Psyllid ID: psy13136

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-----
TGKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSIIKHRDTQETLAVLDRLDLDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKDNEALQVDEAFVGLENLDANVPCICKRTDPSSVFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKEMMGPKMDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKEMMGPKMDNYTYVKHTP
cccccccccccHHHHHHHHHHHcccccccccccccccHHccccHHHHHHHHcccccccccccHHHHHHHHcHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHEEccccHHcccHHHHHHHHHHHHHccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHEEccccEEEccHHHHHHHHHHHHHccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
HccEcccccccHHHHHHHHHHHcccHccccccHHHHEEccccHHHHHHHHHHHHcHHcccccHHHHHHHHcccHHHccccccHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccHcHHHHHHHHHHHHHEEEccccEEEEccHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEccccccccccHHHHHHHHccccccHHHHHHHHcHHcccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccccccccccccccccccEHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccHcHHHHHHHHHHHHHEEEccccEEEEccHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccc
tgklhyptdvcgplfeeelefwgldapkykiesNFRSIIKHRDTQETLAVLDRldldtekpsdeemARKFGFEEAYFKGRLswwqktkpqlwslfdepyssnsakdnealqVDEAFVglenldanvpcickrtdpssvfpcvSLVYYAERiqanphndfnsipLGLWWALVTMTTvgygdmapktYVGMFVGALCALAGVltialpvpvivSNFAMYYSHTQaraklpkkrrrvlpveqprgpmrlpgqgppsgpggtpvgpcggpvgggggggipssvssgnmnrrmnpakannpkemmgpkmdtekpsdeeMARKFGFEEAYFKGRLswwqktkpqlwslfdepyssnsakiIGVVSVFFICISILSFclkthpdmrvpvihnitvrtthntsawtldktqtnahDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIqanphndfnsipLGLWWALVTMTTvgygdmapktYVGMFVGALCALAGVltialpvpvivSNFAMYYSHTQaraklpkkrrrvlpveqprgpmrlpgqgppsgpggtpvgpcggpvgggggggipssvssgnmnrrmnpakannpkemmgpkmdnytyvkhtp
tgklhyptdvcgpLFEEELEFWGLDAPKYKIESNFRSiikhrdtqetlavldrldldtekpsdeemarkFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKDNEALQVDEAFVGLENLDANVPCICKRTDPSSVFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTqaraklpkkrrrvlpveqprgpmrlpgqGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNpakannpkemmgpkmDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITvrtthntsawTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTqaraklpkkrrrvlpveqprgpmrlpgqGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPakannpkemmgpkmdnytyvkhtp
TGKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSIIKHRDTQETLAVLDRLDLDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKDNEALQVDEAFVGLENLDANVPCICKRTDPSSVFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRGPMRLpgqgppsgpggtpvgpcggpvgggggggipssvssgNMNRRMNPAKANNPKEMMGPKMDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKEltllvfflvlgivifASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRGPMRLpgqgppsgpggtpvgpcggpvgggggggipssvssgNMNRRMNPAKANNPKEMMGPKMDNYTYVKHTP
****HYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSIIKHRDTQETLAVLDRL**************KFGFEEAYFKGRLSWWQKTKPQLWSLFDE***********ALQVDEAFVGLENLDANVPCICKRTDPSSVFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHT************************************************************************************************FGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHT*********************************************************************************************
TGKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSI****************************************GRLSWWQKTKPQLWSLFDEPYSSNSAKDNEALQVDEAFVGLENLDANVPCICKRTDPSSVFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHT*****************************************CGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKEMMGPKMDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYY************************************************************************************************
TGKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSIIKHRDTQETLAVLDRLDLDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKDNEALQVDEAFVGLENLDANVPCICKRTDPSSVFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQ*********RRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKE**************EMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQ*********RRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKEMMGPKMDNYTYVKHTP
*GKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSIIKHRDTQETLAVLDRLDLDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKDNEALQVDEAFVGLENLDANVPCICKRTDPSSVFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLP*****************************************GGGGGIPSSVSSGNMNRRMNPAKANNPKEMMGPKMDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRV**********************QTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLP**********************************************************************MMGPKMDNYTYV****
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TGKLHYPTDVCGPLFEEELEFWGLDAPKYKIESNFRSIIKHRDTQETLAVLDRLDLDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKDNEALQVDEAFVGLENLDANVPCICKRTDPSSVFPCVSLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKEMMGPKMDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRGPMRLPGQGPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKEMMGPKMDNYTYVKHTP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query695 2.2.26 [Sep-21-2011]
P17972498 Potassium voltage-gated c no N/A 0.528 0.736 0.804 1e-170
G5EFC3558 Potassium voltage-gated c yes N/A 0.516 0.643 0.531 1e-102
P22462638 Potassium voltage-gated c yes N/A 0.447 0.487 0.466 6e-78
Q96PR1638 Potassium voltage-gated c yes N/A 0.447 0.487 0.463 7e-78
Q14B80642 Potassium voltage-gated c yes N/A 0.447 0.484 0.466 8e-78
P25122585 Potassium voltage-gated c no N/A 0.431 0.512 0.457 2e-71
P48547511 Potassium voltage-gated c no N/A 0.431 0.587 0.460 2e-71
P15388511 Potassium voltage-gated c no N/A 0.431 0.587 0.457 3e-71
Q01956 889 Potassium voltage-gated c no N/A 0.387 0.302 0.484 7e-71
Q63959 769 Potassium voltage-gated c no N/A 0.387 0.349 0.484 2e-70
>sp|P17972|KCNAW_DROME Potassium voltage-gated channel protein Shaw OS=Drosophila melanogaster GN=Shaw PE=2 SV=1 Back     alignment and function desciption
 Score =  600 bits (1547), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 309/384 (80%), Positives = 336/384 (87%), Gaps = 17/384 (4%)

Query: 304 MDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFI 363
           +DTEKPS+EE+ARKFGFEE Y+KG +SWWQ+ KP++WSLFDEPYSSN+AK IGVVSVFFI
Sbjct: 125 LDTEKPSEEELARKFGFEEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFI 184

