Psyllid ID: psy13179

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEMLKHYNE
cccccccHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcc
ccccccHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccc
matvippneqFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKehpdawtrVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIktsstpetlEREKMYLNKLNMILVQVLKRewpknwqsfipdivgasktneslCQNNMVILKLLSEevfdfsggQLTQAKAKHLKDSMCLQFSQIFTLCQFvldnssnaslvGATLETLLRFLNwiplgyifETNLITTLIEKFlnvplfrnvTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLKEhgsliekkstpeEMLKHYNE
matvippneqfKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLiiktsstpetlEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLKEHGsliekkstpeemlkhyne
MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEMLKHYNE
**********FKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLKEHGS*****************
**************LDFNQKLDITLLDNIVECMYT******KA*QEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML*****
MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQ*********KDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTP*********
**TVIP*NEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTP***L*****
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MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEMLKHYNE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query352 2.2.26 [Sep-21-2011]
Q80U96 1071 Exportin-1 OS=Rattus norv yes N/A 0.948 0.311 0.732 1e-145
Q6P5F9 1071 Exportin-1 OS=Mus musculu yes N/A 0.948 0.311 0.732 1e-145
O14980 1071 Exportin-1 OS=Homo sapien yes N/A 0.948 0.311 0.732 1e-145
Q9TVM2 1063 Exportin-1 OS=Drosophila yes N/A 0.951 0.315 0.689 1e-135
P14068 1078 Exportin-1 OS=Schizosacch yes N/A 0.957 0.312 0.502 3e-98
Q54EV7 1057 Exportin-1 OS=Dictyosteli yes N/A 0.928 0.309 0.507 6e-93
P30822 1084 Exportin-1 OS=Saccharomyc yes N/A 0.948 0.308 0.462 1e-87
Q54PQ8 1135 Exportin-5 OS=Dictyosteli no N/A 0.607 0.188 0.235 1e-11
Q9HAV4 1204 Exportin-5 OS=Homo sapien no N/A 0.471 0.137 0.265 7e-11
Q924C1 1204 Exportin-5 OS=Mus musculu no N/A 0.485 0.142 0.261 4e-09
>sp|Q80U96|XPO1_RAT Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1 Back     alignment and function desciption
 Score =  515 bits (1327), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/336 (73%), Positives = 284/336 (84%), Gaps = 2/336 (0%)

Query: 12  KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
           ++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct: 14  RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73

Query: 72  QTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMI 131
            TK+Y LQILE VIKTRWK LPR QC+GIKKY+VGLIIKTSS P  +E+EK+Y+ KLNMI
Sbjct: 74  NTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMI 133

Query: 132 LVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKH 191
           LVQ+LK+EWPK+W +FI DIVGAS+T+ESLCQNNMVILKLLSEEVFDFS GQ+TQ KAKH
Sbjct: 134 LVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKH 193

Query: 192 LKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEK 251
           LKDSMC +FSQIF LCQFV++NS NA LV ATLETLLRFLNWIPLGYIFET LI+TLI K
Sbjct: 194 LKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYK 253

Query: 252 FLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMG 311
           FLNVP+FRNV+LKCLTEIA VS   S YE  +  LFT TM QL+ M P++ NI+ AY+ G
Sbjct: 254 FLNVPMFRNVSLKCLTEIAGVS--VSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNG 311

