Psyllid ID: psy13283

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYCKKNANTDDGLDEVEDNRLLDELSKKDSRNFL
Secondary Structure (PSIPRED)
ccccccccccccccccHHcHHHHHHHcccccccccccccccccccccccccccccccccccccEEEcccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHcHEEEEHHcccccccccccccccccccccccccccccEEEccccHcccccccEEEEccccccEEcccccccHHHHHHHHHHHccccccccccccHHHccccccHccHHccHccc
Coil and Loop (DISEMBL)
mhlkknlaWRTAVRLDIKFLVSAYWndfgkaspkdvsdygvpydfqsvmhypakafskngkdtivakkdpkailgqrrgategdlEKVRQMYCKknantddgldevednRLLDelskkdsrnfl
Flexible Loop (DISEMBL)
mhlkknlawrtaVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKafskngkdtivakkdpkailgqrrgategdlekVRQMYCKknantddgldevednrlldelskkdsrnfl
Low Complexity Region (SEG)
MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYCKKNANTDDGLDEVEDNRLLDELSKKDSRNFL
Disordered region (IsUnstruct)
*****NLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFS*******************************************************************
Disordered Region (DISOPRED)
MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYCKKNANTDDGLDEVEDNRLLDELSKKDSRNFL
Disordered Region (DISEMBL)
MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYCKKNANTDDGLDEVEDNRLLDELS********
Disordered Region (DISPRO)
*****NLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYCKKNANTDDGLDEVEDNRLLDELSKKDS**F*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYCKKNANTDDGLDEVEDNRLLDELSKKDSRNFL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
Q21059	605	Zinc metalloproteinase na	yes	N/A	0.629	0.128	0.409	9e-10
Q19269	503	Zinc metalloproteinase na	no	N/A	0.524	0.129	0.469	9e-09
Q20176	951	Zinc metalloproteinase na	no	N/A	0.677	0.088	0.315	6e-08
P55113	382	Zinc metalloproteinase na	no	N/A	0.532	0.172	0.402	8e-08
P91828	360	Zinc metalloproteinase na	no	N/A	0.629	0.216	0.375	8e-08
Q9N2V2	685	Zinc metalloproteinase na	no	N/A	0.540	0.097	0.376	9e-08
P31579	271	Low choriolytic enzyme OS	N/A	N/A	0.620	0.284	0.325	1e-07
P55115	571	Zinc metalloproteinase na	no	N/A	0.629	0.136	0.344	2e-07
P98060	592	Zinc metalloproteinase dp	no	N/A	0.685	0.143	0.326	3e-07
O57460	1022	Dorsal-ventral patterning	yes	N/A	0.532	0.064	0.371	3e-07

>sp|Q21059|NAS34_CAEEL Zinc metalloproteinase nas-34 OS=Caenorhabditis elegans GN=hch-1 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 5/83 (6%)

Query: 24  YWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDP--KAILGQRRGAT 81
           Y + F K S   + DYGV YD+ SVMHY   AFS  G +TI A +DP  +A +GQR   +
Sbjct: 251 YLSQFTKQSASSMVDYGVGYDYGSVMHYDQAAFSSTGGNTI-ATRDPNFQATIGQRVAPS 309

Query: 82  EGDLEKVRQMYCKKNANTDDGLD 104
             D++++   YC  N+   + LD
Sbjct: 310 FADVKRINFAYC--NSTCSNYLD 330

Probable metalloprotease required for normal hatching and migration of neuroblasts. May act by degrading eggshells proteins at hatching.
Caenorhabditis elegans (taxid: 6239)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 2EC: 1

>sp|Q19269|NAS14_CAEEL Zinc metalloproteinase nas-14 OS=Caenorhabditis elegans GN=nas-14 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 27  DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLE 86
           +F K   K +   G+PYD++SVMHY   AFS+NGK TI+  KD +A +GQR   +E D +
Sbjct: 245 NFEKYPRKIIDSLGMPYDYESVMHYHKLAFSRNGKPTIIP-KDNEADVGQRYKLSEMDSK 303

Query: 87  KVRQMY 92
           KV ++Y
Sbjct: 304 KVNKLY 309

Probable metalloprotease.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 2

EC: 1

>sp|Q20176|NAS39_CAEEL Zinc metalloproteinase nas-39 OS=Caenorhabditis elegans GN=nas-39 PE=3 SV=3

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 9   WRTAVRLDIKFLVSAYWN--------DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNG 60
           W    R D    V  ++         +F K+ P++V   G PYDF S+MHY    FS+  
Sbjct: 150 WHEHTRPDRDMYVDIFYKSIQTGQDYNFEKSKPEEVDSLGEPYDFSSIMHYARDTFSRGA 209

Query: 61  -KDTIVAKKDP--KAILGQRRGATEGDLEKVRQMY 92
             DTI+ K +   +  +GQR   +EGD+ + +++Y
Sbjct: 210 FYDTILPKPNSGFRLEIGQRVQLSEGDIRQTKKLY 244

Probable metalloprotease.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 2

EC: 1

>sp|P55113|NAS7_CAEEL Zinc metalloproteinase nas-7 OS=Caenorhabditis elegans GN=nas-7 PE=2 SV=2

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 26  NDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDL 85
           + FGK      S YG PYD++S++HY + AFSKNG  T++ K    A +G  R  ++ D+
Sbjct: 205 DQFGKVDLSKTSYYGQPYDYKSILHYDSLAFSKNGFPTMLPKVK-SATIGNARDFSDVDI 263

Query: 86  EKVRQMY 92
            K+ +MY
Sbjct: 264 SKINRMY 270

Probable metalloprotease.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 2

EC: 1

>sp|P91828|NAS5_CAEEL Zinc metalloproteinase nas-5 OS=Caenorhabditis elegans GN=nas-5 PE=3 SV=2

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 23  AYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDP-KAILGQRRGAT 81
           A +  F K S +D + Y VPYD+ SVMHY   AF+K GK +++ K    + ++G  + A+
Sbjct: 196 AQYPQFEKLSSRDATTYSVPYDYNSVMHYDENAFAKPGKISMMTKDSKFQKVIGHPKDAS 255

Query: 82  EGDLEKVRQMY-CKKNANTD 100
             D +KV  +Y C K  + D
Sbjct: 256 SNDYKKVCAIYHCSKCMHQD 275

Probable metalloprotease.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 2

EC: 1

>sp|Q9N2V2|NAS30_CAEEL Zinc metalloproteinase nas-30 OS=Caenorhabditis elegans GN=nas-30 PE=3 SV=4

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 27  DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPK--AILGQRRGATEGD 84
           +F K S +++ D GVPYD  SVMHY + AF+K+     +  KD +    +GQR+  +  D
Sbjct: 391 NFEKRSWEEIEDMGVPYDVGSVMHYGSNAFTKDWDQITIETKDSRYQGTIGQRQKLSFID 450

Query: 85  LEKVRQMYC 93
           +++V ++YC
Sbjct: 451 VKQVNRLYC 459

Probable metalloprotease.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 2

EC: 1

>sp|P31579|LCE_ORYLA Low choriolytic enzyme OS=Oryzias latipes GN=lce PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKA 72
           V+++ + ++  + ++F K    D  + G PYD+ S+MHY   AF K+ K+TI    +PKA
Sbjct: 193 VKINWENIIKDFTHNFDK---NDTDNLGTPYDYGSIMHYGRTAFGKDRKETITPIPNPKA 249

Query: 73  ILGQRRGATEGDLEKVRQMY 92
            +GQ    ++ D+ +V ++Y
Sbjct: 250 AIGQTERMSDIDILRVNKLY 269

Participates in the breakdown of the egg envelope, which is derived from the egg extracellular matrix, at the time of hatching. Thus allowing the newly hatched fish to swim free. LCE solubilizes the egg envelope only after it has been swollen by the action of HCE.

Oryzias latipes (taxid: 8090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 6

EC: 6

>sp|P55115|NAS15_CAEEL Zinc metalloproteinase nas-15 OS=Caenorhabditis elegans GN=nas-15 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 14  RLDIKFLVSAYWND--------FGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIV 65
           R D    ++  WN+        F K     +   G  YD+ S+MHY  KAFS+NG+ T++
Sbjct: 219 RTDRDDHITIMWNNIQAGMQGQFEKYGHGTIQSLGTGYDYGSIMHYGTKAFSRNGQPTMI 278

Query: 66  AKKDPKAILGQRRGATEGDLEKVRQMY 92
            KK+  A +GQR G ++ D  K+  +Y
Sbjct: 279 PKKN-GATIGQRNGFSKVDKFKINTLY 304

Probable metalloprotease.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 2

EC: 1

>sp|P98060|NAS35_CAEEL Zinc metalloproteinase dpy-31 OS=Caenorhabditis elegans GN=dpy-31 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 9   WRTAVRLDIKFLVSAYWND--------FGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNG 60
           W    R D    V+  W +        F K  P DV + GVPYD+ S+MHY +KAFSK  
Sbjct: 231 WHEQSRPDRDQYVTVRWENIDKDSKGQFLKEDPDDVDNAGVPYDYGSIMHYRSKAFSKFD 290

Query: 61  KDTIVAK--KDPKAILGQRRGATEGDLEKVRQMYC 93
               ++    D +  +GQR   +  D+  + ++YC
Sbjct: 291 DLYTISTYVTDYQKTIGQRDQLSFNDIRLMNKIYC 325

Metalloprotease involved in cuticular collagen maturation. Probably acts as a procollagen C-proteinase in the extracellular matrix.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 2

EC: 1

>sp|O57460|TLL1_DANRE Dorsal-ventral patterning tolloid-like protein 1 OS=Danio rerio GN=tll1 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 27  DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNG-KDTIVAKKDPKAI---LGQRRGATE 82
           +F K  P DV+  G PYDF S+MHY    FS+    DTI+  +D   +   +GQR   ++
Sbjct: 284 NFIKMEPGDVNSLGEPYDFDSIMHYARNTFSRGMFLDTILPSRDENGVRPAIGQRTRLSK 343