Query: 364 CISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTF 423
           CISILSFCLKTHPDMRVP++ NITV+T + ++ W LDKTQTNAH AFFYIEC+CNAWFTF
Sbjct: 185 CISILSFCLKTHPDMRVPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTF 244

Query: 424 EILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMR 483
           EIL+RFISSP K EFIK+SVN+IDYIATLSFYIDL+LQ+FASHLENADILEFFSIIRIMR
Sbjct: 245 EILVRFISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEFFSIIRIMR 304

Query: 484 LFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSI 543
           LFKLTRHSSGLKIL+QTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQ NPHNDFNSI
Sbjct: 305 LFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPHNDFNSI 364

Query: 544 PLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQ 603
           PLGLWWALVTMTTVGYGDMAPKTY+GMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQ
Sbjct: 365 PLGLWWALVTMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQ 424

Query: 604 ARAKLPKKRRRVLPVEQPRGPMRLPGQ-GPPSGPGGTPVGPCGGPVGGGGGGGIPSSVSS 662
           ARAKLPKKRRRVLPVEQPR P RLPG  G  SG G    GP  GP+G GG G        
Sbjct: 425 ARAKLPKKRRRVLPVEQPRQP-RLPGAPGGVSGCGTPGSGPHSGPMGSGGTGP------- 476

Query: 663 GNMNRRMNPAKANNPKEMMGPKMD 686
               RRMN    N  K+++ PK D
Sbjct: 477 ----RRMN----NKTKDLVSPKSD 492
Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.
Drosophila melanogaster (taxid: 7227)
>sp|G5EFC3|KCNAG_CAEEL Potassium voltage-gated channel protein egl-36 OS=Caenorhabditis elegans GN=egl-36 PE=1 SV=1 Back     alignment and function description
>sp|P22462|KCNC2_RAT Potassium voltage-gated channel subfamily C member 2 OS=Rattus norvegicus GN=Kcnc2 PE=1 SV=1 Back     alignment and function description
>sp|Q96PR1|KCNC2_HUMAN Potassium voltage-gated channel subfamily C member 2 OS=Homo sapiens GN=KCNC2 PE=1 SV=1 Back     alignment and function description
>sp|Q14B80|KCNC2_MOUSE Potassium voltage-gated channel subfamily C member 2 OS=Mus musculus GN=Kcnc2 PE=1 SV=1 Back     alignment and function description
>sp|P25122|KCNC1_RAT Potassium voltage-gated channel subfamily C member 1 OS=Rattus norvegicus GN=Kcnc1 PE=2 SV=1 Back     alignment and function description
>sp|P48547|KCNC1_HUMAN Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=2 SV=1 Back     alignment and function description
>sp|P15388|KCNC1_MOUSE Potassium voltage-gated channel subfamily C member 1 OS=Mus musculus GN=Kcnc1 PE=2 SV=1 Back     alignment and function description
>sp|Q01956|KCNC3_RAT Potassium voltage-gated channel subfamily C member 3 OS=Rattus norvegicus GN=Kcnc3 PE=2 SV=1 Back     alignment and function description
>sp|Q63959|KCNC3_MOUSE Potassium voltage-gated channel subfamily C member 3 OS=Mus musculus GN=Kcnc3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query695
328723490471 PREDICTED: potassium voltage-gated chann 0.536 0.791 0.788 1e-177
194759548593 GF15250 [Drosophila ananassae] gi|190615 0.525 0.615 0.811 1e-170
195387662618 GJ21169 [Drosophila virilis] gi|19414897 0.523 0.588 0.803 1e-170
442625753510 shaker cognate w, isoform D [Drosophila 0.532 0.725 0.803 1e-170
195052167611 GH13703 [Drosophila grimshawi] gi|193900 0.525 0.597 0.801 1e-169
195117220608 GI23908 [Drosophila mojavensis] gi|19391 0.525 0.600 0.798 1e-169
195147996505 GL18670 [Drosophila persimilis] gi|19410 0.528 0.726 0.802 1e-169
198474422614 GA15475 [Drosophila pseudoobscura pseudo 0.525 0.594 0.803 1e-169
221330674619 shaker cognate w, isoform C [Drosophila 0.525 0.589 0.806 1e-169
28574020604 shaker cognate w, isoform B [Drosophila 0.525 0.604 0.806 1e-169
>gi|328723490|ref|XP_001951251.2| PREDICTED: potassium voltage-gated channel protein Shaw-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 320/406 (78%), Positives = 349/406 (85%), Gaps = 33/406 (8%)

Query: 304 MDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFI 363
           +DTEKPSDEEMARKFGFEEA+F+GRL+WWQ+ KPQLWS+FDEPYSSN+AKIIG+VSVFFI
Sbjct: 37  LDTEKPSDEEMARKFGFEEAFFQGRLTWWQRFKPQLWSMFDEPYSSNAAKIIGIVSVFFI 96

Query: 364 CISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTF 423
           C+SILSFCLKTHP+MRVP+I NITV T+HNT+AW LDKTQTNAH+AFFYIEC+CNAWFTF
Sbjct: 97  CVSILSFCLKTHPNMRVPIIKNITVNTSHNTTAWVLDKTQTNAHEAFFYIECVCNAWFTF 156

Query: 424 EILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMR 483
           EIL+RFI+SP KCEF+KASVN+IDYIATLSFYIDL+LQKFASHLENADILEFFSIIRIMR
Sbjct: 157 EILVRFIASPNKCEFVKASVNIIDYIATLSFYIDLILQKFASHLENADILEFFSIIRIMR 216

Query: 484 LFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSI 543
           LFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSI
Sbjct: 217 LFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSI 276

Query: 544 PLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQ 603
           PLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQ
Sbjct: 277 PLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQ 336

Query: 604 ARAKLPKKRRRVLPVEQPRGP------------------------MRLPGQGPPSGPGGT 639
           ARAKLPKKRRRVLPVEQPRGP                        +   G GP +G GG 
Sbjct: 337 ARAKLPKKRRRVLPVEQPRGPRLPGQGPPPQQQMNQPGCGMGGIGVGGGGHGPCAGVGGL 396

