Psyllid ID: psy13251

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MPVSDLQEFPYPARRFPLHYGTDAVAPSARFELYPALTAPPVSYYDPGYWWKRYRRNADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCCMD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEcccccEEEEEEcccccccEEEEEEEEEEcccccccccccccccccEEEEEEEEEEEEEEEcccccEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEcccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccEEEEEccHHHHcccccEEEEEEccccccccEEEEEEEEEccccccccccccccccccEEEEEEEEEEEEEccccccEEEEEEEccccccc
Coil and Loop (DISEMBL)
mpvsdlqefpyparrfplhygtdavapsarfelypaltappvsyydpgywwkryrrnadrekrqssststftlcptrsqfvmpqaavnnkgnwMYVVNINEVDNRYKQLVKSEVClstecngvcglppgytsrceQKYVQKRLIALQgegnqlytdvfwipsccmd
Flexible Loop (DISEMBL)
mpvsdlqefpyparrfpLHYGTDAVAPSARFElypaltappvsyydpgyWWKRYRRnadrekrqssststftlcptrsqFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIALqgegnqlytdvFWIPSCCMD
Low Complexity Region (SEG)
MPVSDLQEFPYPARRFPLHYGTDAVAPSARFELYPALTAPPVSYYDPGYWWKRYRRNADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCCMD
Disordered region (IsUnstruct)
**********YPARRFPLHYGTDAVAPSARFELYPALTAPPVSYYDPGYWWKRYR***************FTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCC**
Disordered Region (DISOPRED)
***SD**EFPYPARRFPLHYGTDAVAPSARFELYPAL************************************CPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCCMD
Disordered Region (DISEMBL)
MPVSDLQEFPYPARRFPLHYGTDAVAPSARFELYPALTAPPVSYYDPGYWWKRYRRN*************FTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCCMD
Disordered Region (DISPRO)
*****LQEFPYPARRFPLHYGTDAVAPSARFELYPALTAPPVSYYDPGYWWKRYR***************FTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCCMD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPVSDLQEFPYPARRFPLHYGTDAVAPSARFELYPALTAPPVSYYDPGYWWKRYRRNADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCCMD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
P48607	326	Protein spaetzle OS=Droso	no	N/A	0.614	0.312	0.290	8e-07

>sp|P48607|SPZ_DROME Protein spaetzle OS=Drosophila melanogaster GN=spz PE=1 SV=3

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 58  ADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLS 117
            D   R   S   F LC +  + V P+  +     W  +VN +E    YKQ ++ E C  
Sbjct: 215 TDVSSRVGGSDERF-LCRSIRKLVYPKKGLRADDTWQLIVNNDE----YKQAIQIEECEG 269

Query: 118 TE--CNGVCGLPPGYTSRCEQKYVQKRLIALQGEGN-QLYTDVFWIPSCC 164
            +  C+     P  Y   C+Q Y Q+ L +++ +G   +  + F IPSCC
Sbjct: 270 ADQPCDFAANFPQSYNPICKQHYTQQTLASIKSDGELDVVQNSFKIPSCC 319

Component of the extracellular signaling pathway that establishes the dorsal-ventral pathway of the embryo. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Spz C-106 in the hemolymph controls expression of the antifungal peptide Drosomycin (Drs) by acting as a ligand of Tl and inducing an intracellular signaling pathway.
Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
270008141	342	hypothetical protein TcasGA2_TC013304 [T	0.638	0.309	0.700	3e-39
91083457	332	PREDICTED: similar to GA22158-PA [Tribol	0.638	0.319	0.700	4e-39
307213410	320	hypothetical protein EAI_08432 [Harpegna	0.650	0.337	0.614	1e-36
340722269	335	PREDICTED: hypothetical protein LOC10065	0.740	0.367	0.563	5e-34
380029443	344	PREDICTED: uncharacterized protein LOC10	0.674	0.325	0.535	1e-33
350416737	298	PREDICTED: hypothetical protein LOC10074	0.740	0.412	0.563	1e-33
328780611	294	PREDICTED: hypothetical protein LOC72554	0.674	0.380	0.535	3e-33
322787103	283	hypothetical protein SINV_12308 [Solenop	0.638	0.374	0.588	9e-33
307188346	309	hypothetical protein EAG_02047 [Camponot	0.626	0.336	0.613	1e-31
332025531	312	hypothetical protein G5I_05794 [Acromyrm	0.632	0.336	0.588	5e-31

>gi|270008141|gb|EFA04589.1| hypothetical protein TcasGA2_TC013304 [Tribolium castaneum]

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/107 (70%), Positives = 92/107 (85%), Gaps = 1/107 (0%)

Query: 59  DREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLST 118
           +R KRQ++ T   TLC +RSQ++MP+AA+NNKGNWMYVVN+ E+DNR+ QLVKSE C S 
Sbjct: 231 ERTKRQNALTGQ-TLCTSRSQYIMPRAALNNKGNWMYVVNMPELDNRFSQLVKSETCASQ 289

Query: 119 ECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCCM 165
            C+G+CGLP GYTSRCEQKYVQKRL+AL+G GN+LYTDVFW PSCC+
Sbjct: 290 TCSGLCGLPVGYTSRCEQKYVQKRLVALEGAGNELYTDVFWFPSCCV 336

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083457|ref|XP_970793.1| PREDICTED: similar to GA22158-PA [Tribolium castaneum]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 75/107 (70%), Positives = 92/107 (85%), Gaps = 1/107 (0%)

Query: 59  DREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLST 118
           +R KRQ++ T   TLC +RSQ++MP+AA+NNKGNWMYVVN+ E+DNR+ QLVKSE C S 
Sbjct: 221 ERTKRQNALTGQ-TLCTSRSQYIMPRAALNNKGNWMYVVNMPELDNRFSQLVKSETCASQ 279

Query: 119 ECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCCM 165
            C+G+CGLP GYTSRCEQKYVQKRL+AL+G GN+LYTDVFW PSCC+
Sbjct: 280 TCSGLCGLPVGYTSRCEQKYVQKRLVALEGAGNELYTDVFWFPSCCV 326

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213410|gb|EFN88846.1| hypothetical protein EAI_08432 [Harpegnathos saltator]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/109 (61%), Positives = 93/109 (85%), Gaps = 1/109 (0%)

Query: 56  RNADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVC 115
           +++DR KRQS++  T  LCPT++Q+++P+AA+NN+GNWMY+VN+++ DN+Y QLVKSE C
Sbjct: 205 KSSDRVKRQSNA-DTVVLCPTQAQYIVPRAALNNQGNWMYIVNLSDQDNKYTQLVKSEKC 263

Query: 116 LSTECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCC 164
           L+ ECNG+C LP GY SRC+Q++VQKRL+AL+G GN+LYTDVFW P  C
Sbjct: 264 LNDECNGICSLPMGYRSRCQQQFVQKRLVALEGSGNRLYTDVFWFPHSC 312

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722269|ref|XP_003399530.1| PREDICTED: hypothetical protein LOC100652321 [Bombus terrestris]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 90/126 (71%), Gaps = 3/126 (2%)

Query: 39  APPVSYYDPGYWWKRYRRNADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVN 98
           AP  SY +P    K  + +  R KRQS+      LCPT +Q++ P+AA+NN+GNWMYVVN
Sbjct: 205 APRTSYENP--LLKYSKLSKTRNKRQSN-LDAIPLCPTETQYITPRAALNNQGNWMYVVN 261

Query: 99  INEVDNRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVF 158
           + E D +Y Q+VKSE C    CNG+C +P GYTSRC+Q+YVQKRL+AL+G GNQLYTDVF
Sbjct: 262 LQENDRKYSQVVKSEKCTMDVCNGICSVPAGYTSRCQQQYVQKRLVALEGSGNQLYTDVF 321

Query: 159 WIPSCC 164
           W P  C
Sbjct: 322 WFPHGC 327

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029443|ref|XP_003698382.1| PREDICTED: uncharacterized protein LOC100863036 [Apis florea]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 86/112 (76%)

Query: 53  RYRRNADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKS 112
           +Y + + R +++ S     +LCPT +Q++ P+AA+NN+GNWMYVVN+ + + +Y Q+V+S
Sbjct: 225 KYSKLSKRRRKRQSDPDAISLCPTETQYITPRAALNNQGNWMYVVNLEDKNQKYSQVVRS 284

Query: 113 EVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCC 164
           E C  + CNG+C +P GYTSRC+Q+YVQKRL+ALQG GNQLYTD+FW P  C
Sbjct: 285 EKCTMSVCNGICSVPTGYTSRCQQQYVQKRLVALQGNGNQLYTDIFWFPHGC 336

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416737|ref|XP_003491079.1| PREDICTED: hypothetical protein LOC100742433 [Bombus impatiens]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 90/126 (71%), Gaps = 3/126 (2%)