Query: 83  GDLEKVRQMY 92
           GD+ + +++Y
Sbjct: 344 GDISQAKKLY 353

Required for patterning ventral tissues of the tail. May increase bone morphogenetic protein (BMP) activity at the end of gastrulation by proteolytic cleavage of chordin and release of BMP from inactive complexes.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
328726717	306	PREDICTED: low choriolytic enzyme-like [	0.645	0.261	0.571	2e-17
195134588	308	GI10933 [Drosophila mojavensis] gi|19390	0.814	0.327	0.417	3e-13
195041076	314	GH12202 [Drosophila grimshawi] gi|193900	0.879	0.347	0.398	6e-13
157138370	286	metalloproteinase, putative [Aedes aegyp	0.661	0.286	0.481	6e-13
345497694	434	PREDICTED: blastula protease 10-like [Na	0.596	0.170	0.552	9e-13
195448797	316	GK24951 [Drosophila willistoni] gi|19416	0.637	0.25	0.45	2e-12
195171995	322	GL27016 [Drosophila persimilis] gi|19846	0.637	0.245	0.437	4e-12
195555363	238	GD24468 [Drosophila simulans] gi|1942031	0.637	0.331	0.437	5e-12
195481434	324	GE15503 [Drosophila yakuba] gi|194189170	0.637	0.243	0.437	6e-12
194892610	318	GG18102 [Drosophila erecta] gi|190649342	0.766	0.298	0.396	6e-12

>gi|328726717|ref|XP_003249013.1| PREDICTED: low choriolytic enzyme-like [Acyrthosiphon pisum]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 54/84 (64%), Gaps = 4/84 (4%)

Query: 23  AYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATE 82
           AYW DF K      S +G+PYD+ SVMHYP  AFSKNGK+TIVAK +P   LGQR GAT 
Sbjct: 213 AYWPDFSKVPDNVTSTFGLPYDYTSVMHYPRYAFSKNGKETIVAKHEPSMSLGQRTGATV 272

Query: 83  GDLEKVRQMY-CKKNA---NTDDG 102
            DL KV  MY C   A   NT+ G
Sbjct: 273 NDLRKVNAMYNCNGAAATPNTNSG 296

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195134588|ref|XP_002011719.1| GI10933 [Drosophila mojavensis] gi|193906842|gb|EDW05709.1| GI10933 [Drosophila mojavensis]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKA 72
           V+++ + ++  + ++F K +   ++++GV YD+QSVMHY + AFSKNGK TI    DP A
Sbjct: 195 VKINWENILDGHAHNFNKYARTHITNFGVEYDYQSVMHYSSLAFSKNGKPTI-EPLDPYA 253

Query: 73  ILGQRRGATEGDLEKVRQMYCKKNANTDDGLDEVEDNRLLDEL 115
            LGQRRG +E D+ K+ +MY +++ N+ D L        LDEL
Sbjct: 254 SLGQRRGLSEKDISKLNEMY-EQDCNSSDLLGLDAFGSYLDEL 295

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195041076|ref|XP_001991188.1| GH12202 [Drosophila grimshawi] gi|193900946|gb|EDV99812.1| GH12202 [Drosophila grimshawi]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 4/113 (3%)

Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKA 72
           V+++ + ++  + ++F K +   ++++GV YD+QSVMHY ++AFSKNG+ TI    DP A
Sbjct: 201 VKINWENILDGHAHNFNKYARTHITNFGVEYDYQSVMHYSSRAFSKNGQATI-EPLDPYA 259

Query: 73  ILGQRRGATEGDLEKVRQMYCKK-NANTDDGLDEVEDNRLLDELSKKDSRNFL 124
            LGQRRG +E D+ K+ +MY +  N N   G D   +   LDEL      N L
Sbjct: 260 TLGQRRGLSEKDISKLNEMYQQDCNGNFLLGFDGFGN--YLDELLDYFQSNLL 310

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157138370|ref|XP_001657262.1| metalloproteinase, putative [Aedes aegypti] gi|108880581|gb|EAT44806.1| AAEL003834-PA [Aedes aegypti]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKA 72
           VR+  + +     N+F KA       +GV YD+ SVMHY AKAFS NG+DTIVAKK    
Sbjct: 204 VRIQTQNIQRGTENNFAKAKAGTTDGFGVQYDYGSVMHYSAKAFSSNGQDTIVAKKKFSG 263

Query: 73  ILGQRRGATEGDLEKVRQMY-CK 94
           ++GQR G +  DL K+  MY CK
Sbjct: 264 VMGQRDGFSSLDLRKINLMYNCK 286

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345497694|ref|XP_001600730.2| PREDICTED: blastula protease 10-like [Nasonia vitripennis]

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 2/76 (2%)

Query: 26  NDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDL 85
           ++F K   K V+DYGV YD+ SVMHY AKAFSKNG+ TI+AKK+    LGQR G +E D+
Sbjct: 216 HNFDKYDNKTVTDYGVSYDYSSVMHYSAKAFSKNGQKTIIAKKE-NVTLGQRDGFSEKDI 274

Query: 86  EKVRQMYCKKNANTDD 101
           EK+  MY K +  T D
Sbjct: 275 EKINIMY-KSHCETRD 289

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195448797|ref|XP_002071818.1| GK24951 [Drosophila willistoni] gi|194167903|gb|EDW82804.1| GK24951 [Drosophila willistoni]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKA 72
           V+++ + ++  + ++F K +   ++++GV YD+QSVMHY +KAFSKNGK TI    DP A
Sbjct: 203 VKINWENILDGHAHNFNKYARTHITNFGVEYDYQSVMHYSSKAFSKNGKATI-EPLDPYA 261

Query: 73  ILGQRRGATEGDLEKVRQMY 92
            LGQRRG ++ D+ K+ +MY
Sbjct: 262 SLGQRRGLSDKDISKLNEMY 281

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195171995|ref|XP_002026787.1| GL27016 [Drosophila persimilis] gi|198467406|ref|XP_001354386.2| GA19789 [Drosophila pseudoobscura pseudoobscura] gi|194111726|gb|EDW33769.1| GL27016 [Drosophila persimilis] gi|198149230|gb|EAL31439.2| GA19789 [Drosophila pseudoobscura pseudoobscura]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKA 72
           V+++ + ++  + ++F K +   ++++GV YD+QSVMHY ++AFSKNGK TI    DP A
Sbjct: 213 VKINWENILDGHAHNFNKYARTHITNFGVEYDYQSVMHYSSRAFSKNGKATI-EPLDPYA 271

Query: 73  ILGQRRGATEGDLEKVRQMY 92
            LGQRRG ++ D+ K+ +MY
Sbjct: 272 SLGQRRGLSDKDISKLNEMY 291

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195555363|ref|XP_002077089.1| GD24468 [Drosophila simulans] gi|194203107|gb|EDX16683.1| GD24468 [Drosophila simulans]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKA 72
           V+++ + ++  + ++F K +   ++++GV YD+QSVMHY ++AFSKNGK TI    DP A
Sbjct: 125 VKINWENILDGHAHNFNKYARTHITNFGVEYDYQSVMHYSSRAFSKNGKATI-EPLDPYA 183

Query: 73  ILGQRRGATEGDLEKVRQMY 92
            LGQRRG ++ D+ K+ +MY
Sbjct: 184 SLGQRRGLSDKDVSKLNEMY 203

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195481434|ref|XP_002101646.1| GE15503 [Drosophila yakuba] gi|194189170|gb|EDX02754.1| GE15503 [Drosophila yakuba]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKA 72
           V+++ + ++  + ++F K +   ++++GV YD+QSVMHY ++AFSKNGK TI    DP A
Sbjct: 211 VKINWENILDGHAHNFNKYARTHITNFGVEYDYQSVMHYSSRAFSKNGKATI-EPLDPYA 269

Query: 73  ILGQRRGATEGDLEKVRQMY 92
            LGQRRG ++ D+ K+ +MY
Sbjct: 270 SLGQRRGLSDKDVSKLNEMY 289

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194892610|ref|XP_001977693.1| GG18102 [Drosophila erecta] gi|190649342|gb|EDV46620.1| GG18102 [Drosophila erecta]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 67/101 (66%), Gaps = 6/101 (5%)

Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKA 72
           V+++ + ++  + ++F K +   ++++GV YD+QSVMHY ++AFSKNGK TI    DP A
Sbjct: 208 VKINWENILDGHAHNFNKYARTHITNFGVEYDYQSVMHYSSRAFSKNGKATI-EPLDPYA 266

Query: 73  ILGQRRGATEGDLEKVRQMY---CKKN--ANTDDGLDEVED 108
            LGQRRG ++ D+ K+ +MY   C ++   N  + +DE+ D
Sbjct: 267 SLGQRRGLSDKDVSKLNEMYEQDCSEDYLLNFGNYIDELLD 307

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
FB|FBgn0030947	324	CG6696 [Drosophila melanogaste	0.814	0.311	0.388	1.8e-14
FB|FBgn0028949	254	CG15254 [Drosophila melanogast	0.669	0.326	0.4	1.6e-11
FB|FBgn0038285	251	CG6974 [Drosophila melanogaste	0.629	0.310	0.404	4e-10
WB|WBGene00003533	503	nas-14 [Caenorhabditis elegans	0.580	0.143	0.445	6.6e-10
FB|FBgn0028947	240	CG11865 [Drosophila melanogast	0.645	0.333	0.370	9.3e-10
FB|FBgn0028948	253	CG15253 [Drosophila melanogast	0.532	0.260	0.432	1.2e-09
FB|FBgn0039069	354	CG6763 [Drosophila melanogaste	0.556	0.194	0.444	1.5e-09
WB|WBGene00003524	360	nas-5 [Caenorhabditis elegans	0.669	0.230	0.364	2.6e-09
WB|WBGene00001828	605	hch-1 [Caenorhabditis elegans	0.629	0.128	0.409	3e-09
FB|FBgn0028950	261	CG15255 [Drosophila melanogast	0.524	0.249	0.439	3.8e-09