Query: 640 PVGPCGGPVGGGGGGGIPSSVSSGNMNRRMNPAKANNPKEMMGPKM 685
           P    G PV      G+P+      +NRRMN  K+N+PK+  GPK+
Sbjct: 397 PPNVAGAPV---NTTGVPA------VNRRMNAIKSNHPKDGAGPKV 433

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|194759548|ref|XP_001962009.1| GF15250 [Drosophila ananassae] gi|190615706|gb|EDV31230.1| GF15250 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195387662|ref|XP_002052513.1| GJ21169 [Drosophila virilis] gi|194148970|gb|EDW64668.1| GJ21169 [Drosophila virilis] Back     alignment and taxonomy information
>gi|442625753|ref|NP_001260000.1| shaker cognate w, isoform D [Drosophila melanogaster] gi|440213280|gb|AGB92536.1| shaker cognate w, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195052167|ref|XP_001993247.1| GH13703 [Drosophila grimshawi] gi|193900306|gb|EDV99172.1| GH13703 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195117220|ref|XP_002003147.1| GI23908 [Drosophila mojavensis] gi|193913722|gb|EDW12589.1| GI23908 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195147996|ref|XP_002014960.1| GL18670 [Drosophila persimilis] gi|194106913|gb|EDW28956.1| GL18670 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|198474422|ref|XP_001356678.2| GA15475 [Drosophila pseudoobscura pseudoobscura] gi|198138386|gb|EAL33743.2| GA15475 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|221330674|ref|NP_001137782.1| shaker cognate w, isoform C [Drosophila melanogaster] gi|220901931|gb|ACL82989.1| shaker cognate w, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|28574020|ref|NP_722937.2| shaker cognate w, isoform B [Drosophila melanogaster] gi|17946111|gb|AAL49097.1| RE54962p [Drosophila melanogaster] gi|28380273|gb|AAF51068.3| shaker cognate w, isoform B [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query695
FB|FBgn0003386498 Shaw "Shaker cognate w" [Droso 0.461 0.644 0.838 6.4e-147
FB|FBgn0085395 941 Shawl "Shaw-like" [Drosophila 0.313 0.231 0.662 4.3e-111
WB|WBGene00004793479 shw-3 [Caenorhabditis elegans 0.448 0.651 0.555 7e-93
WB|WBGene00001202558 egl-36 [Caenorhabditis elegans 0.456 0.568 0.550 4.5e-91
WB|WBGene00008819619 shw-1 [Caenorhabditis elegans 0.444 0.499 0.535 4e-90
MGI|MGI:96669 769 Kcnc3 "potassium voltage gated 0.421 0.381 0.454 3.7e-88
UNIPROTKB|F1RH35 773 KCNC3 "Uncharacterized protein 0.421 0.379 0.454 4.7e-88
UNIPROTKB|E7ETH1728 KCNC3 "Potassium voltage-gated 0.421 0.402 0.454 4.7e-88
UNIPROTKB|Q14003 757 KCNC3 "Potassium voltage-gated 0.421 0.387 0.454 4.7e-88
RGD|621358 889 Kcnc3 "potassium voltage gated 0.421 0.329 0.454 6e-88
FB|FBgn0003386 Shaw "Shaker cognate w" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1435 (510.2 bits), Expect = 6.4e-147, P = 6.4e-147
 Identities = 269/321 (83%), Positives = 292/321 (90%)

Query:   304 MDTEKPSDEEMARKFGFEEAYFKGRLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFI 363
             +DTEKPS+EE+ARKFGFEE Y+KG +SWWQ+ KP++WSLFDEPYSSN+AK IGVVSVFFI
Sbjct:   125 LDTEKPSEEELARKFGFEEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFI 184

Query:   364 CISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTF 423
             CISILSFCLKTHPDMRVP++ NITV+T + ++ W LDKTQTNAH AFFYIEC+CNAWFTF
Sbjct:   185 CISILSFCLKTHPDMRVPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTF 244

Query:   424 EILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMR 483
             EIL+RFISSP K EFIK+SVN+IDYIATLSFYIDL+LQ+FASHLENADILEFFSIIRIMR
Sbjct:   245 EILVRFISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEFFSIIRIMR 304

Query:   484 LFKLTRHSSGLKILMQTFRASAKEXXXXXXXXXXXXXXXASLVYYAERIQANPHNDFNSI 543
             LFKLTRHSSGLKIL+QTFRASAKE               ASLVYYAERIQ NPHNDFNSI
Sbjct:   305 LFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPHNDFNSI 364

Query:   544 PLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQ 603
             PLGLWWALVTMTTVGYGDMAPKTY+GMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQ
Sbjct:   365 PLGLWWALVTMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQ 424

Query:   604 ARAKLPKKRRRVLPVEQPRGP 624
             ARAKLPKKRRRVLPVEQPR P
Sbjct:   425 ARAKLPKKRRRVLPVEQPRQP 445
GO:0005886 "plasma membrane" evidence=ISS
GO:0016021 "integral to membrane" evidence=NAS
GO:0005249 "voltage-gated potassium channel activity" evidence=NAS;TAS
GO:0006813 "potassium ion transport" evidence=IEA;NAS;TAS
GO:0008076 "voltage-gated potassium channel complex" evidence=IEA;TAS
GO:0051260 "protein homooligomerization" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0030431 "sleep" evidence=IMP
GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA
FB|FBgn0085395 Shawl "Shaw-like" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00004793 shw-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00001202 egl-36 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00008819 shw-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:96669 Kcnc3 "potassium voltage gated channel, Shaw-related subfamily, member 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RH35 KCNC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E7ETH1 KCNC3 "Potassium voltage-gated channel subfamily C member 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q14003 KCNC3 "Potassium voltage-gated channel subfamily C member 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|621358 Kcnc3 "potassium voltage gated channel, Shaw-related subfamily, member 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
G5EFC3KCNAG_CAEELNo assigned EC number0.53190.51650.6433yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query695
pfam00520194 pfam00520, Ion_trans, Ion transport protein 4e-35
pfam0788574 pfam07885, Ion_trans_2, Ion channel 3e-09
pfam00520194 pfam00520, Ion_trans, Ion transport protein 2e-08
pfam0788574 pfam07885, Ion_trans_2, Ion channel 2e-07
pfam0221492 pfam02214, K_tetra, K+ channel tetramerisation dom 2e-05
PRK10537393 PRK10537, PRK10537, voltage-gated potassium channe 0.001
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein Back     alignment and domain information 
 Score =  131 bits (331), Expect = 4e-35
 Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 20/197 (10%)

