Psyllid ID: psy13301

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQYEEDLGGGGS
Secondary Structure (PSIPRED)
cEEEHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MLYIYTVIAFNFFRKfyvqeeddvvdkkchdmmTCFVFHLYKGvragggigdeigdpdgddyevyRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVkedmesncficgigkdyfdkvphgfdthvQQEHNLANYMFFLMHLinkpdteftgqETYVWNMYQQrcwdffpvgdcfrkqyeedlggggs
Flexible Loop (DISEMBL)
MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQYEEDLGGGGS
Low Complexity Region (SEG)
MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAgggigdeigdpdgddYEVYRiifditffffvivillaiiQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQYEEDLGGGGS
Disordered region (IsUnstruct)
*LYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQY*********
Disordered Region (DISOPRED)
MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGE**********DMESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVG****************
Disordered Region (DISEMBL)
MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQYE********
Disordered Region (DISPRO)
MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQYEEDL*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQYEEDLGGGGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
F1LMY4	5035	Ryanodine receptor 1 OS=R	yes	N/A	0.979	0.037	0.774	9e-95
Q9TS33	4872	Ryanodine receptor 3 OS=O	yes	N/A	0.979	0.038	0.774	2e-94
A2AGL3	4863	Ryanodine receptor 3 OS=M	yes	N/A	0.979	0.039	0.774	2e-94
Q15413	4870	Ryanodine receptor 3 OS=H	yes	N/A	0.979	0.039	0.774	2e-94
P11716	5037	Ryanodine receptor 1 OS=O	no	N/A	0.974	0.037	0.773	4e-94
E9PZQ0	5035	Ryanodine receptor 1 OS=M	no	N/A	0.974	0.037	0.773	4e-94
P21817	5038	Ryanodine receptor 1 OS=H	no	N/A	0.974	0.037	0.773	4e-94
P16960	5035	Ryanodine receptor 1 OS=S	yes	N/A	0.974	0.037	0.763	8e-93
Q24498	5127	Ryanodine receptor 44F OS	yes	N/A	0.974	0.036	0.910	2e-92
B0LPN4	4953	Ryanodine receptor 2 OS=R	no	N/A	0.974	0.038	0.778	6e-85

>sp|F1LMY4|RYR1_RAT Ryanodine receptor 1 OS=Rattus norvegicus GN=Ryr1 PE=2 SV=1

 Score =  345 bits (886), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 148/191 (77%), Positives = 168/191 (87%), Gaps = 1/191 (0%)

Query: 1    MLYIYTVIAFNFFRKFYVQEED-DVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDG 59
            ++Y+YTV+AFNFFRKFY + ED D  D KC DMMTC++FH+Y GVRAGGGIGDEI DP G
Sbjct: 4845 VVYLYTVVAFNFFRKFYNKSEDEDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4904

Query: 60   DDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
            D+YE+YR++FDITFFFFVIVILLAIIQGLIIDAFGELRDQ E VKEDME+ CFICGIG D
Sbjct: 4905 DEYELYRVVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKEDMETKCFICGIGSD 4964

Query: 120  YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
            YFD  PHGF+TH  +EHNLANYMFFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct: 4965 YFDTTPHGFETHTLEEHNLANYMFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 5024

Query: 180  CFRKQYEEDLG 190
            CFRKQYE+ LG
Sbjct: 5025 CFRKQYEDQLG 5035

Calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytoplasm and thereby plays a key role in triggering muscle contraction following depolarization of T-tubules. Repeated very high-level exercise increases the open probability of the channel and leads to Ca(2+) leaking into the cytoplasm. Can also mediate the release of Ca(2+) from intracellular stores in neurons, and may thereby promote prolonged Ca(2+) signaling in the brain. Required for normal embryonic development of muscle fibers and skeletal muscle. Required for normal heart morphogenesis, skin development and ossification during embryogenesis.
Rattus norvegicus (taxid: 10116)

>sp|Q9TS33|RYR3_RABIT Ryanodine receptor 3 OS=Oryctolagus cuniculus PE=1 SV=1

 Score =  344 bits (883), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 148/191 (77%), Positives = 168/191 (87%), Gaps = 1/191 (0%)

Query: 1    MLYIYTVIAFNFFRKFYVQ-EEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDG 59
            ++Y+YTV+AFNFFRKFY + E+DD  D KC DMMTC++FH+Y GVRAGGGIGDEI DP G
Sbjct: 4682 VVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4741

Query: 60   DDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
            D YE+YRI+FDITFFFFVIVILLAIIQGLIIDAFGELRDQ E V+EDME+ CFICGIG D
Sbjct: 4742 DPYEMYRIVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVREDMETKCFICGIGND 4801

Query: 120  YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
            YFD  PHGF+TH  QEHNLANY+FFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct: 4802 YFDTTPHGFETHTLQEHNLANYLFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 4861

Query: 180  CFRKQYEEDLG 190
            CFRKQYE+ LG
Sbjct: 4862 CFRKQYEDQLG 4872

Calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytoplasm in muscle and thereby plays a role in triggering muscle contraction. May regulate Ca(2+) release by other calcium channels. Calcium channel that mediates Ca(2+)-induced Ca(2+) release from the endoplasmic reticulum in non-muscle cells. Plays a role in cellular calcium signaling. Contributes to cellular calcium ion homeostasis. Isoform 2 lacks a predicted transmembrane segment and does not form functional calcium channels by itself; however, it can form tetramers with isoforms that contain the full complement of transmembrane segements and modulate their activity.

Oryctolagus cuniculus (taxid: 9986)

>sp|A2AGL3|RYR3_MOUSE Ryanodine receptor 3 OS=Mus musculus GN=Ryr3 PE=1 SV=1

 Score =  344 bits (883), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 148/191 (77%), Positives = 168/191 (87%), Gaps = 1/191 (0%)

Query: 1    MLYIYTVIAFNFFRKFYVQ-EEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDG 59
            ++Y+YTV+AFNFFRKFY + E+DD  D KC DMMTC++FH+Y GVRAGGGIGDEI DP G
Sbjct: 4673 VVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4732

Query: 60   DDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
            D YE+YRI+FDITFFFFVIVILLAIIQGLIIDAFGELRDQ E V+EDME+ CFICGIG D
Sbjct: 4733 DPYEMYRIVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVREDMETKCFICGIGND 4792

Query: 120  YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
            YFD  PHGF+TH  QEHNLANY+FFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct: 4793 YFDTTPHGFETHTLQEHNLANYLFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 4852

Query: 180  CFRKQYEEDLG 190
            CFRKQYE+ LG
Sbjct: 4853 CFRKQYEDQLG 4863

Calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytoplasm in muscle and thereby plays a role in triggering muscle contraction. May regulate Ca(2+) release by other calcium channels. Calcium channel that mediates Ca(2+)-induced Ca(2+) release from the endoplasmic reticulum in non-muscle cells. Plays a role in cellular calcium signaling. Contributes to cellular calcium ion homeostasis. Isoform 2 lacks a predicted transmembrane segment and does not form functional calcium channels by itself; however, it can form tetramers with isoforms that contain the full complement of transmembrane segements and modulate their activity.

Mus musculus (taxid: 10090)

>sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR3 PE=1 SV=3

 Score =  344 bits (883), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 148/191 (77%), Positives = 168/191 (87%), Gaps = 1/191 (0%)

Query: 1    MLYIYTVIAFNFFRKFYVQ-EEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDG 59
            ++Y+YTV+AFNFFRKFY + E+DD  D KC DMMTC++FH+Y GVRAGGGIGDEI DP G
Sbjct: 4680 VVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4739

Query: 60   DDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
            D YE+YRI+FDITFFFFVIVILLAIIQGLIIDAFGELRDQ E V+EDME+ CFICGIG D
Sbjct: 4740 DPYEMYRIVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVREDMETKCFICGIGND 4799

Query: 120  YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
            YFD  PHGF+TH  QEHNLANY+FFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct: 4800 YFDTTPHGFETHTLQEHNLANYLFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 4859

Query: 180  CFRKQYEEDLG 190
            CFRKQYE+ LG
Sbjct: 4860 CFRKQYEDQLG 4870

Calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytoplasm in muscle and thereby plays a role in triggering muscle contraction. May regulate Ca(2+) release by other calcium channels. Calcium channel that mediates Ca(2+)-induced Ca(2+) release from the endoplasmic reticulum in non-muscle cells. Contributes to cellular calcium ion homeostasis (By similarity). Plays a role in cellular calcium signaling.

