Psyllid ID: psy13247

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
MDDEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNTRKRKMETGAQYCDRENYVNSPKLHTSSSMSSSLSEVPAAQ
cccEEEEEccccHHHHHHHHHHHHHcccEEEEEEEcccccccccEEEcEEEEEEcccHHHHHHHHcccccccEEEEccccHHHHHHHHccHHccEEEEEcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccEEEEccccHHHHHHHHHHHHcccccEEEEEEEccccccccEEHHHHEEEHcccHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccEccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MDDEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLAcnwensdiktYKAHQMILSACSPYFEKlflenthphpiiflRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGlceenspngageilrerasspsvtkddvntRKRKMetgaqycdrenyvnspklhtsssmssslsevpaaq
MDDEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLceenspngageilrerasspsvtkddvntrkrkmetgaqycdrenyvnspklhtsssmssslsevpaaq
MDDEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNTRKRKMETGAQYCDRENYVNSPKLHTsssmssslsEVPAAQ
****FCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLC********************************************************************
*DDEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLC********************************************************************
MDDEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCEENSPNGAGEILRER***********NTRKRKMETGAQYCDRENYVNSP*******************
**DEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGL*********************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDDEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNTRKRKMETGAQYCDRENYVNSPKLHTSSSMSSSLSEVPAAQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query187 2.2.26 [Sep-21-2011]
Q8IN81 955 Sex determination protein no N/A 0.754 0.147 0.520 9e-39
Q9W0K4 1067 Protein bric-a-brac 2 OS= no N/A 0.641 0.112 0.472 1e-31
Q9W0K7 977 Protein bric-a-brac 1 OS= no N/A 0.598 0.114 0.478 8e-29
P42283 891 Longitudinals lacking pro no N/A 0.641 0.134 0.448 2e-28
Q9V5M6 963 Longitudinals lacking pro no N/A 0.641 0.124 0.448 2e-28
P42284 549 Longitudinals lacking pro no N/A 0.641 0.218 0.448 2e-28
Q867Z4 970 Longitudinals lacking pro no N/A 0.641 0.123 0.448 4e-28
Q9V5M3 878 Longitudinals lacking pro no N/A 0.641 0.136 0.448 5e-28
P42282 813 Protein tramtrack, alpha no N/A 0.909 0.209 0.354 4e-27
P17789 643 Protein tramtrack, beta i no N/A 0.909 0.264 0.354 6e-27
>sp|Q8IN81|FRU_DROME Sex determination protein fruitless OS=Drosophila melanogaster GN=fru PE=1 SV=1 Back     alignment and function desciption
 Score =  159 bits (402), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 77/148 (52%), Positives = 100/148 (67%), Gaps = 7/148 (4%)

Query: 1   MDDEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYF 60
           MD +FCL+W NH +NLT VL+  LQ E+L DVTLAC  E     T KAHQ ILSACSPYF
Sbjct: 102 MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGE-----TVKAHQTILSACSPYF 156

Query: 61  EKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCE 120
           E +FL+N HPHPII+L+D+ + E+  +L FMY+GEVN+ Q SL   L+TA+ L VRGL +
Sbjct: 157 ETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPMFLKTAESLQVRGLTD 216

Query: 121 ENSPNGAGEI--LRERASSPSVTKDDVN 146
            N+ N   +   LR+ A+S    +   N
Sbjct: 217 NNNLNYRSDCDKLRDSAASSPTGRGPSN 244
Probably acts as a transcriptional regulator. Part of the somatic sex determination hierarchy; sex determination genes transformer (tra) and transformer-2 (tra-2) switch fru splicing from the male-specific pattern to the female-specific pattern through activation of the female-specific fru 5'-splice site. Vital for the development of males and females. Controls the development of the male specific abdominal muscle of Lawrence. Plays a role in male courtship behavior and sexual orientation. Enhances male-specific expression of takeout in brain-associated fat body.
Drosophila melanogaster (taxid: 7227)
>sp|Q9W0K4|BAB2_DROME Protein bric-a-brac 2 OS=Drosophila melanogaster GN=bab2 PE=1 SV=2 Back     alignment and function description
>sp|Q9W0K7|BAB1_DROME Protein bric-a-brac 1 OS=Drosophila melanogaster GN=bab1 PE=2 SV=2 Back     alignment and function description
>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2 Back     alignment and function description
>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/P/Q/S/Z OS=Drosophila melanogaster GN=lola PE=1 SV=4 Back     alignment and function description
>sp|P42284|LOLA2_DROME Longitudinals lacking protein, isoforms H/M/V OS=Drosophila melanogaster GN=lola PE=1 SV=2 Back     alignment and function description
>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1 Back     alignment and function description
>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3 Back     alignment and function description
>sp|P42282|TTKA_DROME Protein tramtrack, alpha isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=3 Back     alignment and function description
>sp|P17789|TTKB_DROME Protein tramtrack, beta isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
255918123 416 fruitless isoform G [Nasonia vitripennis 0.695 0.312 0.557 2e-39
255918098 402 fruitless isoform A [Nasonia vitripennis 0.695 0.323 0.557 2e-39
255918102 349 fruitless isoform F [Nasonia vitripennis 0.695 0.372 0.557 3e-39
255918125 413 fruitless isoform D [Nasonia vitripennis 0.695 0.314 0.557 3e-39
307202377 473 Sex determination protein fruitless [Har 0.887 0.350 0.473 3e-39
306415507237 putative fruitless [Schistocerca gregari 0.748 0.590 0.523 3e-39
255918100 376 fruitless isoform B [Nasonia vitripennis 0.695 0.345 0.557 4e-39
255918111 360 fruitless isoform C [Nasonia vitripennis 0.695 0.361 0.557 4e-39
255918092 720 Nvu1 - fruitless readthrough protein pre 0.695 0.180 0.557 4e-39
255918121 401 fruitless isoform B2 [Nasonia vitripenni 0.695 0.324 0.557 4e-39
>gi|255918123|ref|NP_001157608.1| fruitless isoform G [Nasonia vitripennis] gi|255504437|gb|ACU12209.1| fruitless transcript variant Fru-ZnfG [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/138 (55%), Positives = 101/138 (73%), Gaps = 8/138 (5%)

Query: 1   MDDEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYF 60
           MD ++CL+W NH +NLTDVLS  L  E+L DVTLAC  E     T+KAHQ ILSACSPYF
Sbjct: 1   MDQQYCLRWNNHPANLTDVLSSLLAREALCDVTLACVGE-----TFKAHQTILSACSPYF 55

Query: 61  EKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCE 120
           E +FL+NTHPHPIIFL+D++  E++ +LHFMY+GEVN+ Q  L   L+TA+ L +RGL +
Sbjct: 56  ENIFLQNTHPHPIIFLKDVNDTEMKALLHFMYKGEVNVSQHLLPMFLKTAEALQIRGLTD 115