Query: 412 YIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENAD 471
            ++ +    FT E+L++FI+   K ++ ++  N++D++  L   + L+L       E++ 
Sbjct: 1   ILDYVFTVIFTLEMLLKFIALGFKRKYFRSPWNILDFLVVLPSLVSLILFLLG---EDSG 57

Query: 472 ILEFFSIIRIMRLFKLTRHSSGLKILMQTF---RASAKELTLLVFFLVLGIVIFASLVYY 528
           +L    ++R++RL +L R   GL+ L+Q+      S   L LL+  L+    I    ++ 
Sbjct: 58  LLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAIIGVQLFG 117

Query: 529 AE--------RIQANPHNDFNSIPLGLWWALVTMTTVGYGD-----MAPKTYVGM-FVGA 574
            E            N +++F+S    L W   T+TT G+GD     + P T +G  F   
Sbjct: 118 GELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWGDVMYDTLVPGTVLGKIFFVI 177

Query: 575 LCALAGVLTIALPVPVI 591
              L GVL + L + VI
Sbjct: 178 FIILGGVLLLNLLIGVI 194

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel Back     alignment and domain information
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein Back     alignment and domain information
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel Back     alignment and domain information
>gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain Back     alignment and domain information
>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 695
KOG3713|consensus477 100.0
KOG4390|consensus 632 100.0
KOG1545|consensus507 100.0
KOG1545|consensus507 100.0
KOG2302|consensus 1956 99.96
KOG1419|consensus 654 99.96
KOG2302|consensus 1956 99.94
KOG2301|consensus1592 99.92
KOG3713|consensus477 99.92
KOG2301|consensus 1592 99.91
PLN03192 823 Voltage-dependent potassium channel; Provisional 99.89
KOG0498|consensus 727 99.82
KOG4390|consensus632 99.81
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.81
KOG0501|consensus 971 99.72
KOG1420|consensus 1103 99.71
KOG0500|consensus 536 99.56
KOG1419|consensus654 99.53
KOG4404|consensus350 99.5
PLN03223 1634 Polycystin cation channel protein; Provisional 99.37
KOG0499|consensus 815 99.33
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.29
KOG1418|consensus433 99.25
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.23
PRK10537393 voltage-gated potassium channel; Provisional 99.12
PRK10537393 voltage-gated potassium channel; Provisional 98.97
KOG3599|consensus798 98.94
KOG3684|consensus489 98.93
PF08016425 PKD_channel: Polycystin cation channel; InterPro: 98.91
PLN03192823 Voltage-dependent potassium channel; Provisional 98.7
TIGR00870743 trp transient-receptor-potential calcium channel p 98.67
KOG1420|consensus 1103 98.56
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 98.34
KOG1418|consensus 433 98.16
KOG3684|consensus489 98.04
KOG3193|consensus 1087 97.98
KOG3609|consensus 822 97.94
KOG3614|consensus 1381 97.85
KOG0498|consensus727 97.8
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 97.75
KOG4404|consensus 350 97.65
KOG0510|consensus929 97.58
KOG3676|consensus782 97.33
KOG3827|consensus 400 97.19
PF00520200 Ion_trans: Ion transport protein calcium channel s 96.58
KOG0501|consensus971 96.54
KOG3533|consensus2706 95.97
KOG3193|consensus 1087 95.61
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 95.39
KOG3827|consensus400 94.83
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 93.48
KOG4440|consensus993 92.98
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 92.66
KOG0500|consensus536 91.43
COG0168499 TrkG Trk-type K+ transport systems, membrane compo 90.84
KOG1052|consensus656 90.29
PLN03223 1634 Polycystin cation channel protein; Provisional 89.65
KOG1054|consensus897 89.17
KOG0499|consensus815 84.01
KOG1053|consensus 1258 83.12
KOG3733|consensus566 82.19
>KOG3713|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.7e-64  Score=524.92  Aligned_cols=220  Identities=52%  Similarity=0.969  Sum_probs=202.4

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHhhhh----ccchh-hHHHH
Q psy13136        401 KTQTNAHDAFFYIECLCNAWFTFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFAS----HLENA-DILEF  475 (695)
Q Consensus       401 ~~~~~~~~~l~~~~~~~~~iF~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~----~~~~~-~~l~~  475 (695)
                      +.....++.+.++|++|.++|++|+++|+..++++++|+|++.|++|+++++|+|+++.+...+.    ...+. ..+|+
T Consensus       233 ~~~~~~~p~l~~vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrv  312 (477)
T KOG3713|consen  233 KIESEPHPILTYVETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRV  312 (477)
T ss_pred             ccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHH
Confidence            34456788999999999999999999999999999999999999999999999999998876653    22333 78999


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhh
Q psy13136        476 FSIIRIMRLFKLTRHSSGLKILMQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMT  555 (695)
Q Consensus       476 lRllRllR~lkl~r~~~~l~~l~~~l~~s~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tlt  555 (695)
                      ||++|++|++||.|+..+||.+..+++++.+++..+++++.+.+.+||.+.|++|+  +.++.+|.+++.++||+++|||
T Consensus       313 lR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek--~~~~~~FtSIPa~~WWaiVTMT  390 (477)
T KOG3713|consen  313 LRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEK--DEPDTKFTSIPAGFWWAVVTMT  390 (477)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCccccchhheeeEEEe
Confidence            99999999999999999999999999999999999999999999999999999999  4555669999999999999999


Q ss_pred             cccccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHhhhcccCCCCCC
Q psy13136        556 TVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPR  622 (695)
Q Consensus       556 TvGyGDi~p~t~~g~~~~~~~~l~g~~~~~l~ia~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (695)
                      ||||||++|.|..|++++...+++|++++++.|.+|++||++++.+.+++++..+++++....++..
T Consensus       391 TVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~~~~~~~~~~~~~  457 (477)
T KOG3713|consen  391 TVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAPKRREALEPAESIA  457 (477)
T ss_pred             eecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhhhhhcccccccccc
Confidence            9999999999999999999999999999999999999999999999999999888888877664433

>KOG4390|consensus Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>KOG2302|consensus Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>KOG2302|consensus Back     alignment and domain information
>KOG2301|consensus Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>KOG2301|consensus Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>KOG1419|consensus Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG3599|consensus Back     alignment and domain information
>KOG3684|consensus Back     alignment and domain information
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>KOG1420|consensus Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG1418|consensus Back     alignment and domain information
>KOG3684|consensus Back     alignment and domain information
>KOG3193|consensus Back     alignment and domain information
>KOG3609|consensus Back     alignment and domain information
>KOG3614|consensus Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG4404|consensus Back     alignment and domain information
>KOG0510|consensus Back     alignment and domain information
>KOG3676|consensus Back     alignment and domain information
>KOG3827|consensus Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>KOG3533|consensus Back     alignment and domain information
>KOG3193|consensus Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG3827|consensus Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>KOG4440|consensus Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1052|consensus Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>KOG1054|consensus Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information
>KOG1053|consensus Back     alignment and domain information
>KOG3733|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query695
2r9r_B514 Shaker Family Voltage Dependent Potassium Channel ( 6e-58
3lnm_B514 F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Chan 4e-57
3lut_B499 A Structural Model For The Full-Length Shaker Potas 1e-55
2a79_B499 Mammalian Shaker Kv1.2 Potassium Channel- Beta Subu 2e-55
3kvt_A115 Tetramerization Domain From Akv3.1 (shaw-subfamily) 2e-13
1orq_C223 X-Ray Structure Of A Voltage-Dependent Potassium Ch 3e-07
1orq_C223 X-Ray Structure Of A Voltage-Dependent Potassium Ch 3e-07
3beh_A355 Structure Of A Bacterial Cyclic Nucleotide Regulate 4e-06
3beh_A355 Structure Of A Bacterial Cyclic Nucleotide Regulate 4e-06
2a0l_A241 Crystal Structure Of Kvap-33h1 Fv Complex Length = 4e-06
2a0l_A241 Crystal Structure Of Kvap-33h1 Fv Complex Length = 4e-06
4h33_A137 Crystal Structure Of A Voltage-gated K+ Channel Por 4e-06
4h33_A137 Crystal Structure Of A Voltage-gated K+ Channel Por 4e-06
3or7_C103 On The Structural Basis Of Modal Gating Behavior In 7e-06
3or7_C103 On The Structural Basis Of Modal Gating Behavior In 7e-06
3stz_C102 Kcsa Potassium Channel Mutant Y82c With Nitroxide S 8e-06
3stz_C102 Kcsa Potassium Channel Mutant Y82c With Nitroxide S 8e-06
3stl_C103 Kcsa Potassium Channel Mutant Y82c With Cadmium Bou 9e-06
3stl_C103 Kcsa Potassium Channel Mutant Y82c With Cadmium Bou 9e-06
3ogc_C131 Kcsa E71a Variant In Presence Of Na+ Length = 131 9e-06
3ogc_C131 Kcsa E71a Variant In Presence Of Na+ Length = 131 9e-06
2atk_C124 Structure Of A Mutant Kcsa K+ Channel Length = 124 2e-05
2atk_C124 Structure Of A Mutant Kcsa K+ Channel Length = 124 2e-05
1zwi_C103 Structure Of Mutant Kcsa Potassium Channel Length = 2e-05
1zwi_C103 Structure Of Mutant Kcsa Potassium Channel Length = 2e-05
3eff_K139 The Crystal Structure Of Full-Length Kcsa In Its Cl 2e-05
3eff_K139 The Crystal Structure Of Full-Length Kcsa In Its Cl 2e-05
3pjs_K166 Mechanism Of Activation Gating In The Full-Length K 2e-05
3pjs_K166 Mechanism Of Activation Gating In The Full-Length K 2e-05
3ifx_A129 Crystal Structure Of The Spin-Labeled Kcsa Mutant V 2e-05
3ifx_A129 Crystal Structure Of The Spin-Labeled Kcsa Mutant V 2e-05
2p7t_C103 Crystal Structure Of Kcsa Mutant Length = 103 2e-05
2p7t_C103 Crystal Structure Of Kcsa Mutant Length = 103 2e-05
1k4d_C124 Potassium Channel Kcsa-Fab Complex In Low Concentra 3e-05
1k4d_C124 Potassium Channel Kcsa-Fab Complex In Low Concentra 3e-05
3or6_C103 On The Structural Basis Of Modal Gating Behavior In 3e-05
3or6_C103 On The Structural Basis Of Modal Gating Behavior In 3e-05
1jvm_A125 Kcsa Potassium Channel With Tba (Tetrabutylammonium 3e-05
1jvm_A125 Kcsa Potassium Channel With Tba (Tetrabutylammonium 3e-05
2hjf_C103 Potassium Channel Kcsa-Fab Complex With Tetrabutyla 3e-05
2hjf_C103 Potassium Channel Kcsa-Fab Complex With Tetrabutyla 3e-05
1f6g_A160 Potassium Channel (Kcsa) Full-Length Fold Length = 3e-05
1f6g_A160 Potassium Channel (Kcsa) Full-Length Fold Length = 3e-05
2jk5_C124 Potassium Channel Kcsa In Complex With Tetrabutylam 3e-05
2jk5_C124 Potassium Channel Kcsa In Complex With Tetrabutylam 3e-05
1bl8_A97 Potassium Channel (Kcsa) From Streptomyces Lividans 3e-05
1bl8_A97 Potassium Channel (Kcsa) From Streptomyces Lividans 3e-05
3f5w_C104 Kcsa Potassium Channel In The Open-Inactivated Stat 3e-05
3f5w_C104 Kcsa Potassium Channel In The Open-Inactivated Stat 3e-05
1j95_A125 Kcsa Potassium Channel With Tba (Tetrabutylammonium 4e-05
1j95_A125 Kcsa Potassium Channel With Tba (Tetrabutylammonium 4e-05
2a9h_A155 Nmr Structural Studies Of A Potassium Channel Chary 4e-05
2a9h_A155 Nmr Structural Studies Of A Potassium Channel Chary 4e-05
3hpl_C124 Kcsa E71h-F103a Mutant In The Closed State Length = 4e-05
3hpl_C124 Kcsa E71h-F103a Mutant In The Closed State Length = 4e-05
1s5h_C124 Potassium Channel Kcsa-Fab Complex T75c Mutant In K 6e-05
1s5h_C124 Potassium Channel Kcsa-Fab Complex T75c Mutant In K 6e-05
2ih1_C122 Ion Selectivity In A Semi-Synthetic K+ Channel Lock 9e-05
2ih1_C122 Ion Selectivity In A Semi-Synthetic K+ Channel Lock 9e-05
3ldd_A82 High Resolution Open Mthk Pore Structure Crystalliz 3e-04
3ldd_A82 High Resolution Open Mthk Pore Structure Crystalliz 3e-04
2k1e_A103 Nmr Studies Of A Channel Protein Without Membranes: 6e-04
2k1e_A103 Nmr Studies Of A Channel Protein Without Membranes: 6e-04
3r65_A82 Mthk Channel Pore E92q Mutant Length = 82 6e-04
3r65_A82 Mthk Channel Pore E92q Mutant Length = 82 6e-04
3ldc_A82 High Resolution Open Mthk Pore Structure Crystalliz 6e-04
3ldc_A82 High Resolution Open Mthk Pore Structure Crystalliz 6e-04
4hyo_A91 Crystal Structure Of Mthk Pore Length = 91 7e-04
4hyo_A91 Crystal Structure Of Mthk Pore Length = 91 7e-04
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel (Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With Beta Subunit Length = 514 Back     alignment and structure 
Iteration: 1

 Score =  222 bits (565), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 131/297 (44%), Positives = 175/297 (58%), Gaps = 12/297 (4%)
Query: 312 EEMARKFGFEEAYFKG--RLSWWQKTKPQLWSLFDEPYSSNSAKIIGVVSVFFICISILS 369
           EE    F  +E Y K   R     + + Q+W LF+ P SS  A+II +VSV  I ISI+S
Sbjct: 139 EEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVS 198
Query: 370 FCLKTHPDMRVP--VIHNITVRTTHNTSAWTLDKTQ-TNAHDAFFYIECLCNAWFTFEIL 426
           FCL+T P  R     +H   V T H  S  T+   Q T+  D FF +E LC  WF+FE L
Sbjct: 199 FCLETLPIFRDENEDMHGGGV-TFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFSFEFL 257
Query: 427 MRFISSPRKCEFIKASVNVIDYIATLSFYIDLLL---QKFASHLENAD-ILEFFSIIRIM 482
           +RF + P K  F    +N+ID +A + +Y+ + L    K     +N   +++ F I+RI+
Sbjct: 258 VRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRIL 317
Query: 483 RLFKLTRHSSGLKILMQTFRASAKEXXXXXXXXXXXXXXXASLVYYAERIQANPHNDFNS 542
           R+FKL+RHS GL+IL QT +AS +E               +S VY+AE  + +  + F S
Sbjct: 318 RIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERD--SQFPS 375
Query: 543 IPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTIALPVPVIVSNFAMYY 599
           IP   WWA+V+MTTVGYGDM P T  G  VG+LCA+AGVLTIALPVPVIVSNF  +Y
Sbjct: 376 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 432
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel Length = 514 Back     alignment and structure
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium Channel Kv1.2 Length = 499 Back     alignment and structure
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit Complex Length = 499 Back     alignment and structure
>pdb|3KVT|A Chain A, Tetramerization Domain From Akv3.1 (shaw-subfamily) Voltage-gated Potassium Channel Length = 115 Back     alignment and structure
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel In Complex With An Fab Length = 223 Back     alignment and structure
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel In Complex With An Fab Length = 223 Back     alignment and structure
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355 Back     alignment and structure
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355 Back     alignment and structure
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex Length = 241 Back     alignment and structure
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex Length = 241 Back     alignment and structure
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore Module In A Closed State In Lipid Membranes, Tetragonal Crystal Form Length = 137 Back     alignment and structure
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore Module In A Closed State In Lipid Membranes, Tetragonal Crystal Form Length = 137 Back     alignment and structure
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In K+channels - E71i Length = 103 Back     alignment and structure
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In K+channels - E71i Length = 103 Back     alignment and structure
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin Label Length = 102 Back     alignment and structure
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin Label Length = 102 Back     alignment and structure
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound Length = 103 Back     alignment and structure
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound Length = 103 Back     alignment and structure
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+ Length = 131 Back     alignment and structure
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+ Length = 131 Back     alignment and structure
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel Length = 124 Back     alignment and structure
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel Length = 124 Back     alignment and structure
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel Length = 103 Back     alignment and structure
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel Length = 103 Back     alignment and structure
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed Conformation Length = 139 Back     alignment and structure
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed Conformation Length = 139 Back     alignment and structure
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+ Channel Length = 166 Back     alignment and structure
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+ Channel Length = 166 Back     alignment and structure
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1 Length = 129 Back     alignment and structure
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1 Length = 129 Back     alignment and structure
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant Length = 103 Back     alignment and structure
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant Length = 103 Back     alignment and structure
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of K+ Length = 124 Back     alignment and structure
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of K+ Length = 124 Back     alignment and structure
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In K+channels - E71q Length = 103 Back     alignment and structure
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In K+channels - E71q Length = 103 Back     alignment and structure
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And Rubidium Length = 125 Back     alignment and structure
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And Rubidium Length = 125 Back     alignment and structure
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium (Tba) Length = 103 Back     alignment and structure
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium (Tba) Length = 103 Back     alignment and structure
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold Length = 160 Back     alignment and structure
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold Length = 160 Back     alignment and structure
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium In High K Length = 124 Back     alignment and structure
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium In High K Length = 124 Back     alignment and structure
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans Length = 97 Back     alignment and structure
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans Length = 97 Back     alignment and structure
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With 32 A Opening At T112 Length = 104 Back     alignment and structure
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With 32 A Opening At T112 Length = 104 Back     alignment and structure
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And Potassium Length = 125 Back     alignment and structure
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And Potassium Length = 125 Back     alignment and structure
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel Charybdotoxin Complex Length = 155 Back     alignment and structure
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel Charybdotoxin Complex Length = 155 Back     alignment and structure
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State Length = 124 Back     alignment and structure
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State Length = 124 Back     alignment and structure
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+ Length = 124 Back     alignment and structure
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+ Length = 124 Back     alignment and structure
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In The Conductive Conformation Length = 122 Back     alignment and structure
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In The Conductive Conformation Length = 122 Back     alignment and structure
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In 100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+ Length = 82 Back     alignment and structure
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In 100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+ Length = 82 Back     alignment and structure
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes: Structure And Dynamics Of Water-Solubilized Kcsa Length = 103 Back     alignment and structure
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes: Structure And Dynamics Of Water-Solubilized Kcsa Length = 103 Back     alignment and structure
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant Length = 82 Back     alignment and structure
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant Length = 82 Back     alignment and structure
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In 100 Mm K+ Length = 82 Back     alignment and structure
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In 100 Mm K+ Length = 82 Back     alignment and structure
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore Length = 91 Back     alignment and structure
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore Length = 91 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query695
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 100.0
3rvy_A285 ION transport protein; tetrameric ION channel, vol 100.0
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.98
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.96
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 99.96
3um7_A309 Potassium channel subfamily K member 4; potassium 99.87
3ukm_A280 Potassium channel subfamily K member 1; membrane p 99.85
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.84
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.79
1ors_C132 Potassium channel; voltage-dependent, voltage sens 99.78
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.64
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.62
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.61
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 99.61
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.61
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.6
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.6
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.58
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.54
2q67_A114 Potassium channel protein; inverted teepee, helix 99.5
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.48
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.47
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.47
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.42
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.39
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.38
2q67_A114 Potassium channel protein; inverted teepee, helix 99.34
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.32
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.31
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.3
1xl4_A301 Inward rectifier potassium channel; integral membr 99.3
1p7b_A333 Integral membrane channel and cytosolic domains; t 99.29
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.28
1xl4_A301 Inward rectifier potassium channel; integral membr 99.28
1p7b_A333 Integral membrane channel and cytosolic domains; t 99.27
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.27
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 99.27
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 99.27
3um7_A309 Potassium channel subfamily K member 4; potassium 99.14
3kvt_A115 Potassium channel protein SHAW; tetramerization do 99.13
3sya_A340 G protein-activated inward rectifier potassium CH; 99.05
3sya_A340 G protein-activated inward rectifier potassium CH; 99.05
1lnq_A336 MTHK channels, potassium channel related protein; 99.01
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.98
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.97
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.96
3rvy_A285 ION transport protein; tetrameric ION channel, vol 98.95
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.95
1lnq_A 336 MTHK channels, potassium channel related protein; 98.9
4f4l_A112 ION transport protein; alpha helical membrane prot 98.84
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 98.83
4gx0_A565 TRKA domain protein; membrane protein, ION channel 98.79
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 98.72
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 97.63
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 97.63
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 96.13
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 96.07
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 96.03
2lcm_A28 Voltage-dependent N-type calcium channel subunit; 93.59
4f4l_A112 ION transport protein; alpha helical membrane prot 92.2
3kg2_A 823 Glutamate receptor 2; ION channel, membrane protei 91.72
1qg9_A26 Protein (sodium channel protein, brain II alpha su 82.91
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
Probab=100.00  E-value=2.8e-43  Score=392.81  Aligned_cols=245  Identities=47%  Similarity=0.853  Sum_probs=199.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccc----cccccCCccccccccccCchhHHHHHHHHHHHHHHHHHHHH
Q psy13136        353 KIIGVVSVFFICISILSFCLKTHPDMRVPVIHNIT----VRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWFTFEILMR  428 (695)
Q Consensus       353 ~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iF~~E~~lk  428 (695)
                      ++|+++++++|++|+++++++|+|+++......-.    ....++. . ...........++.++|++|+++|++|+++|
T Consensus       182 ~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~ie~i~~~iFtiE~ilR  259 (514)
T 2r9r_B          182 RIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQS-T-IGYQQSTSFTDPFFIVETLCIIWFSFEFLVR  259 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHH-H-HSSCCCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccc-c-ccccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            46777888888888888888887764421000000    0000000 0 0001223367789999999999999999999


Q ss_pred             HhcccccccccccccchhhhhhHhHHHHHHHHHhhhhc----cchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy13136        429 FISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASH----LENADILEFFSIIRIMRLFKLTRHSSGLKILMQTFRAS  504 (695)
Q Consensus       429 ~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~----~~~~~~l~~lRllRllR~lkl~r~~~~l~~l~~~l~~s  504 (695)
                      +++++.+++|++++||++|+++++|+++.++.......    ......++++|++|++|++|++|+.++++.+..++..+
T Consensus       260 ~~~~~~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s  339 (514)
T 2r9r_B          260 FFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKAS  339 (514)
T ss_dssp             HHHSSCSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHT
T ss_pred             HHhCCcHHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999998876532211    11156889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhhhhcccccCCCccchhhHHHHHHHHHHHHHHH
Q psy13136        505 AKELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYVGMFVGALCALAGVLTI  584 (695)
Q Consensus       505 ~~~l~~~~~ll~l~~~ifa~l~~~~e~~~~~~~~~f~~~~~aly~~~~tltTvGyGDi~p~t~~g~~~~~~~~l~g~~~~  584 (695)
                      .+.+..+++++++++++||+++|++|+  .+++.+|.+|++|+||+++||||+||||++|.|..|++++++++++|++++
T Consensus       340 ~~~l~~ll~~l~i~~~if~~~~~~~e~--~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l  417 (514)
T 2r9r_B          340 MRELGLLIFFLFIGVILFSSAVYFAEA--DERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTI  417 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhheeec--cCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHH
Confidence            999999998889999999999998886  456789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy13136        585 ALPVPVIVSNFAMYYSH  601 (695)
Q Consensus       585 ~l~ia~i~~~f~~~~~~  601 (695)
                      |+++|+|+++|+..+++
T Consensus       418 ~l~iavI~~~f~~~~~~  434 (514)
T 2r9r_B          418 ALPVPVIVSNFNYFYHR  434 (514)
T ss_dssp             HTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999987753
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus} Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens} Back     alignment and structure
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus} Back     alignment and structure
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 695
d1r3jc_103 f.14.1.1 (C:) Potassium channel protein {Streptomy 5e-22
d1r3jc_103 f.14.1.1 (C:) Potassium channel protein {Streptomy 5e-16
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 5e-18
d1xl4a2116 f.14.1.1 (A:23-138) Inward rectifier potassium cha 1e-12
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 5e-17
d1p7ba2116 f.14.1.1 (A:36-151) Inward rectifier potassium cha 6e-13
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 3e-15
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 1e-11
d2h8pc157 f.14.1.1 (C:22-78) Potassium channel protein {Stre 3e-15
d2h8pc157 f.14.1.1 (C:22-78) Potassium channel protein {Stre 1e-08
d1orsc_132 f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aer 2e-14
d3kvta_103 d.42.1.2 (A:) akv3.1 voltage-gated potassium chann 9e-04
d1nn7a_105 d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus 0.001
d1t1da_100 d.42.1.2 (A:) Shaker potassium channel {California 0.003
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 89.2 bits (221), Expect = 5e-22
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 506 KELTLLVFFLVLGIVIFASLVYYAERIQANPHNDFNSIPLGLWWALVTMTTVGYGDMAPK 565
           +        LV+ ++  + L   AER    P     + P  LWW++ T TTVGYGD+ P 
Sbjct: 6   RAAGAATVLLVIVLLAGSYLAVLAER--GAPGAQLITYPRALWWSVETATTVGYGDLYPV 63

Query: 566 TYVGMFVGALCALAGVLTIALPVPVIVSNFA 596
           T  G  V  +  +AG+ +  L    + + F 
Sbjct: 64  TLWGRCVAVVVMVAGITSFGLVTAALATWFV 94
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 57 Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 57 Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 132 Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 103 Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 105 Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query695
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 99.74
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.72
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.72
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.46
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.43
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.42
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.42
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 99.25
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 99.25
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 99.23
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 99.05
d3kvta_103 akv3.1 voltage-gated potassium channel {California 98.88
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 98.82
d1t1da_100 Shaker potassium channel {California sea hare (Apl 97.4
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 82.98
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.74  E-value=5.7e-18  Score=151.36  Aligned_cols=128  Identities=11%  Similarity=0.207  Sum_probs=112.1

Q ss_pred             hccccCCCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccCCccccccccccCchhHHHHHHHHHHHHH
Q psy13136        342 LFDEPYSSNSAKIIGVVSVFFICISILSFCLKTHPDMRVPVIHNITVRTTHNTSAWTLDKTQTNAHDAFFYIECLCNAWF  421 (695)
Q Consensus       342 ~~~~p~ss~~~~~f~~~i~~lI~~s~i~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iF  421 (695)
                      +++||       .++++++++|++|++.+++||+++..                        ++....+.++|++++++|
T Consensus         2 ~i~~p-------~~e~~i~~lillnvi~~~let~~~~~------------------------~~~~~~l~~~e~v~~~iF   50 (132)
T d1orsc_           2 VMEHP-------LVELGVSYAALLSVIVVVVEYTMQLS------------------------GEYLVRLYLVDLILVIIL   50 (132)
T ss_dssp             CCCCH-------HHHHHHHHHHHHHHHHHHHHHHSCCC------------------------SHHHHHHHHHHHHHHHHH
T ss_pred             cccch-------HHHHHHHHHHHHHHHHHHHHhccccc------------------------hhhhHHHHHHHHHHHHHH
Confidence            45677       99999999999999999999987644                        446788999999999999


Q ss_pred             HHHHHHHHhcccccccccccccchhhhhhHhHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy13136        422 TFEILMRFISSPRKCEFIKASVNVIDYIATLSFYIDLLLQKFASHLENADILEFFSIIRIMRLFKLTRHSSGLKILMQTF  501 (695)
Q Consensus       422 ~~E~~lk~~~~~~~~~y~~~~~n~~D~i~vi~~~i~~~~~~~~~~~~~~~~l~~lRllRllR~lkl~r~~~~l~~l~~~l  501 (695)
                      ++|+++|++++++++.|++  ||++|+++++|+++......      ....+|++|++|++|++|+.+..+.++.+..++
T Consensus        51 ~~E~~lrl~~~~~~~~~~~--~~~iDl~ai~p~~~~~~~~~------~~~~lr~lR~~R~~R~lrl~~~~~~~~~ll~ai  122 (132)
T d1orsc_          51 WADYAYRAYKSGDPAGYVK--KTLYEIPALVPAGLLALIEG------HLAGLGLFRLVRLLRFLRILLIISRGSKFLSAI  122 (132)
T ss_dssp             HHHHHHHHHHTTSTTTTTT--TCGGGTGGGSCHHHHHHHHH------HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccceeCC--cchHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998877774  69999999999998877653      346789999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy13136        502 RASAKEL  508 (695)
Q Consensus       502 ~~s~~~l  508 (695)
                      .++.+++
T Consensus       123 ~~s~~~l  129 (132)
T d1orsc_         123 ADAADKL  129 (132)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9888765
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure