Psyllid ID: psy13321

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MNPSKGNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDIYSSRASLVSLALPCKRWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRDGMTPLEETILFV
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHccccccccEEEEcccccccccccEEEccccccccccccccccccccHHHHHcccccEEEEEcccEEEEEEcccccccccEEEEEEEEcccccccEEEEEEEcccccccHHccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHccccccccEEEEEEEccccccccEEEEccccccccccccEEEEHHHHHHHcccccccEEEEEcccEEEEEEEccccccccEEEEEEEEEEcccccEEEEEEEEcccccHHHHcccccEEEEEEEc
Coil and Loop (DISEMBL)
mnpskgnpgisTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDIYSSRASLVSLALPckrwvagnlgrvdftsefeydlfirpdtcnprhrlWFNFVIDNTRLDQRVILNIVNmgktknlfrdgmtpleetilfv
Flexible Loop (DISEMBL)
mnpskgnpgiSTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDIYSSRASLVSLALPCKRWVAGNLGRVDFTSEFEYDLFIrpdtcnprHRLWFNFVIDNTRLDQRVILNIvnmgktknlfrdgmtpleetilfv
Low Complexity Region (SEG)
MNPSKGNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDIYSSRASLVSLALPCKRWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRDGMTPLEETILFV
Disordered region (IsUnstruct)
***********TALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDIYSSRASLVSLALPCKRWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRDGMTPL*******
Disordered Region (DISOPRED)
****KGNPGISTAL**********NLELDFIIDLHAHSSLKG****************SLVSLALPCKRWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRDGMTPLEETILFV
Disordered Region (DISEMBL)
********GISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDIYSSRASLVSLALPCKRWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRDGMTPLEETILFV
Disordered Region (DISPRO)
****KGNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDIYSSRASLVSLALPCKRWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRDGMTPLEETILFV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNPSKGNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDIYSSRASLVSLALPCKRWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRDGMTPLEETILFV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q5VU57	503	Cytosolic carboxypeptidas	yes	N/A	0.458	0.131	0.712	4e-24
Q09LZ8	540	Cytosolic carboxypeptidas	no	N/A	0.451	0.120	0.681	1e-22
Q09296	459	Cytosolic carboxypeptidas	yes	N/A	0.576	0.180	0.471	1e-13
Q4R632	840	Cytosolic carboxypeptidas	N/A	N/A	0.479	0.082	0.405	2e-07
Q5U5Z8	902	Cytosolic carboxypeptidas	no	N/A	0.479	0.076	0.391	4e-07
Q8CDK2	862	Cytosolic carboxypeptidas	no	N/A	0.479	0.080	0.391	5e-07
Q8NEM8	1001	Cytosolic carboxypeptidas	no	N/A	0.479	0.068	0.376	5e-07
Q8CDP0	1006	Cytosolic carboxypeptidas	no	N/A	0.479	0.068	0.362	9e-07
Q9VY99	1201	Cytosolic carboxypeptidas	no	N/A	0.479	0.057	0.347	2e-06
E1B9D8	1003	Cytosolic carboxypeptidas	no	N/A	0.479	0.068	0.362	2e-06

>sp|Q5VU57|CBPC6_HUMAN Cytosolic carboxypeptidase 6 OS=Homo sapiens GN=AGBL4 PE=2 SV=3

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 55/66 (83%)

Query: 72  AGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFR 131
           +GNLGRVD  SEFEYDLFIRPDTCNPR R+WFNF ++N +  QRVI NIVN  KTK+L+R
Sbjct: 52  SGNLGRVDQVSEFEYDLFIRPDTCNPRFRVWFNFTVENVKESQRVIFNIVNFSKTKSLYR 111

Query: 132 DGMTPL 137
           DGM P+
Sbjct: 112 DGMAPM 117

Metallocarboxypeptidase that mediates deglutamylation of target proteins. Catalyzes the deglutamylation of polyglutamate side chains generated by post-translational polyglutamylation in proteins such as tubulins. Also removes gene-encoded polyglutamates from the carboxy-terminus of target proteins such as MYLK. Acts as a long-chain deglutamylase and specifically shortens long polyglutamate chains, while it is not able to remove the branching point glutamate, a process catalyzed by AGBL5/CCP5.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 1EC: 7EC: .EC: -

>sp|Q09LZ8|CBPC6_MOUSE Cytosolic carboxypeptidase 6 OS=Mus musculus GN=Agbl4 PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/66 (68%), Positives = 55/66 (83%)

Query: 72  AGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFR 131
           +GNLGRV+  S+FEYDLFIRPDTCNPR R+WFNF ++N +  QRVI NIVN  KTK+L+R
Sbjct: 52  SGNLGRVEQVSDFEYDLFIRPDTCNPRFRVWFNFTVENVKELQRVIFNIVNFSKTKSLYR 111

Query: 132 DGMTPL 137
           DGM P+
Sbjct: 112 DGMAPM 117

Metallocarboxypeptidase that mediates deglutamylation of target proteins. Catalyzes the deglutamylation of polyglutamate side chains generated by post-translational polyglutamylation in proteins such as tubulins. Also removes gene-encoded polyglutamates from the carboxy-terminus of target proteins such as MYLK. Acts as a long-chain deglutamylase and specifically shortens long polyglutamate chains, while it is not able to remove the branching point glutamate, a process catalyzed by AGBL5/CCP5.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|Q09296|CBPC6_CAEEL Cytosolic carboxypeptidase 6 OS=Caenorhabditis elegans GN=ccpp-6 PE=2 SV=2

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 51/87 (58%), Gaps = 4/87 (4%)

Query: 49  SYDDIYSSRASLVSLALPCKRWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVID 108
           SY D    + +LV  A     + +GNLGRVD  S  EYDLFIRPDT N ++R+WF F   
Sbjct: 8   SYPDTIPGQGNLVFEA----SFESGNLGRVDKVSCSEYDLFIRPDTLNNKYRVWFYFECK 63

Query: 109 NTRLDQRVILNIVNMGKTKNLFRDGMT 135
           N   +QR I NIVN  K + LF  G+ 
Sbjct: 64  NASENQRAIFNIVNFSKQRTLFEMGIA 90

Metallocarboxypeptidase that mediates tubulin deglutamylation in sensory cilia. Catalyzes the removing polyglutamate side chains that are present on the gamma-carboxyl group of glutamate residues of tubulin in sensory cilia.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|Q4R632|CBPC2_MACFA Cytosolic carboxypeptidase 2 OS=Macaca fascicularis GN=AGBL2 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 37/69 (53%)

Query: 69  RWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKN 128
           R+  GNL +      +EY+L +R D    RH  WF F + NTR D      IVN+ K K+
Sbjct: 233 RFECGNLQKAVRVDTYEYELTLRTDLYTNRHTQWFYFRVQNTRKDATYRFTIVNLLKPKS 292

Query: 129 LFRDGMTPL 137
           L+  GM PL
Sbjct: 293 LYTVGMKPL 301

Metallocarboxypeptidase that may play a role in the processing of tubulin.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|Q5U5Z8|CBPC2_HUMAN Cytosolic carboxypeptidase 2 OS=Homo sapiens GN=AGBL2 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%)

Query: 69  RWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKN 128
           R+ +GNL +      +EY+L +R D    +H  WF F + NTR D      IVN+ K K+
Sbjct: 271 RFESGNLQKAVRVDTYEYELTLRTDLYTNKHTQWFYFRVQNTRKDATYRFTIVNLLKPKS 330

Query: 129 LFRDGMTPL 137
           L+  GM PL
Sbjct: 331 LYTVGMKPL 339

Metallocarboxypeptidase that may play a role in the processing of tubulin.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|Q8CDK2|CBPC2_MOUSE Cytosolic carboxypeptidase 2 OS=Mus musculus GN=Agbl2 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 38/69 (55%)

Query: 69  RWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKN 128
           R+ +GNL +      +EY+L +R D    +H  WF F + NTR D      IVN+ K K+
Sbjct: 234 RFESGNLQKAVRVGIYEYELTLRTDLYTDKHTQWFYFRVQNTRKDATYRFTIVNLLKPKS 293

Query: 129 LFRDGMTPL 137
           L+  GM PL
Sbjct: 294 LYAVGMKPL 302

Metallocarboxypeptidase that may play a role in the processing of tubulin.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|Q8NEM8|CBPC3_HUMAN Cytosolic carboxypeptidase 3 OS=Homo sapiens GN=AGBL3 PE=2 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%)

Query: 69  RWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKN 128
           R+ +GNL +V   +E+EY L +RPD    +H  W+ F + N R        IVN  K  +
Sbjct: 174 RFESGNLQKVVKVAEYEYQLTVRPDLFTNKHTQWYYFQVTNMRAGIVYRFTIVNFTKPAS 233

Query: 129 LFRDGMTPL 137
           L+  GM PL
Sbjct: 234 LYSRGMRPL 242

Metallocarboxypeptidase that may play a role in the processing of tubulin.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|Q8CDP0|CBPC3_MOUSE Cytosolic carboxypeptidase 3 OS=Mus musculus GN=Agbl3 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%)

Query: 69  RWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKN 128
           R+ +GNL +V   ++ EY+L +RPD    +H  W+ F + NT+ +      IVN  K  +
Sbjct: 179 RFESGNLQKVVKVADHEYELTVRPDLFTNKHTQWYYFQVTNTQAEIVYRFTIVNFTKPAS 238

Query: 129 LFRDGMTPL 137
           L+  GM PL
Sbjct: 239 LYNRGMKPL 247

Metallocarboxypeptidase that may play a role in the processing of tubulin.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|Q9VY99|NNAD_DROME Cytosolic carboxypeptidase NnaD OS=Drosophila melanogaster GN=NnaD PE=2 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%)

Query: 69  RWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKN 128
           R+ +GNL +    +   Y+L++RPD    R + WF F +  TR       +IVN+ K+ +
Sbjct: 738 RFESGNLAKAVQITPTYYELYLRPDLYTSRSKQWFYFRVRRTRRKMLYRFSIVNLVKSDS 797

Query: 129 LFRDGMTPL 137
           L+ DGM P+
Sbjct: 798 LYNDGMQPV 806

Metallocarboxypeptidase.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|E1B9D8|CBPC3_BOVIN Cytosolic carboxypeptidase 3 OS=Bos taurus GN=AGBL3 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%)

Query: 69  RWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKN 128
           R+ +GNL +V    E+EY L +RPD    +H  W+ F + NT+        I N  K  +
Sbjct: 174 RFESGNLQKVVKVGEYEYQLTVRPDLFTNKHTQWYYFQVTNTQAGIVYRFTITNFTKPAS 233

Query: 129 LFRDGMTPL 137
           L+  GM PL
Sbjct: 234 LYNRGMRPL 242

Metallocarboxypeptidase that may play a role in the processing of tubulin.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
345493989	623	PREDICTED: cytosolic carboxypeptidase 6-	0.451	0.104	0.830	4e-26
395530254	695	PREDICTED: cytosolic carboxypeptidase 6	0.458	0.094	0.742	7e-25
347966655	642	AGAP001814-PA [Anopheles gambiae str. PE	0.451	0.101	0.753	1e-24
170034769	633	conserved hypothetical protein [Culex qu	0.451	0.102	0.738	2e-24
312371650	476	hypothetical protein AND_21828 [Anophele	0.430	0.130	0.738	4e-24
380027130	589	PREDICTED: cytosolic carboxypeptidase 6-	0.451	0.110	0.784	4e-24
66500605	591	PREDICTED: cytosolic carboxypeptidase 6-	0.451	0.109	0.769	6e-24
157134967	630	hypothetical protein AaeL_AAEL013187 [Ae	0.451	0.103	0.738	1e-23
332029761	600	Cytosolic carboxypeptidase 6 [Acromyrmex	0.451	0.108	0.769	2e-23
350425136	596	PREDICTED: cytosolic carboxypeptidase 6-	0.451	0.109	0.753	2e-23

>gi|345493989|ref|XP_001603232.2| PREDICTED: cytosolic carboxypeptidase 6-like [Nasonia vitripennis]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/65 (83%), Positives = 58/65 (89%)

Query: 73  GNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRD 132
           GNLGRVD  SEFEYDLFIRPDTC+PR RLWFNF +DN RLDQRVI NIVN+ K+KNLFRD
Sbjct: 64  GNLGRVDLVSEFEYDLFIRPDTCSPRLRLWFNFTVDNVRLDQRVIFNIVNISKSKNLFRD 123

Query: 133 GMTPL 137
           GMTPL
Sbjct: 124 GMTPL 128

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395530254|ref|XP_003767212.1| PREDICTED: cytosolic carboxypeptidase 6 [Sarcophilus harrisii]

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/66 (74%), Positives = 56/66 (84%)

Query: 72  AGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFR 131
           AGNLGRVD  SEFEYDLFIRPDTCNPR R+WFNF ++N +  QRVI NIVN  KTK+L+R
Sbjct: 98  AGNLGRVDHVSEFEYDLFIRPDTCNPRFRVWFNFTVENVKESQRVIFNIVNFSKTKSLYR 157

Query: 132 DGMTPL 137
           DGMTP+
Sbjct: 158 DGMTPM 163

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|347966655|ref|XP_001689321.2| AGAP001814-PA [Anopheles gambiae str. PEST] gi|333469958|gb|EDO63226.2| AGAP001814-PA [Anopheles gambiae str. PEST]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 56/65 (86%)

Query: 73  GNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRD 132
           GNLGRVD   EFEYDLF+RPDTCNPR+R WFNF +DN + DQRVI NIVNM K++NLF+D
Sbjct: 62  GNLGRVDLVGEFEYDLFLRPDTCNPRYRFWFNFTVDNVKQDQRVIFNIVNMNKSRNLFKD 121

Query: 133 GMTPL 137
           GMTPL
Sbjct: 122 GMTPL 126

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170034769|ref|XP_001845245.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167876375|gb|EDS39758.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 56/65 (86%)

Query: 73  GNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRD 132
           GNLGR+D   EFEYDLF+RPDTCNPR+R WFNF +DN + DQRVI NIVNM K++NLF+D
Sbjct: 62  GNLGRIDLVGEFEYDLFLRPDTCNPRYRFWFNFTVDNVKQDQRVIFNIVNMNKSRNLFKD 121

Query: 133 GMTPL 137
           GMTPL
Sbjct: 122 GMTPL 126

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312371650|gb|EFR19782.1| hypothetical protein AND_21828 [Anopheles darlingi]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 56/65 (86%)

Query: 73  GNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRD 132
           GNLGRVD   EFEYDLF+RPDTCNPR+R WFNF +DN + DQRVI NIVN+ K++NLF+D
Sbjct: 89  GNLGRVDLVGEFEYDLFLRPDTCNPRYRFWFNFTVDNVKQDQRVIFNIVNINKSRNLFKD 148

Query: 133 GMTPL 137
           GMTPL
Sbjct: 149 GMTPL 153

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027130|ref|XP_003697285.1| PREDICTED: cytosolic carboxypeptidase 6-like [Apis florea]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 56/65 (86%)

Query: 73  GNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRD 132
           GNLGRVD  SEFEYDLFIRPDTCNPR RLWFNF +DN + DQRVI NIVN+ K+ NLFR+
Sbjct: 55  GNLGRVDLISEFEYDLFIRPDTCNPRLRLWFNFTVDNVKADQRVIFNIVNISKSANLFRN 114

Query: 133 GMTPL 137
           GMTPL
Sbjct: 115 GMTPL 119

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66500605|ref|XP_624478.1| PREDICTED: cytosolic carboxypeptidase 6-like [Apis mellifera]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 56/65 (86%)

Query: 73  GNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRD 132
           GNLGRVD  SEFEYDLFIRPDTCNPR R+WFNF +DN + DQRVI NIVN+ K+ NLFR+
Sbjct: 57  GNLGRVDLISEFEYDLFIRPDTCNPRLRMWFNFTVDNVKADQRVIFNIVNISKSANLFRN 116

Query: 133 GMTPL 137
           GMTPL
Sbjct: 117 GMTPL 121

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157134967|ref|XP_001663380.1| hypothetical protein AaeL_AAEL013187 [Aedes aegypti] gi|108870357|gb|EAT34582.1| AAEL013187-PA, partial [Aedes aegypti]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 55/65 (84%)

Query: 73  GNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRD 132
           GNLGRVD   EFEYDLF+RPDTCNPR+R WFNF +DN + DQRVI NIVN+ K +NLF+D
Sbjct: 62  GNLGRVDLVGEFEYDLFLRPDTCNPRYRFWFNFTVDNVKQDQRVIFNIVNINKNRNLFKD 121

Query: 133 GMTPL 137
           GMTPL
Sbjct: 122 GMTPL 126

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029761|gb|EGI69630.1| Cytosolic carboxypeptidase 6 [Acromyrmex echinatior]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 54/65 (83%)

Query: 73  GNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRD 132
           GNLGRVD  SEFEYDLFIRPDTC PR RLWFNF +DN + DQRVI NIVN+ K+ NLFR 
Sbjct: 62  GNLGRVDLISEFEYDLFIRPDTCGPRLRLWFNFTVDNVKADQRVIFNIVNISKSANLFRQ 121

Query: 133 GMTPL 137
           GMTPL
Sbjct: 122 GMTPL 126

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425136|ref|XP_003494023.1| PREDICTED: cytosolic carboxypeptidase 6-like [Bombus impatiens]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 55/65 (84%)

Query: 73  GNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRD 132
           GNLGRVD  SEFEYDLFIRPD CNPR RLWFNF +DN + DQRV+ NIVN+ K+ NLFR+
Sbjct: 61  GNLGRVDLISEFEYDLFIRPDICNPRLRLWFNFTVDNVKADQRVVFNIVNISKSANLFRN 120

Query: 133 GMTPL 137
           GMTPL
Sbjct: 121 GMTPL 125

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
UNIPROTKB|B1AMW3	320	AGBL4 "Cytosolic carboxypeptid	0.458	0.206	0.712	2.9e-23
ZFIN|ZDB-GENE-081104-437	486	agbl4 "ATP/GTP binding protein	0.458	0.135	0.712	5e-23
UNIPROTKB|Q5VU57	503	AGBL4 "Cytosolic carboxypeptid	0.458	0.131	0.712	1.2e-22
UNIPROTKB|F1NNJ2	445	AGBL4 "Uncharacterized protein	0.458	0.148	0.681	1.6e-22
MGI|MGI:1918244	540	Agbl4 "ATP/GTP binding protein	0.458	0.122	0.681	2.5e-21
FB|FBgn0051019	659	CG31019 [Drosophila melanogast	0.451	0.098	0.630	2.3e-20
WB|WBGene00017136	459	ccpp-6 [Caenorhabditis elegans	0.583	0.183	0.483	1.9e-13
UNIPROTKB|Q09296	459	ccpp-6 "Cytosolic carboxypepti	0.583	0.183	0.483	1.9e-13
RGD|1561995	871	Agbl3 "ATP/GTP binding protein	0.479	0.079	0.376	8.9e-09
UNIPROTKB|F1NDJ1	488	AGBL3 "Uncharacterized protein	0.479	0.141	0.420	1.6e-08

UNIPROTKB|B1AMW3 AGBL4 "Cytosolic carboxypeptidase 6" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 47/66 (71%), Positives = 55/66 (83%)

Query:    72 AGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFR 131
             +GNLGRVD  SEFEYDLFIRPDTCNPR R+WFNF ++N +  QRVI NIVN  KTK+L+R
Sbjct:    52 SGNLGRVDQVSEFEYDLFIRPDTCNPRFRVWFNFTVENVKESQRVIFNIVNFSKTKSLYR 111

Query:   132 DGMTPL 137
             DGM P+
Sbjct:   112 DGMAPM 117

GO:0004181 "metallocarboxypeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-081104-437 agbl4 "ATP/GTP binding protein-like 4" [Danio rerio (taxid:7955)]

 Score = 271 (100.5 bits), Expect = 5.0e-23, P = 5.0e-23
 Identities = 47/66 (71%), Positives = 57/66 (86%)

Query:    72 AGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFR 131
             +GNLGRVD+ SEFE+DLFIRPDTCNPR R+WFNF ++N R  QRVI NIVN  KTK+L+R
Sbjct:    53 SGNLGRVDYISEFEFDLFIRPDTCNPRFRVWFNFTVENVRETQRVIFNIVNFSKTKSLYR 112

Query:   132 DGMTPL 137
             DGM+P+
Sbjct:   113 DGMSPV 118

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004181 "metallocarboxypeptidase activity" evidence=IEA

UNIPROTKB|Q5VU57 AGBL4 "Cytosolic carboxypeptidase 6" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 47/66 (71%), Positives = 55/66 (83%)

Query:    72 AGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFR 131
             +GNLGRVD  SEFEYDLFIRPDTCNPR R+WFNF ++N +  QRVI NIVN  KTK+L+R
Sbjct:    52 SGNLGRVDQVSEFEYDLFIRPDTCNPRFRVWFNFTVENVKESQRVIFNIVNFSKTKSLYR 111

Query:   132 DGMTPL 137
             DGM P+
Sbjct:   112 DGMAPM 117

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0015631 "tubulin binding" evidence=ISS

GO:0004181 "metallocarboxypeptidase activity" evidence=ISS

GO:0035610 "protein side chain deglutamylation" evidence=ISS

GO:0035609 "C-terminal protein deglutamylation" evidence=ISS

UNIPROTKB|F1NNJ2 AGBL4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 265 (98.3 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 45/66 (68%), Positives = 55/66 (83%)

Query:    72 AGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFR 131
             +GNLGRVD  +EFEYDLFIRPDTCNPR R+WFNF ++N +  QRVI N+VN  KTK+L+R
Sbjct:    42 SGNLGRVDHITEFEYDLFIRPDTCNPRFRVWFNFTVENVKESQRVIFNVVNFSKTKSLYR 101

Query:   132 DGMTPL 137
             DGM P+
Sbjct:   102 DGMAPM 107

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004181 "metallocarboxypeptidase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015631 "tubulin binding" evidence=IEA

GO:0035609 "C-terminal protein deglutamylation" evidence=IEA

GO:0035610 "protein side chain deglutamylation" evidence=IEA

MGI|MGI:1918244 Agbl4 "ATP/GTP binding protein-like 4" [Mus musculus (taxid:10090)]

 Score = 257 (95.5 bits), Expect = 2.5e-21, P = 2.5e-21
 Identities = 45/66 (68%), Positives = 55/66 (83%)

Query:    72 AGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFR 131
             +GNLGRV+  S+FEYDLFIRPDTCNPR R+WFNF ++N +  QRVI NIVN  KTK+L+R
Sbjct:    52 SGNLGRVEQVSDFEYDLFIRPDTCNPRFRVWFNFTVENVKELQRVIFNIVNFSKTKSLYR 111

Query:   132 DGMTPL 137
             DGM P+
Sbjct:   112 DGMAPM 117

GO:0004180 "carboxypeptidase activity" evidence=IEA

GO:0004181 "metallocarboxypeptidase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015631 "tubulin binding" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0035609 "C-terminal protein deglutamylation" evidence=IDA

GO:0035610 "protein side chain deglutamylation" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

FB|FBgn0051019 CG31019 [Drosophila melanogaster (taxid:7227)]

 Score = 250 (93.1 bits), Expect = 2.3e-20, P = 2.3e-20
 Identities = 41/65 (63%), Positives = 52/65 (80%)

Query:    73 GNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRD 132
             GNLG+ +   EFEYDLF+RPDTCNPR R WFNF +DN + DQRV+ +IVN+ K++NLF  
Sbjct:    62 GNLGKAELVGEFEYDLFLRPDTCNPRFRFWFNFTVDNVKQDQRVLFHIVNISKSRNLFSS 121

Query:   133 GMTPL 137
             G+TPL
Sbjct:   122 GLTPL 126

GO:0004181 "metallocarboxypeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

WB|WBGene00017136 ccpp-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 183 (69.5 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 43/89 (48%), Positives = 53/89 (59%)

Query:    47 GN-SYDDIYSSRASLVSLALPCKRWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNF 105
             GN SY D    + +LV  A     + +GNLGRVD  S  EYDLFIRPDT N ++R+WF F
Sbjct:     5 GNVSYPDTIPGQGNLVFEA----SFESGNLGRVDKVSCSEYDLFIRPDTLNNKYRVWFYF 60

Query:   106 VIDNTRLDQRVILNIVNMGKTKNLFRDGM 134
                N   +QR I NIVN  K + LF  G+
Sbjct:    61 ECKNASENQRAIFNIVNFSKQRTLFEMGI 89

GO:0004181 "metallocarboxypeptidase activity" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q09296 ccpp-6 "Cytosolic carboxypeptidase 6" [Caenorhabditis elegans (taxid:6239)]

 Score = 183 (69.5 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 43/89 (48%), Positives = 53/89 (59%)

Query:    47 GN-SYDDIYSSRASLVSLALPCKRWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNF 105
             GN SY D    + +LV  A     + +GNLGRVD  S  EYDLFIRPDT N ++R+WF F
Sbjct:     5 GNVSYPDTIPGQGNLVFEA----SFESGNLGRVDKVSCSEYDLFIRPDTLNNKYRVWFYF 60

Query:   106 VIDNTRLDQRVILNIVNMGKTKNLFRDGM 134
                N   +QR I NIVN  K + LF  G+
Sbjct:    61 ECKNASENQRAIFNIVNFSKQRTLFEMGI 89

GO:0035608 "protein deglutamylation" evidence=IMP

GO:0004181 "metallocarboxypeptidase activity" evidence=TAS

RGD|1561995 Agbl3 "ATP/GTP binding protein-like 3" [Rattus norvegicus (taxid:10116)]

 Score = 131 (51.2 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
 Identities = 26/69 (37%), Positives = 40/69 (57%)

Query:    69 RWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKN 128
             R+ +GNL +V   +++EY+L +RPD    +H  W+ F + NTR +      IVN  K  +
Sbjct:   174 RFESGNLQKVVKVADYEYELTVRPDLFTNKHTQWYYFQVTNTRAEIVYRFTIVNFTKPAS 233

Query:   129 LFRDGMTPL 137
             L+  GM PL
Sbjct:   234 LYNRGMRPL 242

GO:0004181 "metallocarboxypeptidase activity" evidence=IEA;ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NDJ1 AGBL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 138 (53.6 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 29/69 (42%), Positives = 39/69 (56%)

Query:    69 RWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKN 128
             R+ +GNL +V   +EFEY L +R D    RH  WF F + NT+        IVN  K K+
Sbjct:   150 RFESGNLQKVVKVNEFEYQLTLRTDLYTSRHVQWFYFQVSNTQAGMPYRFTIVNFTKRKS 209

Query:   129 LFRDGMTPL 137
             L+R G+ PL
Sbjct:   210 LYRHGLRPL 218

GO:0004181 "metallocarboxypeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5VU57	CBPC6_HUMAN	3, ., 4, ., 1, 7, ., -	0.7121	0.4583	0.1312	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	144
cd06908	261	cd06908, M14_AGBL4_like, Peptidase M14-like domain	8e-11
cd06236	308	cd06236, M14_AGBL5_like, Peptidase M14-like domain	2e-08
cd06235	258	cd06235, M14_Nna1_like_2, Peptidase M14-like domai	1e-06

>gnl|CDD|133118 cd06908, M14_AGBL4_like, Peptidase M14-like domain of ATP/GTP binding protein AGBL-4 and related proteins

 Score = 57.4 bits (139), Expect = 8e-11
 Identities = 25/47 (53%), Positives = 31/47 (65%)

Query: 8   PGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDIY 54
           P +     L+  L+ D   +LDF IDLHAHSSL   FIYGN+YDD+Y
Sbjct: 124 PTLHAVKNLLKELDNDSTTQLDFYIDLHAHSSLMNCFIYGNTYDDVY 170

Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain. Length = 261

>gnl|CDD|199860 cd06236, M14_AGBL5_like, Peptidase M14-like domain of ATP/GTP binding protein (AGBL)-5 and related proteins

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 2   NPSKGN-PGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDI 53
           NP     P I  A  L+  L++     L F IDLH H+S +G FIYGNS DD 
Sbjct: 142 NPDPQLHPSIYAAKALLLYLHEHFESGLAFYIDLHGHASKRGCFIYGNSLDDE 194

Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain. Length = 308

>gnl|CDD|199859 cd06235, M14_Nna1_like_2, Peptidase M14-like domain of human Nna1/AGTPBP-1, AGBL2 -5, and related proteins

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 16  LITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDIYSSR 57
           LI  L+Q++N+     IDLH HS  K  F+YG    D   + 
Sbjct: 134 LIKKLSQERNII--LFIDLHGHSRKKNSFMYGCENSDDPLNY 173

Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna1 cause Purkinje cell degeneration (pcd). The Nna1 CP domain is required to prevent the retinal photoreceptor loss and cerebellar ataxia phenotypes of pcd mice, and a functional zinc-binding domain is needed for Nna-1 to support neuron survival in these mice. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain. Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
KOG3641|consensus	650		99.89
KOG3641|consensus	650		98.83
cd06907	261	M14_AGBL2-3_like Peptidase M14-like domain of ATP/	98.18
cd06906	278	M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervo	98.14
cd06236	304	M14_AGBL5_like Peptidase M14-like domain of ATP/GT	98.13
cd06908	261	M14_AGBL4_like Peptidase M14-like domain of ATP/GT	98.0
cd06235	258	M14_Nna1_like_2 Subgroup of the Peptidase M14-like	97.39
cd03856	269	M14_Nna1_like Peptidase M14-like domain of Nna-1 (	96.84
cd06234	263	M14_Nna1_like_1 A bacterial subgroup of the Peptid	90.99

>KOG3641|consensus

Probab=99.89  E-value=6.9e-24  Score=187.59  Aligned_cols=133  Identities=25%  Similarity=0.309  Sum_probs=106.4

Q ss_pred             CCCCCCchHHHHHHHHHhhhCC-CcceeEEEeeccccccCCceeeecccC-cccccccccceecccCCcccCCCceeeee
Q psy13321          3 PSKGNPGISTALTLITSLNQDK-NLELDFIIDLHAHSSLKGLFIYGNSYD-DIYSSRASLVSLALPCKRWVAGNLGRVDF   80 (144)
Q Consensus         3 ~~~~~p~l~~~~~~~~~~~~~~-~~~l~f~~d~ha~S~~~g~fv~gNv~p-p~~r~~~~~~~l~f~~S~FesGNL~~v~~   80 (144)
                      |-+.||.++ .|+-|.+=.-+. ...|--.|+- ++-++.-..++++++. +..   .....|+| .|+||||||.+|.+
T Consensus       193 P~~~H~pi~-~k~pi~e~~~~~q~~ki~~~l~~-~~~sd~~~~vv~~ld~~~~~---p~~~~l~f-~s~fesgnLr~Viq  266 (650)
T KOG3641|consen  193 PAVLHPPIY-FKAPIVESRLNSQSSKISSCLPP-APVSDLEKAVVYDLDAHSTI---PHNAELWF-QSEFESGNLRSVIQ  266 (650)
T ss_pred             eecccCCCc-cCccceeccccccccchhhhcCC-CChhhhhhhhcccccCCcCC---CCCcceee-ecccccCCcceeEE
Confidence            445788888 666653322221 2333333444 6666666777777764 222   25688999 99999999999999


Q ss_pred             eCCeeEEEEecCCCCCCCeeeeEEEEEeccCCCeeEEEEEeccCccccccccCCeeEEEeee
Q psy13321         81 TSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRDGMTPLEETIL  142 (144)
Q Consensus        81 ~~~~ey~L~l~pD~~t~~~~qWFyF~V~~~~~~~~~~f~I~N~~k~~sly~~Gm~P~~~S~~  142 (144)
                      ++..||+|+++||++.+.|.|||||.|+| +++++++|+|+|+.|+.++|..||+|+|||.+
T Consensus       267 v~~~eydL~~~pDtn~~~~~~wfYfevsg-~~s~ry~FnivN~sk~~tqfe~gmqp~mys~n  327 (650)
T KOG3641|consen  267 VPQQEYDLFLAPDTNPNEYGVWFYFEVSG-RASVRYCFNIVNFSKSSTQFENGMQPKMYSLN  327 (650)
T ss_pred             ecccccceeecCCCCCcccceEEEEEecC-CcCcceEEEEEeeccchhHHhcccCcceeehh
Confidence            99999999999999999999999999999 89999999999999999999999999999974

>KOG3641|consensus

Probab=98.83  E-value=2.2e-09  Score=96.14  Aligned_cols=52  Identities=31%  Similarity=0.436  Sum_probs=48.8

Q ss_pred             CCCC-CCCchHHHHHHHHHhhhCCCcceeEEEeeccccccCCceeeecccCcc
Q psy13321          2 NPSK-GNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDI   53 (144)
Q Consensus         2 ~~~~-~~p~l~~~~~~~~~~~~~~~~~l~f~~d~ha~S~~~g~fv~gNv~pp~   53 (144)
                      .|++ +||+++|+|+||++|.+.++....+|+|+|+||.+.++|+|||+.++.
T Consensus       503 tps~~shPsi~~~k~li~~l~~~~~~~p~~Y~DlHgHSqK~n~FvYGnv~~~~  555 (650)
T KOG3641|consen  503 TPSPASHPSIYAVKQLIQQLSNVPHSRPLGYVDLHGHSQKVNHFVYGNVNEER  555 (650)
T ss_pred             CCCcccchhHHhHHHHHhhhhcccccCceEeecccccccccceEEecCcCCch
Confidence            3666 999999999999999999999999999999999999999999998776

>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins

Probab=98.18  E-value=2.2e-06  Score=70.94  Aligned_cols=49  Identities=29%  Similarity=0.418  Sum_probs=42.9

Q ss_pred             CCCC-CCCchHHHHHHHHHhhhCCCcceeEEEeeccccccCCceeeecccCc
Q psy13321          2 NPSK-GNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDD   52 (144)
Q Consensus         2 ~~~~-~~p~l~~~~~~~~~~~~~~~~~l~f~~d~ha~S~~~g~fv~gNv~pp   52 (144)
                      +|.+ .||+++++|++++.+.+  +..++++||+|+||...+.|+||+...+
T Consensus       120 ~p~~~~~P~i~~~k~li~~l~~--~~~i~~ylDlHghs~~~~~F~yG~~~~~  169 (261)
T cd06907         120 TPLKDSFPTIWYTKNMVKRLLE--EREVILYCDLHGHSRKNNVFMYGCENKL  169 (261)
T ss_pred             CCCcccCchHHHHHHHHHHHHh--cCCeEEEEEeccchhccceEeecCCCCC
Confidence            3555 89999999999999865  4789999999999999999999998643

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N

>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins

Probab=98.14  E-value=3.1e-06  Score=70.69  Aligned_cols=50  Identities=28%  Similarity=0.375  Sum_probs=43.1

Q ss_pred             CCCC-CCCchHHHHHHHHHhhhCCCcceeEEEeeccccccCCceeeecccCc
Q psy13321          2 NPSK-GNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDD   52 (144)
Q Consensus         2 ~~~~-~~p~l~~~~~~~~~~~~~~~~~l~f~~d~ha~S~~~g~fv~gNv~pp   52 (144)
                      +|.+ .||+++++|+|+..|.+. +..+.+|||+|+||...|.|+||+..+.
T Consensus       126 ~p~~~~~P~i~~~k~l~~~l~~~-~~~~~~yiDlHghs~~~~~F~yG~~~~~  176 (278)
T cd06906         126 SPNPELHPTIYHTKGLLQYLAAI-KRSPLVYCDYHGHSRKKNVFMYGCSIKE  176 (278)
T ss_pred             CCCcccChHHHHHHHHHHHHHHh-CCCceEEEeecccccccceEEeccCCCc
Confidence            4666 899999999999888654 4567899999999999999999998754

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna

>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins

Probab=98.13  E-value=2.9e-06  Score=71.64  Aligned_cols=51  Identities=45%  Similarity=0.694  Sum_probs=43.8

Q ss_pred             CCCC-CCCchHHHHHHHHHhhhCCCcceeEEEeeccccccCCceeeecccCccc
Q psy13321          2 NPSK-GNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDIY   54 (144)
Q Consensus         2 ~~~~-~~p~l~~~~~~~~~~~~~~~~~l~f~~d~ha~S~~~g~fv~gNv~pp~~   54 (144)
                      .|.+ .||+++|+|++|..+.+  +..+++|||+|+||.+.|.|+||+..+...
T Consensus       142 ~p~~~~~Pei~aik~~i~~~~~--~~~i~~yiDlH~hs~~~~~F~Yg~~~~~~~  193 (304)
T cd06236         142 NPDPELHPSIYAIKKLILYLHE--ESRLAFYIDLHAHASKRGCFIYGNALEDES  193 (304)
T ss_pred             CCCcccCHHHHHHHHHHHHhhc--cCCceEEEEecccccccceEeeecCCChHH
Confidence            3555 89999999999988853  568999999999999999999999876543

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal

>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins

Probab=98.00  E-value=7.3e-06  Score=67.74  Aligned_cols=51  Identities=51%  Similarity=0.900  Sum_probs=45.7

Q ss_pred             CCC-CCCchHHHHHHHHHhhhCCCcceeEEEeeccccccCCceeeecccCcc
Q psy13321          3 PSK-GNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDI   53 (144)
Q Consensus         3 ~~~-~~p~l~~~~~~~~~~~~~~~~~l~f~~d~ha~S~~~g~fv~gNv~pp~   53 (144)
                      |++ .||++.|+|+++.++.++.+..++++||+|+||...+.|.||+.++..
T Consensus       118 p~~~~~PEv~av~~~i~~~~~~~~~~i~~~lD~H~hs~~~~~F~yG~~~~~~  169 (261)
T cd06908         118 PSPWAHPTLHAVKNLLKELDNDSTTQLDFYIDLHAHSSLMNCFIYGNTYDDV  169 (261)
T ss_pred             CCcccChHHHHHHHHHHHhhhccccCeeEEEEeeccccccceeeccccCCcc
Confidence            545 899999999999999887788999999999999999999999986543

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal

>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins

Probab=97.39  E-value=0.00024  Score=58.35  Aligned_cols=49  Identities=41%  Similarity=0.589  Sum_probs=42.7

Q ss_pred             CCC-CCCchHHHHHHHHHhhhCCCcceeEEEeeccccccCCceeeecccCcc
Q psy13321          3 PSK-GNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDI   53 (144)
Q Consensus         3 ~~~-~~p~l~~~~~~~~~~~~~~~~~l~f~~d~ha~S~~~g~fv~gNv~pp~   53 (144)
                      |.+ .||..+++|+++.++.+  +..+++++|+|+||...|.|+||+-..+.
T Consensus       120 p~~~~~PE~~~~~~~i~~~~~--~~~~~~~iDlH~~s~~~~~F~yg~~~~~~  169 (258)
T cd06235         120 PDKKLHPEIYHVKQLIKKLSQ--ERNIALFIDLHGHSRKKNSFMYGCSNSDD  169 (258)
T ss_pred             CCcccCcHHHHHHHHHHHHhc--cCCceEEEecccccccCCeeeecCCCCCc
Confidence            544 89999999999988854  66799999999999999999999987654

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc

>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins

Probab=96.84  E-value=0.002  Score=53.33  Aligned_cols=49  Identities=35%  Similarity=0.527  Sum_probs=42.0

Q ss_pred             CCC-CCCchHHHHHHHHHhhhCCCcceeEEEeeccccccCCceeeecccCc
Q psy13321          3 PSK-GNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDD   52 (144)
Q Consensus         3 ~~~-~~p~l~~~~~~~~~~~~~~~~~l~f~~d~ha~S~~~g~fv~gNv~pp   52 (144)
                      |.+ .||...++|+++.++.++ +..+++++|+|+|++..+.|+||+-.++
T Consensus       128 p~~~~~pE~~~~~~~~~~~~~~-~~~~~~~idlH~~~~~~~~f~yG~~~~~  177 (269)
T cd03856         128 PSPDLHPEIYLVKGLMLYLAAG-KRGVLFYCDFHGHSRKKNVFMYGCSFKD  177 (269)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhc-cCCceEEEEecCCCccCceEeecCCCch
Confidence            555 899999999999887553 4589999999999999999999988643

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M

>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins

Probab=90.99  E-value=0.36  Score=40.00  Aligned_cols=46  Identities=24%  Similarity=0.364  Sum_probs=36.6

Q ss_pred             CCC-CCCchHHHHHHHHHhhhCCCcceeEEEeeccccccCCceeeecccCccc
Q psy13321          3 PSK-GNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDIY   54 (144)
Q Consensus         3 ~~~-~~p~l~~~~~~~~~~~~~~~~~l~f~~d~ha~S~~~g~fv~gNv~pp~~   54 (144)
                      |++ .+|...++++++.+      ..+++++|+|+++.+..+|.+|....|.+
T Consensus       131 p~~~s~PEt~av~~~~~~------~~~~~~ld~Hs~~~~py~f~~g~~~~p~~  177 (263)
T cd06234         131 PSAERSPEVFAVRQRMEE------TGVDFFLDVHGDEALPYNFIAGSEGVPGW  177 (263)
T ss_pred             CCCCCCHHHHHHHHHHHh------cCCeEEEEeCCCCCCCccEeccCCCCCCc
Confidence            444 78999999998843      36999999999999988999887654433

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
4a37_A	388	Metallo-carboxypeptidase; metallo-protease, hydrol	7e-15
3l2n_A	395	Peptidase M14, carboxypeptidase A; putative carbox	3e-12
3k2k_A	403	Putative carboxypeptidase; structural genomics, jo	6e-09

>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A {Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A* Length = 388

 Score = 69.0 bits (168), Expect = 7e-15
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 72  AGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFR 131
           +GN+  +D +      L IRPD    +H  WF+F ++           +VN G++     
Sbjct: 22  SGNIQVIDASDPRRIRLAIRPD-LASQHFQWFHFKVEGMAPATEHCFTLVNAGQSAYSHA 80

Query: 132 DGMTP 136
                
Sbjct: 81  WSGYQ 85

>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A, structural genomics, joint CENT structural genomics, JCSG; 2.39A {Shewanella denitrificans} Length = 395

 Score = 61.3 bits (148), Expect = 3e-12
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 72  AGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFR 131
            GN+  +   +  +  L IRPD        WFNF  + T   +   LNI+N G    L  
Sbjct: 28  GGNIETISLANPDDIQLAIRPD-AGGEFYQWFNFRFEATI-GKTYTLNILNAGGASYLKG 85

Query: 132 DGMTP 136
                
Sbjct: 86  WEDYQ 90

>3k2k_A Putative carboxypeptidase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.49A {Burkholderia mallei atcc 23344} Length = 403

 Score = 52.1 bits (124), Expect = 6e-09
 Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 2/57 (3%)

Query: 72  AGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKN 128
           AG +  V         L +R D        WF F +   R  +R ++   N      
Sbjct: 30  AGAIDVVSCERADAIRLRVRGDN-RSEFAQWFYFRLTGAR-GERCVMTFENANDCAY 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
4a37_A	388	Metallo-carboxypeptidase; metallo-protease, hydrol	99.85
3l2n_A	395	Peptidase M14, carboxypeptidase A; putative carbox	99.84
3k2k_A	403	Putative carboxypeptidase; structural genomics, jo	99.83
3l2n_A	395	Peptidase M14, carboxypeptidase A; putative carbox	85.82
4a37_A	388	Metallo-carboxypeptidase; metallo-protease, hydrol	80.23

>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A {Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*

Probab=99.85  E-value=1.5e-22  Score=172.45  Aligned_cols=74  Identities=20%  Similarity=0.410  Sum_probs=67.1

Q ss_pred             ccceecccCCcccCCCceeeeeeCCeeEEEEecCCCCCCCeeeeEEEEEeccCCCeeEEEEEeccCccccccccCCee
Q psy13321         59 SLVSLALPCKRWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRDGMTP  136 (144)
Q Consensus        59 ~~~~l~f~~S~FesGNL~~v~~~~~~ey~L~l~pD~~t~~~~qWFyF~V~~~~~~~~~~f~I~N~~k~~sly~~Gm~P  136 (144)
                      ..++|.| +|+||||||.+|.++++.+|+|+|+||+++ +|+|||||+|+|.+++++|+|+|+|+.|  ++|++||+|
T Consensus        10 ~~~~l~f-~s~FesGnl~~~~~~~~~~~~l~i~~D~~~-~~~qWf~F~v~~~~~~~~~~~~i~n~~~--s~y~~g~~~   83 (388)
T 4a37_A           10 EKGAMQI-RADFDSGNIQVIDASDPRRIRLAIRPDLAS-QHFQWFHFKVEGMAPATEHCFTLVNAGQ--SAYSHAWSG   83 (388)
T ss_dssp             ----CEE-ECCSTTCBCEEEECSCTTSEEEECCCCTTS-SCCCCCEEEEESCCTTCCEEEEETTGGG--STTGGGGTT
T ss_pred             CCCCEEE-eccCCCCccEEEEecCCcEEEEEECCCCCC-CcceeeEEEEecCCCCeEEEEEEEeCch--hhhhccccc
Confidence            3577999 999999999999999999999999999987 8999999999999999999999999987  499999876

>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A, structural genomics, joint CENT structural genomics, JCSG; 2.39A {Shewanella denitrificans}

Probab=99.84  E-value=1e-21  Score=167.78  Aligned_cols=72  Identities=25%  Similarity=0.507  Sum_probs=65.7

Q ss_pred             cceecccCCcccCCCceeeeeeCCeeEEEEecCCCCCCCeeeeEEEEEeccCCCeeEEEEEeccCccccccccCCee
Q psy13321         60 LVSLALPCKRWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRDGMTP  136 (144)
Q Consensus        60 ~~~l~f~~S~FesGNL~~v~~~~~~ey~L~l~pD~~t~~~~qWFyF~V~~~~~~~~~~f~I~N~~k~~sly~~Gm~P  136 (144)
                      ...+.| +|+||||||.+|.++++.||+|+|+||+++ +++|||||+|+|. ++++|+|+|+|+.|  ++|++||+|
T Consensus        17 ~~~~~f-~s~FesGnl~~~~~~~~~~~~L~i~~D~~~-~~~qWF~F~v~~~-~~~~~~~~i~N~~~--s~y~~g~~~   88 (395)
T 3l2n_A           17 FQGMRI-SANFDGGNIETISLANPDDIQLAIRPDAGG-EFYQWFNFRFEAT-IGKTYTLNILNAGG--ASYLKGWED   88 (395)
T ss_dssp             ---CEE-ECCSTTCBCEEEEEEETTEEEEECCCCTTS-SCCCCCEEEEECC-TTSEEEEEETTGGG--SSCGGGGTT
T ss_pred             cCCcEE-eccCCCCCceEEEecCCCEEEEEECCCCCC-CCceeEEEEEEcC-CCcEEEEEEEecch--hhhhccccc
Confidence            366899 999999999999999999999999999987 8999999999999 89999999999987  499999976

>3k2k_A Putative carboxypeptidase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.49A {Burkholderia mallei atcc 23344}

Probab=99.83  E-value=1.3e-21  Score=167.60  Aligned_cols=73  Identities=18%  Similarity=0.333  Sum_probs=68.5

Q ss_pred             ccceecccCCcccCCCceeeeeeCCeeEEEEecCCCCCCCeeeeEEEEEeccCCCeeEEEEEeccCccccccccCCee
Q psy13321         59 SLVSLALPCKRWVAGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFRDGMTP  136 (144)
Q Consensus        59 ~~~~l~f~~S~FesGNL~~v~~~~~~ey~L~l~pD~~t~~~~qWFyF~V~~~~~~~~~~f~I~N~~k~~sly~~Gm~P  136 (144)
                      ....|.| +|+||||||.+|.++++.+|+|.|+||+++ +++|||||+|+|. ++++++|+|+|+.|+  +|++||+|
T Consensus        18 ~~~~l~f-~s~FesGnl~~~~~~~~~~~~L~i~~D~~~-~~~qWF~F~v~~~-~~~~~~~~i~N~~~s--~y~~g~~~   90 (403)
T 3k2k_A           18 QGMTLSI-TSNFDAGAIDVVSCERADAIRLRVRGDNRS-EFAQWFYFRLTGA-RGERCVMTFENANDC--AYPAGWRD   90 (403)
T ss_dssp             CSCCCEE-ECCSTTCBCEEEECSSGGGEEEECCCCTTS-SCCCCCEEEEESC-TTCCEEEEETTGGGS--SCGGGGTT
T ss_pred             CCCceEE-eccCCCCCceEEEecCCCEEEEEECCCCCC-CCceeeEEEEecC-CCeEEEEEEcccchh--hhhccccc
Confidence            3578999 999999999999999999999999999987 8999999999999 899999999999874  99999876

>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A, structural genomics, joint CENT structural genomics, JCSG; 2.39A {Shewanella denitrificans}

Probab=85.82  E-value=0.72  Score=38.92  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=34.2

Q ss_pred             CCCchHHHHHHHHHhhhCCCcceeEEEeeccccccCCceeeecccC
Q psy13321          6 GNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYD   51 (144)
Q Consensus         6 ~~p~l~~~~~~~~~~~~~~~~~l~f~~d~ha~S~~~g~fv~gNv~p   51 (144)
                      .+|...|+++++.+.      .++++||+|+++....+|.+|+...
T Consensus       255 sepEt~a~~~~l~~~------~~~~~iDlHs~~~~p~~f~~g~~~~  294 (395)
T 3l2n_A          255 RSPEVYYVVNKMHET------GVDLFYDVHGDEGLPYVFLAGCEGI  294 (395)
T ss_dssp             TCHHHHHHHHHHHHH------CCSEEEEEEEESSCSSBEEECCTTS
T ss_pred             CCHHHHHHHHHHHhC------CCcEEEEeccCCCCCceEeccccCC
Confidence            689999999998654      5899999999999988999887543

>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A {Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*

Probab=80.23  E-value=1.6  Score=36.53  Aligned_cols=39  Identities=15%  Similarity=0.295  Sum_probs=33.1

Q ss_pred             CCCchHHHHHHHHHhhhCCCcceeEEEeeccccccCCceeeeccc
Q psy13321          6 GNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSY   50 (144)
Q Consensus         6 ~~p~l~~~~~~~~~~~~~~~~~l~f~~d~ha~S~~~g~fv~gNv~   50 (144)
                      .+|...|+++++.+.      .+++++|+|+++....++.+|...
T Consensus       250 s~pEt~al~~~~~~~------~~~~~iDlHs~~~~p~~~~yg~~~  288 (388)
T 4a37_A          250 RSPEVWFVQQEMKRH------GVDLFLDIHGDEEIPHVFAAGCEG  288 (388)
T ss_dssp             TCHHHHHHHHHHHHH------CCSEEEEEEEESSCSSCEEECCTT
T ss_pred             cCHHHHHHHHHHHhc------CCcEEEEeccCCCCCCeEecCCcc
Confidence            689999999988654      589999999999988899887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00