Query: 121 ENSPNGAGEILRERASSP 138
            NS N  G+   +++ SP
Sbjct: 116 NNSVNNKGD---DKSPSP 130

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|255918098|ref|NP_001157596.1| fruitless isoform A [Nasonia vitripennis] gi|255918105|ref|NP_001157599.1| fruitless isoform A [Nasonia vitripennis] gi|255504407|gb|ACU12194.1| fruitless transcript variant P2-1-A [Nasonia vitripennis] gi|255504413|gb|ACU12197.1| fruitless transcript variant P2-2-A [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|255918102|ref|NP_001157598.1| fruitless isoform F [Nasonia vitripennis] gi|255918109|ref|NP_001157601.1| fruitless isoform F [Nasonia vitripennis] gi|255918117|ref|NP_001157605.1| fruitless isoform F [Nasonia vitripennis] gi|255504411|gb|ACU12196.1| fruitless transcript variant P2-1-F [Nasonia vitripennis] gi|255504417|gb|ACU12199.1| fruitless transcript variant P2-2-F [Nasonia vitripennis] gi|255504423|gb|ACU12202.1| fruitless transcript variant P2-3-F [Nasonia vitripennis] gi|255504431|gb|ACU12206.1| fruitless transcript variant P5-F [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|255918125|ref|NP_001157609.1| fruitless isoform D [Nasonia vitripennis] gi|255504439|gb|ACU12210.1| fruitless transcript variant Fru-ZnfD [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307202377|gb|EFN81805.1| Sex determination protein fruitless [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|306415507|gb|ADM86718.1| putative fruitless [Schistocerca gregaria] Back     alignment and taxonomy information
>gi|255918100|ref|NP_001157597.1| fruitless isoform B [Nasonia vitripennis] gi|255918107|ref|NP_001157600.1| fruitless isoform B [Nasonia vitripennis] gi|255918113|ref|NP_001157603.1| fruitless isoform B [Nasonia vitripennis] gi|255918115|ref|NP_001157604.1| fruitless isoform B [Nasonia vitripennis] gi|255504409|gb|ACU12195.1| fruitless transcript variant P2-1-B [Nasonia vitripennis] gi|255504415|gb|ACU12198.1| fruitless transcript variant P2-2-B [Nasonia vitripennis] gi|255504421|gb|ACU12201.1| fruitless transcript variant P2-3-B [Nasonia vitripennis] gi|255504425|gb|ACU12203.1| fruitless transcript variant P3-B [Nasonia vitripennis] gi|255504427|gb|ACU12204.1| fruitless transcript variant P4-B [Nasonia vitripennis] gi|255504429|gb|ACU12205.1| fruitless transcript variant P5-B [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|255918111|ref|NP_001157602.1| fruitless isoform C [Nasonia vitripennis] gi|255918119|ref|NP_001157606.1| fruitless isoform C [Nasonia vitripennis] gi|255504419|gb|ACU12200.1| fruitless transcript variant P2-2-C [Nasonia vitripennis] gi|255504433|gb|ACU12207.1| fruitless transcript variant P5-C [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|255918092|ref|NP_001157593.1| Nvu1 - fruitless readthrough protein precursor [Nasonia vitripennis] gi|255504398|gb|ACU12191.1| fruitless female-specific transcript variant P0-fru-F [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|255918121|ref|NP_001157607.1| fruitless isoform B2 [Nasonia vitripennis] gi|255504435|gb|ACU12208.1| fruitless transcript variant P6-B [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
FB|FBgn0004652 955 fru "fruitless" [Drosophila me 0.716 0.140 0.549 2.1e-36
FB|FBgn0025525 1067 bab2 "bric a brac 2" [Drosophi 0.641 0.112 0.488 1.9e-28
FB|FBgn0004870 977 bab1 "bric a brac 1" [Drosophi 0.754 0.144 0.418 2.4e-27
FB|FBgn0264981 1089 mamo "maternal gene required f 0.689 0.118 0.455 1.2e-25
FB|FBgn0005630 970 lola "longitudinals lacking" [ 0.641 0.123 0.448 1.1e-24
FB|FBgn0003870 813 ttk "tramtrack" [Drosophila me 0.860 0.198 0.372 2.8e-24
FB|FBgn0000210 880 br "broad" [Drosophila melanog 0.786 0.167 0.383 3.3e-24
FB|FBgn0022238127 lolal "lola like" [Drosophila 0.625 0.921 0.459 1.1e-23
FB|FBgn0263108 798 BtbVII "BTB-protein-VII" [Dros 0.598 0.140 0.444 3.2e-23
FB|FBgn0263102 1085 psq "pipsqueak" [Drosophila me 0.609 0.105 0.442 2.8e-21
FB|FBgn0004652 fru "fruitless" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 388 (141.6 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
 Identities = 78/142 (54%), Positives = 100/142 (70%)

Query:     1 MDDEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYF 60
             MD +FCL+W NH +NLT VL+  LQ E+L DVTLAC  E     T KAHQ ILSACSPYF
Sbjct:   102 MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGE-----TVKAHQTILSACSPYF 156

Query:    61 EKLFLENTHPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCE 120
             E +FL+N HPHPII+L+D+ + E+  +L FMY+GEVN+ Q SL   L+TA+ L VRGL +
Sbjct:   157 ETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPMFLKTAESLQVRGLTD 216

Query:   121 ENSPNGAGEI--LRERA-SSPS 139
              N+ N   +   LR+ A SSP+
Sbjct:   217 NNNLNYRSDCDKLRDSAASSPT 238
GO:0016545 "male courtship behavior, veined wing vibration" evidence=IMP
GO:0008049 "male courtship behavior" evidence=NAS;IMP;TAS
GO:0007618 "mating" evidence=IMP
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS
GO:0045433 "male courtship behavior, veined wing generated song production" evidence=IMP;TAS
GO:0007517 "muscle organ development" evidence=IMP
GO:0007530 "sex determination" evidence=IMP;TAS
GO:0007275 "multicellular organismal development" evidence=IMP
GO:0005634 "nucleus" evidence=NAS
GO:0007617 "mating behavior" evidence=IMP
GO:0016543 "male courtship behavior, orientation prior to leg tapping and wing vibration" evidence=NAS
GO:0007620 "copulation" evidence=NAS;TAS
GO:0007417 "central nervous system development" evidence=IMP;TAS
GO:0046661 "male sex differentiation" evidence=TAS
GO:0048047 "mating behavior, sex discrimination" evidence=IGI;IMP;TAS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0002118 "aggressive behavior" evidence=IMP
GO:0016199 "axon midline choice point recognition" evidence=IMP
GO:0048813 "dendrite morphogenesis" evidence=IMP
FB|FBgn0025525 bab2 "bric a brac 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0004870 bab1 "bric a brac 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0264981 mamo "maternal gene required for meiosis" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0003870 ttk "tramtrack" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0000210 br "broad" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0022238 lolal "lola like" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0263108 BtbVII "BTB-protein-VII" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0263102 psq "pipsqueak" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
pfam00651101 pfam00651, BTB, BTB/POZ domain 3e-22
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-19
PHA03098 534 PHA03098, PHA03098, kelch-like protein; Provisiona 1e-04
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information 
 Score = 85.7 bits (213), Expect = 3e-22
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 10/105 (9%)

Query: 20  LSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDI 79
           L++  ++  L DVTL         K + AH+ +L+ACSPYF+ LF  N      I L D+
Sbjct: 1   LNELRENGELCDVTLVV-----GDKEFHAHKAVLAACSPYFKALFTGN--KEVEITLEDV 53

Query: 80  HHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGL---CEE 121
             ++ E +L F+Y G++ I ++++  +L  A  L +  L   CEE
Sbjct: 54  SPEDFEALLEFIYTGKLEITEENVDDLLALADKLQIPALIDKCEE 98

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 187
KOG4441|consensus 571 99.97
PHA02713 557 hypothetical protein; Provisional 99.96
PHA02790 480 Kelch-like protein; Provisional 99.95
PHA03098 534 kelch-like protein; Provisional 99.94
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.85
KOG4350|consensus 620 99.85
KOG2075|consensus 521 99.85
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.79
KOG4591|consensus280 99.72
KOG4682|consensus 488 99.58
KOG0783|consensus 1267 98.9
KOG0783|consensus 1267 98.89
KOG2838|consensus 401 98.55
KOG2716|consensus230 98.47
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 98.27
KOG2838|consensus401 98.11
KOG0511|consensus516 97.95
KOG3473|consensus112 97.89
KOG2714|consensus 465 97.38
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 97.33
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 97.2
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.06
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 96.95
KOG1665|consensus 302 96.65
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 96.43
KOG2715|consensus210 96.19
KOG0511|consensus 516 96.17
KOG1987|consensus297 95.41
KOG1724|consensus162 94.34
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 91.35
KOG3840|consensus 438 86.38
KOG2723|consensus221 85.83
>KOG4441|consensus Back     alignment and domain information 
Probab=99.97  E-value=1.2e-31  Score=229.17  Aligned_cols=178  Identities=21%  Similarity=0.339  Sum_probs=154.0

Q ss_pred             eeeeeeCCChhHHHHHHHHHHhCCCceeEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCC--CCCCCeEEeCCCCH
Q psy13247          4 EFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLEN--THPHPIIFLRDIHH   81 (187)
Q Consensus         4 ~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~--e~~~~~i~l~~~~~   81 (187)
                      ...+..++|+..+++.++.+++.+.+|||++.+++     ++|+|||.|||++||||++||.++  |+.+..|.+.++++
T Consensus        11 ~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~-----~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~   85 (571)
T KOG4441|consen   11 TSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGD-----REFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDP   85 (571)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhCCCceEEEEECC-----eeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCH
Confidence            35678889999999999999999999999999999     999999999999999999999987  88999999999999


Q ss_pred             HHHHHHhcccccceeccCcccHHHHHHHHhhcCccchHhhcCCCCCCcchhhccCCCCCcccchhHHHHHhhhhhhh---
Q psy13247         82 KELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNTRKRKMETGAQY---  158 (187)
Q Consensus        82 ~~~~~lL~~~Yt~~~~i~~~~~~~ll~~A~~~~~~~L~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  158 (187)
                      .+++.+++|+||+.+.|+.+++.+|+.+|+.||++.+.+.|+.++....-..+ +.....+++.+.|.++.+.+..+   
T Consensus        86 ~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~N-clgi~~~a~~~~~~~L~~~a~~~i~~  164 (571)
T KOG4441|consen   86 ETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSN-CLGIRRFAELHSCTELLEVADEYILQ  164 (571)
T ss_pred             HHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999765433322222 22234456666666666655544   


Q ss_pred             -----cCcccccCCChhHhhhhccCCCccccCCC
Q psy13247        159 -----CDRENYVNSPKLHTSSSMSSSLSEVPAAQ  187 (187)
Q Consensus       159 -----~~~~~f~~l~~~~l~~ils~~~L~v~~~~  187 (187)
                           ..+++|+.||.+.+..+|++++|+|.+|+
T Consensus       165 ~F~~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~  198 (571)
T KOG4441|consen  165 HFAEVSKTEEFLLLSLEELIGLLSSDDLNVDSEE  198 (571)
T ss_pred             HHHHHhccHHhhCCCHHHHHhhccccCCCcCCHH
Confidence                 44499999999999999999999999985

>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG4350|consensus Back     alignment and domain information
>KOG2075|consensus Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4591|consensus Back     alignment and domain information
>KOG4682|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG2838|consensus Back     alignment and domain information
>KOG2716|consensus Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2838|consensus Back     alignment and domain information
>KOG0511|consensus Back     alignment and domain information
>KOG3473|consensus Back     alignment and domain information
>KOG2714|consensus Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG1665|consensus Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2715|consensus Back     alignment and domain information
>KOG0511|consensus Back     alignment and domain information
>KOG1987|consensus Back     alignment and domain information
>KOG1724|consensus Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3840|consensus Back     alignment and domain information
>KOG2723|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
3e4u_A130 Crystal Structure Of The Wild-Type Human Bcl6 BtbPO 1e-05
1r28_A127 Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) B 5e-05
2q81_A119 Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length 4e-04
3m52_A117 Crystal Structure Of The Btb Domain From The Miz-1Z 4e-04
3ohu_A125 Crystal Structure Of The Human Bach2 Poz Domain, Fo 5e-04
3m8v_A124 Crystal Structure Of The Btb Domain From KaisoZBTB3 6e-04
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ DOMAIN Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 6   CLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFL 65
           C+++  H S++   L++    + L DV +  + E      ++AH+ +L ACS  F  +F 
Sbjct: 9   CIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQ-----FRAHKTVLMACSGLFYSIFT 63
Query: 66  ENTHPHPIIFLRD--IHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL 113
           +    +  +   D  I+ +   ++L FMY   +N+++ ++  V+ TA  L
Sbjct: 64  DQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYL 113
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb Domain To 2.2 Angstrom Length = 127 Back     alignment and structure
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length = 119 Back     alignment and structure
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17 Transcription Regulator Length = 117 Back     alignment and structure
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I Length = 125 Back     alignment and structure
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM II Length = 124 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
2vpk_A116 Myoneurin; transcription regulation, transcription 8e-20
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 5e-19
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 5e-19
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 7e-19
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 1e-18
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 2e-18
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 2e-18
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 2e-18
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 4e-18
3b84_A119 Zinc finger and BTB domain-containing protein 48; 5e-18
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 6e-18
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 3e-17
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 4e-17
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 9e-17
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 2e-16
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 5e-16
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 6e-16
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 1e-15
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 6e-15
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 5e-13
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
 Score = 79.2 bits (196), Expect = 8e-20
 Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 8/114 (7%)

Query: 11  NHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHP 70
           +H  +L + L+K  +   L D T+           +KAH+ +L++ S YF  ++   +  
Sbjct: 4   HHCEHLLERLNKQREAGFLCDCTIVI-----GEFQFKAHRNVLASFSEYFGAIYRSTSEN 58

Query: 71  HPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVL---MVRGLCEE 121
           +  +    +     + +L F+Y G +N+   ++K++ + A  L    V   C+ 
Sbjct: 59  NVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKI 112
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 100.0
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.97
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.96
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.96
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.96
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.96
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.96
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.96
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.96
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.96
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.96
2vpk_A116 Myoneurin; transcription regulation, transcription 99.95
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.95
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.95
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.95
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.94
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.93
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.93
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.92
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.9
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.39
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.34
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.1
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.91
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.67
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.56
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.56
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.36
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.05
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 97.86
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 97.74
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 97.51
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 97.39
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 97.36
3kvt_A115 Potassium channel protein SHAW; tetramerization do 97.36
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 97.15
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 93.81
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=100.00  E-value=1.2e-33  Score=219.69  Aligned_cols=181  Identities=17%  Similarity=0.204  Sum_probs=131.8

Q ss_pred             CCCeeeeeeCCChhHHHHHHHHHHhCCCceeEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCC----CCCCCeEEe
Q psy13247          1 MDDEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLEN----THPHPIIFL   76 (187)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~----e~~~~~i~l   76 (187)
                      |+....+++++|+..+++.+++++.++.+|||++.|+|     +.|+|||.||+++|+||++||.++    ++....|.+
T Consensus         3 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~-----~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l   77 (256)
T 3hve_A            3 MAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDG-----EEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIEL   77 (256)
T ss_dssp             -------CCTTTHHHHHHHHHTCCC--CCCCEEEEETT-----EEEEECHHHHHTTCHHHHHTC-----------CEEEC
T ss_pred             CCCCCccCChHHHHHHHHHHHHHHhcCCCcceEEEECC-----EEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEe
Confidence            66778899999999999999999999999999999999     999999999999999999999876    356789999


Q ss_pred             CCCCHHHHHHHhcccccceeccCcccHHHHHHHHhhcCccchHhhcCCCCCCcchhhccCCCCCcccchhHHHHHhhhh-
Q psy13247         77 RDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCEENSPNGAGEILRERASSPSVTKDDVNTRKRKMETG-  155 (187)
Q Consensus        77 ~~~~~~~~~~lL~~~Yt~~~~i~~~~~~~ll~~A~~~~~~~L~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-  155 (187)
                      +++++++|+.+++|+|||++.++.+++.+++.+|++|++++|++.|+.++.... ...++...+..+..+++..+.+.+ 
T Consensus        78 ~~v~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l-~~~n~~~i~~~A~~~~~~~L~~~~~  156 (256)
T 3hve_A           78 EGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCI-AAENCIGIRDFALHYCLHHVHYLAT  156 (256)
T ss_dssp             SSCCHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTC-CSSTTHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhC-CHhhHHHHHHHHHHcCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999965322111 111111223344445555555544 