Homo sapiens (taxid: 9606)

>sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cuniculus GN=RYR1 PE=1 SV=1

 Score =  343 bits (880), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 147/190 (77%), Positives = 167/190 (87%), Gaps = 1/190 (0%)

Query: 1    MLYIYTVIAFNFFRKFYVQEED-DVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDG 59
            ++Y+YTV+AFNFFRKFY + ED D  D KC DMMTC++FH+Y GVRAGGGIGDEI DP G
Sbjct: 4847 VVYLYTVVAFNFFRKFYNKSEDEDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4906

Query: 60   DDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
            D+YE+YR++FDITFFFFVIVILLAIIQGLIIDAFGELRDQ E VKEDME+ CFICGIG D
Sbjct: 4907 DEYELYRVVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKEDMETKCFICGIGSD 4966

Query: 120  YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
            YFD  PHGF+TH  +EHNLANYMFFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct: 4967 YFDTTPHGFETHTLEEHNLANYMFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 5026

Query: 180  CFRKQYEEDL 189
            CFRKQYE+ L
Sbjct: 5027 CFRKQYEDQL 5036

Calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytoplasm and thereby plays a key role in triggering muscle contraction following depolarization of T-tubules. Repeated very high-level exercise increases the open probability of the channel and leads to Ca(2+) leaking into the cytoplasm. Can also mediate the release of Ca(2+) from intracellular stores in neurons, and may thereby promote prolonged Ca(2+) signaling in the brain. Required for normal embryonic development of muscle fibers and skeletal muscle. Required for normal heart morphogenesis, skin development and ossification during embryogenesis.

Oryctolagus cuniculus (taxid: 9986)

>sp|E9PZQ0|RYR1_MOUSE Ryanodine receptor 1 OS=Mus musculus GN=Ryr1 PE=1 SV=1

 Score =  343 bits (880), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 147/190 (77%), Positives = 167/190 (87%), Gaps = 1/190 (0%)

Query: 1    MLYIYTVIAFNFFRKFYVQEED-DVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDG 59
            ++Y+YTV+AFNFFRKFY + ED D  D KC DMMTC++FH+Y GVRAGGGIGDEI DP G
Sbjct: 4845 VVYLYTVVAFNFFRKFYNKSEDEDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4904

Query: 60   DDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
            D+YE+YR++FDITFFFFVIVILLAIIQGLIIDAFGELRDQ E VKEDME+ CFICGIG D
Sbjct: 4905 DEYELYRVVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKEDMETKCFICGIGSD 4964

Query: 120  YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
            YFD  PHGF+TH  +EHNLANYMFFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct: 4965 YFDTTPHGFETHTLEEHNLANYMFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 5024

Query: 180  CFRKQYEEDL 189
            CFRKQYE+ L
Sbjct: 5025 CFRKQYEDQL 5034

Calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytoplasm and thereby plays a key role in triggering muscle contraction following depolarization of T-tubules. Repeated very high-level exercise increases the open probability of the channel and leads to Ca(2+) leaking into the cytoplasm. Can also mediate the release of Ca(2+) from intracellular stores in neurons, and may thereby promote prolonged Ca(2+) signaling in the brain. Required for normal embryonic development of muscle fibers and skeletal muscle. Required for normal heart morphogenesis, skin development and ossification during embryogenesis.

Mus musculus (taxid: 10090)

>sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR1 PE=1 SV=3

 Score =  343 bits (880), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 147/190 (77%), Positives = 167/190 (87%), Gaps = 1/190 (0%)

Query: 1    MLYIYTVIAFNFFRKFYVQEED-DVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDG 59
            ++Y+YTV+AFNFFRKFY + ED D  D KC DMMTC++FH+Y GVRAGGGIGDEI DP G
Sbjct: 4848 VVYLYTVVAFNFFRKFYNKSEDEDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4907

Query: 60   DDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
            D+YE+YR++FDITFFFFVIVILLAIIQGLIIDAFGELRDQ E VKEDME+ CFICGIG D
Sbjct: 4908 DEYELYRVVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKEDMETKCFICGIGSD 4967

Query: 120  YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
            YFD  PHGF+TH  +EHNLANYMFFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct: 4968 YFDTTPHGFETHTLEEHNLANYMFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 5027

Query: 180  CFRKQYEEDL 189
            CFRKQYE+ L
Sbjct: 5028 CFRKQYEDQL 5037

Calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytoplasm and thereby plays a key role in triggering muscle contraction following depolarization of T-tubules. Repeated very high-level exercise increases the open probability of the channel and leads to Ca(2+) leaking into the cytoplasm. Can also mediate the release of Ca(2+) from intracellular stores in neurons, and may thereby promote prolonged Ca(2+) signaling in the brain. Required for normal embryonic development of muscle fibers and skeletal muscle. Required for normal heart morphogenesis, skin development and ossification during embryogenesis.

Homo sapiens (taxid: 9606)

>sp|P16960|RYR1_PIG Ryanodine receptor 1 OS=Sus scrofa GN=RYR1 PE=2 SV=2

 Score =  339 bits (869), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 145/190 (76%), Positives = 166/190 (87%), Gaps = 1/190 (0%)

Query: 1    MLYIYTVIAFNFFRKFYVQEED-DVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDG 59
            ++Y+YTV+AFNFFRKFY + ED D  D KC DMMTC++FH+Y GVRAGGGIGDEI DP G
Sbjct: 4845 VVYLYTVVAFNFFRKFYNKSEDEDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4904

Query: 60   DDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
            D+YE+YR++FDITFFFFVIVILLAIIQGLIIDAFGELRDQ E V+EDME+ CFICGIG D
Sbjct: 4905 DEYELYRVVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVREDMETKCFICGIGSD 4964

Query: 120  YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
            YFD  PH F+TH  +EHNLANYMFFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct: 4965 YFDTTPHRFETHTLEEHNLANYMFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 5024

Query: 180  CFRKQYEEDL 189
            CFRKQYE+ L
Sbjct: 5025 CFRKQYEDQL 5034

Calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytoplasm and thereby plays a key role in triggering muscle contraction following depolarization of T-tubules. Repeated very high-level exercise increases the open probability of the channel and leads to Ca(2+) leaking into the cytoplasm. Can also mediate the release of Ca(2+) from intracellular stores in neurons, and may thereby promote prolonged Ca(2+) signaling in the brain. Required for normal embryonic development of muscle fibers and skeletal muscle. Required for normal heart morphogenesis, skin development and ossification during embryogenesis.

Sus scrofa (taxid: 9823)

>sp|Q24498|RY44_DROME Ryanodine receptor 44F OS=Drosophila melanogaster GN=Rya-r44F PE=1 SV=3

 Score =  338 bits (866), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 172/189 (91%), Positives = 186/189 (98%)

Query: 1    MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGD 60
            ++YIYTVIAFNFFRKFY+QEED+ VDKKCHDM+TCFVFHLYKGVRAGGGIGDEIGDPDGD
Sbjct: 4932 IVYIYTVIAFNFFRKFYIQEEDEEVDKKCHDMLTCFVFHLYKGVRAGGGIGDEIGDPDGD 4991

Query: 61   DYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDY 120
            DYEVYRIIFDITFFFFVI+ILLAIIQGLIIDAFGELRDQLESVK++MESNCFICG+GKD+
Sbjct: 4992 DYEVYRIIFDITFFFFVIIILLAIIQGLIIDAFGELRDQLESVKDNMESNCFICGMGKDF 5051

Query: 121  FDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDC 180
            FD VPHGFDTHVQ+EHNLANYMFFLMHLINKPDTE+TGQETYVWNMYQQR WDFFPVGDC
Sbjct: 5052 FDIVPHGFDTHVQKEHNLANYMFFLMHLINKPDTEYTGQETYVWNMYQQRSWDFFPVGDC 5111

Query: 181  FRKQYEEDL 189
            FRKQYE++L
Sbjct: 5112 FRKQYEDEL 5120

Intracellular calcium channel that is required for proper muscle function during embryonic development and may be essential for excitation-contraction coupling in larval body wall muscles.

Drosophila melanogaster (taxid: 7227)

>sp|B0LPN4|RYR2_RAT Ryanodine receptor 2 OS=Rattus norvegicus GN=Ryr2 PE=1 SV=2

 Score =  313 bits (801), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 148/190 (77%), Positives = 168/190 (88%), Gaps = 1/190 (0%)

Query: 1    MLYIYTVIAFNFFRKFYVQEED-DVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDG 59
            ++Y+YTV+AFNFFRKFY + ED D  D KC DM+TC++FH+Y GVRAGGGIGDEI DP G
Sbjct: 4763 VVYLYTVVAFNFFRKFYNKSEDGDTPDMKCDDMLTCYMFHMYVGVRAGGGIGDEIEDPAG 4822

Query: 60   DDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
            D+YE+YRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQ E VKEDME+ CFICGIG D
Sbjct: 4823 DEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKEDMETKCFICGIGND 4882

Query: 120  YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
            YFD VPHGF+TH  QEHNLANY+FFLM+LINK +TE TGQE+YVW MYQ+RCW+FFP GD
Sbjct: 4883 YFDTVPHGFETHTLQEHNLANYLFFLMYLINKDETEHTGQESYVWKMYQERCWEFFPAGD 4942

Query: 180  CFRKQYEEDL 189
            CFRKQYE+ L
Sbjct: 4943 CFRKQYEDQL 4952

Calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytoplasm and thereby plays a key role in triggering cardiac muscle contraction. Aberrant channel activation can lead to cardiac arrhythmia. In cardiac myocytes, calcium release is triggered by increased Ca(2+) levels due to activation of the L-type calcium channel CACNA1C. The calcium channel activity is modulated by formation of heterotetramers with RYR3. Required for cellular calcium ion homeostasis. Required for embryonic heart development.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
389568471	5115	ryanodine receptor [Laodelphax striatell	0.994	0.037	0.937	1e-115
242007439	5058	Ryanodine receptor, putative [Pediculus	1.0	0.038	0.922	1e-113
270003382	4986	hypothetical protein TcasGA2_TC002610 [T	0.974	0.037	0.936	1e-111
389568467	5142	ryanodine receptor [Bemisia tabaci]	0.974	0.036	0.920	1e-110
119112859	5109	AGAP010750-PA [Anopheles gambiae str. PE	1.0	0.037	0.923	1e-105
328717378	5101	PREDICTED: ryanodine receptor 44F-like i	0.963	0.036	0.957	1e-103
157138486	5118	ryanodine receptor 3, brain [Aedes aegyp	1.0	0.037	0.908	1e-103
312373790	2050	hypothetical protein AND_16999 [Anophele	1.0	0.094	0.918	1e-102
383851977	5084	PREDICTED: ryanodine receptor 44F-like [	0.958	0.036	0.919	1e-101
328789627	5082	PREDICTED: ryanodine receptor 44F [Apis	0.958	0.036	0.919	1e-101

>gi|389568471|gb|AFK84959.1| ryanodine receptor [Laodelphax striatella]

 Score =  417 bits (1073), Expect = e-115,   Method: Composition-based stats.
 Identities = 181/193 (93%), Positives = 190/193 (98%)

Query: 1    MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGD 60
            ++YIYTVIAFNFFRKFYVQEED+ +DKKCHDM+TCFVFHLYKGVRAGGGIGDEI  PDGD
Sbjct: 4922 IVYIYTVIAFNFFRKFYVQEEDEEIDKKCHDMLTCFVFHLYKGVRAGGGIGDEIEPPDGD 4981

Query: 61   DYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDY 120
            DYEVYRI+FDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDY
Sbjct: 4982 DYEVYRIMFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDY 5041

Query: 121  FDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDC 180
            FDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTE+TGQETYVWNMYQQRCWDFFPVGDC
Sbjct: 5042 FDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEYTGQETYVWNMYQQRCWDFFPVGDC 5101

Query: 181  FRKQYEEDLGGGG 193
            FRKQYE++LGGGG
Sbjct: 5102 FRKQYEDELGGGG 5114

Source: Laodelphax striatella

Species: Laodelphax striatella

Genus: Laodelphax

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007439|ref|XP_002424547.1| Ryanodine receptor, putative [Pediculus humanus corporis] gi|212507990|gb|EEB11809.1| Ryanodine receptor, putative [Pediculus humanus corporis]

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/194 (92%), Positives = 189/194 (97%)

Query: 1    MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGD 60
            ++YIYTVIAFNFFRKFYVQEEDD VDKKCH+M+TCFVFHLYKGVRAGGGIGDEI  PDGD
Sbjct: 4865 IVYIYTVIAFNFFRKFYVQEEDDEVDKKCHNMLTCFVFHLYKGVRAGGGIGDEIEPPDGD 4924

Query: 61   DYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDY 120
            +YEVYRI+FDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDY
Sbjct: 4925 EYEVYRILFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDY 4984

Query: 121  FDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDC 180
            FDKVPHGFDTHV QEHNLANYMFFLMHLINKPDTE+TGQETYVWNMYQQRCWDFFPVGDC
Sbjct: 4985 FDKVPHGFDTHVAQEHNLANYMFFLMHLINKPDTEYTGQETYVWNMYQQRCWDFFPVGDC 5044

Query: 181  FRKQYEEDLGGGGS 194
            FRKQYE++LGGG +
Sbjct: 5045 FRKQYEDELGGGNN 5058

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003382|gb|EEZ99829.1| hypothetical protein TcasGA2_TC002610 [Tribolium castaneum]

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/189 (93%), Positives = 186/189 (98%)

Query: 1    MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGD 60
            ++YIYTVIAFNFFRKFYVQEED+ VDKKCHDM+TCFVFHLYKGVRAGGGIGDEI  PDGD
Sbjct: 4793 VVYIYTVIAFNFFRKFYVQEEDEEVDKKCHDMLTCFVFHLYKGVRAGGGIGDEIEPPDGD 4852

Query: 61   DYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDY 120
            DYEVYRI+FDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICG+GK+Y
Sbjct: 4853 DYEVYRIMFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGMGKEY 4912

Query: 121  FDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDC 180
            FDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTE+TGQETYVWNMYQQRCWDFFPVGDC
Sbjct: 4913 FDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEYTGQETYVWNMYQQRCWDFFPVGDC 4972

Query: 181  FRKQYEEDL 189
            FRKQYEE+L
Sbjct: 4973 FRKQYEEEL 4981

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389568467|gb|AFK84957.1| ryanodine receptor [Bemisia tabaci]

 Score =  401 bits (1030), Expect = e-110,   Method: Composition-based stats.
 Identities = 174/189 (92%), Positives = 183/189 (96%)

Query: 1    MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGD 60
            ++YIYTVIAFNFFRKFY QEEDD VD KCH+M+TCFVFHLYKGVRAGGGIGDEI  PDGD
Sbjct: 4949 IVYIYTVIAFNFFRKFYAQEEDDNVDMKCHNMLTCFVFHLYKGVRAGGGIGDEIEPPDGD 5008

Query: 61   DYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDY 120
            DYEVYRI+FDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVK+DMESNCFICGIGKD+
Sbjct: 5009 DYEVYRIMFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKDDMESNCFICGIGKDF 5068

Query: 121  FDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDC 180
            FD VPHGFDTHVQQEHNLANYMFFLMHLINKPDTE+TGQETYVWNMYQQRCWDFFPVGDC
Sbjct: 5069 FDTVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEYTGQETYVWNMYQQRCWDFFPVGDC 5128

Query: 181  FRKQYEEDL 189
            FRKQYEE+L
Sbjct: 5129 FRKQYEEEL 5137

Source: Bemisia tabaci

Species: Bemisia tabaci

Genus: Bemisia

Family: Aleyrodidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119112859|ref|XP_318561.3| AGAP010750-PA [Anopheles gambiae str. PEST] gi|116118655|gb|EAA13701.4| AGAP010750-PA [Anopheles gambiae str. PEST]

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 181/196 (92%), Positives = 190/196 (96%), Gaps = 2/196 (1%)

Query: 1    MLYIYTVIAFNFFRKFYVQEEDDVV--DKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPD 58
            ++YIYTVIAFNFFRKFYVQE+DD    D+KCHDM TCFVFHLYKGVRAGGGIGDEIGDPD
Sbjct: 4914 IVYIYTVIAFNFFRKFYVQEDDDGEEGDRKCHDMATCFVFHLYKGVRAGGGIGDEIGDPD 4973

Query: 59   GDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGK 118
            GD+YEVYRI+FDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGK
Sbjct: 4974 GDEYEVYRILFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGK 5033

Query: 119  DYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVG 178
            DYFDKVPHGFDTHV QEHNLANYMFFLMHLINKPDTE+TGQETYVWNMYQQRCWDFFPVG
Sbjct: 5034 DYFDKVPHGFDTHVAQEHNLANYMFFLMHLINKPDTEYTGQETYVWNMYQQRCWDFFPVG 5093

Query: 179  DCFRKQYEEDLGGGGS 194
            DCFRKQYE++LGGGGS
Sbjct: 5094 DCFRKQYEDELGGGGS 5109

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328717378|ref|XP_003246190.1| PREDICTED: ryanodine receptor 44F-like isoform 1 [Acyrthosiphon pisum] gi|328717380|ref|XP_003246191.1| PREDICTED: ryanodine receptor 44F-like isoform 2 [Acyrthosiphon pisum]

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 179/187 (95%), Positives = 185/187 (98%)

Query: 3    YIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDY 62
            YIYTVIAFNFFRKFYVQEEDD VDKKCHDM+TCFVFHLYKGVRAGGGIGDEIG PDGDDY
Sbjct: 4909 YIYTVIAFNFFRKFYVQEEDDEVDKKCHDMLTCFVFHLYKGVRAGGGIGDEIGSPDGDDY 4968

Query: 63   EVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDYFD 122
            EVYRI+FDITFFFFVI+ILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDYFD
Sbjct: 4969 EVYRIMFDITFFFFVIIILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDYFD 5028

Query: 123  KVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFR 182
            KVPHGFDTHVQ+EHNLANYMFFLMHLINKPDTE+TGQETYVWNMYQQRCWDFFPVGDCFR
Sbjct: 5029 KVPHGFDTHVQEEHNLANYMFFLMHLINKPDTEYTGQETYVWNMYQQRCWDFFPVGDCFR 5088

Query: 183  KQYEEDL 189
            KQYEE+L
Sbjct: 5089 KQYEEEL 5095

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157138486|ref|XP_001657320.1| ryanodine receptor 3, brain [Aedes aegypti] gi|108880639|gb|EAT44864.1| AAEL003837-PA [Aedes aegypti]

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/196 (90%), Positives = 189/196 (96%), Gaps = 2/196 (1%)

Query: 1    MLYIYTVIAFNFFRKFYVQEEDDVV--DKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPD 58
            ++YIYTVIAFNFFRKFY+QE+DD    D+KCHDM TCFVFHLYKGVRAGGGIGDEIGDPD
Sbjct: 4923 IVYIYTVIAFNFFRKFYIQEDDDGEEGDRKCHDMGTCFVFHLYKGVRAGGGIGDEIGDPD 4982

Query: 59   GDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGK 118
            GD+YEVYRI+FDI+FFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGK
Sbjct: 4983 GDEYEVYRILFDISFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGK 5042

Query: 119  DYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVG 178
            DYFDKVPHGFDTHV QEHNLANYMFFLMHLINKPDTE+TGQETYVWNMYQQRCWDFFPVG
Sbjct: 5043 DYFDKVPHGFDTHVAQEHNLANYMFFLMHLINKPDTEYTGQETYVWNMYQQRCWDFFPVG 5102

Query: 179  DCFRKQYEEDLGGGGS 194
            DCFRKQYE++L GGGS
Sbjct: 5103 DCFRKQYEDELSGGGS 5118

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373790|gb|EFR21476.1| hypothetical protein AND_16999 [Anopheles darlingi]

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 180/196 (91%), Positives = 190/196 (96%), Gaps = 2/196 (1%)

Query: 1    MLYIYTVIAFNFFRKFYVQEEDDVV--DKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPD 58
            ++YIYTVIAFNFFRKFY+QE+DD    D+KCHDM TCFVFHLYKGVRAGGGIGDEIGDPD
Sbjct: 1855 IVYIYTVIAFNFFRKFYIQEDDDGEEGDRKCHDMATCFVFHLYKGVRAGGGIGDEIGDPD 1914

Query: 59   GDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGK 118
            GD+YEVYRI+FDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGK
Sbjct: 1915 GDEYEVYRILFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGK 1974

Query: 119  DYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVG 178
            DYFDKVPHGFDTHV QEHNLANYMFFLMHLINKPDTE+TGQETYVWNMYQQRCWDFFPVG
Sbjct: 1975 DYFDKVPHGFDTHVAQEHNLANYMFFLMHLINKPDTEYTGQETYVWNMYQQRCWDFFPVG 2034

Query: 179  DCFRKQYEEDLGGGGS 194
            DCFRKQYE++LGGGGS
Sbjct: 2035 DCFRKQYEDELGGGGS 2050

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851977|ref|XP_003701507.1| PREDICTED: ryanodine receptor 44F-like [Megachile rotundata]

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/186 (91%), Positives = 182/186 (97%)

Query: 1    MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGD 60
            ++YIYTVIAFNFFRKFY+QEEDD VDKKCHDM+TCFVFHLYKGVRAGGGIGDEIG+PDGD
Sbjct: 4890 VVYIYTVIAFNFFRKFYIQEEDDEVDKKCHDMLTCFVFHLYKGVRAGGGIGDEIGEPDGD 4949

Query: 61   DYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDY 120
            DYEVYRI+FDITFFFFVIVILLAIIQGLIIDAFGELRDQLE+VK +MESNCFICG+GK+Y
Sbjct: 4950 DYEVYRIMFDITFFFFVIVILLAIIQGLIIDAFGELRDQLENVKTNMESNCFICGLGKEY 5009

Query: 121  FDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDC 180
            FD VPHGFDTHVQQEHNLANYMFFLMHLINKPDTE+TGQETYVWNMYQQRCWDFFPVGDC
Sbjct: 5010 FDTVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEYTGQETYVWNMYQQRCWDFFPVGDC 5069

Query: 181  FRKQYE 186
            FRKQ E
Sbjct: 5070 FRKQNE 5075

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789627|ref|XP_392217.4| PREDICTED: ryanodine receptor 44F [Apis mellifera]

 Score =  371 bits (952), Expect = e-101,   Method: Composition-based stats.
 Identities = 171/186 (91%), Positives = 182/186 (97%)

Query: 1    MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGD 60
            ++YIYTVIAFNFFRKFY+QEEDD VDKKCHDM+TCFVFHLYKGVRAGGGIGDEIG+PDGD
Sbjct: 4888 VVYIYTVIAFNFFRKFYIQEEDDEVDKKCHDMLTCFVFHLYKGVRAGGGIGDEIGEPDGD 4947

Query: 61   DYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDY 120
            DYEVYRI+FDITFFFFVIVILLAIIQGLIIDAFGELRDQLE+VK +MESNCFICG+GK+Y
Sbjct: 4948 DYEVYRIMFDITFFFFVIVILLAIIQGLIIDAFGELRDQLENVKTNMESNCFICGLGKEY 5007

Query: 121  FDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDC 180
            FD VPHGFDTHVQQEHNLANYMFFLMHLINKPDTE+TGQETYVWNMYQQRCWDFFPVGDC
Sbjct: 5008 FDTVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEYTGQETYVWNMYQQRCWDFFPVGDC 5067

Query: 181  FRKQYE 186
            FRKQ E
Sbjct: 5068 FRKQNE 5073

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
FB|FBgn0011286	5127	Rya-r44F "Ryanodine receptor 4	0.994	0.037	0.735	7.5e-76
UNIPROTKB|F8WG77	615	F8WG77 "Uncharacterized protei	0.979	0.308	0.617	2.3e-64
ZFIN|ZDB-GENE-041001-165	4864	ryr3 "ryanodine receptor 3" [D	0.979	0.039	0.623	6.2e-63
ZFIN|ZDB-GENE-070705-417	5076	ryr1b "ryanodine receptor 1b (	0.979	0.037	0.612	1.4e-62
UNIPROTKB|F1LRP1	5031	Ryr1 "Uncharacterized protein"	0.979	0.037	0.623	1.7e-62
RGD|1586637	5035	Ryr1 "ryanodine receptor 1 (sk	0.979	0.037	0.623	1.7e-62
ZFIN|ZDB-GENE-020108-2	5056	ryr1a "ryanodine receptor 1a (	0.979	0.037	0.623	1.7e-62
UNIPROTKB|J9P355	4632	RYR3 "Uncharacterized protein"	0.979	0.041	0.617	2.5e-62
UNIPROTKB|F1PJL2	4813	RYR3 "Uncharacterized protein"	0.979	0.039	0.617	2.7e-62
UNIPROTKB|F1LPJ2	4839	F1LPJ2 "Uncharacterized protei	0.979	0.039	0.617	2.7e-62

FB|FBgn0011286 Rya-r44F "Ryanodine receptor 44F" [Drosophila melanogaster (taxid:7227)]

 Score = 784 (281.0 bits), Expect = 7.5e-76, P = 7.5e-76
 Identities = 142/193 (73%), Positives = 155/193 (80%)

Query:     1 MLYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAXXXXXXXXXXXXXX 60
             ++YIYTVIAFNFFRKFY+QEED+ VDKKCHDM+TCFVFHLYKGVRA              
Sbjct:  4932 IVYIYTVIAFNFFRKFYIQEEDEEVDKKCHDMLTCFVFHLYKGVRAGGGIGDEIGDPDGD 4991

Query:    61 XYEVYRXXXXXXXXXXXXXXXXXXXQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDY 120
              YEVYR                   QGLIIDAFGELRDQLESVK++MESNCFICG+GKD+
Sbjct:  4992 DYEVYRIIFDITFFFFVIIILLAIIQGLIIDAFGELRDQLESVKDNMESNCFICGMGKDF 5051

Query:   121 FDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDC 180
             FD VPHGFDTHVQ+EHNLANYMFFLMHLINKPDTE+TGQETYVWNMYQQR WDFFPVGDC
Sbjct:  5052 FDIVPHGFDTHVQKEHNLANYMFFLMHLINKPDTEYTGQETYVWNMYQQRSWDFFPVGDC 5111

Query:   181 FRKQYEEDLGGGG 193
             FRKQYE++L GGG
Sbjct:  5112 FRKQYEDELSGGG 5124

GO:0006816 "calcium ion transport" evidence=TAS

GO:0005219 "ryanodine-sensitive calcium-release channel activity" evidence=ISS;NAS;TAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0005789 "endoplasmic reticulum membrane" evidence=NAS

GO:0006936 "muscle contraction" evidence=IMP

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0035206 "regulation of hemocyte proliferation" evidence=IMP

UNIPROTKB|F8WG77 F8WG77 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 118/191 (61%), Positives = 137/191 (71%)

Query:     1 MLYIYTVIAFNFFRKFYVQ-EEDDVVDKKCHDMMTCFVFHLYKGVRAXXXXXXXXXXXXX 59
             ++Y+YTV+AFNFFRKFY + E+DD  D KC DMMTC++FH+Y GVRA             
Sbjct:   425 VVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 484

Query:    60 XXYEVYRXXXXXXXXXXXXXXXXXXXQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
               YE+YR                   QGLIIDAFGELRDQ E V+EDME+ CFICGIG D
Sbjct:   485 DPYEMYRIVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVREDMETKCFICGIGND 544

Query:   120 YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
             YFD  PHGF+TH  QEHNLANY+FFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct:   545 YFDTTPHGFETHTLQEHNLANYLFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 604

Query:   180 CFRKQYEEDLG 190
             CFRKQYE+ LG
Sbjct:   605 CFRKQYEDQLG 615

GO:0005219 "ryanodine-sensitive calcium-release channel activity" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-041001-165 ryr3 "ryanodine receptor 3" [Danio rerio (taxid:7955)]

 Score = 662 (238.1 bits), Expect = 6.2e-63, P = 6.2e-63
 Identities = 119/191 (62%), Positives = 137/191 (71%)

Query:     1 MLYIYTVIAFNFFRKFYVQEED-DVVDKKCHDMMTCFVFHLYKGVRAXXXXXXXXXXXXX 59
             ++Y+YTV+AFNFFRKFY + ED D  D KC DMMTC++FH+Y GVRA             
Sbjct:  4674 VVYLYTVVAFNFFRKFYNKSEDEDAPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4733

Query:    60 XXYEVYRXXXXXXXXXXXXXXXXXXXQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
               YE+YR                   QGLIIDAFGELRDQ E VKEDME+ CFICGIG D
Sbjct:  4734 DPYELYRILFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKEDMETKCFICGIGND 4793

Query:   120 YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
             YFD+ PHGF+TH  QEHNLANY+FFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct:  4794 YFDRTPHGFETHTLQEHNLANYLFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 4853

Query:   180 CFRKQYEEDLG 190
             CFRKQYE+ LG
Sbjct:  4854 CFRKQYEDQLG 4864

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005219 "ryanodine-sensitive calcium-release channel activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0006810 "transport" evidence=IEA

ZFIN|ZDB-GENE-070705-417 ryr1b "ryanodine receptor 1b (skeletal)" [Danio rerio (taxid:7955)]

 Score = 659 (237.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 117/191 (61%), Positives = 137/191 (71%)

Query:     1 MLYIYTVIAFNFFRKFY-VQEEDDVVDKKCHDMMTCFVFHLYKGVRAXXXXXXXXXXXXX 59
             ++Y+YTV+AFNFFRKFY + E++D  D KC DMMTC++FH+Y GVRA             
Sbjct:  4886 VVYLYTVVAFNFFRKFYNMSEDEDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4945

Query:    60 XXYEVYRXXXXXXXXXXXXXXXXXXXQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
               YE+YR                   QGLIIDAFGELRDQ E V+EDME+ CFICGIG D
Sbjct:  4946 DEYELYRVVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVREDMETKCFICGIGSD 5005

Query:   120 YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
             YFD  PHGF+TH  +EHNLANYMFFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct:  5006 YFDSTPHGFETHTMEEHNLANYMFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 5065

Query:   180 CFRKQYEEDLG 190
             CFRKQYE+ LG
Sbjct:  5066 CFRKQYEDQLG 5076

GO:0005216 "ion channel activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005219 "ryanodine-sensitive calcium-release channel activity" evidence=IEA;IMP

GO:0006811 "ion transport" evidence=IEA

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0031443 "fast-twitch skeletal muscle fiber contraction" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0008345 "larval locomotory behavior" evidence=IMP

UNIPROTKB|F1LRP1 Ryr1 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 658 (236.7 bits), Expect = 1.7e-62, P = 1.7e-62
 Identities = 119/191 (62%), Positives = 136/191 (71%)

Query:     1 MLYIYTVIAFNFFRKFYVQEED-DVVDKKCHDMMTCFVFHLYKGVRAXXXXXXXXXXXXX 59
             ++Y+YTV+AFNFFRKFY + ED D  D KC DMMTC++FH+Y GVRA             
Sbjct:  4841 VVYLYTVVAFNFFRKFYNKSEDEDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4900

Query:    60 XXYEVYRXXXXXXXXXXXXXXXXXXXQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
               YE+YR                   QGLIIDAFGELRDQ E VKEDME+ CFICGIG D
Sbjct:  4901 DEYELYRVVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKEDMETKCFICGIGSD 4960

Query:   120 YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
             YFD  PHGF+TH  +EHNLANYMFFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct:  4961 YFDTTPHGFETHTLEEHNLANYMFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 5020

Query:   180 CFRKQYEEDLG 190
             CFRKQYE+ LG
Sbjct:  5021 CFRKQYEDQLG 5031

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1586637 Ryr1 "ryanodine receptor 1 (skeletal)" [Rattus norvegicus (taxid:10116)]

 Score = 658 (236.7 bits), Expect = 1.7e-62, P = 1.7e-62
 Identities = 119/191 (62%), Positives = 136/191 (71%)

Query:     1 MLYIYTVIAFNFFRKFYVQEED-DVVDKKCHDMMTCFVFHLYKGVRAXXXXXXXXXXXXX 59
             ++Y+YTV+AFNFFRKFY + ED D  D KC DMMTC++FH+Y GVRA             
Sbjct:  4845 VVYLYTVVAFNFFRKFYNKSEDEDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4904

Query:    60 XXYEVYRXXXXXXXXXXXXXXXXXXXQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
               YE+YR                   QGLIIDAFGELRDQ E VKEDME+ CFICGIG D
Sbjct:  4905 DEYELYRVVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKEDMETKCFICGIGSD 4964

Query:   120 YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
             YFD  PHGF+TH  +EHNLANYMFFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct:  4965 YFDTTPHGFETHTLEEHNLANYMFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 5024

Query:   180 CFRKQYEEDLG 190
             CFRKQYE+ LG
Sbjct:  5025 CFRKQYEDQLG 5035

GO:0001666 "response to hypoxia" evidence=IEA;ISO

GO:0002020 "protease binding" evidence=IEA;ISO

GO:0003151 "outflow tract morphogenesis" evidence=ISO;ISS

GO:0005219 "ryanodine-sensitive calcium-release channel activity" evidence=IEA;ISO;ISS;IDA

GO:0005245 "voltage-gated calcium channel activity" evidence=ISO;ISS

GO:0005262 "calcium channel activity" evidence=ISO;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005938 "cell cortex" evidence=IEA;ISO

GO:0006816 "calcium ion transport" evidence=ISO;IDA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0006936 "muscle contraction" evidence=ISO;ISS

GO:0014808 "release of sequestered calcium ion into cytosol by sarcoplasmic reticulum" evidence=ISO;ISS

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=ISO;IDA

GO:0030314 "junctional membrane complex" evidence=IEA;ISO

GO:0030315 "T-tubule" evidence=IEA;ISO

GO:0031000 "response to caffeine" evidence=IDA

GO:0031674 "I band" evidence=IEA;ISO

GO:0033017 "sarcoplasmic reticulum membrane" evidence=ISO;IDA

GO:0042383 "sarcolemma" evidence=IDA

GO:0043234 "protein complex" evidence=ISO

GO:0043588 "skin development" evidence=ISO;ISS

GO:0043931 "ossification involved in bone maturation" evidence=ISO;ISS

GO:0048741 "skeletal muscle fiber development" evidence=ISO;ISS

GO:0051209 "release of sequestered calcium ion into cytosol" evidence=ISO;IDA

GO:0051480 "cytosolic calcium ion homeostasis" evidence=IDA

GO:0070296 "sarcoplasmic reticulum calcium ion transport" evidence=IDA

GO:0070588 "calcium ion transmembrane transport" evidence=ISO

GO:0071313 "cellular response to caffeine" evidence=ISO;ISS

ZFIN|ZDB-GENE-020108-2 ryr1a "ryanodine receptor 1a (skeletal)" [Danio rerio (taxid:7955)]

 Score = 658 (236.7 bits), Expect = 1.7e-62, P = 1.7e-62
 Identities = 119/191 (62%), Positives = 136/191 (71%)

Query:     1 MLYIYTVIAFNFFRKFYVQEED-DVVDKKCHDMMTCFVFHLYKGVRAXXXXXXXXXXXXX 59
             ++Y+YTV+AFNFFRKFY + ED D  D KC DMMTC++FH+Y GVRA             
Sbjct:  4866 VVYLYTVVAFNFFRKFYNKSEDEDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4925

Query:    60 XXYEVYRXXXXXXXXXXXXXXXXXXXQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
               YE+YR                   QGLIIDAFGELRDQ E VKEDME+ CFICGIG D
Sbjct:  4926 DEYELYRVVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVKEDMETKCFICGIGSD 4985

Query:   120 YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
             YFD  PHGF+TH  +EHNLANYMFFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct:  4986 YFDTTPHGFETHTLEEHNLANYMFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 5045

Query:   180 CFRKQYEEDLG 190
             CFRKQYE+ LG
Sbjct:  5046 CFRKQYEDQLG 5056

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005219 "ryanodine-sensitive calcium-release channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|J9P355 RYR3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 656 (236.0 bits), Expect = 2.5e-62, P = 2.5e-62
 Identities = 118/191 (61%), Positives = 137/191 (71%)

Query:     1 MLYIYTVIAFNFFRKFYVQ-EEDDVVDKKCHDMMTCFVFHLYKGVRAXXXXXXXXXXXXX 59
             ++Y+YTV+AFNFFRKFY + E+DD  D KC DMMTC++FH+Y GVRA             
Sbjct:  4442 VVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4501

Query:    60 XXYEVYRXXXXXXXXXXXXXXXXXXXQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
               YE+YR                   QGLIIDAFGELRDQ E V+EDME+ CFICGIG D
Sbjct:  4502 DPYEMYRIVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVREDMETKCFICGIGND 4561

Query:   120 YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
             YFD  PHGF+TH  QEHNLANY+FFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct:  4562 YFDTTPHGFETHTLQEHNLANYLFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 4621

Query:   180 CFRKQYEEDLG 190
             CFRKQYE+ LG
Sbjct:  4622 CFRKQYEDQLG 4632

GO:0016021 "integral to membrane" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005219 "ryanodine-sensitive calcium-release channel activity" evidence=IEA

UNIPROTKB|F1PJL2 RYR3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 656 (236.0 bits), Expect = 2.7e-62, P = 2.7e-62
 Identities = 118/191 (61%), Positives = 137/191 (71%)

Query:     1 MLYIYTVIAFNFFRKFYVQ-EEDDVVDKKCHDMMTCFVFHLYKGVRAXXXXXXXXXXXXX 59
             ++Y+YTV+AFNFFRKFY + E+DD  D KC DMMTC++FH+Y GVRA             
Sbjct:  4623 VVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4682

Query:    60 XXYEVYRXXXXXXXXXXXXXXXXXXXQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
               YE+YR                   QGLIIDAFGELRDQ E V+EDME+ CFICGIG D
Sbjct:  4683 DPYEMYRIVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVREDMETKCFICGIGND 4742

Query:   120 YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
             YFD  PHGF+TH  QEHNLANY+FFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct:  4743 YFDTTPHGFETHTLQEHNLANYLFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 4802

Query:   180 CFRKQYEEDLG 190
             CFRKQYE+ LG
Sbjct:  4803 CFRKQYEDQLG 4813

GO:0016021 "integral to membrane" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005219 "ryanodine-sensitive calcium-release channel activity" evidence=IEA

UNIPROTKB|F1LPJ2 F1LPJ2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 656 (236.0 bits), Expect = 2.7e-62, P = 2.7e-62
 Identities = 118/191 (61%), Positives = 137/191 (71%)

Query:     1 MLYIYTVIAFNFFRKFYVQ-EEDDVVDKKCHDMMTCFVFHLYKGVRAXXXXXXXXXXXXX 59
             ++Y+YTV+AFNFFRKFY + E+DD  D KC DMMTC++FH+Y GVRA             
Sbjct:  4649 VVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMMTCYLFHMYVGVRAGGGIGDEIEDPAG 4708

Query:    60 XXYEVYRXXXXXXXXXXXXXXXXXXXQGLIIDAFGELRDQLESVKEDMESNCFICGIGKD 119
               YE+YR                   QGLIIDAFGELRDQ E V+EDME+ CFICGIG D
Sbjct:  4709 DPYEMYRIVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVREDMETKCFICGIGND 4768

Query:   120 YFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGD 179
             YFD  PHGF+TH  QEHNLANY+FFLM+LINK +TE TGQE+YVW MYQ+RCWDFFP GD
Sbjct:  4769 YFDTTPHGFETHTLQEHNLANYLFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD 4828

Query:   180 CFRKQYEEDLG 190
             CFRKQYE+ LG
Sbjct:  4829 CFRKQYEDQLG 4839

GO:0005219 "ryanodine-sensitive calcium-release channel activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q15413	RYR3_HUMAN	No assigned EC number	0.7748	0.9793	0.0390	yes	N/A
P16960	RYR1_PIG	No assigned EC number	0.7631	0.9742	0.0375	yes	N/A
Q9TS33	RYR3_RABIT	No assigned EC number	0.7748	0.9793	0.0389	yes	N/A
F1LMY4	RYR1_RAT	No assigned EC number	0.7748	0.9793	0.0377	yes	N/A
Q24498	RY44_DROME	No assigned EC number	0.9100	0.9742	0.0368	yes	N/A
A2AGL3	RYR3_MOUSE	No assigned EC number	0.7748	0.9793	0.0390	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	194
pfam00520	194	pfam00520, Ion_trans, Ion transport protein	2e-05

>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 1   MLYIYTVIAFNFFRKFYVQEEDDVVDK-KCHDMMTCFVFHLYKGVRAGGGIGD-EIGDPD 58
           +L+I+ +I    F     +  D   +    +     +   L    R     G  ++    
Sbjct: 104 LLFIFAIIGVQLFGGELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWGDVMYDT 163

Query: 59  GDDYEVYRIIFDITFFFFVIVILLAIIQGLI 89
                V   IF + F     V+LL ++ G+I
Sbjct: 164 LVPGTVLGKIFFVIFIILGGVLLLNLLIGVI 194

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
KOG3533|consensus	2706		100.0
KOG2243|consensus	5019		100.0
PLN03223	1634	Polycystin cation channel protein; Provisional	96.79
KOG3599|consensus	798		92.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	90.8
PF08016	425	PKD_channel: Polycystin cation channel; InterPro:	90.32
PF00520	200	Ion_trans: Ion transport protein calcium channel s	85.24

>KOG3533|consensus

Probab=100.00  E-value=6e-61  Score=472.01  Aligned_cols=185  Identities=35%  Similarity=0.777  Sum_probs=173.2

Q ss_pred             CEEEehhHHHHHhHHhhhcc--------------------------------------------cccccccCccchHHHH
Q psy13301          1 MLYIYTVIAFNFFRKFYVQE--------------------------------------------EDDVVDKKCHDMMTCF   36 (194)
Q Consensus         1 iiYifsii~f~~f~~~~~~~--------------------------------------------~~~~~~~~C~tl~~Cf   36 (194)
                      ++|+|||+||.||+++|.-+                                            +++..+..|+|||+|+
T Consensus      2432 LvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~~tc~~enC~~~~p~~~~~~~~~e~kersCdtLlMCI 2511 (2706)
T KOG3533|consen 2432 LVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPSETCPSENCPGLQPSEKPDDNDDEKKERSCETLLMCI 2511 (2706)
T ss_pred             HHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCccccCCCCCCCCCCCCCCCCcccccchhhhhhHHHHHH
Confidence            47999999999999877531                                            0123456799999999


Q ss_pred             HHhhhhccccCCcccccCCCCCCCC-cchhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHHHHHHHHhhccCceeec
Q psy13301         37 VFHLYKGVRAGGGIGDEIGDPDGDD-YEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICG  115 (194)
Q Consensus        37 ~~~~~~glr~gGGig~~l~~~~~~~-~~~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e~~~~~~d~~~~CFICg  115 (194)
                      ++++++||||||||||+|+.|++++ ...+|++||++||++|+||+||+|||+||||||+||.|||++|+..|+.|||||
T Consensus      2512 vt~lnqGLRnGGGiGDvLR~Psk~E~lF~aRV~YDllFffivIiIVLNLIFGVIIDTFaDLRsEKqkKEeILKttCFICg 2591 (2706)
T KOG3533|consen 2512 VTTLNQGLRNGGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVIIIVLNLIFGVIIDTFADLRSEKQKKEEILKTTCFICG 2591 (2706)
T ss_pred             HHHHhhhcccCCChhhhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhHHHHHHhcceeEee
Confidence            9999999999999999999999765 468899999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCChhhhhhhhcchhhHHHHHHHhccCCCCCCChhhHHHHHHHhcCCCCeeechhHHhhhc
Q psy13301        116 IGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQETYVWNMYQQRCWDFFPVGDCFRKQY  185 (194)
Q Consensus       116 i~r~~fd~~~~gF~~Hi~~eHnmWnYl~fi~yL~~K~~te~tg~E~yV~~~i~~~d~swfP~~~~~~~~~  185 (194)
                      ++|+.||++.-.|++|||.|||||||+|||+-++-|++|||||+||||+++++++.++|||..||+||+.
T Consensus      2592 LeR~kFDNktVsFEeHik~EHNmWhYLyfIVlvkvKd~Te~TGPESYVaqmvk~~nLdWFPRmrAmSLvs 2661 (2706)
T KOG3533|consen 2592 LERSKFDNKTVTFEEHIKTEHNMWHYLYFIVLVKVKDETEFTGPESYVAQMVKDRNLDWFPRMRAMSLVS 2661 (2706)
T ss_pred             cchhhccCceeeHHHhhhhhhhhHHhhheeEEEEecCCccccChHHHHHHHHHhcccchhhhhHhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999874

>KOG2243|consensus

Probab=100.00  E-value=6.1e-52  Score=406.56  Aligned_cols=190  Identities=78%  Similarity=1.447  Sum_probs=186.3

Q ss_pred             CEEEehhHHHHHhHHhhhccc-ccccccCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHH
Q psy13301          1 MLYIYTVIAFNFFRKFYVQEE-DDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIV   79 (194)
Q Consensus         1 iiYifsii~f~~f~~~~~~~~-~~~~~~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~i   79 (194)
                      |+|+|+|+||.||+++|+.++ +++++..|+.+.+|.+++++-|+|+||||||.+.+|.+++|+.+|.+||++||++|++
T Consensus      4829 vvylytvvafnffrkfynksed~d~pdmkcddmltcylfhmyvgvragggigdeiedpagd~yeiyriifditffffviv 4908 (5019)
T KOG2243|consen 4829 VVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMLTCYLFHMYVGVRAGGGIGDEIEDPAGDEYEIYRIIFDITFFFFVIV 4908 (5019)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCCCCccchhhHHHHhhheeeeeecCCcccccccCCCCCcceeeeeeehhhHHHHHHH
Confidence            579999999999999999887 6778889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchHHhHHHHHHHHHhhccCceeecCCccccccCCCChhhhhhhhcchhhHHHHHHHhccCCCCCCChh
Q psy13301         80 ILLAIIQGLIIDAFGELRDQLESVKEDMESNCFICGIGKDYFDKVPHGFDTHVQQEHNLANYMFFLMHLINKPDTEFTGQ  159 (194)
Q Consensus        80 i~lnIi~GIIIDtF~eLR~e~~~~~~d~~~~CFICgi~r~~fd~~~~gF~~Hi~~eHnmWnYl~fi~yL~~K~~te~tg~  159 (194)
                      |+|.||.|.|||+|+||||++++..+||+.+||||||..+.||..++||+.|..+|||+-||+||++||..|++||+||.
T Consensus      4909 illaiiqgliidafgelrdqqeqvkedmetkcficgigndyfdt~phgfethtlqehnlanylfflmylinkdetehtgq 4988 (5019)
T KOG2243|consen 4909 ILLAIIQGLIIDAFGELRDQQEQVKEDMETKCFICGIGNDYFDTTPHGFETHTLQEHNLANYLFFLMYLINKDETEHTGQ 4988 (5019)
T ss_pred             HHHHHHHHHhHHHHHhhHhHHHHHHhhhhcceEEeccccccccCCCCcccccchhhhhHHHHHHHHHHHhcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCeeechhHHhhhchhhhC
Q psy13301        160 ETYVWNMYQQRCWDFFPVGDCFRKQYEEDLG  190 (194)
Q Consensus       160 E~yV~~~i~~~d~swfP~~~~~~~~~~~~~~  190 (194)
                      ||||+++.|++.++|||-+.|+++|+|+|+|
T Consensus      4989 esyvwkmyqercwdffpagdcfrkqyedql~ 5019 (5019)
T KOG2243|consen 4989 ESYVWKMYQERCWDFFPAGDCFRKQYEDQLG 5019 (5019)
T ss_pred             hhHHHHHHHHHHHhhCCchhhHHHHHHhhcC
Confidence            9999999999999999999999999999987

>PLN03223 Polycystin cation channel protein; Provisional

Probab=96.79  E-value=0.00098  Score=69.57  Aligned_cols=86  Identities=23%  Similarity=0.383  Sum_probs=57.0

Q ss_pred             EEEehhHHHHHhHHhhhcccccccccCccchHHHHHHhhhhccccCCccc---ccCCCCCCCCcchhhHhhHHHHHHHHH
Q psy13301          2 LYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIG---DEIGDPDGDDYEVYRIIFDITFFFFVI   78 (194)
Q Consensus         2 iYifsii~f~~f~~~~~~~~~~~~~~~C~tl~~Cf~~~~~~glr~gGGig---~~l~~~~~~~~~~~R~~fDl~ffiiv~   78 (194)
                      ++.||++|+..|...         ...-.|+..++.+.+...+   |.+.   +.+.+....+ .+.--+|=.+|.++++
T Consensus      1341 F~AFAqLG~LLFGt~---------ve~FSTf~sSL~TLFqMLL---GDfdYF~eDLk~l~e~n-rVLGPIYFfSFILLV~ 1407 (1634)
T PLN03223       1341 FVGYAFIGHVIFGNA---------SVHFSDMTDSINSLFENLL---GDITYFNEDLKNLTGLQ-FVVGMIYFYSYNIFVF 1407 (1634)
T ss_pred             HHHHHHHHHHHhccC---------chhhcCHHHHHHHHHHHHH---cCchHHHHHHHhhhccc-chHHHHHHHHHHHHHH
Confidence            467888888887542         2356788888888886554   2221   1121111111 1233345577889999


Q ss_pred             HHHHHHHHHHhhcchHHhHHHH
Q psy13301         79 VILLAIIQGLIIDAFGELRDQL  100 (194)
Q Consensus        79 ii~lnIi~GIIIDtF~eLR~e~  100 (194)
                      +|+|||+.|||.|+|++.|++.
T Consensus      1408 FILLNMFIAII~DSFsEVK~d~ 1429 (1634)
T PLN03223       1408 MILFNFLLAIICDAFGEVKANA 1429 (1634)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999998764

>KOG3599|consensus

Probab=92.89  E-value=0.41  Score=48.38  Aligned_cols=66  Identities=24%  Similarity=0.401  Sum_probs=47.0

Q ss_pred             ccchHHHHHHhhhhccccCCcccccCCCCCCC-Cc-chhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHHHHH
Q psy13301         29 CHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGD-DY-EVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLES  102 (194)
Q Consensus        29 C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~-~~-~~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e~~~  102 (194)
                      =.|+.+|+.+.+...+      |+ + .|..- .. .+.=.++=.++-+++..|++||+-+||.|+|+|.|++..+
T Consensus       621 f~~f~~s~~t~~~~~~------G~-~-~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~~~~  688 (798)
T KOG3599|consen  621 FRTFVASIVTLLRYIL------GD-F-CPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKADLAK  688 (798)
T ss_pred             hHHHHHHHHHHHHHHh------cc-C-CccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHhh
Confidence            3678899988887765      22 1 12211 11 1233456677888899999999999999999999998866

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=90.80  E-value=1.1  Score=43.99  Aligned_cols=68  Identities=10%  Similarity=0.244  Sum_probs=42.2

Q ss_pred             cchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHHHHH
Q psy13301         30 HDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLES  102 (194)
Q Consensus        30 ~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e~~~  102 (194)
                      .++...+.+.+...+    |.++.. .+......+.-.++=.+|-++++||++||..+++-|||.+..++.++
T Consensus       557 ~~~~~s~~~lf~~~~----G~~~~~-~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~  624 (743)
T TIGR00870       557 STLFETSQELFWAII----GLGDLL-ANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADE  624 (743)
T ss_pred             cCHHHHHHHHHHHHc----CCcccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH
Confidence            345556666555544    234432 12211112233344566888999999999999999999988877443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys

Probab=90.32  E-value=0.76  Score=42.25  Aligned_cols=76  Identities=17%  Similarity=0.318  Sum_probs=45.6

Q ss_pred             ehhHHHHHhHHhhhcccccccccCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHHHHH
Q psy13301          5 YTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVILLAI   84 (194)
Q Consensus         5 fsii~f~~f~~~~~~~~~~~~~~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~lnI   84 (194)
                      ||..++..|..         ....-.|+...+.+.+..-+- +-+.. .+..+   +...+.+++ .+|.+++.++++|+
T Consensus       349 fa~~g~l~fG~---------~~~~f~s~~~s~~tl~~~l~g-~~~~~-~~~~~---~~~lg~l~~-~~~~~~~~~illNl  413 (425)
T PF08016_consen  349 FAQAGYLLFGS---------YSEDFSSFSSSLVTLFRMLLG-DFDYD-ELYQA---NPVLGPLFF-FSFMFLVFFILLNL  413 (425)
T ss_pred             HHHHHHHhhcC---------CccccCCHHHHHHHHHHHhcC-CCchh-hhhcc---cccHHHHHH-HHHHHHHHHHHHHH
Confidence            55566655532         123456777777666544331 11111 11111   122455555 88889999999999


Q ss_pred             HHHHhhcchHH
Q psy13301         85 IQGLIIDAFGE   95 (194)
Q Consensus        85 i~GIIIDtF~e   95 (194)
                      +.+||.|+|.+
T Consensus       414 ~iaIi~~~y~~  424 (425)
T PF08016_consen  414 FIAIINDSYEE  424 (425)
T ss_pred             HHHHHHHHhhc
Confidence            99999999985

Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=85.24  E-value=0.4  Score=37.23  Aligned_cols=84  Identities=18%  Similarity=0.274  Sum_probs=48.9

Q ss_pred             EEehhHHHHHhHHhhhcc--------cccccccCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHH
Q psy13301          3 YIYTVIAFNFFRKFYVQE--------EDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFF   74 (194)
Q Consensus         3 Yifsii~f~~f~~~~~~~--------~~~~~~~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ff   74 (194)
                      +.||++++..|......+        ++....+.+++...++.+.+.-..  +-|-++.+.+.. ......-.+|-.+|.
T Consensus       109 ~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~~~~~~~~  185 (200)
T PF00520_consen  109 LFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMT--GEGWGDVMPSCM-SARSWLAVIFFISFI  185 (200)
T ss_dssp             HHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHT--TTTCCCCHHHHH-HTTSTTHHHHHHHHH
T ss_pred             ccccchhheecccccccccccccccccccccccccccccccccccccccc--cCCccccccccc-cccchhHhHHhhhhh
Confidence            457778887776543221        012233445667777766663322  223344332100 011356788889999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy13301         75 FFVIVILLAIIQGLI   89 (194)
Q Consensus        75 iiv~ii~lnIi~GII   89 (194)
                      +++.++++|++.|+|
T Consensus       186 ~i~~~~l~nlliavi  200 (200)
T PF00520_consen  186 IIVSILLLNLLIAVI  200 (200)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcC
Confidence            999999999999987

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
4f4l_A	112	ION transport protein; alpha helical membrane prot	98.33
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	97.09
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	95.48
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	88.94

>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}

Probab=98.33  E-value=5.7e-08  Score=73.59  Aligned_cols=94  Identities=20%  Similarity=0.243  Sum_probs=49.3

Q ss_pred             EEEehhHHHHHhHHhhhcccccccccCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHH
Q psy13301          2 LYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVIL   81 (194)
Q Consensus         2 iYifsii~f~~f~~~~~~~~~~~~~~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~   81 (194)
                      +|+||++|...|.+..+        ..-+++...+++.+.-.  ++-|-.+.+..|..... .+-.+|=++|.++...++
T Consensus        17 ~~ifAi~G~~lFg~~~~--------~~F~~~~~s~ltLF~i~--T~e~W~~~~~~~~~~~~-~~a~iyFi~fi~i~~fi~   85 (112)
T 4f4l_A           17 FYIAAVMATNLYGATFP--------EWFGDLSKSLYTLFQVM--TLESWSMGIVRPVMNVH-PNAWVFFIPFIMLTTFTV   85 (112)
T ss_dssp             HHHHHHHHHHHHTTTCH--------HHHSSHHHHHHHHHHHH--TTTTCCCCCHHHHTTTS-TTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCcc--------ccccCHHHHHHHHHHHH--HccccHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHH
Confidence            58999999999875432        22456666666665322  23344444433322111 233466788889999999


Q ss_pred             HHHHHHHhhcchHHhHHHHHHHHHh
Q psy13301         82 LAIIQGLIIDAFGELRDQLESVKED  106 (194)
Q Consensus        82 lnIi~GIIIDtF~eLR~e~~~~~~d  106 (194)
                      +|++.|+|+|+|++.|+++++.+++
T Consensus        86 lNLfiaVi~~~f~~~~~~~~~~~~~  110 (112)
T 4f4l_A           86 LNLFIGIIVDAMAITKEQEEEAKTG  110 (112)
T ss_dssp             HHHHTTTC-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999888776654

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=97.09  E-value=9.4e-05  Score=62.53  Aligned_cols=94  Identities=17%  Similarity=0.234  Sum_probs=47.1

Q ss_pred             EEEehhHHHHHhHHhhhcccccccccCccchHHHHHHhhhhccccCCccc-ccCCCCCCCCcchhhHhhHHHHHHHHHHH
Q psy13301          2 LYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIG-DEIGDPDGDDYEVYRIIFDITFFFFVIVI   80 (194)
Q Consensus         2 iYifsii~f~~f~~~~~~~~~~~~~~~C~tl~~Cf~~~~~~glr~gGGig-~~l~~~~~~~~~~~R~~fDl~ffiiv~ii   80 (194)
                      +|+||++|+..|.+...+    ..++.-+++|.++.+.-      +-|.| |.+.+...... ++. .|=.+|.++..++
T Consensus       159 ~~~fa~~g~~~f~~~~~~----~F~s~~~a~~~~~~~~T------~~g~~~di~~p~~~~~~-~~~-~~f~~~~~i~~~~  226 (285)
T 3rvy_A          159 FYIFAIMATQLFGERFPE----WFGTLGESFYTLFQVMT------LESWSMGIVRPLMEVYP-YAW-VFFIPFIFVVTFV  226 (285)
T ss_dssp             HHHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHT------TTTCCCCCHHHHHTTCT-TTH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccccc----ccCCHHHHHHHHHHHHH------hCCCcHHHHHHHHHcCC-hHH-hhHHHHHHHHHHH
Confidence            467888998888643321    12233455555554433      23455 55422111111 222 2335678888999


Q ss_pred             HHHHHHHHhhcchHHhHHHHHHHHHhh
Q psy13301         81 LLAIIQGLIIDAFGELRDQLESVKEDM  107 (194)
Q Consensus        81 ~lnIi~GIIIDtF~eLR~e~~~~~~d~  107 (194)
                      ++|++.|+|+|+|++.++++++.+++.
T Consensus       227 ~lnl~~aii~~~f~~~~~~~~~~~~~~  253 (285)
T 3rvy_A          227 MINLVVAICVDAMAILNQKEEQHIIDE  253 (285)
T ss_dssp             HHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999887766555443

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=95.48  E-value=0.0021  Score=52.43  Aligned_cols=84  Identities=12%  Similarity=0.189  Sum_probs=51.7

Q ss_pred             EEEehhHHHHHhHHhhhcccccccccCccchHHHHHHhhhhccccCCcccccCCCCCCCCcchhhHhhHHHHHHHHHHHH
Q psy13301          2 LYIYTVIAFNFFRKFYVQEEDDVVDKKCHDMMTCFVFHLYKGVRAGGGIGDEIGDPDGDDYEVYRIIFDITFFFFVIVIL   81 (194)
Q Consensus         2 iYifsii~f~~f~~~~~~~~~~~~~~~C~tl~~Cf~~~~~~glr~gGGig~~l~~~~~~~~~~~R~~fDl~ffiiv~ii~   81 (194)
                      +|+||++|...|.+..+        ..=+|....+.+.+.-  -++.|-++.+.+.. +...++. +|=.+|.++...++
T Consensus       144 ~~ifa~~g~~lf~~~~~--------~~F~~~~~a~~~lf~~--~t~~~w~~i~~~~~-~~~~~~~-~~f~~~~~i~~~i~  211 (229)
T 4dxw_A          144 LYIYATMGAILFGNDDP--------SRWGDLGISLITLFQV--LTLSSWETVMLPMQ-EIYWWSW-VYFFSFIIICSITI  211 (229)
T ss_dssp             HHHHHHHHHHHTTTTSC--------TTTSSHHHHHHHHHHH--HTTSSTHHHHHHHH-TTCTTHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCc--------ccccCHHHHHHHHHHH--HccCCHHHHHHHHH-HhCCcHH-HHHHHHHHHHHHHH
Confidence            46889999988875321        1235555655555432  23344555443211 1111333 34467888889999


Q ss_pred             HHHHHHHhhcchHHhH
Q psy13301         82 LAIIQGLIIDAFGELR   97 (194)
Q Consensus        82 lnIi~GIIIDtF~eLR   97 (194)
                      +|++.|+|+|+|++-+
T Consensus       212 lNlfiavi~~~f~~~~  227 (229)
T 4dxw_A          212 LNLVIAILVDVVIQKK  227 (229)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999643

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=88.94  E-value=0.24  Score=45.75  Aligned_cols=55  Identities=9%  Similarity=-0.019  Sum_probs=28.9

Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHHHHhhcchHHhHHHHH-HHHHhhccCceeecCCccc
Q psy13301         64 VYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQLE-SVKEDMESNCFICGIGKDY  120 (194)
Q Consensus        64 ~~R~~fDl~ffiiv~ii~lnIi~GIIIDtF~eLR~e~~-~~~~d~~~~CFICgi~r~~  120 (194)
                      .+|++.  ++.+++.++++|++.|+|++.|+++..+++ +.++.+++..-+||.....
T Consensus       401 ~gr~f~--~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~~~~~~l~~h~iicg~~~~~  456 (514)
T 2r9r_B          401 GGKIVG--SLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIPSS  456 (514)
T ss_dssp             HHHHHH--HHHHHHHHHHHHTTHHHHHHHHHHHHHHHC--------------------
T ss_pred             chHhhe--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEeCCCccc
Confidence            567653  677888899999999999999999866543 3345566889999976643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00