Query: 39  APPVSYYDPGYWWKRYRRNADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVN 98
           AP  SY +P    K  + +  R KRQS+      LCPT +Q++ P+AA+NN+GNWMYVVN
Sbjct: 168 APRTSYENP--LLKYSKLSKTRNKRQSN-LDAIPLCPTETQYITPRAALNNQGNWMYVVN 224

Query: 99  INEVDNRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVF 158
           + E D +Y Q+VKSE C    CNG+C +P GYTSRC+Q+YVQKRL+AL+G GNQLYTDVF
Sbjct: 225 LQENDRKYSQVVKSEKCTMDVCNGICSVPAGYTSRCQQQYVQKRLVALEGSGNQLYTDVF 284

Query: 159 WIPSCC 164
           W P  C
Sbjct: 285 WFPHGC 290

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780611|ref|XP_001121374.2| PREDICTED: hypothetical protein LOC725541 [Apis mellifera]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 85/112 (75%)

Query: 53  RYRRNADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKS 112
           +Y + + R +++ S     +LCPT +Q++ P+AA+NN+GNWMYVVN+ +++ +Y Q+V+S
Sbjct: 175 KYSKLSKRRRKRQSDPDAISLCPTETQYITPRAALNNQGNWMYVVNLEDMNQKYSQVVRS 234

Query: 113 EVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCC 164
           E C    CNG+C +P GYTSRC+Q+YVQKRLIALQG GNQLY D+FW P  C
Sbjct: 235 EKCTMDVCNGICSVPTGYTSRCQQQYVQKRLIALQGNGNQLYADIFWFPHGC 286

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787103|gb|EFZ13324.1| hypothetical protein SINV_12308 [Solenopsis invicta]

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 85/107 (79%), Gaps = 1/107 (0%)

Query: 58  ADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLS 117
            DR KRQS   +  +LCPTR+Q++ P+AA+N +GNWMYVVN+ E  N+Y QLV+SE CL+
Sbjct: 170 GDRVKRQSDPEA-ISLCPTRAQYIAPRAALNKEGNWMYVVNLPEQRNKYSQLVRSETCLN 228

Query: 118 TECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCC 164
             CNG+C +P GY S+C+Q++VQKRLIAL+G GN+LYTD+FW+P  C
Sbjct: 229 DVCNGICSIPEGYRSKCQQQFVQKRLIALEGSGNRLYTDLFWLPHGC 275

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188346|gb|EFN73121.1| hypothetical protein EAG_02047 [Camponotus floridanus]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 83/106 (78%), Gaps = 2/106 (1%)

Query: 59  DREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLST 118
           DR KRQS+      LCPT++Q++ P+AA+NN+GNWMYVVN+    N+Y QLVKSE CL+ 
Sbjct: 198 DRVKRQSNP-DVIALCPTQAQYIAPKAALNNQGNWMYVVNL-PGQNKYTQLVKSERCLNN 255

Query: 119 ECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCC 164
           ECNG+C +P GY S C+Q++VQKRLIAL+G GN+LYTDVFW P  C
Sbjct: 256 ECNGICSIPEGYRSNCQQQFVQKRLIALEGSGNRLYTDVFWFPHGC 301

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025531|gb|EGI65694.1| hypothetical protein G5I_05794 [Acromyrmex echinatior]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 83/107 (77%), Gaps = 2/107 (1%)

Query: 58  ADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLS 117
            DR KRQS S    +LCPTR+Q++ P+AA+N +GNWMYVVNI    N+Y QLV+SE CL+
Sbjct: 200 GDRVKRQSDS-EIISLCPTRAQYIAPRAALNKEGNWMYVVNI-PGQNKYSQLVRSEKCLN 257

Query: 118 TECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCC 164
             C+G+C +P GY SRC+Q++VQKRL+AL+G GN+LYTD+FW P  C
Sbjct: 258 DVCDGICSIPEGYKSRCQQQFVQKRLVALEGSGNRLYTDLFWFPHGC 304

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
FB|FBgn0035379	387	spz5 "spatzle 5" [Drosophila m	0.632	0.271	0.590	7.7e-32
FB|FBgn0003495	326	spz "spatzle" [Drosophila mela	0.608	0.309	0.293	3.3e-08
FB|FBgn0031959	611	spz3 "spatzle 3" [Drosophila m	0.584	0.158	0.324	4.7e-08
FB|FBgn0261526	1042	NT1 "Neurotrophin 1" [Drosophi	0.590	0.094	0.288	8.6e-07

FB|FBgn0035379 spz5 "spatzle 5" [Drosophila melanogaster (taxid:7227)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 65/110 (59%), Positives = 79/110 (71%)

Query:    56 RNADREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVC 115
             +   R KRQS   ST  LC T SQF+ PQAA+N++GNWM+VVN     N  +Q+VK+E+C
Sbjct:   277 KKRSRTKRQSPGRST--LCQTTSQFITPQAALNSRGNWMFVVN---EQNTARQMVKAELC 331

Query:   116 LSTECNGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCCM 165
              S  C+ +C LP GY SRCEQK+VQKRLIALQG G  LYTD FW PSCC+
Sbjct:   332 ASNTCSNLCELPNGYNSRCEQKFVQKRLIALQGNGQNLYTDTFWFPSCCV 381

GO:0005121 "Toll binding" evidence=ISS

GO:0008063 "Toll signaling pathway" evidence=ISS

GO:0005576 "extracellular region" evidence=ISS

GO:0031637 "regulation of neuronal synaptic plasticity in response to neurotrophin" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0010941 "regulation of cell death" evidence=IDA

GO:0021556 "central nervous system formation" evidence=IMP

GO:0008083 "growth factor activity" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

FB|FBgn0003495 spz "spatzle" [Drosophila melanogaster (taxid:7227)]

 Score = 132 (51.5 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 32/109 (29%), Positives = 50/109 (45%)

Query:    59 DREKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLST 118
             D   R   S   F LC +  + V P+  +     W  +VN +E    YKQ ++ E C   
Sbjct:   216 DVSSRVGGSDERF-LCRSIRKLVYPKKGLRADDTWQLIVNNDE----YKQAIQIEECEGA 270

Query:   119 E--CNGVCGLPPGYTSRCEQKYVQKRLIALQGEGN-QLYTDVFWIPSCC 164
             +  C+     P  Y   C+Q Y Q+ L +++ +G   +  + F IPSCC
Sbjct:   271 DQPCDFAANFPQSYNPICKQHYTQQTLASIKSDGELDVVQNSFKIPSCC 319

GO:0007311 "maternal specification of dorsal/ventral axis, oocyte, germ-line encoded" evidence=TAS

GO:0008063 "Toll signaling pathway" evidence=IDA;NAS;TAS

GO:0005576 "extracellular region" evidence=NAS;IDA;TAS

GO:0007310 "oocyte dorsal/ventral axis specification" evidence=IEP

GO:0005121 "Toll binding" evidence=IGI;NAS;TAS;IPI

GO:0009950 "dorsal/ventral axis specification" evidence=IGI;NAS;TAS

GO:0019732 "antifungal humoral response" evidence=IMP

GO:0006967 "positive regulation of antifungal peptide biosynthetic process" evidence=IMP

GO:0006952 "defense response" evidence=IMP;NAS;TAS

GO:0009620 "response to fungus" evidence=TAS

GO:0045087 "innate immune response" evidence=IDA;NAS

GO:0016015 "morphogen activity" evidence=NAS

GO:0000578 "embryonic axis specification" evidence=NAS

GO:0005125 "cytokine activity" evidence=TAS

GO:0050830 "defense response to Gram-positive bacterium" evidence=IMP;TAS

GO:0006955 "immune response" evidence=TAS

GO:0050832 "defense response to fungus" evidence=IMP

GO:0008592 "regulation of Toll signaling pathway" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0031334 "positive regulation of protein complex assembly" evidence=IDA

GO:0008083 "growth factor activity" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009953 "dorsal/ventral pattern formation" evidence=IDA

FB|FBgn0031959 spz3 "spatzle 3" [Drosophila melanogaster (taxid:7227)]

 Score = 135 (52.6 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 38/117 (32%), Positives = 56/117 (47%)

Query:    57 NADRE---KRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSE 113
             NA+R+   K  SS T     C ++ + V P  A N+ G    +VN       ++Q +  E
Sbjct:   502 NANRQPGNKNGSSGTGRLDACESKIEIVTPYWASNSAGKIRAIVNTQH----FEQAIHQE 557

Query:   114 VCLSTE---CNGVCGLPPGYTSRCEQKYVQKRLIALQGEGN--QLYTDVFWIPSCCM 165
             VC +T+   C G CG        CEQKY   RL+A   + +   ++ D F  PSCC+
Sbjct:   558 VCSNTQTPRCEGECG--------CEQKYKWHRLLAYDPDNDCKGIFMDWFLFPSCCV 606