FB|FBgn0030947 CG6696 [Drosophila melanogaster (taxid:7227)]

 Score = 188 (71.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 40/103 (38%), Positives = 68/103 (66%)

Query:    13 VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKA 72
             V+++ + ++  + ++F K +   ++++GV YD+QSVMHY ++AFSKNGK TI    DP A
Sbjct:   211 VKINWENILDGHAHNFNKYARTHITNFGVEYDYQSVMHYSSRAFSKNGKATI-EPLDPYA 269

Query:    73 ILGQRRGATEGDLEKVRQMYCKKNANTDDGLDEVEDNRLLDEL 115
              LGQRRG ++ D+ K+ +MY +++ + D  L+       +DEL
Sbjct:   270 SLGQRRGLSDKDVSKLNEMY-EQDCSEDYLLNFDRFGNYIDEL 311

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0017090 "meprin A complex" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

FB|FBgn0028949 CG15254 [Drosophila melanogaster (taxid:7227)]

 Score = 158 (60.7 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 34/85 (40%), Positives = 51/85 (60%)

Query:    13 VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKD-PK 71
             VR+  + +      +F K   + V DYG PYD+ SV+HY A AFSKNG+ TIV  ++  +
Sbjct:   168 VRIAEENITEGTEGNFNKYDNETVEDYGEPYDYSSVLHYTAYAFSKNGEMTIVPLQEGAE 227

Query:    72 AILGQRRGATEGDLEKVRQMY-CKK 95
              ++GQR   T+ D+ K+  MY C +
Sbjct:   228 ELMGQRLQMTQSDINKLNVMYKCPR 252

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

FB|FBgn0038285 CG6974 [Drosophila melanogaster (taxid:7227)]

 Score = 146 (56.5 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 34/84 (40%), Positives = 49/84 (58%)

Query:    13 VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN-GKDTIVAKKDPK 71
             V++D   +   YW+ F   +    + + VPYD++SVMHY   AF+K+  K TI A    K
Sbjct:   168 VQIDYDNIPRKYWSQF--MAMDQTTTFNVPYDYESVMHYSKNAFAKDPSKPTIRALIGGK 225

Query:    72 AI---LGQRRGATEGDLEKVRQMY 92
             A+   +GQ RG +EGD  K+R MY
Sbjct:   226 AVEREMGQVRGPSEGDWTKIRLMY 249

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0017090 "meprin A complex" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

WB|WBGene00003533 nas-14 [Caenorhabditis elegans (taxid:6239)]

 Score = 151 (58.2 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 33/74 (44%), Positives = 48/74 (64%)

Query:    27 DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLE 86
             +F K   K +   G+PYD++SVMHY   AFS+NGK TI+ K D +A +GQR   +E D +
Sbjct:   245 NFEKYPRKIIDSLGMPYDYESVMHYHKLAFSRNGKPTIIPK-DNEADVGQRYKLSEMDSK 303

Query:    87 KVRQMY-CKKNANT 99
             KV ++Y C + + T
Sbjct:   304 KVNKLYQCGEYSKT 317

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0028947 CG11865 [Drosophila melanogaster (taxid:7227)]

 Score = 142 (55.0 bits), Expect = 9.3e-10, P = 9.3e-10
 Identities = 30/81 (37%), Positives = 48/81 (59%)

Query:    13 VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKA 72
             VR+    + S + ++F +     V++YG  YD+ S+MHY   AFSKNG+ TIV  K   A
Sbjct:   161 VRIQTDNIRSGHEHNFQRLRANGVTNYGFGYDYDSIMHYGPFAFSKNGQSTIVPLKS-HA 219

Query:    73 ILGQRRGATEGDLEKVRQMYC 93
              +GQ    +  D++ +++MYC
Sbjct:   220 KIGQATQMSPKDVQTLKRMYC 240

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

FB|FBgn0028948 CG15253 [Drosophila melanogaster (taxid:7227)]

 Score = 142 (55.0 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 29/67 (43%), Positives = 45/67 (67%)

Query:    27 DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKA-ILGQRRGATEGDL 85
             +F K + + V+D+G  YD+ SVMHY   AFSKNG+ TI+A ++ K  ++GQR   +E D+
Sbjct:   180 NFDKYTEETVNDFGEKYDYGSVMHYGPYAFSKNGERTILALEEGKEDVIGQRLELSETDI 239

Query:    86 EKVRQMY 92
              K+  +Y
Sbjct:   240 RKLNAIY 246

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0039069 CG6763 [Drosophila melanogaster (taxid:7227)]

 Score = 145 (56.1 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 32/72 (44%), Positives = 48/72 (66%)

Query:    22 SAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAI-LGQRRGA 80
             S+  N+F KA+  +   +GVPYD+ SVMHY   AFS NG+ TI+A +   A  +GQR G 
Sbjct:   231 SSAMNNFEKAARTEA--FGVPYDYGSVMHYSKNAFSINGQPTILAMQANGADKMGQRNGF 288

Query:    81 TEGDLEKVRQMY 92
             ++ D++K+ +MY
Sbjct:   289 SDYDIQKLNRMY 300

GO:0017090 "meprin A complex" evidence=ISS

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

WB|WBGene00003524 nas-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 143 (55.4 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 31/85 (36%), Positives = 48/85 (56%)

Query:    18 KFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDP-KAILGQ 76
             K +  A +  F K S +D + Y VPYD+ SVMHY   AF+K GK +++ K    + ++G 
Sbjct:   191 KNIEPAQYPQFEKLSSRDATTYSVPYDYNSVMHYDENAFAKPGKISMMTKDSKFQKVIGH 250

Query:    77 RRGATEGDLEKVRQMY-CKKNANTD 100
              + A+  D +KV  +Y C K  + D
Sbjct:   251 PKDASSNDYKKVCAIYHCSKCMHQD 275

GO:0008237 "metallopeptidase activity" evidence=IEA;ISS

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0060465 "pharynx development" evidence=IGI

GO:0043050 "pharyngeal pumping" evidence=IGI

WB|WBGene00001828 hch-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 146 (56.5 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 34/83 (40%), Positives = 48/83 (57%)

Query:    24 YWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDP--KAILGQRRGAT 81
             Y + F K S   + DYGV YD+ SVMHY   AFS  G +TI A +DP  +A +GQR   +
Sbjct:   251 YLSQFTKQSASSMVDYGVGYDYGSVMHYDQAAFSSTGGNTI-ATRDPNFQATIGQRVAPS 309

Query:    82 EGDLEKVRQMYCKKNANTDDGLD 104
               D++++   YC  N+   + LD
Sbjct:   310 FADVKRINFAYC--NSTCSNYLD 330

GO:0008237 "metallopeptidase activity" evidence=IEA;ISS

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035188 "hatching" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

FB|FBgn0028950 CG15255 [Drosophila melanogaster (taxid:7227)]

 Score = 138 (53.6 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 29/66 (43%), Positives = 42/66 (63%)

Query:    27 DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLE 86
             +F K +   V+D+ V YD+ S +HY   AFS NG+DTIV   D  A++GQR G +  D++
Sbjct:   191 NFQKYADTVVTDFEVGYDYDSCLHYRPGAFSINGEDTIVPL-DSSAVIGQRVGLSSKDID 249

Query:    87 KVRQMY 92
             K+  MY
Sbjct:   250 KINIMY 255

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24.21	LOW CONFIDENCE prediction!
3rd Layer	3.4.24	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	124
cd04280	180	cd04280, ZnMc_astacin_like, Zinc-dependent metallo	6e-31
pfam01400	191	pfam01400, Astacin, Astacin (Peptidase family M12A	4e-24
cd04283	182	cd04283, ZnMc_hatching_enzyme, Zinc-dependent meta	3e-19
cd04281	200	cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprot	3e-13
cd04282	230	cd04282, ZnMc_meprin, Zinc-dependent metalloprotea	3e-11

>gnl|CDD|239807 cd04280, ZnMc_astacin_like, Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site

 Score =  108 bits (271), Expect = 6e-31
 Identities = 37/69 (53%), Positives = 47/69 (68%)

Query: 24  YWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEG 83
           Y ++F K SP  V+ YGVPYD+ SVMHY   AFSKNGK TIV K     I+GQR G +  
Sbjct: 112 YEHNFDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNGKPTIVPKDPGYQIIGQREGLSFL 171

Query: 84  DLEKVRQMY 92
           D++K+ +MY
Sbjct: 172 DIKKINKMY 180

Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development. Length = 180

>gnl|CDD|201773 pfam01400, Astacin, Astacin (Peptidase family M12A)

 Score = 90.8 bits (226), Expect = 4e-24
 Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 24  YWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNG-KDTIVAKK-DPKAILGQRRGAT 81
              +F K  P +V   GVPYD+ S+MHY   AFSKNG   TIV K  D +A +GQR   +
Sbjct: 117 QEGNFEKYDPDEVDSLGVPYDYGSIMHYGPYAFSKNGYLPTIVPKDNDYQATIGQRDKLS 176

Query: 82  EGDLEKVRQMY-CK 94
            GD+EK+ ++Y C 
Sbjct: 177 FGDIEKINKLYKCP 190

The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. Members of this family contain two conserved disulphide bridges, these are joined 1-4 and 2-3. Members of this family have an amino terminal propeptide which is cleaved to give the active protease domain. All other linked domains are found to the carboxyl terminus of this domain. This family includes: Astacin, a digestive enzyme from Crayfish. Meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain. Proteins involved in morphogenesis such as human bone morphogenetic protein 1, and Tolloid from Drosophila melanogaster. Length = 191

>gnl|CDD|239810 cd04283, ZnMc_hatching_enzyme, Zinc-dependent metalloprotease, hatching enzyme-like subfamily

 Score = 78.1 bits (193), Expect = 3e-19
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 27  DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLE 86
           +F K    D ++ G PYD+ SVMHY   AFS NGK TIV   DP   +GQR+G +  D+ 
Sbjct: 118 NFDKQ---DTNNLGTPYDYSSVMHYGRYAFSINGKPTIVPIPDPNVPIGQRQGMSNLDIL 174

Query: 87  KVRQMYC 93
           ++ ++Y 
Sbjct: 175 RINKLYN 181

Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion. Length = 182

>gnl|CDD|239808 cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprotease; BMP1/TLD-like subfamily

 Score = 62.8 bits (153), Expect = 3e-13
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 26  NDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGK-DTIVAKKDPKAI---LGQRRGAT 81
            +F K  P++V   G PYDF S+MHY    FS+    DTI+ K+DP  +   +GQR   +
Sbjct: 127 YNFLKMEPEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILPKRDPNGVRPEIGQRTRLS 186

Query: 82  EGDLEKVRQMY 92
           EGD+ +  ++Y
Sbjct: 187 EGDIIQANKLY 197

BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning. Length = 200

>gnl|CDD|239809 cd04282, ZnMc_meprin, Zinc-dependent metalloprotease, meprin_like subfamily

 Score = 57.9 bits (140), Expect = 3e-11
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 20  LVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKD-TIVAK-KDPKAILGQR 77
           ++S   ++F K      +D   PYD++SVMHY   +F+K   + TI  K  +   I+GQR
Sbjct: 154 ILSGREHNFNKYDDSFSTDLNTPYDYESVMHYSPFSFNKGASEPTITTKIPEFNDIIGQR 213

Query: 78  RGATEGDLEKVRQMY 92
              ++ DLE++ +MY
Sbjct: 214 LDFSDIDLERLNRMY 228

Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
cd04281	200	ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1	100.0
cd04283	182	ZnMc_hatching_enzyme Zinc-dependent metalloproteas	100.0
cd04282	230	ZnMc_meprin Zinc-dependent metalloprotease, meprin	100.0
KOG3714|consensus	411		100.0
cd04280	180	ZnMc_astacin_like Zinc-dependent metalloprotease,	100.0
) family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01400">PF01400	191	Astacin: Astacin (Peptidase family M12A) This Pros	100.0
cd04327	198	ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MM	99.88
cd04268	165	ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_	99.32
cd00203	167	ZnMc Zinc-dependent metalloprotease. This super-fa	98.6

>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily

Probab=100.00  E-value=1.9e-40  Score=250.62  Aligned_cols=95  Identities=32%  Similarity=0.522  Sum_probs=89.8

Q ss_pred             CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCC-CCeEEecCCC---CccCCc
Q psy13283          1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNG-KDTIVAKKDP---KAILGQ   76 (124)
Q Consensus         1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g-~~Ti~~~~~~---~~~iGq   76 (124)
                      +|||+|||||+||.|+|+||.++.++||+|++...+.++|+||||+|||||++++||+++ .|||+|+.+.   ..+|||
T Consensus       102 ~HEhsRpDRD~yV~I~~~nI~~~~~~nF~k~~~~~~~~~g~pYDy~SiMHY~~~aFs~~~~~~Ti~p~~~~~~~~~~iGq  181 (200)
T cd04281         102 WHEHTRPDRDDHVTIIRENIQPGQEYNFLKMEPEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILPKRDPNGVRPEIGQ  181 (200)
T ss_pred             cchhccccccceEEEeecccCcchhhhhhhcCccccccCCCccCCCccccCCCCccccCCCCCceEECCCcccccccccc
Confidence            799999999999999999999999999999998888899999999999999999999987 8999997654   367999


Q ss_pred             CCCCCHHHHHHHHhhCCCC
Q psy13283         77 RRGATEGDLEKVRQMYCKK   95 (124)
Q Consensus        77 r~~lS~~Di~~IN~lY~C~   95 (124)
                      |.+||+.|+++||+||.|+
T Consensus       182 r~~lS~~Di~~iN~~Y~C~  200 (200)
T cd04281         182 RTRLSEGDIIQANKLYKCP  200 (200)
T ss_pred             cCCCCHHHHHHHHHhcCCC
Confidence            9999999999999999996

BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.

>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily

Probab=100.00  E-value=3.9e-40  Score=245.79  Aligned_cols=91  Identities=34%  Similarity=0.581  Sum_probs=86.0

Q ss_pred             CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCC
Q psy13283          1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGA   80 (124)
Q Consensus         1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~l   80 (124)
                      +|||+|||||+||.|+|+||.|+.+.||+|.+.   .++|+||||+|||||++++||++|+|||+|+.++..+||||.+|
T Consensus        92 ~HEhsRpDRD~yV~I~~~nI~~~~~~nF~~~~~---~~~~~pYDy~SiMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~l  168 (182)
T cd04283          92 YHEQTRSDRDKYVRINWENIIPDQLYNFDKQDT---NNLGTPYDYSSVMHYGRYAFSINGKPTIVPIPDPNVPIGQRQGM  168 (182)
T ss_pred             cccccccccCceEEEehhhcCchHHhhhhhccc---cccCCcccceeeeccCCcccccCCCCeEEECCcccccccCCCCC
Confidence            799999999999999999999999999999864   46789999999999999999999999999976666789999999


Q ss_pred             CHHHHHHHHhhCCC
Q psy13283         81 TEGDLEKVRQMYCK   94 (124)
Q Consensus        81 S~~Di~~IN~lY~C   94 (124)
                      |+.|+++||+||+|
T Consensus       169 S~~Di~~iN~~Y~C  182 (182)
T cd04283         169 SNLDILRINKLYNC  182 (182)
T ss_pred             CHHHHHHHHHhcCC
Confidence            99999999999999

Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.

>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily

Probab=100.00  E-value=3.5e-39  Score=248.07  Aligned_cols=94  Identities=30%  Similarity=0.439  Sum_probs=88.8

Q ss_pred             CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCC-CCCeEEecCCC-CccCCcCC
Q psy13283          1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN-GKDTIVAKKDP-KAILGQRR   78 (124)
Q Consensus         1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~-g~~Ti~~~~~~-~~~iGqr~   78 (124)
                      ||||+|||||+||+|+|+||.++..+||+|++...+.++|+||||+|||||++++||++ ++|||+|+... ..+||||.
T Consensus       135 ~HEqsRpDRD~yV~I~~~nI~~~~~~nF~k~~~~~~~~~g~pYDy~SIMHY~~~aFs~~~~~pTi~~~~~~~~~~iGqr~  214 (230)
T cd04282         135 YHEQSRSDRDDYVKIWWDQILSGREHNFNKYDDSFSTDLNTPYDYESVMHYSPFSFNKGASEPTITTKIPEFNDIIGQRL  214 (230)
T ss_pred             cccccccccccceEEeecccCchHHHHhhhcCccccccCCCCCCcccccccCCCccccCCCCceeeecCCcccccccccC
Confidence            79999999999999999999999999999999888889999999999999999999999 69999996543 57899999


Q ss_pred             CCCHHHHHHHHhhCCC
Q psy13283         79 GATEGDLEKVRQMYCK   94 (124)
Q Consensus        79 ~lS~~Di~~IN~lY~C   94 (124)
                      +||+.|+++||+||+|
T Consensus       215 ~lS~~Di~~iN~~Y~C  230 (230)
T cd04282         215 DFSDIDLERLNRMYNC  230 (230)
T ss_pred             CCCHHHHHHHHHhcCC
Confidence            9999999999999999

Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.

>KOG3714|consensus

Probab=100.00  E-value=3e-38  Score=259.81  Aligned_cols=99  Identities=35%  Similarity=0.560  Sum_probs=92.8

Q ss_pred             CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCC-CCeEEecCCC-CccCCcCC
Q psy13283          1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNG-KDTIVAKKDP-KAILGQRR   78 (124)
Q Consensus         1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g-~~Ti~~~~~~-~~~iGqr~   78 (124)
                      ||||+|||||+||+|+|+||.++.+.||+|++...+.++|+||||+|||||++++||+++ .|||+|+... ..+||||.
T Consensus       174 ~HehsR~DRD~yV~I~~~ni~~~~~~nF~k~~~~~~~~~~~pYDygSvMHY~~~afs~~~~~~ti~~~~~~~~~~mGqr~  253 (411)
T KOG3714|consen  174 WHEHSRPDRDNYVSINWDNIDPGQEYNFEKYSPDEVTTYGVPYDYGSVMHYAPYAFSKNGSLPTIVPKDNGFQNTMGQRE  253 (411)
T ss_pred             hhccCcccccCceEEeeccCChhhhhhhhhcChhhhhccCCcccCCcccccCCcccCcCCCCCceecccccccccccccC
Confidence            899999999999999999999999999999999888999999999999999999999999 7799997653 45799999


Q ss_pred             CCCHHHHHHHHhhCCCCCCCC
Q psy13283         79 GATEGDLEKVRQMYCKKNANT   99 (124)
Q Consensus        79 ~lS~~Di~~IN~lY~C~~~~~   99 (124)
                      +||+.|+.+||+||+|+..+.
T Consensus       254 ~~S~~Di~~iN~~Y~C~~~~~  274 (411)
T KOG3714|consen  254 RLSFYDIRKINKLYCCPECCE  274 (411)
T ss_pred             cCCHHHHHHHHhhcCCCccCc
Confidence            999999999999999988754

>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site

Probab=100.00  E-value=5.1e-37  Score=228.02  Aligned_cols=92  Identities=42%  Similarity=0.672  Sum_probs=86.9

Q ss_pred             CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCC
Q psy13283          1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGA   80 (124)
Q Consensus         1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~l   80 (124)
                      +|||+|||||+||.|+|+||.++.+.||+|.+...+.++|+||||+|||||++++||++|.|||+|+......+|||.+|
T Consensus        89 ~HEh~R~DRD~yv~i~~~ni~~~~~~nf~~~~~~~~~~~~~~YDy~SiMhY~~~~fs~~~~~ti~~~~~~~~~~g~~~~~  168 (180)
T cd04280          89 YHEQSRPDRDDYVTINWENIQPGYEHNFDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNGKPTIVPKDPGYQIIGQREGL  168 (180)
T ss_pred             cchhcccccCCeEEEeecccChhHHHHhhhcCcccccccCCcCCcceEeccCCcccccCCCceEEECCchhhcccCCCCC
Confidence            69999999999999999999999999999999988888999999999999999999999999999976555558999999


Q ss_pred             CHHHHHHHHhhC
Q psy13283         81 TEGDLEKVRQMY   92 (124)
Q Consensus        81 S~~Di~~IN~lY   92 (124)
                      |+.|+++||+||
T Consensus       169 S~~D~~~in~~Y  180 (180)
T cd04280         169 SFLDIKKINKMY  180 (180)
T ss_pred             CHHHHHHHHHhC
Confidence            999999999998

Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.

>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site

Probab=100.00  E-value=1.1e-36  Score=228.08  Aligned_cols=96  Identities=31%  Similarity=0.551  Sum_probs=69.2

Q ss_pred             CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCC-CCeEEecCC-CCccCCcCC
Q psy13283          1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNG-KDTIVAKKD-PKAILGQRR   78 (124)
Q Consensus         1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g-~~Ti~~~~~-~~~~iGqr~   78 (124)
                      +|||+|||||+||+|+|+||.++.+.||.+.+...+..+++||||+|||||++.+|++++ .|||+|+.. ...+||++.
T Consensus        94 ~HEh~RpDRd~yi~i~~~~i~~~~~~~f~~~~~~~~~~~~~pYD~~SIMHY~~~~~s~~~~~~ti~~~~~~~~~~iG~~~  173 (191)
T PF01400_consen   94 WHEHQRPDRDNYITINWDNIQPGYKHNFDKYPPSEWSTYGSPYDYGSIMHYSSYAFSKNGSQPTITPKDPKYQETIGQRN  173 (191)
T ss_dssp             --GGGSTTGGGTEEE-GGGB-TTSGGGG---SGGGBE-TTS---TT-TT---TTTTBSSTTS-SEEESSTTCTS-GGG-S
T ss_pred             hhhhhccccccEEEEehhcchhhhhhhhhccccccccccCCCcCccCeecccCcccccCCCCCeEEecCCCCcccccccC
Confidence            699999999999999999999999999999998888899999999999999999999998 999999754 479999999


Q ss_pred             CCCHHHHHHHHhhCCCCC
Q psy13283         79 GATEGDLEKVRQMYCKKN   96 (124)
Q Consensus        79 ~lS~~Di~~IN~lY~C~~   96 (124)
                      +||+.|+++||.+|+|+.
T Consensus       174 ~lS~~D~~~in~~Y~C~~  191 (191)
T PF01400_consen  174 RLSFTDIKQINKMYNCPE  191 (191)
T ss_dssp             S--HHHHHHHHHHTT---
T ss_pred             CCCHHHHHHHHHhcCCCC
Confidence            999999999999999973

; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....

>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3

Probab=99.88  E-value=2.4e-23  Score=156.27  Aligned_cols=76  Identities=24%  Similarity=0.357  Sum_probs=62.8

Q ss_pred             CcccCCcCCCCceEEecc--Cccc-----------chh--hhhccccCCCccCCCcccccccCCCCC-CCcccCCCCCeE
Q psy13283          1 MHLKKNLAWRTAVRLDIK--FLVS-----------AYW--NDFGKASPKDVSDYGVPYDFQSVMHYP-AKAFSKNGKDTI   64 (124)
Q Consensus         1 ~HEh~RpDRD~yV~I~~~--NI~~-----------~~~--~nF~k~~~~~~~~~g~pYDy~SVMHY~-~~afs~~g~~Ti   64 (124)
                      +|||+|||||    |.|+  +|.+           +..  .+|.|+...  ..+|+||||+|||||+ +.+|+++|.+| 
T Consensus       107 ~HEh~rpdrd----i~w~~~~i~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~yD~~SIMHY~~~~~~t~~g~~t-  179 (198)
T cd04327         107 IHEHQSPAAN----IPWDKEAVYAYFSGPPNWDRETVINHNVFAKLDDG--DVAYSPYDPDSIMHYPFPGSLTLDGEEV-  179 (198)
T ss_pred             cccccCCCCC----CCcCHHHHHHHHhcCCCCcHHHHHHhhhhhccccc--cccCCCCCcHHHHcCCCcHHhhcCCccc-
Confidence            6999999999    6776  4432           223  789998753  5689999999999999 79999988765 


Q ss_pred             EecCCCCccCCcCCCCCHHHHHHHHhhCC
Q psy13283         65 VAKKDPKAILGQRRGATEGDLEKVRQMYC   93 (124)
Q Consensus        65 ~~~~~~~~~iGqr~~lS~~Di~~IN~lY~   93 (124)
                                |++.+||..|+++||+||.
T Consensus       180 ----------~~~~~lS~~D~~~i~~~Yp  198 (198)
T cd04327         180 ----------PPNRTLSDKDKAFMRLLYP  198 (198)
T ss_pred             ----------CCCCCCCHHHHHHHHHhCc
Confidence                      6788999999999999994

A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.

>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily

Probab=99.32  E-value=1.8e-12  Score=93.34  Aligned_cols=57  Identities=23%  Similarity=0.198  Sum_probs=50.3

Q ss_pred             CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCC
Q psy13283          1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGA   80 (124)
Q Consensus         1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~l   80 (124)
                      .|||+|+|||.||                       ..++.|||+.|||||....|+.+            ..+|++..|
T Consensus       109 ~H~~~~~~~~~~~-----------------------~~~~~~~~~~SvM~y~~~~~~~~------------~~~~~~~~~  153 (165)
T cd04268         109 RHNFAASDRDDNV-----------------------DLLAEKGDTSSVMDYAPSNFSIQ------------LGDGQKYTI  153 (165)
T ss_pred             cccCcCCccCCcc-----------------------hhhccCCCCcccCCCCccccccc------------cccccCCCC
Confidence            5999999999988                       45788999999999999988764            346788899


Q ss_pred             CHHHHHHHHhhC
Q psy13283         81 TEGDLEKVRQMY   92 (124)
Q Consensus        81 S~~Di~~IN~lY   92 (124)
                      |..||++|+.||
T Consensus       154 ~~~Di~ai~~lY  165 (165)
T cd04268         154 GPYDIAAIKKLY  165 (165)
T ss_pred             CHHHHHHHHhcC
Confidence            999999999998

This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.

>cd00203 ZnMc Zinc-dependent metalloprotease

Probab=98.60  E-value=6e-08  Score=69.59  Aligned_cols=57  Identities=23%  Similarity=0.351  Sum_probs=47.4

Q ss_pred             CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCC
Q psy13283          1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGA   80 (124)
Q Consensus         1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~l   80 (124)
                      .|++.|+|||.+|.|                .   ....+.+|++.|||||....|+                ++++..+
T Consensus       111 ~H~~~~~~~~~~~~~----------------~---~~~~~~~~~~~siM~y~~~~~~----------------~~~~~~f  155 (167)
T cd00203         111 YHDHDRKDRDDYPTI----------------D---DTLNAEDDDYYSVMSYTKGSFS----------------DGQRKDF  155 (167)
T ss_pred             CccCcCCCCCCCccc----------------c---ccccCCCCCCCeEeccCccccC----------------cccCCCc
Confidence            599999999999887                1   1335679999999999866553                5778889


Q ss_pred             CHHHHHHHHhhC
Q psy13283         81 TEGDLEKVRQMY   92 (124)
Q Consensus        81 S~~Di~~IN~lY   92 (124)
                      |..|+.+|+++|
T Consensus       156 S~~d~~~i~~~Y  167 (167)
T cd00203         156 SQCDIDQINKLY  167 (167)
T ss_pred             CHHHHHHHHhhC
Confidence            999999999998

This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	124
4gwn_A	553	Crystal Structure Of Human Mature Meprin Beta Lengt		3e-07
4gwm_A	592	Crystal Structure Of Human Promeprin Beta Length =		3e-07
3edg_A	202	Crystal Structure Of Bone Morphogenetic Protein 1 P		1e-06
3edh_A	201	Crystal Structure Of Bone Morphogenetic Protein 1 P		2e-06
3edi_A	201	Crystal Structure Of Tolloid-Like Protease 1 (Tll-1		2e-06
3lqb_A	199	Crystal Structure Of The Hatching Enzyme Zhe1 From		5e-05

>pdb|4GWN|A Chain A, Crystal Structure Of Human Mature Meprin Beta Length = 553

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSD-YGVPYDFQSVMHYPAKAFSKNGKDTIVAK-KDP 70
           VR+    ++S   ++F   S  D+SD   VPYD+ SVMHY   AF    + TIV +  D 
Sbjct: 112 VRIMWDRILSGREHNFNTYS-DDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDF 170
Query: 71  KAILGQRRGATEGDLEKVRQMY 92
           + ++GQR   ++ DL K+ Q+Y
Sbjct: 171 EDVIGQRMDFSDSDLLKLNQLY 192

>pdb|4GWM|A Chain A, Crystal Structure Of Human Promeprin Beta Length = 592

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSD-YGVPYDFQSVMHYPAKAFSKNGKDTIVAK-KDP 70
           VR+    ++S   ++F   S  D+SD   VPYD+ SVMHY   AF    + TIV +  D 
Sbjct: 151 VRIMWDRILSGREHNFNTYS-DDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDF 209
Query: 71  KAILGQRRGATEGDLEKVRQMY 92
           + ++GQR   ++ DL K+ Q+Y
Sbjct: 210 EDVIGQRMDFSDSDLLKLNQLY 231

>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease Domain Length = 202

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 27  DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN-GKDTIVAKKDPKAI---LGQRRGATE 82
           +F K  P++V   G  YDF S+MHY    FS+    DTIV K +   +   +GQR   ++
Sbjct: 129 NFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSK 188
Query: 83  GDLEKVRQMY 92
           GD+ + R++Y
Sbjct: 189 GDIAQARKLY 198

>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease Domain In Complex With Partially Bound Dmso Length = 201

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 27  DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN-GKDTIVAKKDPKAI---LGQRRGATE 82
           +F K  P++V   G  YDF S+MHY    FS+    DTIV K +   +   +GQR   ++
Sbjct: 128 NFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTRLSK 187
Query: 83  GDLEKVRQMY 92
           GD+ + R++Y
Sbjct: 188 GDIAQARKLY 197

>pdb|3EDI|A Chain A, Crystal Structure Of Tolloid-Like Protease 1 (Tll-1) Protease Domain Length = 201

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 27  DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNG-KDTIVAKKDPKAI---LGQRRGATE 82
           +F K  P +V+  G  YDF S+MHY    FS+    DTI+  +D   I   +GQR   ++
Sbjct: 128 NFLKMEPGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILPSRDDNGIRPAIGQRTRLSK 187
Query: 83  GDLEKVRQMY 92
           GD+ + R++Y
Sbjct: 188 GDIAQARKLY 197

>pdb|3LQB|A Chain A, Crystal Structure Of The Hatching Enzyme Zhe1 From The Zebrafish Danio Rerio Length = 199

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 41  VPYDFQSVMHYPAKAFS-KNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMY 92
            PYD+ S+MHY   AF+ + G +TI    D    +GQR+G ++ D+ ++ ++Y
Sbjct: 145 TPYDYGSLMHYGKTAFAIQPGLETITPIPDENVQIGQRQGLSKIDILRINKLY 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
3edh_A	201	Bone morphogenetic protein 1; vicinal disulfide, a	6e-26
3lqb_A	199	Hatching enzyme, LOC792177 protein; hydrolase, met	4e-25
3lq0_A	235	Proastacin; metallopeptidase, zymogen activation,	2e-23

>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} PDB: 3edg_A 3edi_A Length = 201

 Score = 95.2 bits (237), Expect = 6e-26
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN-GKDTIVAKKDPK 71
           V +  + +      +F K  P++V   G  YDF S+MHY    FS+    DTIV K +  
Sbjct: 114 VSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVN 173

Query: 72  AI---LGQRRGATEGDLEKVRQMY-C 93
            +   +GQR   ++GD+ + R++Y C
Sbjct: 174 GVKPPIGQRTRLSKGDIAQARKLYKC 199

>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio} Length = 199

 Score = 93.3 bits (232), Expect = 4e-25
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN-GKDTIVAKKDPK 71
           VR++   +      +F K   +  ++   PYD+ S+MHY   AF+   G +TI    D  
Sbjct: 120 VRINWNNISPGMAYNFLK---QKTNNQNTPYDYGSLMHYGKTAFAIQPGLETITPIPDEN 176

Query: 72  AILGQRRGATEGDLEKVRQMY-C 93
             +GQR+G ++ D+ ++ ++Y C
Sbjct: 177 VQIGQRQGLSKIDILRINKLYGC 199

>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, Z disulfide bond, hydrolase, metal-binding, metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A Length = 235

 Score = 89.9 bits (223), Expect = 2e-23
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGK--DTIVAKKDP 70
           V ++ + +  +  ++F   +       G  Y + S+MHY   +FS      +TIV  ++ 
Sbjct: 147 VTINYQNVDPSMTSNFDIDTYSR--YVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNG 204

Query: 71  KAI--LGQRRGATEGDLEKVRQMYC 93
             +     +    + D  ++  +Y 
Sbjct: 205 IDLTDPYDKAHMLQTDANQINNLYT 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
3edh_A	201	Bone morphogenetic protein 1; vicinal disulfide, a	100.0
3lqb_A	199	Hatching enzyme, LOC792177 protein; hydrolase, met	100.0
3lq0_A	235	Proastacin; metallopeptidase, zymogen activation,	100.0
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	100.0
2y6d_A	174	Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapie	94.42
1hv5_A	165	Stromelysin 3; inhibition, phosphinic inhibitor, h	92.87
1cge_A	168	Fibroblast collagenase; hydrolase (metalloprotease	81.16
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	80.37

>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A

Probab=100.00  E-value=4.1e-42  Score=258.60  Aligned_cols=96  Identities=29%  Similarity=0.445  Sum_probs=90.4

Q ss_pred             CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCC-CCCeEEecCCCC---ccCCc
Q psy13283          1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN-GKDTIVAKKDPK---AILGQ   76 (124)
Q Consensus         1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~-g~~Ti~~~~~~~---~~iGq   76 (124)
                      ||||+|||||+||+|+|+||.|+.++||.|++..++.++|+||||+|||||+++|||++ ++|||+|+.+..   ..|||
T Consensus       102 ~HE~~R~DRD~yV~I~~~ni~~~~~~nF~k~~~~~~~~~g~~YDy~SvMHY~~~aFs~~~~~~Ti~p~~~~~~~~~~iGq  181 (201)
T 3edh_A          102 WHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQ  181 (201)
T ss_dssp             CCGGGSTTGGGTEEECGGGBCTTCGGGGCCCCGGGBCCTTCCCCTTCTTCCCTTTTBSSTTSCSEEESSCBTTBCCCCCC
T ss_pred             hhhhhhhccCcEEEEehhccCcchhHhhhcCChhhccccCCccCCCCcccCCCccccCCCCCCceEeCCCCCcccccCcc
Confidence            79999999999999999999999999999999988999999999999999999999997 699999976543   68999


Q ss_pred             CCCCCHHHHHHHHhhCCCCC
Q psy13283         77 RRGATEGDLEKVRQMYCKKN   96 (124)
Q Consensus        77 r~~lS~~Di~~IN~lY~C~~   96 (124)
                      |.+||+.||++||+||+|+.
T Consensus       182 r~~lS~~Di~~in~lY~C~~  201 (201)
T 3edh_A          182 RTRLSKGDIAQARKLYKCPA  201 (201)
T ss_dssp             CSSCCHHHHHHHHHHTTCCC
T ss_pred             cCCCCHHHHHHHHHhcCCCC
Confidence            99999999999999999974

>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}

Probab=100.00  E-value=3.5e-41  Score=253.39  Aligned_cols=91  Identities=26%  Similarity=0.450  Sum_probs=86.7

Q ss_pred             CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCC-CCCeEEecCCCCccCCcCCC
Q psy13283          1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN-GKDTIVAKKDPKAILGQRRG   79 (124)
Q Consensus         1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~-g~~Ti~~~~~~~~~iGqr~~   79 (124)
                      ||||+|||||+||+|+|+||.|+.++||.|..   +.++|+||||+|||||+++|||++ |+|||+|+.++..+||||.+
T Consensus       108 ~HEh~R~DRD~yV~I~~~nI~~~~~~nF~k~~---~~~~~~pYDy~SvMHY~~~aFs~n~g~~Ti~~~~~~~~~iGqr~~  184 (199)
T 3lqb_A          108 YHEQSRSDRDQYVRINWNNISPGMAYNFLKQK---TNNQNTPYDYGSLMHYGKTAFAIQPGLETITPIPDENVQIGQRQG  184 (199)
T ss_dssp             CCGGGSTTGGGTEEECGGGBCTTCGGGGCCCC---BCCTTCCCCTTCTTCCCTTTTBSSTTCCSEEESSCTTSCCCCCSS
T ss_pred             ceeeeccCcCceEEeehhhcCcchhhhccccc---ccccCCcCCCCcccCCCCcccccCCCCCeEEECCCCCCCcccccC
Confidence            79999999999999999999999999999986   367899999999999999999999 89999998677889999999


Q ss_pred             CCHHHHHHHHhhCCC
Q psy13283         80 ATEGDLEKVRQMYCK   94 (124)
Q Consensus        80 lS~~Di~~IN~lY~C   94 (124)
                      ||+.||++||+||+|
T Consensus       185 lS~~Di~~in~lY~C  199 (199)
T 3lqb_A          185 LSKIDILRINKLYGC  199 (199)
T ss_dssp             CCHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHhcCC
Confidence            999999999999999

>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A

Probab=100.00  E-value=1.6e-40  Score=255.22  Aligned_cols=94  Identities=15%  Similarity=0.219  Sum_probs=88.3

Q ss_pred             CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCC-CCCeEEecCCCCc---cCCc
Q psy13283          1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN-GKDTIVAKKDPKA---ILGQ   76 (124)
Q Consensus         1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~-g~~Ti~~~~~~~~---~iGq   76 (124)
                      ||||+|||||+||+|+|+||.++.++||.|++..  .++|+||||+|||||+++|||++ |+|||+|++++..   +|||
T Consensus       135 ~HEhsR~DRD~yV~I~~~nI~~~~~~nF~k~~~~--~~~g~pYDy~SvMHY~~~aFs~n~g~~Ti~~~~~~~~~~~~iGq  212 (235)
T 3lq0_A          135 YHEHTRMDRDNYVTINYQNVDPSMTSNFDIDTYS--RYVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLTDPYD  212 (235)
T ss_dssp             CCGGGSTTGGGTEEECGGGBCTTSGGGGCCCTTS--CCCCSCCCTTCTTCCCTTTTBTTTTTSCSEEESSTTCCCCCGGG
T ss_pred             ceeeecccccceeEeehhccCcchHHHhccCCcc--ccCCCcCCCCcccCCCCcccccCCCCCcEEECCCCCcccccccc
Confidence            7999999999999999999999999999999875  78999999999999999999999 8999999866655   8999


Q ss_pred             CCCCCHHHHHHHHhhCCCCC
Q psy13283         77 RRGATEGDLEKVRQMYCKKN   96 (124)
Q Consensus        77 r~~lS~~Di~~IN~lY~C~~   96 (124)
                      |.+||+.||++||+||+|+.
T Consensus       213 r~~lS~~Di~~in~lY~C~c  232 (235)
T 3lq0_A          213 KAHMLQTDANQINNLYTNEC  232 (235)
T ss_dssp             CSSCCHHHHHHHHHHTHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCCC
Confidence            99999999999999999953

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=100.00  E-value=5.1e-39  Score=272.76  Aligned_cols=113  Identities=26%  Similarity=0.328  Sum_probs=94.0

Q ss_pred             CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCCCCeEEecCC-CCccCCcCCC
Q psy13283          1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKD-PKAILGQRRG   79 (124)
Q Consensus         1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~-~~~~iGqr~~   79 (124)
                      ||||+|||||+||+|+|+||.++.++||.|+....+.++|+||||+|||||+++|||++++|||+|+.. ...+||||.+
T Consensus       139 ~HEqsR~DRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~aFs~~~~~Ti~~~~~~~~~~iGqr~~  218 (592)
T 4gwm_A          139 WHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMD  218 (592)
T ss_dssp             CCSTTSTTGGGTEEECGGGBCTTCGGGGCCCCC------CCCCCTTCTTSCCTTTTBSSSSCSEEESSGGGTTTTTCCSS
T ss_pred             cccccCcCccceEEEehhhcCcchhhHHhhcCccccccCCCCcCCCccCcCCCCccccCCcceEEecCCCccCCcccccc
Confidence            799999999999999999999999999999999888999999999999999999999999999999653 4678999999


Q ss_pred             CCHHHHHHHHhhCCCCCCCCCCChhhhccCccch
Q psy13283         80 ATEGDLEKVRQMYCKKNANTDDGLDEVEDNRLLD  113 (124)
Q Consensus        80 lS~~Di~~IN~lY~C~~~~~~~g~~~~~~~~~~~  113 (124)
                      ||+.||++||+||+|+.+++....-+++...+|+
T Consensus       219 lS~~Di~~iN~lY~C~~~~~~~~~C~FE~~d~Cg  252 (592)
T 4gwm_A          219 FSDSDLLKLNQLYNCSSSLSFMDSCSFELENVCG  252 (592)
T ss_dssp             CCHHHHHHHHHHTTCSCCSSEEEEECCCSTTGGG
T ss_pred             CcHHHHHHHHHhcCCCCccccccCCCcccccccC
Confidence            9999999999999999998743333333334443

>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*

Probab=94.42  E-value=0.029  Score=40.18  Aligned_cols=21  Identities=14%  Similarity=0.438  Sum_probs=14.0

Q ss_pred             CCCCHHHHHHHHhhCCCCCCC
Q psy13283         78 RGATEGDLEKVRQMYCKKNAN   98 (124)
Q Consensus        78 ~~lS~~Di~~IN~lY~C~~~~   98 (124)
                      ..|+..||..|+.||+|+...
T Consensus       151 ~~l~~~Di~~i~~lYg~~~~~  171 (174)
T 2y6d_A          151 FKLSQDDIKGIQKLYGKRSNS  171 (174)
T ss_dssp             CCCCHHHHHHHHHHC------
T ss_pred             CCCCHHHHHHHHHHhCcCCCC
Confidence            469999999999999987754

>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11

Probab=92.87  E-value=0.13  Score=36.21  Aligned_cols=19  Identities=11%  Similarity=0.274  Sum_probs=15.4

Q ss_pred             CCCCCHHHHHHHHhhCCCC
Q psy13283         77 RRGATEGDLEKVRQMYCKK   95 (124)
Q Consensus        77 r~~lS~~Di~~IN~lY~C~   95 (124)
                      ...|+..||..|+.||+|+
T Consensus       146 ~~~l~~~Di~~iq~LYg~~  164 (165)
T 1hv5_A          146 PLSLSPDDRRGIQHLYGRP  164 (165)
T ss_dssp             SCCCCHHHHHHHHHHCC--
T ss_pred             CCCCCHHHHHHHHHHhCCC
Confidence            3579999999999999875

>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A

Probab=81.16  E-value=1.8  Score=30.39  Aligned_cols=18  Identities=11%  Similarity=0.423  Sum_probs=14.9

Q ss_pred             CCCCHHHHHHHHhhCCCC
Q psy13283         78 RGATEGDLEKVRQMYCKK   95 (124)
Q Consensus        78 ~~lS~~Di~~IN~lY~C~   95 (124)
                      ..|+..||..|+.||..+
T Consensus       145 ~~l~~~Di~~i~~lYg~~  162 (168)
T 1cge_A          145 VQLAQDDIDGIQAIYGRS  162 (168)
T ss_dssp             CCCCHHHHHHHHHHHCC-
T ss_pred             CCCCHHHHHHHHHHhCcC
Confidence            369999999999999654

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=80.37  E-value=1.6  Score=35.61  Aligned_cols=37  Identities=24%  Similarity=0.578  Sum_probs=26.7

Q ss_pred             ccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCCCHHHHHHHHhhCCCCCC
Q psy13283         42 PYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYCKKNA   97 (124)
Q Consensus        42 pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~lS~~Di~~IN~lY~C~~~   97 (124)
                      .-|.+||| |+.+.++                 + ...|+..||..|+.||.|...
T Consensus       210 ~~~~~svM-~p~y~~~-----------------~-~~~l~~~Di~~i~~lYg~~~~  246 (450)
T 1su3_A          210 STDIGALM-YPSYTFS-----------------G-DVQLAQDDIDGIQAIYGRSQN  246 (450)
T ss_dssp             CSCTTSTT-SSBCCCC-----------------S-SCCCCHHHHHHHHHHHCCCSC
T ss_pred             CCCCccee-ccccccC-----------------C-cCCCCHHHHHHHHHHhCCCCC
Confidence            34778888 6655431                 1 346899999999999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d1asta_	200	d.92.1.8 (A:) Astacin {European fresh water crayfi	2e-15

>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]} Length = 200

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Astacin
domain: Astacin
species: European fresh water crayfish (Astacus astacus) [TaxId: 6715]

 Score = 67.1 bits (163), Expect = 2e-15
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 13  VRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKN--GKDTIVAKKDP 70
           V ++ + +  +  ++F   +       G  Y + S+MHY   +FS      +TIV  ++ 
Sbjct: 113 VTINYQNVDPSMTSNFDIDTYSRY--VGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNG 170

Query: 71  KAI--LGQRRGATEGDLEKVRQMYC 93
             +     +    + D  ++  +Y 
Sbjct: 171 IDLTDPYDKAHMLQTDANQINNLYT 195

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d1asta_	200	Astacin {European fresh water crayfish (Astacus as	100.0
d1bqqm_	174	Membrane-type matrix metalloproteinase (CDMT1-MMP)	97.33
d1y93a1	158	Macrophage elastase (MMP-12) {Human (Homo sapiens)	92.27
d1qiba_	161	Gelatinase A {Human (Homo sapiens) [TaxId: 9606]}	91.79
d1hy7a_	168	Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibro	91.49
d1xuca1	169	Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxI	90.4
d1hfca_	157	Fibroblast collagenase (MMP-1) {Human (Homo sapien	89.18
d2ovxa1	159	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	88.31
d1kapp2	246	Metalloprotease {Pseudomonas aeruginosa [TaxId: 28	83.44
d1rm8a_	169	Matrix metalloproteinase-16 (MMP-16) {Human (Homo	82.59
d1mmqa_	166	Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9	81.54
d1g9ka2	242	Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId	81.49

>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Astacin
domain: Astacin
species: European fresh water crayfish (Astacus astacus) [TaxId: 6715]

Probab=100.00  E-value=3.3e-37  Score=229.84  Aligned_cols=93  Identities=17%  Similarity=0.251  Sum_probs=84.6

Q ss_pred             CcccCCcCCCCceEEeccCcccchhhhhccccCCCccCCCcccccccCCCCCCCcccCCC--CCeEEecCCC--CccCCc
Q psy13283          1 MHLKKNLAWRTAVRLDIKFLVSAYWNDFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNG--KDTIVAKKDP--KAILGQ   76 (124)
Q Consensus         1 ~HEh~RpDRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g--~~Ti~~~~~~--~~~iGq   76 (124)
                      +|||+|||||+||.|+|+||.++...||+|.+..  ..+|+||||+|||||++++||++|  .|||+|++++  ...+||
T Consensus       101 ~HEh~RpDRD~yV~i~~~ni~~~~~~nF~~~~~~--~~~g~~YDy~SIMHY~~~afs~n~~~~~Ti~~~~~~~~~~~~gq  178 (200)
T d1asta_         101 YHEHTRMDRDNYVTINYQNVDPSMTSNFDIDTYS--RYVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLTDPYD  178 (200)
T ss_dssp             CCGGGSTTGGGTEEECGGGBCTTSGGGGCCCSSE--ECCSCCCCTTCTTCCCTTTTBTTTTTSCSEEESSTTCCCCCGGG
T ss_pred             cchhhcccccceEEEeeeccCcchhhhhhhcccc--cccccccCccchhcccccccccCCCCCCcceECCCCccccCccc
Confidence            7999999999999999999999999999998754  457999999999999999999987  7999997654  256899


Q ss_pred             CCCCCHHHHHHHHhhCCCC
Q psy13283         77 RRGATEGDLEKVRQMYCKK   95 (124)
Q Consensus        77 r~~lS~~Di~~IN~lY~C~   95 (124)
                      |.+||+.|+++||+||+|.
T Consensus       179 r~~lS~~Di~~in~~Y~c~  197 (200)
T d1asta_         179 KAHMLQTDANQINNLYTNE  197 (200)
T ss_dssp             CSSCCHHHHHHHHHHTHHH
T ss_pred             ccCCCHHHHHHHHHHhCCC
Confidence            9999999999999999984

>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase (CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Membrane-type matrix metalloproteinase (CDMT1-MMP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=4.5e-05  Score=51.09  Aligned_cols=50  Identities=10%  Similarity=0.010  Sum_probs=33.2

Q ss_pred             hhccccCCCccCCCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCCCHHHHHHHHhhCC
Q psy13283         27 DFGKASPKDVSDYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYC   93 (124)
Q Consensus        27 nF~k~~~~~~~~~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~lS~~Di~~IN~lY~   93 (124)
                      +.....-..+.-|+-|+|..|||||.   ++.              .-+.+..|+..||..|+.||+
T Consensus       122 ~v~~HEiGHaLGL~H~~d~~SvM~p~---~~~--------------~~~~~~~L~~~Di~~i~~LYG  171 (174)
T d1bqqm_         122 LVAVHELGHALGLEHSSDPSAIMAPF---YQW--------------MDTENFVLPDDDRRGIQQLYG  171 (174)
T ss_dssp             HHHHHHHHHTTTCCCCSCTTCSSSSB---CCC--------------CCSTTCCCCHHHHTTHHHHTT
T ss_pred             hhhhcccccccCCCCCCCCCCccCCc---ccC--------------CCCCCCCCCHHHHHHHHHHhC
Confidence            33333333445567799999999974   211              012234699999999999995

>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Macrophage elastase (MMP-12)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.069  Score=34.64  Aligned_cols=39  Identities=15%  Similarity=0.178  Sum_probs=26.8

Q ss_pred             CCCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCCCHHHHHHHHhhCC
Q psy13283         38 DYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYC   93 (124)
Q Consensus        38 ~~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~lS~~Di~~IN~lY~   93 (124)
                      -|+=|.|..|||+|.   ++..              -+....|+..||+.|+.||+
T Consensus       120 GL~H~~d~~svM~~~---~~~~--------------~~~~~~l~~~Di~~lq~LYG  158 (158)
T d1y93a1         120 GLGHSSDPKAVMFPT---YKYV--------------DINTFRLSADDIRGIQSLYG  158 (158)
T ss_dssp             TCCCCSCTTSTTSSS---CCCC--------------CGGGCCCCHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcccccc---ccCC--------------CCCcCCCCHHHHHHHHHhhC
Confidence            366688999999764   2110              01223589999999999995

>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Gelatinase A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=0.082  Score=34.29  Aligned_cols=37  Identities=11%  Similarity=0.202  Sum_probs=27.2

Q ss_pred             CCCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCCCHHHHHHHHhhCC
Q psy13283         38 DYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYC   93 (124)
Q Consensus        38 ~~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~lS~~Di~~IN~lY~   93 (124)
                      -|+-+.|..|||+|.   |+.                +....|+..||..|+.||+
T Consensus       122 GL~H~~~~~svM~~~---~~~----------------~~~~~l~~~Di~~i~~LYG  158 (161)
T d1qiba_         122 GLEHSQDPGALMAPI---YTY----------------TKNFRLSQDDIKGIQELYG  158 (161)
T ss_dssp             TCCCCSCTTSTTSSS---CCC----------------CSSCCCCHHHHHHHHHHHC
T ss_pred             cCCCCCCCCCeeccc---cCC----------------CCCCCCCHHHHHHHHHHhC
Confidence            466788999999864   211                1123599999999999996

>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Stromelysin-1 (MMP-3)
species: Human (Homo sapiens), fibroblast [TaxId: 9606]

Probab=91.49  E-value=0.079  Score=34.68  Aligned_cols=40  Identities=10%  Similarity=0.065  Sum_probs=26.4

Q ss_pred             CCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCCCHHHHHHHHhhCCC
Q psy13283         39 YGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYCK   94 (124)
Q Consensus        39 ~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~lS~~Di~~IN~lY~C   94 (124)
                      |+=+.|.+|||+|.-...                .-+....|+..||+.|+.||+-
T Consensus       127 L~H~~~~~svM~~~~~~~----------------~~~~~~~l~~~Di~~lq~LYGa  166 (168)
T d1hy7a_         127 LFHSANTEALMYPLYHSL----------------TDLTRFRLSQDDINGIQSLYGP  166 (168)
T ss_dssp             BCCCSCTTSTTSCC----------------------CTTCCCCHHHHHHHHHHHCS
T ss_pred             CCcCCCCCceecccccCC----------------CCCccCCCCHHHHHHHHHHhCc
Confidence            556788999998762111                0112235899999999999963

>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Collagenase-3 (MMP-13)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.40  E-value=0.17  Score=33.09  Aligned_cols=41  Identities=10%  Similarity=0.126  Sum_probs=27.1

Q ss_pred             CCCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCCCHHHHHHHHhhCCCC
Q psy13283         38 DYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYCKK   95 (124)
Q Consensus        38 ~~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~lS~~Di~~IN~lY~C~   95 (124)
                      -|+-|-|..|||++. ..+..                .....|+..||..|..||+-.
T Consensus       126 GL~H~~d~~svM~p~-~~~~~----------------~~~~~L~~~Di~aiq~LYGa~  166 (169)
T d1xuca1         126 GLDHSKDPGALMFPI-YTYTG----------------KSHFMLPDDDVQGIQSLYGPG  166 (169)
T ss_dssp             TBCCCSCTTSTTSSS-CCCCC----------------CSSCCCCHHHHHHHHHHHCCS
T ss_pred             CCCCCCCCCceecce-eecCC----------------CCCCCCCHHHHHHHHHHhCcC
Confidence            356688899999543 22210                011358999999999999643

>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Fibroblast collagenase (MMP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.18  E-value=0.19  Score=32.28  Aligned_cols=37  Identities=11%  Similarity=0.240  Sum_probs=25.9

Q ss_pred             CCCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCCCHHHHHHHHhhCC
Q psy13283         38 DYGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYC   93 (124)
Q Consensus        38 ~~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~lS~~Di~~IN~lY~   93 (124)
                      -|+-+.+..|||++.   +..                +....|+..||..|+.||+
T Consensus       119 GL~H~~~~~svM~~~---~~~----------------~~~~~l~~~Di~~i~~lYG  155 (157)
T d1hfca_         119 GLSHSTDIGALMYPS---YTF----------------SGDVQLAQDDIDGIQAIYG  155 (157)
T ss_dssp             TCCCCSCTTSTTCSS---CCC----------------CSSCCCCHHHHHHHHHHHC
T ss_pred             cCCCCCCCCcccccc---ccC----------------CCCCCCCHHHHHHHHHHcC
Confidence            356677889999755   211                1113589999999999995

>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.31  E-value=0.28  Score=31.69  Aligned_cols=35  Identities=11%  Similarity=0.150  Sum_probs=25.1

Q ss_pred             CCcccccccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCCCHHHHHHHHhhC
Q psy13283         39 YGVPYDFQSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMY   92 (124)
Q Consensus        39 ~g~pYDy~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~lS~~Di~~IN~lY   92 (124)
                      |+=+-|.+|||+|.   ++.                +....|+..||..|+.||
T Consensus       125 L~H~~~~~sVM~p~---~~~----------------~~~~~l~~~Di~~i~~LY  159 (159)
T d2ovxa1         125 LDHSSVPEALMYPM---YRF----------------TEGPPLHKDDVNGIRHLY  159 (159)
T ss_dssp             CCCCSCTTSTTSSS---CCC----------------CCSCSCCHHHHHHHHHHC
T ss_pred             CCCCCCCCceecce---ecC----------------CCCCCCCHHHHHHHHHhC
Confidence            55577889999864   210                112458999999999998

>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.44  E-value=0.61  Score=32.81  Aligned_cols=15  Identities=13%  Similarity=0.454  Sum_probs=13.1

Q ss_pred             CCCCHHHHHHHHhhC
Q psy13283         78 RGATEGDLEKVRQMY   92 (124)
Q Consensus        78 ~~lS~~Di~~IN~lY   92 (124)
                      ..|...||+.|..||
T Consensus       232 ~tp~~~DI~AiQ~LY  246 (246)
T d1kapp2         232 SAPLLDDIAAIQKLY  246 (246)
T ss_dssp             SSCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhC
Confidence            457889999999998

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.59  E-value=0.74  Score=29.40  Aligned_cols=15  Identities=20%  Similarity=0.501  Sum_probs=13.7

Q ss_pred             CCCHHHHHHHHhhCC
Q psy13283         79 GATEGDLEKVRQMYC   93 (124)
Q Consensus        79 ~lS~~Di~~IN~lY~   93 (124)
                      .|+..||..|+.||+
T Consensus       154 ~L~~~Di~~i~~LYG  168 (169)
T d1rm8a_         154 KLPNDDLQGIQKIYG  168 (169)
T ss_dssp             CCCHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHhhC
Confidence            589999999999995

>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrilysin (MMP-7)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.54  E-value=0.78  Score=29.80  Aligned_cols=15  Identities=13%  Similarity=0.519  Sum_probs=13.7

Q ss_pred             CCCHHHHHHHHhhCC
Q psy13283         79 GATEGDLEKVRQMYC   93 (124)
Q Consensus        79 ~lS~~Di~~IN~lY~   93 (124)
                      .|+..||+.|+.||+
T Consensus       151 ~l~~~Di~aiq~LYG  165 (166)
T d1mmqa_         151 KLSQDDIKGIQKLYG  165 (166)
T ss_dssp             CCCHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            589999999999995

>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Pseudomonas sp., tac ii 18 [TaxId: 306]

Probab=81.49  E-value=0.44  Score=33.39  Aligned_cols=41  Identities=17%  Similarity=0.149  Sum_probs=25.2

Q ss_pred             ccCCCCCCCcccCCCCCeEEecCCCCccCCcCCCCCHHHHHHHHhhCC
Q psy13283         46 QSVMHYPAKAFSKNGKDTIVAKKDPKAILGQRRGATEGDLEKVRQMYC   93 (124)
Q Consensus        46 ~SVMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~lS~~Di~~IN~lY~   93 (124)
                      .|||.|....-..  .    + .......+....|...||+.|..||.
T Consensus       202 ~SVMsY~~~~~~~--~----~-~~~~~~~~~~~tp~~~DIaAlQ~lYG  242 (242)
T d1g9ka2         202 YSVMSYWSEKNTG--Q----V-FTKTGEGAYASAPLLDDIAAVQKLYG  242 (242)
T ss_dssp             TCTTCSSCGGGGT--C----C-CCCTTCCCCCSSCCHHHHHHHHHHHC
T ss_pred             ceeecCCCccCCc--c----c-ccccccccccCCCCHHHHHHHHHhcC
Confidence            3999997543211  1    1 01112234446799999999999994