Psyllid ID: psy13140

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MSSSLDRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
msssldriredcpldkdqlgyqTWGLLHTIAayypekptadeEREMKTFFMLLgkfypcescardfssllklrppatssQRALAGWLCWVHNhinqklgkpqfdcsrlderwrdgwddgscd
Flexible Loop (DISEMBL)
MSSSLDRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHInqklgkpqfdcsrlderwrdgwddgscd
Low Complexity Region (SEG)
MSSSLDRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD
Disordered region (IsUnstruct)
*************LDKDQLGYQTWGLLHTIAAYYPEK*******EMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRD********
Disordered Region (DISOPRED)
************PL*KDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRP***SSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDG*C*
Disordered Region (DISEMBL)
MSSSLDRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD
Disordered Region (DISPRO)
*****DRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDD**C*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSLDRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
P56213	198	FAD-linked sulfhydryl oxi	yes	N/A	0.950	0.585	0.543	4e-37
Q63042	198	FAD-linked sulfhydryl oxi	no	N/A	0.950	0.585	0.543	1e-36
P55789	205	FAD-linked sulfhydryl oxi	yes	N/A	0.950	0.565	0.534	4e-35
P27882	189	Mitochondrial FAD-linked	yes	N/A	0.868	0.560	0.443	3e-25
Q8GXX0	191	FAD-linked sulfhydryl oxi	yes	N/A	0.991	0.633	0.412	2e-23
O14144	182	Mitochondrial FAD-linked	yes	N/A	0.745	0.5	0.397	4e-16
Q12284	196	FAD-linked sulfhydryl oxi	no	N/A	0.844	0.525	0.359	8e-16
Q9Y806	192	FAD-linked sulfhydryl oxi	no	N/A	0.754	0.479	0.336	2e-14
Q5UP54	292	Probable FAD-linked sulfh	N/A	N/A	0.647	0.270	0.297	1e-06
Q5UQV6	143	Probable FAD-linked sulfh	N/A	N/A	0.713	0.608	0.288	0.0001

>sp|P56213|ALR_MOUSE FAD-linked sulfhydryl oxidase ALR OS=Mus musculus GN=Gfer PE=2 SV=2

 Score =  152 bits (385), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 85/116 (73%)

Query: 7   RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
           + REDCP D+++LG  TW  LHT+AAYYP++PT +++++M  F  +  KFYPCE CA D 
Sbjct: 83  KFREDCPQDREELGRHTWAFLHTLAAYYPDRPTPEQQQDMAQFIHIFSKFYPCEECAEDI 142

Query: 67  SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
              +    P TS++ + + WLC +HN +N+KLGKP FDCSR+DERWRDGW DGSCD
Sbjct: 143 RKRIGRNQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSCD 198

FAD-dependent sulfhydryl oxidase. Within the mitochondrial intermembrane space, participates in a chain of disulfide exchange reactions with MIA40, that generate disulfide bonds in a number of resident proteins with twin Cx3C and Cx9C motifs.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 8EC: .EC: 3EC: .EC: 2

>sp|Q63042|ALR_RAT FAD-linked sulfhydryl oxidase ALR OS=Rattus norvegicus GN=Gfer PE=1 SV=2

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 84/116 (72%)

Query: 7   RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
           + REDCP D+++LG  TW  LHT+AAYYP+ PT +++++M  F  +  KFYPCE CA D 
Sbjct: 83  KFREDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDI 142

Query: 67  SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
              +    P TS++ + + WLC +HN +N+KLGKP FDCSR+DERWRDGW DGSCD
Sbjct: 143 RKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSCD 198

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation. Within the mitochondrial intermembrane space, participates in a chain of disulfide exchange reactions with MIA40, that generate disulfide bonds in a number of resident proteins with twin Cx3C and Cx9C motifs. May have a function in liver regeneration and spermatogenesis.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|P55789|ALR_HUMAN FAD-linked sulfhydryl oxidase ALR OS=Homo sapiens GN=GFER PE=1 SV=2

 Score =  146 bits (368), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 82/116 (70%)

Query: 7   RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
           + REDCP D+++LG  +W +LHT+AAYYP+ PT +++++M  F  L  KFYPCE CA D 
Sbjct: 90  KFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDL 149

Query: 67  SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
              L    P T ++     WLC +HN +N+KLGKP FDCS++DERWRDGW DGSCD
Sbjct: 150 RKRLCRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 205

Isoform 2: May act as an autocrine hepatotrophic growth factor promoting liver regeneration.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|P27882|ERV1_YEAST Mitochondrial FAD-linked sulfhydryl oxidase ERV1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV1 PE=1 SV=2

 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 68/106 (64%)

Query: 13  PLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKL 72
           P D +QLG  +W LLH++AA YP +PT  ++ EMK F  +    YPC  CA+DF   ++ 
Sbjct: 84  PPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIRE 143

Query: 73  RPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDD 118
             P   S+  L  W+C  HN +N+KL KP+FDC+  ++RW+DGWD+
Sbjct: 144 NAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE 189

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation. Required for the import and folding of small cysteine-containing proteins in the mitochondrial intermembrane space (IMS). Forms a redox cycle with MIA40 that involves a disulfide relay system. Important for maintaining the cysteine residues in MIA40 in an oxidized state. Reduced ERV1 is reoxidized by cytochrome c. Required for the maturation of cytoplasmic, but not of mitochondrial Fe/S proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|Q8GXX0|ERV1_ARATH FAD-linked sulfhydryl oxidase ERV1 OS=Arabidopsis thaliana GN=ERV1 PE=1 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 73/126 (57%), Gaps = 5/126 (3%)

Query: 2   SSSLDRI----REDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFY 57
           SSSL ++    +   P+ K+ LG  TW  LHT+AA YPEKPT  +++++K    +L + Y
Sbjct: 58  SSSLQKLPLKDKSTGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMY 117

Query: 58  PCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERW-RDGW 116
           PC  CA  F  +L+  P    SQ   + WLC VHN +N+ LGK  F C R+D RW +   
Sbjct: 118 PCRECADHFKEILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARWGKLEC 177

Query: 117 DDGSCD 122
           +  SCD
Sbjct: 178 EQKSCD 183

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation. Oxidizes thioredoxin in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|O14144|ERV1_SCHPO Mitochondrial FAD-linked sulfhydryl oxidase erv1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erv1 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 15  DKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKL-- 72
           D  +LG  TW  LH +AA +P+ PT  ++ +M +F     KFYPC SCA D    +    
Sbjct: 78  DVAELGRSTWTFLHAMAANFPKNPTPTQQNDMSSFLYNFSKFYPCWSCAEDLRIWMAKYG 137

Query: 73  RPPATSSQRALAGWLCWVHNHINQKLGKPQFDC 105
             P   S+ +L  W+C  HN +N++LGKP F+C
Sbjct: 138 NSPRVDSRESLCEWICEAHNDVNERLGKPLFNC 170

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation. Required for the import and folding of small cysteine-containing proteins in the mitochondrial intermembrane space (IMS).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|Q12284|ERV2_YEAST FAD-linked sulfhydryl oxidase ERV2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV2 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 59/103 (57%)

Query: 16  KDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPP 75
           K ++G  +W   HT+ A +P++PT +E  ++ TF  L  + YPC  C+  F  L++  P 
Sbjct: 78  KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPV 137

Query: 76  ATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDD 118
            TSS+ A A W C +HN +N+ L K  +DC+ + E +  G  D
Sbjct: 138 QTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSD 180

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation in the endoplasmic reticulum lumen in parallel to ERO1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9Y806|ERV2_SCHPO FAD-linked sulfhydryl oxidase erv2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erv2 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 51/92 (55%)

Query: 24  WGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRAL 83
           W L+HT+ + YP +PT DE   ++ +        PC   + +   +L + PP TSS++A 
Sbjct: 74  WKLIHTVVSNYPNRPTLDERDILRHYLFSSAITMPCGEYSVELQKILDVHPPQTSSRKAA 133

Query: 84  AGWLCWVHNHINQKLGKPQFDCSRLDERWRDG 115
             W C VHN +N+K+ +P+  C   +ER+  G
Sbjct: 134 TTWACKVHNQLNEKMNQPKTSCDGFNERYVIG 165

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation in the endoplasmic reticulum lumen.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|Q5UP54|YR596_MIMIV Probable FAD-linked sulfhydryl oxidase R596 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R596 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 20  GYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSS 79
           G   W   H +   YP  PT+D++R  K +F+ LG   PC  C   +   +     A ++
Sbjct: 41  GTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTN 100

Query: 80  Q-----RALAGWLCWVHNHINQKL 98
           +       L  W   VHN +N KL
Sbjct: 101 EVLRNRHTLTKWFYDVHNAVNNKL 124

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation.

Acanthamoeba polyphaga (taxid: 5757)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|Q5UQV6|YR368_MIMIV Probable FAD-linked sulfhydryl oxidase R368 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R368 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 14  LDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLR 73
           +  +Q G   W   H +A  YP  PT +++    TFF       PC  C  +++  L   
Sbjct: 1   MSPEQWGIYGWTFSHAVALGYPINPTEEDKLRYYTFFNSYRYVLPCGKCRINYADHLNKY 60

Query: 74  P---PATSSQRALAGWLCWVHNHINQKLGK 100
           P      SS+  L  W   +HN +N   GK
Sbjct: 61  PLTDEVLSSRENLVKWTIDIHNVVNYYTGK 90

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation.

Acanthamoeba polyphaga (taxid: 5757)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
158295898	188	AGAP006470-PA [Anopheles gambiae str. PE	0.918	0.595	0.651	1e-39
345479430	165	PREDICTED: FAD-linked sulfhydryl oxidase	0.991	0.733	0.586	3e-39
91078400	161	PREDICTED: similar to AGAP006470-PA [Tri	0.942	0.714	0.617	1e-38
194762896	275	GF20218 [Drosophila ananassae] gi|190629	1.0	0.443	0.573	2e-38
170052758	179	augmenter of liver regeneration [Culex q	1.0	0.681	0.565	3e-38
195167180	185	GL15019 [Drosophila persimilis] gi|19846	0.934	0.616	0.605	8e-38
194893187	265	GG19256 [Drosophila erecta] gi|190649478	0.934	0.430	0.614	9e-38
195133644	191	GI16104 [Drosophila mojavensis] gi|19390	0.934	0.596	0.614	9e-38
195345839	265	GM22993 [Drosophila sechellia] gi|194134	1.0	0.460	0.573	1e-37
442617030	266	augmenter of liver regeneration, isoform	0.934	0.428	0.605	2e-37

>gi|158295898|ref|XP_557147.3| AGAP006470-PA [Anopheles gambiae str. PEST] gi|157016253|gb|EAL40090.3| AGAP006470-PA [Anopheles gambiae str. PEST]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 87/112 (77%)

Query: 11  DCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLL 70
           +CP+DK+QLG  TWGLLHTIAAYYP  PT  EER ++TFF  L K YPCE CA+DF   L
Sbjct: 77  NCPIDKEQLGRYTWGLLHTIAAYYPTTPTDAEERNVRTFFTSLSKLYPCEYCAKDFQQEL 136

Query: 71  KLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
           K  PP T SQ AL+ WLC +HN +N KLGKP+FDC++++ERWRDGW DGSCD
Sbjct: 137 KEMPPETKSQHALSQWLCRIHNRVNVKLGKPEFDCTKVNERWRDGWLDGSCD 188

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479430|ref|XP_003423948.1| PREDICTED: FAD-linked sulfhydryl oxidase ALR-like [Nasonia vitripennis]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 91/121 (75%)

Query: 2   SSSLDRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCES 61
           + +++  R+DCPLD+D+LG +TWG LHT+AAYYPE PT ++ ++MKTFF L+ KFYPC  
Sbjct: 45  TETMNARRKDCPLDRDELGSRTWGFLHTMAAYYPESPTVEQRKDMKTFFHLISKFYPCNV 104

Query: 62  CARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSC 121
           CA D    LK  PP T S   L+ WLC VHN +N+KLGKP FDCS +++RWRDGW DGSC
Sbjct: 105 CAEDLQEQLKKSPPKTDSNHQLSQWLCDVHNEVNKKLGKPVFDCSLINQRWRDGWLDGSC 164

Query: 122 D 122
           D
Sbjct: 165 D 165

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078400|ref|XP_974453.1| PREDICTED: similar to AGAP006470-PA [Tribolium castaneum] gi|270003989|gb|EFA00437.1| hypothetical protein TcasGA2_TC003291 [Tribolium castaneum]

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/115 (61%), Positives = 86/115 (74%)

Query: 8   IREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFS 67
            R DCPLDKD+LG  +WGLLHTIAA YPE PT  E+++M +FF L  KFYPC+ CA D  
Sbjct: 47  FRTDCPLDKDELGRSSWGLLHTIAAKYPENPTRTEQKDMTSFFTLFSKFYPCDFCAEDLR 106

Query: 68  SLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
             LK  PP  +SQ  L+ WLC +HN +N KLGKP+FDCS+++ERWRDGW DGSCD
Sbjct: 107 KELKADPPQIASQEDLSQWLCRLHNRVNNKLGKPEFDCSKVNERWRDGWADGSCD 161

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194762896|ref|XP_001963570.1| GF20218 [Drosophila ananassae] gi|190629229|gb|EDV44646.1| GF20218 [Drosophila ananassae]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 93/122 (76%)

Query: 1   MSSSLDRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCE 60
           +S + + +R+DCPLDK +LG  TWGLLHT+AA+Y + PT  E+R+MKTFF +L + YPCE
Sbjct: 154 ISVNAEEVRDDCPLDKVRLGISTWGLLHTMAAFYSDNPTDTEKRDMKTFFEVLSRLYPCE 213

Query: 61  SCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGS 120
            CA+DF + L + P   +SQ+ LA WLC  HN +N KLGKP FDCS+++ERWRDGW DGS
Sbjct: 214 FCAKDFRTDLDVNPINVNSQKELAMWLCKFHNRVNDKLGKPLFDCSKVNERWRDGWLDGS 273

Query: 121 CD 122
           C+
Sbjct: 274 CE 275

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170052758|ref|XP_001862367.1| augmenter of liver regeneration [Culex quinquefasciatus] gi|167873589|gb|EDS36972.1| augmenter of liver regeneration [Culex quinquefasciatus]

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 69/122 (56%), Positives = 94/122 (77%)

Query: 1   MSSSLDRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCE 60
            +++ D++ + CPLDK++LG  TWGLLHT+AAY+P++PTA+E+  ++ FF    K YPCE
Sbjct: 58  TTNTGDQLPKHCPLDKERLGRHTWGLLHTMAAYFPDQPTAEEQSNVRQFFNAFSKVYPCE 117

Query: 61  SCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGS 120
            CA+DF   LK  PP T+SQ +L+ WLC +HN +NQK+GKP FDCSR++ERWRDG  DGS
Sbjct: 118 YCAKDFQQELKTDPPETTSQHSLSQWLCRMHNRVNQKIGKPAFDCSRVNERWRDGPADGS 177

Query: 121 CD 122
           CD
Sbjct: 178 CD 179

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195167180|ref|XP_002024412.1| GL15019 [Drosophila persimilis] gi|198469081|ref|XP_001354903.2| GA11683 [Drosophila pseudoobscura pseudoobscura] gi|194107785|gb|EDW29828.1| GL15019 [Drosophila persimilis] gi|198146707|gb|EAL31959.2| GA11683 [Drosophila pseudoobscura pseudoobscura]

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 69/114 (60%), Positives = 88/114 (77%)

Query: 9   REDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSS 68
           REDCPLDK  LG  TWGLLHT+AA+Y + PT +E+R+MK+FF +L + YPCE CA+DF +
Sbjct: 72  REDCPLDKVSLGISTWGLLHTMAAFYSDNPTDNEKRDMKSFFEVLSRLYPCEFCAKDFRT 131

Query: 69  LLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
            L + P   +SQ+ L+ WLC  HN +N KLGKP FDCS+++ERWRDGW DGSCD
Sbjct: 132 DLTVNPINVNSQKELSSWLCMFHNRVNDKLGKPLFDCSKVNERWRDGWLDGSCD 185

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194893187|ref|XP_001977829.1| GG19256 [Drosophila erecta] gi|190649478|gb|EDV46756.1| GG19256 [Drosophila erecta]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 88/114 (77%)

Query: 9   REDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSS 68
           REDCPLDK +LG  TWGLLHT+AA+Y + PT  E+R+MKTFF +L + YPCE CA+DF +
Sbjct: 152 REDCPLDKVRLGISTWGLLHTMAAFYSDNPTDTEKRDMKTFFEVLSRLYPCEFCAKDFRT 211

Query: 69  LLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
            L + P   +SQ+ LA WLC  HN +N KLGKP FDC++++ERWRDGW DGSCD
Sbjct: 212 DLDVNPINVNSQKELALWLCKFHNRVNDKLGKPLFDCAKVNERWRDGWLDGSCD 265

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195133644|ref|XP_002011249.1| GI16104 [Drosophila mojavensis] gi|193907224|gb|EDW06091.1| GI16104 [Drosophila mojavensis]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 89/114 (78%)

Query: 9   REDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSS 68
           REDCPLDK +LG  TWGLLHT+AA+Y + PT  E+R+M+TFF +L + YPCE CA+DF S
Sbjct: 78  REDCPLDKVRLGISTWGLLHTMAAFYSDNPTDTEKRDMRTFFEVLSRLYPCEYCAKDFRS 137

Query: 69  LLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
            +++ P   +SQ+ LA WLC  HN +N KLGKP FDCS+++ERWRDGW DGSCD
Sbjct: 138 DIEVNPVNVNSQKDLAMWLCNFHNRVNDKLGKPLFDCSKVNERWRDGWLDGSCD 191

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195345839|ref|XP_002039476.1| GM22993 [Drosophila sechellia] gi|194134702|gb|EDW56218.1| GM22993 [Drosophila sechellia]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 93/122 (76%)

Query: 1   MSSSLDRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCE 60
           ++++ D  R+DCPLDK +LG  TWGLLHT+AA+Y + PT  E+R+MKTFF +L + YPCE
Sbjct: 144 VNAAEDLPRDDCPLDKVRLGISTWGLLHTMAAFYSDNPTDTEKRDMKTFFEVLSRLYPCE 203

Query: 61  SCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGS 120
            CA+DF + L + P   +SQ+ LA WLC  HN +N KLGKP FDC++++ERWRDGW DGS
Sbjct: 204 FCAKDFRTDLDVNPINVNSQKELALWLCKFHNRVNDKLGKPLFDCTKVNERWRDGWLDGS 263

Query: 121 CD 122
           CD
Sbjct: 264 CD 265

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442617030|ref|NP_001259731.1| augmenter of liver regeneration, isoform B [Drosophila melanogaster] gi|225380638|gb|ACN88650.1| MIP09632p [Drosophila melanogaster] gi|440216967|gb|AGB95570.1| augmenter of liver regeneration, isoform B [Drosophila melanogaster]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/114 (60%), Positives = 88/114 (77%)

Query: 9   REDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSS 68
           R+DCPLDK +LG  TWGLLHT+AA+Y + PT  E+R+MKTFF +L + YPCE CA+DF +
Sbjct: 153 RDDCPLDKVRLGISTWGLLHTMAAFYSDNPTDTEKRDMKTFFEVLSRLYPCEFCAKDFRT 212

Query: 69  LLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
            L + P   +SQ+ LA WLC  HN +N KLGKP FDC++++ERWRDGW DGSCD
Sbjct: 213 DLDVNPINVNSQKELALWLCKFHNRVNDKLGKPLFDCTKVNERWRDGWLDGSCD 266

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
FB|FBgn0031068	261	Alr "Augmenter of liver regene	0.934	0.436	0.605	4.3e-38
UNIPROTKB|F1NSV1	189	GFER "Uncharacterized protein"	0.918	0.592	0.580	1.5e-37
MGI|MGI:107757	198	Gfer "growth factor, erv1 (S.	0.950	0.585	0.543	1.5e-37
RGD|61845	198	Gfer "growth factor, augmenter	0.950	0.585	0.543	3e-37
UNIPROTKB|E2QWZ7	358	GFER "Uncharacterized protein"	0.950	0.324	0.543	1e-36
UNIPROTKB|H3BQQ4	130	GFER "Growth factor, augmenter	0.950	0.892	0.534	3.5e-36
UNIPROTKB|P55789	205	GFER "FAD-linked sulfhydryl ox	0.950	0.565	0.534	3.5e-36
UNIPROTKB|E1BF52	205	GFER "Uncharacterized protein"	0.950	0.565	0.525	1.9e-35
UNIPROTKB|F1RFB9	205	GFER "Uncharacterized protein"	0.950	0.565	0.517	5.1e-35
ZFIN|ZDB-GENE-060810-186	191	gfer "growth factor, augmenter	0.918	0.586	0.535	1.7e-34

FB|FBgn0031068 Alr "Augmenter of liver regeneration" [Drosophila melanogaster (taxid:7227)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 69/114 (60%), Positives = 88/114 (77%)

Query:     9 REDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSS 68
             R+DCPLDK +LG  TWGLLHT+AA+Y + PT  E+R+MKTFF +L + YPCE CA+DF +
Sbjct:   148 RDDCPLDKVRLGISTWGLLHTMAAFYSDNPTDTEKRDMKTFFEVLSRLYPCEFCAKDFRT 207

Query:    69 LLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
              L + P   +SQ+ LA WLC  HN +N KLGKP FDC++++ERWRDGW DGSCD
Sbjct:   208 DLDVNPINVNSQKELALWLCKFHNRVNDKLGKPLFDCTKVNERWRDGWLDGSCD 261

GO:0016971 "flavin-linked sulfhydryl oxidase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042246 "tissue regeneration" evidence=IEP;IMP

UNIPROTKB|F1NSV1 GFER "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 65/112 (58%), Positives = 82/112 (73%)

Query:    11 DCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLL 70
             DCPLD +QLG  TW  LHT+AAYYPE+P+  +++EM+ F  L  KFYPCE CA D    L
Sbjct:    78 DCPLDSEQLGRSTWAFLHTMAAYYPERPSGTQQQEMRDFIHLFSKFYPCEHCAEDLRERL 137

Query:    71 KLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
             +   P TS++   + WLC +HN +N+KLGK +FDCSR+DERWRDGW DGSCD
Sbjct:   138 RTNQPDTSNRNNFSQWLCLLHNEVNRKLGKSEFDCSRVDERWRDGWKDGSCD 189

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:107757 Gfer "growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)" [Mus musculus (taxid:10090)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 63/116 (54%), Positives = 85/116 (73%)

Query:     7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
             + REDCP D+++LG  TW  LHT+AAYYP++PT +++++M  F  +  KFYPCE CA D 
Sbjct:    83 KFREDCPQDREELGRHTWAFLHTLAAYYPDRPTPEQQQDMAQFIHIFSKFYPCEECAEDI 142

Query:    67 SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
                +    P TS++ + + WLC +HN +N+KLGKP FDCSR+DERWRDGW DGSCD
Sbjct:   143 RKRIGRNQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSCD 198

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008083 "growth factor activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|61845 Gfer "growth factor, augmenter of liver regeneration" [Rattus norvegicus (taxid:10116)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 63/116 (54%), Positives = 84/116 (72%)

Query:     7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
             + REDCP D+++LG  TW  LHT+AAYYP+ PT +++++M  F  +  KFYPCE CA D 
Sbjct:    83 KFREDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDI 142

Query:    67 SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
                +    P TS++ + + WLC +HN +N+KLGKP FDCSR+DERWRDGW DGSCD
Sbjct:   143 RKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSCD 198

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=ISO;ISS

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO;ISS

UNIPROTKB|E2QWZ7 GFER "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 63/116 (54%), Positives = 83/116 (71%)

Query:     7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
             + REDCP D+++LG  +W +LHT+AAYYP+ PT +++R+M  F  L  KFYPCE CA D 
Sbjct:   243 KFREDCPEDREELGRHSWAVLHTLAAYYPDLPTPEQQRDMTQFIHLFSKFYPCEECAEDI 302

Query:    67 SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
                +    P T ++  L  WLC +HN +N+KLGKP FDCS++DERWRDGW DGSCD
Sbjct:   303 RKRICRNQPDTRTRACLTQWLCRLHNEVNRKLGKPDFDCSQVDERWRDGWKDGSCD 358

GO:0005739 "mitochondrion" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

UNIPROTKB|H3BQQ4 GFER "Growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae), isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 62/116 (53%), Positives = 82/116 (70%)

Query:     7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
             + REDCP D+++LG  +W +LHT+AAYYP+ PT +++++M  F  L  KFYPCE CA D 
Sbjct:    15 KFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDL 74

Query:    67 SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
                L    P T ++     WLC +HN +N+KLGKP FDCS++DERWRDGW DGSCD
Sbjct:    75 RKRLCRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 130

GO:0016972 "thiol oxidase activity" evidence=IEA

UNIPROTKB|P55789 GFER "FAD-linked sulfhydryl oxidase ALR" [Homo sapiens (taxid:9606)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 62/116 (53%), Positives = 82/116 (70%)

Query:     7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
             + REDCP D+++LG  +W +LHT+AAYYP+ PT +++++M  F  L  KFYPCE CA D 
Sbjct:    90 KFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDL 149

Query:    67 SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
                L    P T ++     WLC +HN +N+KLGKP FDCS++DERWRDGW DGSCD
Sbjct:   150 RKRLCRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 205

GO:0008083 "growth factor activity" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0007283 "spermatogenesis" evidence=NAS

GO:0008283 "cell proliferation" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|E1BF52 GFER "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 61/116 (52%), Positives = 82/116 (70%)

Query:     7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
             + REDCP D+++LG  +W +LHT+AAYYP+ PT +++++M  F  L  KFYPCE CA D 
Sbjct:    90 KFREDCPQDREELGRNSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDI 149

Query:    67 SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
                +    P T ++ +   WLC +HN +N+KLGKP FDCS +DERWRDGW DGSCD
Sbjct:   150 RKRIYRDQPDTRTRVSFTQWLCRLHNEVNRKLGKPDFDCSLVDERWRDGWKDGSCD 205

GO:0005739 "mitochondrion" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

UNIPROTKB|F1RFB9 GFER "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 60/116 (51%), Positives = 82/116 (70%)

Query:     7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
             + REDCP D+++LG  +W +LHT+AAYYP+ PT +++++M     L  KFYPCE CA D 
Sbjct:    90 KFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQLVNLFSKFYPCEECAEDI 149

Query:    67 SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
                +    P T ++     WLC +HN +N+KLGKP+FDCS++DERWRDGW DGSCD
Sbjct:   150 RRRICRNQPDTRTRAHFTQWLCRLHNEVNRKLGKPEFDCSQVDERWRDGWKDGSCD 205

GO:0005739 "mitochondrion" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

ZFIN|ZDB-GENE-060810-186 gfer "growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 60/112 (53%), Positives = 80/112 (71%)

Query:    11 DCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLL 70
             +CPLD+++LG  +W  LHT+AAYYP+ P+ +++ EM  F  L  K +PC+ CA D  + L
Sbjct:    80 ECPLDREELGRSSWSFLHTMAAYYPDAPSTEQQLEMTQFINLFSKVFPCDECAEDLRTRL 139

Query:    71 KLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
             K   P   S+  L+ WLC +HN IN +LGKP+FDCSR+DERWRDGW DGSCD
Sbjct:   140 KTNRPDAGSRHKLSQWLCRLHNDINIRLGKPEFDCSRVDERWRDGWKDGSCD 191

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IMP;IDA

GO:0016971 "flavin-linked sulfhydryl oxidase activity" evidence=IMP;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031012 "extracellular matrix" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0001889 "liver development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GXX0	ERV1_ARATH	1, ., 8, ., 3, ., 2	0.4126	0.9918	0.6335	yes	N/A
P55789	ALR_HUMAN	1, ., 8, ., 3, ., 2	0.5344	0.9508	0.5658	yes	N/A
P56213	ALR_MOUSE	1, ., 8, ., 3, ., 2	0.5431	0.9508	0.5858	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.3.2	0.824
3rd Layer	1.8.3	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	122
COG5054	181	COG5054, ERV1, Mitochondrial sulfhydryl oxidase in	2e-37
pfam04777	95	pfam04777, Evr1_Alr, Erv1 / Alr family	4e-35

>gnl|CDD|227387 COG5054, ERV1, Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]

 Score =  124 bits (313), Expect = 2e-37
 Identities = 46/104 (44%), Positives = 65/104 (62%)

Query: 15  DKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRP 74
           D ++LG  +W LLHT+AA YP +PT  +  ++++F  L    YPC  C++ F  LL + P
Sbjct: 78  DVEELGRSSWTLLHTVAANYPARPTPQQRDDLRSFLFLFSITYPCGECSKHFQKLLDVYP 137

Query: 75  PATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDD 118
           P  SS+ A   W C VHN +N+KLGKP+FDC   +ER+  G D 
Sbjct: 138 PQVSSREAATTWACEVHNKVNEKLGKPKFDCDTWNERYDCGCDT 181

Length = 181

>gnl|CDD|218261 pfam04777, Evr1_Alr, Erv1 / Alr family

 Score =  115 bits (291), Expect = 4e-35
 Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 23  TWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRA 82
            W LLHT+AA YP+ PT +E+  +K+F      FYPCE CA  F  +L   PP  SS+  
Sbjct: 3   LWTLLHTLAARYPDNPTPEEKEVLKSFLGSFSHFYPCEECAEHFQKILAKNPPQVSSRDD 62

Query: 83  LAGWLCWVHNHINQKLGKPQF-DCSRLDERWRD 114
           L+ WLC  HN +N +LGKP F    ++ ER+ D
Sbjct: 63  LSLWLCEAHNEVNARLGKPLFCSDPKVKERYPD 95

Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins. Erv1p of Saccharomyces cerevisiae mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian orthologue of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane an d it thought to operate downstream of the mitochondrial ABC transporter. Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
KOG3355|consensus	177		100.0
COG5054	181	ERV1 Mitochondrial sulfhydryl oxidase involved in	100.0
PF04777	95	Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 B	100.0
KOG1731|consensus	606		99.78
PHA03005	96	sulfhydryl oxidase; Provisional	99.22
PF04805	70	Pox_E10: E10-like protein conserved region; InterP	96.12

>KOG3355|consensus

Probab=100.00  E-value=5.6e-49  Score=288.70  Aligned_cols=114  Identities=56%  Similarity=1.207  Sum_probs=112.7

Q ss_pred             CCCCCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHH
Q psy13140          9 REDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLC   88 (122)
Q Consensus         9 ~~~~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~   88 (122)
                      ...||++++++|||+|+|||||||+||+.||.+|++.|+.||.+|..+|||.+|++||+++++++|++|+||+++.+|+|
T Consensus        63 ~~~~~~~~eeLGRstWtllHT~aA~yP~~PT~eqk~~~~sFi~~~s~~yPC~eCa~dl~K~l~~nppq~~SRe~~~~W~C  142 (177)
T KOG3355|consen   63 RKGDPPDKEELGRSTWTLLHTLAANYPDRPTPEQKDDMRSFIHLFSKFYPCGECAKDLRKILRKNPPQTSSREAFTQWLC  142 (177)
T ss_pred             hcCCCchHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHhhhCCCCCCccchHhhhcCCCCCCCCC
Q psy13140         89 WVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD  122 (122)
Q Consensus        89 ~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~~~~~  122 (122)
                      .+||.||++||||.|||..|.+||++||.||+||
T Consensus       143 ~vHN~VNekLgKp~fdC~~v~erw~~g~~~~~~d  176 (177)
T KOG3355|consen  143 HVHNKVNEKLGKPKFDCRTVDERWRDGWKDGSCD  176 (177)
T ss_pred             HHHHHHHHHcCCCCCchhHHHHHHhchhhhcCCC
Confidence            9999999999999999999999999999999997

>COG5054 ERV1 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-43  Score=258.40  Aligned_cols=110  Identities=42%  Similarity=0.894  Sum_probs=107.9

Q ss_pred             CCCCCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHH
Q psy13140          9 REDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLC   88 (122)
Q Consensus         9 ~~~~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~   88 (122)
                      ++..|++++++|||+|+|||||+|+||..||.+||..|+.||.+|..+|||.+|+.||+++++.+||+|+||+++..|+|
T Consensus        72 ~k~d~~~~~elGRssWtllHtv~A~yP~~PT~~qr~~l~sFl~~~s~~yPCgeCs~~f~K~l~~~ppqv~SRea~~~W~C  151 (181)
T COG5054          72 TKHDNPDVEELGRSSWTLLHTVAANYPARPTPQQRDDLRSFLFLFSITYPCGECSKHFQKLLDVYPPQVSSREAATTWAC  151 (181)
T ss_pred             cccCchHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhheeecHHHHHHHHHHHhhCCCCcccHHHHHHHHH
Confidence            68889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHhhhCCCCCCccchHhhhcCCCCC
Q psy13140         89 WVHNHINQKLGKPQFDCSRLDERWRDGWDD  118 (122)
Q Consensus        89 ~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~  118 (122)
                      ++||.||+|||||.|||..+.|||.+||++
T Consensus       152 evHN~VNekL~Kp~~dC~~~~e~~~~G~~~  181 (181)
T COG5054         152 EVHNKVNEKLGKPKFDCDTWNERYDCGCDT  181 (181)
T ss_pred             HHHHHHHHHhCCCCcccchhHHHhhccCCC
Confidence            999999999999999999999999999975

>PF04777 Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins

Probab=100.00  E-value=3.1e-36  Score=203.37  Aligned_cols=94  Identities=46%  Similarity=0.945  Sum_probs=90.1

Q ss_pred             hhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhHHHhhhCC
Q psy13140         21 YQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGK  100 (122)
Q Consensus        21 ~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~rLgK  100 (122)
                      +|+|++||++|++||++|+..+++.+..|+.+|..+|||++||.||.++++++|++|+||+++++|||++||.||+||||
T Consensus         1 c~~W~llH~~a~~~p~~p~~~~~~~~~~~~~~~~~~~pC~~C~~hf~~~~~~~~~~v~sr~~l~~Wl~~~HN~VN~rL~k   80 (95)
T PF04777_consen    1 CGLWTLLHTLAAYYPENPTEEEKQVMEAFFRSFPHFFPCEECRNHFSKYIKKNPPQVSSREDLVLWLWRAHNKVNERLGK   80 (95)
T ss_dssp             HHHHHHHHHHHHTSHSSHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSGGGGSSHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CchHHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CccchHhhhcC
Q psy13140        101 PQF-DCSRLDERWRD  114 (122)
Q Consensus       101 p~~-~c~~~~~rw~~  114 (122)
                      |++ ++.++.++|.+
T Consensus        81 ~~~~~~~~~~~~~~~   95 (95)
T PF04777_consen   81 PIFCDDPKFKEQWPT   95 (95)
T ss_dssp             STTTSGTTHHHHHT-
T ss_pred             CCCCCcHHHHhHcCC
Confidence            996 88899999963

Erv1p of Saccharomyces cerevisiae (Baker's yeast) mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian ortholog of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane and it is thought to operate downstream of the mitochondrial ABC transporter [].; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process; PDB: 3MBG_C 3U2L_A 3U2M_A 3QD9_D 3QCP_A 3O55_A 2HJ3_B 3GWN_A 3T58_D 3T59_B ....

>KOG1731|consensus

Probab=99.78  E-value=3.5e-19  Score=150.79  Aligned_cols=93  Identities=17%  Similarity=0.355  Sum_probs=71.0

Q ss_pred             ccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhh-hhcCChhhHHHHHHHHHhC-CCCCCCHHHHHHHHHHHhhH
Q psy13140         16 KDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLG-KFYPCESCARDFSSLLKLR-PPATSSQRALAGWLCWVHNH   93 (122)
Q Consensus        16 ~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~-~~~PC~~C~~hf~~~~~~~-p~~v~sr~~l~~Wl~~~HN~   93 (122)
                      -..+.++||+|||++||+.-..+...+-..+..-++.|. +||.|.+||.||.+|..+. ...|++++|.++|||++||.
T Consensus       405 ~RGftCgLWTLFH~lTV~Aa~~~~~~~~~~~l~~l~~~vk~FFgC~dC~~HF~~Ma~~~~~~~V~~ped~vLWLW~aHN~  484 (606)
T KOG1731|consen  405 LRGFTCGLWTLFHALTVEAAKQEVHFAFTPILDVLHGFVKNFFGCTDCREHFQKMATRRKLHRVRRPEDVVLWLWSAHNE  484 (606)
T ss_pred             cCCcchHHHHHHHHhhhhhcccccccchhccchhhHHHHHHccCchHHHHHHHHHHHhhcccccCChhhhhhHHHHHhhH
Confidence            346778999999999999665544443333333333343 6899999999999999775 47899999999999999999


Q ss_pred             HHhhhCC-----CCCCccch
Q psy13140         94 INQKLGK-----PQFDCSRL  108 (122)
Q Consensus        94 VN~rLgK-----p~~~c~~~  108 (122)
                      ||+||.+     |+|+--.+
T Consensus       485 VN~RLaGd~TeDPkFPK~QF  504 (606)
T KOG1731|consen  485 VNARLAGDSTEDPKFPKVQF  504 (606)
T ss_pred             HHHHhccCCCCCCCCCcccC
Confidence            9999953     56665443

>PHA03005 sulfhydryl oxidase; Provisional

Probab=99.22  E-value=3.7e-11  Score=80.88  Aligned_cols=77  Identities=12%  Similarity=0.223  Sum_probs=61.5

Q ss_pred             CccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHH-HHhhH
Q psy13140         15 DKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLC-WVHNH   93 (122)
Q Consensus        15 ~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~-~~HN~   93 (122)
                      +|+.||||.|+++|.++.+|..+++   .+..+..+.++...+||.+|+.|..+.+.++-...++.-..+.++. .++|.
T Consensus         2 dPk~WGra~W~vIFivi~k~~~~~~---iE~cK~~lytI~~tLPC~~Cr~HA~~ai~knnimSs~diNyi~~FfI~l~Nn   78 (96)
T PHA03005          2 NPKYWGRAIWTVIFIVISKAKLDGN---IEACKRKLYTICSTLPCPACRRHAKEAIEKNNIMSSNDLNYIYFFFISLFNN   78 (96)
T ss_pred             CcchhhhhHHHHHHHHHHhccCCCc---HHHHHHHHHHhhhcCCCHHHHHHHHHHHhhcCccccCCccchhHHHHHHHHH
Confidence            6889999999999999999998884   4466777788889999999999999999987765444444454444 66665


Q ss_pred             H
Q psy13140         94 I   94 (122)
Q Consensus        94 V   94 (122)
                      .
T Consensus        79 l   79 (96)
T PHA03005         79 L   79 (96)
T ss_pred             h
Confidence            4

>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses

Probab=96.12  E-value=0.015  Score=37.25  Aligned_cols=49  Identities=12%  Similarity=0.194  Sum_probs=33.8

Q ss_pred             HHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHH-HHhhH
Q psy13140         45 EMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLC-WVHNH   93 (122)
Q Consensus        45 ~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~-~~HN~   93 (122)
                      ..+.-+..+...+||+.||.|..+.+.++....++--..+.++. .++|.
T Consensus         4 ~cKr~ly~I~~tLPC~~Cr~HA~~ai~kNNiMSs~DiNyIy~FFI~lfNn   53 (70)
T PF04805_consen    4 KCKRKLYTICSTLPCPECRIHAKEAIQKNNIMSSNDINYIYFFFISLFNN   53 (70)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCccccCCccchHHHHHHHHHH
Confidence            34444566678999999999999999988765444334444444 66664

; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
3r7c_A	139	The Structure Of A Hexahestidine-Tagged Form Of Aug		7e-38
1oqc_A	125	The Crystal Structure Of Augmenter Of Liver Regener		8e-38
3mbg_A	139	Crystal Structure Of Human Augmenter Of Liver Regen		4e-37
3o55_A	125	Crystal Structure Of Human Fad-Linked Augmenter Of		4e-37
3tk0_A	126	Mutation Of Sfalr Length = 126		3e-36
3u2l_A	115	Crystal Structure Of Human Alr Mutant C142s Length		9e-36
3u2m_A	115	Crystal Structure Of Human Alr Mutant C142145S Leng		6e-35
3u5s_A	126	Selenium Substituted Human Augmenter Of Liver Regen		1e-30
4e0h_A	106	Crystal Structure Of Fad Binding Domain Of Erv1 Fro		5e-26
4e0i_A	189	Crystal Structure Of The C30s/c133s Mutant Of Erv1		2e-25
2hj3_A	125	Structure Of The Arabidopsis Thaliana Erv1 Thiol Ox		5e-24
1jr8_A	117	Crystal Structure Of Erv2p Length = 117		5e-17
3gwn_A	114	Crystal Structure Of The Fad Binding Domain From Mi		7e-08
3td7_A	295	Crysal Structure Of The Mimivirus Sulfhydryl Oxidas		8e-08

>pdb|3R7C|A Chain A, The Structure Of A Hexahestidine-Tagged Form Of Augmenter Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6) Cluster That Aids In Crystal Packing Length = 139

Iteration: 1
 Score =  151 bits (382), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 84/116 (72%)
Query: 7   RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
           + REDCP D+++LG  TW  LHT+AAYYP+ PT +++++M  F  +  KFYPCE CA D 
Sbjct: 24  KFREDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDI 83
Query: 67  SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
              +    P TS++ + + WLC +HN +N+KLGKP FDCSR+DERWRDGW DGSCD
Sbjct: 84  RKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSCD 139

>pdb|1OQC|A Chain A, The Crystal Structure Of Augmenter Of Liver Regeneration: A Mammalian Fad Dependent Sulfhydryl Oxidase Length = 125

Iteration: 1
 Score =  151 bits (382), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 84/116 (72%)
Query: 7   RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
           + REDCP D+++LG  TW  LHT+AAYYP+ PT +++++M  F  +  KFYPCE CA D 
Sbjct: 10  KFREDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDI 69
Query: 67  SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
              +    P TS++ + + WLC +HN +N+KLGKP FDCSR+DERWRDGW DGSCD
Sbjct: 70  RKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSCD 125

>pdb|3MBG|A Chain A, Crystal Structure Of Human Augmenter Of Liver Regeneration (Alr) Length = 139

Iteration: 1
 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 83/116 (71%)
Query: 7   RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
           + REDCP D+++LG  +W +LHT+AAYYP+ PT +++++M  F  L  KFYPCE CA D 
Sbjct: 24  KFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDL 83
Query: 67  SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
              L    P T ++ A   WLC +HN +N+KLGKP FDCS++DERWRDGW DGSCD
Sbjct: 84  RKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 139

>pdb|3O55|A Chain A, Crystal Structure Of Human Fad-Linked Augmenter Of Liver Regeneration (Alr) Length = 125

Iteration: 1
 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 83/116 (71%)
Query: 7   RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
           + REDCP D+++LG  +W +LHT+AAYYP+ PT +++++M  F  L  KFYPCE CA D 
Sbjct: 10  KFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDL 69
Query: 67  SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
              L    P T ++ A   WLC +HN +N+KLGKP FDCS++DERWRDGW DGSCD
Sbjct: 70  RKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 125

>pdb|3TK0|A Chain A, Mutation Of Sfalr Length = 126

Iteration: 1
 Score =  146 bits (368), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 82/116 (70%)
Query: 7   RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
           + REDCP D+++LG  +W +LHT+AAYYP+ PT +++++M  F  L  KFYP E CA D 
Sbjct: 11  KFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDL 70
Query: 67  SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
              L    P T ++ A   WLC +HN +N+KLGKP FDCS++DERWRDGW DGSCD
Sbjct: 71  RKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 126

>pdb|3U2L|A Chain A, Crystal Structure Of Human Alr Mutant C142s Length = 115

Iteration: 1
 Score =  144 bits (364), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 81/115 (70%)
Query: 8   IREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFS 67
            REDCP D+++LG  +W +LHT+AAYYP+ PT +++++M  F  L  KFYP E CA D  
Sbjct: 1   FREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDLR 60
Query: 68  SLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
             L    P T ++ A   WLC +HN +N+KLGKP FDCS++DERWRDGW DGSCD
Sbjct: 61  KRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 115

>pdb|3U2M|A Chain A, Crystal Structure Of Human Alr Mutant C142145S Length = 115

Iteration: 1
 Score =  142 bits (357), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 80/115 (69%)
Query: 8   IREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFS 67
            REDCP D+++LG  +W +LHT+AAYYP+ PT +++++M  F  L  KFYP E  A D  
Sbjct: 1   FREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEESAEDLR 60
Query: 68  SLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
             L    P T ++ A   WLC +HN +N+KLGKP FDCS++DERWRDGW DGSCD
Sbjct: 61  KRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 115

>pdb|3U5S|A Chain A, Selenium Substituted Human Augmenter Of Liver Regeneration Length = 126

Iteration: 1
 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 56/116 (48%), Positives = 76/116 (65%)
Query: 7   RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDF 66
           + RED P D+++LG  +W +LHT+AAYYP+ PT +++++   F  L  KFYP E  A D 
Sbjct: 11  KFREDXPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDXAQFIHLFSKFYPXEEXAEDL 70
Query: 67  SSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD 122
              L    P T ++ A   WL  +HN +N+KLGKP FD S++DERWRDGW DGS D
Sbjct: 71  RKRLARNHPDTRTRAAFTQWLXHLHNEVNRKLGKPDFDXSKVDERWRDGWKDGSXD 126

>pdb|4E0H|A Chain A, Crystal Structure Of Fad Binding Domain Of Erv1 From Saccharomyces Cerevisiae Length = 106

Iteration: 1
 Score =  112 bits (280), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 68/105 (64%)
Query: 14  LDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLR 73
           +D +QLG  +W LLH++AA YP +PT  ++ EMK F  +    YPC  CA+DF   ++  
Sbjct: 2   MDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIREN 61
Query: 74  PPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDD 118
            P   S+  L  W+C  HN +N+KL KP+FDC+  ++RW+DGWD+
Sbjct: 62  APQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE 106

>pdb|4E0I|A Chain A, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From Saccharomyces Cerevisiae Length = 189

Iteration: 1
 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 69/110 (62%)
Query: 9   REDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSS 68
           R+  P D +QLG  +W LLH++AA YP +PT  ++ EMK F  +    YPC   A+DF  
Sbjct: 80  RKVDPPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWSAKDFEK 139
Query: 69  LLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDD 118
            ++   P   S+  L  W+C  HN +N+KL KP+FDC+  ++RW+DGWD+
Sbjct: 140 YIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE 189

>pdb|2HJ3|A Chain A, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase Length = 125

Iteration: 1
 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 61/100 (61%)
Query: 13  PLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKL 72
           P+ K+ LG  TW  LHT+AA YPEKPT  +++++K    +L + YPC  CA  F  +L+ 
Sbjct: 7   PVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEILRS 66
Query: 73  RPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERW 112
            P    SQ   + WLC VHN +N+ LGK  F C R+D RW
Sbjct: 67  NPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARW 106

>pdb|1JR8|A Chain A, Crystal Structure Of Erv2p Length = 117

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 59/103 (57%)
Query: 16  KDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPP 75
           K ++G  +W   HT+ A +P++PT +E  ++ TF  L  + YPC  C+  F  L++  P 
Sbjct: 8   KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPV 67
Query: 76  ATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDD 118
            TSS+ A A W C +HN +N+ L K  +DC+ + E +  G  D
Sbjct: 68  QTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSD 110

>pdb|3GWN|A Chain A, Crystal Structure Of The Fad Binding Domain From Mimivirus Sulfhydryl Oxidase R596 Length = 114

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 20 GYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSS 79
          G   W   H +   YP  PT+D++R  K +F+ LG   PC  C   +   +     A ++
Sbjct: 10 GTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTN 69
Query: 80 Q-----RALAGWLCWVHNHINQKL 98
          +       L  W   VHN +N KL
Sbjct: 70 EVLRNRHTLTKWFYDVHNAVNNKL 93

>pdb|3TD7|A Chain A, Crysal Structure Of The Mimivirus Sulfhydryl Oxidase R596 Length = 295

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 20  GYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSS 79
           G   W   H +   YP  PT+D++R  K +F+ LG   PC  C   +   +     A ++
Sbjct: 44  GTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTN 103
Query: 80  Q-----RALAGWLCWVHNHINQKL 98
           +       L  W   VHN +N KL
Sbjct: 104 EVLRNRHTLTKWFYDVHNAVNNKL 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
3mbg_A	139	FAD-linked sulfhydryl oxidase ALR; flavin, flavopr	1e-44
1oqc_A	125	ALR, augmenter of liver regeneration; sulfhydryl o	1e-43
1jr8_A	117	ERV2 protein, mitochondrial; FAD, sulfhydryl oxida	7e-39
2hj3_A	125	Sulfhydryl oxidase ERV1P; four-helix bundle, flavi	7e-36
3gwl_A	106	P14, FAD-linked sulfhydryl oxidase; homodimer, fiv	7e-29
3gwn_A	114	Probable FAD-linked sulfhydryl oxidase R596; five	6e-25
3llk_A	261	Sulfhydryl oxidase 1; disulfide, flavin adenine di	2e-21
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	3e-05

>3mbg_A FAD-linked sulfhydryl oxidase ALR; flavin, flavoprotein, GFER; HET: FAD; 1.85A {Homo sapiens} PDB: 3r7c_A* Length = 139

 Score =  141 bits (355), Expect = 1e-44
 Identities = 63/121 (52%), Positives = 83/121 (68%)

Query: 2   SSSLDRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCES 61
                + REDCP D+++LG  +W +LHT+AAYYP+ PT +++++M  F  L  KFYPCE 
Sbjct: 19  QKRDTKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEE 78

Query: 62  CARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSC 121
           CA D    L    P T ++ A   WLC +HN +N+KLGKP FDCS++DERWRDGW DGSC
Sbjct: 79  CAEDLRKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSC 138

Query: 122 D 122
           D
Sbjct: 139 D 139

>1oqc_A ALR, augmenter of liver regeneration; sulfhydryl oxidase, helix-turn-HELI oxidoreductase; HET: FAD; 1.80A {Rattus norvegicus} SCOP: a.24.15.1 PDB: 3o55_A* Length = 125

 Score =  137 bits (347), Expect = 1e-43
 Identities = 63/122 (51%), Positives = 84/122 (68%)

Query: 1   MSSSLDRIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCE 60
                 + REDCP D+++LG  TW  LHT+AAYYP+ PT +++++M  F  +  KFYPCE
Sbjct: 4   QQKRDIKFREDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCE 63

Query: 61  SCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGS 120
            CA D    +    P TS++ + + WLC +HN +N+KLGKP FDCSR+DERWRDGW DGS
Sbjct: 64  ECAEDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 123

Query: 121 CD 122
           CD
Sbjct: 124 CD 125

>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A* Length = 117

 Score =  125 bits (316), Expect = 7e-39
 Identities = 37/109 (33%), Positives = 59/109 (54%)

Query: 13  PLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKL 72
              K ++G  +W   HT+ A +P++PT +E  ++ TF  L  + YPC  C+  F  L++ 
Sbjct: 5   DKVKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEK 64

Query: 73  RPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSC 121
            P  TSS+ A A W C +HN +N+ L K  +DC+ + E +  G  D   
Sbjct: 65  YPVQTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSDSDG 113

>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} Length = 125

 Score =  118 bits (296), Expect = 7e-36
 Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 1/113 (0%)

Query: 11  DCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLL 70
             P+ K+ LG  TW  LHT+AA YPEKPT  +++++K    +L + YPC  CA  F  +L
Sbjct: 5   TGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEIL 64

Query: 71  KLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERW-RDGWDDGSCD 122
           +  P    SQ   + WLC VHN +N+ LGK  F C R+D RW +   +  SCD
Sbjct: 65  RSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARWGKLECEQKSCD 117

>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V} Length = 106

 Score =  100 bits (249), Expect = 7e-29
 Identities = 21/96 (21%), Positives = 36/96 (37%)

Query: 20  GYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSS 79
           G + W  LH  A ++ + P+  E+ E   + +   +  PC  C     S L   P   ++
Sbjct: 8   GPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNN 67

Query: 80  QRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDG 115
                 W    HN++N +L K     S     +   
Sbjct: 68  SEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQS 103

>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus} Length = 114

 Score = 90.2 bits (223), Expect = 6e-25
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 14  LDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLK-- 71
           L     G   W   H +   YP  PT+D++R  K +F+ LG   PC  C   +   +   
Sbjct: 4   LITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTG 63

Query: 72  ---LRPPATSSQRALAGWLCWVHNHINQKLGKP-QFDCSRLDERWR 113
              L      ++  L  W   VHN +N KL          +  ++ 
Sbjct: 64  KTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVVNKYE 109

>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A* Length = 261

 Score = 84.7 bits (209), Expect = 2e-21
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 7/97 (7%)

Query: 23  TWGLLHTIAAYYPEKPTADEERE------MKTFFMLLGKFYPCESCARDFSSLLKLRPPA 76
            W L H +      +     +        +      +  F+ C  CA  F  +       
Sbjct: 122 LWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHR 181

Query: 77  TSSQRALAGWLCWVHNHINQKL-GKPQFDCSRLDERW 112
             S  A   WL   HN +N +L G P  D      +W
Sbjct: 182 VGSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQW 218

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 21/117 (17%), Positives = 29/117 (24%), Gaps = 23/117 (19%)

Query: 24  WGLLHTIAAYYPEKPTADEEREMKTFFMLLG------KFYPCESCARDFSSLLKLRPPAT 77
           W L H +         A  +       +L         F+ C   A  F  +        
Sbjct: 380 WVLFHFLTVQANRYSEAHPQEPADGQEVLQAMRSYVQFFFGCRDSADHFEQMAAASMHQV 439

Query: 78  SSQRALAGWLCWVHNHINQKLG----------KPQF-------DCSRLDERWRDGWD 117
            S      WL   HN +N +L           K Q+        C          WD
Sbjct: 440 RSPSNAILWLWTSHNRVNARLSGALSEDPHFPKVQWPPRELCSACHNELNGQVPLWD 496

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
3u5s_A	126	FAD-linked sulfhydryl oxidase ALR; flavin, liver,	100.0
2hj3_A	125	Sulfhydryl oxidase ERV1P; four-helix bundle, flavi	100.0
1jr8_A	117	ERV2 protein, mitochondrial; FAD, sulfhydryl oxida	100.0
4e0h_A	106	Mitochondrial FAD-linked sulfhydryl oxidase ERV1;	100.0
4e0i_A	189	Mitochondrial FAD-linked sulfhydryl oxidase ERV1;	100.0
3gwl_A	106	P14, FAD-linked sulfhydryl oxidase; homodimer, fiv	100.0
3gwn_A	114	Probable FAD-linked sulfhydryl oxidase R596; five	100.0
3td7_A	295	FAD-linked sulfhydryl oxidase R596; four helix-bun	99.98
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.93
3llk_A	261	Sulfhydryl oxidase 1; disulfide, flavin adenine di	99.91
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.89

>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*

Probab=100.00  E-value=4.4e-53  Score=299.28  Aligned_cols=115  Identities=50%  Similarity=1.015  Sum_probs=113.2

Q ss_pred             CCCCCCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy13140          8 IREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWL   87 (122)
Q Consensus         8 ~~~~~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl   87 (122)
                      .+++||+|+++||||+|++|||||++||++|+.+++..|+.||.+|..+|||.+|+.||.++++++|++++||++|++||
T Consensus        12 ~~~~~P~d~~elG~atW~~LHtia~~yP~~Pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~pp~l~SR~~l~~Wl   91 (126)
T 3u5s_A           12 FREDXPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPXEEXAEDLRKRLARNHPDTRTRAAFTQWL   91 (126)
T ss_dssp             CCSSSCCCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHH
T ss_pred             ccCCCCCCHHHcCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHCccccCCHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHhhhCCCCCCccchHhhhcCCCCCCCCC
Q psy13140         88 CWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSCD  122 (122)
Q Consensus        88 ~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~~~~~  122 (122)
                      |.+||.||++||||+|||+.|.+||++||.||+||
T Consensus        92 ~~~HN~VN~rLgKp~fd~~~~~ery~~g~~dg~~d  126 (126)
T 3u5s_A           92 XHLHNEVNRKLGKPDFDXSKVDERWRDGWKDGSXD  126 (126)
T ss_dssp             HHHHHHHHHHTTCCCCCGGGHHHHHTTCCTTSTTC
T ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHccCCCCCCCC
Confidence            99999999999999999999999999999999998

>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=6.8e-52  Score=292.85  Aligned_cols=115  Identities=42%  Similarity=0.882  Sum_probs=100.4

Q ss_pred             CCCCCCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy13140          8 IREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWL   87 (122)
Q Consensus         8 ~~~~~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl   87 (122)
                      +|.+||+++++||+++|+||||||++||++|+.++++++..||++|..||||.+||.||.++++++|++|+||+++++||
T Consensus         2 ~~~~~p~~~~~lG~slW~llHtlaa~yp~~pt~~~~~~~~~f~~~~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lWL   81 (125)
T 2hj3_A            2 SHMTGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWL   81 (125)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHH
T ss_pred             CCCCCCCCccccCcchhHHHHHHHhhCcCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHhhhCCCCCCccchHhhhcCCCCC-CCCC
Q psy13140         88 CWVHNHINQKLGKPQFDCSRLDERWRDGWDD-GSCD  122 (122)
Q Consensus        88 ~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~-~~~~  122 (122)
                      |++||.||+|||||+|||+.|.+||++||.| |+||
T Consensus        82 w~~HN~VN~rL~Kp~f~c~~~~~rw~~g~~d~~~c~  117 (125)
T 2hj3_A           82 CHVHNTVNRSLGKLVFPCERVDARWGKLECEQKSCD  117 (125)
T ss_dssp             HHHHHHHHHHTTCCCCCTTSHHHHCC----------
T ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHhccCCCCCCCcC
Confidence            9999999999999999999999999999999 9997

>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*

Probab=100.00  E-value=4.4e-49  Score=275.67  Aligned_cols=110  Identities=34%  Similarity=0.685  Sum_probs=104.3

Q ss_pred             CCCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy13140         11 DCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWV   90 (122)
Q Consensus        11 ~~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~   90 (122)
                      .||+++++||+|+|+||||||++||++|+.++++.+..|+.+|.+||||.+|+.||.++++++|++|+||+++++|||++
T Consensus         3 ~~~~~~~~lG~s~W~llHtlaa~~p~~pt~~~~~~l~~f~~~~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lWLw~~   82 (117)
T 1jr8_A            3 GDDKVKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPVQTSSRTAAAMWGCHI   82 (117)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHH
T ss_pred             CCCcchhhccccHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhhCCCCCCccchHhhhcCCCCCCC
Q psy13140         91 HNHINQKLGKPQFDCSRLDERWRDGWDDGS  120 (122)
Q Consensus        91 HN~VN~rLgKp~~~c~~~~~rw~~g~~~~~  120 (122)
                      ||.||+|||||+|||+.|.|||++||+|+.
T Consensus        83 HN~VN~rL~kp~f~c~~~~er~~~g~~~~~  112 (117)
T 1jr8_A           83 HNKVNEYLKKDIYDCATILEDYDCGCSDSD  112 (117)
T ss_dssp             HHHHHHHTTCCCCCCTTHHHHTCCCC----
T ss_pred             HHHHHHHhCCCCcCHHHHHHHHhcCCCCcc
Confidence            999999999999999999999999998864

>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-47  Score=261.48  Aligned_cols=105  Identities=44%  Similarity=1.022  Sum_probs=102.7

Q ss_pred             CCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhH
Q psy13140         14 LDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNH   93 (122)
Q Consensus        14 ~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~   93 (122)
                      +|+++|||++|++|||||++||++|+.+++..++.||.+|..+|||++||.||.++++++|+.++||+++++|||.+||.
T Consensus         2 ~d~e~lGp~~W~~lHtia~~yP~~pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~p~~~~sr~~l~~Wl~~~HN~   81 (106)
T 4e0h_A            2 MDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIRENAPQVESREELGRWMCEAHNK   81 (106)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHH
T ss_pred             CCHHHccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCCCccchHhhhcCCCCC
Q psy13140         94 INQKLGKPQFDCSRLDERWRDGWDD  118 (122)
Q Consensus        94 VN~rLgKp~~~c~~~~~rw~~g~~~  118 (122)
                      ||+|||||+|||+.+.+||++||+|
T Consensus        82 VN~rLgKp~f~~~~~~~ry~~g~~d  106 (106)
T 4e0h_A           82 VNKKLRKPKFDCNFWEKRWKDGWDE  106 (106)
T ss_dssp             HHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred             HHHHcCCCCCCHHHHHHHHHhcCCC
Confidence            9999999999999999999999987

>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-46  Score=281.70  Aligned_cols=112  Identities=42%  Similarity=0.929  Sum_probs=108.9

Q ss_pred             CCCCCCCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHH
Q psy13140          7 RIREDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGW   86 (122)
Q Consensus         7 ~~~~~~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~W   86 (122)
                      +.+++||+|+++|||++|++|||||++||++|+.++++.|+.||.+|..+|||++|+.||.++++.+|+.++||++|++|
T Consensus        78 ~~~~~~P~d~~elGp~~W~~LHTiA~~YP~~Pt~~~k~~~~~Fi~~l~~~lPC~~C~~hf~~~lk~~pp~l~SR~~l~~W  157 (189)
T 4e0i_A           78 TYRKVDPPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWSAKDFEKYIRENAPQVESREELGRW  157 (189)
T ss_dssp             SCBCCCCCCHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHHH
T ss_pred             CCcCCCCCChhhcCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHCccccCCHHHHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHhhhCCCCCCccchHhhhcCCCCC
Q psy13140         87 LCWVHNHINQKLGKPQFDCSRLDERWRDGWDD  118 (122)
Q Consensus        87 l~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~  118 (122)
                      ||++||.||++||||+|||+.|.+||++||+|
T Consensus       158 l~~~HN~VN~rLgKp~fdc~~~~erw~~G~~d  189 (189)
T 4e0i_A          158 MCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE  189 (189)
T ss_dssp             HHHHHHHHHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999987

>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}

Probab=100.00  E-value=1.3e-43  Score=244.15  Aligned_cols=98  Identities=21%  Similarity=0.412  Sum_probs=95.4

Q ss_pred             cccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhHHHh
Q psy13140         17 DQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQ   96 (122)
Q Consensus        17 ~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~   96 (122)
                      .+||||+|++|||||++||++|+.+++++++.||++|..+|||.+|+.||+++++++|+++.+++++++|||++||.||+
T Consensus         5 ~~~Gra~W~llHt~aa~yP~~Pt~~~~~~~~~~i~~f~~~yPC~~Ca~hf~~~~~~~p~~~~s~~~~~lWlc~~HN~VN~   84 (106)
T 3gwl_A            5 LHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNN   84 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHhHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCCccchHhhhcC
Q psy13140         97 KLGKPQFDCSRLDERWRD  114 (122)
Q Consensus        97 rLgKp~~~c~~~~~rw~~  114 (122)
                      |||||+|||++|.+||+-
T Consensus        85 rLgKp~fdc~~~~e~y~~  102 (106)
T 3gwl_A           85 RLNKKIISWSEYKNIYEQ  102 (106)
T ss_dssp             HTTCCCCCHHHHHHHHTT
T ss_pred             hhCCCCCCHHHHHHHHHH
Confidence            999999999999999974

>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus}

Probab=100.00  E-value=1.5e-43  Score=246.55  Aligned_cols=103  Identities=24%  Similarity=0.529  Sum_probs=99.0

Q ss_pred             CCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCC----CC-CCCHHHHHHH
Q psy13140         12 CPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRP----PA-TSSQRALAGW   86 (122)
Q Consensus        12 ~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p----~~-v~sr~~l~~W   86 (122)
                      -++++++||||+|++|||||++||++|+.+++++|+.||++|.++|||.+|+.||.++++++|    ++ |+||+++++|
T Consensus         2 ~g~~p~~~Grs~W~llHt~aa~~p~~pt~~~~~~~~~fi~~~~~~yPC~~Ca~hf~~~~~~~p~~~~~~~v~sr~~~~~W   81 (114)
T 3gwn_A            2 NGLITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKW   81 (114)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHTTSGGGCCCGGGGSSHHHHHHH
T ss_pred             CCCchhhhcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCcCCccccCCHHHHHHH
Confidence            368999999999999999999999999999999999999999999999999999999999999    88 9999999999


Q ss_pred             HHHHhhHHHhhhCCCC-CCccchHhhhcC
Q psy13140         87 LCWVHNHINQKLGKPQ-FDCSRLDERWRD  114 (122)
Q Consensus        87 l~~~HN~VN~rLgKp~-~~c~~~~~rw~~  114 (122)
                      ||++||.||+|||||+ ++|++|.+||+.
T Consensus        82 lc~~HN~VN~rLgKp~~~~~~~v~ery~~  110 (114)
T 3gwn_A           82 FYDVHNAVNNKLEVDYGLSYEDVVNKYES  110 (114)
T ss_dssp             HHHHHHHHHHHTTCCCCCCHHHHHHHHHT
T ss_pred             HHHHHhHHHHHhCCCCcCCHHHHHHHHHH
Confidence            9999999999999996 789999999974

>3td7_A FAD-linked sulfhydryl oxidase R596; four helix-bundle, orfan domain, oxidoreductase; HET: FAD; 2.21A {Acanthamoeba polyphaga mimivirus}

Probab=99.98  E-value=1.1e-32  Score=216.36  Aligned_cols=103  Identities=24%  Similarity=0.530  Sum_probs=93.9

Q ss_pred             CCCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCC-----CCCCCHHHHHH
Q psy13140         11 DCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRP-----PATSSQRALAG   85 (122)
Q Consensus        11 ~~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p-----~~v~sr~~l~~   85 (122)
                      ......+.|||++|++|||+|++||++|+.++++.++.||.+|..+|||++||.||.++++++|     +.++||++|+.
T Consensus        35 ~dGM~TkVWGPstW~fLHTIAa~YPenPT~~dKk~y~~FI~nL~~vLPC~~Cr~HF~k~Lkk~Pv~~~~p~L~SRdsLsk  114 (295)
T 3td7_A           35 HNGLITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTK  114 (295)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHTTSGGGCCCTTGGGSHHHHHH
T ss_pred             CCCCccCcCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccccccccccCCHHHHHH
Confidence            3445677899999999999999999999999999999999999999999999999999999887     34789999999


Q ss_pred             HHHHHhhHHHhhhCCCC-CCccchHhhhc
Q psy13140         86 WLCWVHNHINQKLGKPQ-FDCSRLDERWR  113 (122)
Q Consensus        86 Wl~~~HN~VN~rLgKp~-~~c~~~~~rw~  113 (122)
                      |+|.+||.||++||||. +.++++.++|.
T Consensus       115 WL~~iHN~VNkrLGKP~~lSYedv~kkYE  143 (295)
T 3td7_A          115 WFYDVHNAVNNKLEVDYGLSYEDVVNKYE  143 (295)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            99999999999999996 77778776664

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.93  E-value=6.7e-27  Score=195.99  Aligned_cols=102  Identities=20%  Similarity=0.341  Sum_probs=82.9

Q ss_pred             CCCCCCc---cccchhhhHHHHHHhhhcCCCCCh------HHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCH
Q psy13140         10 EDCPLDK---DQLGYQTWGLLHTIAAYYPEKPTA------DEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQ   80 (122)
Q Consensus        10 ~~~p~~~---~~~G~alW~llHtla~~~p~~ps~------~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr   80 (122)
                      -+|--++   ..+-+++|+|||||||+||++|+.      .++..+..|...+..||||.+|+.||.+++++++++|+||
T Consensus       363 ~~C~gs~~~~rg~~C~lW~l~Htltv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ff~C~~Ca~hF~~~~~~~~~~v~s~  442 (519)
T 3t58_A          363 VGCQGSEPHFRGFPCSLWVLFHFLTVQANRYSEAHPQEPADGQEVLQAMRSYVQFFFGCRDSADHFEQMAAASMHQVRSP  442 (519)
T ss_dssp             STTBCSSTTSBSHHHHHHHHHHHHHHHHHHHHHTSTTSCCCSCHHHHHHHHHHHHHCSBHHHHHHHHHHHHHHGGGCCSH
T ss_pred             ccCCCCCcccCCcCcHHHHHHHHHHccCccCCccccccccchHHHHHHHHHHHHHCCCchHHHHHHHHHHhhCCCcCCCH
Confidence            4554443   456789999999999999988754      3455666666656688999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHhhh-----CCCCCCccchHhh
Q psy13140         81 RALAGWLCWVHNHINQKL-----GKPQFDCSRLDER  111 (122)
Q Consensus        81 ~~l~~Wl~~~HN~VN~rL-----gKp~~~c~~~~~r  111 (122)
                      +++++|||++||.||+||     ++|.|++..+.-+
T Consensus       443 ~~~~~Wlw~~HN~VN~rL~~~~~~dp~f~k~q~P~~  478 (519)
T 3t58_A          443 SNAILWLWTSHNRVNARLSGALSEDPHFPKVQWPPR  478 (519)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTCCTTSCCCSSSCT
T ss_pred             HHHHHHHHHhhCHHHhhcCCCCCCCCCCCccCCCCc
Confidence            999999999999999999     5567776655433

>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*

Probab=99.91  E-value=4.3e-25  Score=172.06  Aligned_cols=101  Identities=21%  Similarity=0.390  Sum_probs=78.0

Q ss_pred             CCCCCCc---cccchhhhHHHHHHhhhcCCCCCh---------HHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCC
Q psy13140         10 EDCPLDK---DQLGYQTWGLLHTIAAYYPEKPTA---------DEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPAT   77 (122)
Q Consensus        10 ~~~p~~~---~~~G~alW~llHtla~~~p~~ps~---------~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v   77 (122)
                      -+|--+.   ..+-+++|+|||+||++++++|..         +..++|+.||+.   ||||++|+.||.+++++++++|
T Consensus       106 vgC~GS~p~~RGy~CgLW~LFH~LTV~a~~~~~~~~~~~~~~~~vl~ai~~fv~~---FypC~~Ca~hF~~~~~~~~~~v  182 (261)
T 3llk_A          106 IGCQGSEPHFRGFPCSLWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHY---FFGCRDCASHFEQMAAASMHRV  182 (261)
T ss_dssp             STTCCSSTTSSSHHHHHHHHHHHHHHHHHCC---------CGGGHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHGGGC
T ss_pred             cccCCCCCccCCcCcHHHHHHHHHHhhhhcccccccccccCHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhhCCCcc
Confidence            3454433   456679999999999998877532         233556666664   5999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhHHHhhhC-----CCCCCccchHhhhc
Q psy13140         78 SSQRALAGWLCWVHNHINQKLG-----KPQFDCSRLDERWR  113 (122)
Q Consensus        78 ~sr~~l~~Wl~~~HN~VN~rLg-----Kp~~~c~~~~~rw~  113 (122)
                      +|++++++|||++||.||+||+     .|.|++..+..+..
T Consensus       183 ~sr~~~~lWLw~~HN~VN~rLag~~seDP~fpK~qwP~~~~  223 (261)
T 3llk_A          183 GSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQWPPREL  223 (261)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHTTCTTSCTTSCCCSSSCTTT
T ss_pred             CCHHHHHHHHHHhcCHHhhhcCCCCCCCCCCCccCCCCchh
Confidence            9999999999999999999994     56777755544433

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.89  E-value=3.1e-24  Score=178.65  Aligned_cols=86  Identities=19%  Similarity=0.344  Sum_probs=70.8

Q ss_pred             cccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhHHHh
Q psy13140         17 DQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHINQ   96 (122)
Q Consensus        17 ~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~   96 (122)
                      ..+-+++|+|||||||+||+     ++..+..|...+.+||||.+|+.||.+++      +++++++++|||++||.||+
T Consensus       298 rg~~CslW~l~Htlt~~~~~-----~~~~~~~~~~~~~~ffpC~~Ca~hF~~~~------~~s~~~~~lWlw~~HN~VN~  366 (470)
T 3qcp_A          298 RGFPCGMWLLLHALTVNTPA-----DRNVLEVIQNYIRYFFSCKECRDHFIQFN------FSPNEDPVLQLWRAHNNVNA  366 (470)
T ss_dssp             SSHHHHHHHHHHHHHHHCCT-----TCCHHHHHHHHHHHHCSCHHHHHHHTTCC------CCSSSCHHHHHHHHHHHHHH
T ss_pred             CCcCchHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHccCcHHHHHHHHHHh------ccCHHHHHHHHHHHhCHHHH
Confidence            34667999999999999998     24455565555667899999999999876      78999999999999999999


Q ss_pred             hhCC------CCCCccchHhhhc
Q psy13140         97 KLGK------PQFDCSRLDERWR  113 (122)
Q Consensus        97 rLgK------p~~~c~~~~~rw~  113 (122)
                      ||+|      |.|||..+.-...
T Consensus       367 rL~~~~~~~dp~fpk~~~P~~~~  389 (470)
T 3qcp_A          367 RLANVKDGADPLVPKRQFPTLEA  389 (470)
T ss_dssp             HHTTCCTTSCTTSCCCCSSCTTT
T ss_pred             hcCCCCCCCCCCCCccCCCCchh
Confidence            9997      7788876654443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d1oqca_	112	a.24.15.1 (A:) Augmenter of liver regeneration {Ra	4e-42
d1jr8a_	105	a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast	8e-35

>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Augmenter of liver regeneration
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  132 bits (334), Expect = 4e-42
 Identities = 61/112 (54%), Positives = 81/112 (72%)

Query: 10  EDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSL 69
           EDCP D+++LG  TW  LHT+AAYYP+ PT +++++M  F  +  KFYPCE CA D    
Sbjct: 1   EDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKR 60

Query: 70  LKLRPPATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDGWDDGSC 121
           +    P TS++ + + WLC +HN +N+KLGKP FDCSR+DERWRDGW DGSC
Sbjct: 61  IDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSC 112

>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 105

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Thiol oxidase Erv2p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (285), Expect = 8e-35
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query: 16  KDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPP 75
           K ++G  +W   HT+ A +P++PT +E  ++ TF  L  + YPC  C+  F  L++  P 
Sbjct: 5   KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPV 64

Query: 76  ATSSQRALAGWLCWVHNHINQKLGKPQFDCSRLDERWRDG 115
            TSS+ A A W C +HN +N+ L K  +DC+ + E +  G
Sbjct: 65  QTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCG 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1oqca_	112	Augmenter of liver regeneration {Rat (Rattus norve	100.0
d1jr8a_	105	Thiol oxidase Erv2p {Baker's yeast (Saccharomyces	100.0

>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Augmenter of liver regeneration
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.5e-46  Score=257.68  Aligned_cols=112  Identities=54%  Similarity=1.224  Sum_probs=110.6

Q ss_pred             CCCCCCccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q psy13140         10 EDCPLDKDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCW   89 (122)
Q Consensus        10 ~~~p~~~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~   89 (122)
                      ++||+++++|||++|++||++|+.||++|+..++..+..||++|..++||++||.||.++++++|+.+.||++|++|+|+
T Consensus         1 ~~~p~~~~~~Gp~~W~~lH~ia~~yp~~pt~~~~~~~~~fi~~l~~~lPC~~Cr~h~~~~l~~~~~~~~sr~~l~~wl~~   80 (112)
T d1oqca_           1 EDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDRSQPDTSTRVSFSQWLCR   80 (112)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHHHHHH
T ss_pred             CCCCCChHHccHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHhChhCccHHHHHHHHHHHHhcCcccCCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHhhhCCCCCCccchHhhhcCCCCCCCC
Q psy13140         90 VHNHINQKLGKPQFDCSRLDERWRDGWDDGSC  121 (122)
Q Consensus        90 ~HN~VN~rLgKp~~~c~~~~~rw~~g~~~~~~  121 (122)
                      +||.||+|||||+++|+++.++|++|+.||+|
T Consensus        81 ~HN~VN~rlgKp~~~~~~~~~~Y~~~~~~~~~  112 (112)
T d1oqca_          81 LHNEVNRKLGKPDFDCSRVDERWRDGWKDGSC  112 (112)
T ss_dssp             HHHHHHHHTTCCCCCGGGHHHHHTTCCTTSCC
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHccCCCCCC
Confidence            99999999999999999999999999999999

>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Thiol oxidase Erv2p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-42  Score=236.12  Aligned_cols=101  Identities=36%  Similarity=0.754  Sum_probs=99.2

Q ss_pred             ccccchhhhHHHHHHhhhcCCCCChHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhHHH
Q psy13140         16 KDQLGYQTWGLLHTIAAYYPEKPTADEEREMKTFFMLLGKFYPCESCARDFSSLLKLRPPATSSQRALAGWLCWVHNHIN   95 (122)
Q Consensus        16 ~~~~G~alW~llHtla~~~p~~ps~~~~~~~~~fi~~f~~~~PC~~C~~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN   95 (122)
                      |++|||++|++|||+|+.||++|+.+++..+.+||.+|..++||++||.||.++++++|+.++||++|+.|+|++||.||
T Consensus         5 k~e~Gp~~W~~lHtia~~yp~~pt~~~k~~~~~f~~~l~~~lPC~~C~~h~~~~l~~~p~~~~sr~~l~~wl~~~HN~VN   84 (105)
T d1jr8a_           5 KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPVQTSSRTAAAMWGCHIHNKVN   84 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhCccccCCHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCCccchHhhhcCCC
Q psy13140         96 QKLGKPQFDCSRLDERWRDGW  116 (122)
Q Consensus        96 ~rLgKp~~~c~~~~~rw~~g~  116 (122)
                      +|||||+|+|+++.++|++|+
T Consensus        85 ~~lgKp~~~~~~~~~~Y~~gc  105 (105)
T d1jr8a_          85 EYLKKDIYDCATILEDYDCGC  105 (105)
T ss_dssp             HHTTCCCCCCTTHHHHTCCCC
T ss_pred             HHcCCCCcCHHHHHHHHhcCC
Confidence            999999999999999999986