Q ss_pred             -------hhhcCcccccCCChhHhhhhccCCCccccCCC
Q psy13247        156 -------AQYCDRENYVNSPKLHTSSSMSSSLSEVPAAQ  187 (187)
Q Consensus       156 -------~~~~~~~~f~~l~~~~l~~ils~~~L~v~~~~  187 (187)
                             .++..+++|..||.+.+..+|++++|+|.+|+
T Consensus       157 ~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~~E~  195 (256)
T 3hve_A          157 EYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNER  195 (256)
T ss_dssp             HHHHHHHHHHTTCHHHHSSCHHHHHHHHHCC-------C
T ss_pred             HHHHHHHHHHhCCcchhcCCHHHHHHHHccCCCCCCCHH
Confidence                   44455599999999999999999999998774
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 187
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 3e-17
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 1e-16
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 3e-17
 Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 7   LKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLE 66
           +++  H S++   L++    + L DV +         + ++AH+ +L ACS  F  +F +
Sbjct: 3   IQFTRHASDVLLNLNRLRSRDILTDVVIVV-----SREQFRAHKTVLMACSGLFYSIFTD 57

Query: 67  NT--HPHPIIFLRDIHHKELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCE 120
               +   I    +I+ +   ++L FMY   +N+++ ++  V+ TA  L +  + +
Sbjct: 58  QLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 113
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.96
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.96
d3kvta_103 akv3.1 voltage-gated potassium channel {California 98.19
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.96
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.96
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 97.84
d1t1da_100 Shaker potassium channel {California sea hare (Apl 97.66
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 94.94
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 94.67
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.4e-30  Score=176.38  Aligned_cols=114  Identities=24%  Similarity=0.333  Sum_probs=108.1

Q ss_pred             CeeeeeeCCChhHHHHHHHHHHhCCCceeEEEEeCCCCCcceEEehhhHHhhccCHHHHHhhcCCCCCCCeEEeCCCCHH
Q psy13247          3 DEFCLKWKNHTSNLTDVLSKFLQDESLVDVTLACNWENSDIKTYKAHQMILSACSPYFEKLFLENTHPHPIIFLRDIHHK   82 (187)
Q Consensus         3 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~i~v~~~~~~~~~~~~Hk~vL~~~S~~F~~~~~~~e~~~~~i~l~~~~~~   82 (187)
                      +.+.+++|+|+..+++.+++++.+|.+||+++.|+|     ++|+|||.||+++|+||++||.++   ...+.+++++++
T Consensus         2 ~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~-----~~~~aHk~vLaa~S~~F~~lf~~~---~~~i~~~~v~~~   73 (121)
T d1buoa_           2 GMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDS-----QEFHAHRTVLACTSKMFEILFHRN---SQHYTLDFLSPK   73 (121)
T ss_dssp             CCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESS-----CEEEECHHHHHHHCHHHHHHTTSC---CSEEEECSSCHH
T ss_pred             CeEEEcCCchHHHHHHHHHHHHhcCCcEeEEEEECC-----EEEEEEHHHhcccChhhhhhccCc---cceeecCCCCHH
Confidence            357889999999999999999999999999999999     999999999999999999999754   458999999999


Q ss_pred             HHHHHhcccccceeccCcccHHHHHHHHhhcCccchHhhcCC
Q psy13247         83 ELEVILHFMYRGEVNIKQDSLKQVLETAKVLMVRGLCEENSP  124 (187)
Q Consensus        83 ~~~~lL~~~Yt~~~~i~~~~~~~ll~~A~~~~~~~L~~~c~~  124 (187)
                      +|+.+|+|+|||++.++.+++.+++.+|++|++++|++.|++
T Consensus        74 ~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~L~~~C~~  115 (121)
T d1buoa_          74 TFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLK  115 (121)
T ss_dssp             HHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999955
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure