.398  Sum_probs=33.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +.+|||||||+|.++..++..      +|+|+++.+++.|+++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~   84 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR   84 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc
Confidence            468999999999999998764      9999999999998765

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.36  E-value=1.2e-06  Score=70.84  Aligned_cols=47  Identities=19%  Similarity=0.169  Sum_probs=42.2

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      .++..|||++||+|.+++.++..  +.+++|+|+++++++.|+++++..
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            34789999999999999998877  468999999999999999998775

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.35  E-value=3.3e-07  Score=76.86  Aligned_cols=42  Identities=24%  Similarity=0.349  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|+++
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc
Confidence            4689999999999999999987  45899999999999998876

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.34  E-value=5.5e-07  Score=74.23  Aligned_cols=56  Identities=23%  Similarity=0.361  Sum_probs=46.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++            .++|+++.+|+.+.+
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~~~  249 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------------NENLNFVGGDMFKSI  249 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------------CSSEEEEECCTTTCC
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------------CCCcEEEeCccCCCC
Confidence            47999999999999999999999999999999 788765532            256999999886533

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.34  E-value=3.8e-07  Score=77.73  Aligned_cols=61  Identities=15%  Similarity=0.215  Sum_probs=49.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhC-------------CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC--CeEEEEcch
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF-------------PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE--NIACIRTNA  120 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~-------------p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~i~~d~  120 (170)
                      +.+|+|.|||+|.+++.+++..             +...++|+|+++.++..|+.++...      +..  ++.+.++|+
T Consensus       172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~------g~~~~~~~i~~gD~  245 (445)
T 2okc_A          172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH------GIGTDRSPIVCEDS  245 (445)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT------TCCSSCCSEEECCT
T ss_pred             CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHh------CCCcCCCCEeeCCC
Confidence            5789999999999999998753             3457999999999999999988654      333  567777877


Q ss_pred             hh
Q psy13087        121 MK  122 (170)
Q Consensus       121 ~~  122 (170)
                      ..
T Consensus       246 l~  247 (445)
T 2okc_A          246 LE  247 (445)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.31  E-value=3.5e-07  Score=76.55  Aligned_cols=53  Identities=17%  Similarity=0.236  Sum_probs=44.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|               .++.++++|+...
T Consensus        40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------~~~~~~~~D~~~~   93 (421)
T 2ih2_A           40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILADFLLW   93 (421)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEESCGGGC
T ss_pred             CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------CCCcEEeCChhhc
Confidence            4699999999999999999876 567999999999998765               3577777777653

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.30  E-value=4e-07  Score=70.30  Aligned_cols=100  Identities=13%  Similarity=0.142  Sum_probs=67.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCC--CCCeEEEEcchhhh----------
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQ--YENIACIRTNAMKY----------  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~--~~nv~~i~~d~~~~----------  123 (170)
                      ..+|||||||  ..++.+|+. ++.+|+.||.+++..+.|++++++.     +.  .++|.++.+|+.+.          
T Consensus        31 a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~-----g~~~~~~I~~~~gda~~~~~wg~p~~~~  102 (202)
T 3cvo_A           31 AEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAAN-----PPAEGTEVNIVWTDIGPTGDWGHPVSDA  102 (202)
T ss_dssp             CSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHS-----CCCTTCEEEEEECCCSSBCGGGCBSSST
T ss_pred             CCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHc-----CCCCCCceEEEEeCchhhhcccccccch
Confidence            5799999995  577888874 4679999999999999999999875     22  46899999997643          


Q ss_pred             ----ccCC-------CchhhhhhhHhhhcCCcc--ccchhhhcccccccChhh
Q psy13087        124 ----LPNY-------FRKAQVRRCFANCILNSQ--YENIACIRTNAMKYLPNY  163 (170)
Q Consensus       124 ----l~~~-------f~~~~l~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~  163 (170)
                          ++.+       -..+.+|.||+--.+...  +.-+.+++.++....+|+
T Consensus       103 ~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~DNv  155 (202)
T 3cvo_A          103 KWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLFDDY  155 (202)
T ss_dssp             TGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEETTG
T ss_pred             hhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEEeCC
Confidence                1111       012346666653221111  123566677777777775

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.18  E-value=1.6e-06  Score=73.50  Aligned_cols=52  Identities=27%  Similarity=0.460  Sum_probs=42.3

Q ss_pred             CCeEEEEcCc------cchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCG------YGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG------~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||      +|..++.+++. +|+.+|+|||+|+.|.         .      ..+||+++++|+.+
T Consensus       217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~------~~~rI~fv~GDa~d  275 (419)
T 3sso_A          217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------V------DELRIRTIQGDQND  275 (419)
T ss_dssp             CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------G------CBTTEEEEECCTTC
T ss_pred             CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------h------cCCCcEEEEecccc
Confidence            5799999999      77777777765 5889999999999972         1      23689999999865

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.15  E-value=6.5e-06  Score=66.55  Aligned_cols=56  Identities=13%  Similarity=0.131  Sum_probs=49.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +..+||.+||.|..+..+++.  +..|+|+|.++.+++.|++ ++        . ++++++++|...+
T Consensus        23 gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~--------~-~rv~lv~~~f~~l   78 (285)
T 1wg8_A           23 GGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LH--------L-PGLTVVQGNFRHL   78 (285)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TC--------C-TTEEEEESCGGGH
T ss_pred             CCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hc--------c-CCEEEEECCcchH
Confidence            579999999999999999998  5699999999999999887 52        2 5899999998764

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.02  E-value=6.1e-07  Score=73.15  Aligned_cols=57  Identities=12%  Similarity=0.164  Sum_probs=40.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEEC----CHHHHHHHHHHHHHHhhcCCCCCCCeEEEEc-chhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEI----RVKVSDYVIDRVAALRSQNKGQYENIACIRT-NAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDi----s~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~-d~~~  122 (170)
                      ++.+|||||||+|.++..+|+.   ..|+|||+    ++.+++.+.  .+.      .+.++|.++++ |+..
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--~~~------~~~~~v~~~~~~D~~~  143 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--MST------YGWNLVRLQSGVDVFF  143 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--CCS------TTGGGEEEECSCCTTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHH--hhh------cCCCCeEEEecccccc
Confidence            3679999999999999999987   36999999    554432111  000      02257888888 7764

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.99  E-value=6.2e-06  Score=72.24  Aligned_cols=79  Identities=13%  Similarity=0.098  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC---CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC--CCeEEEEcchhhhccCCCc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF---PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY--ENIACIRTNAMKYLPNYFR  129 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~---p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~i~~d~~~~l~~~f~  129 (170)
                      ++.+|+|.+||+|.+++.+++..   +...++|+|+++.++..|+.++...      +.  +++.+.++|.....-..+.
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~------gi~~~~~~I~~gDtL~~d~p~~~  294 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILH------GVPIENQFLHNADTLDEDWPTQE  294 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHT------TCCGGGEEEEESCTTTSCSCCSS
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHc------CCCcCccceEecceecccccccc
Confidence            36799999999999999998874   3568999999999999999998654      44  4788889987753101123


Q ss_pred             hhhhhhhHhh
Q psy13087        130 KAQVRRCFAN  139 (170)
Q Consensus       130 ~~~l~~i~~~  139 (170)
                      ...+|.|+.|
T Consensus       295 ~~~fD~IvaN  304 (542)
T 3lkd_A          295 PTNFDGVLMN  304 (542)
T ss_dssp             CCCBSEEEEC
T ss_pred             cccccEEEec
Confidence            3455555554

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.95  E-value=1.1e-05  Score=65.60  Aligned_cols=69  Identities=12%  Similarity=0.154  Sum_probs=55.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+||=||-|.|..+.++.+..+..+++.|||++.+++.|++-........ -.-++++++.+|+..++.
T Consensus        84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~-~~dpRv~v~~~Dg~~~l~  152 (294)
T 3o4f_A           84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGS-YDDPRFKLVIDDGVNFVN  152 (294)
T ss_dssp             CCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTG-GGCTTEEEEESCTTTTTS
T ss_pred             CCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccc-cCCCcEEEEechHHHHHh
Confidence            579999999999999999987776799999999999999998765431110 023679999999998875

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.95  E-value=6.8e-06  Score=71.89  Aligned_cols=62  Identities=16%  Similarity=0.165  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCC------------------CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCC----
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFP------------------STLILGLEIRVKVSDYVIDRVAALRSQNKGQYEN----  112 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p------------------~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~n----  112 (170)
                      ++.+|+|.|||+|.+++.+++...                  ...++|+|+++.++..|+.++...      +..+    
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~------gi~~~~~~  242 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH------DIEGNLDH  242 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT------TCCCBGGG
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHh------CCCccccc
Confidence            357999999999999999887531                  237999999999999999987654      4444    


Q ss_pred             -eEEEEcchhh
Q psy13087        113 -IACIRTNAMK  122 (170)
Q Consensus       113 -v~~i~~d~~~  122 (170)
                       +.+.++|+..
T Consensus       243 ~~~I~~gDtL~  253 (541)
T 2ar0_A          243 GGAIRLGNTLG  253 (541)
T ss_dssp             TBSEEESCTTS
T ss_pred             cCCeEeCCCcc
Confidence             6777788654

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.84  E-value=1.2e-05  Score=64.12  Aligned_cols=72  Identities=11%  Similarity=-0.004  Sum_probs=47.6

Q ss_pred             CCeEEEEcCccchHHHHHhhh-------CCC-----CeEEEEECCH---HHHHH-----------HHHHHHHHh------
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPM-------FPS-----TLILGLEIRV---KVSDY-----------VIDRVAALR------  103 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~-------~p~-----~~v~GvDis~---~~i~~-----------a~~~~~~~~------  103 (170)
                      ..+|||||||+|..++.++..       .|+     .+|+++|..+   +.+..           |++.++...      
T Consensus        61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~  140 (257)
T 2qy6_A           61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  140 (257)
T ss_dssp             EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence            479999999999988887664       563     4899999887   55553           333333200      


Q ss_pred             --hcCCCCCCCeEEEEcchhhhccCC
Q psy13087        104 --SQNKGQYENIACIRTNAMKYLPNY  127 (170)
Q Consensus       104 --~~~~~~~~nv~~i~~d~~~~l~~~  127 (170)
                        .....+..+++++.+|+.+.++..
T Consensus       141 ~r~~~~~~~~~l~l~~GDa~~~l~~~  166 (257)
T 2qy6_A          141 HRLLLDEGRVTLDLWFGDINELISQL  166 (257)
T ss_dssp             EEEEEC--CEEEEEEESCHHHHGGGS
T ss_pred             hheeccCCceEEEEEECcHHHHHhhc
Confidence              000112357889999999877643

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.81  E-value=3.7e-05  Score=60.81  Aligned_cols=47  Identities=11%  Similarity=0.110  Sum_probs=41.4

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      .++..|||..||+|..++++...  +.+++|+|+++.+++.|+++++..
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~~~  257 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLNQL  257 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhc
Confidence            45789999999999999998877  568999999999999999998653

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.80  E-value=3.3e-05  Score=64.29  Aligned_cols=59  Identities=10%  Similarity=0.145  Sum_probs=49.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +..|||||.|.|.++..|+......+|++||+++.++...++.. .        .+|++++++|+.++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--------~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--------GSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--------TSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--------CCCEEEEECCccch
Confidence            47899999999999999998643357999999999998877654 1        26899999999653

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.79  E-value=2.8e-05  Score=62.84  Aligned_cols=76  Identities=11%  Similarity=0.070  Sum_probs=58.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhC-----CCCeEEEEECCHH--------------------------HHHHHHHHHHHHhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF-----PSTLILGLEIRVK--------------------------VSDYVIDRVAALRS  104 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~-----p~~~v~GvDis~~--------------------------~i~~a~~~~~~~~~  104 (170)
                      ...|||+||..|..++.+|...     ++.+|+++|..+.                          .++.+++++++.  
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~--  184 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY--  184 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT--
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc--
Confidence            4689999999999999998764     4678999997421                          466788888775  


Q ss_pred             cCCCCC--CCeEEEEcchhhhccCCCchhhhhhhHh
Q psy13087        105 QNKGQY--ENIACIRTNAMKYLPNYFRKAQVRRCFA  138 (170)
Q Consensus       105 ~~~~~~--~nv~~i~~d~~~~l~~~f~~~~l~~i~~  138 (170)
                          ++  ++|+++.+|+.+.++.. +.+.++.+|+
T Consensus       185 ----gl~~~~I~li~Gda~etL~~~-~~~~~d~vfI  215 (282)
T 2wk1_A          185 ----DLLDEQVRFLPGWFKDTLPTA-PIDTLAVLRM  215 (282)
T ss_dssp             ----TCCSTTEEEEESCHHHHSTTC-CCCCEEEEEE
T ss_pred             ----CCCcCceEEEEeCHHHHHhhC-CCCCEEEEEE
Confidence                44  78999999999988753 3345555555

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.79  E-value=9.7e-06  Score=59.56  Aligned_cols=37  Identities=14%  Similarity=0.053  Sum_probs=31.7

Q ss_pred             CCeEEEEcCccc-hHHHHHhhhCCCCeEEEEECCHHHHH
Q psy13087         56 KVEFVDVGCGYG-GLLVTLSPMFPSTLILGLEIRVKVSD   93 (170)
Q Consensus        56 ~~~vLDiGCG~G-~~~~~la~~~p~~~v~GvDis~~~i~   93 (170)
                      +.+|||||||.| ..+..||+.. +..|+++|+++.++.
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~   73 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG   73 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT
T ss_pred             CCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc
Confidence            469999999999 6999999853 578999999998654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.72  E-value=1.5e-05  Score=60.28  Aligned_cols=30  Identities=17%  Similarity=0.346  Sum_probs=26.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK   90 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~   90 (170)
                      +.+|||||||+|.++..++     .+++|+|+++.
T Consensus        68 ~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~   97 (215)
T 2zfu_A           68 SLVVADFGCGDCRLASSIR-----NPVHCFDLASL   97 (215)
T ss_dssp             TSCEEEETCTTCHHHHHCC-----SCEEEEESSCS
T ss_pred             CCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC
Confidence            5789999999999998884     46999999988

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.69  E-value=6.4e-05  Score=67.59  Aligned_cols=61  Identities=10%  Similarity=0.013  Sum_probs=43.8

Q ss_pred             CCeEEEEcCccchHHHH---Hhh-hC---------CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchh
Q psy13087         56 KVEFVDVGCGYGGLLVT---LSP-MF---------PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAM  121 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~---la~-~~---------p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~  121 (170)
                      ...|||||||+|.+...   +++ ..         ...+|++||.++.++..++.+...       +. +.|+++++|..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~N-------g~~d~VtVI~gd~e  482 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVR-------TWKRRVTIIESDMR  482 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHH-------TTTTCSEEEESCGG
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhc-------CCCCeEEEEeCchh
Confidence            35899999999999643   332 11         234899999999888766655542       33 45999999988


Q ss_pred             hh
Q psy13087        122 KY  123 (170)
Q Consensus       122 ~~  123 (170)
                      +.
T Consensus       483 ev  484 (745)
T 3ua3_A          483 SL  484 (745)
T ss_dssp             GH
T ss_pred             hc
Confidence            75

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.60  E-value=6.8e-05  Score=66.79  Aligned_cols=62  Identities=8%  Similarity=0.081  Sum_probs=44.7

Q ss_pred             CCeEEEEcCccchH---HHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGL---LVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~---~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ...|||||||+|.+   ++.+++... ..+|++||.++ +...|++.+++.     +--+.|+++++|..+.
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N-----~~~dkVtVI~gd~eev  423 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFE-----EWGSQVTVVSSDMREW  423 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHH-----TTGGGEEEEESCTTTC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhc-----cCCCeEEEEeCcceec
Confidence            35799999999998   555554432 23789999997 555677776654     2235699999999875

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.59  E-value=7.3e-05  Score=68.21  Aligned_cols=43  Identities=26%  Similarity=0.279  Sum_probs=37.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC---CCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP---STLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p---~~~v~GvDis~~~i~~a~~~   98 (170)
                      +.+|||.|||+|.+++.++...+   ...++|+|+++.++..|+.+
T Consensus       322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~R  367 (878)
T 3s1s_A          322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIR  367 (878)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHH
T ss_pred             CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHH
Confidence            57999999999999999998775   34799999999999999433

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.59  E-value=1.6e-05  Score=69.68  Aligned_cols=75  Identities=12%  Similarity=0.102  Sum_probs=52.1

Q ss_pred             CeEEEEcCccchHHHHHhhhCC---------------CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcch
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFP---------------STLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNA  120 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p---------------~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~  120 (170)
                      .+|+|.+||+|.+++.++....               ...++|+|+++.++..|+.++...      ++ .++.+.++|.
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~------gi~~~i~i~~gDt  319 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIR------GIDFNFGKKNADS  319 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT------TCCCBCCSSSCCT
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHh------CCCcccceeccch
Confidence            3899999999999999875432               358999999999999999998664      32 2343456665


Q ss_pred             hhhccCCCchhhhhhhHhh
Q psy13087        121 MKYLPNYFRKAQVRRCFAN  139 (170)
Q Consensus       121 ~~~l~~~f~~~~l~~i~~~  139 (170)
                      ...  ..+....++.|+.|
T Consensus       320 L~~--~~~~~~~fD~Iv~N  336 (544)
T 3khk_A          320 FLD--DQHPDLRADFVMTN  336 (544)
T ss_dssp             TTS--CSCTTCCEEEEEEC
T ss_pred             hcC--cccccccccEEEEC
Confidence            532  12333455555554

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.58  E-value=5.7e-05  Score=61.16  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=26.8

Q ss_pred             CCCeEEEEcCcc------chHHHHHhhhCC-CCeEEEEECCHH
Q psy13087         55 KKVEFVDVGCGY------GGLLVTLSPMFP-STLILGLEIRVK   90 (170)
Q Consensus        55 ~~~~vLDiGCG~------G~~~~~la~~~p-~~~v~GvDis~~   90 (170)
                      ++.+|||||||+      |.  ..+++..+ +..|+|+|+++.
T Consensus        63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~  103 (290)
T 2xyq_A           63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF  103 (290)
T ss_dssp             TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC
T ss_pred             CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC
Confidence            468999999944      66  44566665 579999999998

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.57  E-value=0.00016  Score=59.86  Aligned_cols=59  Identities=10%  Similarity=0.091  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++..+||..||.|..+..+++.. |+.+|+|+|+++.+++.|+ ++         ..+++++++++...+
T Consensus        57 pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---------~~~Rv~lv~~nF~~l  116 (347)
T 3tka_A           57 PDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---------DDPRFSIIHGPFSAL  116 (347)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---------CCTTEEEEESCGGGH
T ss_pred             CCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---------cCCcEEEEeCCHHHH
Confidence            46899999999999999999875 6789999999999999883 32         126899999988764

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.37  E-value=0.00054  Score=57.73  Aligned_cols=61  Identities=13%  Similarity=0.093  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCccchHHHHHh-hhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLS-PMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRT  118 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la-~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~  118 (170)
                      ++..|+|||++.|.++..++ +..+. .+|+++|-++..++..+++++..   .++.. +|++++.+
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~---~N~~~~~~v~~~~~  289 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY---TDTNFASRITVHGC  289 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT---TTSTTGGGEEEECS
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhh---hccCCCCCEEEEEe
Confidence            46899999999999999988 56654 69999999999999999998761   00234 67877764

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.36  E-value=0.00049  Score=57.30  Aligned_cols=71  Identities=7%  Similarity=-0.003  Sum_probs=55.6

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      .+++.+|||+++|.|.=+..+|...+...++++|+++..+...+++++++.........|+.+...|+..+
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~  216 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKW  216 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGH
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhc
Confidence            35678999999999999999998876668999999999999999999876221111125788888887653

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.18  E-value=0.00055  Score=57.26  Aligned_cols=58  Identities=16%  Similarity=0.263  Sum_probs=43.9

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +.++.++|||||+.|.++..+++.  +..|+|||+.+-. .    .+.        ..++|.++++|+..+.+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~-~----~l~--------~~~~V~~~~~d~~~~~~  266 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMA-Q----SLM--------DTGQVTWLREDGFKFRP  266 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCC-H----HHH--------TTTCEEEECSCTTTCCC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcC-h----hhc--------cCCCeEEEeCccccccC
Confidence            345899999999999999999988  5689999986421 1    111        33689999998887643

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.10  E-value=0.0001  Score=54.02  Aligned_cols=42  Identities=10%  Similarity=-0.182  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||.                +++|+|+.|++.|+++..          .++.++.+|+..
T Consensus        12 ~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~----------~~~~~~~~d~~~   53 (176)
T 2ld4_A           12 AGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG----------NEGRVSVENIKQ   53 (176)
T ss_dssp             TTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT----------TTSEEEEEEGGG
T ss_pred             CCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc----------cCcEEEEechhc
Confidence            478999999996                238999999999988742          247777777664

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.02  E-value=0.0004  Score=55.93  Aligned_cols=37  Identities=22%  Similarity=0.374  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKV   91 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~   91 (170)
                      ++.+|||||||.|.++..++...+...++|+|+...+
T Consensus        90 ~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~  126 (282)
T 3gcz_A           90 PTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQG  126 (282)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCc
Confidence            3679999999999999999977666689999998653

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=96.90  E-value=0.00094  Score=58.20  Aligned_cols=61  Identities=21%  Similarity=0.184  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCC-------------CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFP-------------STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM  121 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p-------------~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~  121 (170)
                      ++.+|+|-+||+|.|++.+.....             ...++|+|+++.++..|+.++--+      +.++-.+..+|..
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lh------g~~~~~I~~~dtL  290 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLH------GLEYPRIDPENSL  290 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHH------TCSCCEEECSCTT
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhc------CCccccccccccc
Confidence            357999999999999998765321             246999999999999999887655      4444445556654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.90  E-value=0.0006  Score=54.78  Aligned_cols=37  Identities=19%  Similarity=0.315  Sum_probs=30.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKV   91 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~   91 (170)
                      ++.+|||||||+|.++..++...+...+.|+|+..++
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl  110 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDG  110 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccC
Confidence            3579999999999999999887655578899988553

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.60  E-value=0.0013  Score=51.93  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK   90 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~   90 (170)
                      ++..||||||+.|.++..++.......|+|+|+-..
T Consensus        78 ~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~  113 (267)
T 3p8z_A           78 PEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGP  113 (267)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCST
T ss_pred             CCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCC
Confidence            467999999999999999998876668999999765

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.60  E-value=0.0012  Score=53.65  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK   90 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~   90 (170)
                      ++..||||||++|.++..++.......|+|+|+-..
T Consensus        94 ~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~  129 (321)
T 3lkz_A           94 PVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGP  129 (321)
T ss_dssp             CCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCST
T ss_pred             CCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCC
Confidence            467999999999999999998876568999999766

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.38  E-value=0.0044  Score=51.99  Aligned_cols=80  Identities=13%  Similarity=0.101  Sum_probs=54.7

Q ss_pred             CCeEEEEcCccchHHHHHhhh-----------------CCCCeEEEEECC-----------HHHHHHHHHHHHHHhhcCC
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPM-----------------FPSTLILGLEIR-----------VKVSDYVIDRVAALRSQNK  107 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~-----------------~p~~~v~GvDis-----------~~~i~~a~~~~~~~~~~~~  107 (170)
                      ..+|+|+||++|..++.+...                 .|...|+.-|+-           +.+.+.+++.   .     
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~-----  124 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---N-----  124 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---T-----
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---c-----
Confidence            368999999999998877766                 366788899987           4443332111   1     


Q ss_pred             CCCCCeEEEEcchhhhccCCCchhhhhhhHhhhcCC
Q psy13087        108 GQYENIACIRTNAMKYLPNYFRKAQVRRCFANCILN  143 (170)
Q Consensus       108 ~~~~nv~~i~~d~~~~l~~~f~~~~l~~i~~~~~~~  143 (170)
                      +...+-.|+.+..-.+....|+.++++.+|.+..-.
T Consensus       125 g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLH  160 (384)
T 2efj_A          125 GRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLH  160 (384)
T ss_dssp             CCCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTT
T ss_pred             cCCCCceEEEecchhhhhccCCCCceEEEEecceee
Confidence            111234666777777777889999999888775443

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.32  E-value=0.0025  Score=51.65  Aligned_cols=36  Identities=19%  Similarity=0.363  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK   90 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~   90 (170)
                      ++.+||||||++|.++..+++..+-..|+|+|+...
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~  116 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE  116 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc
Confidence            478999999999999999998765557999999754

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.30  E-value=0.0044  Score=50.43  Aligned_cols=46  Identities=15%  Similarity=0.017  Sum_probs=40.7

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      .++..|||-=||+|..+.++...  +.+++|+|+++.+++.|+++++.
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence            45789999999999999998877  57899999999999999988754

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=96.15  E-value=0.0089  Score=50.07  Aligned_cols=68  Identities=15%  Similarity=0.200  Sum_probs=50.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhc--CCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQ--NKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~--~~~~~~nv~~i~~d~~~~l  124 (170)
                      .++||=||-|.|..+.++.+. +..+++.|||++++++.|++-.......  ..-..++++++.+|+..++
T Consensus       206 pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl  275 (381)
T 3c6k_A          206 GKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVL  275 (381)
T ss_dssp             TCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHH
T ss_pred             CCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHH
Confidence            579999999999999999875 4479999999999999998864221000  0001145889999988766

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.05  E-value=0.0096  Score=48.89  Aligned_cols=57  Identities=7%  Similarity=0.155  Sum_probs=43.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ..+|+|+-||.|.+...+....-. ..++++|+++.+++..+.|.           ++..++.+|+.+.
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~-----------~~~~~~~~Di~~~   59 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----------PHTQLLAKTIEGI   59 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----------TTSCEECSCGGGC
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc-----------cccccccCCHHHc
Confidence            368999999999999999887311 36999999999999888774           2334556676654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.05  E-value=0.0081  Score=48.95  Aligned_cols=47  Identities=6%  Similarity=-0.106  Sum_probs=40.0

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCH---HHHHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRV---KVSDYVIDRVAAL  102 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~---~~i~~a~~~~~~~  102 (170)
                      .++..|||-=||+|..+.++...  +.+++|+|+++   ..++.|++++++.
T Consensus       241 ~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          241 HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC---
T ss_pred             CCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHHHc
Confidence            34789999999999999998888  57899999999   9999999998654

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=95.56  E-value=0.025  Score=47.08  Aligned_cols=55  Identities=13%  Similarity=0.131  Sum_probs=43.5

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      .+++|+-||.|.++..+.... -..+.++|+++.+++..+.|.           ++..++.+|+.+.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG-~~~v~avE~d~~a~~t~~~N~-----------~~~~~~~~DI~~~   57 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG-FDVKMAVEIDQHAINTHAINF-----------PRSLHVQEDVSLL   57 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT-CEEEEEECSCHHHHHHHHHHC-----------TTSEEECCCGGGC
T ss_pred             CeEEEEccCcCHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHhC-----------CCCceEecChhhc
Confidence            579999999999999998873 235779999999988777663           4566777777654

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=94.54  E-value=0.024  Score=45.18  Aligned_cols=23  Identities=35%  Similarity=0.602  Sum_probs=21.0

Q ss_pred             CCCCeEEEEcCccchHHHHHhhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPM   76 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~   76 (170)
                      +++.+||||||+.|.++..++..
T Consensus        72 kpg~~VVDLGaAPGGWSQvAa~~   94 (269)
T 2px2_A           72 QPIGKVVDLGCGRGGWSYYAATM   94 (269)
T ss_dssp             CCCEEEEEETCTTSHHHHHHTTS
T ss_pred             CCCCEEEEcCCCCCHHHHHHhhh
Confidence            45789999999999999999987

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=94.44  E-value=0.1  Score=43.41  Aligned_cols=47  Identities=17%  Similarity=0.245  Sum_probs=31.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcch
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA  120 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~  120 (170)
                      ..+|+|+|||+|..++.+...              +++..+++....    +...+.+++...|.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~--------------ii~~i~~~~~~~----~~~~pe~~v~~nDL   99 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDF--------------IVKHISKRFDAA----GIDPPEFTAFFSDL   99 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHH--------------HHHHHHHHHHHT----TCCCCCEEEEEEEC
T ss_pred             ceEEEecCCCCChhHHHHHHH--------------HHHHHHHHHhhc----CCCCCceeEEecCC
Confidence            578999999999999998866              555555554432    11234677766554

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=94.39  E-value=0.074  Score=43.35  Aligned_cols=43  Identities=16%  Similarity=0.209  Sum_probs=36.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~   99 (170)
                      +.+++|+.||.|.+...+.... -..+.++|+++.+++..+.|.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG-~~~v~~~e~d~~a~~t~~~N~   53 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHH
T ss_pred             CCcEEEECCCcCHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHc
Confidence            4789999999999999998763 336889999999999888875

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=93.95  E-value=0.0091  Score=49.61  Aligned_cols=82  Identities=11%  Similarity=0.168  Sum_probs=55.9

Q ss_pred             CCeEEEEcCccchHHHHHhhh----------------CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPM----------------FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN  119 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~----------------~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d  119 (170)
                      ..+|+|+||++|..++.+...                .|...|+.-|+-......+-+.+...    ... .+-.++.+.
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~----~~~-~~~~f~~gv  126 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE----NDV-DGVCFINGV  126 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTS----CSC-TTCEEEEEE
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchh----ccc-CCCEEEEec
Confidence            367999999999877765544                45678889998877766655443211    000 134666666


Q ss_pred             hhhhccCCCchhhhhhhHhhhcC
Q psy13087        120 AMKYLPNYFRKAQVRRCFANCIL  142 (170)
Q Consensus       120 ~~~~l~~~f~~~~l~~i~~~~~~  142 (170)
                      .-.+....|+.++++.+|.+..-
T Consensus       127 pgSFy~rlfp~~S~d~v~Ss~aL  149 (359)
T 1m6e_X          127 PGSFYGRLFPRNTLHFIHSSYSL  149 (359)
T ss_dssp             ESCSSSCCSCTTCBSCEEEESCT
T ss_pred             chhhhhccCCCCceEEEEehhhh
Confidence            66667778999999988876543

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=93.27  E-value=0.22  Score=40.06  Aligned_cols=57  Identities=9%  Similarity=-0.040  Sum_probs=42.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCe-EEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTL-ILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~-v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ..+++|+=||.|.+...+....-... +.++|+++.+++.-+.|.           ++..++.+|+.++
T Consensus        16 ~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----------~~~~~~~~DI~~i   73 (295)
T 2qrv_A           16 PIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----------QGKIMYVGDVRSV   73 (295)
T ss_dssp             CEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----------TTCEEEECCGGGC
T ss_pred             CCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----------CCCceeCCChHHc
Confidence            57899999999999999887632322 699999999887765552           3345666777764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=92.89  E-value=0.15  Score=42.03  Aligned_cols=43  Identities=7%  Similarity=0.023  Sum_probs=35.9

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVI   96 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~   96 (170)
                      +++.+||-+|||. |.+++.+|+.....+|+++|.+++.++.++
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  227 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS  227 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence            4578999999987 889999998764338999999999887765

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=92.36  E-value=0.01  Score=47.82  Aligned_cols=60  Identities=7%  Similarity=-0.030  Sum_probs=50.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +..+||+=+|+|.+++++.+.  ..+++.+|.+++.+...++|++.        .+++++++.|+...+.
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~--------~~~~~V~~~D~~~~L~  151 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHF--------NKKVYVNHTDGVSKLN  151 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCT--------TSCEEEECSCHHHHHH
T ss_pred             CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCc--------CCcEEEEeCcHHHHHH
Confidence            456899999999999998873  46899999999999988888642        2679999999877654

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=92.26  E-value=0.26  Score=40.14  Aligned_cols=45  Identities=16%  Similarity=0.225  Sum_probs=36.8

Q ss_pred             CCCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         53 CEKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        53 ~~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +.++.+||-+|||. |.+++.+|+......|+++|.+++.++.+++
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            34578999999987 8889999987643379999999998888754

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=91.73  E-value=0.3  Score=39.77  Aligned_cols=44  Identities=14%  Similarity=0.172  Sum_probs=35.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeE-EEEECCHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLI-LGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v-~GvDis~~~i~~a~~~~   99 (170)
                      ..+++|+-||.|.+...+....- ...+ .++|+++.+++.-+.|.
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~   55 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNF   55 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHH
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHC
Confidence            46899999999999999887631 1245 79999999998887775

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=91.56  E-value=0.61  Score=38.01  Aligned_cols=45  Identities=22%  Similarity=0.410  Sum_probs=36.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      ...||.||||.......+...+++..++-||. |+.++.-++.+.+
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~  142 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRE  142 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhh
Confidence            47899999999999999998777777887777 7777766666554

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=91.39  E-value=0.47  Score=38.42  Aligned_cols=44  Identities=7%  Similarity=0.094  Sum_probs=35.8

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      .++.+||-+|+|. |.+++.+|+.....+|+++|.+++..+.+++
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            4578999999986 8889999988743389999999998777653

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=91.31  E-value=0.29  Score=39.96  Aligned_cols=43  Identities=9%  Similarity=0.187  Sum_probs=35.0

Q ss_pred             CeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHH
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~   99 (170)
                      .+++|+-||.|.+...+....-+ ..+.++|+++.+++.-+.|.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~   47 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF   47 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC
Confidence            57999999999999999877321 35889999999988776663

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=91.28  E-value=0.47  Score=38.95  Aligned_cols=44  Identities=7%  Similarity=0.013  Sum_probs=36.3

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||-+|||. |.+++.+|+......|+++|.+++.++.+++
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            4578999999977 8899999998753479999999998887754

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=89.95  E-value=0.61  Score=37.45  Aligned_cols=44  Identities=9%  Similarity=0.144  Sum_probs=36.9

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||=+|+|. |.+++.+|+.....+|+++|.+++-.+.+++
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            4578999999976 8888999988756799999999998887754

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=89.58  E-value=0.86  Score=36.46  Aligned_cols=43  Identities=14%  Similarity=0.080  Sum_probs=36.2

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||-+|+|. |.+++.+|+.. +.+|+++|.+++..+.+++
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH
Confidence            4578999999986 88999999987 4699999999998887654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=88.01  E-value=0.88  Score=37.10  Aligned_cols=43  Identities=12%  Similarity=0.108  Sum_probs=35.8

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||-+|+|. |.+++.+|+.. +++|+++|.+++.++.+++
T Consensus       193 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          193 GPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence            4578999999985 88888999876 4689999999998887764

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=87.75  E-value=1.2  Score=35.74  Aligned_cols=43  Identities=9%  Similarity=0.152  Sum_probs=35.1

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||-+|+|. |.+++.+|+.. +.+|+++|.+++..+.+++
T Consensus       167 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          167 QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH
Confidence            4578999999986 78888899876 4579999999998887753

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=87.56  E-value=0.67  Score=34.19  Aligned_cols=32  Identities=19%  Similarity=0.157  Sum_probs=29.8

Q ss_pred             CeEEEEcCccchHHHHHhhhCCCCeEEEEECC
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMFPSTLILGLEIR   88 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis   88 (170)
                      .-|||+|-|+|..--.|.+.+|+..++.+|..
T Consensus        42 GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~   73 (174)
T 3iht_A           42 GPVYELGLGNGRTYHHLRQHVQGREIYVFERA   73 (174)
T ss_dssp             SCEEEECCTTCHHHHHHHHHCCSSCEEEEESS
T ss_pred             CceEEecCCCChhHHHHHHhCCCCcEEEEEee
Confidence            46999999999999999999999999999974

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=87.31  E-value=1  Score=36.30  Aligned_cols=45  Identities=16%  Similarity=0.163  Sum_probs=36.0

Q ss_pred             CCCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         53 CEKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        53 ~~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      ++++.+||=+|+|. |.+++.+|+......|+++|.+++.++.+++
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  209 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE  209 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            34578999999986 7888888987643389999999998887765

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=87.28  E-value=0.68  Score=38.68  Aligned_cols=42  Identities=14%  Similarity=0.209  Sum_probs=31.7

Q ss_pred             CeEEEEcCccchHHHHHhhh---C----CCCeEEEEECCHHHHHHHHHH
Q psy13087         57 VEFVDVGCGYGGLLVTLSPM---F----PSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~---~----p~~~v~GvDis~~~i~~a~~~   98 (170)
                      -.|+|+|.|+|.++.-+...   .    ...+++.||+|+...+.-+++
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~  130 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTL  130 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHH
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHH
Confidence            47999999999998776543   2    234899999999987654433

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=87.04  E-value=1  Score=36.51  Aligned_cols=44  Identities=14%  Similarity=0.021  Sum_probs=35.3

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||-+|+|. |.+++.+|+......|+++|.+++.++.+++
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            4578999999875 7788899988643389999999998887753

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=86.91  E-value=0.8  Score=36.82  Aligned_cols=43  Identities=12%  Similarity=0.098  Sum_probs=35.8

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||=+|+|. |.+++.+|+.. +++|+++|.+++..+.+++
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALS  218 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHh
Confidence            4578999999986 88889999886 4699999999998887754

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=86.59  E-value=1.5  Score=37.56  Aligned_cols=60  Identities=10%  Similarity=0.061  Sum_probs=43.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ..+++|+=||.|.+...+.... ...+.++|+++.+++.-+.|..        ..++..++.+|+.++.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG-~~~v~avE~d~~A~~ty~~N~~--------~~p~~~~~~~DI~~i~  147 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYKANHY--------CDPATHHFNEDIRDIT  147 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTT-EEEEEEECCCHHHHHHHHHHSC--------CCTTTCEEESCTHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHhcc--------cCCCcceeccchhhhh
Confidence            4689999999999999988762 2358999999998877665531        1134455667777654

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=86.47  E-value=1.2  Score=36.21  Aligned_cols=43  Identities=14%  Similarity=0.079  Sum_probs=34.9

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVI   96 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~   96 (170)
                      +++.+||=+|+|. |.+++.+|+......|+++|.+++.++.++
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~  233 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK  233 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            4578999999876 778888898864338999999999887775

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=86.38  E-value=0.45  Score=40.37  Aligned_cols=45  Identities=13%  Similarity=0.150  Sum_probs=35.1

Q ss_pred             CeEEEEcCccchHHHHHhhhC----C-CCeEEEEECCHHHHHHHHHHHHH
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMF----P-STLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~----p-~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      ..|+|+|.|+|.++.-+....    + ..+++-||+|+.+.+.-++++..
T Consensus       139 ~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          139 RRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            689999999999877765432    1 23799999999998877777654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=86.32  E-value=1.7  Score=35.23  Aligned_cols=44  Identities=9%  Similarity=-0.032  Sum_probs=36.1

Q ss_pred             CCCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         53 CEKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        53 ~~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      ++++.+||=+|+|. |.+++.+|+.. +++|+++|.+++.++.+++
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~  231 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFA  231 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHH
Confidence            34578999999886 78888888876 4699999999998887654

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=86.17  E-value=0.99  Score=36.63  Aligned_cols=45  Identities=13%  Similarity=0.048  Sum_probs=35.6

Q ss_pred             CCCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         53 CEKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        53 ~~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +.++.+||=+|+|. |.+++.+|+......|+++|.+++..+.+++
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            34578999999875 7788888887643389999999998877753

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=85.77  E-value=1.9  Score=34.27  Aligned_cols=53  Identities=15%  Similarity=0.109  Sum_probs=39.8

Q ss_pred             eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +|||+=||.|.+...+.... -..+.++|+++.+++.-+.|.           + -.++.+|+.+.
T Consensus         2 kvidLFsG~GG~~~G~~~aG-~~~v~a~e~d~~a~~ty~~N~-----------~-~~~~~~DI~~i   54 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESNH-----------S-AKLIKGDISKI   54 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTT-CEEEEEEECCTTTHHHHHHHC-----------C-SEEEESCGGGC
T ss_pred             eEEEeCcCccHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHHC-----------C-CCcccCChhhC
Confidence            69999999999999887663 235789999999888776652           2 24566777654

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=85.67  E-value=1.4  Score=35.85  Aligned_cols=44  Identities=11%  Similarity=0.046  Sum_probs=35.1

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      .++.+||=+|+|. |.+++.+|+.....+|+++|.+++..+.+++
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            4578999999875 7788899988743389999999998877653

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=85.65  E-value=1.6  Score=35.14  Aligned_cols=45  Identities=9%  Similarity=0.011  Sum_probs=36.6

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +++.+||=+|+|. |.+++.+|+......|+++|.+++..+.+++.
T Consensus       178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            4578898899976 88899999887433499999999998888764

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=85.48  E-value=1.3  Score=35.53  Aligned_cols=43  Identities=14%  Similarity=0.231  Sum_probs=34.9

Q ss_pred             CCCeEEEEcCcc-chHHHHHhhhC-CCCeEEEEECCHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGY-GGLLVTLSPMF-PSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~   97 (170)
                      ++.+||-+|+|. |.+++.+|+.. |+++|+++|.+++..+.+++
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE  214 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence            468999999975 77888888875 35689999999998887754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=85.42  E-value=1.8  Score=35.20  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=36.2

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||=+|+|. |.+++.+|+......|+++|.+++..+.+++
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  225 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE  225 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            4578999999976 8888999988754489999999998887765

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=85.32  E-value=1.2  Score=36.17  Aligned_cols=44  Identities=16%  Similarity=0.129  Sum_probs=35.2

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||=+|+|. |.+++.+|+......|+++|.+++..+.+++
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~  233 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE  233 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            4578999999876 7788888887643389999999998887753

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=85.32  E-value=1.7  Score=35.41  Aligned_cols=43  Identities=12%  Similarity=-0.011  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVI   96 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~   96 (170)
                      +++.+||-+|+|. |.+++.+|+.....+|++++.+++.++.++
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~  237 (380)
T 1vj0_A          194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE  237 (380)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH
Confidence            3578999999774 778888888864258999999999887775

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=85.01  E-value=1.7  Score=34.79  Aligned_cols=44  Identities=18%  Similarity=0.410  Sum_probs=34.6

Q ss_pred             CCCCeEEEEcCc--cchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCG--YGGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG--~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      .++.+||-+|+|  .|..+..+++...+++|+++|.+++..+.+++
T Consensus       169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~  214 (347)
T 1jvb_A          169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR  214 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            457899999998  66677888877524689999999988877643

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=84.73  E-value=1.1  Score=32.67  Aligned_cols=41  Identities=12%  Similarity=0.055  Sum_probs=31.9

Q ss_pred             CCCeEEEEcC--ccchHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087         55 KKVEFVDVGC--GYGGLLVTLSPMFPSTLILGLEIRVKVSDYVI   96 (170)
Q Consensus        55 ~~~~vLDiGC--G~G~~~~~la~~~p~~~v~GvDis~~~i~~a~   96 (170)
                      ++.+||-+|+  |.|..+..+++.. +.+|+++|.+++..+.++
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS   80 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH
Confidence            4689999994  6677777777765 468999999998776553

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=84.15  E-value=2.1  Score=34.00  Aligned_cols=41  Identities=7%  Similarity=0.108  Sum_probs=33.5

Q ss_pred             CCCCeEEEEcC--ccchHHHHHhhhCCCCeEEEEECCHHHHHHH
Q psy13087         54 EKKVEFVDVGC--GYGGLLVTLSPMFPSTLILGLEIRVKVSDYV   95 (170)
Q Consensus        54 ~~~~~vLDiGC--G~G~~~~~la~~~p~~~v~GvDis~~~i~~a   95 (170)
                      .++.+||-.||  |.|..+..+++.. +++|+++|.+++.++.+
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~  186 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYL  186 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHH
Confidence            45789999998  6777888888775 46999999999887766

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=83.25  E-value=7.5  Score=30.15  Aligned_cols=59  Identities=10%  Similarity=0.274  Sum_probs=43.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|=-|.+.|. +..+|+.+  .+++|+.+|++++.++.+.+.++..      + .++.++.+|+.+
T Consensus         7 gKvalVTGas~GI-G~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~------g-~~~~~~~~Dvt~   67 (254)
T 4fn4_A            7 NKVVIVTGAGSGI-GRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM------G-KEVLGVKADVSK   67 (254)
T ss_dssp             TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------T-CCEEEEECCTTS
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc------C-CcEEEEEccCCC
Confidence            5778888877665 34444332  3678999999999998888887664      2 468888888874

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=83.22  E-value=2.6  Score=33.65  Aligned_cols=43  Identities=5%  Similarity=0.050  Sum_probs=35.7

Q ss_pred             CCCCeEEEEcC--ccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGC--GYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGC--G~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||-+|+  |.|..++.+++.. +.+|++++.+++.++.+++
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~  209 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKA  209 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh
Confidence            45789999998  6788899999876 4699999999998887753

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=83.20  E-value=1.9  Score=34.49  Aligned_cols=42  Identities=17%  Similarity=0.159  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcC--ccchHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087         54 EKKVEFVDVGC--GYGGLLVTLSPMFPSTLILGLEIRVKVSDYVI   96 (170)
Q Consensus        54 ~~~~~vLDiGC--G~G~~~~~la~~~p~~~v~GvDis~~~i~~a~   96 (170)
                      .++.+||-+|+  |.|..+..+++.. +.+|+++|.+++..+.++
T Consensus       168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~  211 (347)
T 2hcy_A          168 MAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFR  211 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHH
Confidence            45789999998  6788888888876 469999999988776654

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=83.20  E-value=3  Score=33.21  Aligned_cols=44  Identities=11%  Similarity=0.045  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcCccc-hHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYG-GLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~G-~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||=+|+|.+ .++..+++.....+|+++|.+++-++.+++
T Consensus       162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~  206 (348)
T 4eez_A          162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK  206 (348)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh
Confidence            45789999999874 466666766667899999999987776654

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=82.93  E-value=1.4  Score=35.52  Aligned_cols=43  Identities=12%  Similarity=0.064  Sum_probs=34.9

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||-+|+|. |.+++.+|+.. +++|+++|.+++.++.+++
T Consensus       178 ~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          178 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK  221 (360)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence            4578999999864 77888888876 4589999999988877764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=82.81  E-value=2.7  Score=34.57  Aligned_cols=44  Identities=14%  Similarity=0.024  Sum_probs=35.5

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||=+|+|. |.+++.+|+......|+++|.+++-.+.+++
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  256 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE  256 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            4578899999876 7788888887753489999999998887754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=82.74  E-value=2.2  Score=36.10  Aligned_cols=52  Identities=13%  Similarity=0.141  Sum_probs=36.5

Q ss_pred             CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++|+=+||  |.++..+|+..  .+..|+.||.+++.++.+.++.            .+..+.+|+..
T Consensus         4 M~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~------------~~~~i~Gd~~~   57 (461)
T 4g65_A            4 MKIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY------------DLRVVNGHASH   57 (461)
T ss_dssp             EEEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS------------SCEEEESCTTC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc------------CcEEEEEcCCC
Confidence            56665555  57777777765  3458999999999988765442            36677777664

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=82.63  E-value=1.3  Score=36.11  Aligned_cols=44  Identities=18%  Similarity=0.179  Sum_probs=35.3

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||=+|+|. |.+++.+|+.....+|+++|.+++.++.|++
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~  236 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK  236 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            4578899999974 8888889987643389999999998887653

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=82.62  E-value=0.62  Score=41.29  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=26.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhC-------CC-----CeEEEEECCH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF-------PS-----TLILGLEIRV   89 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~-------p~-----~~v~GvDis~   89 (170)
                      .-+|+|+|.|+|...+.+...+       |.     .+++.+|..|
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p  104 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYP  104 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCC
Confidence            4699999999999877776543       21     4799999944

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=82.31  E-value=3.1  Score=33.24  Aligned_cols=42  Identities=12%  Similarity=0.125  Sum_probs=34.5

Q ss_pred             CCCCeEEEEcCc-cchHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087         54 EKKVEFVDVGCG-YGGLLVTLSPMFPSTLILGLEIRVKVSDYVI   96 (170)
Q Consensus        54 ~~~~~vLDiGCG-~G~~~~~la~~~p~~~v~GvDis~~~i~~a~   96 (170)
                      .++.+||-+|+| .|..++.+|+.. +.+|+++|.+++.++.++
T Consensus       163 ~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~  205 (339)
T 1rjw_A          163 KPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAK  205 (339)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH
Confidence            457899999986 477888888876 469999999999887765

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=82.13  E-value=6.1  Score=30.43  Aligned_cols=60  Identities=8%  Similarity=0.040  Sum_probs=40.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +++||=.|++ |.++..+++.+  .+.+|++++.+++.++...+.+...      +..++.++.+|+.+
T Consensus        28 ~k~vlITGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~d   89 (286)
T 1xu9_A           28 GKKVIVTGAS-KGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL------GAASAHYIAGTMED   89 (286)
T ss_dssp             TCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH------TCSEEEEEECCTTC
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh------CCCceEEEeCCCCC
Confidence            4678888865 44555555432  2578999999998877766665544      22468888888764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=82.06  E-value=2.2  Score=31.72  Aligned_cols=36  Identities=6%  Similarity=-0.024  Sum_probs=25.2

Q ss_pred             EEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHH
Q psy13087         59 FVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVI   96 (170)
Q Consensus        59 vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~   96 (170)
                      |+=+|  .|.++..+++..  .+..|+.+|.+++.++...
T Consensus         3 iiIiG--~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~   40 (218)
T 3l4b_C            3 VIIIG--GETTAYYLARSMLSRKYGVVIINKDRELCEEFA   40 (218)
T ss_dssp             EEEEC--CHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred             EEEEC--CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence            44455  477777777653  3568999999999876543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=81.41  E-value=7.1  Score=29.59  Aligned_cols=59  Identities=8%  Similarity=-0.009  Sum_probs=41.0

Q ss_pred             CCeEEEEcC-ccch---HHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGC-GYGG---LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGC-G~G~---~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++|=.|+ |.|.   ++..+++.  +.+|+.++.+.+.++.+.+.++..      ...++.++.+|+.+
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~~Dl~~   84 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLE--GADVVISDYHERRLGETRDQLADL------GLGRVEAVVCDVTS   84 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTT------CSSCEEEEECCTTC
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhc------CCCceEEEEeCCCC
Confidence            567888886 5543   33444444  578999999999887777666443      23579999998764

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=81.36  E-value=1.5  Score=35.69  Aligned_cols=34  Identities=18%  Similarity=0.363  Sum_probs=26.0

Q ss_pred             CCCeEEEEcC------ccchHHHHHhhhCCC-CeEEEEECCHH
Q psy13087         55 KKVEFVDVGC------GYGGLLVTLSPMFPS-TLILGLEIRVK   90 (170)
Q Consensus        55 ~~~~vLDiGC------G~G~~~~~la~~~p~-~~v~GvDis~~   90 (170)
                      -+.+|||+|+      -.|.  ..+++..|. ..|+++|+.+-
T Consensus       109 ~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~  149 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF  149 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC
T ss_pred             CCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccc
Confidence            4789999996      6666  355556775 59999999875

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=80.96  E-value=1.6  Score=34.95  Aligned_cols=44  Identities=16%  Similarity=0.337  Sum_probs=36.0

Q ss_pred             CCCCCeEEEEcCc--cchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         53 CEKKVEFVDVGCG--YGGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        53 ~~~~~~vLDiGCG--~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      ++++.+||=+|+|  .|..++.+|+.. +++|+++|.+++.++.+++
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh
Confidence            3457899999986  688888888876 4699999999988877764

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=80.39  E-value=2.8  Score=33.39  Aligned_cols=42  Identities=14%  Similarity=0.154  Sum_probs=34.6

Q ss_pred             CCCCeEEEEcC--ccchHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087         54 EKKVEFVDVGC--GYGGLLVTLSPMFPSTLILGLEIRVKVSDYVI   96 (170)
Q Consensus        54 ~~~~~vLDiGC--G~G~~~~~la~~~p~~~v~GvDis~~~i~~a~   96 (170)
                      +++.+||-+|+  |.|..+..+++.. +++|++++.+++.++.++
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~  197 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLK  197 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence            45789999997  6788888888876 469999999998877765

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=80.14  E-value=1.9  Score=33.81  Aligned_cols=42  Identities=10%  Similarity=0.073  Sum_probs=34.5

Q ss_pred             CCCCeEEEEcC--ccchHHHHHhhhCCCCeEEEEECCHHHHHHHH
Q psy13087         54 EKKVEFVDVGC--GYGGLLVTLSPMFPSTLILGLEIRVKVSDYVI   96 (170)
Q Consensus        54 ~~~~~vLDiGC--G~G~~~~~la~~~p~~~v~GvDis~~~i~~a~   96 (170)
                      +++.+||-+|+  |.|..++.+|+.. +++|++++.+++..+.++
T Consensus       124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~  167 (302)
T 1iz0_A          124 RPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPL  167 (302)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence            35789999998  5688889999876 469999999988777664

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=80.04  E-value=2.5  Score=33.52  Aligned_cols=41  Identities=10%  Similarity=0.195  Sum_probs=34.4

Q ss_pred             CCCCeEEEEcC--ccchHHHHHhhhCCCCeEEEEECCHHHHHHH
Q psy13087         54 EKKVEFVDVGC--GYGGLLVTLSPMFPSTLILGLEIRVKVSDYV   95 (170)
Q Consensus        54 ~~~~~vLDiGC--G~G~~~~~la~~~p~~~v~GvDis~~~i~~a   95 (170)
                      +++.+||-+|+  |.|..++.+++.. +++|++++.+++.++.+
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~  190 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFL  190 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHH
Confidence            45789999998  6788888888876 46999999999887776

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=80.03  E-value=7.6  Score=29.80  Aligned_cols=60  Identities=10%  Similarity=0.104  Sum_probs=41.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++|=.|++.| ++.++|+.+  .+.+|++++.+++..+.+.+.+...      ...++.++.+|+.+
T Consensus        12 ~k~vlITGas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~~Dl~~   73 (311)
T 3o26_A           12 RRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS------NHENVVFHQLDVTD   73 (311)
T ss_dssp             CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------TCCSEEEEECCTTS
T ss_pred             CcEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCCceEEEEccCCC
Confidence            467887887644 455544433  3578999999998877776666543      33579999988865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d1yzha1	204	c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra	8e-04
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.001
d2fcaa1	204	c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr	0.002

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 36.4 bits (83), Expect = 8e-04
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 60  VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTN 119
           V+VG G G  +  ++   P    +G++I+  V  Y      AL    +    NI  +  +
Sbjct: 36  VEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSY------ALDKVLEVGVPNIKLLWVD 89

Query: 120 AMKYLPNYFRKAQVRRCFANCILNSQYENIACIRTNAMKYLPNYFR 165
               L +YF   ++ R + N       +     R     +L  + R
Sbjct: 90  GSD-LTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKR 134

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 59  FVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNK---GQYENIAC 115
           FVD+G G G +++ ++         G+E     + Y        R   K    ++     
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214

Query: 116 IRTNAMKYLPNYFRKAQVRRCFANCILNSQYENIAC 151
            R + +       R A     F N        +   
Sbjct: 215 ERGDFLS-EEWRERIANTSVIFVNNFAFGPEVDHQL 249

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 60  VDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY 110
           ++VG G G  +  ++   P    +G+E+   V    + +V    +QN    
Sbjct: 34  IEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLL 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.71
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.71
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.5
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.49
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.43
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.42
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.41
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.38
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.36
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.35
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.33
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.32
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.32
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.31
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.31
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.3
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.27
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.27
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.26
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.25
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.25
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.25
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.24
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.22
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.22
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.21
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.21
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.2
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.19
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.18
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.18
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.17
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.12
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.11
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.11
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.1
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.1
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.09
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.09
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.08
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.06
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.05
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.05
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.05
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.04
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.03
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.03
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.02
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.01
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.0
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.99
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.95
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.91
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.91
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.91
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.88
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.85
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.84
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.84
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.84
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.81
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.8
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.79
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.79
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.77
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.76
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.72
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.68
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.68
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.6
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.48
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.47
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.44
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.42
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.35
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.26
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.23
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.17
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.16
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.08
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.02
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.0
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.97
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.87
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.86
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.81
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.78
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.65
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.62
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.61
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.52
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.5
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.46
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.41
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.39
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.0
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	96.98
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.94
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.82
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.64
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.59
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.21
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.16
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.12
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.11
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.96
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	94.72
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.71
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.34
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.05
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.85
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	93.72
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.39
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.65
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	92.61
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	92.31
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.15
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.49
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.35
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	89.98
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.82
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.35
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.27
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	89.04
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	88.54
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	87.83
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	87.68
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.41
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	87.05
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	86.92
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	86.78
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	86.63
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	86.41
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	86.39
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	86.27
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	85.7
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	85.69
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	85.16
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	84.1
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	83.97
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	83.92
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	83.35
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	83.29
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	83.19
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	83.19
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	82.0
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	81.96
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	81.77
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.74
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	81.72
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	81.3
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	81.15
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	80.95
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	80.93

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.71  E-value=6.9e-18  Score=129.37  Aligned_cols=92  Identities=22%  Similarity=0.425  Sum_probs=82.7

Q ss_pred             CCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEc
Q psy13087         39 MDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT  118 (170)
Q Consensus        39 ~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~  118 (170)
                      ..|...|...       ++.|||||||+|.++..+|+.+|+..++|||+++.++..|.+++.+.      +++||+++.+
T Consensus        22 ~~w~~~f~~~-------~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~------~l~Ni~~~~~   88 (204)
T d1yzha1          22 AKWRDLFGND-------NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV------GVPNIKLLWV   88 (204)
T ss_dssp             TTHHHHHTSC-------CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH------CCSSEEEEEC
T ss_pred             ccHHHHcCCC-------CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhh------ccccceeeec
Confidence            5798888764       47999999999999999999999999999999999999999999887      7899999999


Q ss_pred             chhhhccCCCchhhhhhhHhhhcCCc
Q psy13087        119 NAMKYLPNYFRKAQVRRCFANCILNS  144 (170)
Q Consensus       119 d~~~~l~~~f~~~~l~~i~~~~~~~g  144 (170)
                      |+...+ ++|++.+++.+++++|.|.
T Consensus        89 da~~l~-~~~~~~~~~~i~i~fPdPw  113 (204)
T d1yzha1          89 DGSDLT-DYFEDGEIDRLYLNFSDPW  113 (204)
T ss_dssp             CSSCGG-GTSCTTCCSEEEEESCCCC
T ss_pred             CHHHHh-hhccCCceehhcccccccc
Confidence            998744 6788899999999888875

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.71  E-value=3.3e-18  Score=131.21  Aligned_cols=92  Identities=17%  Similarity=0.315  Sum_probs=81.4

Q ss_pred             CCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEc
Q psy13087         39 MDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRT  118 (170)
Q Consensus        39 ~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~  118 (170)
                      -+|...|+..       ++.|||||||+|.+++.+|+.+|+.+++|||+++.++..|.+++++.      +++||+++++
T Consensus        20 ~~w~~~F~~~-------~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~------~l~Nv~~~~~   86 (204)
T d2fcaa1          20 GKWNTVFGND-------NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS------EAQNVKLLNI   86 (204)
T ss_dssp             TCHHHHHTSC-------CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS------CCSSEEEECC
T ss_pred             hHHHHHcCCC-------CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHH------hccCchhccc
Confidence            4688888864       47999999999999999999999999999999999999999999886      7899999999


Q ss_pred             chhhhccCCCchhhhhhhHhhhcCCc
Q psy13087        119 NAMKYLPNYFRKAQVRRCFANCILNS  144 (170)
Q Consensus       119 d~~~~l~~~f~~~~l~~i~~~~~~~g  144 (170)
                      |+...+ +.|++++++.++++++.|.
T Consensus        87 Da~~l~-~~~~~~~~d~v~i~fp~P~  111 (204)
T d2fcaa1          87 DADTLT-DVFEPGEVKRVYLNFSDPW  111 (204)
T ss_dssp             CGGGHH-HHCCTTSCCEEEEESCCCC
T ss_pred             chhhhh-cccCchhhhcccccccccc
Confidence            998654 5678888888888888774

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.2e-14  Score=115.64  Aligned_cols=101  Identities=13%  Similarity=0.214  Sum_probs=83.4

Q ss_pred             CccchhhhcccCCCCcCCCCCCCCCCCCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHH
Q psy13087         11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK   90 (170)
Q Consensus        11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~   90 (170)
                      +.+.||..+..++|..  .++.|.++...+|.......      .+.+|||+|||+|.+++.+|...|+..|+|+|+|+.
T Consensus        72 G~~~F~~~~~~v~~~V--lIPRpeTE~lv~~~l~~~~~------~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~  143 (274)
T d2b3ta1          72 GVREFWSLPLFVSPAT--LIPRPDTECLVEQALARLPE------QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPD  143 (274)
T ss_dssp             CEEEETTEEEECCTTS--CCCCTTHHHHHHHHHHHSCS------SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHH
T ss_pred             CcEEEeeeEEEEeccc--cccccchhhhhhhHhhhhcc------cccceeeeehhhhHHHHHHHhhCCcceeeeccchhH
Confidence            7889999999999875  35777776555554332222      257899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         91 VSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        91 ~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +++.|++|++.+      +++||.++++|....++
T Consensus       144 Al~~A~~Na~~~------~~~~v~~~~~d~~~~~~  172 (274)
T d2b3ta1         144 AVSLAQRNAQHL------AIKNIHILQSDWFSALA  172 (274)
T ss_dssp             HHHHHHHHHHHH------TCCSEEEECCSTTGGGT
T ss_pred             HHhHHHHHHHHh------CcccceeeecccccccC
Confidence            999999999987      66789999999877553

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.49  E-value=3.2e-14  Score=109.36  Aligned_cols=61  Identities=16%  Similarity=0.265  Sum_probs=55.0

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +++.+|||||||+|.++..+++..  .+|+|||+|+.|++.|++++...      +.+|+.++++|+.+
T Consensus        15 ~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~------~~~~~~~~~~d~~~   75 (234)
T d1xxla_          15 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK------GVENVRFQQGTAES   75 (234)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHH------TCCSEEEEECBTTB
T ss_pred             CCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccc------cccccccccccccc
Confidence            457899999999999999999985  47999999999999999998876      67899999999876

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.43  E-value=1.3e-13  Score=105.01  Aligned_cols=62  Identities=11%  Similarity=0.246  Sum_probs=54.0

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +++.+|||||||+|.++..+++..  .+|+|+|+|++|++.|+++++..      +.+|+.++++|+.+.
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~------~~~~i~~~~~d~~~l   75 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGN------GHQQVEYVQGDAEQM   75 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCC-CC
T ss_pred             CCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccc------ccccccccccccccc
Confidence            346899999999999999999885  47999999999999999998775      678999999998863

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=3e-13  Score=104.60  Aligned_cols=64  Identities=22%  Similarity=0.340  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||||||+|.++..+++.++ +.|+|||+|+.|++.|+++.+..     +..++|.++.+|+.+..
T Consensus        33 pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~-----gl~~~v~~~~~d~~~~~   96 (245)
T d1nkva_          33 PGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEEL-----GVSERVHFIHNDAAGYV   96 (245)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEESCCTTCC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHh-----hccccchhhhhHHhhcc
Confidence            468999999999999999998865 78999999999999999998775     23346999999988753

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.41  E-value=3.3e-13  Score=103.08  Aligned_cols=86  Identities=12%  Similarity=0.209  Sum_probs=63.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc--------
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP--------  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~--------  125 (170)
                      +.+|||||||+|..+..+++..  |+.+|+|||+|++|++.|+++++..     +...++.+..+|..++..        
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~d~i~~  114 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-----HSEIPVEILCNDIRHVEIKNASMVIL  114 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS-----CCSSCEEEECSCTTTCCCCSEEEEEE
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh-----cccchhhhccchhhccccccceeeEE
Confidence            5799999999999999999863  7889999999999999999998764     234567777777665321        


Q ss_pred             ----CCCch----hhhhhhHhhhcCCcccc
Q psy13087        126 ----NYFRK----AQVRRCFANCILNSQYE  147 (170)
Q Consensus       126 ----~~f~~----~~l~~i~~~~~~~g~~~  147 (170)
                          ++++.    ..+.+++. .++|||..
T Consensus       115 ~~~l~~~~~~d~~~~l~~i~~-~LkpgG~l  143 (225)
T d1im8a_         115 NFTLQFLPPEDRIALLTKIYE-GLNPNGVL  143 (225)
T ss_dssp             ESCGGGSCGGGHHHHHHHHHH-HEEEEEEE
T ss_pred             eeeccccChhhHHHHHHHHHH-hCCCCcee
Confidence                22332    34566665 57777743

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.38  E-value=6.6e-13  Score=99.14  Aligned_cols=63  Identities=22%  Similarity=0.318  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||||||+|.+++.+|...  .+|+|+|+++++++.|++|+++.     +..+||+++++|+.+.+
T Consensus        33 ~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~-----gl~~~v~~~~gda~~~~   95 (186)
T d1l3ia_          33 KNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRH-----GLGDNVTLMEGDAPEAL   95 (186)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHT-----TCCTTEEEEESCHHHHH
T ss_pred             CCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHc-----CCCcceEEEECchhhcc
Confidence            47899999999999999999874  47999999999999999999886     33369999999998765

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.36  E-value=5e-13  Score=102.10  Aligned_cols=62  Identities=18%  Similarity=0.216  Sum_probs=55.1

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++.+|||||||+|.++..+|...|+..|+|||+|+.|++.|+++++..        +|+.++..|+..
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~--------~ni~~i~~d~~~  115 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--------NNIIPLLFDASK  115 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--------SSEEEECSCTTC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc--------CCceEEEeeccC
Confidence            45689999999999999999999998889999999999999999988664        588888888765

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.35  E-value=2e-12  Score=102.81  Aligned_cols=90  Identities=16%  Similarity=0.330  Sum_probs=65.7

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC-----
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY-----  127 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~-----  127 (170)
                      ++++.+|||||||+|.++..+++.++ ++|+|||+|+++++.|++++++.     +...++.+...|....-..+     
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~-----~l~~~~~~~~~d~~~~~~~fD~i~s  123 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASI-----DTNRSRQVLLQGWEDFAEPVDRIVS  123 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTS-----CCSSCEEEEESCGGGCCCCCSEEEE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhh-----ccccchhhhhhhhhhhccchhhhhH
Confidence            34579999999999999999998874 69999999999999999998775     33346777777766532211     


Q ss_pred             ------Cchh----hhhhhHhhhcCCccccch
Q psy13087        128 ------FRKA----QVRRCFANCILNSQYENI  149 (170)
Q Consensus       128 ------f~~~----~l~~i~~~~~~~g~~~~~  149 (170)
                            +...    .+.++. ..++|||..-|
T Consensus       124 i~~~eh~~~~~~~~~f~~i~-~~LkpgG~~~i  154 (280)
T d2fk8a1         124 IEAFEHFGHENYDDFFKRCF-NIMPADGRMTV  154 (280)
T ss_dssp             ESCGGGTCGGGHHHHHHHHH-HHSCTTCEEEE
T ss_pred             hhHHHHhhhhhHHHHHHHHH-hccCCCceEEE
Confidence                  3323    244443 36888886544

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.33  E-value=1.4e-12  Score=102.81  Aligned_cols=64  Identities=22%  Similarity=0.253  Sum_probs=55.2

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      .++.+|||||||+|.++..+|+.+ +++|+|||+|+.+++.|+++.+..     +..+++.++.+|+.+.
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~-----gl~~~v~~~~~d~~~l  129 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQA-----GLADNITVKYGSFLEI  129 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHH-----TCTTTEEEEECCTTSC
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccc-----cccccccccccccccc
Confidence            357899999999999999999875 568999999999999999998876     3335899999998763

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.32  E-value=2.9e-12  Score=102.19  Aligned_cols=90  Identities=14%  Similarity=0.234  Sum_probs=68.5

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC-----
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY-----  127 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~-----  127 (170)
                      ++++.+|||||||+|.+++.+|+.+ +++|+||++|++.++.|++++++.     +..+++++..+|....-..+     
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~-----g~~~~v~~~~~d~~~~~~~fD~i~s  133 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANS-----ENLRSKRVLLAGWEQFDEPVDRIVS  133 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTC-----CCCSCEEEEESCGGGCCCCCSEEEE
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhh-----hhhhhhHHHHhhhhcccccccceee
Confidence            4568999999999999999999998 489999999999999999998775     45678999999876532211     


Q ss_pred             ------Cc----hhhhhhhHhhhcCCccccch
Q psy13087        128 ------FR----KAQVRRCFANCILNSQYENI  149 (170)
Q Consensus       128 ------f~----~~~l~~i~~~~~~~g~~~~~  149 (170)
                            +.    ...+.++.. +++|||..-|
T Consensus       134 i~~~eh~~~~~~~~~~~~~~r-~LkpgG~~~l  164 (285)
T d1kpga_         134 IGAFEHFGHERYDAFFSLAHR-LLPADGVMLL  164 (285)
T ss_dssp             ESCGGGTCTTTHHHHHHHHHH-HSCTTCEEEE
T ss_pred             ehhhhhcCchhHHHHHHHHHh-hcCCCCcEEE
Confidence                  22    223444444 6788876554

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.32  E-value=3.5e-12  Score=95.55  Aligned_cols=60  Identities=15%  Similarity=0.099  Sum_probs=52.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|..+..+++.  +.+|+|+|+|+.|++.|+++++..      +.+++.+...|+...
T Consensus        31 ~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~------~~~~~~~~~~d~~~~   90 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAE------GLDNLQTDLVDLNTL   90 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------TCTTEEEEECCTTTC
T ss_pred             CCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhc------cccchhhhheecccc
Confidence            358999999999999999988  457999999999999999998775      667899888887653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=2.9e-12  Score=102.44  Aligned_cols=63  Identities=13%  Similarity=0.219  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      .++.+|||||||+|.++..+|+.++ ++|+||++|+++++.|+++++..     +....+.+...|...
T Consensus        60 ~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~-----~l~~~v~~~~~d~~~  122 (291)
T d1kpia_          60 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEV-----DSPRRKEVRIQGWEE  122 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHS-----CCSSCEEEEECCGGG
T ss_pred             CCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhh-----ccchhhhhhhhcccc
Confidence            4589999999999999999999885 79999999999999999998875     333457777777643

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.31  E-value=2.1e-12  Score=97.27  Aligned_cols=58  Identities=21%  Similarity=0.375  Sum_probs=49.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.+|||||||+|.++..+|+.  +.+|+|+|+|+.|++.|+++....      + .++.++.+|+.+
T Consensus        38 ~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~------~-~~~~~~~~d~~~   95 (226)
T d1ve3a1          38 RGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSR------E-SNVEFIVGDARK   95 (226)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------T-CCCEEEECCTTS
T ss_pred             CCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccc------c-cccccccccccc
Confidence            579999999999999999986  468999999999999999988764      2 456777777765

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.30  E-value=1.9e-12  Score=101.51  Aligned_cols=81  Identities=11%  Similarity=0.137  Sum_probs=64.2

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKA  131 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~  131 (170)
                      ++++.+|||+|||+|.++..+|+. .|..+|+++|+++++++.|++++++.     ....|+.+.++|+.+.++    ++
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~-----~~~~nv~~~~~Di~~~~~----~~  153 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF-----YDIGNVRTSRSDIADFIS----DQ  153 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT-----SCCTTEEEECSCTTTCCC----SC
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-----cCCCceEEEEeeeecccc----cc
Confidence            345799999999999999999986 46779999999999999999999775     356899999999876543    33


Q ss_pred             hhhhhHhhhcC
Q psy13087        132 QVRRCFANCIL  142 (170)
Q Consensus       132 ~l~~i~~~~~~  142 (170)
                      .+|.++...+.
T Consensus       154 ~fD~V~ld~p~  164 (250)
T d1yb2a1         154 MYDAVIADIPD  164 (250)
T ss_dssp             CEEEEEECCSC
T ss_pred             eeeeeeecCCc
Confidence            44444444333

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=5.6e-12  Score=99.48  Aligned_cols=87  Identities=14%  Similarity=0.171  Sum_probs=70.1

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKA  131 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~  131 (170)
                      +.++.+|||+|||+|.++..||+. .|+.+|+++|+++++++.|++|++....   ...+|+.++.+|+.+.   -++++
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~---~~~~nv~~~~~d~~~~---~~~~~  167 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG---QPPDNWRLVVSDLADS---ELPDG  167 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---SCCTTEEEECSCGGGC---CCCTT
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc---CCCceEEEEecccccc---cccCC
Confidence            567899999999999999999997 5788999999999999999999876421   2457999999998753   24566


Q ss_pred             hhhhhHhhhcCCcc
Q psy13087        132 QVRRCFANCILNSQ  145 (170)
Q Consensus       132 ~l~~i~~~~~~~g~  145 (170)
                      ++|.+|...+.|..
T Consensus       168 ~fDaV~ldlp~P~~  181 (264)
T d1i9ga_         168 SVDRAVLDMLAPWE  181 (264)
T ss_dssp             CEEEEEEESSCGGG
T ss_pred             CcceEEEecCCHHH
Confidence            77777776666653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.7e-12  Score=98.90  Aligned_cols=61  Identities=10%  Similarity=-0.017  Sum_probs=52.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++...+ .+|+|||+|++|++.|++++...      +..+++++++|+.+.
T Consensus        61 ~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~------~~~~~~f~~~d~~~~  121 (222)
T d2ex4a1          61 TSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEE------GKRVRNYFCCGLQDF  121 (222)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGG------GGGEEEEEECCGGGC
T ss_pred             CCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccc------ccccccccccccccc
Confidence            57899999999999999877664 48999999999999999987664      456889999998874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.26  E-value=4.8e-12  Score=96.65  Aligned_cols=65  Identities=18%  Similarity=0.293  Sum_probs=57.5

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +++.+|||||||+|.++..+|+.. +...|+++|+++++++.|+++++..      ...|+.++.+|+.+.+
T Consensus        74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~------~~~n~~~~~~d~~~~~  139 (213)
T d1dl5a1          74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL------GIENVIFVCGDGYYGV  139 (213)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCC
T ss_pred             cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh------cccccccccCchHHcc
Confidence            457999999999999999999875 5678999999999999999999875      7789999999987643

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.25  E-value=6.7e-12  Score=96.67  Aligned_cols=59  Identities=14%  Similarity=0.250  Sum_probs=51.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..+++..  .+++|||+|++|++.|++++...      + .+++++++|+..+
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~------~-~~v~~~~~d~~~~   96 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQ------G-LKPRLACQDISNL   96 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHT------T-CCCEEECCCGGGC
T ss_pred             CCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhcccccccc------C-ccceeeccchhhh
Confidence            4689999999999999999985  47999999999999999988764      3 3799999988764

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.25  E-value=1.2e-11  Score=94.96  Aligned_cols=59  Identities=14%  Similarity=0.272  Sum_probs=51.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ..+|||||||+|.++..+++.  +.+|+|||+|++|++.|++++...      + .++.++++|+.+.
T Consensus        42 ~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~------~-~~i~~~~~d~~~l  100 (251)
T d1wzna1          42 VRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKER------N-LKIEFLQGDVLEI  100 (251)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------T-CCCEEEESCGGGC
T ss_pred             CCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccc------c-ccchheehhhhhc
Confidence            568999999999999999987  458999999999999999998764      2 3789999988764

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.25  E-value=3.4e-12  Score=98.78  Aligned_cols=63  Identities=17%  Similarity=0.229  Sum_probs=54.6

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.++.+|||||||+|.++..+|...|+..|+|||+|+.|++.|+++++.        .+|+..+.+|+...
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~--------~~ni~~i~~d~~~~  134 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--------RENIIPILGDANKP  134 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--------CTTEEEEECCTTCG
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh--------hcccceEEEeeccC
Confidence            4568999999999999999999999988999999999999999888643        36788888777654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.24  E-value=6.2e-12  Score=94.21  Aligned_cols=62  Identities=16%  Similarity=0.330  Sum_probs=52.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC--CCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY--ENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~i~~d~~~~l  124 (170)
                      ++.+|||||||+|.+++.+|+..+  +|+|+|+|+.+++.|+++++..      ++  .+++++.+|..+.+
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~------~l~~~~i~~~~~d~~~~~  115 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLN------NLDNYDIRVVHSDLYENV  115 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHT------TCTTSCEEEEECSTTTTC
T ss_pred             CCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHh------CCccceEEEEEcchhhhh
Confidence            368999999999999999998865  6999999999999999998765      33  35899999987644

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.22  E-value=1.3e-11  Score=95.67  Aligned_cols=62  Identities=16%  Similarity=0.193  Sum_probs=51.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|||||||+|..+..+++.. ..+|+|||+|++|++.|+++....     +...++.++++|+..
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~-----~~~~~v~f~~~D~~~   85 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNM-----KRRFKVFFRAQDSYG   85 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTS-----CCSSEEEEEESCTTT
T ss_pred             CcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhc-----CCCcceEEEEcchhh
Confidence            46899999999999999999874 348999999999999999987664     233578999998754

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.22  E-value=3.5e-12  Score=96.67  Aligned_cols=86  Identities=10%  Similarity=0.078  Sum_probs=59.5

Q ss_pred             hcccCCCCcCCCCCCCCCCCCC-C--ccc-cCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHH
Q psy13087         18 QRAHSNPIADHSVEYPPSPNDM-D--WSP-LYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSD   93 (170)
Q Consensus        18 ~r~~~~p~~~~~~~~p~~~~~~-~--w~~-~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~   93 (170)
                      ...+.+|... .-||+|+++.. .  |.. ...++.      +++|||+|||+|.+++.++...+ .+|+|||+++.+++
T Consensus        14 ~~~~~~~~~~-leQy~T~~~~a~~~~~~~~~~~dl~------Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~   85 (197)
T d1ne2a_          14 LQQQGNFKNY-LEQYPTDASTAAYFLIEIYNDGNIG------GRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIE   85 (197)
T ss_dssp             SCCCC---------CCCCHHHHHHHHHHHHHHTSSB------TSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHH
T ss_pred             CCCCCCCCcc-cccCCCCHHHHHHHHHHHHHcCCCC------CCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHH
Confidence            3446666654 23899987653 2  222 234443      78999999999999998887643 48999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         94 YVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        94 ~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      .|++|+           .++.++.+|+.+
T Consensus        86 ~ar~N~-----------~~~~~~~~D~~~  103 (197)
T d1ne2a_          86 TAKRNC-----------GGVNFMVADVSE  103 (197)
T ss_dssp             HHHHHC-----------TTSEEEECCGGG
T ss_pred             HHHHcc-----------ccccEEEEehhh
Confidence            998874           468888899875

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=6e-12  Score=98.97  Aligned_cols=59  Identities=19%  Similarity=0.418  Sum_probs=51.8

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      .++.+|||||||+|.++..+++.+|+..++|||+|+.|++.|+++           .+|+.++++|+.+.
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~-----------~~~~~~~~~d~~~l  141 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-----------YPQVTFCVASSHRL  141 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-----------CTTSEEEECCTTSC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc-----------cccccceeeehhhc
Confidence            346899999999999999999999999999999999999998765           25789999998763

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.21  E-value=2.5e-11  Score=94.32  Aligned_cols=84  Identities=18%  Similarity=0.276  Sum_probs=65.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc----------
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP----------  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~----------  125 (170)
                      ..+|||||||+|.++..+++.+|+..++++|+ +++++.+++++...     +..++|+++.+|+.+..+          
T Consensus        81 ~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~rv~~~~~D~~~~~~~~~D~v~~~~  154 (253)
T d1tw3a2          81 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE-----GLSDRVDVVEGDFFEPLPRKADAIILSF  154 (253)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT-----TCTTTEEEEECCTTSCCSSCEEEEEEES
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHh-----hcccchhhccccchhhcccchhheeecc
Confidence            57999999999999999999999999999998 67899999998775     344689999999765432          


Q ss_pred             --CCCchhh----hhhhHhhhcCCccc
Q psy13087        126 --NYFRKAQ----VRRCFANCILNSQY  146 (170)
Q Consensus       126 --~~f~~~~----l~~i~~~~~~~g~~  146 (170)
                        +.++++.    |.+++. .++|||.
T Consensus       155 vlh~~~d~~~~~~L~~~~~-~LkPGG~  180 (253)
T d1tw3a2         155 VLLNWPDHDAVRILTRCAE-ALEPGGR  180 (253)
T ss_dssp             CGGGSCHHHHHHHHHHHHH-TEEEEEE
T ss_pred             ccccCCchhhHHHHHHHHH-hcCCCcE
Confidence              2244443    444444 5777764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.20  E-value=9.1e-12  Score=91.51  Aligned_cols=45  Identities=13%  Similarity=0.110  Sum_probs=41.1

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      ++.+|||+|||+|..+..||+.  +.+|+|+|+|+.|++.|+++++.
T Consensus        20 ~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~   64 (201)
T d1pjza_          20 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGE   64 (201)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCS
T ss_pred             CCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhcc
Confidence            4689999999999999999988  67999999999999999998743

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.19  E-value=2.9e-11  Score=92.18  Aligned_cols=80  Identities=14%  Similarity=0.092  Sum_probs=59.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc----------
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP----------  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~----------  125 (170)
                      +.+|||||||+|.++..++...  .+|+|||+|+++++.|+++.          ..|+.++.+|+.+...          
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~----------~~~~~~~~~~~~~~~~~~~fD~I~~~   88 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRL----------KDGITYIHSRFEDAQLPRRYDNIVLT   88 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHS----------CSCEEEEESCGGGCCCSSCEEEEEEE
T ss_pred             CCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhccc----------cccccccccccccccccccccccccc
Confidence            4689999999999999999875  46999999999999998763          2478888888765421          


Q ss_pred             ----CCC-chhhhhhhHhhhcCCcccc
Q psy13087        126 ----NYF-RKAQVRRCFANCILNSQYE  147 (170)
Q Consensus       126 ----~~f-~~~~l~~i~~~~~~~g~~~  147 (170)
                          ++- +...+.+++..+++|||..
T Consensus        89 ~vleh~~d~~~~l~~i~~~~Lk~gG~l  115 (225)
T d2p7ia1          89 HVLEHIDDPVALLKRINDDWLAEGGRL  115 (225)
T ss_dssp             SCGGGCSSHHHHHHHHHHTTEEEEEEE
T ss_pred             ceeEecCCHHHHHHHHHHHhcCCCceE
Confidence                111 3344666766678888743

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.18  E-value=3.7e-11  Score=94.71  Aligned_cols=67  Identities=15%  Similarity=0.243  Sum_probs=57.1

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.++.+|||+|||+|.++..+|+.. |..+|+|+|+++++++.|+++++..     +..+++.+...|+...+
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~-----g~~~~v~~~~~d~~~~~  168 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW-----GLIERVTIKVRDISEGF  168 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-----TCGGGEEEECCCGGGCC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-----ccccCcEEEeccccccc
Confidence            4678999999999999999999875 6789999999999999999999886     33467888888876543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.18  E-value=3.1e-11  Score=95.30  Aligned_cols=61  Identities=25%  Similarity=0.416  Sum_probs=52.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.++..++...|. .+|+|+|+|+.+++.|+++....      + .++.++.+|+.+.
T Consensus        28 ~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~------~-~~~~f~~~d~~~~   89 (281)
T d2gh1a1          28 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL------P-YDSEFLEGDATEI   89 (281)
T ss_dssp             CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS------S-SEEEEEESCTTTC
T ss_pred             cCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc------c-ccccccccccccc
Confidence            579999999999999999998874 68999999999999999998764      2 3788888887753

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=3e-11  Score=94.70  Aligned_cols=63  Identities=16%  Similarity=0.137  Sum_probs=53.1

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ..++.+|||+|||+|.+++.+++.  +.+|+|+|+|+.|++.|++|++..      +. +++++++|+...+
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n------~~-~~~~~~~d~~~~~  180 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRN------GV-RPRFLEGSLEAAL  180 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHT------TC-CCEEEESCHHHHG
T ss_pred             cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHc------CC-ceeEEeccccccc
Confidence            356789999999999999998876  457999999999999999998774      44 5678888887654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=9.5e-11  Score=94.80  Aligned_cols=85  Identities=14%  Similarity=0.178  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhh-CCCCeEEEEECCHHHHHHHHHHHHHHhhc-----CCCCCCCeEEEEcchhhhccC
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPM-FPSTLILGLEIRVKVSDYVIDRVAALRSQ-----NKGQYENIACIRTNAMKYLPN  126 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~-~p~~~v~GvDis~~~i~~a~~~~~~~~~~-----~~~~~~nv~~i~~d~~~~l~~  126 (170)
                      +.++.+|||+|||+|.++..||+. .|+..|+++|+++++++.|++|+++....     .....+|+.+.++|+......
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~  175 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  175 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence            567899999999999999999986 47789999999999999999999875321     122357899999998754321


Q ss_pred             CCchhhhhhhHh
Q psy13087        127 YFRKAQVRRCFA  138 (170)
Q Consensus       127 ~f~~~~l~~i~~  138 (170)
                       +....+|.+|+
T Consensus       176 -~~~~~fD~V~L  186 (324)
T d2b25a1         176 -IKSLTFDAVAL  186 (324)
T ss_dssp             ------EEEEEE
T ss_pred             -cCCCCcceEee
Confidence             23334444444

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=4e-11  Score=91.17  Aligned_cols=42  Identities=12%  Similarity=0.159  Sum_probs=38.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~   99 (170)
                      +.+|||||||+|.++..+++.  +.+|+|||+|+.|++.|+++.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~   84 (246)
T d2avna1          43 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKG   84 (246)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHT
T ss_pred             CCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccc
Confidence            579999999999999999987  568999999999999998874

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=3.3e-11  Score=93.03  Aligned_cols=62  Identities=21%  Similarity=0.201  Sum_probs=52.4

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +.++.+|||+|||+|.++..+|... |...|+|+|+++.+++.++++++.        ..|+..+..|+..
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~--------~~~~~~i~~d~~~  133 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--------RRNIVPILGDATK  133 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------CTTEEEEECCTTC
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh--------cCCceEEEEECCC
Confidence            4568999999999999999999975 677999999999999999988753        3577777777643

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.5e-10  Score=93.49  Aligned_cols=69  Identities=16%  Similarity=0.184  Sum_probs=56.5

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhc---CCCCCCCeEEEEcchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQ---NKGQYENIACIRTNAMK  122 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~---~~~~~~nv~~i~~d~~~  122 (170)
                      .++.+|||||||+|.+++.+|+.++..+++|||+++.+++.|+++.++.+..   .+-...+|.++++|+..
T Consensus       150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~  221 (328)
T d1nw3a_         150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  221 (328)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence            4578999999999999999999988778999999999999999987764321   11134689999999853

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.10  E-value=2.1e-10  Score=89.53  Aligned_cols=64  Identities=23%  Similarity=0.315  Sum_probs=54.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+|||||||+|.++..+++.+|+.+++++|+ +++++.|+++++..     +..+++.++.+|..+.++
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~-----~~~~ri~~~~~d~~~~~p  145 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA-----GLADRVTVAEGDFFKPLP  145 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT-----TCTTTEEEEECCTTSCCS
T ss_pred             CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhc-----CCcceeeeeeeecccccc
Confidence            46899999999999999999999999999997 88999999998775     344678998888776443

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.1e-10  Score=89.65  Aligned_cols=70  Identities=14%  Similarity=0.160  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +++.+|||||||+|..+..+|+.. +...|+|||+++++++.|++++++..... -...++.++.+|+....
T Consensus        75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~-~~~~~~~~~~gD~~~~~  145 (224)
T d1i1na_          75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL-LSSGRVQLVVGDGRMGY  145 (224)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHH-HHTSSEEEEESCGGGCC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccc-ccccceEEEEeeccccc
Confidence            457899999999999999999864 56799999999999999999987641100 02467899999987543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=4.1e-11  Score=91.60  Aligned_cols=106  Identities=10%  Similarity=0.195  Sum_probs=78.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC---Cchh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY---FRKA  131 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~---f~~~  131 (170)
                      ..+|||||||+|..++.+|...+ +.+++++|+++++++.|+++++..     +..++|+++.+|+.+.++.+   +..+
T Consensus        57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~-----gl~~~i~l~~Gd~~e~l~~l~~~~~~~  131 (214)
T d2cl5a1          57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA-----GLQDKVTILNGASQDLIPQLKKKYDVD  131 (214)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHH-----TCGGGEEEEESCHHHHGGGHHHHSCCC
T ss_pred             CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHc-----CCCccceeeeccccccccchhhccccc
Confidence            47899999999999999998764 579999999999999999999886     33356999999999887654   2334


Q ss_pred             hhhhhHhhhcCCccccc-------hhhhcccccccChhhhhhc
Q psy13087        132 QVRRCFANCILNSQYEN-------IACIRTNAMKYLPNYFRKA  167 (170)
Q Consensus       132 ~l~~i~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~  167 (170)
                      .+|.+|+-+-+ ..|..       ..+++.++....+|++.+|
T Consensus       132 ~~D~ifiD~~~-~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g  173 (214)
T d2cl5a1         132 TLDMVFLDHWK-DRYLPDTLLLEKCGLLRKGTVLLADNVIVPG  173 (214)
T ss_dssp             CEEEEEECSCG-GGHHHHHHHHHHTTCEEEEEEEEESCCCCCC
T ss_pred             ccceeeecccc-cccccHHHHHHHhCccCCCcEEEEeCcCCCC
Confidence            56666653222 22211       2456777777777766655

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.6e-11  Score=92.21  Aligned_cols=61  Identities=11%  Similarity=-0.041  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.++..+++..+ .+++|||+|+.+++.|+++.+..       ..++.++..++...
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~  113 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDV  113 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHH
T ss_pred             CCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhc-------cccccccccccccc
Confidence            367999999999999999998754 58999999999999999987542       24577777776543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.06  E-value=1.4e-10  Score=88.71  Aligned_cols=66  Identities=17%  Similarity=0.244  Sum_probs=58.2

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ++++.+|||||||+|..+..+|+... ..|++||+++++++.|++++++.      +.+|+.++++|....++
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~------g~~nv~~~~gd~~~g~~  141 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERA------GVKNVHVILGDGSKGFP  141 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCCG
T ss_pred             cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHc------CCceeEEEECccccCCc
Confidence            34579999999999999999998764 57999999999999999999986      78999999999886543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.2e-10  Score=90.79  Aligned_cols=62  Identities=15%  Similarity=0.157  Sum_probs=53.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ..++||||||+|.+++.+|...|+.+++|+|+|+++++.|++|++..     +..+++.+++.+...
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n-----~l~~~~~~~~~~~~~  123 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-----NLSDLIKVVKVPQKT  123 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT-----TCTTTEEEEECCTTC
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHh-----CCCcceeeeeeccHH
Confidence            46899999999999999999999999999999999999999999885     233458887765543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.05  E-value=1.7e-10  Score=83.33  Aligned_cols=75  Identities=13%  Similarity=0.124  Sum_probs=60.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      +.+|||+|||+|.++++++.+.. .+|++||+++.+++.++++++..     +..++++++++|+..++..  ..+++|.
T Consensus        15 g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~-----~~~~~~~ii~~D~~~~l~~--~~~~fDi   86 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMT-----KAENRFTLLKMEAERAIDC--LTGRFDL   86 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTT-----TCGGGEEEECSCHHHHHHH--BCSCEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhc-----ccccchhhhcccccccccc--cccccce
Confidence            68999999999999999888754 49999999999999999999876     3335699999999887642  2334555


Q ss_pred             hHh
Q psy13087        136 CFA  138 (170)
Q Consensus       136 i~~  138 (170)
                      ||.
T Consensus        87 If~   89 (152)
T d2esra1          87 VFL   89 (152)
T ss_dssp             EEE
T ss_pred             eEe
Confidence            544

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=7.1e-11  Score=90.61  Aligned_cols=108  Identities=9%  Similarity=0.060  Sum_probs=87.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCC---Cchh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNY---FRKA  131 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~---f~~~  131 (170)
                      .++|||||||+|..++++|...| +.+++.+|++++..+.|+++++..     +..++++++.+|+.+.++..   ...+
T Consensus        60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a-----g~~~~i~~~~Gda~e~l~~~~~~~~~~  134 (219)
T d2avda1          60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA-----EAEHKIDLRLKPALETLDELLAAGEAG  134 (219)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-----TCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred             CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc-----CccceEEEEEeehhhcchhhhhhcccC
Confidence            57999999999999999999876 679999999999999999999886     34456999999998877544   2355


Q ss_pred             hhhhhHhhhcCCccccc-----hhhhcccccccChhhhhhccc
Q psy13087        132 QVRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKAQA  169 (170)
Q Consensus       132 ~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~  169 (170)
                      .+|-+|+.+-+ ..|.+     +.+++.+++...+|++..|.|
T Consensus       135 ~fD~ifiD~dk-~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v  176 (219)
T d2avda1         135 TFDVAVVDADK-ENCSAYYERCLQLLRPGGILAVLRVLWRGKV  176 (219)
T ss_dssp             CEEEEEECSCS-TTHHHHHHHHHHHEEEEEEEEEECCSGGGGG
T ss_pred             CccEEEEeCCH-HHHHHHHHHHHHHhcCCcEEEEeCCcccCcc
Confidence            68888885444 44433     578888888888888877765

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.04  E-value=6.4e-11  Score=91.38  Aligned_cols=108  Identities=15%  Similarity=0.186  Sum_probs=88.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCC----ch
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYF----RK  130 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f----~~  130 (170)
                      ..+||||||++|..++++|...| +.+++.+|++++..+.|++++++.     +..++|+++.+++.+.++.+.    ..
T Consensus        60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~-----g~~~~i~~~~g~a~~~L~~l~~~~~~~  134 (227)
T d1susa1          60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA-----GVDHKIDFREGPALPVLDEMIKDEKNH  134 (227)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT-----TCGGGEEEEESCHHHHHHHHHHCGGGT
T ss_pred             CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh-----ccccceeeeehHHHHHHHHHHhccccC
Confidence            57999999999999999998876 579999999999999999999886     334569999999998886543    24


Q ss_pred             hhhhhhHhhhcCCccccc-----hhhhcccccccChhhhhhccc
Q psy13087        131 AQVRRCFANCILNSQYEN-----IACIRTNAMKYLPNYFRKAQA  169 (170)
Q Consensus       131 ~~l~~i~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~  169 (170)
                      +.+|.||+-+ .+..|.+     +.+++.++....||++..|.|
T Consensus       135 ~~fD~iFiDa-~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v  177 (227)
T d1susa1         135 GSYDFIFVDA-DKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSV  177 (227)
T ss_dssp             TCBSEEEECS-CSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGG
T ss_pred             CceeEEEecc-chhhhHHHHHHHHhhcCCCcEEEEccCCCCCcc
Confidence            5688888854 4455543     688899999999999888765

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=4.7e-11  Score=94.44  Aligned_cols=101  Identities=11%  Similarity=0.153  Sum_probs=76.8

Q ss_pred             CccchhhhcccCCCCcCCCCCCCCCCCCCCccccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHH
Q psy13087         11 PQKRYYRQRAHSNPIADHSVEYPPSPNDMDWSPLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVK   90 (170)
Q Consensus        11 ~~k~~~~~r~~~~p~~~~~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~   90 (170)
                      +.+.||..+..++|..  .++.|.++...+|........     ...+|+|+|||+|..++.+++ +|+.+|+|+|+|++
T Consensus        73 g~~~F~~~~f~v~~~v--lIPRpeTE~lv~~~~~~~~~~-----~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~  144 (271)
T d1nv8a_          73 GEKEFMGLSFLVEEGV--FVPRPETEELVELALELIRKY-----GIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSK  144 (271)
T ss_dssp             TEEEETTEEEECCTTS--CCCCTTHHHHHHHHHHHHHHH-----TCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHH
T ss_pred             CcEEEeeeEEEEecCc--cCchhhhhhhhhhhhhhhccc-----cccEEEEeeeeeehhhhhhhh-cccceeeechhhhh
Confidence            7889999999998875  357777765555544322111     136899999999999999985 68899999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         91 VSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        91 ~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++..|++|++..     +...++.+..+|..+.+
T Consensus       145 Al~~A~~Na~~~-----~~~~~~~i~~~~~~~~~  173 (271)
T d1nv8a_         145 AVEIARKNAERH-----GVSDRFFVRKGEFLEPF  173 (271)
T ss_dssp             HHHHHHHHHHHT-----TCTTSEEEEESSTTGGG
T ss_pred             HHHHHHHHHHHc-----CCCceeEEeeccccccc
Confidence            999999999886     33345777777776544

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.03  E-value=1.6e-10  Score=90.76  Aligned_cols=65  Identities=11%  Similarity=0.188  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC-CeEEEEcchhhhcc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE-NIACIRTNAMKYLP  125 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~i~~d~~~~l~  125 (170)
                      .++.+|||+|||+|.+++.+|+.. .++|+++|+++.+++.+++|++..      ++. +|+++++|+.++.+
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n------~l~~~v~~~~~D~~~~~~  171 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLN------KVEDRMSAYNMDNRDFPG  171 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHT------TCTTTEEEECSCTTTCCC
T ss_pred             CCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHh------CCCceEEEEEcchHHhcc
Confidence            458999999999999999999874 568999999999999999999875      444 59999999987653

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.02  E-value=4.4e-10  Score=84.88  Aligned_cols=79  Identities=14%  Similarity=0.254  Sum_probs=59.8

Q ss_pred             CCCCCCCCC---Ccc-ccCCCCCCCCCCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcC
Q psy13087         31 EYPPSPNDM---DWS-PLYPELKDPTCEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQN  106 (170)
Q Consensus        31 ~~p~~~~~~---~w~-~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~  106 (170)
                      ||+|++...   -|. ...+...      +.+|||+|||+|.+++.++... ...|+|||+++.+++.|++|++..    
T Consensus        24 qy~Tp~~~a~~~~~~~~~~~dl~------g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~----   92 (201)
T d1wy7a1          24 QYRTPGNAASELLWLAYSLGDIE------GKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEF----   92 (201)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTSST------TCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGG----
T ss_pred             cCCCCHHHHHHHHHHHHhcCCCC------CCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHc----
Confidence            677776432   222 2344443      6899999999999999988764 358999999999999999998764    


Q ss_pred             CCCCCCeEEEEcchhhh
Q psy13087        107 KGQYENIACIRTNAMKY  123 (170)
Q Consensus       107 ~~~~~nv~~i~~d~~~~  123 (170)
                        + .++.++.+|+...
T Consensus        93 --~-~~~~~~~~d~~~~  106 (201)
T d1wy7a1          93 --K-GKFKVFIGDVSEF  106 (201)
T ss_dssp             --T-TSEEEEESCGGGC
T ss_pred             --C-CCceEEECchhhh
Confidence              3 3678888888764

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.01  E-value=2.4e-10  Score=87.94  Aligned_cols=61  Identities=20%  Similarity=0.335  Sum_probs=52.5

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +++.+|||||||+|.++..||+..  .+|+++|+++++++.|+++..        ...|+.++.+|.....
T Consensus        69 ~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~--------~~~nv~~~~~d~~~g~  129 (224)
T d1vbfa_          69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLS--------YYNNIKLILGDGTLGY  129 (224)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHT--------TCSSEEEEESCGGGCC
T ss_pred             cccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHh--------cccccccccCchhhcc
Confidence            457999999999999999999985  479999999999999988764        3479999999987643

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.00  E-value=3.4e-10  Score=88.18  Aligned_cols=60  Identities=15%  Similarity=0.027  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +..+|||+|||+|.++..++..+.. .|+|||+|+.|++.|+++..        ..++++++.+|+.++
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~--------~~~~~~~~~~d~~~~  152 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELA--------GMPVGKFILASMETA  152 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTT--------TSSEEEEEESCGGGC
T ss_pred             CCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhcccc--------ccccceeEEcccccc
Confidence            3579999999999999998876543 79999999999999998753        335788888888764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2e-10  Score=87.78  Aligned_cols=66  Identities=14%  Similarity=0.052  Sum_probs=51.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhc-----------CCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQ-----------NKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~-----------~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||+|||+|..+..||+.  +.+|+|||+|+.+|+.|+++.......           ......++.++++|+...
T Consensus        46 ~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l  122 (229)
T d2bzga1          46 GLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL  122 (229)
T ss_dssp             SCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred             CCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence            679999999999999999987  578999999999999998875421000           001225789999998754

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=4.9e-10  Score=83.31  Aligned_cols=74  Identities=22%  Similarity=0.272  Sum_probs=60.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      +.+|||++||+|.++++++.+.. ..|+.||+++++++.+++|++..      ...++.++.+|+..++...  ...+|.
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~------~~~~~~ii~~d~~~~l~~~--~~~fDl  114 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATL------KAGNARVVNSNAMSFLAQK--GTPHNI  114 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT------TCCSEEEECSCHHHHHSSC--CCCEEE
T ss_pred             hhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhc------cccceeeeeeccccccccc--ccccCE
Confidence            57999999999999999888754 48999999999999999999875      5678999999999887532  234555


Q ss_pred             hHh
Q psy13087        136 CFA  138 (170)
Q Consensus       136 i~~  138 (170)
                      ||.
T Consensus       115 If~  117 (183)
T d2fpoa1         115 VFV  117 (183)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=8.6e-10  Score=86.92  Aligned_cols=45  Identities=18%  Similarity=0.210  Sum_probs=40.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      +.+|||||||+|.++..+|+.  +.+|+|||+|++|++.|+++....
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~  101 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNR  101 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhc
Confidence            569999999999999999987  568999999999999999987653

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.91  E-value=1.2e-09  Score=83.71  Aligned_cols=70  Identities=16%  Similarity=0.176  Sum_probs=54.8

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhC------CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMF------PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~------p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +++.+|||||||+|.++..+|+..      +..+|++||+++++++.|++++....... ....||.++.+|.....
T Consensus        79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~-~~~~nv~~~~~d~~~~~  154 (223)
T d1r18a_          79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM-LDSGQLLIVEGDGRKGY  154 (223)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH-HHHTSEEEEESCGGGCC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhh-cCccEEEEEeccccccc
Confidence            457999999999999999999874      33589999999999999999875431100 13468999999987643

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=9.8e-10  Score=91.18  Aligned_cols=50  Identities=30%  Similarity=0.367  Sum_probs=45.3

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      +.++.+|||||||+|.+++.+|..++..+++|||+++.+++.|++++++.
T Consensus       214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~  263 (406)
T d1u2za_         214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEEL  263 (406)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence            34578999999999999999999988668999999999999999998764

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.88  E-value=1.4e-09  Score=87.48  Aligned_cols=62  Identities=15%  Similarity=0.146  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      ++.+|||++||+|.+++.+|..  ..+|+++|+|+.+++.|++|++..      +++|++++++|+.+++
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~n------gl~~~~~i~~d~~~~~  206 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLN------GLGNVRVLEANAFDLL  206 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHT------TCTTEEEEESCHHHHH
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHc------CCCCcceeeccHHHHh
Confidence            4789999999999999999865  458999999999999999999875      7789999999988754

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.85  E-value=7.8e-10  Score=82.55  Aligned_cols=37  Identities=24%  Similarity=0.440  Sum_probs=31.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +.+|||||||+|.++..++      .++|||+|+.|++.|+++
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~   73 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR   73 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT
T ss_pred             CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc
Confidence            4589999999999988774      368999999999998764

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.84  E-value=2.4e-09  Score=82.71  Aligned_cols=59  Identities=14%  Similarity=0.377  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++++|||||||+|.++..++...  .+|++||+++.+++.++++..        ..+|+.++++|+.++
T Consensus        21 ~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~--------~~~n~~i~~~D~l~~   79 (235)
T d1qama_          21 EHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLV--------DHDNFQVLNKDILQF   79 (235)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTT--------TCCSEEEECCCGGGC
T ss_pred             CCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhh--------cccchhhhhhhhhhc
Confidence            47899999999999999999874  579999999999999887653        347999999999975

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4e-09  Score=83.92  Aligned_cols=61  Identities=20%  Similarity=0.250  Sum_probs=48.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +++|||||||+|.+++.+|+..+ .+|+|+|.|+.+.. |++.+.+.     +..+++.++++|+.+.
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~-----~~~~~i~~~~~~~~~l   96 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLN-----KLEDTITLIKGKIEEV   96 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHT-----TCTTTEEEEESCTTTS
T ss_pred             cCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHh-----CCCccceEEEeeHHHh
Confidence            68999999999999999998754 58999999998865 45554443     3557899999988764

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=4.6e-09  Score=84.26  Aligned_cols=62  Identities=21%  Similarity=0.321  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ++.+|||||||+|.+++.+|+.. ...|+|+|.++ ++..|+++++..     +..+++.++++|+.+.
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~-~~~~a~~~~~~~-----~~~~~i~~i~~~~~~l   99 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSS-IIEMAKELVELN-----GFSDKITLLRGKLEDV   99 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESST-HHHHHHHHHHHT-----TCTTTEEEEESCTTTS
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCH-HHHHHHHHHHHh-----CccccceEEEeehhhc
Confidence            36899999999999999888874 35899999996 668888887765     4456799999987764

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.81  E-value=6.1e-09  Score=78.07  Aligned_cols=60  Identities=13%  Similarity=0.293  Sum_probs=53.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +..+||++||+|.++..+++.+|+..|+|+|.+++|++.|+++.+..       .+++.++++++.+
T Consensus        24 ~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-------~~r~~~~~~~f~~   83 (192)
T d1m6ya2          24 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------SDRVSLFKVSYRE   83 (192)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-------TTTEEEEECCGGG
T ss_pred             CCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-------cccccchhHHHhh
Confidence            68999999999999999999999999999999999999999998654       2579999987754

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=5.9e-09  Score=83.26  Aligned_cols=61  Identities=21%  Similarity=0.238  Sum_probs=48.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +.+|||||||+|.+++.+|+..+ .+|+|||.++.+ ..++++++..     +..++|.++++|+.+.
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~-~~a~~~~~~n-----~~~~~v~~~~~~~~~~   94 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSIS-DYAVKIVKAN-----KLDHVVTIIKGKVEEV   94 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTH-HHHHHHHHHT-----TCTTTEEEEESCTTTC
T ss_pred             cCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHH-hhhhhHHHHh-----CCccccceEeccHHHc
Confidence            68999999999999999998743 489999999764 6666666553     3446799999988764

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.79  E-value=4.4e-09  Score=77.27  Aligned_cols=45  Identities=13%  Similarity=0.087  Sum_probs=41.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      +.+|||+|||+|.++++++..  +++++++|+++.+++.+++|++..
T Consensus        42 g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~   86 (171)
T d1ws6a1          42 RGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRT   86 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhh
Confidence            679999999999999998877  457999999999999999999886

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.79  E-value=5.5e-09  Score=84.01  Aligned_cols=64  Identities=11%  Similarity=0.127  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC-CCeEEEEcchhhhc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY-ENIACIRTNAMKYL  124 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~i~~d~~~~l  124 (170)
                      .++.+|||+|||+|.+++.+|... ..+|+++|+|+.+++.|++|++..      ++ ++++++++|+.+.+
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~n------gl~~~~~~~~~d~~~~~  208 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLN------GVEDRMKFIVGSAFEEM  208 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT------TCGGGEEEEESCHHHHH
T ss_pred             CCCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHc------CCCccceeeechhhhhh
Confidence            457899999999999999999774 348999999999999999999875      44 57999999988754

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.77  E-value=8.8e-09  Score=76.41  Aligned_cols=64  Identities=16%  Similarity=0.123  Sum_probs=55.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      +.+|||++||+|.++++++.+.. ..|++||.+++++..+++|++..     +...++.++++|+..++.
T Consensus        42 ~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~-----~~~~~~~i~~~D~~~~l~  105 (182)
T d2fhpa1          42 GGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAIT-----KEPEKFEVRKMDANRALE  105 (182)
T ss_dssp             SCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHH-----TCGGGEEEEESCHHHHHH
T ss_pred             CCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhh-----hcccccccccccchhhhh
Confidence            68999999999999999998753 48999999999999999999887     334579999999988764

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.76  E-value=1.2e-08  Score=81.76  Aligned_cols=63  Identities=13%  Similarity=0.151  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCC--CeEEEEcchhhhcc
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYE--NIACIRTNAMKYLP  125 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~i~~d~~~~l~  125 (170)
                      ++.+|||++||+|.+++.+|..  +++|++||+|+.+++.|++|++..      ++.  +++++++|+.+++.
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln------~~~~~~~~~i~~D~~~~l~  196 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLA------GLEQAPIRWICEDAMKFIQ  196 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHH------TCTTSCEEEECSCHHHHHH
T ss_pred             CCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhh------cccCCcEEEEeCCHHHhHH
Confidence            4689999999999999999876  458999999999999999998775      333  59999999988753

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=7.1e-09  Score=80.81  Aligned_cols=45  Identities=16%  Similarity=0.204  Sum_probs=37.5

Q ss_pred             CeEEEEcCccchHHHHHhhh----CCC--CeEEEEECCHHHHHHHHHHHHH
Q psy13087         57 VEFVDVGCGYGGLLVTLSPM----FPS--TLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~----~p~--~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      .+|||||||+|.++..++..    +++  ..++|||+|+.|++.|+++++.
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~   92 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAK   92 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTT
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhh
Confidence            47999999999998877654    343  3689999999999999998754

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.9e-09  Score=81.47  Aligned_cols=46  Identities=11%  Similarity=-0.029  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      ++.+|||||||+|.++..++... ...|+|+|+|+.|++.|+++++.
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~   96 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKK   96 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhh
Confidence            36799999999999988887664 34799999999999999998764

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.8e-08  Score=81.28  Aligned_cols=76  Identities=13%  Similarity=0.169  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCC-chhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYF-RKAQV  133 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f-~~~~l  133 (170)
                      ++.+|||+-||.|.+++.||+..  .+|+|||+++++++.|++|++..      ++.|+.++.+++.+.+.... ....+
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n------~i~n~~~~~~~~~~~~~~~~~~~~~~  283 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLN------GLQNVTFYHENLEEDVTKQPWAKNGF  283 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCTTSCCSSSGGGTTCC
T ss_pred             CCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhc------ccccceeeecchhhhhhhhhhhhccC
Confidence            46899999999999999999874  47999999999999999998874      88999999999988765432 23334


Q ss_pred             hhhHh
Q psy13087        134 RRCFA  138 (170)
Q Consensus       134 ~~i~~  138 (170)
                      |.+++
T Consensus       284 d~vil  288 (358)
T d1uwva2         284 DKVLL  288 (358)
T ss_dssp             SEEEE
T ss_pred             ceEEe
Confidence            55544

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.60  E-value=5.2e-08  Score=78.09  Aligned_cols=65  Identities=6%  Similarity=0.034  Sum_probs=55.0

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCC--CCeEEEEcchhhhcc
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQY--ENIACIRTNAMKYLP  125 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~i~~d~~~~l~  125 (170)
                      .++.+|||++||+|.+++.++... ...|++||+|+.+++.|++|++..      ++  .+++++++|+.+++.
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n------~l~~~~~~~i~~d~~~~l~  209 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEAN------HLDMANHQLVVMDVFDYFK  209 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHT------TCCCTTEEEEESCHHHHHH
T ss_pred             hCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHh------cccCcceEEEEccHHHHHH
Confidence            347899999999999999988653 348999999999999999998764      43  579999999987764

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=4.8e-08  Score=76.01  Aligned_cols=59  Identities=14%  Similarity=0.219  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +++.|||||||+|.++..|++..  .+|++||+++.+++..+++..        ..+|+.++.+|+..+
T Consensus        21 ~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~--------~~~~~~ii~~D~l~~   79 (252)
T d1qyra_          21 KGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPF--------LGPKLTIYQQDAMTF   79 (252)
T ss_dssp             TTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTT--------TGGGEEEECSCGGGC
T ss_pred             CCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhh--------hccchhHHhhhhhhh
Confidence            36899999999999999999874  469999999999998876432        236899999999863

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.47  E-value=2.8e-09  Score=82.84  Aligned_cols=59  Identities=12%  Similarity=0.313  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +++.|||||||+|.++..+++..  .+|++||+++.+++.++++..        ..+|++++++|+.++
T Consensus        29 ~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~--------~~~n~~ii~~D~l~~   87 (245)
T d1yuba_          29 ETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK--------LNTRVTLIHQDILQF   87 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT--------TCSEEEECCSCCTTT
T ss_pred             CCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhh--------hccchhhhhhhhhcc
Confidence            36899999999999999999983  579999999999888766542        347899999999864

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.44  E-value=1.8e-07  Score=69.03  Aligned_cols=78  Identities=17%  Similarity=0.197  Sum_probs=59.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhhhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQVRR  135 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~l~~  135 (170)
                      +.+|||+-||+|.++++++.+.. ..|+.||.+..++...++|++.+..    ......++..|+..++........+|.
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~----~~~~~~~~~~d~~~~l~~~~~~~~fDl  118 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKC----SSEQAEVINQSSLDFLKQPQNQPHFDV  118 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTC----CTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred             cceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcc----cccccccccccccccccccccCCcccE
Confidence            57999999999999999998854 4899999999999999999988611    112467777888777654434445665


Q ss_pred             hHh
Q psy13087        136 CFA  138 (170)
Q Consensus       136 i~~  138 (170)
                      ||+
T Consensus       119 IFl  121 (183)
T d2ifta1         119 VFL  121 (183)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.2e-07  Score=73.19  Aligned_cols=62  Identities=16%  Similarity=0.211  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      +++.|||||+|.|.++..+++..  .+|++||+++.++...+++....     ....|+.++.+|+...
T Consensus        21 ~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~-----~~~~~~~~i~~D~l~~   82 (278)
T d1zq9a1          21 PTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGT-----PVASKLQVLVGDVLKT   82 (278)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTS-----TTGGGEEEEESCTTTS
T ss_pred             CCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhh-----ccccchhhhHHHHhhh
Confidence            36899999999999999999984  47999999999999998876542     1236899999999875

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.1e-07  Score=73.64  Aligned_cols=45  Identities=9%  Similarity=-0.074  Sum_probs=37.0

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVA  100 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~  100 (170)
                      ++.+|||||||+|.+....+.... .+|+|+|+|+.|++.++++++
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~   98 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQ   98 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHT
T ss_pred             CCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHh
Confidence            368999999999988765554443 379999999999999998764

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=2.1e-06  Score=64.64  Aligned_cols=63  Identities=24%  Similarity=0.268  Sum_probs=57.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYL  124 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l  124 (170)
                      +.+++|||||.|.=++-+|-.+|+.+++.+|.+..-+...++-++++      +++|+++++..+.+..
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L------~L~nv~v~~~R~E~~~  128 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL------KLENIEPVQSRVEEFP  128 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT------TCSSEEEEECCTTTSC
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHc------CCcceeeeccchhhhc
Confidence            46899999999999999999999999999999999999999988887      7889999998888753

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.23  E-value=3.7e-07  Score=72.87  Aligned_cols=69  Identities=13%  Similarity=0.083  Sum_probs=55.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+||.||.|.|..+.++.+..+..++++||+++++++.|++......... ..-++++++.+|+.+++.
T Consensus        78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~-~~d~rv~i~~~Da~~~l~  146 (312)
T d1uira_          78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGA-FDDPRAVLVIDDARAYLE  146 (312)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTG-GGCTTEEEEESCHHHHHH
T ss_pred             cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCc-cCCCceEEEEchHHHHhh
Confidence            479999999999999999988777799999999999999998764431100 023579999999988764

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.17  E-value=2.4e-06  Score=65.70  Aligned_cols=57  Identities=19%  Similarity=0.301  Sum_probs=46.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+|||||||+|.+++.+++++|+.+++.+|+ ++.++.       .     ...++|+++.+|..+.++
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~-----~~~~ri~~~~gd~~~~~p  138 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN-------A-----PPLSGIEHVGGDMFASVP  138 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------C-----CCCTTEEEEECCTTTCCC
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc-------c-----CCCCCeEEecCCcccccc
Confidence            57999999999999999999999999999998 443321       1     245789999999876544

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.16  E-value=2.9e-06  Score=65.18  Aligned_cols=57  Identities=19%  Similarity=0.326  Sum_probs=46.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+|||||||+|.++..+++++|+.+++..|+ ++.++.+            +..++|+++.+|..+..+
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~------------~~~~rv~~~~gD~f~~~p  137 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL------------SGSNNLTYVGGDMFTSIP  137 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC------------CCBTTEEEEECCTTTCCC
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC------------cccCceEEEecCcccCCC
Confidence            46899999999999999999999999999998 4443321            244789999999876544

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.08  E-value=1.3e-06  Score=69.15  Aligned_cols=68  Identities=13%  Similarity=0.075  Sum_probs=55.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+||-||.|.|..+.++.+..+..++++|||++++++.|++.........  .-++++++.+|+.+++.
T Consensus        90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~--~d~rv~v~~~Da~~~l~  157 (295)
T d1inla_          90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF--DDPRAEIVIANGAEYVR  157 (295)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG--GCTTEEEEESCHHHHGG
T ss_pred             CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccc--cCCCcEEEhhhHHHHHh
Confidence            579999999999999999987777799999999999999998654321100  13679999999998875

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.02  E-value=1.6e-06  Score=67.81  Aligned_cols=69  Identities=14%  Similarity=0.163  Sum_probs=51.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHh----hcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALR----SQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~----~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+||-||+|.|..+.++.+. +..++++|||++++++.|++-.....    .......++++++.+|+..++.
T Consensus        73 p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~  145 (276)
T d1mjfa_          73 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK  145 (276)
T ss_dssp             CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             CceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh
Confidence            579999999999999998864 55689999999999999986431100    0001134689999999987764

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.00  E-value=8.3e-06  Score=62.30  Aligned_cols=57  Identities=18%  Similarity=0.366  Sum_probs=45.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+|||||||+|.+++.+++.+|+.+++++|+.+. ++.+            ...++++++.+|..+.+|
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~------------~~~~r~~~~~~d~~~~~P  138 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA------------PSYPGVEHVGGDMFVSIP  138 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC------------CCCTTEEEEECCTTTCCC
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc------------ccCCceEEecccccccCC
Confidence            46899999999999999999999999999998653 2211            234689999998876554

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.97  E-value=1.4e-05  Score=61.29  Aligned_cols=62  Identities=23%  Similarity=0.237  Sum_probs=56.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKY  123 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~  123 (170)
                      ..+++|||+|.|.=++-+|-.+|+.+++.+|.+..-+...+.-++++      +++|+.++++.++.+
T Consensus        71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L------~L~n~~i~~~R~E~~  132 (239)
T d1xdza_          71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL------QLENTTFCHDRAETF  132 (239)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH------TCSSEEEEESCHHHH
T ss_pred             CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh------CCCCcEEEeehhhhc
Confidence            46899999999999999999999999999999999999999988888      789999999888754

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.4e-05  Score=62.81  Aligned_cols=79  Identities=11%  Similarity=0.091  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhccCCCchhh
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLPNYFRKAQ  132 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~~~f~~~~  132 (170)
                      +++.+|||++||.|.=+..+|... +...++++|+++.-+...+++++++      +..|+.+...|....-+..-..+.
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~------g~~~~~~~~~d~~~~~~~~~~~~~  166 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA------GVSCCELAEEDFLAVSPSDPRYHE  166 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCGGGSCTTCGGGTT
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhc------Cccceeeeehhhhhhcccccccce
Confidence            457899999999999888888753 4568999999999999999999987      788999999988764332212244


Q ss_pred             hhhhHh
Q psy13087        133 VRRCFA  138 (170)
Q Consensus       133 l~~i~~  138 (170)
                      +|.|+.
T Consensus       167 fD~VL~  172 (293)
T d2b9ea1         167 VHYILL  172 (293)
T ss_dssp             EEEEEE
T ss_pred             eeEEee
Confidence            666665

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.87  E-value=7.4e-06  Score=63.98  Aligned_cols=68  Identities=13%  Similarity=0.140  Sum_probs=55.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+||-||-|.|..+.++.+..+..+++.|||++++++.|++-.......  -.-+++.++.+|+..++.
T Consensus        76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~--~~d~r~~i~~~D~~~~l~  143 (274)
T d1iy9a_          76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK--LDDPRVDVQVDDGFMHIA  143 (274)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT--TTSTTEEEEESCSHHHHH
T ss_pred             cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhccc--ccCCCeEEEechHHHHHh
Confidence            47999999999999999998767679999999999999999876432110  123679999999988765

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.86  E-value=1.2e-05  Score=63.57  Aligned_cols=47  Identities=17%  Similarity=0.222  Sum_probs=39.7

Q ss_pred             CCeEEEEcCccchHHHHHhhh-----CCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPM-----FPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~-----~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      +.+|||.|||+|.+++.+...     .+...++|+|+++.++..|+.+....
T Consensus       118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~  169 (328)
T d2f8la1         118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ  169 (328)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh
Confidence            578999999999999998653     23458999999999999999887664

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.81  E-value=1.3e-05  Score=63.02  Aligned_cols=68  Identities=16%  Similarity=0.139  Sum_probs=54.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+||=||-|.|..+.++.+..+..++++|||++++++.|++-.......  ..-++++++.+|+..++.
T Consensus        81 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~--~~~~r~~i~~~Da~~~l~  148 (290)
T d1xj5a_          81 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIG--YEDPRVNLVIGDGVAFLK  148 (290)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG--GGSTTEEEEESCHHHHHH
T ss_pred             CcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhcc--ccCCCcEEEEccHHHHHh
Confidence            57999999999999999998777668999999999999999865432110  123679999999888774

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=9e-06  Score=63.85  Aligned_cols=68  Identities=12%  Similarity=0.139  Sum_probs=55.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+||=||-|.|..+.++.+..+..++++|||++++++.|++-.......  -.-++++++.+|+..++.
T Consensus        79 pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~--~~d~rv~i~~~Da~~~l~  146 (285)
T d2o07a1          79 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIG--YSSSKLTLHVGDGFEFMK  146 (285)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG--GGCTTEEEEESCHHHHHH
T ss_pred             cCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccc--cCCCCceEEEccHHHHHh
Confidence            57899999999999999998766779999999999999999876432111  123689999999998875

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.65  E-value=8.7e-05  Score=54.34  Aligned_cols=56  Identities=13%  Similarity=0.125  Sum_probs=46.5

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++..++|..||.|..+..+...  +.+|+|+|++++++..|++.          ..+++.+++.+..+
T Consensus        18 ~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~----------~~~~~~~~~~~f~~   73 (182)
T d1wg8a2          18 PGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL----------HLPGLTVVQGNFRH   73 (182)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----------CCTTEEEEESCGGG
T ss_pred             CCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc----------cccceeEeehHHHH
Confidence            3689999999999999999886  45899999999999888753          23678888877664

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=5.6e-05  Score=60.04  Aligned_cols=58  Identities=10%  Similarity=0.134  Sum_probs=47.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +..|||||.|.|.++..+.......++++||+++..+...++..         ..+|+.++++|+..
T Consensus        44 ~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~---------~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          44 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF---------EGSPLQILKRDPYD  101 (322)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT---------TTSSCEEECSCTTC
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc---------cCCCcEEEeCchhh
Confidence            57899999999999999988743348999999999999877653         22579999998864

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.61  E-value=9.6e-06  Score=64.49  Aligned_cols=68  Identities=15%  Similarity=0.140  Sum_probs=53.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhhhcc
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMKYLP  125 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~~l~  125 (170)
                      ..+||-||-|.|..+.++.+..+..++++|||++++++.|++-.......  -.-++++++.+|+.+++.
T Consensus       107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~--~~dprv~i~i~Da~~~l~  174 (312)
T d2b2ca1         107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCG--FSHPKLDLFCGDGFEFLK  174 (312)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGG--GGCTTEEEECSCHHHHHH
T ss_pred             CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccc--cCCCCeEEEEchHHHHHH
Confidence            57899999999999999998766668999999999999999865321000  023679999999988764

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.52  E-value=4.5e-05  Score=58.71  Aligned_cols=70  Identities=19%  Similarity=0.167  Sum_probs=55.2

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCC---CCCCeEEEEcchhhhccCC
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKG---QYENIACIRTNAMKYLPNY  127 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~---~~~nv~~i~~d~~~~l~~~  127 (170)
                      .++|||.=||.|.-++.+|..  +++|+++|.++.+....+..++........   ...|++++++|+.+++.+.
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~  161 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI  161 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred             CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc
Confidence            468999999999999999988  467999999999988888777654321100   1247999999999988654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.50  E-value=0.00021  Score=57.90  Aligned_cols=47  Identities=11%  Similarity=-0.027  Sum_probs=42.8

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      +.+|||..||+|..++..|...+...|+..|+|+++++.+++|++..
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN   92 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLN   92 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhc
Confidence            57999999999999999888777678999999999999999999765

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.46  E-value=3.5e-05  Score=56.72  Aligned_cols=41  Identities=20%  Similarity=0.314  Sum_probs=33.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCC-CeEEEEECCHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPS-TLILGLEIRVKVSDYV   95 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~-~~v~GvDis~~~i~~a   95 (170)
                      ++.+|||.|||+|.++..+.+..+. ..++|+|+++.++..+
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~   60 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP   60 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc
Confidence            3679999999999999998876554 5799999999875543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.41  E-value=2.7e-05  Score=59.34  Aligned_cols=55  Identities=16%  Similarity=0.230  Sum_probs=41.1

Q ss_pred             CCeEEEEcCccchHHHHHhhh----CCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPM----FPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM  121 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~----~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~  121 (170)
                      +.+|||||++.|..++.+|..    .++.+++|+|+++.....+.           ...++|+++++|..
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----------~~~~~I~~i~gDs~  139 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----------SDMENITLHQGDCS  139 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----------GGCTTEEEEECCSS
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----------ccccceeeeecccc
Confidence            578999999999988877753    35679999999876433211           13478999998865

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=7.6e-05  Score=58.19  Aligned_cols=61  Identities=13%  Similarity=0.190  Sum_probs=52.3

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcch
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNA  120 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~  120 (170)
                      .++.+|||+++|.|.=+..+|....+..++++|+++.-+...+++++++      +..++.+...|.
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~------g~~~~~~~~~~~  161 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL------GMKATVKQGDGR  161 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT------TCCCEEEECCTT
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcc------cccceeeecccc
Confidence            4578999999999999999998877789999999999999999999887      667776655443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00071  Score=49.11  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=29.8

Q ss_pred             CCCeEEEEcCccchHHHHHhhhC-CCCeEEEEECCH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMF-PSTLILGLEIRV   89 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~-p~~~v~GvDis~   89 (170)
                      ++..||||||+.|.++..+++.. +...++|+|+.+
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~   57 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeeccc
Confidence            36899999999999999988764 446899999876

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.98  E-value=0.0019  Score=50.68  Aligned_cols=64  Identities=11%  Similarity=0.134  Sum_probs=54.2

Q ss_pred             CCCCCeEEEEcCccchHHHHHhhhCC-CCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         53 CEKKVEFVDVGCGYGGLLVTLSPMFP-STLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        53 ~~~~~~vLDiGCG~G~~~~~la~~~p-~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      .+++.+|||++||.|.=+..++.... ...++++|+++.-+...+++++++      +..|+.+...|...
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~------~~~~i~~~~~d~~~  178 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL------GVLNVILFHSSSLH  178 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH------TCCSEEEESSCGGG
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHH------Hhhccccccccccc
Confidence            35688999999999998888887654 568999999999999999999987      66888888877664

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.94  E-value=0.00075  Score=50.21  Aligned_cols=45  Identities=9%  Similarity=0.087  Sum_probs=40.5

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVA  100 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~  100 (170)
                      .++..|||-=||+|..+.++.+.  +.+++|+|++++.++.|+++++
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHc
Confidence            45799999999999999987776  5789999999999999999975

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.82  E-value=0.00084  Score=48.98  Aligned_cols=43  Identities=9%  Similarity=0.062  Sum_probs=31.8

Q ss_pred             CCeEEEEcCccchHHHH----HhhhC----CCCeEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVT----LSPMF----PSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~----la~~~----p~~~v~GvDis~~~i~~a~~~   98 (170)
                      .-+|+++|||+|.=...    +....    ...+++|.|+++.+++.|++.
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g   75 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG   75 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcC
Confidence            46899999999994333    33221    234799999999999999843

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.64  E-value=0.0018  Score=48.63  Aligned_cols=47  Identities=11%  Similarity=0.034  Sum_probs=42.4

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      .++..|||-=||+|..+.++.+.  +.+++|+|++++.++.|+++++..
T Consensus       206 ~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         206 HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             CCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            45799999999999999998887  578999999999999999999764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.59  E-value=0.0011  Score=50.54  Aligned_cols=45  Identities=16%  Similarity=0.020  Sum_probs=40.0

Q ss_pred             CCCCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVA  100 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~  100 (170)
                      .++..|||.=||+|..+.++...  +.+++|+|++++.++.|++++.
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~  293 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFL  293 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGS
T ss_pred             cCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHH
Confidence            45799999999999999997777  6789999999999999988864

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.21  E-value=0.0014  Score=50.04  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=28.6

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCCCeEEEEECC
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIR   88 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis   88 (170)
                      +...|+|||||.|.++..++...+...+.|+++-
T Consensus        66 ~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG   99 (257)
T d2p41a1          66 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG   99 (257)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             CCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence            3578999999999999999988655678888883

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.16  E-value=0.004  Score=50.44  Aligned_cols=47  Identities=19%  Similarity=0.258  Sum_probs=39.0

Q ss_pred             CCeEEEEcCccchHHHHHhhhCC-------------CCeEEEEECCHHHHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFP-------------STLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p-------------~~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      +.+|+|-+||+|.|++.+.+...             ...+.|+|+++.++..|+.+..-+
T Consensus       163 ~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~  222 (425)
T d2okca1         163 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH  222 (425)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT
T ss_pred             cceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhc
Confidence            57999999999999999877532             135999999999999999887543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.12  E-value=0.0066  Score=44.06  Aligned_cols=45  Identities=7%  Similarity=0.024  Sum_probs=38.2

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +++.+||-+|||. |.++..+|+......|+++|.+++.++.|++.
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            3578999999998 66788888887777999999999999988764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.11  E-value=0.012  Score=41.18  Aligned_cols=43  Identities=12%  Similarity=0.083  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCc-cchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCG-YGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        55 ~~~~vLDiGCG-~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      ++.+||-+||| .|.+++.+|+.. +++++++|.+++.++.|++-
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH
T ss_pred             CCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhcc
Confidence            47899999999 677888888875 57999999999988887653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.96  E-value=0.026  Score=39.77  Aligned_cols=43  Identities=12%  Similarity=0.040  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      ++.+||=+|||. |.+++.+|+.....+|+++|.+++.++.|++
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence            478999999985 7788899988753489999999999988864

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=94.72  E-value=0.015  Score=48.29  Aligned_cols=47  Identities=15%  Similarity=0.221  Sum_probs=37.9

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCC------------------CCeEEEEECCHHHHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFP------------------STLILGLEIRVKVSDYVIDRVAA  101 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p------------------~~~v~GvDis~~~i~~a~~~~~~  101 (170)
                      ++.+|+|-.||+|.|++.+.+...                  ...++|+|+++.++..|+.++--
T Consensus       164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l  228 (524)
T d2ar0a1         164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL  228 (524)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred             cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh
Confidence            367999999999999998766421                  12589999999999999888653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.71  E-value=0.039  Score=38.21  Aligned_cols=43  Identities=9%  Similarity=0.141  Sum_probs=35.2

Q ss_pred             CCCeEEEEcCc-cchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCG-YGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        55 ~~~~vLDiGCG-~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      ++.+||=+||| .|.+++.+|+.. +++|+++|.+++-++.|++.
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT
T ss_pred             CCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHc
Confidence            46789999999 566777888776 57999999999998888753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.34  E-value=0.042  Score=36.73  Aligned_cols=47  Identities=17%  Similarity=0.192  Sum_probs=34.4

Q ss_pred             CccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         64 CGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        64 CG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ||.|.++..+++..  .+..|+.||.+++.++.+.++            -++.++.+|+.+
T Consensus         6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~------------~~~~vi~Gd~~~   54 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE------------IDALVINGDCTK   54 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH------------CSSEEEESCTTS
T ss_pred             ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh------------hhhhhccCcccc
Confidence            55688888888754  356899999999988876543            146778888764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.05  E-value=0.048  Score=38.39  Aligned_cols=43  Identities=16%  Similarity=0.102  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      ++.+||=+|||. |.+++.+|+.....+|+++|.+++-++.|++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence            467888899997 8888999987654579999999998888864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.85  E-value=0.054  Score=38.20  Aligned_cols=45  Identities=11%  Similarity=0.028  Sum_probs=37.9

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +++.+||=+|||. |.+++.+|+......|+.+|.+++-.+.|++-
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            3478999999998 88999999988766899999999988777653

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=93.72  E-value=0.067  Score=42.88  Aligned_cols=48  Identities=15%  Similarity=0.102  Sum_probs=41.2

Q ss_pred             CCCeEEEEcCccchHHHHHhhhCCC--CeEEEEECCHHHHHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGGLLVTLSPMFPS--TLILGLEIRVKVSDYVIDRVAAL  102 (170)
Q Consensus        55 ~~~~vLDiGCG~G~~~~~la~~~p~--~~v~GvDis~~~i~~a~~~~~~~  102 (170)
                      ++..++|||+=.|.++..++...++  .+|+++|-++...+..+++++..
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n  261 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY  261 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            4689999999999999888776543  58999999999999999998754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.39  E-value=0.043  Score=36.53  Aligned_cols=46  Identities=11%  Similarity=0.211  Sum_probs=37.0

Q ss_pred             CccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         64 CGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        64 CG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ||+|.++..+++...+..++.||.+++.++.+..             .++.++.+|+.+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-------------~~~~~i~Gd~~~   51 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR-------------SGANFVHGDPTR   51 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH-------------TTCEEEESCTTS
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh-------------cCccccccccCC
Confidence            7889999999998877789999999998765432             257888888764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.43  Score=35.22  Aligned_cols=61  Identities=10%  Similarity=0.029  Sum_probs=44.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|=.|++.|. +..+|+.+  .+.+|++.+.+++.++.+.+.++..     +.-.++.++++|+.+
T Consensus        10 ~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~-----~~~~~~~~~~~Dls~   72 (257)
T d1xg5a_          10 DRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSA-----GYPGTLIPYRCDLSN   72 (257)
T ss_dssp             TCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----TCSSEEEEEECCTTC
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEEEccCCC
Confidence            6789999988665 44444443  3679999999999999988887764     222468888898874

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=92.61  E-value=0.02  Score=43.31  Aligned_cols=62  Identities=21%  Similarity=0.241  Sum_probs=43.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCC----------------------------------------CeEEEEECCHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPS----------------------------------------TLILGLEIRVKVSDYV   95 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~----------------------------------------~~v~GvDis~~~i~~a   95 (170)
                      +..++|--||+|.+.+++|...-+                                        ..++|.|+++.+++.|
T Consensus        51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A  130 (249)
T d1o9ga_          51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  130 (249)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence            357999999999999998874211                                        2356888888888887


Q ss_pred             H---HHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         96 I---DRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        96 ~---~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      +   +|++..     +...-|.+.++|+.+
T Consensus       131 ~~~r~n~~~A-----gl~~~i~i~~~d~f~  155 (249)
T d1o9ga_         131 RRLRERLTAE-----GGALPCAIRTADVFD  155 (249)
T ss_dssp             HHHHHHHHHT-----TSSCCEEEEECCTTC
T ss_pred             HHHHHHHHHc-----CCCceeeeeecchhc
Confidence            4   455544     233458888888653

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.032  Score=42.58  Aligned_cols=43  Identities=9%  Similarity=0.235  Sum_probs=33.5

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCC-eEEEEECCHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPST-LILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~-~v~GvDis~~~i~~a~~~   98 (170)
                      ..+|+|+-||.|.+...+....=+. -+.++|+++.+++.-+.|
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n   45 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN   45 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH
Confidence            3689999999999988886653222 367999999998877665

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.15  E-value=0.14  Score=35.99  Aligned_cols=45  Identities=13%  Similarity=0.141  Sum_probs=36.1

Q ss_pred             CCCCeEEEEcCccch-HHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGG-LLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~-~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +++..||=+|||... +++.+++.....+|+++|++++-++.|++.
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            357899999998654 666677776556999999999999988765

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.49  E-value=0.18  Score=34.77  Aligned_cols=44  Identities=14%  Similarity=0.030  Sum_probs=34.4

Q ss_pred             CCCCeEEEEcCccch-HHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGG-LLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~-~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||=+|||.+. ++..+++......|+++|.+++-++.|++
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            357899999999854 55556666666789999999998887765

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.35  E-value=0.4  Score=32.86  Aligned_cols=43  Identities=7%  Similarity=0.089  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCccch-HHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGG-LLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        55 ~~~~vLDiGCG~G~-~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      ++..||=+|||... ++..+++.....+|+++|.+++-++.|++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~   69 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE   69 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH
Confidence            46789999997654 66666766654589999999999888865

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.98  E-value=0.35  Score=33.27  Aligned_cols=42  Identities=17%  Similarity=0.179  Sum_probs=34.5

Q ss_pred             CCCeEEEEcC--ccchHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         55 KKVEFVDVGC--GYGGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        55 ~~~~vLDiGC--G~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      ++.+||=.|+  |.|..++.+|+.. ++++++++.+++..+.+++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEEecccccccccccccccc-Ccccccccccccccccccc
Confidence            4789999996  6778889999886 5799999999887777654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.82  E-value=0.27  Score=33.92  Aligned_cols=45  Identities=13%  Similarity=0.089  Sum_probs=35.5

Q ss_pred             CCCCeEEEEcCccch-HHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGG-LLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~-~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +++++||=+|+|-+. +.+.+++......|+++|.+++-.+.+++.
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            357899999996544 666777777667999999999998887654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.35  E-value=0.37  Score=32.85  Aligned_cols=41  Identities=24%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             eEEEEcCcc-ch-HHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         58 EFVDVGCGY-GG-LLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        58 ~vLDiGCG~-G~-~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +|+=||||. |. ++..+.+.....+|+|+|.+++.++.|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~   45 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL   45 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh
Confidence            466789986 44 444555555567899999999999988765

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.27  E-value=0.28  Score=34.11  Aligned_cols=45  Identities=13%  Similarity=0.045  Sum_probs=35.3

Q ss_pred             CCCCeEEEEcCccch-HHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGYGG-LLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        54 ~~~~~vLDiGCG~G~-~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +++++||=+|||... +++.+++.....+|+++|++++-++.|++.
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            357899999998655 556667766556899999999999888653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=89.04  E-value=1.5  Score=32.11  Aligned_cols=58  Identities=10%  Similarity=0.028  Sum_probs=42.7

Q ss_pred             CCeEEEEcCccch---HHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGG---LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~---~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++|=.|+..|.   ++..+++.  +++|+.++.+++.++.+.+.+...      + .++.++.+|+.+
T Consensus         6 gK~alITGas~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~~~~~~~------~-~~~~~~~~D~s~   66 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREK------G-LNVEGSVCDLLS   66 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------T-CCEEEEECCTTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc------C-CCceEEEeecCC
Confidence            6789999987653   33344443  678999999999888888777653      2 568888888864

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=88.54  E-value=0.35  Score=32.61  Aligned_cols=55  Identities=9%  Similarity=-0.002  Sum_probs=34.6

Q ss_pred             CeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         57 VEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        57 ~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      .+|+=+|+  |.++..+++..  .+..++.||.+++......+...         ..++.++.+|+.+
T Consensus         4 nHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~---------~~~~~vi~Gd~~d   60 (153)
T d1id1a_           4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---------GDNADVIPGDSND   60 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---------CTTCEEEESCTTS
T ss_pred             CEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh---------cCCcEEEEccCcc
Confidence            45555555  66666666642  35689999999875443333321         2468888888765

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.83  E-value=1.6  Score=31.79  Aligned_cols=58  Identities=9%  Similarity=0.074  Sum_probs=44.6

Q ss_pred             CCeEEEEcCccch---HHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGG---LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~---~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|=-|++.|.   ++..+|+.  +.+|+.+|++++.++...+++...       ..++..+.+|..+
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~~-------~~~~~~~~~Dvs~   67 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGL-------GAKVHTFVVDCSN   67 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-------TCCEEEEECCTTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-------CCcEEEEEeeCCC
Confidence            6778888888775   44455544  678999999999999888888653       2578889998875

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.68  E-value=0.53  Score=32.05  Aligned_cols=44  Identities=18%  Similarity=0.385  Sum_probs=34.8

Q ss_pred             CCCeEEEEcC--ccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         55 KKVEFVDVGC--GYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        55 ~~~~vLDiGC--G~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      ++.+||=+||  |.|.+++.+++......|+++|.+++-++.+++.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence            4689999997  3566677777776657999999999988888753

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.41  E-value=1.3  Score=32.81  Aligned_cols=60  Identities=10%  Similarity=0.109  Sum_probs=42.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++|=.|+..| ++.++|+.+  .+.+|+.+|.+++.++.+.+++...      .-.++.++.+|..+
T Consensus        25 gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~------~g~~~~~~~~D~~~   86 (294)
T d1w6ua_          25 GKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ------TGNKVHAIQCDVRD   86 (294)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH------HSSCEEEEECCTTC
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh------cCCceEEEEecccC
Confidence            688999998776 444444332  2579999999999888877776543      22467888888764

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=87.05  E-value=0.55  Score=35.24  Aligned_cols=43  Identities=16%  Similarity=0.209  Sum_probs=35.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~~   99 (170)
                      +.+|||+=||.|.+...+.... -..+.++|+++.+++.-+.|.
T Consensus        11 ~lrv~~lFsG~Gg~~~gl~~aG-~~~v~a~e~d~~a~~~~~~N~   53 (327)
T d2c7pa1          11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHH
T ss_pred             CCeEEEECccccHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHC
Confidence            5899999999999999987663 225677999999999887775

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=86.92  E-value=0.39  Score=37.50  Aligned_cols=44  Identities=14%  Similarity=0.214  Sum_probs=32.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhC-------CCCeEEEEECCHHHHHHHHHHH
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF-------PSTLILGLEIRVKVSDYVIDRV   99 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~-------p~~~v~GvDis~~~i~~a~~~~   99 (170)
                      .-.|||+|+|+|.++.-+....       ....++-||.|+.+...-++++
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l  130 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  130 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh
Confidence            3579999999999987665542       2346899999999766655543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=86.78  E-value=0.75  Score=34.07  Aligned_cols=40  Identities=15%  Similarity=0.114  Sum_probs=32.3

Q ss_pred             eEEEEcCccchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         58 EFVDVGCGYGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +|||+=||.|.+...+-... -..+.++|+++.+++.-+.|
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG-~~~~~a~e~d~~a~~~~~~N   41 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESN   41 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHT-CEEEEEEECCHHHHHHHHHH
T ss_pred             eEEEeCcCcCHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHH
Confidence            69999999999998887763 22466999999988877665

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=86.63  E-value=0.77  Score=31.40  Aligned_cols=43  Identities=16%  Similarity=0.220  Sum_probs=33.6

Q ss_pred             CCCeEEEEcCccch-HHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGG-LLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        55 ~~~~vLDiGCG~G~-~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      ++..||=+|||... +++.+++......++++|.+++-++.+++
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~   75 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER   75 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh
Confidence            46889999998765 44677776666689999999988777764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=86.41  E-value=2.3  Score=30.99  Aligned_cols=60  Identities=10%  Similarity=0.026  Sum_probs=43.6

Q ss_pred             CCeEEEEcCccch---HHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGG---LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~---~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|=.|++.|.   ++..+++.  +++|+.+|++++.++.+.+.+...     ..-.++..+.+|+.+
T Consensus         4 gK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~~~~~-----~~~~~~~~~~~Dvt~   66 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASKAAVLET-----APDAEVLTTVADVSD   66 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH-----CTTCCEEEEECCTTS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhh-----CCCCeEEEEeccCCC
Confidence            5778888987764   34445544  678999999999988887777654     223468888888764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=86.39  E-value=0.15  Score=33.71  Aligned_cols=33  Identities=12%  Similarity=0.144  Sum_probs=25.4

Q ss_pred             CccchHHHHHhhhC--CCCeEEEEECCHHHHHHHH
Q psy13087         64 CGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVI   96 (170)
Q Consensus        64 CG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~   96 (170)
                      ||.|.++..+|+..  .+..|+.+|.+++.++.++
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~   40 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA   40 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH
Confidence            46678887777654  3568999999999988764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=86.27  E-value=0.76  Score=31.29  Aligned_cols=43  Identities=12%  Similarity=0.108  Sum_probs=34.1

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      +++.+||=+|||. |.+++.+|+.. +++++++|.+++-.+.+++
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~   72 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA   72 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhc
Confidence            3478888899975 66888888876 5788899999998777654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.70  E-value=0.93  Score=30.60  Aligned_cols=42  Identities=12%  Similarity=0.073  Sum_probs=33.0

Q ss_pred             CCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        55 ~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      ++.+||=+|||. |.+++.+++.. +.+|+++|.+++-++.+++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARK   69 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhc
Confidence            367788899986 55667777776 4799999999998887764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=85.69  E-value=2.2  Score=31.21  Aligned_cols=58  Identities=14%  Similarity=0.098  Sum_probs=40.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|=.|++.|. +..+|+.+  .+++|+.+|++++.++.+.+.+.        ...++.++.+|+.+
T Consensus         6 gKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~--------~~~~~~~~~~Dv~~   65 (268)
T d2bgka1           6 DKVAIITGGAGGI-GETTAKLFVRYGAKVVIADIADDHGQKVCNNIG--------SPDVISFVHCDVTK   65 (268)
T ss_dssp             TCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--------CTTTEEEEECCTTC
T ss_pred             CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc--------CCCceEEEEccCCC
Confidence            6788889977664 44444433  36799999999998777666553        23468888888764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.16  E-value=1  Score=30.86  Aligned_cols=44  Identities=16%  Similarity=0.223  Sum_probs=34.1

Q ss_pred             CCCeEEEEcCccch-HHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGG-LLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        55 ~~~~vLDiGCG~G~-~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      ++.+||=+|||.-. ++..+|+......++++|.+++-++.|++-
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~   72 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL   72 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc
Confidence            47889999998644 667777776666889999999988887653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.10  E-value=1.8  Score=31.76  Aligned_cols=62  Identities=6%  Similarity=-0.038  Sum_probs=42.7

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++|=.|++.|. +..+|+.+  .+++|+.+|.+++.++.+.+.+++.    ...-.++..+.+|+.+
T Consensus         5 gK~alVTGas~GI-G~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~----~~~~~~~~~~~~Dvs~   68 (272)
T d1xkqa_           5 NKTVIITGSSNGI-GRTTAILFAQEGANVTITGRSSERLEETRQIILKS----GVSEKQVNSVVADVTT   68 (272)
T ss_dssp             TCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----TCCGGGEEEEECCTTS
T ss_pred             CCEEEEeCcCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCCCCceEEEEccCCC
Confidence            6778888877653 33333332  2679999999999998888887653    0112368888888764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=83.97  E-value=2.7  Score=30.60  Aligned_cols=58  Identities=12%  Similarity=0.008  Sum_probs=42.4

Q ss_pred             CCeEEEEcCccch---HHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGG---LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~---~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|=.|.+.|.   ++..+++.  +++|+.+|++++.++.+.+.++..      + .++..+.+|+.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~------g-~~~~~~~~Dv~~   65 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEASVREK------G-VEARSYVCDVTS   65 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTT------T-SCEEEEECCTTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc------C-CcEEEEEccCCC
Confidence            6788888876654   33444444  678999999999998888877653      2 468888888764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.92  E-value=1.3  Score=29.68  Aligned_cols=42  Identities=12%  Similarity=0.050  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCccch-HHHHHhhhCCCCeEEEEECCHHHHHHHHH
Q psy13087         55 KKVEFVDVGCGYGG-LLVTLSPMFPSTLILGLEIRVKVSDYVID   97 (170)
Q Consensus        55 ~~~~vLDiGCG~G~-~~~~la~~~p~~~v~GvDis~~~i~~a~~   97 (170)
                      ++.+||=.|||.-. +.+.+++. .+.+|+++|.+++-++.+++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhh
Confidence            46788889998755 44555555 45689999999998888765

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.35  E-value=2.8  Score=30.38  Aligned_cols=59  Identities=7%  Similarity=-0.004  Sum_probs=41.3

Q ss_pred             CCeEEEEcCccch---HHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGG---LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~---~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++|=.|.+.|.   ++..+++.  +++|+.+|++++.++.+.+.+.+.      .-.++..+.+|+.+
T Consensus         5 gK~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~------~g~~~~~~~~Dv~~   66 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEK------YGVETMAFRCDVSN   66 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH------HCCCEEEEECCTTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHH------hCCcEEEEEccCCC
Confidence            6788889987664   33344444  678999999999888777666443      12468888888764

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.29  E-value=2.7  Score=30.63  Aligned_cols=58  Identities=7%  Similarity=-0.056  Sum_probs=42.9

Q ss_pred             CCeEEEEcCccch---HHHHHhhhCCCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGG---LLVTLSPMFPSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~---~~~~la~~~p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++|=.|++.|.   ++..+++.  +++|+.+|.+++.++.+.+.+...       ..++..+.+|+.+
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~-------~~~~~~~~~Dv~~   68 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKK-------GFQVTGSVCDASL   68 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-------TCCEEEEECCTTS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-------CCceEEEeccCCC
Confidence            6788888987665   33444444  679999999999988888877653       2468888888764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=83.19  E-value=1  Score=30.65  Aligned_cols=43  Identities=7%  Similarity=0.105  Sum_probs=34.6

Q ss_pred             CCCeEEEEcCc--cchHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         55 KKVEFVDVGCG--YGGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        55 ~~~~vLDiGCG--~G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      ++.+||=.|+|  .|.+++.+|+.. +++|++++.+++-.+.+++.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~l   72 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA   72 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhc
Confidence            46788888555  677999999886 57999999999988887643

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=83.19  E-value=3.1  Score=30.29  Aligned_cols=59  Identities=5%  Similarity=-0.095  Sum_probs=42.4

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++|=.|.+.|. +..+|+.+  .+++|+.+|.+++.++.+.+.+...      + .++.++.+|+.+
T Consensus         8 GK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~------g-~~~~~~~~Dv~~   68 (259)
T d2ae2a_           8 GCTALVTGGSRGI-GYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK------G-FKVEASVCDLSS   68 (259)
T ss_dssp             TCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------T-CEEEEEECCTTC
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------C-CCceEEEeeCCC
Confidence            6788888977654 33333332  2678999999999998888877653      2 467888888764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.00  E-value=2.5  Score=30.81  Aligned_cols=62  Identities=8%  Similarity=0.011  Sum_probs=42.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|=.|++.|. +..+|+.+  .+++|+.+|.+++.++.+.+.+....    ..-.++.++.+|+.+
T Consensus         5 gKvalVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~----~~~~~~~~~~~Dvt~   68 (264)
T d1spxa_           5 EKVAIITGSSNGI-GRATAVLFAREGAKVTITGRHAERLEETRQQILAAG----VSEQNVNSVVADVTT   68 (264)
T ss_dssp             TCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CCGGGEEEEECCTTS
T ss_pred             CCEEEEeCcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CCcCceEEEEccCCC
Confidence            5677777877554 44444432  36799999999999998888876640    112368888888764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.96  E-value=3.2  Score=30.16  Aligned_cols=59  Identities=15%  Similarity=0.226  Sum_probs=42.9

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++|=.|.+.| ++.++|+.+  .+++|+.+|.+++.++.+.+.++..      + .++.++.+|+.+
T Consensus        11 gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~------g-~~~~~~~~Dvs~   71 (255)
T d1fmca_          11 GKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------G-GQAFACRCDITS   71 (255)
T ss_dssp             TCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT------T-CCEEEEECCTTC
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc------C-CcEEEEEccCCC
Confidence            577887776654 444444443  3679999999999998888887764      2 468888888874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.77  E-value=2.2  Score=30.93  Aligned_cols=61  Identities=5%  Similarity=0.001  Sum_probs=42.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|=.|++.| ++.++|+.+  .+++|+.+|.+++.++.+.+.+.+.     ..-.++.++.+|+.+
T Consensus         3 GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~-----~~~~~~~~~~~Dv~~   65 (254)
T d2gdza1           3 GKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ-----FEPQKTLFIQCDVAD   65 (254)
T ss_dssp             TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT-----SCGGGEEEEECCTTS
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-----cCCCcEEEEEeecCC
Confidence            577888887655 455555543  3679999999999888777666432     122468888888774

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.74  E-value=1.1  Score=30.28  Aligned_cols=45  Identities=16%  Similarity=0.103  Sum_probs=34.3

Q ss_pred             CCCCeEEEEcCcc-chHHHHHhhhCCCCeEEEEECCHHHHHHHHHH
Q psy13087         54 EKKVEFVDVGCGY-GGLLVTLSPMFPSTLILGLEIRVKVSDYVIDR   98 (170)
Q Consensus        54 ~~~~~vLDiGCG~-G~~~~~la~~~p~~~v~GvDis~~~i~~a~~~   98 (170)
                      +++.+||=+|||- |.+++.+|+......|+++|.+++-.+.+++-
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            3478888888873 44677777777667899999999988877653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=81.72  E-value=4.2  Score=29.32  Aligned_cols=57  Identities=7%  Similarity=0.088  Sum_probs=39.7

Q ss_pred             eEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         58 EFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        58 ~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      .+|=.|++.| ++..+|+.+  .+++|+.+|++++.++.+.+.++..      + .++.++.+|+.+
T Consensus         3 ValITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~------g-~~~~~~~~Dv~~   61 (255)
T d1gega_           3 VALVTGAGQG-IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA------G-GHAVAVKVDVSD   61 (255)
T ss_dssp             EEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------T-CCEEEEECCTTS
T ss_pred             EEEEcCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------C-CcEEEEEeeCCC
Confidence            3455676654 444444432  3679999999999998888887664      2 478888888874

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.30  E-value=2.7  Score=30.87  Aligned_cols=62  Identities=8%  Similarity=0.007  Sum_probs=43.3

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++|=-|++.|. +..+|+.+  .+++|+.+|++++.++.+.+.+.+..    ..-.++..+.+|+.+
T Consensus         4 gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~----~~~~~~~~~~~Dv~~   67 (274)
T d1xhla_           4 GKSVIITGSSNGI-GRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG----VPAEKINAVVADVTE   67 (274)
T ss_dssp             TCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CCGGGEEEEECCTTS
T ss_pred             CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcceEEEEeeCCC
Confidence            6788888887764 44444332  26789999999999998888876640    112368888888764

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=81.15  E-value=2.4  Score=30.84  Aligned_cols=60  Identities=7%  Similarity=0.015  Sum_probs=40.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++++|=.|.+.| ++..+|+.+  .+++|+.+|.+++.+..+.+.+.+.      .-.++.++.+|+.+
T Consensus         9 gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~------~g~~~~~~~~Dv~~   70 (260)
T d1h5qa_           9 NKTIIVTGGNRG-IGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE------FGVKTKAYQCDVSN   70 (260)
T ss_dssp             TEEEEEETTTSH-HHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH------HTCCEEEEECCTTC
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH------hCCceEEEEccCCC
Confidence            578888896554 444444443  3679999999988777666665432      12468888888764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=80.95  E-value=3.8  Score=29.59  Aligned_cols=59  Identities=15%  Similarity=0.220  Sum_probs=43.1

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchhh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAMK  122 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~~  122 (170)
                      ++.+|=.|.+.| ++..+|+.+  .+++|+.+|.+++.++.+.+.++..      + .++..+.+|+.+
T Consensus        10 nKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~------g-~~~~~~~~Dvt~   70 (251)
T d2c07a1          10 NKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF------G-YESSGYAGDVSK   70 (251)
T ss_dssp             SCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT------T-CCEEEEECCTTC
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc------C-CcEEEEEccCCC
Confidence            567888887665 555555543  3569999999999998888877653      2 468888888764

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.93  E-value=3.6  Score=29.91  Aligned_cols=59  Identities=8%  Similarity=-0.009  Sum_probs=40.6

Q ss_pred             CCeEEEEcCccchHHHHHhhhC--CCCeEEEEECCHHHHHHHHHHHHHHhhcCCCCCCCeEEEEcchh
Q psy13087         56 KVEFVDVGCGYGGLLVTLSPMF--PSTLILGLEIRVKVSDYVIDRVAALRSQNKGQYENIACIRTNAM  121 (170)
Q Consensus        56 ~~~vLDiGCG~G~~~~~la~~~--p~~~v~GvDis~~~i~~a~~~~~~~~~~~~~~~~nv~~i~~d~~  121 (170)
                      ++++|=.|++.|. +.++|+.+  .+++|+.++.+++.++.+.+.+...      ...++.+..+|..
T Consensus        14 GK~alITGassGI-G~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~------~~~~~~~~~~d~~   74 (269)
T d1xu9a_          14 GKKVIVTGASKGI-GREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL------GAASAHYIAGTME   74 (269)
T ss_dssp             TCEEEESSCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH------TCSEEEEEECCTT
T ss_pred             CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhh------hcccchhhhhhhh
Confidence            6789989988874 33334332  2679999999999999887776554      2245666666544