GO:0008063 "Toll signaling pathway" evidence=ISS

GO:0005576 "extracellular region" evidence=ISS

GO:0005121 "Toll binding" evidence=ISS

FB|FBgn0261526 NT1 "Neurotrophin 1" [Drosophila melanogaster (taxid:7227)]

 Score = 126 (49.4 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 30/104 (28%), Positives = 49/104 (47%)

Query:    61 EKRQSSSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLSTEC 120
             +KR+    S   +C +  ++  PQ A +  G W Y+VN  +    + Q ++ E C S   
Sbjct:   496 KKRREDEGSAGGMCQSVVRYARPQKAKSASGEWKYIVNTGQ----HTQTLRLEKC-SNPV 550

Query:   121 NGVCGLPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCC 164
                  L   Y S C Q Y   RL++   +   L+ D+F +P+CC
Sbjct:   551 ESCSYLAQTYRSHCSQVYNYHRLLSWD-KVRGLHVDIFKVPTCC 593


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      166       166   0.00097  107 3  11 22  0.38    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  177 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.38u 0.09s 16.47t   Elapsed:  00:00:03
  Total cpu time:  16.38u 0.09s 16.47t   Elapsed:  00:00:03
  Start:  Thu Aug 15 15:29:05 2013   End:  Thu Aug 15 15:29:08 2013

GO:0005121 "Toll binding" evidence=ISS

GO:0005576 "extracellular region" evidence=ISS

GO:0008063 "Toll signaling pathway" evidence=ISS

GO:0007411 "axon guidance" evidence=IMP

GO:0043523 "regulation of neuron apoptotic process" evidence=IMP

GO:0008083 "growth factor activity" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0031637 "regulation of neuronal synaptic plasticity in response to neurotrophin" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0010941 "regulation of cell death" evidence=IDA

GO:0021556 "central nervous system formation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
PF00243	116	NGF: Nerve growth factor family; InterPro: IPR0020	98.19
PF02035	174	Coagulin: Coagulin; InterPro: IPR000275 Coagulogen	97.43
smart00140	106	NGF Nerve growth factor (NGF or beta-NGF). NGF is	96.39
PF06083	84	IL17: Interleukin-17; InterPro: IPR010345 Interleu	88.13

>PF00243 NGF: Nerve growth factor family; InterPro: IPR002072 During the development of the vertebrate nervous system, many neurons become redundant (because they have died, failed to connect to target cells, etc

Probab=98.19  E-value=1.1e-05  Score=62.73  Aligned_cols=94  Identities=22%  Similarity=0.409  Sum_probs=73.1

Q ss_pred             ccccCCcceeeeee-ceeeeeCCCcEEEEEeccCCCC-ceeeeEEEEeecCC-----ccCCccCCCCCCcCeeEEeeece
Q psy13251         69 STFTLCPTRSQFVM-PQAAVNNKGNWMYVVNINEVDN-RYKQLVKSEVCLST-----ECNGVCGLPPGYTSRCEQKYVQK  141 (166)
Q Consensus        69 ~~~~LC~S~~~~i~-Pk~A~N~~g~Wr~IVNt~e~~n-~y~Q~VRvE~C~~~-----~C~~~~~lp~gY~S~CkQKYv~r  141 (166)
                      ||-..|+|....+. ...|.|..|+-..|+......| .|+|-+..-+|.+.     .|.+++.  ..+.|.|+++..+-
T Consensus         7 ge~sVCdS~S~WV~nk~tA~Di~G~~VtVL~~v~~n~~~~kQyF~EtkC~~~~~~~~gCrGiD~--~hw~S~C~t~~s~V   84 (116)
T PF00243_consen    7 GEYSVCDSVSVWVTNKTTAVDIKGNEVTVLGEVNINNGVYKQYFFETKCRNPNPVKSGCRGIDS--RHWNSYCTTTQSYV   84 (116)
T ss_dssp             SEEESS-EEEEEESHH-EEEBTTS-EEEE-SEEESSSSEEE-EEEEEEESCSSSCTTCSTTB-T--TTEEEEEEEEEEEE
T ss_pred             ccEeecccceeEEcccceeecCCCCEEEEEeeEecCCceEEEEEEEEEEcCCCCCCCCCCCccc--ccCCCEeeccEeEE
Confidence            47899999999997 7899999998888875443322 79999999999872     7988875  46899999999999


Q ss_pred             EEEEEeCCCCcEEEEEEecCCCcC
Q psy13251        142 RLIALQGEGNQLYTDVFWIPSCCM  165 (166)
Q Consensus       142 rLlAld~~g~~l~~D~Fk~PScC~  165 (166)
                      |.|.+|.++ ..--.+..|.++|+
T Consensus        85 rAlt~~~~~-~~~Wr~IrI~tsCv  107 (116)
T PF00243_consen   85 RALTMDDNQ-KVGWRWIRIDTSCV  107 (116)
T ss_dssp             EEEEECSSS-CEEEEEEEEEEEEE
T ss_pred             EEEEEcCCc-ccceeEEEECCceE
Confidence            999998763 36777899999985

) and are eliminated. At the same time, developing neurons send out axon outgrowths that contact their target cells []. Such cells control their degree of innervation (the number of axon connections) by the secretion of various specific neurotrophic factors that are essential for neuron survival. One of these is nerve growth factor (NGF or beta-NGF), a vertebrate protein that stimulates division and differentiation of sympathetic and embryonic sensory neurons [, ]. NGF is mostly found outside the central nervous system (CNS), but slight traces have been detected in adult CNS tissues, although a physiological role for this is unknown []; it has also been found in several snake venoms [, ]. NGF is a protein of about 120 residues that is cleaved from a larger precursor molecule. It contains six cysteines all involved in intrachain disulphide bonds. A schematic representation of the structure of NGF is shown below: +------------------------+ | | | | xxxxxxCxxxxxxxxxxxxxxxxxxxxxCxxxxCxxxxxCxxxxxxxxxxxxxCxCxxxx | | | | +--------------------------|-----+ | +---------------------+ 'C': conserved cysteine involved in a disulphide bond. This entry also contains NGF-related proteins such as neutrophin 3, which promotes the survival of visceral and proprioceptive sensory neurons, and brain-derived neurotrophin, which promotes the survival of neuronal populations that are located either in the central nervous system or directly connected to it [, ].; GO: 0005102 receptor binding; PDB: 1NT3_A 1BND_B 3BUK_A 1B8K_A 1B98_A 1HCF_A 1WWW_V 1SG1_A 2IFG_E 1BTG_A ....

>PF02035 Coagulin: Coagulin; InterPro: IPR000275 Coagulogen is a gel-forming protein of hemolymph that hinders the spread of invaders by immobilising them [, ]

Probab=97.43  E-value=0.0011  Score=53.69  Aligned_cols=78  Identities=22%  Similarity=0.460  Sum_probs=52.4

Q ss_pred             cCCcceeeeeeceeeeeCCCcEEEEEeccCCCCceeeeEEEEeecC---CccCCccCCCCCCcCeeEEeeeceEEEEEeC
Q psy13251         72 TLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLS---TECNGVCGLPPGYTSRCEQKYVQKRLIALQG  148 (166)
Q Consensus        72 ~LC~S~~~~i~Pk~A~N~~g~Wr~IVNt~e~~n~y~Q~VRvE~C~~---~~C~~~~~lp~gY~S~CkQKYv~rrLlAld~  148 (166)
                      .-||..++---|..+.++.|+.++|||.+.-  .|.|-|-.-+|..   ..|        ||+.+|.|+=+.-||+++|-
T Consensus        84 secpvstrdcepvfgyt~a~efrvivqapra--gfrqcvwqhkcraygsn~c--------~~~grctqqrsvvrlvtynl  153 (174)
T PF02035_consen   84 SECPVSTRDCEPVFGYTVAGEFRVIVQAPRA--GFRQCVWQHKCRAYGSNNC--------GFNGRCTQQRSVVRLVTYNL  153 (174)
T ss_dssp             SB--EEEE----SEEE-TTS-EEEE--BCCC--TB-B---EEEET-TSSSB---------SSS-EE--EEEEEEEEEEET
T ss_pred             ccCCcccccccccccceecceEEEEEeCchh--hHHHHHHHhhhcccccccc--------CcCceeccceeEEEEEEEec
Confidence            4699999999999999999999999999965  7999999999983   245        57789999999999999999


Q ss_pred             CCCcEEEEEEe
Q psy13251        149 EGNQLYTDVFW  159 (166)
Q Consensus       149 ~g~~l~~D~Fk  159 (166)
                      ..+++.-+.|+
T Consensus       154 ek~~flce~~r  164 (174)
T PF02035_consen  154 EKDGFLCESFR  164 (174)
T ss_dssp             TTTEEEEEEEE
T ss_pred             ccCcEeehhhh
Confidence            98888888887

The protein contains a single 175- residue polypeptide chain; this is cleaved after Arg-18 and Arg-46 by a clotting enzyme contained in the hemocyte and activated by a bacterial endotoxin (lipopolysaccharide). Cleavage releases two chains of coagulin, A and B, linked by two disulphide bonds, together with the peptide C [, ]. Gel formation results from interlinking of coagulin molecules. Secondary structure prediction suggests the C peptide forms an alpha- helix, which is released during the proteolytic conversion of coagulogen to coagulin gel []. The beta-sheet structure and 16 half-cystines found in the molecule appear to yield a compact protein stable to acid and heat. Mammalian blood coagulation is based on the proteolytically induced polymerisation of fibrinogens. Initially, fibrin monomers noncovalently interact with each other. The resulting homopolymers are further stabilised when the plasma transglutaminase (TGase) intermolecularly cross-links epsilon-(gamma-glutamyl)lysine bonds. In crustaceans, hemolymph coagulation depends on the TGase-mediated cross-linking of specific plasma-clotting proteins, but without the proteolytic cascade. In horseshoe crabs, the proteolytic coagulation cascade triggered by lipopolysaccharides and beta-1,3-glucans leads to the conversion of coagulogen into coagulin, resulting in noncovalent coagulin homopolymers through head-to-tail interaction. Horseshoe crab TGase, however, does not cross-link coagulins intermolecularly. Recently, we found that coagulins are cross-linked on hemocyte cell surface proteins called proxins. This indicates that a cross-linking reaction at the final stage of hemolymph coagulation is an important innate immune system of horseshoe crabs [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region; PDB: 1AOC_A.

>smart00140 NGF Nerve growth factor (NGF or beta-NGF)

Probab=96.39  E-value=0.013  Score=45.18  Aligned_cols=94  Identities=21%  Similarity=0.380  Sum_probs=77.9

Q ss_pred             ccccCCcceeeeee-ceeeeeCCCcEEEEEeccCCCC-ceeeeEEEEeecCC-----ccCCccCCCCCCcCeeEEeeece
Q psy13251         69 STFTLCPTRSQFVM-PQAAVNNKGNWMYVVNINEVDN-RYKQLVKSEVCLST-----ECNGVCGLPPGYTSRCEQKYVQK  141 (166)
Q Consensus        69 ~~~~LC~S~~~~i~-Pk~A~N~~g~Wr~IVNt~e~~n-~y~Q~VRvE~C~~~-----~C~~~~~lp~gY~S~CkQKYv~r  141 (166)
                      ||-..|.|....+. =..|.+..|+=..|+.....+| .|+|-.-..+|.++     .|.+++.  ..++|.|+-+=.+=
T Consensus         4 GE~sVCDS~S~WV~nKt~a~Di~G~~VtVL~~v~~nn~~~kQyF~ET~C~~~~~~~sgCrGID~--rhWnS~C~ttqtfV   81 (106)
T smart00140        4 GEYSVCDSISVWVTDKTTATDISGNEVTVLGEVPVNNGPLKQYFYETRCKSPNPVKSGCRGIDS--RHWNSQCKTTQTYV   81 (106)
T ss_pred             cceeeccceeeEEeccCEEEecCCCEEEEEEEEEeCCceEEEEEEEeecCCCCCcCCCccCccc--ccccccccccchhh
Confidence            47889999999998 7778999999998877665534 89999998889973     6998875  57899999998999


Q ss_pred             EEEEEeCCCCcEEEEEEecCCCcC
Q psy13251        142 RLIALQGEGNQLYTDVFWIPSCCM  165 (166)
Q Consensus       142 rLlAld~~g~~l~~D~Fk~PScC~  165 (166)
                      |.|..+.++ .+.-.+.+|=++|+
T Consensus        82 rALT~~~~~-~~~Wr~IrI~taCv  104 (106)
T smart00140       82 RALTSDANK-RVGWRFIRIDTACV  104 (106)
T ss_pred             hhhhhccCc-eeeEEEEEEcceee
Confidence            999988653 47777888888885

NGF is important for the development and maintenance of the sympathetic and sensory nervous systems.

>PF06083 IL17: Interleukin-17; InterPro: IPR010345 Interleukins (IL) are a group of cytokines that play an important role in the immune system

Probab=88.13  E-value=3.2  Score=30.34  Aligned_cols=71  Identities=14%  Similarity=0.241  Sum_probs=48.2

Q ss_pred             cEEEEEeccCCCCceeeeEEEEeecCCccCCccCCCCCCcCeeEEeeeceEEEEEe--CCC--CcEEEEEEecCCCc
Q psy13251         92 NWMYVVNINEVDNRYKQLVKSEVCLSTECNGVCGLPPGYTSRCEQKYVQKRLIALQ--GEG--NQLYTDVFWIPSCC  164 (166)
Q Consensus        92 ~Wr~IVNt~e~~n~y~Q~VRvE~C~~~~C~~~~~lp~gY~S~CkQKYv~rrLlAld--~~g--~~l~~D~Fk~PScC  164 (166)
                      -|.|++|.+.+  .|.|.|-.-.|+...|-...+.-..+.-.|+.-|.....|--.  ..+  ..+..+..++|=.|
T Consensus         6 PW~y~~~~d~~--R~P~~i~eA~Clc~gCi~~~~g~e~~~~~svPI~~~i~VLrR~~~~~~~~~~y~~~~~~V~VGC   80 (84)
T PF06083_consen    6 PWTYRINHDPN--RIPSVIAEARCLCSGCINPQTGQEDHSLNSVPIYQEILVLRRECPCAGGRYSYRLEYEKVTVGC   80 (84)
T ss_dssp             -EEEEEEE-TT--CCSSEEEEEEES-SSEE-TT-SSEETTSEEEEEEEEEEEEEEE--SSCCG-EEEEEEEEEEEEE
T ss_pred             CeeeEECCCCc--CCCCcccEEEEecCCCCCccCCCcCCCeEEEEEEEEEEEEEEEecCCCCccEEEEEEEEeCEEe
Confidence            59999999975  9999999999998888544333455666788877766666666  222  33567777777666

They modulate inflammation and immunity by regulating growth, mobility and differentiation of lymphoid and other cells. Interleukin-17 (IL-17) is a potent proinflammatory cytokine produced by activated memory T cells []. The IL-17 family (of which there are 6 known members, termed IL-17A to IL-17F) is thought to represent a distinct signalling system that appears to have been highly conserved across vertebrate evolution []. Family members play an active role in inflammatory diseases, autoimmune diseases and cancer []. ; GO: 0005125 cytokine activity, 0006954 inflammatory response, 0005576 extracellular region; PDB: 2VXS_C 1JPY_Y 3JVF_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	166
3e07_A	114	Crystal Structure Of Spatzle Cystine Knot Length =		8e-07

>pdb|3E07|A Chain A, Crystal Structure Of Spatzle Cystine Knot Length = 114

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 73  LCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLSTE--CNGVCGLPPGY 130
           LC +  + V P+  +     W  +VN +E    YKQ ++ E C   +  C+     P  Y
Sbjct: 9   LCRSIRKLVYPKKGLRADDTWQLIVNNDE----YKQAIQIEECEGADQPCDFAANFPQSY 64
Query: 131 TSRCEQKYVQKRLIALQGEGN-QLYTDVFWIPSCC 164
              C+Q Y Q+ L +++ +G   +  + F IPSCC
Sbjct: 65  NPICKQHYTQQTLASIKSDGELDVVQNSFKIPSCC 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	166
3e07_A	114	Protein spaetzle; cystine knot, TOLL ligand, antim	1e-32

>3e07_A Protein spaetzle; cystine knot, TOLL ligand, antimicrobial, cytokine, developm protein, fungicide, glycoprotein, secreted; 2.40A {Drosophila melanogaster} Length = 114

 Score =  111 bits (278), Expect = 1e-32
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 66  SSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCL--STECNGV 123
             +    LC +  + V P+  +     W  +VN +E    YKQ ++ E C      C+  
Sbjct: 2   GGSDERFLCRSIRKLVYPKKGLRADDTWQLIVNNDE----YKQAIQIEECEGADQPCDFA 57

Query: 124 CGLPPGYTSRCEQKYVQKRLIALQGEGN-QLYTDVFWIPSCC 164
              P  Y   C+Q Y Q+ L +++ +G   +  + F IPSCC
Sbjct: 58  ANFPQSYNPICKQHYTQQTLASIKSDGELDVVQNSFKIPSCC 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
3e07_A	114	Protein spaetzle; cystine knot, TOLL ligand, antim	100.0
4ec7_A	116	VNGF, venom nerve growth factor; cobra NGF, unknow	99.49
1b8k_A	119	NT3, protein (neurotrophin-3); complex (growth fac	98.21
1bnd_A	119	BDNF, brain derived neurotrophic factor; complex (	98.15
1www_V	120	Beta-NGF, protein (nerve growth factor); complex,	98.13
1hcf_A	130	Neurotrophin-4; transferase/hormone, complex(trans	98.01
3ij2_A	230	Beta-NGF, beta-nerve growth factor; receptor and l	97.69
1aoc_A	175	Coagulogen; coagulation factor, clottable protein,	97.43

>3e07_A Protein spaetzle; cystine knot, TOLL ligand, antimicrobial, cytokine, developm protein, fungicide, glycoprotein, secreted; 2.40A {Drosophila melanogaster}

Probab=100.00  E-value=3.7e-41  Score=257.18  Aligned_cols=95  Identities=29%  Similarity=0.676  Sum_probs=75.3

Q ss_pred             CCCccccCCcceeeeeeceeeeeCCCcEEEEEeccCCCCceeeeEEEEeecC--CccCCccCCCCCCcCeeEEeeeceEE
Q psy13251         66 SSTSTFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLS--TECNGVCGLPPGYTSRCEQKYVQKRL  143 (166)
Q Consensus        66 ~~d~~~~LC~S~~~~i~Pk~A~N~~g~Wr~IVNt~e~~n~y~Q~VRvE~C~~--~~C~~~~~lp~gY~S~CkQKYv~rrL  143 (166)
                      ++| +++||+|++++|+|++|+|++|+|++|||++    +|+|+||+|+|++  .+|+++++||.||+|+|+|||++|||
T Consensus         3 ~~d-e~~lC~S~~~~i~P~~A~n~~g~W~~IVN~~----~y~Q~vriE~C~~~g~~C~~~~~~p~~Y~s~C~QkY~~~rL   77 (114)
T 3e07_A            3 GSD-ERFLCRSIRKLVYPKKGLRADDTWQLIVNND----EYKQAIQIEECEGADQPCDFAANFPQSYNPICKQHYTQQTL   77 (114)
T ss_dssp             --C-CEESSCEEEEEECCCC--------------C----CCEEEEEEEEESSTTSBCTTGGGSCTTSEEEEEEEEEECEE
T ss_pred             CCC-ccccCCCEeEEEcchhhccCCCCEEEEEeCC----CcEEEEEEEEeCCCCCccccccccCCCCCCeEeEEecEEEE
Confidence            344 8999999999999999999999999999998    7999999999998  49999999999999999999999999


Q ss_pred             EEEeCCCC-cEEEEEEecCCCcC
Q psy13251        144 IALQGEGN-QLYTDVFWIPSCCM  165 (166)
Q Consensus       144 lAld~~g~-~l~~D~Fk~PScC~  165 (166)
                      ||+|++|+ ++++|+|||||||+
T Consensus        78 la~d~~~~~~~~~d~Fk~PScC~  100 (114)
T 3e07_A           78 ASIKSDGELDVVQNSFKIPSCCK  100 (114)
T ss_dssp             EEECTTSCEEEECCSCEEEEEEE
T ss_pred             EEECCCCceeeEEEEEcCCcceE
Confidence            99999976 69999999999996

>4ec7_A VNGF, venom nerve growth factor; cobra NGF, unknown lipid, hormone; HET: L44; 2.60A {Naja atra}

Probab=99.49  E-value=7.9e-14  Score=106.41  Aligned_cols=93  Identities=24%  Similarity=0.444  Sum_probs=81.3

Q ss_pred             ccccCCcceeeeeeceeeeeCCCcEEEEEeccCCCC-ceeeeEEEEeecCC-----ccCCccCCCCCCcCeeEEeeeceE
Q psy13251         69 STFTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDN-RYKQLVKSEVCLST-----ECNGVCGLPPGYTSRCEQKYVQKR  142 (166)
Q Consensus        69 ~~~~LC~S~~~~i~Pk~A~N~~g~Wr~IVNt~e~~n-~y~Q~VRvE~C~~~-----~C~~~~~lp~gY~S~CkQKYv~rr  142 (166)
                      ||..+|+|...++.|..|.|.+|+|..|++....+| .|+|.+..++|...     .|.+++.  ..|.|+|+||+.|.|
T Consensus         9 ge~sVCdS~s~WV~~~~A~di~G~~V~vl~~v~~~~~~~kQyF~et~C~~~~~~~~~Crgid~--~~w~S~C~~k~s~vr   86 (116)
T 4ec7_A            9 GEHSVCDSVSAWVTKTTATDIKGNTVTVMENVNLDNKVYKEYFFETKCKNPNPEPSGCRGIDS--SHWNSYCTETDTFIK   86 (116)
T ss_dssp             CCEESSCEEEEEECCSEEEBTTSCEEEECSEEEETTEEEECCEEEEEESCSCSBTTBSTTBCT--TTEEEEEEEEEEEEE
T ss_pred             ccCcccCCcEEEEccCccEecCCCEEEEEEEEecCCceEEEEEEEEEeCCCCCCCCCCcceeC--CcccCEEEeeEeEEE
Confidence            478999999999999999999999999988775533 79999999999852     6998775  468999999999999


Q ss_pred             EEEEeCCCCcEEEEEEecCCCcC
Q psy13251        143 LIALQGEGNQLYTDVFWIPSCCM  165 (166)
Q Consensus       143 LlAld~~g~~l~~D~Fk~PScC~  165 (166)
                      +|+.|.  +...-++++||++|+
T Consensus        87 Alt~~~--~~~~w~~IrI~tsCv  107 (116)
T 4ec7_A           87 ALTMEG--NQASWRFIRIETACV  107 (116)
T ss_dssp             EEEEET--TEEEEEEEEEEEEEE
T ss_pred             EEEEeC--CcccceEEEeCCceE
Confidence            999995  357788999999996

>1b8k_A NT3, protein (neurotrophin-3); complex (growth factor/growth factor), hormone/growth factor complex; 2.15A {Homo sapiens} SCOP: g.17.1.3 PDB: 1nt3_A 3buk_A* 1bnd_B

Probab=98.21  E-value=7.2e-06  Score=62.95  Aligned_cols=94  Identities=18%  Similarity=0.369  Sum_probs=75.4

Q ss_pred             ccccCCcceeeeeece-eeeeCCCcEEEEEeccCCCC-ceeeeEEEEeecCC-----ccCCccCCCCCCcCeeEEeeece
Q psy13251         69 STFTLCPTRSQFVMPQ-AAVNNKGNWMYVVNINEVDN-RYKQLVKSEVCLST-----ECNGVCGLPPGYTSRCEQKYVQK  141 (166)
Q Consensus        69 ~~~~LC~S~~~~i~Pk-~A~N~~g~Wr~IVNt~e~~n-~y~Q~VRvE~C~~~-----~C~~~~~lp~gY~S~CkQKYv~r  141 (166)
                      ||-..|+|....|.=+ .|.+..|+-..|+......| .|+|-+-..+|.++     .|.+++.  ..+.|.|+|+..+-
T Consensus         9 Ge~sVCdS~s~WV~~kt~a~Di~G~~VtVl~~v~~~~~~~kQyF~ET~C~~~~~~~~gCrGID~--rhwnS~C~tt~SyV   86 (119)
T 1b8k_A            9 GEYSVCDSESLWVTDKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDD--KHWNSQCKTSQTYV   86 (119)
T ss_dssp             --CCSSCEEEEEECCCCEEEBTTSCEEEECSBC------CBCCEEEEEECC------CCTTCCC--SSCCCEEEEEEEEE
T ss_pred             CccccccCeeEeEccCCEEEecCCCEEEEEEEEEcCCCceEEEEEEEEeCCCCCCCCCccCEec--ccccCeeeCcEEEE
Confidence            3788999999999965 89999999999977664423 79999999999973     7998885  47899999999999


Q ss_pred             EEEEEeCCCCcEEEEEEecCCCcC
Q psy13251        142 RLIALQGEGNQLYTDVFWIPSCCM  165 (166)
Q Consensus       142 rLlAld~~g~~l~~D~Fk~PScC~  165 (166)
                      |.|..|.++ ...-.+.+|.++|+
T Consensus        87 rALt~~~~~-~~~Wr~IRI~tsCv  109 (119)
T 1b8k_A           87 RALTSENNK-LVGWRWIRIDTSCV  109 (119)
T ss_dssp             EEEEESSSS-CCEEEEEEEEEEEE
T ss_pred             EEEEEcCCC-eeeEEEEEeCcceE
Confidence            999998653 36667889999995

>1bnd_A BDNF, brain derived neurotrophic factor; complex (growth factor-growth factor) complex; 2.30A {Homo sapiens} SCOP: g.17.1.3 PDB: 1b8m_A

Probab=98.15  E-value=9.9e-06  Score=62.21  Aligned_cols=94  Identities=19%  Similarity=0.383  Sum_probs=79.1

Q ss_pred             ccccCCcceeeeee---ceeeeeCCCcEEEEEeccCC-CCceeeeEEEEeecCC-----ccCCccCCCCCCcCeeEEeee
Q psy13251         69 STFTLCPTRSQFVM---PQAAVNNKGNWMYVVNINEV-DNRYKQLVKSEVCLST-----ECNGVCGLPPGYTSRCEQKYV  139 (166)
Q Consensus        69 ~~~~LC~S~~~~i~---Pk~A~N~~g~Wr~IVNt~e~-~n~y~Q~VRvE~C~~~-----~C~~~~~lp~gY~S~CkQKYv  139 (166)
                      ||-..|+|....|.   =..|.+..|+-..|+..... .+.|+|-+-..+|.++     .|.+++.  ..+.|.|+++..
T Consensus         8 ge~sVCdS~s~WV~~~~kttA~Di~G~~VtVl~~v~~~n~~~kQyF~ET~C~~~~~~~~gCrGID~--rhwnS~C~ttqS   85 (119)
T 1bnd_A            8 GQLSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDK--RHWNSQCRTTQS   85 (119)
T ss_dssp             CCEESSCEEEEEEEHHHHCEEEBTTSCEEEECSEEECSSSEEECEEEEEEECTTSGGGSSCTTBCT--TTEEEEEEEEEE
T ss_pred             cccccccCeeeeeecCCcCEEEecCCCEEEEEEEEecCCCceEEEEEEEEeCCCCCCCCCccCEec--ccccceecCcee
Confidence            47899999999997   47999999999988643322 1279999999999974     6999886  478999999999


Q ss_pred             ceEEEEEeCCCCcEEEEEEecCCCcC
Q psy13251        140 QKRLIALQGEGNQLYTDVFWIPSCCM  165 (166)
Q Consensus       140 ~rrLlAld~~g~~l~~D~Fk~PScC~  165 (166)
                      |-|.|..|..+ .+.-++.+|.++|+
T Consensus        86 yVrALt~~~~~-~v~Wr~IRI~tsCv  110 (119)
T 1bnd_A           86 YVRALTMDSKK-RIGWRFIRIDTSCV  110 (119)
T ss_dssp             EEEEEEECTTC-CEEEEEEEEEEEEE
T ss_pred             eeeeeeecCCc-eeeEEEEEECCceE
Confidence            99999998764 57888999999996

>1www_V Beta-NGF, protein (nerve growth factor); complex, cysteine knot, immunoglobulin like domain; 2.20A {Homo sapiens} SCOP: g.17.1.3 PDB: 1sg1_A 2ifg_E* 1sgf_B* 1btg_A 1bet_A

Probab=98.13  E-value=1.1e-05  Score=62.10  Aligned_cols=93  Identities=20%  Similarity=0.405  Sum_probs=78.2

Q ss_pred             ccccCCcceeeee-eceeeeeCCCcEEEEEeccCC-CCceeeeEEEEeecCC-----ccCCccCCCCCCcCeeEEeeece
Q psy13251         69 STFTLCPTRSQFV-MPQAAVNNKGNWMYVVNINEV-DNRYKQLVKSEVCLST-----ECNGVCGLPPGYTSRCEQKYVQK  141 (166)
Q Consensus        69 ~~~~LC~S~~~~i-~Pk~A~N~~g~Wr~IVNt~e~-~n~y~Q~VRvE~C~~~-----~C~~~~~lp~gY~S~CkQKYv~r  141 (166)
                      |+-..|+|....| -...|.+..|+-..|+..... .+.|+|-+..-+|.+.     .|.+++.  ..+.|.|+++-.+-
T Consensus        10 ge~sVCdS~s~WV~nkttA~Di~G~~VtVl~~v~~n~~~~kQyF~ET~C~~~~~~~~gCrGiD~--rhwnS~C~tt~t~V   87 (120)
T 1www_V           10 GEFSVCDSVSVWVGDKTTATDIKGKEVMVLGEVNINNSVFKQYFFETKCRDPNPVDSGCRGIDS--KHWNSYCTTTHTFV   87 (120)
T ss_dssp             SCEESSCEEEEEECCCCEEEBTTSCEEEECSEEESSSSEEECCEEEEEECC------CCTTBCT--TTEEEEEEEEEEEE
T ss_pred             cccccccCeeeEEcCCCEEEccCCCEEEEEEEEecCCceEEEEEEEEEeCCCCCCCCCccceec--cccccEecccEEEE
Confidence            3678999999999 589999999998888665433 2389999999999962     7998875  47899999999999


Q ss_pred             EEEEEeCCCCcEEEEEEecCCCcC
Q psy13251        142 RLIALQGEGNQLYTDVFWIPSCCM  165 (166)
Q Consensus       142 rLlAld~~g~~l~~D~Fk~PScC~  165 (166)
                      |+|..|.+  .+--++.+|.++|+
T Consensus        88 rAlt~~~~--~~~Wr~IrI~tsCv  109 (120)
T 1www_V           88 KALTMDGK--QAAWRFIRIDTACV  109 (120)
T ss_dssp             EEEEECSS--SEEEEEEEEEEEEE
T ss_pred             EEEEEeCC--ceeeEEEEECCeeE
Confidence            99999863  57788999999995

>1hcf_A Neurotrophin-4; transferase/hormone, complex(transferase/growth factor), neurotrophin-4/5, TRKB receptor, NGF-beta superfamily; 2.7A {Homo sapiens} SCOP: g.17.1.3 PDB: 1b98_A 1b8m_B

Probab=98.01  E-value=3e-05  Score=60.34  Aligned_cols=94  Identities=20%  Similarity=0.358  Sum_probs=80.1

Q ss_pred             ccccCCcceeeeee-ceeeeeCCCcEEEEEecc-CC-CCceeeeEEEEeecCC------------ccCCccCCCCCCcCe
Q psy13251         69 STFTLCPTRSQFVM-PQAAVNNKGNWMYVVNIN-EV-DNRYKQLVKSEVCLST------------ECNGVCGLPPGYTSR  133 (166)
Q Consensus        69 ~~~~LC~S~~~~i~-Pk~A~N~~g~Wr~IVNt~-e~-~n~y~Q~VRvE~C~~~------------~C~~~~~lp~gY~S~  133 (166)
                      ||...|+|....|. =..|.+..|+-..|+... .. .+.|+|-+-..+|.+.            .|.+++.  ..+.|.
T Consensus        12 ge~sVCdS~s~WV~nkttA~Di~G~~VtVL~~v~~~nn~~~kQyF~ET~Cr~~~~~~g~~~~~~sgCrGID~--rhwnS~   89 (130)
T 1hcf_A           12 GELAVCDAVSGWVTDRRTAVDLRGREVEVLGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDR--RHWVSE   89 (130)
T ss_dssp             CCEESSCEEEEEECCCCEEEBTTSCEEEECSEEECSSSSEEECCEEEEEECCC------CCSBSSCCTTBCT--TTEEEE
T ss_pred             CcccccccEeEEeccccEEEecCCCEEEEeeeeecCCCcceEEEEEEEEecCCcccccCCCcCCCCccCccc--ccccce
Confidence            47899999999998 889999999999997766 43 2389999999999881            6998885  578999


Q ss_pred             eEEeeeceEEEEEeCCCCcEEEEEEecCCCcC
Q psy13251        134 CEQKYVQKRLIALQGEGNQLYTDVFWIPSCCM  165 (166)
Q Consensus       134 CkQKYv~rrLlAld~~g~~l~~D~Fk~PScC~  165 (166)
                      |+++..|-|.|..|..+ ..--.+.+|.++|+
T Consensus        90 C~tt~SyVrALt~~~~~-~~~Wr~IRI~taCv  120 (130)
T 1hcf_A           90 CKAKQSYVRALTADAQG-RVGWRWIRIDTACV  120 (130)
T ss_dssp             EEEEEEEEEEEEECSSC-CEEEEEEEEEEEEE
T ss_pred             eeccEEEEEEEEEcCCC-cceEEEEEeCCccE
Confidence            99999999999998754 57778899999995

>3ij2_A Beta-NGF, beta-nerve growth factor; receptor and ligand, cleavage on PAIR of basic residues; 3.75A {Mus musculus}

Probab=97.69  E-value=0.00011  Score=61.66  Aligned_cols=105  Identities=18%  Similarity=0.338  Sum_probs=79.6

Q ss_pred             cccccccc-C---CCCccccCCcceeeeee-ceeeeeCCCcEEEEEeccCCCC-ceeeeEEEEeecCC-----ccCCccC
Q psy13251         57 NADREKRQ-S---SSTSTFTLCPTRSQFVM-PQAAVNNKGNWMYVVNINEVDN-RYKQLVKSEVCLST-----ECNGVCG  125 (166)
Q Consensus        57 ~~~~~kR~-~---~~d~~~~LC~S~~~~i~-Pk~A~N~~g~Wr~IVNt~e~~n-~y~Q~VRvE~C~~~-----~C~~~~~  125 (166)
                      ...|.||. .   ...||-..|+|....|. -..|.+..|+-..|+......| .|+|-+-..+|.+.     .|.+++.
T Consensus        97 rt~R~KR~a~~~~~~RGE~SVCDS~S~WV~nKttA~Di~G~~VtVL~ev~~n~~~~kQyFyETkC~~~~~~~~gCrGID~  176 (230)
T 3ij2_A           97 RTHRSAASSTHPVFHMGEFSVCDSVSVWVGDKTTATDIKGKEVTVLAEVNINNSVFRQYFFETKCRASNPVESGCRGIDS  176 (230)
T ss_dssp             --------------CCSCEESSCEEEEECCCCCEEEBTTSCEEEECCCCCTTSCCCCCCCEEEEESCSCSBTTBSTTBCT
T ss_pred             ccccceecccCCcccccccccccceeeeeccCCeeeecCCCEEEEEEEEecCCcceeEEEEEEecCCCCCCCCCccCeec
Confidence            44566777 2   23568999999999998 5589999999999988775523 89999999999873     5998885


Q ss_pred             CCCCCcCeeEEeeeceEEEEEeCCCCcEEEEEEecCCCcC
Q psy13251        126 LPPGYTSRCEQKYVQKRLIALQGEGNQLYTDVFWIPSCCM  165 (166)
Q Consensus       126 lp~gY~S~CkQKYv~rrLlAld~~g~~l~~D~Fk~PScC~  165 (166)
                        ..+.|.|+++..|=|.|+.|.+  ..--.+.+|=++|+
T Consensus       177 --rhWnS~CkttqSfVrALT~d~~--~~~Wr~IRIdTsCv  212 (230)
T 3ij2_A          177 --KHWNSYCTTTHTFVKALTTDEK--QAAWRFIRIDTACV  212 (230)
T ss_dssp             --TTEEEEEEEEEEEEEEEEEBTT--BCCEEEEEEEEEEE
T ss_pred             --ccccccccCceeEEEEEEEcCC--cceeEEEEeCceeE
Confidence              4789999999999999999853  45567788888885

>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot superfamily; 2.00A {Tachypleus tridentatus} SCOP: g.17.1.5

Probab=97.43  E-value=0.00055  Score=54.36  Aligned_cols=79  Identities=23%  Similarity=0.426  Sum_probs=70.5

Q ss_pred             ccCCcceeeeeeceeeeeCCCcEEEEEeccCCCCceeeeEEEEeecCC--ccCCccCCCCCCcCeeEEeeeceEEEEEeC
Q psy13251         71 FTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLST--ECNGVCGLPPGYTSRCEQKYVQKRLIALQG  148 (166)
Q Consensus        71 ~~LC~S~~~~i~Pk~A~N~~g~Wr~IVNt~e~~n~y~Q~VRvE~C~~~--~C~~~~~lp~gY~S~CkQKYv~rrLlAld~  148 (166)
                      ..-||..++---|..+.++.|+.|+|||.+.-  .|.|-|-.-+|...  .|        ||+.+|.|+=+.-||+++|-
T Consensus        85 ~secpvstrdcepvfgyt~a~efrvivqapra--gfrqcvwqhkcrygsn~c--------~~~grctqqrsvvrlvtynl  154 (175)
T 1aoc_A           85 KSECPVSTRDCEPVFGYTVAGEFRVIVQAPRA--GFRQCVWQHKCRFGSNSC--------GYNGRCTQQRSVVRLVTYNL  154 (175)
T ss_dssp             SSBCCEEEECCCCSEEEBTTCCEEEECCBTTT--TBCBCCCEEEETTSSCBC--------SSSCEECCEEEEEEEEEEET
T ss_pred             cccCCcccccccccccceecceEEEEEeCchh--hhHHHHHhhhcccccccc--------CcCceeccceeEEEEEEEec
Confidence            35699999999999999999999999999965  79999999999864  44        67889999999999999999


Q ss_pred             CCCcEEEEEEe
Q psy13251        149 EGNQLYTDVFW  159 (166)
Q Consensus       149 ~g~~l~~D~Fk  159 (166)
                      ..+++.-+.|+
T Consensus       155 ek~~flce~~r  165 (175)
T 1aoc_A          155 EKDGFLCESFR  165 (175)
T ss_dssp             TTTEEEEEEEE
T ss_pred             ccCcEeehhhh
Confidence            98888888887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d1bnda_	109	Brain-derived neurotrophic factor, BDNF {Human (Ho	98.26
d1bndb_	108	Neurotrophin 3, NT3 {Human (Homo sapiens) [TaxId:	98.01
d1beta_	107	beta-Nerve growth factor {Mouse (Mus musculus) [Ta	98.0
d1hcfa_	127	Neurotrophin 4, NT4 {Human (Homo sapiens) [TaxId:	97.39
d1aoca_	175	Coagulogen {Japanese horseshoe crab (Tachypleus tr	97.38

>d1bnda_ g.17.1.3 (A:) Brain-derived neurotrophic factor, BDNF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Neurotrophin
domain: Brain-derived neurotrophic factor, BDNF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.2e-06  Score=63.14  Aligned_cols=94  Identities=19%  Similarity=0.383  Sum_probs=79.2

Q ss_pred             ccccCCcceeeeee---ceeeeeCCCcEEEEEeccCC-CCceeeeEEEEeecCC-----ccCCccCCCCCCcCeeEEeee
Q psy13251         69 STFTLCPTRSQFVM---PQAAVNNKGNWMYVVNINEV-DNRYKQLVKSEVCLST-----ECNGVCGLPPGYTSRCEQKYV  139 (166)
Q Consensus        69 ~~~~LC~S~~~~i~---Pk~A~N~~g~Wr~IVNt~e~-~n~y~Q~VRvE~C~~~-----~C~~~~~lp~gY~S~CkQKYv  139 (166)
                      ||-..|+|....+.   |..|.+..|+-..|+..... .+.|+|-+-..+|...     .|.+++.  ..+.|.|+++..
T Consensus         1 ge~svCdsvs~Wvt~~nk~ta~D~~G~~Vtvl~~v~~~~~~~kQyF~ET~C~~~~~~~~gCrGid~--~hWnS~Cttt~t   78 (109)
T d1bnda_           1 GQLSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDK--RHWNSQCRTTQS   78 (109)
T ss_dssp             CCEESSCEEEEEEEHHHHCEEEBTTSCEEEECSEEECSSSEEECEEEEEEECTTSGGGSSCTTBCT--TTEEEEEEEEEE
T ss_pred             CccccccceEEEEEccCcceeEeCCCCEEEEEEEEccCCcEEEEEEEEEEecCCCCCCCCccceeC--CccccEEcccEE
Confidence            46789999999996   99999999999888665433 2389999999999852     6998875  468999999999


Q ss_pred             ceEEEEEeCCCCcEEEEEEecCCCcC
Q psy13251        140 QKRLIALQGEGNQLYTDVFWIPSCCM  165 (166)
Q Consensus       140 ~rrLlAld~~g~~l~~D~Fk~PScC~  165 (166)
                      +.|.|..+.++ .+--++.+|.++|+
T Consensus        79 ~VrALt~~~~~-~~~Wr~IrI~taCv  103 (109)
T d1bnda_          79 YVRALTMDSKK-RIGWRFIRIDTSCV  103 (109)
T ss_dssp             EEEEEEECTTC-CEEEEEEEEEEEEE
T ss_pred             EEEEEEEcCCC-ccceeEEEECCceE
Confidence            99999997664 57788999999995

>d1bndb_ g.17.1.3 (B:) Neurotrophin 3, NT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Neurotrophin
domain: Neurotrophin 3, NT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.5e-05  Score=58.41  Aligned_cols=94  Identities=18%  Similarity=0.350  Sum_probs=80.3

Q ss_pred             ccccCCcceeeeee-ceeeeeCCCcEEEEEeccCCCC-ceeeeEEEEeecCC-----ccCCccCCCCCCcCeeEEeeece
Q psy13251         69 STFTLCPTRSQFVM-PQAAVNNKGNWMYVVNINEVDN-RYKQLVKSEVCLST-----ECNGVCGLPPGYTSRCEQKYVQK  141 (166)
Q Consensus        69 ~~~~LC~S~~~~i~-Pk~A~N~~g~Wr~IVNt~e~~n-~y~Q~VRvE~C~~~-----~C~~~~~lp~gY~S~CkQKYv~r  141 (166)
                      ||-..|.|....+. ...|.+.+|+-..|+......| .|+|-+-.-+|.+.     .|.+++.  ..+.|.|+.+=.+.
T Consensus         2 ge~svCdS~s~WV~~k~tA~Di~G~~VtVL~~v~~n~~~~kQyF~ET~C~~~~~~~~gC~giD~--~hWnS~Ctt~~t~V   79 (108)
T d1bndb_           2 GEVSVCDSESLWVTDKSSAIDIRGHQVTVLGEIKTQNSPVKQYFYETRCKEARPVKNGCRGIDD--KHWNSQCKTSQTYV   79 (108)
T ss_dssp             CEEESSCEEEEEECCCCEEEBTTSCEEEECSEECTTTSCEECCEEEEEESCSCSSSSSSTTBCT--TSCEEEEEEEEEEE
T ss_pred             CcccccccEeEEEecCcEEEcCCCCEEEEEEEEecCCcEEEEEEEEEEecCCCCCCCCceeEEc--ccccceecccEEEE
Confidence            47789999999998 7789999999999877654423 89999999999973     7998875  67899999999999


Q ss_pred             EEEEEeCCCCcEEEEEEecCCCcC
Q psy13251        142 RLIALQGEGNQLYTDVFWIPSCCM  165 (166)
Q Consensus       142 rLlAld~~g~~l~~D~Fk~PScC~  165 (166)
                      |.|..+.++ .+--++.+|.++|+
T Consensus        80 rAlt~~~n~-~~~Wr~IrI~taCv  102 (108)
T d1bndb_          80 RALTSENNK-LVGWRWIRIDTSCV  102 (108)
T ss_dssp             EEEEEETTE-EEEEEEEEEEEEEE
T ss_pred             EEEEEcCCC-eeeeEEEEECCceE
Confidence            999998764 47788999999996

>d1beta_ g.17.1.3 (A:) beta-Nerve growth factor {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Neurotrophin
domain: beta-Nerve growth factor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=1.4e-05  Score=58.59  Aligned_cols=93  Identities=20%  Similarity=0.384  Sum_probs=78.6

Q ss_pred             ccccCCcceeeeee-ceeeeeCCCcEEEEEeccCCCC-ceeeeEEEEeecCC-----ccCCccCCCCCCcCeeEEeeece
Q psy13251         69 STFTLCPTRSQFVM-PQAAVNNKGNWMYVVNINEVDN-RYKQLVKSEVCLST-----ECNGVCGLPPGYTSRCEQKYVQK  141 (166)
Q Consensus        69 ~~~~LC~S~~~~i~-Pk~A~N~~g~Wr~IVNt~e~~n-~y~Q~VRvE~C~~~-----~C~~~~~lp~gY~S~CkQKYv~r  141 (166)
                      ||-..|+|....+. +..|.+..|+-..|+......| .|+|-+-..+|.+.     .|.+++.  ..+.|.|+.+=.+.
T Consensus         1 ge~svCds~s~WV~nk~tA~Di~G~~VtVL~~v~~n~~~~kQyF~ET~C~~~~~~~~gC~giD~--~hWnS~Ctt~~t~V   78 (107)
T d1beta_           1 GEFSVCDSVSVWVGDKTTATDIKGKEVTVLAEVNINNSVFRQYFFETKCRASNPVESGCRGIDS--KHWNSYCTTTHTFV   78 (107)
T ss_dssp             CCCCSSCEEEEEESCCCEEEBTTSCEEEECSEEEETTEEEECCEEEEEESCSCSBTTBSTTCCT--TTEEEEEEEEEEEE
T ss_pred             CcccceecEEEEEecCcEeEcCCCCEEEEEEEEecCCcEEEEEEEEEEeCCCCCCCCCceeEeC--CcccceecccEEEE
Confidence            46789999999996 8999999999988866543323 79999999999863     6998775  56899999999999


Q ss_pred             EEEEEeCCCCcEEEEEEecCCCcC
Q psy13251        142 RLIALQGEGNQLYTDVFWIPSCCM  165 (166)
Q Consensus       142 rLlAld~~g~~l~~D~Fk~PScC~  165 (166)
                      |+|..+ . +.+.-++.+|.++|+
T Consensus        79 rAlt~~-~-~~~~Wr~IrI~taCv  100 (107)
T d1beta_          79 KALTTD-E-KQAAWRFIRIDTACV  100 (107)
T ss_dssp             EEEEEC-S-SCEEEEEEEEEEEEE
T ss_pred             EEEEEc-C-CceeeEEEEECCceE
Confidence            999998 3 368888999999996

>d1hcfa_ g.17.1.3 (A:) Neurotrophin 4, NT4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Neurotrophin
domain: Neurotrophin 4, NT4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00049  Score=51.49  Aligned_cols=94  Identities=20%  Similarity=0.353  Sum_probs=79.2

Q ss_pred             ccccCCcceeeeee-ceeeeeCCCcEEEEEecc-CCCC-ceeeeEEEEeecC------------CccCCccCCCCCCcCe
Q psy13251         69 STFTLCPTRSQFVM-PQAAVNNKGNWMYVVNIN-EVDN-RYKQLVKSEVCLS------------TECNGVCGLPPGYTSR  133 (166)
Q Consensus        69 ~~~~LC~S~~~~i~-Pk~A~N~~g~Wr~IVNt~-e~~n-~y~Q~VRvE~C~~------------~~C~~~~~lp~gY~S~  133 (166)
                      ||-..|+|....+. ...|.+..|+-..|+... ...| .|+|-+-..+|..            ..|.+++.  ..+.|.
T Consensus        12 GE~sVCdSvS~WV~nkttA~Di~G~eVtVL~ev~~~n~~~~kQyFfET~C~~~~~~~~~~~~~~sgCrGiD~--rhWnS~   89 (127)
T d1hcfa_          12 GELAVCDAVSGWVTDRRTAVDLRGREVEVLGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGCRGVDR--RHWVSE   89 (127)
T ss_dssp             CCEESSCEEEEEECCCCEEEBTTSCEEEECSEEECSSSSEEECCEEEEEECCC------CCSBSSCCTTBCT--TTEEEE
T ss_pred             cceeeccceeEEEecCcEeEcCCCCEEEEeeeeecCCCcEEEEEEEEEEecCCCcccCCCCcCCCcceeEec--ccccce
Confidence            47899999999998 889999999999998553 2223 6999999999972            26998885  568999


Q ss_pred             eEEeeeceEEEEEeCCCCcEEEEEEecCCCcC
Q psy13251        134 CEQKYVQKRLIALQGEGNQLYTDVFWIPSCCM  165 (166)
Q Consensus       134 CkQKYv~rrLlAld~~g~~l~~D~Fk~PScC~  165 (166)
                      |+.+=.+-|+|..+..| .+.-.+.+|.++|+
T Consensus        90 Cttt~t~VrALT~~~~~-~~~Wr~IrI~taCV  120 (127)
T d1hcfa_          90 CKAKQSYVRALTADAQG-RVGWRWIRIDTACV  120 (127)
T ss_dssp             EEEEEEEEEEEEECSSC-CEEEEEEEEEEEEE
T ss_pred             eeeeeeEEEEEEeccCC-ceeeEEEEECCeEE
Confidence            99999999999998765 58888899999985

>d1aoca_ g.17.1.5 (A:) Coagulogen {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Coagulogen
domain: Coagulogen
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=97.38  E-value=0.0003  Score=53.88  Aligned_cols=79  Identities=23%  Similarity=0.426  Sum_probs=70.0

Q ss_pred             ccCCcceeeeeeceeeeeCCCcEEEEEeccCCCCceeeeEEEEeecCC--ccCCccCCCCCCcCeeEEeeeceEEEEEeC
Q psy13251         71 FTLCPTRSQFVMPQAAVNNKGNWMYVVNINEVDNRYKQLVKSEVCLST--ECNGVCGLPPGYTSRCEQKYVQKRLIALQG  148 (166)
Q Consensus        71 ~~LC~S~~~~i~Pk~A~N~~g~Wr~IVNt~e~~n~y~Q~VRvE~C~~~--~C~~~~~lp~gY~S~CkQKYv~rrLlAld~  148 (166)
                      ..-||..++---|..+.++.|+.+.|||.+.-  .|.|-|-.-+|...  .|        +|+.+|.|+=..-||+++|-
T Consensus        85 ~secpvs~~~cep~fgyt~~~e~riivqap~a--gfrqcvwqhkcr~gsn~c--------~~~grctqqrsvvrlvty~l  154 (175)
T d1aoca_          85 KSECPVSTRDCEPVFGYTVAGEFRVIVQAPRA--GFRQCVWQHKCRFGSNSC--------GYNGRCTQQRSVVRLVTYNL  154 (175)
T ss_dssp             SSBCCEEEECCCCSEEEBTTCCEEEECCBTTT--TBCBCCCEEEETTSSCBC--------SSSCEECCEEEEEEEEEEET
T ss_pred             cccCCcccccccccccceecceEEEEEeCCch--hhHHHHHhhhcccccccc--------ccCccccceeeEEEEEEEec
Confidence            35699999999999999999999999999965  79999999999864  44        68899999999999999999


Q ss_pred             CCCcEEEEEEe
Q psy13251        149 EGNQLYTDVFW  159 (166)
Q Consensus       149 ~g~~l~~D~Fk  159 (166)
                      ...+++-+.|+
T Consensus       155 ek~~f~ce~~r  165 (175)
T d1aoca_         155 EKDGFLCESFR  165 (175)
T ss_dssp             TTTEEEEEEEE
T ss_pred             ccCeEEeeccc
Confidence            87778888886