Query: 312 KDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
           KD EQNFIQNL++FLCTFLKEHG L+EK+    E L
Sbjct: 312 KDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREAL 347
Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES) and of RNAs. In the nucleus, in association with RANBP3, binds cooperatively to the NES on its target protein and to the GTPase Ran in its active GTP-bound form. Docking of this complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of an nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the cargo from the export receptor. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in U3 snoRNA transport from Cajal bodies to nucleoli. Binds to late precursor U3 snoRNA bearing a TMG cap.
Rattus norvegicus (taxid: 10116)
>sp|Q6P5F9|XPO1_MOUSE Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1 Back     alignment and function description
>sp|O14980|XPO1_HUMAN Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1 Back     alignment and function description
>sp|Q9TVM2|XPO1_DROME Exportin-1 OS=Drosophila melanogaster GN=emb PE=1 SV=1 Back     alignment and function description
>sp|P14068|XPO1_SCHPO Exportin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=xpo1 PE=1 SV=3 Back     alignment and function description
>sp|Q54EV7|XPO1_DICDI Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=3 SV=2 Back     alignment and function description
>sp|P30822|XPO1_YEAST Exportin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CRM1 PE=1 SV=1 Back     alignment and function description
>sp|Q54PQ8|XPO5_DICDI Exportin-5 OS=Dictyostelium discoideum GN=xpo5 PE=3 SV=1 Back     alignment and function description
>sp|Q9HAV4|XPO5_HUMAN Exportin-5 OS=Homo sapiens GN=XPO5 PE=1 SV=1 Back     alignment and function description
>sp|Q924C1|XPO5_MOUSE Exportin-5 OS=Mus musculus GN=Xpo5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
332024051 1093 Exportin-1 [Acromyrmex echinatior] 0.971 0.312 0.779 1e-157
156543308 1060 PREDICTED: exportin-1-like [Nasonia vitr 0.965 0.320 0.781 1e-157
48120807 1062 PREDICTED: exportin-1 [Apis mellifera] 0.965 0.320 0.776 1e-155
340709138 1062 PREDICTED: exportin-1-like [Bombus terre 0.965 0.320 0.773 1e-155
383859079 1050 PREDICTED: exportin-1-like [Megachile ro 0.980 0.328 0.761 1e-154
350413068 1062 PREDICTED: exportin-1-like [Bombus impat 0.965 0.320 0.764 1e-152
241311433 1047 Exportin, putative [Ixodes scapularis] g 0.968 0.325 0.751 1e-151
193587136 1079 PREDICTED: exportin-1 isoform 3 [Acyrtho 0.980 0.319 0.738 1e-151
427788519 1092 Putative nuclear transport receptor crm1 0.943 0.304 0.757 1e-149
321459936 1075 hypothetical protein DAPPUDRAFT_327633 [ 0.943 0.308 0.750 1e-148
>gi|332024051|gb|EGI64269.1| Exportin-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/344 (77%), Positives = 298/344 (86%), Gaps = 2/344 (0%)

Query: 9   EQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYS 68
           EQ  KLLDFNQKLDITLLDNIV CMYTG+G +Q+ AQEVLT LKEHP+AWTRVDTILEYS
Sbjct: 35  EQASKLLDFNQKLDITLLDNIVGCMYTGIGEQQRVAQEVLTTLKEHPNAWTRVDTILEYS 94

Query: 69  SNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKL 128
            NQQTK+Y LQILEQVIKTRWK LPR QC+GIKKYIVGLIIKTSS PET+E  K+YLNKL
Sbjct: 95  QNQQTKYYGLQILEQVIKTRWKVLPRNQCEGIKKYIVGLIIKTSSDPETMEASKVYLNKL 154

Query: 129 NMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAK 188
           NMILVQVLKREWPKNW+SFI DIVGASKTNESLCQNNM ILKLLSEEVFDFS GQLTQ K
Sbjct: 155 NMILVQVLKREWPKNWESFISDIVGASKTNESLCQNNMTILKLLSEEVFDFSSGQLTQTK 214

Query: 189 AKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTL 248
           AKHLKD+MC +FSQIF LCQFV++NS N  LV  TLETLLRFLNWIPLGYIFET LITTL
Sbjct: 215 AKHLKDTMCSEFSQIFQLCQFVMENSQNVPLVAVTLETLLRFLNWIPLGYIFETKLITTL 274

Query: 249 IEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAY 308
           I KFLNVP+FRNVTLKCLTEIAAV     NY+++++ LF  TM QL++M P++ NI++AY
Sbjct: 275 IYKFLNVPIFRNVTLKCLTEIAAVVAIMPNYDDMFIILFINTMEQLELMLPLETNIREAY 334

Query: 309 AMGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEMLK--HY 350
           A G+D EQNFIQNLAMFLCT+LK+HG LIEKK   E ++K  HY
Sbjct: 335 AAGQDQEQNFIQNLAMFLCTYLKDHGDLIEKKQMNEILVKALHY 378

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156543308|ref|XP_001604619.1| PREDICTED: exportin-1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|48120807|ref|XP_396469.1| PREDICTED: exportin-1 [Apis mellifera] Back     alignment and taxonomy information
>gi|340709138|ref|XP_003393170.1| PREDICTED: exportin-1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383859079|ref|XP_003705025.1| PREDICTED: exportin-1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350413068|ref|XP_003489867.1| PREDICTED: exportin-1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|241311433|ref|XP_002407864.1| Exportin, putative [Ixodes scapularis] gi|215497239|gb|EEC06733.1| Exportin, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|193587136|ref|XP_001943261.1| PREDICTED: exportin-1 isoform 3 [Acyrthosiphon pisum] gi|328719026|ref|XP_003246644.1| PREDICTED: exportin-1 isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|427788519|gb|JAA59711.1| Putative nuclear transport receptor crm1/msn5 importin beta superfamily [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|321459936|gb|EFX70984.1| hypothetical protein DAPPUDRAFT_327633 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
UNIPROTKB|F1NVE5 1071 XPO1 "Uncharacterized protein" 0.957 0.314 0.733 1.4e-133
UNIPROTKB|E1BE98 1071 XPO1 "Uncharacterized protein" 0.957 0.314 0.730 4.8e-133
UNIPROTKB|E2R9K4 1071 XPO1 "Uncharacterized protein" 0.957 0.314 0.730 4.8e-133
MGI|MGI:2144013 1071 Xpo1 "exportin 1, CRM1 homolog 0.957 0.314 0.725 3.4e-132
RGD|620517 1071 Xpo1 "exportin 1, CRM1 homolog 0.957 0.314 0.725 3.4e-132
UNIPROTKB|O14980 1071 XPO1 "Exportin-1" [Homo sapien 0.957 0.314 0.725 5.6e-132
ZFIN|ZDB-GENE-070530-6 1074 xpo1b "exportin 1 (CRM1 homolo 0.957 0.313 0.732 5.6e-132
UNIPROTKB|Q9PW90 1071 Q9PW90 "CRM1/XPO1 protein" [Xe 0.957 0.314 0.725 2.4e-131
ZFIN|ZDB-GENE-050309-201 1056 xpo1a "exportin 1 (CRM1 homolo 0.957 0.319 0.719 6.4e-131
FB|FBgn0020497 1063 emb "embargoed" [Drosophila me 0.951 0.315 0.689 4.9e-124
UNIPROTKB|F1NVE5 XPO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 1309 (465.8 bits), Expect = 1.4e-133, P = 1.4e-133
 Identities = 251/342 (73%), Positives = 287/342 (83%)

Query:    12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
             ++LLDFNQKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct:    14 RQLLDFNQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73

Query:    72 QTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMI 131
              TK+Y LQILE VIKTRWK LPR QC+GIKKY+VGLIIKTSS P  +E+EK+Y+ KLNMI
Sbjct:    74 NTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMI 133

Query:   132 LVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKH 191
             LVQ+LK+EWPK+W +FI DIVGAS+T+ESLCQNNMVILKLLSEEVFDFS GQ+TQ KAKH
Sbjct:   134 LVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKH 193

Query:   192 LKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEK 251
             LKDSMC +FSQIF LCQFV++NS NA LV ATLETLLRFLNWIPLGYIFET LI+TLI K
Sbjct:   194 LKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYK 253

Query:   252 FLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMG 311
             FLNVP+FRNV+LKCLTEIA VS   S YE  +V LFT TM QL+ M P++ NI+ AY+ G
Sbjct:   254 FLNVPMFRNVSLKCLTEIAGVS--VSQYEEQFVTLFTLTMMQLKQMLPLNTNIRLAYSNG 311

Query:   312 KDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEMLK---HY 350
             KD EQNFIQNL++FLCTFLKEHG LIEK+    E L    HY
Sbjct:   312 KDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEALHY 353
GO:0005643 "nuclear pore" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA
UNIPROTKB|E1BE98 XPO1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9K4 XPO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2144013 Xpo1 "exportin 1, CRM1 homolog (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620517 Xpo1 "exportin 1, CRM1 homolog (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O14980 XPO1 "Exportin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070530-6 xpo1b "exportin 1 (CRM1 homolog, yeast) b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9PW90 Q9PW90 "CRM1/XPO1 protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050309-201 xpo1a "exportin 1 (CRM1 homolog, yeast) a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0020497 emb "embargoed" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P14068XPO1_SCHPONo assigned EC number0.50290.95730.3126yesN/A
Q54EV7XPO1_DICDINo assigned EC number0.50740.92890.3093yesN/A
Q9TVM2XPO1_DROMENo assigned EC number0.68930.95170.3151yesN/A
O14980XPO1_HUMANNo assigned EC number0.73210.94880.3118yesN/A
Q80U96XPO1_RATNo assigned EC number0.73210.94880.3118yesN/A
Q6P5F9XPO1_MOUSENo assigned EC number0.73210.94880.3118yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
COG5101 1053 COG5101, CRM1, Importin beta-related nuclear trans 1e-116
pfam08389147 pfam08389, Xpo1, Exportin 1-like protein 4e-48
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 1e-14
pfam0381071 pfam03810, IBN_N, Importin-beta N-terminal domain 6e-08
>gnl|CDD|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  361 bits (927), Expect = e-116
 Identities = 147/340 (43%), Positives = 214/340 (62%), Gaps = 8/340 (2%)

Query: 14  LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
           +L+F++ LDI LLD +V   Y G G +Q+ AQ +LT  +E PDAWT+ D IL  S   Q+
Sbjct: 4   ILEFDKDLDIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQS 63

Query: 74  KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
           K+ AL +L+++I T+WK LP     GI+ Y+V L+I+ S   +  +++K  LNKL++ LV
Sbjct: 64  KYIALSLLDKLITTKWKLLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLV 123

Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
           Q+LK+EWP+NW +FIP+++  S+ +  +C+NNM++LKLLSEEVFDFS  Q+TQ K + LK
Sbjct: 124 QILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLK 183

Query: 194 DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253
           + M ++F QIF LC+ +L+ S + SL+ ATLE+LLRFL WIPL YIFETN+I  ++E F 
Sbjct: 184 NQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYIFETNIIELVLEHFN 243

Query: 254 NVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQM------MFPMDINIKQA 307
           ++P  R  TL CLTEI  +       EN           Q           P + +I + 
Sbjct: 244 SMPDTRVATLSCLTEIVDL--GRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEV 301

Query: 308 YAMGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
           Y      EQ F+Q LA FL +  + + SL+E +   E +L
Sbjct: 302 YGGMDKNEQIFVQKLAQFLSSLYEVYISLLEAREMAENLL 341

Length = 1053
>gnl|CDD|219817 pfam08389, Xpo1, Exportin 1-like protein Back     alignment and domain information
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 352
COG5101 1053 CRM1 Importin beta-related nuclear transport recep 100.0
KOG2020|consensus 1041 100.0
KOG2021|consensus 980 100.0
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 99.93
KOG2022|consensus 982 99.86
KOG2171|consensus 1075 99.84
KOG2081|consensus 559 99.81
KOG1992|consensus 960 99.77
KOG1991|consensus 1010 99.76
KOG1410|consensus 1082 99.66
KOG2023|consensus 885 99.55
KOG1993|consensus 978 99.53
COG5657 947 CSE1 CAS/CSE protein involved in chromosome segreg 99.43
COG5656 970 SXM1 Importin, protein involved in nuclear import 99.31
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 99.31
KOG1241|consensus 859 99.29
KOG2274|consensus 1005 99.17
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 98.9
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 94.9
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 92.04
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 90.16
KOG2171|consensus 1075 89.17
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 89.1
PF11864 464 DUF3384: Domain of unknown function (DUF3384); Int 88.94
PRK09687280 putative lyase; Provisional 88.92
PF13251182 DUF4042: Domain of unknown function (DUF4042) 88.22
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 86.97
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 86.84
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 85.2
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 83.74
PF05536 543 Neurochondrin: Neurochondrin 83.07
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 82.22
KOG2023|consensus 885 81.42
KOG1824|consensus 1233 80.98
PF08767 319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 80.4
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 80.33
PF08167165 RIX1: rRNA processing/ribosome biogenesis 80.22
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-62  Score=463.33  Aligned_cols=336  Identities=43%  Similarity=0.751  Sum_probs=316.5

Q ss_pred             HHHhhcccccCCHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccC
Q psy13179         11 FKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWK   90 (352)
Q Consensus        11 ~~~~l~~~~~~di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~   90 (352)
                      ||.||+|+++.|++.|+++|..+|.|++.++++|+++|.+||+.||+|..+.+||+.|..|+.+|.|+++|++.|+++|+
T Consensus         1 MEgIL~fd~dLdiallDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWk   80 (1053)
T COG5101           1 MEGILEFDKDLDIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWK   80 (1053)
T ss_pred             CcchhhcccccCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHH
Q psy13179         91 ALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILK  170 (352)
Q Consensus        91 ~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~  170 (352)
                      .+|.+.|.+||+++++.++..+.|+......+.+++|+..++++|+|++||++||+|++++++.++++-..|+|+|.+|+
T Consensus        81 llp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivLk  160 (1053)
T COG5101          81 LLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLK  160 (1053)
T ss_pred             hCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHHH
Confidence            99999999999999999999988877777778888999999999999999999999999999999999899999999999


Q ss_pred             hHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHH
Q psy13179        171 LLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIE  250 (352)
Q Consensus       171 ~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~  250 (352)
                      .|+|||++|+.+++|+.|.+.+|+.|...|++||.+|.++|+.++++++++++|+.+.+|+.|+|+++|+++++++++..
T Consensus       161 lLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~~  240 (1053)
T COG5101         161 LLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYIFETNIIELVLE  240 (1053)
T ss_pred             HhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Confidence            99999999998899999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhcCchhhHHHHHHHHHHHHhccCCcc---chHHHHHHHHHHHHHHHH-hcCCCCccHHHHhccCCcchHHHHHHHHHHH
Q psy13179        251 KFLNVPLFRNVTLKCLTEIAAVSGTYS---NYENVYVALFTTTMAQLQ-MMFPMDINIKQAYAMGKDTEQNFIQNLAMFL  326 (352)
Q Consensus       251 ~~l~~~~~~~~al~cL~ei~~~~~~~~---~~~~~~~~~f~~~l~~l~-~~~p~~~~~~~~~~~~~~~~~~f~~~l~~~l  326 (352)
                      ++.+.|++|..+++||+||++.+.-|.   .-...++.+|+.++.... ...|..+++.+.|++.+..++.|+++||.|+
T Consensus       241 ~f~s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL  320 (1053)
T COG5101         241 HFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFL  320 (1053)
T ss_pred             HhccCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHH
Confidence            999999999999999999999986542   123567778888777665 6788899999999999999999999999999


Q ss_pred             HHHHHHhhhhhcCCCccHHH
Q psy13179        327 CTFLKEHGSLIEKKSTPEEM  346 (352)
Q Consensus       327 ~~f~~~~~~~le~~~~~~~~  346 (352)
                      |+|++.|.+++|++++.+.+
T Consensus       321 ~s~~~~~~~lLE~~e~~e~l  340 (1053)
T COG5101         321 SSLYEVYISLLEAREMAENL  340 (1053)
T ss_pred             HHHHHHHHHHhcChhHHHHH
Confidence            99999999999998766444

>KOG2020|consensus Back     alignment and domain information
>KOG2021|consensus Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG2022|consensus Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>KOG2081|consensus Back     alignment and domain information
>KOG1992|consensus Back     alignment and domain information
>KOG1991|consensus Back     alignment and domain information
>KOG1410|consensus Back     alignment and domain information
>KOG2023|consensus Back     alignment and domain information
>KOG1993|consensus Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG1241|consensus Back     alignment and domain information
>KOG2274|consensus Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2023|consensus Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
3gjx_A 1073 Crystal Structure Of The Nuclear Export Complex Crm 1e-146
3gb8_A 1071 Crystal Structure Of Crm1SNURPORTIN-1 Complex Lengt 1e-146
3m1i_C 1049 Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex 9e-89
4hb3_C 1023 Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked 1e-88
4hb4_C 1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 1e-88
4hax_C 1023 Crystal Structure Of Crm1 Inhibitor Ratjadone A In 1e-88
4haw_C 1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 1e-88
4hay_C 1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 1e-88
4haz_C 1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 1e-88
3vyc_A 1033 Crystal Structure Of Unliganded Saccharomyces Cerev 1e-88
4hb2_C 1023 Crystal Structure Of Crm1-ran-ranbp1 Length = 1023 1e-88
4hb0_C 1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 1e-88
4gpt_C 1060 Crystal Structure Of Kpt251 In Complex With Crm1-ra 1e-88
4hat_C 1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 2e-88
4fgv_A 1086 Crystal Structure Of Free Crm1 (crystal Form 1) Len 1e-87
3a6p_A 1204 Crystal Structure Of Exportin-5:rangtp:pre-Mirna Co 5e-12
2x1g_F 971 Crystal Structure Of Importin13 - Mago-Y14 Complex 2e-04
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1- Snurportin1-Rangtp Length = 1073 Back     alignment and structure 
Iteration: 1

 Score =  516 bits (1328), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/336 (73%), Positives = 284/336 (84%), Gaps = 2/336 (0%)
Query: 12  KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
           ++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N 
Sbjct: 16  RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 75
Query: 72  QTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMI 131
            TK+Y LQILE VIKTRWK LPR QC+GIKKY+VGLIIKTSS P  +E+EK+Y+ KLNMI
Sbjct: 76  NTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMI 135
Query: 132 LVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKH 191
           LVQ+LK+EWPK+W +FI DIVGAS+T+ESLCQNNMVILKLLSEEVFDFS GQ+TQ KAKH
Sbjct: 136 LVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKH 195
Query: 192 LKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEK 251
           LKDSMC +FSQIF LCQFV++NS NA LV ATLETLLRFLNWIPLGYIFET LI+TLI K
Sbjct: 196 LKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYK 255
Query: 252 FLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMG 311
           FLNVP+FRNV+LKCLTEIA VS   S YE  +  LFT TM QL+ M P++ NI+ AY+ G
Sbjct: 256 FLNVPMFRNVSLKCLTEIAGVS--VSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNG 313
Query: 312 KDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
           KD EQNFIQNL++FLCTFLKEHG L+EK+    E L
Sbjct: 314 KDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREAL 349
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex Length = 1071 Back     alignment and structure
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 1049 Back     alignment and structure
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In Excess Crm1 Inhibitor Leptomycin B Length = 1023 Back     alignment and structure
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(537dltvk541/glceq)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex With Crm1(k579a)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k548a)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k548e,k579q)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae Crm1 (Xpo1p) Length = 1033 Back     alignment and structure
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With Crm1-ran-ranbp1 Length = 1060 Back     alignment and structure
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1- Ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1) Length = 1086 Back     alignment and structure
>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex Length = 1204 Back     alignment and structure
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 1e-89
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 6e-86
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 2e-54
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 9e-54
2x19_B 963 Importin-13; nuclear transport, protein transport; 3e-50
2x1g_F 971 Cadmus; transport protein, developmental protein, 5e-37
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 5e-06
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
 Score =  289 bits (740), Expect = 1e-89
 Identities = 246/335 (73%), Positives = 283/335 (84%), Gaps = 2/335 (0%)

Query: 13  KLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQ 72
           +LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N  
Sbjct: 17  QLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMN 76

Query: 73  TKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMIL 132
           TK+Y LQILE VIKTRWK LPR QC+GIKKY+VGLIIKTSS P  +E+EK+Y+ KLNMIL
Sbjct: 77  TKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMIL 136

Query: 133 VQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHL 192
           VQ+LK+EWPK+W +FI DIVGAS+T+ESLCQNNMVILKLLSEEVFDFS GQ+TQ KAKHL
Sbjct: 137 VQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHL 196

Query: 193 KDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKF 252
           KDSMC +FSQIF LCQFV++NS NA LV ATLETLLRFLNWIPLGYIFET LI+TLI KF
Sbjct: 197 KDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKF 256

Query: 253 LNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGK 312
           LNVP+FRNV+LKCLTEIA VS   S YE  +  LFT TM QL+ M P++ NI+ AY+ GK
Sbjct: 257 LNVPMFRNVSLKCLTEIAGVS--VSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGK 314

Query: 313 DTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
           D EQNFIQNL++FLCTFLKEHG L+EK+    E L
Sbjct: 315 DDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREAL 349
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 100.0
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 100.0
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 100.0
2x19_B 963 Importin-13; nuclear transport, protein transport; 100.0
2x1g_F 971 Cadmus; transport protein, developmental protein, 100.0
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 99.87
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 99.82
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.8
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 99.79
1qgr_A 876 Protein (importin beta subunit); transport recepto 99.67
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.19
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.72
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 96.24
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 95.72
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 95.69
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 95.69
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 95.61
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 95.58
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 95.55
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 95.54
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 95.22
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 94.9
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 94.7
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 94.64
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 94.33
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 94.13
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 93.98
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 93.68
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 93.47
1qgr_A 876 Protein (importin beta subunit); transport recepto 92.87
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 92.58
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 92.49
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 92.34
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 92.01
3u0r_A 507 Apoptosis inhibitor 5; heat repeat, armadillo repe 91.66
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 91.5
3ul1_B 510 Importin subunit alpha-2; arm repeat, armadillo re 89.76
3tpo_A 529 Importin subunit alpha-2; nuclear import, protein 86.61
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 86.46
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 86.24
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 85.46
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 84.32
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 83.9
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 83.16
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 81.54
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 80.26
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
Probab=100.00  E-value=5.5e-57  Score=475.46  Aligned_cols=330  Identities=74%  Similarity=1.188  Sum_probs=307.6

Q ss_pred             hHHHhhcccccCCHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhcc
Q psy13179         10 QFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRW   89 (352)
Q Consensus        10 ~~~~~l~~~~~~di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W   89 (352)
                      +||.||||++++|++.|++++.++|+|++++|++|+++|++||++|++|..|..+|.+++++++||||+++|+++|+++|
T Consensus        14 ~~~~~ld~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W   93 (1073)
T 3gjx_A           14 AARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRW   93 (1073)
T ss_dssp             CCCCCCSSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTG
T ss_pred             HHHHhhCcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence            48999999999999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHH
Q psy13179         90 KALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVIL  169 (352)
Q Consensus        90 ~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL  169 (352)
                      +.+|+++|..||+++++++.+.+.+++..+.++.+++|++++++.|++++||+.||+|++++++.+++++.+++++|+||
T Consensus        94 ~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL  173 (1073)
T 3gjx_A           94 KILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVIL  173 (1073)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            99999999999999999999876655444556888899999999999999999999999999999988888999999999


Q ss_pred             HhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHH
Q psy13179        170 KLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLI  249 (352)
Q Consensus       170 ~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~  249 (352)
                      +.|+|||+++.+..+++.|+..+|+.|++.++.|+++|..+|+..++++++..+|+|+++|++|+|++++++++++++++
T Consensus       174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~  253 (1073)
T 3gjx_A          174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLI  253 (1073)
T ss_dssp             HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHH
T ss_pred             HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHH
Confidence            99999999886556788899999999999999999999999998889999999999999999999999999999999876


Q ss_pred             HhhcCchhhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHhcCCCCccHHHHhccCCcchHHHHHHHHHHHHHH
Q psy13179        250 EKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTF  329 (352)
Q Consensus       250 ~~~l~~~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~f~~~l~~~l~~f  329 (352)
                      +.+++++.+|++|++||++|++++.  ++|.+.+..+|..+++.+..++|...++...|..++++|++|++++|.|+++|
T Consensus       254 ~~~L~~~~~r~aA~dcL~eIv~k~~--~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~  331 (1073)
T 3gjx_A          254 YKFLNVPMFRNVSLKCLTEIAGVSV--SQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTF  331 (1073)
T ss_dssp             HHTSSSHHHHHHHHHHHHHHHHSCS--GGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHhcCChHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHH
Confidence            7999999999999999999999964  57889999999999999999999999999999988999999999999999999


Q ss_pred             HHHhhhhhcCCC
Q psy13179        330 LKEHGSLIEKKS  341 (352)
Q Consensus       330 ~~~~~~~le~~~  341 (352)
                      ++.|+.++|+.|
T Consensus       332 ~e~~~~lIe~~p  343 (1073)
T 3gjx_A          332 LKEHGQLLEKRL  343 (1073)
T ss_dssp             HHHHHHHHHHCG
T ss_pred             HHHHHHHHhcCc
Confidence            999999999864
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 352
d1wa5c_ 959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 4e-13
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 4e-13
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.4 bits (166), Expect = 4e-13
 Identities = 35/326 (10%), Positives = 93/326 (28%), Gaps = 28/326 (8%)

Query: 40  EQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ-QTKFYALQILEQVIKTRWK------AL 92
             K ++  L  L+        +  ++  ++    T+       +  IK +W        L
Sbjct: 19  TAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLL 78

Query: 93  PREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIV 152
           P    + IKK IV L+I                 ++   +  +   ++P  W + + D+ 
Sbjct: 79  PANNVELIKKEIVPLMISL---------PNNLQVQIGEAISSIADSDFPDRWPTLLSDLA 129

Query: 153 GASKTNESLCQNN-MVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVL 211
                ++ +     + +   + +             + K + D     F  +       +
Sbjct: 130 SRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQI 189

Query: 212 DNSSNASLVGATLETLLRFLNWIPLGYIFET---------NLITTLIEKFLNVPLFRNVT 262
             + N       L  +L  L  +   +  +           +   +  K+L+        
Sbjct: 190 TANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLED 249

Query: 263 LKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFP--MDINIKQAYAMGKDTEQNFIQ 320
                  + +    S+ + +     T        M    + I      ++    + + + 
Sbjct: 250 PDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILV 309

Query: 321 NLAMFLCTFLKEHGSLIEKKSTPEEM 346
           + ++   T +       E  +    M
Sbjct: 310 SKSLSFLTAVTRIPKYFEIFNNESAM 335
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.78
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.75
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.68
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.5
d1ibrb_ 458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.41
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 96.58
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 96.15
d1b3ua_ 588 Constant regulatory domain of protein phosphatase 95.99
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 93.87
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 93.25
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 92.94
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 92.77
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 92.18
d1b3ua_588 Constant regulatory domain of protein phosphatase 91.07
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 90.12
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 87.54
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 85.96
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 85.17
d1wa5b_ 503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 84.71
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 83.37
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 81.94
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=5e-17  Score=167.96  Aligned_cols=145  Identities=14%  Similarity=0.275  Sum_probs=124.0

Q ss_pred             CHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCC-chHHHHHHHHHHHHHHhhccCC------CCH
Q psy13179         22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSS-NQQTKFYALQILEQVIKTRWKA------LPR   94 (352)
Q Consensus        22 di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~-~~~vrffal~~L~~~I~~~W~~------l~~   94 (352)
                      |++++.+++....  +++.|++|++.|++++++|+.+..+..++.+.+ +..+|+.|+..||+.|+++|..      +|+
T Consensus         3 d~~~l~~ll~~s~--~~~~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~   80 (959)
T d1wa5c_           3 DLETVAKFLAESV--IASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA   80 (959)
T ss_dssp             HHHHHHHHHHHTT--SGGGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCH
T ss_pred             cHHHHHHHHHHCC--ChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCH
Confidence            5667777776643  455799999999999999999999999986544 6789999999999999999964      999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh-hhhhHHHHHHHhHH
Q psy13179         95 EQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE-SLCQNNMVILKLLS  173 (352)
Q Consensus        95 e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~  173 (352)
                      ++|..||+.+++.+.+         .++.++++++.+++.|+++|||++||++++++.+.+++++ ....++|.+|..+.
T Consensus        81 e~k~~Ik~~ll~~l~~---------~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~  151 (959)
T d1wa5c_          81 NNVELIKKEIVPLMIS---------LPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIF  151 (959)
T ss_dssp             HHHHHHHHHHHHHHHH---------SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999998864         3556789999999999999999999999999999997753 45677888998888


Q ss_pred             HHhh
Q psy13179        174 EEVF  177 (352)
Q Consensus       174 eEv~  177 (352)
                      ++..
T Consensus       152 k~~~  155 (959)
T d1wa5c_         152 KRWR  155 (959)
T ss_dssp             GGGT
T ss_pred             HHHH
Confidence            7643
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure