Psyllid ID: psy13137

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MAYMNTAWKNGTRNLWRKTLARVQYTVKAILTKAVLAVGDAGVGGAGGKMNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYTSELLKKKKKKKKKKKKKKKKKDCHV
Secondary Structure (PSIPRED)
cccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEcccEEEEcHHHHHHccccccccHHHHcccccccccEEEEccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHcHccccccccHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEccEEEEEEHHHHcccccccccccccccccEEccccEEEEccccccHHHHHHHHHHccEcEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MAYMNTAWKNGTRNLWRKTLARVQYTVKAILTKAVLAvgdagvggaggkmnllNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEAlgnydpvlneyffdrhpgvFAQVLNYYRVFrlplgfkpwtVCMASYTSELLKKKKKKKKKKkkkkkkkdchv
Flexible Loop (DISEMBL)
maymntawkngtrnlwRKTLARVQYTVKAILTKAVLAVGDAGVGGAGGKMNLLNMMDAENRVVLNVGGIRHETykatlkkipatrlSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYtsellkkkkkkkkkkkkkkkkkdchv
Low Complexity Region (SEG)
MAYMNTAWKNGTRNLWRKTLARVQYTVKAILTKavlavgdagvggaggKMNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYTSELLkkkkkkkkkkkkkkkkkDCHV
Disordered region (IsUnstruct)
****NTAWKNGTRNLWRKTLARVQYTVKAILTKAVLAVGDAGVGGAGGKMNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYT*************************
Disordered Region (DISOPRED)
************************************************************RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYTSELLKKKKKKKKKKKKKKKKKDC**
Disordered Region (DISEMBL)
MAYMNTAWKNGTRNLWRKTLARVQYTVKAILTKAVLAVGDAGVGGAGGKMNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL**********************
Disordered Region (DISPRO)
*************NLWRKTLARVQYTVKAILTKAVLAV*****GGAGGKMNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYTSELLKKKKKKKKKKKKKKK******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYMNTAWKNGTRNLWRKTLARVQYTVKAILTKAVLAVGDAGVGGAGGKMNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYTxxxxxxxxxxxxxxxxxxxxxDCHV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
P17972	498	Potassium voltage-gated c	no	N/A	0.542	0.178	0.774	2e-35
G5EFC3	558	Potassium voltage-gated c	no	N/A	0.493	0.145	0.654	3e-27
Q01956	889	Potassium voltage-gated c	no	N/A	0.481	0.088	0.534	1e-19
Q63959	769	Potassium voltage-gated c	yes	N/A	0.481	0.102	0.534	1e-19
Q14003	757	Potassium voltage-gated c	yes	N/A	0.481	0.104	0.534	1e-19
P25122	585	Potassium voltage-gated c	no	N/A	0.506	0.141	0.5	2e-19
P15388	511	Potassium voltage-gated c	no	N/A	0.506	0.162	0.5	2e-19
P48547	511	Potassium voltage-gated c	no	N/A	0.506	0.162	0.5	2e-19
Q03721	635	Potassium voltage-gated c	no	N/A	0.506	0.130	0.415	2e-15
Q63734	625	Potassium voltage-gated c	no	N/A	0.506	0.132	0.411	4e-15

>sp|P17972|KCNAW_DROME Potassium voltage-gated channel protein Shaw OS=Drosophila melanogaster GN=Shaw PE=2 SV=1

 Score =  147 bits (372), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/93 (77%), Positives = 77/93 (82%), Gaps = 4/93 (4%)

Query: 50  MNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP 109
           MNL+NM D+ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEAL NYDP+LNEYFFDRHP
Sbjct: 1   MNLINM-DSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHP 59

Query: 110 GVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           GVFAQVLNYYR  +L     P  VC   +  EL
Sbjct: 60  GVFAQVLNYYRTGKL---HYPTDVCGPLFEEEL 89

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.
Drosophila melanogaster (taxid: 7227)

>sp|G5EFC3|KCNAG_CAEEL Potassium voltage-gated channel protein egl-36 OS=Caenorhabditis elegans GN=egl-36 PE=1 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/84 (65%), Positives = 65/84 (77%), Gaps = 3/84 (3%)

Query: 59  ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNY 118
           + R+VLNVGG+RHETY+ATLKKIPATRLSRLT +L N+DP+LNEYFFDRHP VFA +LNY
Sbjct: 36  DERIVLNVGGVRHETYQATLKKIPATRLSRLTPSLANFDPLLNEYFFDRHPAVFAMILNY 95

Query: 119 YRVFRLPLGFKPWTVCMASYTSEL 142
           YR  +L     P  VC   +  EL
Sbjct: 96  YRTGKL---HYPTDVCGPLFEEEL 116

Voltage-dependent potassium channel involved in the excitation of muscles operating egg-laying and defecation.

Caenorhabditis elegans (taxid: 6239)

>sp|Q01956|KCNC3_RAT Potassium voltage-gated channel subfamily C member 3 OS=Rattus norvegicus GN=Kcnc3 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/86 (53%), Positives = 60/86 (69%), Gaps = 7/86 (8%)

Query: 61  RVVLNVGGIRHETYKATLKKIPATRLSRLTE----ALGNYDPVLNEYFFDRHPGVFAQVL 116
           ++V+NVGG+RHETY++TL+ +P TRL+ LTE    A  +YDP  +E+FFDRHPGVFA VL
Sbjct: 91  KIVINVGGVRHETYRSTLRTLPGTRLAGLTEPEAAARFDYDPGTDEFFFDRHPGVFAYVL 150

Query: 117 NYYRVFRLPLGFKPWTVCMASYTSEL 142
           NYYR  +L     P  VC   +  EL
Sbjct: 151 NYYRTGKLHC---PADVCGPLFEEEL 173

This protein mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

>sp|Q63959|KCNC3_MOUSE Potassium voltage-gated channel subfamily C member 3 OS=Mus musculus GN=Kcnc3 PE=2 SV=2

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/86 (53%), Positives = 60/86 (69%), Gaps = 7/86 (8%)

Query: 61  RVVLNVGGIRHETYKATLKKIPATRLSRLTE----ALGNYDPVLNEYFFDRHPGVFAQVL 116
           ++V+NVGG+RHETY++TL+ +P TRL+ LTE    A  +YDP  +E+FFDRHPGVFA VL
Sbjct: 90  KIVINVGGVRHETYRSTLRTLPGTRLAGLTEPEAAARFDYDPGTDEFFFDRHPGVFAYVL 149

Query: 117 NYYRVFRLPLGFKPWTVCMASYTSEL 142
           NYYR  +L     P  VC   +  EL
Sbjct: 150 NYYRTGKLHC---PADVCGPLFEEEL 172

This protein mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Mus musculus (taxid: 10090)

>sp|Q14003|KCNC3_HUMAN Potassium voltage-gated channel subfamily C member 3 OS=Homo sapiens GN=KCNC3 PE=1 SV=3

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/86 (53%), Positives = 60/86 (69%), Gaps = 7/86 (8%)

Query: 61  RVVLNVGGIRHETYKATLKKIPATRLSRLTE----ALGNYDPVLNEYFFDRHPGVFAQVL 116
           ++V+NVGG+RHETY++TL+ +P TRL+ LTE    A  +YDP  +E+FFDRHPGVFA VL
Sbjct: 89  KIVINVGGVRHETYRSTLRTLPGTRLAGLTEPEAAARFDYDPGADEFFFDRHPGVFAYVL 148

Query: 117 NYYRVFRLPLGFKPWTVCMASYTSEL 142
           NYYR  +L     P  VC   +  EL
Sbjct: 149 NYYRTGKLHC---PADVCGPLFEEEL 171

This protein mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Homo sapiens (taxid: 9606)

>sp|P25122|KCNC1_RAT Potassium voltage-gated channel subfamily C member 1 OS=Rattus norvegicus GN=Kcnc1 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 7/90 (7%)

Query: 57  DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALG----NYDPVLNEYFFDRHPGVF 112
           D   R+V+NVGG RH+TY++TL+ +P TRL+ L E       +YDP  +E+FFDRHPGVF
Sbjct: 5   DESERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVF 64

Query: 113 AQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           A +LNYYR  +L     P  VC   Y  EL
Sbjct: 65  AHILNYYRTGKLHC---PADVCGPLYEEEL 91

This protein mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

>sp|P15388|KCNC1_MOUSE Potassium voltage-gated channel subfamily C member 1 OS=Mus musculus GN=Kcnc1 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 7/90 (7%)

Query: 57  DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALG----NYDPVLNEYFFDRHPGVF 112
           D   R+V+NVGG RH+TY++TL+ +P TRL+ L E       +YDP  +E+FFDRHPGVF
Sbjct: 5   DESERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVF 64

Query: 113 AQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           A +LNYYR  +L     P  VC   Y  EL
Sbjct: 65  AHILNYYRTGKLHC---PADVCGPLYEEEL 91

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Mus musculus (taxid: 10090)

>sp|P48547|KCNC1_HUMAN Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 7/90 (7%)

Query: 57  DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALG----NYDPVLNEYFFDRHPGVF 112
           D   R+V+NVGG RH+TY++TL+ +P TRL+ L E       +YDP  +E+FFDRHPGVF
Sbjct: 5   DESERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVF 64

Query: 113 AQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           A +LNYYR  +L     P  VC   Y  EL
Sbjct: 65  AHILNYYRTGKLHC---PADVCGPLYEEEL 91

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Homo sapiens (taxid: 9606)

>sp|Q03721|KCNC4_HUMAN Potassium voltage-gated channel subfamily C member 4 OS=Homo sapiens GN=KCNC4 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 18/101 (17%)

Query: 57  DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLN--------------- 101
           +A  ++++NVGG RHETY++TL+ +P TRL+ L +  G   P  +               
Sbjct: 33  EASEKIIINVGGTRHETYRSTLRTLPGTRLAWLADPDGGGRPETDGGGVGSSGSSGGGGC 92

Query: 102 EYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           E+FFDRHPGVFA VLNYYR  +L     P  VC   +  EL
Sbjct: 93  EFFFDRHPGVFAYVLNYYRTGKLHC---PADVCGPLFEEEL 130

This protein mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Homo sapiens (taxid: 9606)

>sp|Q63734|KCNC4_RAT Potassium voltage-gated channel subfamily C member 4 OS=Rattus norvegicus GN=Kcnc4 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 19/102 (18%)

Query: 57  DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLN--------------- 101
           +A  ++++NVGG RHETY++TL+ +P TRL+ L +  G   P  +               
Sbjct: 33  EASEKIIINVGGTRHETYRSTLRTLPGTRLAWLADPDGGGRPESDGGGAGSSGSSGGGGG 92

Query: 102 -EYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
            E+FFDRHPGVFA VLNYYR  +L     P  VC   +  EL
Sbjct: 93  CEFFFDRHPGVFAYVLNYYRTGKLHC---PADVCGPLFEEEL 131

This protein mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
158296932	512	AGAP008201-PA [Anopheles gambiae str. PE	0.548	0.175	0.795	1e-35
157115247	505	voltage-gated potassium channel [Aedes a	0.542	0.176	0.795	2e-34
332025184	551	Potassium voltage-gated channel protein	0.542	0.161	0.784	5e-34
270012488	544	hypothetical protein TcasGA2_TC006643 [T	0.542	0.163	0.784	5e-34
195387662	618	GJ21169 [Drosophila virilis] gi|19414897	0.567	0.150	0.752	8e-34
307211409	532	Potassium voltage-gated channel protein	0.542	0.167	0.784	9e-34
221330674	619	shaker cognate w, isoform C [Drosophila	0.567	0.150	0.752	9e-34
17136468	498	shaker cognate w, isoform A [Drosophila	0.542	0.178	0.774	1e-33
28574020	604	shaker cognate w, isoform B [Drosophila	0.542	0.147	0.774	1e-33
195576424	505	GD23250 [Drosophila simulans] gi|1941900	0.542	0.176	0.774	1e-33

>gi|158296932|ref|XP_317267.4| AGAP008201-PA [Anopheles gambiae str. PEST] gi|157014950|gb|EAA12501.4| AGAP008201-PA [Anopheles gambiae str. PEST]

 Score =  154 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/93 (79%), Positives = 78/93 (83%), Gaps = 3/93 (3%)

Query: 50  MNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP 109
           MNL+N MD+ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP
Sbjct: 1   MNLMNNMDSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP 60

Query: 110 GVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           GVFAQVLNYYR  +L     P  VC   +  EL
Sbjct: 61  GVFAQVLNYYRTGKL---HYPTDVCGPLFEEEL 90

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115247|ref|XP_001658163.1| voltage-gated potassium channel [Aedes aegypti] gi|108876970|gb|EAT41195.1| AAEL007143-PA [Aedes aegypti]

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/93 (79%), Positives = 78/93 (83%), Gaps = 4/93 (4%)

Query: 50  MNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP 109
           MNL+NM D+ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP
Sbjct: 1   MNLMNM-DSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP 59

Query: 110 GVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           GVFAQVLNYYR  +L     P  VC   +  EL
Sbjct: 60  GVFAQVLNYYRTGKL---HYPTDVCGPLFEEEL 89

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025184|gb|EGI65364.1| Potassium voltage-gated channel protein Shaw [Acromyrmex echinatior]

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/93 (78%), Positives = 77/93 (82%), Gaps = 4/93 (4%)

Query: 50  MNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP 109
           MNL+NM DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEAL NYDP+LNEYFFDRHP
Sbjct: 1   MNLINM-DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHP 59

Query: 110 GVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           GVFAQVLNYYR  +L     P  VC   +  EL
Sbjct: 60  GVFAQVLNYYRTGKL---HYPTDVCGPLFEEEL 89

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012488|gb|EFA08936.1| hypothetical protein TcasGA2_TC006643 [Tribolium castaneum]

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/93 (78%), Positives = 77/93 (82%), Gaps = 4/93 (4%)

Query: 50  MNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP 109
           MNL+NM DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEAL NYDP+LNEYFFDRHP
Sbjct: 1   MNLINM-DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHP 59

Query: 110 GVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           GVFAQVLNYYR  +L     P  VC   +  EL
Sbjct: 60  GVFAQVLNYYRTGKL---HYPSDVCGPLFEEEL 89

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195387662|ref|XP_002052513.1| GJ21169 [Drosophila virilis] gi|194148970|gb|EDW64668.1| GJ21169 [Drosophila virilis]

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 73/97 (75%), Positives = 78/97 (80%), Gaps = 4/97 (4%)

Query: 46  AGGKMNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF 105
           A   MNL+NM D+ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEAL NYDP+LNEYFF
Sbjct: 12  AHAAMNLINM-DSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFF 70

Query: 106 DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           DRHPGVFAQVLNYYR  +L     P  VC   +  EL
Sbjct: 71  DRHPGVFAQVLNYYRTGKL---HYPTDVCGPLFEEEL 104

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211409|gb|EFN87536.1| Potassium voltage-gated channel protein Shaw [Harpegnathos saltator]

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 73/93 (78%), Positives = 77/93 (82%), Gaps = 4/93 (4%)

Query: 50  MNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP 109
           MNL+NM DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEAL NYDP+LNEYFFDRHP
Sbjct: 1   MNLINM-DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHP 59

Query: 110 GVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           GVFAQVLNYYR  +L     P  VC   +  EL
Sbjct: 60  GVFAQVLNYYRTGKL---HYPTDVCGPLFEEEL 89

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330674|ref|NP_001137782.1| shaker cognate w, isoform C [Drosophila melanogaster] gi|220901931|gb|ACL82989.1| shaker cognate w, isoform C [Drosophila melanogaster]

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 73/97 (75%), Positives = 78/97 (80%), Gaps = 4/97 (4%)

Query: 46  AGGKMNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF 105
           A   MNL+NM D+ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEAL NYDP+LNEYFF
Sbjct: 12  AHAAMNLINM-DSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFF 70

Query: 106 DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           DRHPGVFAQVLNYYR  +L     P  VC   +  EL
Sbjct: 71  DRHPGVFAQVLNYYRTGKL---HYPTDVCGPLFEEEL 104

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17136468|ref|NP_476721.1| shaker cognate w, isoform A [Drosophila melanogaster] gi|194855785|ref|XP_001968613.1| GG24961 [Drosophila erecta] gi|195471153|ref|XP_002087870.1| GE18252 [Drosophila yakuba] gi|116444|sp|P17972.1|KCNAW_DROME RecName: Full=Potassium voltage-gated channel protein Shaw; AltName: Full=Shaw2 gi|158461|gb|AAA28897.1| Shaw2 protein [Drosophila melanogaster] gi|7295767|gb|AAF51069.1| shaker cognate w, isoform A [Drosophila melanogaster] gi|190660480|gb|EDV57672.1| GG24961 [Drosophila erecta] gi|194173971|gb|EDW87582.1| GE18252 [Drosophila yakuba]

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/93 (77%), Positives = 77/93 (82%), Gaps = 4/93 (4%)

Query: 50  MNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP 109
           MNL+NM D+ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEAL NYDP+LNEYFFDRHP
Sbjct: 1   MNLINM-DSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHP 59

Query: 110 GVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           GVFAQVLNYYR  +L     P  VC   +  EL
Sbjct: 60  GVFAQVLNYYRTGKL---HYPTDVCGPLFEEEL 89

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28574020|ref|NP_722937.2| shaker cognate w, isoform B [Drosophila melanogaster] gi|17946111|gb|AAL49097.1| RE54962p [Drosophila melanogaster] gi|28380273|gb|AAF51068.3| shaker cognate w, isoform B [Drosophila melanogaster]

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/93 (77%), Positives = 77/93 (82%), Gaps = 4/93 (4%)

Query: 50  MNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP 109
           MNL+NM D+ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEAL NYDP+LNEYFFDRHP
Sbjct: 1   MNLINM-DSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHP 59

Query: 110 GVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           GVFAQVLNYYR  +L     P  VC   +  EL
Sbjct: 60  GVFAQVLNYYRTGKL---HYPTDVCGPLFEEEL 89

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195576424|ref|XP_002078076.1| GD23250 [Drosophila simulans] gi|194190085|gb|EDX03661.1| GD23250 [Drosophila simulans]

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/93 (77%), Positives = 77/93 (82%), Gaps = 4/93 (4%)

Query: 50  MNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP 109
           MNL+NM D+ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEAL NYDP+LNEYFFDRHP
Sbjct: 1   MNLINM-DSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHP 59

Query: 110 GVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
           GVFAQVLNYYR  +L     P  VC   +  EL
Sbjct: 60  GVFAQVLNYYRTGKL---HYPTDVCGPLFEEEL 89

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
FB|FBgn0003386	498	Shaw "Shaker cognate w" [Droso	0.542	0.178	0.774	2.3e-32
WB|WBGene00004793	479	shw-3 [Caenorhabditis elegans	0.512	0.175	0.701	1.4e-27
WB|WBGene00008819	619	shw-1 [Caenorhabditis elegans	0.512	0.135	0.678	1.3e-25
WB|WBGene00001202	558	egl-36 [Caenorhabditis elegans	0.493	0.145	0.654	1.9e-24
FB|FBgn0085395	941	Shawl "Shaw-like" [Drosophila	0.530	0.092	0.637	5.1e-22
ZFIN|ZDB-GENE-061220-10	609	kcnc1a "potassium voltage-gate	0.506	0.136	0.511	2e-17
UNIPROTKB|E7ETH1	728	KCNC3 "Potassium voltage-gated	0.481	0.108	0.534	2.2e-17
UNIPROTKB|E9PTP7	730	Kcnc3 "Potassium voltage-gated	0.481	0.108	0.534	2.2e-17
UNIPROTKB|Q14003	757	KCNC3 "Potassium voltage-gated	0.481	0.104	0.534	2.4e-17
MGI|MGI:96669	769	Kcnc3 "potassium voltage gated	0.481	0.102	0.534	2.4e-17

FB|FBgn0003386 Shaw "Shaker cognate w" [Drosophila melanogaster (taxid:7227)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 72/93 (77%), Positives = 77/93 (82%)

Query:    50 MNLLNMMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHP 109
             MNL+NM D+ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEAL NYDP+LNEYFFDRHP
Sbjct:     1 MNLINM-DSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHP 59

Query:   110 GVFAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
             GVFAQVLNYYR  +L     P  VC   +  EL
Sbjct:    60 GVFAQVLNYYRTGKLHY---PTDVCGPLFEEEL 89

GO:0005886 "plasma membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=NAS

GO:0005249 "voltage-gated potassium channel activity" evidence=NAS;TAS

GO:0006813 "potassium ion transport" evidence=IEA;NAS;TAS

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA;TAS

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0030431 "sleep" evidence=IMP

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

WB|WBGene00004793 shw-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 311 (114.5 bits), Expect = 1.4e-27, P = 1.4e-27
 Identities = 61/87 (70%), Positives = 68/87 (78%)

Query:    56 MDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQV 115
             MD+E R++LNVGG+RHETYK TLKKIPATRLSRLT  L NYDPVLNEYFFDRHPGVFAQ+
Sbjct:     1 MDSEYRIILNVGGVRHETYKHTLKKIPATRLSRLTTNLANYDPVLNEYFFDRHPGVFAQI 60

Query:   116 LNYYRVFRLPLGFKPWTVCMASYTSEL 142
             LNYYR  +L     P  VC   +  EL
Sbjct:    61 LNYYRTGKLHY---PLDVCGPLFEEEL 84

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA;IDA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0032590 "dendrite membrane" evidence=IDA

GO:0071804 "cellular potassium ion transport" evidence=IDA

GO:0032809 "neuronal cell body membrane" evidence=IDA

GO:0030673 "axolemma" evidence=IDA

WB|WBGene00008819 shw-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 298 (110.0 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 59/87 (67%), Positives = 65/87 (74%)

Query:    56 MDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQV 115
             MD E+RV+LNVGGIRHETY   LKKIPATRLSRLT  L NYDPVLNEYFFDRHPGVF+ +
Sbjct:    97 MDTEHRVILNVGGIRHETYSHVLKKIPATRLSRLTPNLANYDPVLNEYFFDRHPGVFSMI 156

Query:   116 LNYYRVFRLPLGFKPWTVCMASYTSEL 142
             LNYYR  +L     P  VC   +  EL
Sbjct:   157 LNYYRTGKLHY---PTNVCGPLFEEEL 180

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00001202 egl-36 [Caenorhabditis elegans (taxid:6239)]

 Score = 286 (105.7 bits), Expect = 1.9e-24, P = 1.9e-24
 Identities = 55/84 (65%), Positives = 65/84 (77%)

Query:    59 ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNY 118
             + R+VLNVGG+RHETY+ATLKKIPATRLSRLT +L N+DP+LNEYFFDRHP VFA +LNY
Sbjct:    36 DERIVLNVGGVRHETYQATLKKIPATRLSRLTPSLANFDPLLNEYFFDRHPAVFAMILNY 95

Query:   119 YRVFRLPLGFKPWTVCMASYTSEL 142
             YR  +L     P  VC   +  EL
Sbjct:    96 YRTGKLHY---PTDVCGPLFEEEL 116

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IMP

GO:0034220 "ion transmembrane transport" evidence=IDA

GO:0005244 "voltage-gated ion channel activity" evidence=IDA

FB|FBgn0085395 Shawl "Shaw-like" [Drosophila melanogaster (taxid:7227)]

 Score = 268 (99.4 bits), Expect = 5.1e-22, P = 5.1e-22
 Identities = 58/91 (63%), Positives = 65/91 (71%)

Query:    53 LNMMDAENRVVLNVG-GIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGV 111
             +N   ++N V  N G   R+ETYKATLKKIPATRLSRLTEAL NYDPVLNEYFFDRHPGV
Sbjct:     1 MNANLSDNLVNNNYGLYCRYETYKATLKKIPATRLSRLTEALANYDPVLNEYFFDRHPGV 60

Query:   112 FAQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
             F Q+LNYYR  +L     P  VC   +  EL
Sbjct:    61 FTQILNYYRTGKLHY---PTDVCGPLFEEEL 88

GO:0005249 "voltage-gated potassium channel activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

ZFIN|ZDB-GENE-061220-10 kcnc1a "potassium voltage-gated channel, Shaw-related subfamily, member 1a" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 46/90 (51%), Positives = 61/90 (67%)

Query:    57 DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGN----YDPVLNEYFFDRHPGVF 112
             D ++RVV+NVGGIRH+TY++TL+ +P TRL+ L E   +    YD  ++E+FFDRHPGVF
Sbjct:     5 DEKDRVVINVGGIRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDAQIDEFFFDRHPGVF 64

Query:   113 AQVLNYYRVFRLPLGFKPWTVCMASYTSEL 142
             A +LNYYR  +L     P  VC   Y  EL
Sbjct:    65 AHILNYYRTGKLHC---PADVCGPLYEEEL 91

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005267 "potassium channel activity" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0034765 "regulation of ion transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|E7ETH1 KCNC3 "Potassium voltage-gated channel subfamily C member 3" [Homo sapiens (taxid:9606)]

 Score = 223 (83.6 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 46/86 (53%), Positives = 60/86 (69%)

Query:    61 RVVLNVGGIRHETYKATLKKIPATRLSRLTE----ALGNYDPVLNEYFFDRHPGVFAQVL 116
             ++V+NVGG+RHETY++TL+ +P TRL+ LTE    A  +YDP  +E+FFDRHPGVFA VL
Sbjct:    89 KIVINVGGVRHETYRSTLRTLPGTRLAGLTEPEAAARFDYDPGADEFFFDRHPGVFAYVL 148

Query:   117 NYYRVFRLPLGFKPWTVCMASYTSEL 142
             NYYR  +L     P  VC   +  EL
Sbjct:   149 NYYRTGKLHC---PADVCGPLFEEEL 171

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|E9PTP7 Kcnc3 "Potassium voltage-gated channel subfamily C member 3" [Rattus norvegicus (taxid:10116)]

 Score = 223 (83.6 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 46/86 (53%), Positives = 60/86 (69%)

Query:    61 RVVLNVGGIRHETYKATLKKIPATRLSRLTE----ALGNYDPVLNEYFFDRHPGVFAQVL 116
             ++V+NVGG+RHETY++TL+ +P TRL+ LTE    A  +YDP  +E+FFDRHPGVFA VL
Sbjct:    91 KIVINVGGVRHETYRSTLRTLPGTRLAGLTEPEAAARFDYDPGTDEFFFDRHPGVFAYVL 150

Query:   117 NYYRVFRLPLGFKPWTVCMASYTSEL 142
             NYYR  +L     P  VC   +  EL
Sbjct:   151 NYYRTGKLHC---PADVCGPLFEEEL 173

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|Q14003 KCNC3 "Potassium voltage-gated channel subfamily C member 3" [Homo sapiens (taxid:9606)]

 Score = 223 (83.6 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 46/86 (53%), Positives = 60/86 (69%)

Query:    61 RVVLNVGGIRHETYKATLKKIPATRLSRLTE----ALGNYDPVLNEYFFDRHPGVFAQVL 116
             ++V+NVGG+RHETY++TL+ +P TRL+ LTE    A  +YDP  +E+FFDRHPGVFA VL
Sbjct:    89 KIVINVGGVRHETYRSTLRTLPGTRLAGLTEPEAAARFDYDPGADEFFFDRHPGVFAYVL 148

Query:   117 NYYRVFRLPLGFKPWTVCMASYTSEL 142
             NYYR  +L     P  VC   +  EL
Sbjct:   149 NYYRTGKLHC---PADVCGPLFEEEL 171

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0032590 "dendrite membrane" evidence=IEA

GO:0032809 "neuronal cell body membrane" evidence=IEA

GO:0043679 "axon terminus" evidence=IEA

GO:0046928 "regulation of neurotransmitter secretion" evidence=IEA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0006813 "potassium ion transport" evidence=TAS

GO:0005249 "voltage-gated potassium channel activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

MGI|MGI:96669 Kcnc3 "potassium voltage gated channel, Shaw-related subfamily, member 3" [Mus musculus (taxid:10090)]

 Score = 223 (83.6 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 46/86 (53%), Positives = 60/86 (69%)

Query:    61 RVVLNVGGIRHETYKATLKKIPATRLSRLTE----ALGNYDPVLNEYFFDRHPGVFAQVL 116
             ++V+NVGG+RHETY++TL+ +P TRL+ LTE    A  +YDP  +E+FFDRHPGVFA VL
Sbjct:    90 KIVINVGGVRHETYRSTLRTLPGTRLAGLTEPEAAARFDYDPGTDEFFFDRHPGVFAYVL 149

Query:   117 NYYRVFRLPLGFKPWTVCMASYTSEL 142
             NYYR  +L     P  VC   +  EL
Sbjct:   150 NYYRTGKLHC---PADVCGPLFEEEL 172

GO:0005216 "ion channel activity" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0005267 "potassium channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030673 "axolemma" evidence=IDA

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0032590 "dendrite membrane" evidence=IDA

GO:0032809 "neuronal cell body membrane" evidence=IDA

GO:0034765 "regulation of ion transmembrane transport" evidence=IEA

GO:0043679 "axon terminus" evidence=IDA

GO:0046928 "regulation of neurotransmitter secretion" evidence=IMP

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q63959	KCNC3_MOUSE	No assigned EC number	0.5348	0.4817	0.1027	yes	N/A
Q14003	KCNC3_HUMAN	No assigned EC number	0.5348	0.4817	0.1043	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	164
pfam02214	92	pfam02214, K_tetra, K+ channel tetramerisation dom	1e-30
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	1e-09
pfam03343	603	pfam03343, SART-1, SART-1 family	0.002

>gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain

 Score =  106 bits (266), Expect = 1e-30
 Identities = 39/82 (47%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 62  VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV 121
           V LNVGG R ET K+TL + P T L RL +    YD   NEYFFDR P  F  +LN+YR 
Sbjct: 1   VRLNVGGKRFETSKSTLTRFPDTLLGRLLKRCDFYDDDTNEYFFDRSPKHFETILNFYRT 60

Query: 122 F-RLPLGFKPWTVCMASYTSEL 142
             +L     P  VC+ S+  EL
Sbjct: 61  GGKLHR---PEEVCLDSFLEEL 79

The N-terminal, cytoplasmic tetramerisation domain (T1) of voltage-gated K+ channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels. It is distantly related to the BTB/POZ domain pfam00651. Length = 92

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 62  VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
           V L VGG +   +KA L        +  +            Y  D  P  F  +LN+  
Sbjct: 2   VTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFK-ESDKSEIYLDDVSPEDFRALLNFLY 59

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 16/22 (72%), Positives = 20/22 (90%)

Query: 140 SELLKKKKKKKKKKKKKKKKKD 161
           SE++K KK KKKKKKKKK++KD
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKD 291

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	99.92
KOG3713|consensus	477		99.9
KOG2715|consensus	210		99.82
KOG2714|consensus	465		99.81
KOG4390|consensus	632		99.79
KOG1665|consensus	302		99.75
KOG2716|consensus	230		99.74
KOG2723|consensus	221		99.72
KOG1545|consensus	507		99.71
KOG3840|consensus	438		98.59
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	98.43
PHA03098	534	kelch-like protein; Provisional	93.73
PHA02790	480	Kelch-like protein; Provisional	87.86
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	87.5
PHA02713	557	hypothetical protein; Provisional	85.02

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=99.92  E-value=6.7e-26  Score=162.59  Aligned_cols=85  Identities=38%  Similarity=0.584  Sum_probs=73.1

Q ss_pred             EEEEeCCeEEEeeHHHHhcCCCccccchhhh--cCCCCCCCCeEEEecCCCChHHHhccccC-CCCCCCCCCCCCCHHHH
Q psy13137         62 VVLNVGGIRHETYKATLKKIPATRLSRLTEA--LGNYDPVLNEYFFDRHPGVFAQVLNYYRV-FRLPLGFKPWTVCMASY  138 (164)
Q Consensus        62 I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~--~~~~~~~~~eyFIDRDp~~F~~ILnyLRt-G~L~~~~~P~~v~~~~f  138 (164)
                      |+|||||++|+|+++||.++|+|+|+.+++.  ....++++++|||||||.+|++||+|||+ |.++   .|.+.+...|
T Consensus         1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~---~~~~~~~~~l   77 (94)
T PF02214_consen    1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLP---IPDEICLEEL   77 (94)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB------TTS-HHHH
T ss_pred             CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccC---CCCchhHHHH
Confidence            7899999999999999999999999999974  34566799999999999999999999999 7888   8889999999


Q ss_pred             HHHHHHHHHhh
Q psy13137        139 TSELLKKKKKK  149 (164)
Q Consensus       139 ~eEl~y~~~~~  149 (164)
                      .+|++||....
T Consensus        78 ~~Ea~fy~l~~   88 (94)
T PF02214_consen   78 LEEAEFYGLDE   88 (94)
T ss_dssp             HHHHHHHT-HH
T ss_pred             HHHHHHcCCCc
Confidence            99999998765

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>KOG3713|consensus

Probab=99.90  E-value=1.7e-24  Score=195.96  Aligned_cols=90  Identities=53%  Similarity=0.845  Sum_probs=84.5

Q ss_pred             CCCCeEEEEeCCeEEEeeHHHHhcCCCccccchhh---------hcCCCCCCCCeEEEecCCCChHHHhccccCCCCCCC
Q psy13137         57 DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTE---------ALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLG  127 (164)
Q Consensus        57 ~~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~---------~~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~  127 (164)
                      ..++.|+|||||++|++.++||.++|.|+|++|..         .|++||+.++||||||+|.+|.+||||||+|+||  
T Consensus        28 ~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrtGkLH--  105 (477)
T KOG3713|consen   28 ALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRTGKLH--  105 (477)
T ss_pred             CcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhcCeec--
Confidence            45679999999999999999999999999999875         2889999999999999999999999999999999  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhh
Q psy13137        128 FKPWTVCMASYTSELLKKKKKK  149 (164)
Q Consensus       128 ~~P~~v~~~~f~eEl~y~~~~~  149 (164)
                       +|.++|+..|.+||+||.+..
T Consensus       106 -~p~~vC~~~F~eEL~yWgI~~  126 (477)
T KOG3713|consen  106 -VPADVCPLSFEEELDYWGIDE  126 (477)
T ss_pred             -cccccchHHHHHHHHHhCCCh
Confidence             999999999999999998754

>KOG2715|consensus

Probab=99.82  E-value=4e-21  Score=155.78  Aligned_cols=86  Identities=30%  Similarity=0.271  Sum_probs=77.8

Q ss_pred             CCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcC---CCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCH
Q psy13137         59 ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALG---NYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCM  135 (164)
Q Consensus        59 ~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~---~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~  135 (164)
                      +.+|+|||||+.|.|+++||.+.|.|+|+++++...   .-.+++|+|||||||..|..||||||+|+|.   +.. +..
T Consensus        20 s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklv---l~~-l~e   95 (210)
T KOG2715|consen   20 SLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLV---LNK-LSE   95 (210)
T ss_pred             eEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhh---hhh-hhh
Confidence            489999999999999999999999999999997532   2346999999999999999999999999999   666 999


Q ss_pred             HHHHHHHHHHHHh
Q psy13137        136 ASYTSELLKKKKK  148 (164)
Q Consensus       136 ~~f~eEl~y~~~~  148 (164)
                      +..++|++||..-
T Consensus        96 eGvL~EAefyn~~  108 (210)
T KOG2715|consen   96 EGVLEEAEFYNDP  108 (210)
T ss_pred             hccchhhhccCCh
Confidence            9999999999864

>KOG2714|consensus

Probab=99.81  E-value=3.3e-20  Score=166.45  Aligned_cols=88  Identities=30%  Similarity=0.325  Sum_probs=77.4

Q ss_pred             CCCCeEEEEeCCeEEEeeHHHHhcCC-Cccccchhhh-cCCCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCC
Q psy13137         57 DAENRVVLNVGGIRHETYKATLKKIP-ATRLSRLTEA-LGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVC  134 (164)
Q Consensus        57 ~~~~~I~LNVGG~~F~T~~sTL~r~P-~S~L~~l~~~-~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~  134 (164)
                      .++++|+|||||++|+|+++||+..| ||+|+.|++. .....++.+++||||||++|..||||||||.|+   +|..+.
T Consensus         8 ~~~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~---~~g~~~   84 (465)
T KOG2714|consen    8 SSGDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLD---ASGVFP   84 (465)
T ss_pred             CCCceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCC---CccCch
Confidence            46799999999999999999999998 9999999863 223457889999999999999999999999999   777777


Q ss_pred             HHHHHHHHHHHHH
Q psy13137        135 MASYTSELLKKKK  147 (164)
Q Consensus       135 ~~~f~eEl~y~~~  147 (164)
                      ...+.+|+.||-.
T Consensus        85 ~~llhdEA~fYGl   97 (465)
T KOG2714|consen   85 ERLLHDEAMFYGL   97 (465)
T ss_pred             hhhhhhhhhhcCc
Confidence            7778889999953

>KOG4390|consensus

Probab=99.79  E-value=3.4e-20  Score=166.34  Aligned_cols=85  Identities=41%  Similarity=0.652  Sum_probs=78.1

Q ss_pred             CCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCHHH
Q psy13137         58 AENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMAS  137 (164)
Q Consensus        58 ~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~  137 (164)
                      .++.+.|||.|++|+|-+.||.+||+++|+.-.. .-.|+.+++||||||||++|++||||||+|+||   .|..-|+..
T Consensus        38 ~De~lvlNvSGrRFeTWknTLeryPdTLLGSsEk-eFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLH---yPR~ECi~A  113 (632)
T KOG4390|consen   38 QDELLVLNVSGRRFETWKNTLERYPDTLLGSSEK-EFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLH---YPRHECISA  113 (632)
T ss_pred             cCcEEEEeccccchhHHHhHHHhCchhhhCCcch-heeecCCcccccccCChHHHHHHHHHhhcCccc---CchHHHHHH
Confidence            6789999999999999999999999999997433 236889999999999999999999999999999   999999999


Q ss_pred             HHHHHHHHH
Q psy13137        138 YTSELLKKK  146 (164)
Q Consensus       138 f~eEl~y~~  146 (164)
                      +-|||.||-
T Consensus       114 yDeELaF~G  122 (632)
T KOG4390|consen  114 YDEELAFYG  122 (632)
T ss_pred             hhhhhhHhc
Confidence            999998874

>KOG1665|consensus

Probab=99.75  E-value=1.3e-18  Score=146.90  Aligned_cols=91  Identities=23%  Similarity=0.253  Sum_probs=80.5

Q ss_pred             CCCCeEEEEeCCeEEEeeHHHHh-cCCCccccchhhhcC--CCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCC
Q psy13137         57 DAENRVVLNVGGIRHETYKATLK-KIPATRLSRLTEALG--NYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTV  133 (164)
Q Consensus        57 ~~~~~I~LNVGG~~F~T~~sTL~-r~P~S~L~~l~~~~~--~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v  133 (164)
                      ..+..|+|||||+.|+|+.+||. +-|||||..||+...  ...++.|.|||||+|.+|++||||||+|+++   .-.++
T Consensus         6 ~~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~---~~s~i   82 (302)
T KOG1665|consen    6 NLSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIP---SLSDI   82 (302)
T ss_pred             ChhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCcee---ecCCc
Confidence            35688999999999999999997 679999999997432  2346899999999999999999999999999   78899


Q ss_pred             CHHHHHHHHHHHHHhhH
Q psy13137        134 CMASYTSELLKKKKKKK  150 (164)
Q Consensus       134 ~~~~f~eEl~y~~~~~~  150 (164)
                      ....+++|+.||++=-=
T Consensus        83 ~~lgvLeeArff~i~sL   99 (302)
T KOG1665|consen   83 DCLGVLEEARFFQILSL   99 (302)
T ss_pred             cHHHHHHHhhHHhhHhH
Confidence            99999999999998543

>KOG2716|consensus

Probab=99.74  E-value=2e-18  Score=144.91  Aligned_cols=86  Identities=26%  Similarity=0.167  Sum_probs=74.6

Q ss_pred             CCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcC-CCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCHH
Q psy13137         58 AENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALG-NYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMA  136 (164)
Q Consensus        58 ~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~-~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~  136 (164)
                      .++.|+|||||+.|.|+.+||++ -+++|..|++... ...++.|.|||||+|.+|+.||||||+|.+.   +|++--..
T Consensus         3 ~~~~vkLnvGG~~F~Tsk~TLtk-~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~---LPe~~kel   78 (230)
T KOG2716|consen    3 MSETVKLNVGGTIFKTSKSTLTK-FDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVD---LPESEKEL   78 (230)
T ss_pred             ccceEEEecCCeEEEeehhhhhh-hhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhccccc---CccchHHH
Confidence            45889999999999999999999 5789999987532 2345789999999999999999999999999   99987775


Q ss_pred             -HHHHHHHHHHH
Q psy13137        137 -SYTSELLKKKK  147 (164)
Q Consensus       137 -~f~eEl~y~~~  147 (164)
                       .++.|++||.-
T Consensus        79 ~El~~EA~fYlL   90 (230)
T KOG2716|consen   79 KELLREAEFYLL   90 (230)
T ss_pred             HHHHHHHHHhhH
Confidence             69999999863

>KOG2723|consensus

Probab=99.72  E-value=3.6e-18  Score=142.61  Aligned_cols=89  Identities=29%  Similarity=0.301  Sum_probs=79.6

Q ss_pred             CCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhh-cCCCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCH-
Q psy13137         58 AENRVVLNVGGIRHETYKATLKKIPATRLSRLTEA-LGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCM-  135 (164)
Q Consensus        58 ~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~-~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~-  135 (164)
                      -+++|.|||||+.|+|+..||.++|+|+|++|++. .....+..+.||||||+.+|++||+|||+-.+.   +|++... 
T Consensus         7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~---lpe~f~e~   83 (221)
T KOG2723|consen    7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALL---LPEDFAEV   83 (221)
T ss_pred             cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcccccc---cchhhhhH
Confidence            45899999999999999999999999999999974 233457889999999999999999999998788   8999885 


Q ss_pred             HHHHHHHHHHHHhh
Q psy13137        136 ASYTSELLKKKKKK  149 (164)
Q Consensus       136 ~~f~eEl~y~~~~~  149 (164)
                      ..+.+|++||+...
T Consensus        84 ~~L~rEA~f~~l~~   97 (221)
T KOG2723|consen   84 ERLVREAEFFQLEA   97 (221)
T ss_pred             HHHHHHHHHHcccc
Confidence            57999999999874

>KOG1545|consensus

Probab=99.71  E-value=8.6e-18  Score=149.52  Aligned_cols=89  Identities=35%  Similarity=0.543  Sum_probs=83.7

Q ss_pred             CCCCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccCC-CCCCCCCCCCCC
Q psy13137         56 MDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVF-RLPLGFKPWTVC  134 (164)
Q Consensus        56 ~~~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG-~L~~~~~P~~v~  134 (164)
                      ....++|+|||.|-+|+|..+||.++|+|+|+.-..+...+|+..+||||||+...|+.||.||++| +|.   +|.+|+
T Consensus        57 ~~~~ervvINisGlRFeTql~TL~qfP~TLLGDp~kR~rfFdplrNEyFFDRnRpSFdaILYyYQSGGRlr---RPvnVP  133 (507)
T KOG1545|consen   57 SCCCERVVINISGLRFETQLKTLAQFPNTLLGDPAKRMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLR---RPVNVP  133 (507)
T ss_pred             cccccEEEEEeccceehHHHHHHhhCchhhcCCHHHhcccccccchhhcccCCCCccceEEEEeecCceec---CCcccc
Confidence            3456999999999999999999999999999999888888999999999999999999999999975 788   999999


Q ss_pred             HHHHHHHHHHHHH
Q psy13137        135 MASYTSELLKKKK  147 (164)
Q Consensus       135 ~~~f~eEl~y~~~  147 (164)
                      .+.|.+|+.|||-
T Consensus       134 lDiF~eEirFyql  146 (507)
T KOG1545|consen  134 LDIFLEEIRFYQL  146 (507)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999984

>KOG3840|consensus

Probab=98.59  E-value=3.8e-08  Score=86.91  Aligned_cols=87  Identities=18%  Similarity=0.205  Sum_probs=75.0

Q ss_pred             CCCCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCC--CCCCCeEEEe--cCCCChHHHhccccCCCCCCCCCCC
Q psy13137         56 MDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNY--DPVLNEYFFD--RHPGVFAQVLNYYRVFRLPLGFKPW  131 (164)
Q Consensus        56 ~~~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~--~~~~~eyFID--RDp~~F~~ILnyLRtG~L~~~~~P~  131 (164)
                      .-+.++|.+-|.|++|.++...|+..|+|+++.|+...-++  -.+.|||-+.  -.-.+|+.||+||.+|.+.   ||+
T Consensus        92 pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iR---CP~  168 (438)
T KOG3840|consen   92 PGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMR---CPS  168 (438)
T ss_pred             CCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCcee---CCC
Confidence            34679999999999999999999999999999998653322  2488999774  4567899999999999999   999


Q ss_pred             CCCHHHHHHHHHHH
Q psy13137        132 TVCMASYTSELLKK  145 (164)
Q Consensus       132 ~v~~~~f~eEl~y~  145 (164)
                      +|++..+.|.++|-
T Consensus       169 ~vSvpELrEACDYL  182 (438)
T KOG3840|consen  169 SVSVSELREACDYL  182 (438)
T ss_pred             CCchHHHHhhcceE
Confidence            99999999998884

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=98.43  E-value=2.8e-07  Score=61.58  Aligned_cols=81  Identities=20%  Similarity=0.132  Sum_probs=61.3

Q ss_pred             EEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeE-EEecCCCChHHHhccccCCCCCCCCCCCCCCHHHHHH
Q psy13137         62 VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEY-FFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYTS  140 (164)
Q Consensus        62 I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~ey-FIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~e  140 (164)
                      |.|+|||..|.+.+..|...+ +++..++.... .......+ +.|.++..|..||+|+.+|.+.   +|.+ ....+.+
T Consensus         2 v~i~v~~~~~~~h~~iL~~~s-~~f~~~~~~~~-~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~---~~~~-~~~~l~~   75 (90)
T smart00225        2 VTLVVGGKKFKAHKAVLAACS-PYFKALFSGDF-KESKKSEIYLDDVSPEDFRALLEFLYTGKLD---LPEE-NVEELLE   75 (90)
T ss_pred             eEEEECCEEEehHHHHHhhcC-HHHHHHHcCCC-ccCCCCEEEecCCCHHHHHHHHHeecCceee---cCHH-HHHHHHH
Confidence            569999999999999998885 45556654321 11134455 4479999999999999999988   6666 6668999


Q ss_pred             HHHHHHHh
Q psy13137        141 ELLKKKKK  148 (164)
Q Consensus       141 El~y~~~~  148 (164)
                      .++||+-.
T Consensus        76 ~a~~~~~~   83 (90)
T smart00225       76 LADYLQIP   83 (90)
T ss_pred             HHHHHCcH
Confidence            99998753

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PHA03098 kelch-like protein; Provisional

Probab=93.73  E-value=0.07  Score=48.38  Aligned_cols=83  Identities=12%  Similarity=0.079  Sum_probs=59.4

Q ss_pred             CCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCHHH
Q psy13137         58 AENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMAS  137 (164)
Q Consensus        58 ~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~  137 (164)
                      .+-.|.+.|+|+.|...+..|....+ .|..|+...  ..  .+++-+.=++++|+.||+|+.+|++.   +..+- ...
T Consensus        10 ~Dv~l~~~~~~~~~~~Hk~vLaa~S~-yF~~mf~~~--~~--~~~i~l~~~~~~~~~~l~y~Ytg~~~---i~~~~-~~~   80 (534)
T PHA03098         10 CDESIIIVNGGGIIKVHKIILSSSSE-YFKKMFKNN--FK--ENEINLNIDYDSFNEVIKYIYTGKIN---ITSNN-VKD   80 (534)
T ss_pred             CCEEEEEEcCCEEEEeHHHHHHhhhH-HHHHHHhCC--CC--CceEEecCCHHHHHHHHHHhcCCceE---EcHHH-HHH
Confidence            34566777799999999999987643 455666532  12  45565533999999999999999988   55443 556


Q ss_pred             HHHHHHHHHHhh
Q psy13137        138 YTSELLKKKKKK  149 (164)
Q Consensus       138 f~eEl~y~~~~~  149 (164)
                      ++.-+++|+.-.
T Consensus        81 ll~~A~~l~~~~   92 (534)
T PHA03098         81 ILSIANYLIIDF   92 (534)
T ss_pred             HHHHHHHhCcHH
Confidence            777777777543

>PHA02790 Kelch-like protein; Provisional

Probab=87.86  E-value=0.57  Score=42.69  Aligned_cols=79  Identities=9%  Similarity=-0.000  Sum_probs=56.0

Q ss_pred             EEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE---ecCCCChHHHhccccCCCCCCCCCCCCCCHHHHH
Q psy13137         63 VLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF---DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYT  139 (164)
Q Consensus        63 ~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI---DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~  139 (164)
                      .+-|.|..|...+..|.... ..|..||...  +....+++.+   |=|++.++.||+|+.||+|.   +..+ .++.++
T Consensus        25 ~~~~~~~~~~~HR~VLAa~S-~YFraMF~~~--~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~---it~~-nV~~ll   97 (480)
T PHA02790         25 IIEAIGGNIIVNSTILKKLS-PYFRTHLRQK--YTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVY---IDSH-NVVNLL   97 (480)
T ss_pred             EEEEcCcEEeeehhhhhhcC-HHHHHHhcCC--ccccccceEEEecCcCHHHHHHHHHhheeeeEE---Eecc-cHHHHH
Confidence            35566778888888887764 3556666431  2222333432   78999999999999999998   6554 577888


Q ss_pred             HHHHHHHHh
Q psy13137        140 SELLKKKKK  148 (164)
Q Consensus       140 eEl~y~~~~  148 (164)
                      +.+.++|.-
T Consensus        98 ~aA~~Lqi~  106 (480)
T PHA02790         98 RASILTSVE  106 (480)
T ss_pred             HHHHHhChH
Confidence            888888864

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=87.50  E-value=0.32  Score=34.19  Aligned_cols=84  Identities=18%  Similarity=0.100  Sum_probs=55.2

Q ss_pred             CeEEEEeC-CeEEEeeHHHHhcCCCccccchhhhcCCCCCCCC--eEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCH
Q psy13137         60 NRVVLNVG-GIRHETYKATLKKIPATRLSRLTEALGNYDPVLN--EYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCM  135 (164)
Q Consensus        60 ~~I~LNVG-G~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~--eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~  135 (164)
                      .-+.|.|| |..|.+.+..|...- .+|..++....  ..+.+  ++-+ |=+++.|..|++|+.+|.+.   .+..-..
T Consensus        11 ~D~~i~v~d~~~~~vhk~iL~~~S-~~F~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~---~~~~~~~   84 (111)
T PF00651_consen   11 SDVTIRVGDGKTFYVHKNILAARS-PYFRNLFEGSK--FKESTVPEISLPDVSPEAFEAFLEYMYTGEIE---INSDENV   84 (111)
T ss_dssp             --EEEEETTTEEEEE-HHHHHHHB-HHHHHHHTTTT--STTSSEEEEEETTSCHHHHHHHHHHHHHSEEE---EE-TTTH
T ss_pred             CCEEEEECCCEEEeechhhhhccc-hhhhhcccccc--cccccccccccccccccccccccccccCCccc---CCHHHHH
Confidence            45889999 999999999997652 35666665431  11222  3433 36789999999999999987   5523345


Q ss_pred             HHHHHHHHHHHHhh
Q psy13137        136 ASYTSELLKKKKKK  149 (164)
Q Consensus       136 ~~f~eEl~y~~~~~  149 (164)
                      ..+++-+++|+...
T Consensus        85 ~~ll~lA~~~~~~~   98 (111)
T PF00651_consen   85 EELLELADKLQIPE   98 (111)
T ss_dssp             HHHHHHHHHTTBHH
T ss_pred             HHHHHHHHHhCcHH
Confidence            56777777766543

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA02713 hypothetical protein; Provisional

Probab=85.02  E-value=1.1  Score=41.75  Aligned_cols=81  Identities=9%  Similarity=0.016  Sum_probs=58.7

Q ss_pred             eEEEEeC-CeEEEeeHHHHhcCCCccccchhhhcCCCC--CCCCeEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCHH
Q psy13137         61 RVVLNVG-GIRHETYKATLKKIPATRLSRLTEALGNYD--PVLNEYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMA  136 (164)
Q Consensus        61 ~I~LNVG-G~~F~T~~sTL~r~P~S~L~~l~~~~~~~~--~~~~eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~  136 (164)
                      -|+|-|+ |+.|...+..|..... .|..||...  +.  ...+++-+ +=+++.|+.||+|+.+|.|.    ++  ...
T Consensus        27 DV~L~v~~~~~f~~Hr~vLaa~S~-YF~amF~~~--~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i~----~~--nv~   97 (557)
T PHA02713         27 DVIITIGDGEEIKAHKTILAAGSK-YFRTLFTTP--MIIRDLVTRVNLQMFDKDAVKNIVQYLYNRHIS----SM--NVI   97 (557)
T ss_pred             CEEEEeCCCCEEeehHHHHhhcCH-HHHHHhcCC--chhhccCceEEeccCCHHHHHHHHHHhcCCCCC----HH--HHH
Confidence            4778898 8999999999986643 456666431  12  12456655 58999999999999999855    33  466


Q ss_pred             HHHHHHHHHHHhhH
Q psy13137        137 SYTSELLKKKKKKK  150 (164)
Q Consensus       137 ~f~eEl~y~~~~~~  150 (164)
                      .++.-++++|...=
T Consensus        98 ~ll~aA~~lqi~~l  111 (557)
T PHA02713         98 DVLKCADYLLIDDL  111 (557)
T ss_pred             HHHHHHHHHCHHHH
Confidence            78888888887543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
3kvt_A	115	Tetramerization Domain From Akv3.1 (shaw-subfamily)		8e-32
1nn7_A	105	Crystal Structure Of The Tetramerization Domain Of		4e-10
1s1g_A	124	Crystal Structure Of Kv4.3 T1 Domain Length = 124		2e-09
2nz0_B	140	Crystal Structure Of Potassium Channel Kv4.3 In Com		4e-09
2r9r_B	514	Shaker Family Voltage Dependent Potassium Channel (		4e-09
3lnm_B	514	F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Chan		4e-09
2i2r_A	144	Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX Len		4e-09
2a79_B	499	Mammalian Shaker Kv1.2 Potassium Channel- Beta Subu		7e-09
3lut_B	499	A Structural Model For The Full-Length Shaker Potas		7e-09
1qdv_A	99	N-Terminal Domain, Voltage-Gated Potassium Channel		5e-08
1qdw_A	87	N-Terminal Domain, Voltage-Gated Potassium Channel		5e-08
1exb_E	103	Structure Of The Cytoplasmic Beta Subunit-T1 Assemb		6e-08
1a68_A	95	Crystal Structure Of The Tetramerization Domain Of		2e-07
1dsx_A	87	Kv1.2 T1 Domain, Residues 33-119, T46v Mutant Lengt		2e-07
1t1d_A	100	Crystal Structure Of The Tetramerization Domain Of		2e-07
1eod_A	100	Crystal Structure Of The N136d Mutant Of A Shaker T		2e-07
1eof_A	100	Crystal Structure Of The N136a Mutant Of A Shaker T		2e-07
1eoe_A	100	Crystal Structure Of The V135r Mutant Of A Shaker T		2e-07
3drx_A	202	X-Ray Crystal Structure Of Human Kctd5 Protein Crys		4e-04
3drz_A	107	X-Ray Crystal Structure Of The N-Terminal Btb Domai		4e-04

>pdb|3KVT|A Chain A, Tetramerization Domain From Akv3.1 (shaw-subfamily) Voltage-gated Potassium Channel Length = 115

Iteration: 1
 Score =  132 bits (332), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 64/87 (73%), Positives = 71/87 (81%), Gaps = 3/87 (3%)
Query: 56  MDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQV 115
           MDAENRV++NVGGIRHETYKATLKKIPATRLSRLTE + NYDPVLNEYFFDRHPGVFAQ+
Sbjct: 1   MDAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQI 60
Query: 116 LNYYRVFRLPLGFKPWTVCMASYTSEL 142
           +NYYR  +L     P  VC   +  EL
Sbjct: 61  INYYRSGKL---HYPTDVCGPLFEEEL 84

>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The Shal Voltage- Gated Potassium Channel Length = 105

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 62  VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV 121
           +VLNV G R +T++ TL++ P T L   +E    Y P   +YFFDR P +F  +LN+YR 
Sbjct: 2   IVLNVSGTRFQTWQDTLERYPDTLLGS-SERDFFYHPETQQYFFDRDPDIFRHILNFYRT 60
Query: 122 FRLPLGFKPWTVCMASYTSEL 142
            +L     P   C+++Y  EL
Sbjct: 61  GKLHY---PRHECISAYDEEL 78

>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain Length = 124

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 62  VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV 121
           +VLNV G R +T++ TL++ P T L   TE    ++    EYFFDR P VF  VLN+YR 
Sbjct: 15  IVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 73
Query: 122 FRLPLGFKPWTVCMASYTSEL 142
            +L     P   C+++Y  EL
Sbjct: 74  GKLHY---PRYECISAYDDEL 91

>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex With Its Regulatory Subunit Kchip1 (Casp Target) Length = 140

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 62  VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV 121
           +VLNV G R +T++ TL++ P T L   TE    ++    EYFFDR P VF  VLN+YR 
Sbjct: 37  IVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 95
Query: 122 FRLPLGFKPWTVCMASYTSEL 142
            +L     P   C+++Y  EL
Sbjct: 96  GKL---HYPRYECISAYDDEL 113

>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel (Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With Beta Subunit Length = 514

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 57  DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVL 116
           ++  RVV+N+ G+R ET   TL + P T L    + +  +DP+ NEYFFDR+   F  +L
Sbjct: 49  ESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAIL 108
Query: 117 NYYR 120
            YY+
Sbjct: 109 YYYQ 112

>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel Length = 514

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 57  DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVL 116
           ++  RVV+N+ G+R ET   TL + P T L    + +  +DP+ NEYFFDR+   F  +L
Sbjct: 49  ESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAIL 108
Query: 117 NYYR 120
            YY+
Sbjct: 109 YYYQ 112

>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX Length = 144

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 62  VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV 121
           +VLNV G R +T++ TL++ P T L   TE    ++    EYFFDR P VF  VLN+YR 
Sbjct: 43  IVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 101
Query: 122 FRLPLGFKPWTVCMASYTSEL 142
            +L     P   C+++Y  EL
Sbjct: 102 GKL---HYPRYECISAYDDEL 119

>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit Complex Length = 499

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 61  RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
           RVV+N+ G+R ET   TL + P T L    + +  +DP+ NEYFFDR+   F  +L YY+
Sbjct: 34  RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQ 93

>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium Channel Kv1.2 Length = 499

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 61  RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
           RVV+N+ G+R ET   TL + P T L    + +  +DP+ NEYFFDR+   F  +L YY+
Sbjct: 34  RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQ 93

>pdb|1QDV|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2 Residues 33-131 Length = 99

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 60  NRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYY 119
            RVV+N+ G+R ET   TL + P T L    + +  +DP+ NEYFFDR+   F  +L YY
Sbjct: 1   ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 120 R 120
           +
Sbjct: 61  Q 61

>pdb|1QDW|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2 Residues 33-119 Length = 87

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 60  NRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYY 119
            RVV+N+ G+R ET   TL + P T L    + +  +DP+ NEYFFDR+   F  +L YY
Sbjct: 1   ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 120 R 120
           +
Sbjct: 61  Q 61

>pdb|1EXB|E Chain E, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of Voltage-Dependent K Channels Length = 103

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 61  RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
           RVV+N+ G+R ET   TL + P T L    + +  +DP+ NEYFFDR+   F  +L YY+
Sbjct: 12  RVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQ 71

>pdb|1A68|A Chain A, Crystal Structure Of The Tetramerization Domain Of The Shaker Potassium Channel Length = 95

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 61  RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
           RVV+NV G+R ET   TL + P T L    +    YDP+ NEYFFDR+   F  +L +Y+
Sbjct: 3   RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 62

>pdb|1DSX|A Chain A, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant Length = 87

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 60  NRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYY 119
            RVV+N+ G+R E    TL + P T L    + +  +DP+ NEYFFDR+   F  +L YY
Sbjct: 1   ERVVINISGLRFEVQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 120 R 120
           +
Sbjct: 61  Q 61

>pdb|1T1D|A Chain A, Crystal Structure Of The Tetramerization Domain Of The Shaker Potassium Channel Length = 100

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 61  RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
           RVV+NV G+R ET   TL + P T L    +    YDP+ NEYFFDR+   F  +L +Y+
Sbjct: 2   RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61

>pdb|1EOD|A Chain A, Crystal Structure Of The N136d Mutant Of A Shaker T1 Domain Length = 100

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 61  RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
           RVV+NV G+R ET   TL + P T L    +    YDP+ NEYFFDR+   F  +L +Y+
Sbjct: 2   RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61

>pdb|1EOF|A Chain A, Crystal Structure Of The N136a Mutant Of A Shaker T1 Domain Length = 100

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 61  RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
           RVV+NV G+R ET   TL + P T L    +    YDP+ NEYFFDR+   F  +L +Y+
Sbjct: 2   RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61

>pdb|1EOE|A Chain A, Crystal Structure Of The V135r Mutant Of A Shaker T1 Domain Length = 100

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 61  RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
           RVV+NV G+R ET   TL + P T L    +    YDP+ NEYFFDR+   F  +L +Y+
Sbjct: 2   RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61

>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein Crystallized In High- Salt Buffer Length = 202

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 62  VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNE---YFFDRHPGVFAQVLNY 118
           V LNVGG    T + TL + P + L RL +A  + D   +E   Y  DR P  F  VLNY
Sbjct: 14  VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNY 73
Query: 119 YRVFRL 124
            R  +L
Sbjct: 74  LRHGKL 79

>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of Human Kctd5 Protein Length = 107

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 62  VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNE---YFFDRHPGVFAQVLNY 118
           V LNVGG    T + TL + P + L RL +A  + D   +E   Y  DR P  F  VLNY
Sbjct: 8   VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNY 67
Query: 119 YRVFRL 124
            R  +L
Sbjct: 68  LRHGKL 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	6e-32
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	2e-30
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	1e-29
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	9e-29
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	1e-28
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	2e-26
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	1e-24
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	9e-23

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Length = 115

 Score =  109 bits (275), Expect = 6e-32
 Identities = 64/87 (73%), Positives = 71/87 (81%), Gaps = 3/87 (3%)

Query: 56  MDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQV 115
           MDAENRV++NVGGIRHETYKATLKKIPATRLSRLTE + NYDPVLNEYFFDRHPGVFAQ+
Sbjct: 1   MDAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQI 60

Query: 116 LNYYRVFRLPLGFKPWTVCMASYTSEL 142
           +NYYR  +L     P  VC   +  EL
Sbjct: 61  INYYRSGKLHY---PTDVCGPLFEEEL 84

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Length = 140

 Score =  106 bits (267), Expect = 2e-30
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 57  DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVL 116
             +  +VLNV G R +T++ TL++ P T L    +    ++    EYFFDR P VF  VL
Sbjct: 32  RQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEF-FFNEDTKEYFFDRDPEVFRCVL 90

Query: 117 NYYRVFRLPLGFKPWTVCMASYTSEL 142
           N+YR  +L     P   C+++Y  EL
Sbjct: 91  NFYRTGKLHY---PRYECISAYDDEL 113

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Length = 124

 Score =  104 bits (260), Expect = 1e-29
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 57  DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVL 116
             +  +VLNV G R +T++ TL++ P T L    +    ++    EYFFDR P VF  VL
Sbjct: 10  RQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEF-FFNEDTKEYFFDRDPEVFRCVL 68

Query: 117 NYYRVFRLPLGFKPWTVCMASYTSEL 142
           N+YR  +L     P   C+++Y  EL
Sbjct: 69  NFYRTGKLHY---PRYECISAYDDEL 91

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Length = 105

 Score =  101 bits (253), Expect = 9e-29
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 4/81 (4%)

Query: 62  VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV 121
           +VLNV G R +T++ TL++ P T L         Y P   +YFFDR P +F  +LN+YR 
Sbjct: 2   IVLNVSGTRFQTWQDTLERYPDTLLGSSERD-FFYHPETQQYFFDRDPDIFRHILNFYRT 60

Query: 122 FRLPLGFKPWTVCMASYTSEL 142
            +L     P   C+++Y  EL
Sbjct: 61  GKLHY---PRHECISAYDEEL 78

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score =  108 bits (272), Expect = 1e-28
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 57  DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVL 116
           ++  RVV+N+ G+R ET   TL + P T L    + +  +DP+ NEYFFDR+   F  +L
Sbjct: 49  ESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAIL 108

Query: 117 NYYRV-FRLPLGFKPWTVCMASYTSEL 142
            YY+   RL    +P  V +  ++ E+
Sbjct: 109 YYYQSGGRL---RRPVNVPLDIFSEEI 132

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Length = 100

 Score = 95.2 bits (237), Expect = 2e-26
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 61  RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
           RVV+NV G+R ET   TL + P T L    +    YDP+ NEYFFDR+   F  +L +Y+
Sbjct: 2   RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61

Query: 121 VFRLPLGFKPWTVCMASYTSEL 142
                   +P  V +  ++ E+
Sbjct: 62  SGGRLR--RPVNVPLDVFSEEI 81

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Length = 107

 Score = 90.8 bits (226), Expect = 1e-24
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 57  DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVL---NEYFFDRHPGVFA 113
                V LNVGG    T + TL + P + L RL +A  + D        Y  DR P  F 
Sbjct: 3   SVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFG 62

Query: 114 QVLNYYRVFRLPL 126
            VLNY R  +L +
Sbjct: 63  PVLNYLRHGKLVI 75

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Length = 202

 Score = 88.9 bits (220), Expect = 9e-23
 Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 15/120 (12%)

Query: 57  DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNE---YFFDRHPGVFA 113
                V LNVGG    T + TL + P + L RL +A  + D   +E   Y  DR P  F 
Sbjct: 9   SVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFG 68

Query: 114 QVLNYYRVFRLPLGFKPWTVCMASYTSEL-------LKK--KKKKKKKKKKKKKKKDCHV 164
            VLNY R  +L +      +       E        L K  K K +++  K  +    HV
Sbjct: 69  PVLNYLRHGKLVI---NKDLAEEGVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHV 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	99.97
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	99.97
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	99.95
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	99.95
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	99.95
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	99.95
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	99.93
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.92
2vpk_A	116	Myoneurin; transcription regulation, transcription	96.82
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	96.77
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	96.6
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	96.06
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	96.05
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	96.02
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	96.01
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	95.86
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	95.84
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	95.83
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	95.76
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	95.64
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	95.63
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	95.57
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	95.46
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	94.99
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	94.87
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	94.47
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	93.17
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	92.34

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=99.97  E-value=8.2e-32  Score=202.66  Aligned_cols=91  Identities=70%  Similarity=1.056  Sum_probs=83.2

Q ss_pred             CCCCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCH
Q psy13137         56 MDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCM  135 (164)
Q Consensus        56 ~~~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~  135 (164)
                      |+++++|+|||||++|+|+++||+++|+|+|++|++....+++++++|||||||.+|++||||||+|+|+   +|+++|.
T Consensus         1 m~~~~~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiDRdp~~F~~ILnylR~G~l~---~p~~~~~   77 (115)
T 3kvt_A            1 MDAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLH---YPTDVCG   77 (115)
T ss_dssp             ---CCEEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSCBC---CCSSSCH
T ss_pred             CCCCCEEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEecChHHHHHHHHHhcCCCCC---CCCcccH
Confidence            5678999999999999999999999999999999987666778999999999999999999999999999   9999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy13137        136 ASYTSELLKKKKKK  149 (164)
Q Consensus       136 ~~f~eEl~y~~~~~  149 (164)
                      ..|++|++||.+--
T Consensus        78 ~~~~~Ea~fy~i~~   91 (115)
T 3kvt_A           78 PLFEEELEFWGLDS   91 (115)
T ss_dssp             HHHHHHHHHHTCCG
T ss_pred             HHHHHHHHHhCCCh
Confidence            99999999998643

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=99.97  E-value=2.8e-31  Score=195.57  Aligned_cols=86  Identities=37%  Similarity=0.588  Sum_probs=81.4

Q ss_pred             CeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccC-CCCCCCCCCCCCCHHHH
Q psy13137         60 NRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV-FRLPLGFKPWTVCMASY  138 (164)
Q Consensus        60 ~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRt-G~L~~~~~P~~v~~~~f  138 (164)
                      ++|+|||||++|+|+++||+++|+|+|++|++.+..+++++++|||||||.+|++||||||+ |+|+   +|+++|...|
T Consensus         1 ~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiDRdp~~F~~ILnflR~~G~l~---~p~~~~~~~~   77 (100)
T 1t1d_A            1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLR---RPVNVPLDVF   77 (100)
T ss_dssp             CEEEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEECSCSTTHHHHHHHHHTTSCCC---CCTTSCHHHH
T ss_pred             CEEEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEEcCChHHHHHHHHHHhcCCccc---CCCCCCHHHH
Confidence            47999999999999999999999999999998777788899999999999999999999999 9999   9999999999


Q ss_pred             HHHHHHHHHh
Q psy13137        139 TSELLKKKKK  148 (164)
Q Consensus       139 ~eEl~y~~~~  148 (164)
                      .+|++||.+-
T Consensus        78 ~~Ea~fy~i~   87 (100)
T 1t1d_A           78 SEEIKFYELG   87 (100)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHcCCC
Confidence            9999999864

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=99.95  E-value=6.5e-29  Score=183.74  Aligned_cols=84  Identities=38%  Similarity=0.637  Sum_probs=76.6

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCHHHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYTS  140 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~e  140 (164)
                      +|+|||||++|+|+++||+++|+|+|++. .....+++++++|||||||.+|++||||||+|+|+   +|+++|...|.+
T Consensus         1 ~V~LNVGG~~f~t~~~TL~~~p~s~L~~~-~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~g~l~---~p~~~~~~~l~~   76 (105)
T 1nn7_A            1 LIVLNVSGTRFQTWQDTLERYPDTLLGSS-ERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLH---YPRHECISAYDE   76 (105)
T ss_dssp             CEEEEETTEEEEECHHHHHTSCSSSTTSG-GGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBC---CCTTSCHHHHHH
T ss_pred             CEEEEECCEEEEEeHHHHhcCCCcccccc-CCcccccCCCCcEEEeCCcHHHHHHHHHHhcCCCC---CCCCcCHHHHHH
Confidence            58999999999999999999999999994 23334567899999999999999999999999999   999999999999


Q ss_pred             HHHHHHHh
Q psy13137        141 ELLKKKKK  148 (164)
Q Consensus       141 El~y~~~~  148 (164)
                      |++||.+-
T Consensus        77 Ea~fy~i~   84 (105)
T 1nn7_A           77 ELAFFGLI   84 (105)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHcCCC
Confidence            99999864

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=99.95  E-value=7.1e-29  Score=188.91  Aligned_cols=89  Identities=38%  Similarity=0.589  Sum_probs=79.9

Q ss_pred             CCCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCHH
Q psy13137         57 DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMA  136 (164)
Q Consensus        57 ~~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~  136 (164)
                      ..+++|+|||||++|+|+++||+++|+|+|++ ......+++++++|||||||.+|++||||||+|+|+   +|+++|..
T Consensus        10 ~~~~~V~LNVGG~~F~t~~~TL~~~p~S~L~~-~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~l~---~p~~~~~~   85 (124)
T 1s1g_A           10 RQDELIVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLH---YPRYECIS   85 (124)
T ss_dssp             --CCEEEEEETTEEEEEEHHHHTTSTTSSTTS-SGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSCBC---CCTTSCHH
T ss_pred             CCCCEEEEEeCCEEEEEeHHHHhcCCCceecc-cCCcccccCCCCcEEEcCChHHHHHHHHHHhcCCCC---CCCCcCHH
Confidence            46799999999999999999999999999998 333345778999999999999999999999999999   99999999


Q ss_pred             HHHHHHHHHHHhh
Q psy13137        137 SYTSELLKKKKKK  149 (164)
Q Consensus       137 ~f~eEl~y~~~~~  149 (164)
                      .|++|++||.+-.
T Consensus        86 ~l~~Ea~fy~i~~   98 (124)
T 1s1g_A           86 AYDDELAFYGILP   98 (124)
T ss_dssp             HHHHHHHHTTCCG
T ss_pred             HHHHHHHHcCCCh
Confidence            9999999998753

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=99.95  E-value=1.3e-28  Score=191.08  Aligned_cols=91  Identities=37%  Similarity=0.563  Sum_probs=82.1

Q ss_pred             CCCCCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCC
Q psy13137         55 MMDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVC  134 (164)
Q Consensus        55 ~~~~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~  134 (164)
                      ....+++|+|||||++|+|+++||+++|+|+|+. ......+++++++|||||||.+|++||||||+|+|+   +|+++|
T Consensus        30 ~~~~~~~V~LNVGG~~F~T~~~TL~~~P~S~L~~-~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~l~---~p~~~~  105 (140)
T 2nz0_B           30 NKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLH---YPRYEC  105 (140)
T ss_dssp             CTTCCCEEEEEETTEEEEEEHHHHHTCTTSTTTS-GGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSSBC---CCTTSC
T ss_pred             cCCCCCEEEEEECCEEEEeeHHHHhcCCCeeecc-cCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCCcC---CCCCcC
Confidence            3457899999999999999999999999999998 333345678999999999999999999999999999   999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy13137        135 MASYTSELLKKKKKK  149 (164)
Q Consensus       135 ~~~f~eEl~y~~~~~  149 (164)
                      ...|++|++||.+-.
T Consensus       106 ~~~l~eEa~fy~i~~  120 (140)
T 2nz0_B          106 ISAYDDELAFYGILP  120 (140)
T ss_dssp             HHHHHHHHHHHTCCG
T ss_pred             HHHHHHHHHHcCCCh
Confidence            999999999998754

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=99.95  E-value=7.5e-29  Score=183.03  Aligned_cols=89  Identities=29%  Similarity=0.297  Sum_probs=79.3

Q ss_pred             CCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCC---CCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCC
Q psy13137         58 AENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNY---DPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVC  134 (164)
Q Consensus        58 ~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~---~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~  134 (164)
                      .+++|+|||||++|+|+++||+++|+|+|++|++....+   .+++++|||||||.+|++||||||+|+|+   +|+++|
T Consensus         4 ~~~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~---~p~~~~   80 (107)
T 3drz_A            4 VSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLV---INKDLA   80 (107)
T ss_dssp             -CCEEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCC---CCTTSC
T ss_pred             CCCEEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeC---CCCCCC
Confidence            568999999999999999999999999999998642111   23789999999999999999999999999   999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy13137        135 MASYTSELLKKKKKK  149 (164)
Q Consensus       135 ~~~f~eEl~y~~~~~  149 (164)
                      ...|++|++||+...
T Consensus        81 ~~~l~~Ea~fy~l~~   95 (107)
T 3drz_A           81 EEGVLEEAEFYNITS   95 (107)
T ss_dssp             HHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHCCCHH
Confidence            999999999998754

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=99.93  E-value=1.8e-26  Score=188.94  Aligned_cols=89  Identities=29%  Similarity=0.299  Sum_probs=80.0

Q ss_pred             CCCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCC---CCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCC
Q psy13137         57 DAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNY---DPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTV  133 (164)
Q Consensus        57 ~~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~---~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v  133 (164)
                      ..+++|+|||||++|+|+++||.++|+|+|++|++....+   .+++++|||||||.+|++||||||+|+|+   +|+++
T Consensus         9 ~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~L~---lP~~~   85 (202)
T 3drx_A            9 SVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLV---INKDL   85 (202)
T ss_dssp             CCCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHHHSCCC---CCTTS
T ss_pred             CCCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhcCCccC---CCCCC
Confidence            4679999999999999999999999999999998643222   23789999999999999999999999999   99999


Q ss_pred             CHHHHHHHHHHHHHh
Q psy13137        134 CMASYTSELLKKKKK  148 (164)
Q Consensus       134 ~~~~f~eEl~y~~~~  148 (164)
                      |...|++|++||.+.
T Consensus        86 ~~~~l~eEA~FygL~  100 (202)
T 3drx_A           86 AEEGVLEEAEFYNIT  100 (202)
T ss_dssp             CHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHCCcH
Confidence            999999999999864

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.92  E-value=1.1e-25  Score=203.48  Aligned_cols=90  Identities=34%  Similarity=0.584  Sum_probs=83.5

Q ss_pred             CCCCCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccC-CCCCCCCCCCCCC
Q psy13137         56 MDAENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV-FRLPLGFKPWTVC  134 (164)
Q Consensus        56 ~~~~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRt-G~L~~~~~P~~v~  134 (164)
                      ...+++|+|||||++|+|+++||.++|+|+|+++++.+.+++++++||||||||.+|++||||||+ |+|+   +|+++|
T Consensus        48 ~~~~~~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~DR~~~~F~~IL~~~r~~g~l~---~p~~~~  124 (514)
T 2r9r_B           48 HESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLR---RPVNVP  124 (514)
T ss_dssp             ---CCEEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEECSCHHHHHHHHHHHHHTSCCC---CCTTSC
T ss_pred             CCCCCEEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEEcCChHHHHHHHHHHhcCCccc---cCCccc
Confidence            345789999999999999999999999999999998777888999999999999999999999999 9999   999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy13137        135 MASYTSELLKKKKK  148 (164)
Q Consensus       135 ~~~f~eEl~y~~~~  148 (164)
                      ...|.+|++||+.-
T Consensus       125 ~~~~~~E~~f~~i~  138 (514)
T 2r9r_B          125 LDIFSEEIRFYELG  138 (514)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999999999864

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=96.82  E-value=0.00085  Score=47.68  Aligned_cols=79  Identities=11%  Similarity=0.120  Sum_probs=60.0

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEe---cCCCChHHHhccccCCCCCCCCCCCCCCHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFD---RHPGVFAQVLNYYRVFRLPLGFKPWTVCMAS  137 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFID---RDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~  137 (164)
                      =|.|.|||+.|...+..|.... .+|..|+...     ..+++.|+   -+|+.|..+|+|+.+|.+.   ++.+ ....
T Consensus        24 Dv~l~v~~~~~~aHk~vLaa~S-~yF~~~f~~~-----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~---~~~~-~v~~   93 (116)
T 2vpk_A           24 DCTIVIGEFQFKAHRNVLASFS-EYFGAIYRST-----SENNVFLDQSQVKADGFQKLLEFIYTGTLN---LDSW-NVKE   93 (116)
T ss_dssp             CEEEEETTEEEEECHHHHHHHC-HHHHHHHTTC-----CCSCEECCTTTCCHHHHHHHHHHHHHSCCC---CCTT-THHH
T ss_pred             cEEEEECCEEEeccHHHHhhcC-HHHHHHHcCC-----CCCeEEeecCCCCHHHHHHHHHHHcCCCcc---cCHH-HHHH
Confidence            4788999999999999997553 3566666532     35567665   6899999999999999988   5543 5567


Q ss_pred             HHHHHHHHHHhh
Q psy13137        138 YTSELLKKKKKK  149 (164)
Q Consensus       138 f~eEl~y~~~~~  149 (164)
                      ++.-+++|+...
T Consensus        94 ll~~A~~~~i~~  105 (116)
T 2vpk_A           94 IHQAADYLKVEE  105 (116)
T ss_dssp             HHHHHHHTTCHH
T ss_pred             HHHHHHHhCCHH
Confidence            888888887643

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=96.77  E-value=0.001  Score=47.94  Aligned_cols=83  Identities=13%  Similarity=0.099  Sum_probs=61.8

Q ss_pred             CeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE--ecCCCChHHHhccccCCCCCCCCCCCCCCHHH
Q psy13137         60 NRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF--DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMAS  137 (164)
Q Consensus        60 ~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI--DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~  137 (164)
                      .-|+|.|||+.|...+..|.... .+|..|+...  ......++-+  |-+|+.|..+|+|+.+|.+.   ++.+ ....
T Consensus        30 ~Dv~l~v~~~~~~aHk~iLaa~S-~~F~~~f~~~--~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~---~~~~-~~~~  102 (127)
T 1r29_A           30 TDVVIVVSREQFRAHKTVLMACS-GLFYSIFTDQ--LKRNLSVINLDPEINPEGFNILLDFMYTSRLN---LREG-NIMA  102 (127)
T ss_dssp             CCEEEEETTEEEEECHHHHHHHC-HHHHHHHTST--TTTTCSEEECCTTSCHHHHHHHHHHHHHSCCC---CCTT-THHH
T ss_pred             CCEEEEECCEEEehHHHHHHHhC-HHHHHHhcCC--ccCCCCEEEeCCCCCHHHHHHHHHHHcCCCcC---cCHH-HHHH
Confidence            34788999999999999997553 3566666532  1225677888  67899999999999999988   5543 4557


Q ss_pred             HHHHHHHHHHhh
Q psy13137        138 YTSELLKKKKKK  149 (164)
Q Consensus       138 f~eEl~y~~~~~  149 (164)
                      ++.-+++|+...
T Consensus       103 ll~~A~~~~i~~  114 (127)
T 1r29_A          103 VMATAMYLQMEH  114 (127)
T ss_dssp             HHHHHHHTTCHH
T ss_pred             HHHHHHHhCCHH
Confidence            888888887543

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=96.60  E-value=0.0008  Score=48.90  Aligned_cols=78  Identities=15%  Similarity=0.044  Sum_probs=61.0

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE--ecCCCChHHHhccccCCCCCCCCCCCCCCHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF--DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASY  138 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI--DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f  138 (164)
                      -|.|.|||+.|...+..|.... ..|..|+...     ...++.+  |-+|+.|..+|+|+.+|++.   ++.+ ....+
T Consensus        35 Dv~l~v~~~~~~~Hk~vLaa~S-~~F~~~f~~~-----~~~~i~l~~~~~~~~f~~ll~~iYtg~~~---i~~~-~~~~l  104 (129)
T 3ga1_A           35 DVSVVVKGHAFKAHRAVLAASS-SYFRDLFNNS-----RSAVVELPAAVQPQSFQQILSFCYTGRLS---MNVG-DQDLL  104 (129)
T ss_dssp             CEEEEETTEEEEECHHHHHHHB-HHHHHHHHHC-----CCSEEECCTTCCHHHHHHHHHHHHHSEEE---CCTT-THHHH
T ss_pred             ceEEEECCEEEEehHHHHHHcC-HHHHHHHcCC-----CCCEEEECCCCCHHHHHHHHHHHhCCccc---cCHH-HHHHH
Confidence            3778899999999999998653 3566676542     5677888  57899999999999999988   5544 45678


Q ss_pred             HHHHHHHHHh
Q psy13137        139 TSELLKKKKK  148 (164)
Q Consensus       139 ~eEl~y~~~~  148 (164)
                      +.-+++|+..
T Consensus       105 l~~A~~~~i~  114 (129)
T 3ga1_A          105 MYTAGFLQIQ  114 (129)
T ss_dssp             HHHHHHTTBT
T ss_pred             HHHHHHhCCH
Confidence            8888888753

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=96.06  E-value=0.0035  Score=44.96  Aligned_cols=80  Identities=10%  Similarity=-0.071  Sum_probs=59.0

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEe--cCCCChHHHhccccCCCCCCCCCCCCCCHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFD--RHPGVFAQVLNYYRVFRLPLGFKPWTVCMASY  138 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFID--RDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f  138 (164)
                      =|.|.|||+.|...+..|.... ..|..|+...  . .+..++.+.  -+++.|+.+|+|+.+|++.   ++.+ ....+
T Consensus        34 Dv~l~v~~~~f~aHk~vLaa~S-~yF~~~f~~~--~-~e~~~i~l~~~~~~~~f~~~l~~iYtg~~~---~~~~-~v~~l  105 (125)
T 3ohu_A           34 DVTLIVERKEFRAHRAVLAACS-EYFWQALVGQ--T-KNDLVVSLPEEVTARGFGPLLQFAYTAKLL---LSRE-NIREV  105 (125)
T ss_dssp             CEEEEETTEEEEECHHHHHHHB-HHHHHHHTTC--C-CSSCEEECCTTCCHHHHHHHHHHHTTSEEE---ECTT-THHHH
T ss_pred             ceEEEECCEEEechHHHHHHcC-HHHHHHhcCC--C-CCCcEEEeCCCCCHHHHHHHHHhHcCCceE---ECHH-HHHHH
Confidence            3778899999999999997653 3556666432  1 235667663  5899999999999999988   5543 45678


Q ss_pred             HHHHHHHHHh
Q psy13137        139 TSELLKKKKK  148 (164)
Q Consensus       139 ~eEl~y~~~~  148 (164)
                      +.-+++|+..
T Consensus       106 l~~A~~l~i~  115 (125)
T 3ohu_A          106 IRCAEFLRMH  115 (125)
T ss_dssp             HHHHHHHTBS
T ss_pred             HHHHHHhCCH
Confidence            8888888653

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=96.05  E-value=0.0048  Score=44.19  Aligned_cols=79  Identities=11%  Similarity=0.078  Sum_probs=58.9

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCHHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYT  139 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~  139 (164)
                      =|.|.|||+.|...+..|.... ..|..|+...     ..+++-+ |-+|+.|..+|+|+.+|++.   ++.+ ....++
T Consensus        26 Dv~l~v~~~~f~aHk~vLaa~S-~yF~~~f~~~-----~~~~i~l~~~~~~~f~~ll~~iYtg~~~---~~~~-~v~~ll   95 (119)
T 3b84_A           26 DATLDVGGLVFKAHWSVLACCS-HFFQSLYGDG-----SGGSVVLPAGFAEIFGLLLDFFYTGHLA---LTSG-NRDQVL   95 (119)
T ss_dssp             CEEEEETTEEEEECHHHHHHHC-HHHHHHHTTT-----TCCCEEECGGGHHHHHHHHHHHHHSCCC---CCTT-THHHHH
T ss_pred             ceEEEECCEEEEeeHHHHhhcC-HHHHHHHCCC-----CCCeEEeCCCCHHHHHHHHHHHcCCCCc---cCHH-HHHHHH
Confidence            3778899999999999997653 3456666532     1456666 46789999999999999988   5543 356788


Q ss_pred             HHHHHHHHhh
Q psy13137        140 SELLKKKKKK  149 (164)
Q Consensus       140 eEl~y~~~~~  149 (164)
                      .-+++|+...
T Consensus        96 ~~A~~~~i~~  105 (119)
T 3b84_A           96 LAARELRVPE  105 (119)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHHHhCcHH
Confidence            8888887643

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=96.02  E-value=0.0037  Score=45.94  Aligned_cols=79  Identities=11%  Similarity=0.098  Sum_probs=57.9

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCHHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYT  139 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~  139 (164)
                      -|+|.|||+.|...+..|...- .+|..|+...     ..+++-+ |-+++.|..+|+|+.+|++.   ++.+ ....++
T Consensus        27 Dv~l~v~~~~f~aHk~vLaa~S-~yF~~mf~~~-----~~~~i~l~~~~~~~f~~lL~fiYtg~~~---i~~~-~v~~ll   96 (135)
T 2yy9_A           27 DATLDVGGLVFKAHWSVLACCS-HFFQRIYGDG-----TGGSVVLPAGFAEIFGLLLDFFYTGHLA---LTSG-NRDQVL   96 (135)
T ss_dssp             CEEEEETTEEEEECHHHHHHHC-HHHHHTCC---------CCEEECGGGHHHHHHHHHHHHHSCCC---CCTT-THHHHH
T ss_pred             ceEEEECCEEEehHHHHHHHhC-HHHHHHHcCC-----CCCeEEeCCCCHHHHHHHHHHHhCCCCC---CCHH-HHHHHH
Confidence            4778899999999999987653 3455565431     1456666 46789999999999999988   5543 456788


Q ss_pred             HHHHHHHHhh
Q psy13137        140 SELLKKKKKK  149 (164)
Q Consensus       140 eEl~y~~~~~  149 (164)
                      .-+++|+...
T Consensus        97 ~~A~~l~i~~  106 (135)
T 2yy9_A           97 LAAKELRVPE  106 (135)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHHHhCcHH
Confidence            8888887654

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=96.01  E-value=0.005  Score=45.89  Aligned_cols=83  Identities=10%  Similarity=-0.072  Sum_probs=59.7

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCC-CCCCCCeEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGN-YDPVLNEYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASY  138 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~-~~~~~~eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f  138 (164)
                      -|.|.|||+.|...+..|.... .+|..|+..... ......++-+ |-+|+.|..+|+|+.+|.+.   ++.+ ....+
T Consensus        49 Dv~l~v~~~~f~aHk~vLaa~S-~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~---i~~~-~v~~l  123 (144)
T 2ppi_A           49 DAHLVLDGEEIPVQKNILAAAS-PYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIR---LNED-TIQDV  123 (144)
T ss_dssp             CEEEEETTEEEEECHHHHHHHC-HHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCC---CCTT-THHHH
T ss_pred             ceEEEECCEEEehHHHHHHHcC-HHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCC---CCHH-HHHHH
Confidence            4788999999999999997552 356667653211 1124556666 46899999999999999988   5543 45678


Q ss_pred             HHHHHHHHHh
Q psy13137        139 TSELLKKKKK  148 (164)
Q Consensus       139 ~eEl~y~~~~  148 (164)
                      +.-+++|+..
T Consensus       124 l~~A~~l~i~  133 (144)
T 2ppi_A          124 VQAADLLLLT  133 (144)
T ss_dssp             HHHHHHTTCH
T ss_pred             HHHHHHhCcH
Confidence            8888888754

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=95.86  E-value=0.0054  Score=44.00  Aligned_cols=78  Identities=15%  Similarity=0.043  Sum_probs=56.3

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCHHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYT  139 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~  139 (164)
                      -|.|.|||+.|...+..|.... ..|..++..      ...++-+ |=+|+.|..+|+|+.+|++..  ++. -....++
T Consensus        33 Dv~l~v~~~~f~aHk~vLaa~S-~~F~~~f~~------~~~~i~l~~~~~~~f~~~l~~~Ytg~~~~--~~~-~~~~~ll  102 (116)
T 3fkc_A           33 DVTVIVEDRKFRAHKNILSASS-TYFHQLFSV------AGQVVELSFIRAEIFAEILNYIYSSKIVR--VRS-DLLDELI  102 (116)
T ss_dssp             CEEEEETTEEEEECHHHHHHHC-HHHHHHTTS------CCSEEEECSSCHHHHHHHHHHHTTSCCCS--CCH-HHHHHHH
T ss_pred             eEEEEECCEEEehhHHHHHHcC-HHHHHHHcC------CCCEEEeCCCCHHHHHHHHHhhcCCCcCC--CCH-HHHHHHH
Confidence            3678899999999999997653 255666643      2467777 578999999999999999831  332 2344677


Q ss_pred             HHHHHHHHh
Q psy13137        140 SELLKKKKK  148 (164)
Q Consensus       140 eEl~y~~~~  148 (164)
                      .-+++|+..
T Consensus       103 ~~A~~l~i~  111 (116)
T 3fkc_A          103 KSGQLLGVK  111 (116)
T ss_dssp             HHHHHHTCH
T ss_pred             HHHHHhCcc
Confidence            788887654

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=95.84  E-value=0.0027  Score=45.53  Aligned_cols=78  Identities=14%  Similarity=0.110  Sum_probs=56.9

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEe-cCCCChHHHhccccCCCCCCCCCCCCCCHHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFD-RHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYT  139 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFID-RDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~  139 (164)
                      -|+|.|||+.|...+..|.... .+|..|+...      ...+-++ =+++.|..+|+|+.+|++.   ++.+ ....++
T Consensus        29 Dv~l~v~~~~~~aHk~vLaa~S-~yF~~~f~~~------~~~i~l~~~~~~~f~~ll~~~Ytg~~~---i~~~-~~~~ll   97 (119)
T 2q81_A           29 DCTFVVDGVHFKAHKAVLAACS-EYFKMLFVDQ------KDVVHLDISNAAGLGQVLEFMYTAKLS---LSPE-NVDDVL   97 (119)
T ss_dssp             CEEEEETTEEEEECHHHHHHHC-HHHHHHHHHC------CSGGGGGGCCHHHHHHHHHHHHHSCCC---CCTT-THHHHH
T ss_pred             ceEEEECCEEEehhHHHHHHcC-HHHHHHHcCC------CCEEEeCCCCHHHHHHHHHHHcCCCCc---cCHH-HHHHHH
Confidence            4778899999999999997653 3566666542      2233333 2788999999999999988   6654 456788


Q ss_pred             HHHHHHHHhh
Q psy13137        140 SELLKKKKKK  149 (164)
Q Consensus       140 eEl~y~~~~~  149 (164)
                      .-+++|+...
T Consensus        98 ~~A~~l~i~~  107 (119)
T 2q81_A           98 AVATFLQMQD  107 (119)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHHHhCCHH
Confidence            8888887543

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=95.83  E-value=0.0077  Score=41.85  Aligned_cols=81  Identities=16%  Similarity=0.034  Sum_probs=57.2

Q ss_pred             eEEEEeCC----eEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCH
Q psy13137         61 RVVLNVGG----IRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCM  135 (164)
Q Consensus        61 ~I~LNVGG----~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~  135 (164)
                      =|.|.|||    +.|...+..|.... ..|..|+...  +.....++-+ |-+|+.|..+|+|+.+|.+.   ++.+ ..
T Consensus        10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S-~~F~~~f~~~--~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~~---~~~~-~~   82 (109)
T 2vkp_A           10 DVHFVVGPPGATRTVPAHKYVLAVGS-SVFYAMFYGD--LAEVKSEIHIPDVEPAAFLILLKYMYSDEID---LEAD-TV   82 (109)
T ss_dssp             CEEEEESSTTSCEEEEECHHHHHHHC-HHHHHHHC--------CCEEEETTSCHHHHHHHHHHHHHCCCC---CCTT-TH
T ss_pred             cEEEEECCCCCcEEEEeeHHHHHHcC-HHHHHHhcCC--cccCCCeEEeCCCCHHHHHHHHHHHcCCCcc---CCHH-HH
Confidence            47888998    99999999997543 2566666432  1212267777 57999999999999999988   5553 34


Q ss_pred             HHHHHHHHHHHHh
Q psy13137        136 ASYTSELLKKKKK  148 (164)
Q Consensus       136 ~~f~eEl~y~~~~  148 (164)
                      ..++.-+++|+..
T Consensus        83 ~~ll~~A~~~~~~   95 (109)
T 2vkp_A           83 LATLYAAKKYIVP   95 (109)
T ss_dssp             HHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhCcH
Confidence            5677777777654

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=95.76  E-value=0.0074  Score=44.24  Aligned_cols=81  Identities=9%  Similarity=-0.010  Sum_probs=59.1

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE--ecCCCChHHHhccccCCCCCCCCCCCCCCHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF--DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASY  138 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI--DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f  138 (164)
                      -|.|.|||+.|...+..|.... .+|..|+...  . .+..++-+  |-+++.|..+|+|+.+|++.   ++.+ ....+
T Consensus        38 Dv~l~v~~~~f~aHk~vLaa~S-~yF~~~f~~~--~-~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~---i~~~-~v~~l  109 (138)
T 2z8h_A           38 DVTVLVEGQRFRAHRSVLAACS-SYFHSRIVGQ--T-DAELTVTLPEEVTVKGFEPLIQFAYTAKLI---LSKD-NVDEV  109 (138)
T ss_dssp             CEEEEETTEEEEECHHHHHHHC-HHHHHHHTTC--C-CTTEEEECCTTSCHHHHHHHHHHHHHSCCC---CCTT-THHHH
T ss_pred             CeEEEECCEEEechHHHHHHcC-HHHHHHHhcC--C-CCCceEEeCCCCCHHHHHHHHHHhcCCCcc---cCHH-HHHHH
Confidence            4778999999999999997553 3556666432  1 13345666  46789999999999999988   5543 45678


Q ss_pred             HHHHHHHHHhh
Q psy13137        139 TSELLKKKKKK  149 (164)
Q Consensus       139 ~eEl~y~~~~~  149 (164)
                      +.-+++|+...
T Consensus       110 l~~A~~~~i~~  120 (138)
T 2z8h_A          110 CRCVEFLSVHN  120 (138)
T ss_dssp             HHHHHHHTCGG
T ss_pred             HHHHHHhCCHH
Confidence            88888887653

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=95.64  E-value=0.0085  Score=42.86  Aligned_cols=78  Identities=15%  Similarity=0.089  Sum_probs=57.9

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCHHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYT  139 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~  139 (164)
                      -|.|.|||+.|...+..|.... ..|..|+..      +..++-+ |-+|+.|..+|+|+.+|++.   ++.+ ....++
T Consensus        30 Dv~l~v~~~~f~aHk~vLaa~S-~yF~~~f~~------~~~~i~l~~~~~~~f~~ll~~~Ytg~~~---~~~~-~~~~ll   98 (121)
T 1buo_A           30 DVVIMVDSQEFHAHRTVLACTS-KMFEILFHR------NSQHYTLDFLSPKTFQQILEYAYTATLQ---AKAE-DLDDLL   98 (121)
T ss_dssp             CEEEEESSCEEEECHHHHHHHC-HHHHHHTTS------CCSEEEECSSCHHHHHHHHHHHHHSCCC---CCGG-GHHHHH
T ss_pred             CEEEEECCEEEehhHHHHhhcC-HHHHHHHcC------CCcEEEeCCCCHHHHHHHHHhhcCCCcC---CCHH-HHHHHH
Confidence            4778899999999999986542 355666643      3456666 36899999999999999988   5543 345777


Q ss_pred             HHHHHHHHhh
Q psy13137        140 SELLKKKKKK  149 (164)
Q Consensus       140 eEl~y~~~~~  149 (164)
                      .-+++|+...
T Consensus        99 ~~A~~~~i~~  108 (121)
T 1buo_A           99 YAAEILEIEY  108 (121)
T ss_dssp             HHHHHHTCHH
T ss_pred             HHHHHHCCHH
Confidence            8888886543

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=95.63  E-value=0.0068  Score=45.17  Aligned_cols=82  Identities=18%  Similarity=0.129  Sum_probs=59.2

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCHHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYT  139 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~  139 (164)
                      -|.|.|||+.|...+..|.... .+|..|+... .......++-+ |-+|+.|..+|+|+.+|.+.   ++.+ ....++
T Consensus        36 Dv~l~v~~~~~~~Hk~iL~~~S-~~F~~~f~~~-~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~---~~~~-~~~~ll  109 (172)
T 3htm_A           36 DCCLCVAGQEFQAHKAILAARS-PVFSAMFEHE-MEESKKNRVEINDVEPEVFKEMMCFIYTGKAP---NLDK-MADDLL  109 (172)
T ss_dssp             CEEEEETTEEEEECHHHHHHHC-HHHHHHHHSC-CCGGGTTEEEECSSCHHHHHHHHHHHHHSCCT---TGGG-THHHHH
T ss_pred             ceEEEECCEEEEeeHHHHHHcC-HHHHHHHccC-ccccCCCeEEecCCCHHHHHHHHHHHhCCCCC---CcHH-HHHHHH
Confidence            4788999999999999997653 3566666532 11234467777 58999999999999999988   5543 334667


Q ss_pred             HHHHHHHHh
Q psy13137        140 SELLKKKKK  148 (164)
Q Consensus       140 eEl~y~~~~  148 (164)
                      .-+++|+..
T Consensus       110 ~~A~~~~~~  118 (172)
T 3htm_A          110 AAADKYALE  118 (172)
T ss_dssp             HHHHHTTCH
T ss_pred             HHHHHhCcH
Confidence            777777654

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=95.57  E-value=0.0048  Score=43.85  Aligned_cols=83  Identities=14%  Similarity=0.081  Sum_probs=58.0

Q ss_pred             CeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEe-cCCCChHHHhccccCCCCCCCCCCCCCCHHHH
Q psy13137         60 NRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFD-RHPGVFAQVLNYYRVFRLPLGFKPWTVCMASY  138 (164)
Q Consensus        60 ~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFID-RDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f  138 (164)
                      .=|.|.|||+.|...+..|.... .+|..|+... ........+-++ -+|+.|..+|+|+.+|.+.   ++.+ ....+
T Consensus        26 ~Dv~l~v~~~~~~aHk~vLaa~S-~~F~~~f~~~-~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~---~~~~-~~~~l   99 (120)
T 2if5_A           26 CDVVILVEGREFPTHRSVLAACS-QYFKKLFTSG-AVVDQQNVYEIDFVSAEALTALMDFAYTATLT---VSTA-NVGDI   99 (120)
T ss_dssp             CCEEEEETTEEEEECHHHHHHHC-HHHHHHHHC------CCSEEECCSSCHHHHHHHHHHHHHSCCC---CCGG-GHHHH
T ss_pred             CCeEEEECCEEEeHHHHHHHHhC-HHHHHHhcCC-ccccCCceEEeCCCCHHHHHHHHHHHcCCCCc---cCHH-HHHHH
Confidence            34778899999999999997653 3556666431 111234556554 6889999999999999988   5543 44577


Q ss_pred             HHHHHHHHHh
Q psy13137        139 TSELLKKKKK  148 (164)
Q Consensus       139 ~eEl~y~~~~  148 (164)
                      +.-+++|+..
T Consensus       100 l~~A~~~~i~  109 (120)
T 2if5_A          100 LSAARLLEIP  109 (120)
T ss_dssp             HHHHHHTTCH
T ss_pred             HHHHHHhCCH
Confidence            7888887654

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=95.46  E-value=0.0037  Score=45.13  Aligned_cols=80  Identities=9%  Similarity=-0.018  Sum_probs=57.0

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE--ecCCCChHHHhccccCCCCCCCCCCCCCCHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF--DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASY  138 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI--DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f  138 (164)
                      -|.|.|||+.|...+..|.... .+|..|+...  . .+..++-+  |-+++.|..+|+|+.+|++.   ++.+ ....+
T Consensus        31 Dv~l~v~~~~~~aHk~vLaa~S-~yF~~mf~~~--~-~e~~~i~l~~~v~~~~f~~lL~~iYtg~~~---i~~~-~v~~l  102 (124)
T 2ihc_A           31 DVTIFVEGQRFRAHRSVLAACS-SYFHSRIVGQ--A-DGELNITLPEEVTVKGFEPLIQFAYTAKLI---LSKE-NVDEV  102 (124)
T ss_dssp             CEEEEETTEEEEECHHHHHHHB-HHHHHHHTTC------CEEEECCTTSCHHHHHHHHHHHHHSEEE---EETT-THHHH
T ss_pred             CEEEEECCEEEecHHHHHHHcC-HHHHHHHcCC--C-CCCceEeecCCcCHHHHHHHHHHhcCCCcc---cCHH-HHHHH
Confidence            4778999999999999997542 2556666432  1 13345666  46889999999999999987   5543 35678


Q ss_pred             HHHHHHHHHh
Q psy13137        139 TSELLKKKKK  148 (164)
Q Consensus       139 ~eEl~y~~~~  148 (164)
                      +.-+++|+..
T Consensus       103 l~~A~~~~~~  112 (124)
T 2ihc_A          103 CKCVEFLSVH  112 (124)
T ss_dssp             HHHHHHHTBS
T ss_pred             HHHHHHHCCH
Confidence            8888888643

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=94.99  E-value=0.0048  Score=44.72  Aligned_cols=82  Identities=18%  Similarity=0.129  Sum_probs=57.7

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCHHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYT  139 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~  139 (164)
                      -|.|.|||+.|...+..|.... .+|..|+... ......+++-+ |-+|+.|..+|+|+.+|.+.   ++.+ ....++
T Consensus        27 Dv~l~v~~~~~~~Hk~iL~~~S-~~F~~~f~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~---~~~~-~~~~ll  100 (145)
T 4eoz_A           27 DCCLCVAGQEFQAHKAILAARS-PVFSAMFEHE-MEESKKNRVEINDVEPEVFKEMMCFIYTGKAP---NLDK-MADDLL  100 (145)
T ss_dssp             CEEEEETTEEEEECHHHHHHHC-HHHHHHHHSS-SHHHHHTEEEECSSCHHHHHHHHHHHHHSCCT---TGGG-THHHHH
T ss_pred             ceEEEECCEEEEeehHHHHHcC-HHHHHHHcCC-CcCCCCceEEecCCCHHHHHHHHHhhccCccC---CcHH-HHHHHH
Confidence            4778899999999999997653 3556666421 01112356666 57899999999999999987   5543 334677


Q ss_pred             HHHHHHHHh
Q psy13137        140 SELLKKKKK  148 (164)
Q Consensus       140 eEl~y~~~~  148 (164)
                      .-+++|+..
T Consensus       101 ~~A~~~~~~  109 (145)
T 4eoz_A          101 AAADKYALE  109 (145)
T ss_dssp             HHHHHTTCH
T ss_pred             HHHHHhCHH
Confidence            777777654

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=94.87  E-value=0.019  Score=45.91  Aligned_cols=85  Identities=9%  Similarity=-0.075  Sum_probs=57.5

Q ss_pred             CeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCC-CCCCCCeEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCHHH
Q psy13137         60 NRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGN-YDPVLNEYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMAS  137 (164)
Q Consensus        60 ~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~-~~~~~~eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~  137 (164)
                      .-|.|.|||+.|...+..|.... .+|..|+..... ......++-+ |-+|..|..+|+|+.+|++.   ++.+ ....
T Consensus        32 ~Dv~l~v~~~~f~~Hr~vLaa~S-~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~---i~~~-~v~~  106 (256)
T 3hve_A           32 CDAHLVLDGEEIPVQKNILAAAS-PYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIR---LNED-TIQD  106 (256)
T ss_dssp             CCEEEEETTEEEEECHHHHHTTC-HHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCC---CC-C-CHHH
T ss_pred             cceEEEECCEEEechHHHHHHcC-HHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCc---ccHh-HHHH
Confidence            35788999999999999998663 355666643110 0224456666 57899999999999999988   5543 4567


Q ss_pred             HHHHHHHHHHhh
Q psy13137        138 YTSELLKKKKKK  149 (164)
Q Consensus       138 f~eEl~y~~~~~  149 (164)
                      ++.-+++|+...
T Consensus       107 ll~~A~~l~i~~  118 (256)
T 3hve_A          107 VVQAADLLLLTD  118 (256)
T ss_dssp             HHHHHHHHTCHH
T ss_pred             HHHHHHHHChHH
Confidence            777788876543

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=94.47  E-value=0.018  Score=41.75  Aligned_cols=76  Identities=13%  Similarity=0.048  Sum_probs=55.1

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCHHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYT  139 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~  139 (164)
                      -|+|.|||+.|...+..|.....-+ ..          ...++-+ |-+|+.|..+|+|+.+|++.   ++.+ ....++
T Consensus        32 Dv~l~v~~~~f~aHk~vLaa~S~yF-~~----------~~~~i~l~~v~~~~f~~ll~fiYtg~~~---i~~~-~v~~ll   96 (119)
T 3m5b_A           32 DTLITVGSQEFPAHSLVLAGVSQQL-GR----------RGQWALGEGISPSTFAQLLNFVYGESVE---LQPG-ELRPLQ   96 (119)
T ss_dssp             CEEEEETTEEEEECHHHHHTTCGGG-CC----------CEEEECCSSCCHHHHHHHHHHHTTCCEE---ECGG-GHHHHH
T ss_pred             ceEEEECCEEEeeEHHHHHHcCHHH-hc----------CCCEEEeCCCCHHHHHHHHHHHcCCCcC---cCHH-HHHHHH
Confidence            4788899999999999987764322 11          1233433 36899999999999999988   5443 456788


Q ss_pred             HHHHHHHHhhHH
Q psy13137        140 SELLKKKKKKKK  151 (164)
Q Consensus       140 eEl~y~~~~~~~  151 (164)
                      .-+++|+...=+
T Consensus        97 ~aA~~l~i~~l~  108 (119)
T 3m5b_A           97 EAARALGVQSLE  108 (119)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             HHHHHhCCHHHH
Confidence            888888865433

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=93.17  E-value=0.027  Score=45.63  Aligned_cols=82  Identities=11%  Similarity=0.062  Sum_probs=55.1

Q ss_pred             eEEEEeC---CeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE-------ecCCCChHHHhccccCCCCCCCCCC
Q psy13137         61 RVVLNVG---GIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF-------DRHPGVFAQVLNYYRVFRLPLGFKP  130 (164)
Q Consensus        61 ~I~LNVG---G~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI-------DRDp~~F~~ILnyLRtG~L~~~~~P  130 (164)
                      -|+|.||   |+.|...+..|.... ..|..|+... ......+++-+       |-+|..|..+|+|+.+|.+.   ++
T Consensus        34 Dv~l~v~~~~~~~f~~Hr~vLaa~S-~yF~~mf~~~-~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~---i~  108 (279)
T 3i3n_A           34 DITLCFGGAGGREFRAHRSVLAAAT-EYFTPLLSGQ-FSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIR---VS  108 (279)
T ss_dssp             CEEEECC----CEEEECHHHHHHHC-TTSGGGCCC---------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEE---EE
T ss_pred             CeEEEEcCCCCeEEehHHHHHHHcC-HHHHHHhcCC-CccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcc---cC
Confidence            3788998   999999999998653 2455666421 11234566777       67899999999999999988   55


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy13137        131 WTVCMASYTSELLKKKKK  148 (164)
Q Consensus       131 ~~v~~~~f~eEl~y~~~~  148 (164)
                      .+ ....++.-+++|+..
T Consensus       109 ~~-~v~~ll~~A~~l~i~  125 (279)
T 3i3n_A          109 TG-SVHEVLELADRFLLI  125 (279)
T ss_dssp             TT-THHHHHHHHHHTTCH
T ss_pred             HH-HHHHHHHHHHHHCcH
Confidence            43 455677777777654

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=92.34  E-value=0.04  Score=45.11  Aligned_cols=84  Identities=18%  Similarity=0.105  Sum_probs=58.1

Q ss_pred             CCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCHHH
Q psy13137         59 ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMAS  137 (164)
Q Consensus        59 ~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~  137 (164)
                      -.-|.|.|||+.|...+..|.... ..|..|+... .......++-+ |-+|+.|..+|+|+.+|.+.   .+. -....
T Consensus       174 ~~Dv~l~v~~~~f~~Hk~vLaa~S-~~F~~~f~~~-~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~---~~~-~~~~~  247 (312)
T 3hqi_A          174 FTDCCLCVAGQEFQAHKAILAARS-PVFSAMFEHE-MEESKKNRVEINDVEPEVFKEMMCFIYTGKAP---NLD-KMADD  247 (312)
T ss_dssp             SCCEEEEETTEEEEECHHHHHHHC-HHHHHHTTC------CCSEEEECSSCHHHHHHHHHHHHHSCCT---THH-HHHHH
T ss_pred             CCceEEEECCEEEeHHHHHHHHcC-HHHHHHhccC-ccccCCceEEecCCCHHHHHHHHHhhcCCCCC---ChH-HHHHH
Confidence            346889999999999999997542 2455555421 11235567777 57999999999999999987   433 23345


Q ss_pred             HHHHHHHHHHh
Q psy13137        138 YTSELLKKKKK  148 (164)
Q Consensus       138 f~eEl~y~~~~  148 (164)
                      ++.-+++|+..
T Consensus       248 ll~~A~~~~~~  258 (312)
T 3hqi_A          248 LLAAADKYALE  258 (312)
T ss_dssp             HHHHHHHTTCH
T ss_pred             HHHHHHHhCHH
Confidence            77777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d3kvta_	103	d.42.1.2 (A:) akv3.1 voltage-gated potassium chann	1e-23
d1t1da_	100	d.42.1.2 (A:) Shaker potassium channel {California	4e-23
d1nn7a_	105	d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus	3e-21

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 103

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

 Score = 87.3 bits (216), Expect = 1e-23
 Identities = 56/68 (82%), Positives = 62/68 (91%)

Query: 59  ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNY 118
           ENRV++NVGGIRHETYKATLKKIPATRLSRLTE + NYDPVLNEYFFDRHPGVFAQ++NY
Sbjct: 1   ENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINY 60

Query: 119 YRVFRLPL 126
           YR  +L  
Sbjct: 61  YRSGKLHY 68

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 100

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

 Score = 85.6 bits (212), Expect = 4e-23
 Identities = 27/60 (45%), Positives = 36/60 (60%)

Query: 61  RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYR 120
           RVV+NV G+R ET   TL + P T L    +    YDP+ NEYFFDR+   F  +L +Y+
Sbjct: 2   RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 105

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.1 bits (200), Expect = 3e-21
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 62  VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV 121
           +VLNV G R +T++ TL++ P T L    E    Y P   +YFFDR P +F  +LN+YR 
Sbjct: 2   IVLNVSGTRFQTWQDTLERYPDTLLGSS-ERDFFYHPETQQYFFDRDPDIFRHILNFYRT 60

Query: 122 FRLPLGFKPWTVCMASYTSEL 142
            +L     P   C+++Y  EL
Sbjct: 61  GKLHY---PRHECISAYDEEL 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	99.96
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	99.96
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	99.95
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	96.43
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	95.79

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=99.96  E-value=6.2e-30  Score=186.88  Aligned_cols=87  Identities=70%  Similarity=1.061  Sum_probs=82.3

Q ss_pred             CCeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCHHHH
Q psy13137         59 ENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASY  138 (164)
Q Consensus        59 ~~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f  138 (164)
                      +++|+|||||++|+|+++||.++|+|+|+.+++....+++++++|||||||.+|++||||||+|+|+   +|+++|...|
T Consensus         1 ~~rI~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~g~l~---~p~~~~~~~l   77 (103)
T d3kvta_           1 ENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKLH---YPTDVCGPLF   77 (103)
T ss_dssp             CCEEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHHHSCBC---CCSSSCHHHH
T ss_pred             CCEEEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEecCCHHHHHHHHHHHccCCcc---cccccCHHHH
Confidence            4789999999999999999999999999999987767778999999999999999999999999999   9999999999


Q ss_pred             HHHHHHHHHh
Q psy13137        139 TSELLKKKKK  148 (164)
Q Consensus       139 ~eEl~y~~~~  148 (164)
                      ++|++||.+.
T Consensus        78 ~~Ea~yygi~   87 (103)
T d3kvta_          78 EEELEFWGLD   87 (103)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHcCCC
Confidence            9999999874

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=99.96  E-value=1.6e-29  Score=184.24  Aligned_cols=87  Identities=37%  Similarity=0.586  Sum_probs=80.7

Q ss_pred             CeEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccC-CCCCCCCCCCCCCHHHH
Q psy13137         60 NRVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRV-FRLPLGFKPWTVCMASY  138 (164)
Q Consensus        60 ~~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRt-G~L~~~~~P~~v~~~~f  138 (164)
                      ++|+|||||++|+|+++||.++|+|+|+.+++....+++++++|||||||.+|++||||||+ |.++   +|+++|...|
T Consensus         1 drI~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~FiDRdp~~F~~IL~flR~~~~l~---~~~~~~~~~l   77 (100)
T d1t1da_           1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLR---RPVNVPLDVF   77 (100)
T ss_dssp             CEEEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEECSCSTTHHHHHHHHHTTSCCC---CCTTSCHHHH
T ss_pred             CeEEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCcCCCCCCeEEEecCHHHHHHHHHHHhcCCCcC---CCCcccHHHH
Confidence            58999999999999999999999999999998766678899999999999999999999998 5788   8999999999


Q ss_pred             HHHHHHHHHhh
Q psy13137        139 TSELLKKKKKK  149 (164)
Q Consensus       139 ~eEl~y~~~~~  149 (164)
                      .+|++||.+--
T Consensus        78 ~~Ea~y~gi~~   88 (100)
T d1t1da_          78 SEEIKFYELGE   88 (100)
T ss_dssp             HHHHHHTTCCH
T ss_pred             HHHHHHcCCCH
Confidence            99999998643

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.6e-28  Score=179.97  Aligned_cols=84  Identities=37%  Similarity=0.641  Sum_probs=77.7

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEEecCCCChHHHhccccCCCCCCCCCCCCCCHHHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFFDRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYTS  140 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFIDRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~e  140 (164)
                      +|+|||||++|+|+++||.++|+|+|+++.+. ..+++++++|||||||.+|++||||||+|+++   +|+++|...|.+
T Consensus         1 iI~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~-~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~l~---~p~~~~~~~l~~   76 (105)
T d1nn7a_           1 LIVLNVSGTRFQTWQDTLERYPDTLLGSSERD-FFYHPETQQYFFDRDPDIFRHILNFYRTGKLH---YPRHECISAYDE   76 (105)
T ss_dssp             CEEEEETTEEEEECHHHHHTSCSSSTTSGGGG-GGEEGGGTEEEECSCTTTHHHHHHHHHHSCBC---CCTTSCHHHHHH
T ss_pred             CEEEEECCEEEEEeHHHHhcCCCCCccccccc-cCcCCCCCcEEEeCCHHHHHHHHHHHhcCccc---cCCCccHHHHHH
Confidence            58999999999999999999999999998754 34567899999999999999999999999999   999999999999


Q ss_pred             HHHHHHHh
Q psy13137        141 ELLKKKKK  148 (164)
Q Consensus       141 El~y~~~~  148 (164)
                      |++||.+.
T Consensus        77 Ea~fygi~   84 (105)
T d1nn7a_          77 ELAFFGLI   84 (105)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHcCCC
Confidence            99999763

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00042  Score=48.69  Aligned_cols=80  Identities=14%  Similarity=0.100  Sum_probs=57.2

Q ss_pred             EEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE--ecCCCChHHHhccccCCCCCCCCCCCCCCHHHHH
Q psy13137         62 VVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF--DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYT  139 (164)
Q Consensus        62 I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI--DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~  139 (164)
                      |.|.|+|..|...+..|.... ..|..|+...  .........+  |-+|+.|..||+|+.+|++.   ++.+ ....++
T Consensus        28 v~l~v~~~~~~~Hk~vLa~~S-~~F~~~f~~~--~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~~---i~~~-~v~~ll  100 (122)
T d1r29a_          28 VVIVVSREQFRAHKTVLMACS-GLFYSIFTDQ--LKRNLSVINLDPEINPEGFNILLDFMYTSRLN---LREG-NIMAVM  100 (122)
T ss_dssp             EEEEETTEEEEECHHHHHHHC-HHHHHHHTST--TTTTCSEEECCTTSCHHHHHHHHHHHHHSCCC---CCTT-THHHHH
T ss_pred             EEEEECCEEEEEehHHhhhCC-HHHHHHhccc--hhhhcceeeeecccCHHHHHHHHhhhcCCeec---Cchh-hHHHHH
Confidence            677799999999999998664 2445555421  1222223222  47889999999999999988   6654 566788


Q ss_pred             HHHHHHHHh
Q psy13137        140 SELLKKKKK  148 (164)
Q Consensus       140 eEl~y~~~~  148 (164)
                      .-++||+.+
T Consensus       101 ~~A~~l~i~  109 (122)
T d1r29a_         101 ATAMYLQME  109 (122)
T ss_dssp             HHHHHTTCH
T ss_pred             HHHHHHCcH
Confidence            888988765

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0031  Score=44.42  Aligned_cols=78  Identities=15%  Similarity=0.089  Sum_probs=58.1

Q ss_pred             eEEEEeCCeEEEeeHHHHhcCCCccccchhhhcCCCCCCCCeEEE-ecCCCChHHHhccccCCCCCCCCCCCCCCHHHHH
Q psy13137         61 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALGNYDPVLNEYFF-DRHPGVFAQVLNYYRVFRLPLGFKPWTVCMASYT  139 (164)
Q Consensus        61 ~I~LNVGG~~F~T~~sTL~r~P~S~L~~l~~~~~~~~~~~~eyFI-DRDp~~F~~ILnyLRtG~L~~~~~P~~v~~~~f~  139 (164)
                      =|.|.|||..|...+-.|.... ..|..+++.      +.+++-+ +=+|+.|..+|+|+-+|++.   ++.+ ....++
T Consensus        30 Dv~l~v~~~~~~aHk~vLaa~S-~~F~~lf~~------~~~~i~~~~v~~~~f~~ll~~~Ytg~i~---l~~~-~v~~ll   98 (121)
T d1buoa_          30 DVVIMVDSQEFHAHRTVLACTS-KMFEILFHR------NSQHYTLDFLSPKTFQQILEYAYTATLQ---AKAE-DLDDLL   98 (121)
T ss_dssp             CEEEEESSCEEEECHHHHHHHC-HHHHHHTTS------CCSEEEECSSCHHHHHHHHHHHHHSCCC---CCGG-GHHHHH
T ss_pred             eEEEEECCEEEEEEHHHhcccC-hhhhhhccC------ccceeecCCCCHHHHHHHHHheEccccC---CcHH-HHHHHH
Confidence            3778899999999998886653 345666542      3456656 37899999999999999988   5554 556788


Q ss_pred             HHHHHHHHhh
Q psy13137        140 SELLKKKKKK  149 (164)
Q Consensus       140 eEl~y~~~~~  149 (164)
                      .-+++|+...
T Consensus        99 ~~A~~l~~~~  108 (121)
T d1buoa_          99 YAAEILEIEY  108 (121)
T ss_dssp             HHHHHHTCHH
T ss_pred             HHHHHhCCHH
Confidence            8888887543