Psyllid ID: psy13326

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MKEAHGNSQFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTGCARKTLTMAQGRHHFQQGTVGHFPNFGFISEKSKVQKTTKMSVFRS
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHcccccccccccccccccccccHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccccccccHHHHHccccccEEEEEcc
Coil and Loop (DISEMBL)
mkeahgnsqfssdssTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLAlgnpvtgtnVFGMMLAICGVLAYNKVSTYTGCARKTLTmaqgrhhfqqgtvghfpnfgfisekskvqkttkmsvfrs
Flexible Loop (DISEMBL)
mkeahgnsqfssdssTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTGCARKTLTMAQGRHHFQQGTVGHFPNFGFIsekskvqkttkmsvfrs
Low Complexity Region (SEG)
MKEAHGNSQFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTGCARKTLTMAQGRHHFQQGTVGHFPNFGFISEKSKVQKTTKMSVFRS
Disordered region (IsUnstruct)
****************KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTGCARKTLTMAQGRHHFQQGTVGHFPNFGFI*****************
Disordered Region (DISOPRED)
********QFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN*****************************************************
Disordered Region (DISEMBL)
**************STKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTGCARKTLTMAQGRHHFQQGTVGHFPNFGFISEKS*************
Disordered Region (DISPRO)
***********SDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTGCARK******************FPNFGFISEKSKVQKTTKMSVFRS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEAHGNSQFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTGCARKTLTMAQGRHHFQQGTVGHFPNFGFISEKSKVQKTTKMSVFRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q9VR50	373	Solute carrier family 35	yes	N/A	0.636	0.243	0.673	2e-25
P0C6B1	409	Solute carrier family 35	yes	N/A	0.510	0.178	0.561	1e-16
Q96K37	410	Solute carrier family 35	yes	N/A	0.510	0.178	0.561	2e-16
Q8CD26	409	Solute carrier family 35	yes	N/A	0.510	0.178	0.547	4e-16
Q8C811	405	Solute carrier family 35	no	N/A	0.734	0.259	0.333	4e-09
P0CK96	405	Solute carrier family 35	no	N/A	0.727	0.256	0.346	5e-09
O94695	449	Putative transporter C83.	yes	N/A	0.580	0.184	0.356	1e-06
P39542	402	Uncharacterized transport	yes	N/A	0.517	0.184	0.324	3e-06
P22215	453	Uncharacterized transport	no	N/A	0.594	0.187	0.344	4e-06
P11869	404	Triose phosphate/phosphat	N/A	N/A	0.615	0.217	0.370	8e-06

>sp|Q9VR50|S35E1_DROME Solute carrier family 35 member E1 homolog OS=Drosophila melanogaster GN=CG14621 PE=2 SV=1

 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 71/92 (77%), Gaps = 1/92 (1%)

Query: 17  KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNV 76
           +VI LL  DG+L+WLQNI+AFSV+SLVT LTYAVASASKRIFVIAVSLL LGNPVT  N 
Sbjct: 227 RVIALLFADGVLNWLQNIIAFSVLSLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNC 286

Query: 77  FGMMLAICGVLAYNKVSTYT-GCARKTLTMAQ 107
            GM LAI GVL YN+    T G  + TL ++Q
Sbjct: 287 VGMTLAIVGVLCYNRAKQLTRGREQPTLPLSQ 318

Putative transporter.
Drosophila melanogaster (taxid: 7227)

>sp|P0C6B1|S35E1_RAT Solute carrier family 35 member E1 OS=Rattus norvegicus GN=Slc35e1 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 57/73 (78%)

Query: 19  IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFG 78
           + LL + G  ++ QN++AFS+++L++ L+Y+VA+A+KRI VIAVSL+ L NPVT TNV G
Sbjct: 262 LLLLVVSGFCNFAQNVIAFSILNLISPLSYSVANATKRIMVIAVSLIMLRNPVTSTNVLG 321

Query: 79  MMLAICGVLAYNK 91
           MM AI GV  YNK
Sbjct: 322 MMTAILGVFLYNK 334

Putative transporter.

Rattus norvegicus (taxid: 10116)

>sp|Q96K37|S35E1_HUMAN Solute carrier family 35 member E1 OS=Homo sapiens GN=SLC35E1 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 56/73 (76%)

Query: 19  IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFG 78
           + LL + G  ++ QN++AFS+++LV+ L+Y+VA+A+KRI VI VSL+ L NPVT TNV G
Sbjct: 262 LLLLAVSGFCNFAQNVIAFSILNLVSPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLG 321

Query: 79  MMLAICGVLAYNK 91
           MM AI GV  YNK
Sbjct: 322 MMTAILGVFLYNK 334

Putative transporter.

Homo sapiens (taxid: 9606)

>sp|Q8CD26|S35E1_MOUSE Solute carrier family 35 member E1 OS=Mus musculus GN=Slc35e1 PE=1 SV=2

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 56/73 (76%)

Query: 19  IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFG 78
           + LL + G  ++ QN++AFS+++L++ L+Y+VA+A+KRI VI VSL+ L NPVT TNV G
Sbjct: 262 LLLLAVSGFCNFAQNVIAFSILNLISPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLG 321

Query: 79  MMLAICGVLAYNK 91
           MM AI GV  YNK
Sbjct: 322 MMTAILGVFLYNK 334

Putative transporter.

Mus musculus (taxid: 10090)

>sp|Q8C811|S35E2_MOUSE Solute carrier family 35 member E2 OS=Mus musculus GN=Slc35e2 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 56/105 (53%)

Query: 6   GNSQFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLL 65
           G S  S   S  ++ LL  DG L  LQ++ A+++M  ++ +T++VAS  K    I +S++
Sbjct: 284 GRSGKSFSYSQDIVLLLLTDGALFHLQSVTAYALMGKISPVTFSVASTVKHALSIWLSII 343

Query: 66  ALGNPVTGTNVFGMMLAICGVLAYNKVSTYTGCARKTLTMAQGRH 110
             GN +T  +  G +L   GVL YNK   Y     ++L  A  R+
Sbjct: 344 VFGNKITSLSAIGTILVTLGVLLYNKARQYQQETMQSLVTATSRN 388

Putative transporter.

Mus musculus (taxid: 10090)

>sp|P0CK96|S352B_HUMAN Solute carrier family 35 member E2B OS=Homo sapiens GN=SLC35E2B PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 57/104 (54%)

Query: 6   GNSQFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLL 65
           G S  S   +  V+ LL  DG+L  LQ++ A+++M  ++ +T++VAS  K    I +S++
Sbjct: 284 GRSGKSFSYNQDVVLLLLTDGVLFHLQSVTAYALMGKISPVTFSVASTVKHALSIWLSVI 343

Query: 66  ALGNPVTGTNVFGMMLAICGVLAYNKVSTYTGCARKTLTMAQGR 109
             GN +T  +  G  L   GVL YNK   +   A ++L  A GR
Sbjct: 344 VFGNKITSLSAVGTALVTVGVLLYNKARQHQQEALQSLAAATGR 387

Putative transporter.

Homo sapiens (taxid: 9606)

>sp|O94695|YG1B_SCHPO Putative transporter C83.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC83.11 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 19  IFL-LCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVF 77
           +FL L  +G+  + QNILAF+++S+++ + Y++AS  KRIFVI VS++        T   
Sbjct: 239 VFLNLIYNGLSHFFQNILAFTLLSIISPVAYSIASLIKRIFVIVVSIIWFQQATNFTQGS 298

Query: 78  GMMLAICGVLAYN---KVSTYTGCARK 101
           G+ L   G+  Y+   K + Y  C  K
Sbjct: 299 GIFLTAIGLWLYDRSKKGNLYESCKVK 325

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P39542|YJT3_YEAST Uncharacterized transporter YJL193W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJL193W PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 46/74 (62%)

Query: 21  LLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMM 80
           L  L+G   ++Q ++ F ++  V++LTY++A+  KR  +IAVS + +G  +T   VFG++
Sbjct: 318 LFLLNGTFHFIQAMITFHLLGEVSTLTYSIANLMKRFAIIAVSWVFIGRRITWLQVFGLV 377

Query: 81  LAICGVLAYNKVST 94
           L   G+  Y + ++
Sbjct: 378 LNTLGLFLYERCTS 391

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P22215|SLY41_YEAST Uncharacterized transporter SLY41 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLY41 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 5   HGNSQFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSL 64
           HG S  + D + + + L+ + G+  + Q +LAF ++ L++S+ Y+VA+  KRI VI+V+L
Sbjct: 358 HGGSVIN-DLTLETVALVAIHGIAHFFQAMLAFQLIGLLSSINYSVANIMKRIVVISVAL 416

Query: 65  LALGNPVTGTNVFGMMLAICGVLAYNK 91
                 +    VFG++L I G+  Y+K
Sbjct: 417 F-WETKLNFFQVFGVILTIAGLYGYDK 442

Able to suppress the functional loss of YPT1. May form a channel. Protein SLY41 is not essential for cell viability. The SLY41 gene is a multicopy suppressor.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P11869|TPT_SPIOL Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 5   HG-NSQFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVS 63
           HG N   +    TK I  L   GM   L N LA + +  V  LT+AV +  KR+FVI  S
Sbjct: 302 HGFNDAIAKVGLTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFS 361

Query: 64  LLALGNPVTGTNVFGMMLAICGVLAYNKV 92
           ++A GN ++     G  +AI GV  Y+ +
Sbjct: 362 IIAFGNKISTQTAIGTSIAIAGVALYSLI 390

Mediates the export of fixed carbons from the chloroplasts into the cytosol in the form of triose phosphates.

Spinacia oleracea (taxid: 3562)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
156545082	352	PREDICTED: solute carrier family 35 memb	0.573	0.232	0.731	1e-26
91090644	368	PREDICTED: similar to conserved hypothet	0.720	0.279	0.631	2e-26
340727169	349	PREDICTED: solute carrier family 35 memb	0.566	0.232	0.728	8e-25
350424686	349	PREDICTED: solute carrier family 35 memb	0.566	0.232	0.728	8e-25
48096658	350	PREDICTED: solute carrier family 35 memb	0.699	0.285	0.613	1e-24
195482362	373	GE17936 [Drosophila yakuba] gi|194189541	0.657	0.252	0.663	2e-24
380020522	350	PREDICTED: solute carrier family 35 memb	0.699	0.285	0.613	2e-24
194897776	373	GG19741 [Drosophila erecta] gi|190650369	0.657	0.252	0.663	3e-24
194763841	377	GF20934 [Drosophila ananassae] gi|190618	0.657	0.249	0.663	3e-24
195356141	373	GM11727 [Drosophila sechellia] gi|194132	0.657	0.252	0.663	4e-24

>gi|156545082|ref|XP_001601391.1| PREDICTED: solute carrier family 35 member E1 homolog isoform 1 [Nasonia vitripennis] gi|345481936|ref|XP_003424488.1| PREDICTED: solute carrier family 35 member E1 homolog isoform 2 [Nasonia vitripennis]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 73/82 (89%)

Query: 10  FSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGN 69
           F++D+S++ I LL +DG+L+WLQNI+AFSVMS+VT LTYAVASASKRIFVIAV+L  LGN
Sbjct: 226 FTTDNSSRTITLLLIDGILNWLQNIVAFSVMSIVTPLTYAVASASKRIFVIAVTLFILGN 285

Query: 70  PVTGTNVFGMMLAICGVLAYNK 91
           PVTGTNV GM++AI GVL YNK
Sbjct: 286 PVTGTNVLGMVMAIGGVLCYNK 307

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090644|ref|XP_973866.1| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] gi|270013322|gb|EFA09770.1| hypothetical protein TcasGA2_TC011911 [Tribolium castaneum]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 76/103 (73%)

Query: 17  KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNV 76
           +VI LL +DG+L+WLQNI+AFSV+SLVT LTYAVA+ASKRIFVIAVSL  LGNPVTGTNV
Sbjct: 226 RVIGLLIMDGVLNWLQNIIAFSVLSLVTPLTYAVANASKRIFVIAVSLFILGNPVTGTNV 285

Query: 77  FGMMLAICGVLAYNKVSTYTGCARKTLTMAQGRHHFQQGTVGH 119
           FGM+LAI GVL YNK       A K  T+     +  Q   G+
Sbjct: 286 FGMLLAIFGVLLYNKAKYDAKQAEKKQTILPYSQNSWQDRTGY 328

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727169|ref|XP_003401921.1| PREDICTED: solute carrier family 35 member E1 homolog [Bombus terrestris]

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 59/81 (72%), Positives = 68/81 (83%)

Query: 11  SSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNP 70
           S+D S  +I LL LDG+L+WLQNI+AFSV+S+VT LTYAVASASKRIFVIAV+L  LGNP
Sbjct: 224 SADLSYYIICLLILDGVLNWLQNIIAFSVLSIVTPLTYAVASASKRIFVIAVTLFVLGNP 283

Query: 71  VTGTNVFGMMLAICGVLAYNK 91
           VT  N+FGM LAI GVL YNK
Sbjct: 284 VTWLNIFGMTLAILGVLCYNK 304

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424686|ref|XP_003493879.1| PREDICTED: solute carrier family 35 member E1 homolog [Bombus impatiens]

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 59/81 (72%), Positives = 68/81 (83%)

Query: 11  SSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNP 70
           S+D S  +I LL LDG+L+WLQNI+AFSV+S+VT LTYAVASASKRIFVIAV+L  LGNP
Sbjct: 224 SADLSYYIICLLLLDGVLNWLQNIIAFSVLSIVTPLTYAVASASKRIFVIAVTLFVLGNP 283

Query: 71  VTGTNVFGMMLAICGVLAYNK 91
           VT  N+FGM LAI GVL YNK
Sbjct: 284 VTWLNIFGMTLAILGVLCYNK 304

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48096658|ref|XP_394742.1| PREDICTED: solute carrier family 35 member E1 homolog isoform 1 [Apis mellifera]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 74/101 (73%), Gaps = 1/101 (0%)

Query: 11  SSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNP 70
           S+D S  +I LL LDG+L+W QNI+AFSV+S+VT LTYAVASASKRIFVIAV+L  LGNP
Sbjct: 224 SADISYYIIGLLFLDGVLNWFQNIIAFSVLSIVTPLTYAVASASKRIFVIAVTLFVLGNP 283

Query: 71  VTGTNVFGMMLAICGVLAYNKVSTYTGCARKTLTMAQGRHH 111
           VT  N+FGM LAI GVL YNK + Y     K    A  ++H
Sbjct: 284 VTWLNIFGMTLAILGVLCYNK-AKYDQRIEKESQTALPKYH 323

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195482362|ref|XP_002102017.1| GE17936 [Drosophila yakuba] gi|194189541|gb|EDX03125.1| GE17936 [Drosophila yakuba]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 72/95 (75%), Gaps = 1/95 (1%)

Query: 17  KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNV 76
           +VI LL  DG+L+WLQNI+AFSV+SLVT LTYAVASASKRIFVIAVSLL LGNPVT  N 
Sbjct: 227 RVIALLFADGVLNWLQNIIAFSVLSLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNC 286

Query: 77  FGMMLAICGVLAYNKVSTYT-GCARKTLTMAQGRH 110
            GM LAI GVL YN+    T G  + TL ++Q  H
Sbjct: 287 LGMTLAIVGVLCYNRAKQITRGREQPTLPLSQTSH 321

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020522|ref|XP_003694132.1| PREDICTED: solute carrier family 35 member E1 homolog [Apis florea]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 74/101 (73%), Gaps = 1/101 (0%)

Query: 11  SSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNP 70
           S+D S  +I LL LDG+L+W QNI+AFSV+S+VT LTYAVASASKRIFVIAV+L  LGNP
Sbjct: 224 SADISYYIIGLLFLDGVLNWFQNIIAFSVLSIVTPLTYAVASASKRIFVIAVTLFVLGNP 283

Query: 71  VTGTNVFGMMLAICGVLAYNKVSTYTGCARKTLTMAQGRHH 111
           VT  N+FGM LAI GVL YNK + Y     K    A  ++H
Sbjct: 284 VTWLNIFGMTLAILGVLCYNK-AKYDQRMEKEGQTALPKYH 323

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194897776|ref|XP_001978720.1| GG19741 [Drosophila erecta] gi|190650369|gb|EDV47647.1| GG19741 [Drosophila erecta]

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 72/95 (75%), Gaps = 1/95 (1%)

Query: 17  KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNV 76
           +VI LL  DG+L+WLQNI+AFSV+SLVT LTYAVASASKRIFVIAVSLL LGNPVT  N 
Sbjct: 227 RVIALLFADGVLNWLQNIIAFSVLSLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNC 286

Query: 77  FGMMLAICGVLAYNKVSTYT-GCARKTLTMAQGRH 110
            GM LAI GVL YN+    T G  + TL ++Q  H
Sbjct: 287 VGMTLAIVGVLCYNRAKQITRGREQPTLPLSQTSH 321

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194763841|ref|XP_001964041.1| GF20934 [Drosophila ananassae] gi|190618966|gb|EDV34490.1| GF20934 [Drosophila ananassae]

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 71/95 (74%), Gaps = 1/95 (1%)

Query: 17  KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNV 76
           +VI LL  DG+L+WLQNI+AFSV+SLVT LTYAVASASKRIFVIAVSLL LGNPVT  N 
Sbjct: 228 RVIALLFADGVLNWLQNIIAFSVLSLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNC 287

Query: 77  FGMMLAICGVLAYNKVSTYT-GCARKTLTMAQGRH 110
            GM LAI GVL YN+    T G    TL ++Q  H
Sbjct: 288 VGMTLAIVGVLCYNRAKQITKGREPPTLPLSQPSH 322

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195356141|ref|XP_002044539.1| GM11727 [Drosophila sechellia] gi|194132161|gb|EDW53788.1| GM11727 [Drosophila sechellia]

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 71/95 (74%), Gaps = 1/95 (1%)

Query: 17  KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNV 76
           +VI LL  DG+L+WLQNI+AFSV+SLVT LTYAVASASKRIFVIAVSLL LGNPVT  N 
Sbjct: 227 RVIALLFADGVLNWLQNIIAFSVLSLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNC 286

Query: 77  FGMMLAICGVLAYNKVSTYT-GCARKTLTMAQGRH 110
            GM LAI GVL YN+    T G    TL ++Q  H
Sbjct: 287 VGMTLAILGVLCYNRAKQITRGREHPTLPLSQTSH 321

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
FB|FBgn0031183	373	CG14621 [Drosophila melanogast	0.636	0.243	0.673	9.7e-25
UNIPROTKB|C9JK45	116	SLC35E1 "Solute carrier family	0.510	0.629	0.561	3.2e-17
RGD|1561342	409	Slc35e1 "solute carrier family	0.510	0.178	0.561	7.1e-17
UNIPROTKB|P0C6B1	409	Slc35e1 "Solute carrier family	0.510	0.178	0.561	7.1e-17
UNIPROTKB|Q96K37	410	SLC35E1 "Solute carrier family	0.510	0.178	0.561	1.2e-16
UNIPROTKB|F1NE93	383	SLC35E1 "Uncharacterized prote	0.510	0.190	0.547	1.2e-16
MGI|MGI:2142403	409	Slc35e1 "solute carrier family	0.510	0.178	0.547	1.5e-16
UNIPROTKB|E2RIR4	410	SLC35E1 "Uncharacterized prote	0.510	0.178	0.547	1.5e-16
UNIPROTKB|F1S9W2	412	SLC35E1 "Uncharacterized prote	0.510	0.177	0.547	1.6e-16
ZFIN|ZDB-GENE-040426-2033	375	slc35e1 "solute carrier family	0.545	0.208	0.538	2.4e-16

FB|FBgn0031183 CG14621 [Drosophila melanogaster (taxid:7227)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 62/92 (67%), Positives = 71/92 (77%)

Query:    17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNV 76
             +VI LL  DG+L+WLQNI+AFSV+SLVT LTYAVASASKRIFVIAVSLL LGNPVT  N 
Sbjct:   227 RVIALLFADGVLNWLQNIIAFSVLSLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNC 286

Query:    77 FGMMLAICGVLAYNKVSTYT-GCARKTLTMAQ 107
              GM LAI GVL YN+    T G  + TL ++Q
Sbjct:   287 VGMTLAIVGVLCYNRAKQLTRGREQPTLPLSQ 318

GO:0008524 "glucose 6-phosphate:phosphate antiporter activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|C9JK45 SLC35E1 "Solute carrier family 35 member E1" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 41/73 (56%), Positives = 56/73 (76%)

Query:    19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFG 78
             + LL + G  ++ QN++AFS+++LV+ L+Y+VA+A+KRI VI VSL+ L NPVT TNV G
Sbjct:    13 LLLLAVSGFCNFAQNVIAFSILNLVSPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLG 72

Query:    79 MMLAICGVLAYNK 91
             MM AI GV  YNK
Sbjct:    73 MMTAILGVFLYNK 85

GO:0016021 "integral to membrane" evidence=IEA

RGD|1561342 Slc35e1 "solute carrier family 35, member E1" [Rattus norvegicus (taxid:10116)]

 Score = 213 (80.0 bits), Expect = 7.1e-17, P = 7.1e-17
 Identities = 41/73 (56%), Positives = 57/73 (78%)

Query:    19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFG 78
             + LL + G  ++ QN++AFS+++L++ L+Y+VA+A+KRI VIAVSL+ L NPVT TNV G
Sbjct:   262 LLLLVVSGFCNFAQNVIAFSILNLISPLSYSVANATKRIMVIAVSLIMLRNPVTSTNVLG 321

Query:    79 MMLAICGVLAYNK 91
             MM AI GV  YNK
Sbjct:   322 MMTAILGVFLYNK 334

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P0C6B1 Slc35e1 "Solute carrier family 35 member E1" [Rattus norvegicus (taxid:10116)]

 Score = 213 (80.0 bits), Expect = 7.1e-17, P = 7.1e-17
 Identities = 41/73 (56%), Positives = 57/73 (78%)

Query:    19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFG 78
             + LL + G  ++ QN++AFS+++L++ L+Y+VA+A+KRI VIAVSL+ L NPVT TNV G
Sbjct:   262 LLLLVVSGFCNFAQNVIAFSILNLISPLSYSVANATKRIMVIAVSLIMLRNPVTSTNVLG 321

Query:    79 MMLAICGVLAYNK 91
             MM AI GV  YNK
Sbjct:   322 MMTAILGVFLYNK 334

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96K37 SLC35E1 "Solute carrier family 35 member E1" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 41/73 (56%), Positives = 56/73 (76%)

Query:    19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFG 78
             + LL + G  ++ QN++AFS+++LV+ L+Y+VA+A+KRI VI VSL+ L NPVT TNV G
Sbjct:   262 LLLLAVSGFCNFAQNVIAFSILNLVSPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLG 321

Query:    79 MMLAICGVLAYNK 91
             MM AI GV  YNK
Sbjct:   322 MMTAILGVFLYNK 334

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NE93 SLC35E1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 210 (79.0 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 40/73 (54%), Positives = 56/73 (76%)

Query:    19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFG 78
             + LL + G  ++ QN++AFS+++L++ L+Y+VA+A+KRI VI VSL+ L NPVT TNV G
Sbjct:   234 LMLLIISGFCNFAQNVIAFSILNLISPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLG 293

Query:    79 MMLAICGVLAYNK 91
             MM AI GV  YNK
Sbjct:   294 MMTAILGVFLYNK 306

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2142403 Slc35e1 "solute carrier family 35, member E1" [Mus musculus (taxid:10090)]

 Score = 210 (79.0 bits), Expect = 1.5e-16, P = 1.5e-16
 Identities = 40/73 (54%), Positives = 56/73 (76%)

Query:    19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFG 78
             + LL + G  ++ QN++AFS+++L++ L+Y+VA+A+KRI VI VSL+ L NPVT TNV G
Sbjct:   262 LLLLAVSGFCNFAQNVIAFSILNLISPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLG 321

Query:    79 MMLAICGVLAYNK 91
             MM AI GV  YNK
Sbjct:   322 MMTAILGVFLYNK 334

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RIR4 SLC35E1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 210 (79.0 bits), Expect = 1.5e-16, P = 1.5e-16
 Identities = 40/73 (54%), Positives = 56/73 (76%)

Query:    19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFG 78
             + LL + G  ++ QN++AFS+++L++ L+Y+VA+A+KRI VI VSL+ L NPVT TNV G
Sbjct:   262 LLLLAVSGFCNFAQNVIAFSILNLISPLSYSVANATKRIMVITVSLIMLQNPVTSTNVLG 321

Query:    79 MMLAICGVLAYNK 91
             MM AI GV  YNK
Sbjct:   322 MMTAILGVFLYNK 334

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1S9W2 SLC35E1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 210 (79.0 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 40/73 (54%), Positives = 56/73 (76%)

Query:    19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFG 78
             + LL + G  ++ QN++AFS+++L++ L+Y+VA+A+KRI VI VSL+ L NPVT TNV G
Sbjct:   264 LLLLAVSGFCNFAQNVIAFSILNLISPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLG 323

Query:    79 MMLAICGVLAYNK 91
             MM AI GV  YNK
Sbjct:   324 MMTAILGVFLYNK 336

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-2033 slc35e1 "solute carrier family 35, member E1" [Danio rerio (taxid:7955)]

 Score = 207 (77.9 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 42/78 (53%), Positives = 58/78 (74%)

Query:    14 SSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTG 73
             S T  + LL + G  ++ QN++AFSV++LV+ L+YAVA+A+KRI VI++SLL L NPV  
Sbjct:   227 SWTGTLMLLLISGFCNFAQNMIAFSVLNLVSPLSYAVANATKRIMVISISLLMLRNPVNT 286

Query:    74 TNVFGMMLAICGVLAYNK 91
             +N+ GMM AI GV  YNK
Sbjct:   287 SNIIGMMTAILGVFLYNK 304

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0C6B1	S35E1_RAT	No assigned EC number	0.5616	0.5104	0.1784	yes	N/A
Q8CD26	S35E1_MOUSE	No assigned EC number	0.5479	0.5104	0.1784	yes	N/A
Q96K37	S35E1_HUMAN	No assigned EC number	0.5616	0.5104	0.1780	yes	N/A
Q9VR50	S35E1_DROME	No assigned EC number	0.6739	0.6363	0.2439	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	143
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	2e-19
PTZ00343	350	PTZ00343, PTZ00343, triose or hexose phosphate/pho	1e-11
TIGR00817	302	TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate	2e-10

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score = 78.8 bits (195), Expect = 2e-19
 Identities = 30/86 (34%), Positives = 52/86 (60%)

Query: 5   HGNSQFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSL 64
                F    +++ + LL L G+L++L N+ AF ++   + LT +VA   KR+ VI +S+
Sbjct: 63  FILKFFGDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVLSV 122

Query: 65  LALGNPVTGTNVFGMMLAICGVLAYN 90
           +  G+PVT  N+ G+ +AI GV+ Y+
Sbjct: 123 IIFGDPVTFLNILGLAIAILGVVLYS 148

This family includes transporters with a specificity for triose phosphate. Length = 149

>gnl|CDD|240371 PTZ00343, PTZ00343, triose or hexose phosphate/phosphate translocator; Provisional

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 25/74 (33%), Positives = 39/74 (52%)

Query: 16  TKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTN 75
             +IF +   G+  +L N +AF  +  V  +T+AVA+  KR+ +I  S++     VT   
Sbjct: 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLG 332

Query: 76  VFGMMLAICGVLAY 89
             GM +AI G L Y
Sbjct: 333 YLGMAVAILGALLY 346

Length = 350

>gnl|CDD|129898 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate translocator

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 33  NILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92
             +AF ++  V+ LT++V +  KR+ VI VS+L  G  ++   VFG  +AI GV  Y++V
Sbjct: 235 QQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV 294

The 6-8 TMS Triose-phosphate Transporter (TPT) Family (TC 2.A.7.9)Functionally characterized members of the TPT family are derived from the inner envelope membranes of chloroplasts and nongreen plastids of plants. However,homologues are also present in yeast. Saccharomyces cerevisiae has three functionally uncharacterized TPT paralogues encoded within its genome. Under normal physiologicalconditions, chloroplast TPTs mediate a strict antiport of substrates, frequently exchanging an organic three carbon compound phosphate ester for inorganic phosphate (Pi).Normally, a triose-phosphate, 3-phosphoglycerate, or another phosphorylated C3 compound made in the chloroplast during photosynthesis, exits the organelle into thecytoplasm of the plant cell in exchange for Pi. However, experiments with reconstituted translocator in artificial membranes indicate that transport can also occur by achannel-like uniport mechanism with up to 10-fold higher transport rates. Channel opening may be induced by a membrane potential of large magnitude and/or by high substrateconcentrations. Nongreen plastid and chloroplast carriers, such as those from maize endosperm and root membranes, mediate transport of C3 compounds phosphorylated atcarbon atom 2, particularly phosphenolpyruvate, in exchange for Pi. These are the phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P has also been shown to be asubstrate of some plastid translocators (GPT). The three types of proteins (TPT, PPT and GPT) are divergent in sequence as well as substrate specificity, but their substratespecificities overlap [Hypothetical proteins, Conserved]. Length = 302

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG1441|consensus	316		99.76
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.72
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.45
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.3
KOG1442|consensus	347		99.27
KOG1444|consensus	314		99.26
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.21
KOG1580|consensus	337		98.99
KOG1581|consensus	327		98.92
KOG1583|consensus	330		98.92
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.89
KOG1443|consensus	349		98.84
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.36
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.05
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.0
PRK11689	295	aromatic amino acid exporter; Provisional	97.86
PLN00411	358	nodulin MtN21 family protein; Provisional	97.84
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.82
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.75
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.41
PRK15430	296	putative chloramphenical resistance permease RarD;	97.41
KOG1582|consensus	367		97.38
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.35
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.32
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.25
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.23
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.23
PRK15430	296	putative chloramphenical resistance permease RarD;	97.21
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.2
PLN00411	358	nodulin MtN21 family protein; Provisional	97.19
COG2510	140	Predicted membrane protein [Function unknown]	97.18
PRK11272	292	putative DMT superfamily transporter inner membran	97.13
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.09
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.05
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	96.82
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.73
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.71
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.63
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.62
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.56
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.48
PRK11431	105	multidrug efflux system protein; Provisional	96.46
KOG2234|consensus	345		96.28
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.28
COG2076	106	EmrE Membrane transporters of cations and cationic	96.23
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	95.91
PRK11689	295	aromatic amino acid exporter; Provisional	95.73
COG0697	292	RhaT Permeases of the drug/metabolite transporter	95.47
KOG2234|consensus	345		95.41
PRK11272	292	putative DMT superfamily transporter inner membran	95.08
KOG3912|consensus	372		94.8
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	94.76
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	94.24
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	92.65
COG2962	293	RarD Predicted permeases [General function predict	92.57
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	92.21
KOG2765|consensus	416		92.14
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	89.16
COG2962	293	RarD Predicted permeases [General function predict	89.08
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	87.46
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	87.43
KOG4510|consensus	346		86.18
KOG3912|consensus	372		84.86
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	83.1
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	82.96
KOG2766|consensus	336		82.9
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	81.56

>KOG1441|consensus

Probab=99.76  E-value=4.9e-19  Score=149.08  Aligned_cols=86  Identities=38%  Similarity=0.519  Sum_probs=78.9

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326         13 DSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV   92 (143)
Q Consensus        13 ~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~   92 (143)
                      +++...+.+++.+ +++|++|+++|++|++||||||+|+|++|++++++.|+++|++|+|+.|.+|++++++|+++|+++
T Consensus       230 ~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~  308 (316)
T KOG1441|consen  230 PWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRA  308 (316)
T ss_pred             ccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence            5555666566666 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccch
Q psy13326         93 STYTGCA   99 (143)
Q Consensus        93 k~~~~~~   99 (143)
                      |.+++++
T Consensus       309 k~~~~~~  315 (316)
T KOG1441|consen  309 KLKEKKG  315 (316)
T ss_pred             hhhhhcc
Confidence            9988754

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.72  E-value=1.2e-17  Score=123.22  Aligned_cols=77  Identities=40%  Similarity=0.745  Sum_probs=74.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhh
Q psy13326         15 STKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNK   91 (143)
Q Consensus        15 ~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~   91 (143)
                      ++..+..++++|++++++|+++|++++++||+|++|+|++|+++++++|+++|+|++|+.+++|++++++|+++|+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   77 DPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999986

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.45  E-value=2.4e-13  Score=114.87  Aligned_cols=77  Identities=32%  Similarity=0.486  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcc
Q psy13326         17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVS   93 (143)
Q Consensus        17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k   93 (143)
                      .++..++.+|++++++|.++|.+++++||+|++|++++|+++++++|+++|||++|+.+++|++++++|+++|++.|
T Consensus       274 ~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        274 IIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence            45557888999999999999999999999999999999999999999999999999999999999999999999875

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.30  E-value=7.7e-12  Score=103.13  Aligned_cols=83  Identities=18%  Similarity=0.404  Sum_probs=78.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhccc
Q psy13326         15 STKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVST   94 (143)
Q Consensus        15 ~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~   94 (143)
                      .+..+..+++.++++++.+...|.+++++||+|.++++++|+++++++|+++|++++++.+|+|++++++|+.+|++.|+
T Consensus       221 ~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~  300 (303)
T PF08449_consen  221 HPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKK  300 (303)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhc
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccc
Q psy13326         95 YTG   97 (143)
Q Consensus        95 ~~~   97 (143)
                      +++
T Consensus       301 k~~  303 (303)
T PF08449_consen  301 KKN  303 (303)
T ss_pred             cCC
Confidence            874

; GO: 0055085 transmembrane transport

>KOG1442|consensus

Probab=99.27  E-value=3.1e-13  Score=112.72  Aligned_cols=98  Identities=13%  Similarity=0.163  Sum_probs=88.8

Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326         11 SSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN   90 (143)
Q Consensus        11 ~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs   90 (143)
                      +..++.++|.++.++|+++|.+|+..++-|+.||||||+|.|+.|.+.+.++++.+++|..+.+.|.|-.+++.|...|+
T Consensus       247 ~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT  326 (347)
T KOG1442|consen  247 PHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYT  326 (347)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccchhhhccccccc
Q psy13326         91 KVSTYTGCARKTLTMAQGR  109 (143)
Q Consensus        91 ~~k~~~~~~~~k~~~~p~~  109 (143)
                      ++|..|++.+.+ +.+|++
T Consensus       327 ~vk~~em~~~~~-~~s~~~  344 (347)
T KOG1442|consen  327 LVKEHEMRKASA-QRSPAT  344 (347)
T ss_pred             HHHHHHHHhhcc-CCCccc
Confidence            999998865433 335655

>KOG1444|consensus

Probab=99.26  E-value=8.1e-12  Score=105.14  Aligned_cols=85  Identities=15%  Similarity=0.248  Sum_probs=75.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhcc-CCcccccchhhHHHHHHHHHHHhhcc
Q psy13326         15 STKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLAL-GNPVTGTNVFGMMLAICGVLAYNKVS   93 (143)
Q Consensus        15 ~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~if-g~~ls~~~~iG~~lal~G~~lYs~~k   93 (143)
                      ++.++..+++||+++|..|++.++|+..+||+|++++| +|..+...++.+++ +.|+++.+++|+.+.+.|..+|++.+
T Consensus       224 ~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~  302 (314)
T KOG1444|consen  224 DSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT  302 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence            36778999999999999999999999999999999999 77776666666665 56899999999999999999999999


Q ss_pred             ccccchh
Q psy13326         94 TYTGCAR  100 (143)
Q Consensus        94 ~~~~~~~  100 (143)
                      .++|+.+
T Consensus       303 ~~~k~~~  309 (314)
T KOG1444|consen  303 FRKKKQP  309 (314)
T ss_pred             hhhccCC
Confidence            8887654

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.21  E-value=3e-11  Score=98.89  Aligned_cols=71  Identities=32%  Similarity=0.507  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcccccc
Q psy13326         27 MLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTG   97 (143)
Q Consensus        27 ~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~~~   97 (143)
                      .+.++.|...|.+++++||+|.++.+.+|.++.+++|++++||++++.+++|.+++++|+++|+..|.+++
T Consensus       229 ~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~  299 (302)
T TIGR00817       229 GFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP  299 (302)
T ss_pred             HHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence            36777888999999999999999999999999999999999999999999999999999999998776544

specificities overlap.

>KOG1580|consensus

Probab=98.99  E-value=7e-10  Score=91.53  Aligned_cols=94  Identities=20%  Similarity=0.311  Sum_probs=82.4

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326         13 DSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV   92 (143)
Q Consensus        13 ~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~   92 (143)
                      +.-+..++.+.+-++++.+-+.+.|..+...+|||.||+.+.|+.++|++|+++|+||++..||+|..+++.|.......
T Consensus       235 ~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~  314 (337)
T KOG1580|consen  235 QRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVD  314 (337)
T ss_pred             HhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence            34466778888889999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             cccccchhhhcccc
Q psy13326         93 STYTGCARKTLTMA  106 (143)
Q Consensus        93 k~~~~~~~~k~~~~  106 (143)
                      .++.+.+..|.|..
T Consensus       315 GK~a~~t~akkp~~  328 (337)
T KOG1580|consen  315 GKKAPMTAAKKPLA  328 (337)
T ss_pred             CCcCccccccCCCc
Confidence            77666555555543

>KOG1581|consensus

Probab=98.92  E-value=1.2e-09  Score=92.07  Aligned_cols=87  Identities=15%  Similarity=0.306  Sum_probs=79.1

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326         13 DSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV   92 (143)
Q Consensus        13 ~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~   92 (143)
                      ...++++..+++-++|+-.-+++.|..|++.+|||+.++.+.|++++|++|+++|++|++..||+|+.+++.|..+-.+.
T Consensus       235 ~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~  314 (327)
T KOG1581|consen  235 KEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILL  314 (327)
T ss_pred             HcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHH
Confidence            34578888888888888888889999999999999999999999999999999999999999999999999999998888


Q ss_pred             cccccch
Q psy13326         93 STYTGCA   99 (143)
Q Consensus        93 k~~~~~~   99 (143)
                      |.+++..
T Consensus       315 k~~~~~~  321 (327)
T KOG1581|consen  315 KKKKNQP  321 (327)
T ss_pred             HHhccCc
Confidence            8774433

>KOG1583|consensus

Probab=98.92  E-value=1.2e-09  Score=91.33  Aligned_cols=82  Identities=16%  Similarity=0.231  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcccc
Q psy13326         16 TKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTY   95 (143)
Q Consensus        16 ~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~   95 (143)
                      |..|++++.+++.++++--..|.+..++++||.+++-++|+.+++++|++.|+||+++..|+|.++++.|.++|+-...+
T Consensus       239 P~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~  318 (330)
T KOG1583|consen  239 PSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNH  318 (330)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             cc
Q psy13326         96 TG   97 (143)
Q Consensus        96 ~~   97 (143)
                      .|
T Consensus       319 ~~  320 (330)
T KOG1583|consen  319 PK  320 (330)
T ss_pred             cc
Confidence            66

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.89  E-value=1.5e-09  Score=88.87  Aligned_cols=86  Identities=15%  Similarity=0.237  Sum_probs=80.5

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhh
Q psy13326         12 SDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNK   91 (143)
Q Consensus        12 ~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~   91 (143)
                      ...++..+.+++++|+++++..+++-||+..||+.||+++|++.+.+..+.|.++|++|++.+.++.+.+.++..+.|++
T Consensus       217 nnl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYav  296 (309)
T COG5070         217 NNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV  296 (309)
T ss_pred             cCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence            44556678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q psy13326         92 VSTYTG   97 (143)
Q Consensus        92 ~k~~~~   97 (143)
                      +|.+++
T Consensus       297 aks~k~  302 (309)
T COG5070         297 AKSKKQ  302 (309)
T ss_pred             HHHHHH
Confidence            987754

>KOG1443|consensus

Probab=98.84  E-value=5.2e-09  Score=88.43  Aligned_cols=75  Identities=25%  Similarity=0.465  Sum_probs=72.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHH
Q psy13326         15 STKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAY   89 (143)
Q Consensus        15 ~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lY   89 (143)
                      ..+....+.+.|.++|++-.++|.++.+||.+|.+++|..|+++++++++.+.++.++..||+|..+++.|+.+|
T Consensus       239 ~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  239 ILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            467788899999999999999999999999999999999999999999999999999999999999999999999

>TIGR00803 nst UDP-galactose transporter

Probab=98.36  E-value=1.7e-07  Score=73.75  Aligned_cols=74  Identities=16%  Similarity=0.133  Sum_probs=61.6

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHH
Q psy13326         12 SDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAY   89 (143)
Q Consensus        12 ~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lY   89 (143)
                      .+++...+..++.+++    ..++..++++..++++.+++.++++++++++|+++||+++++.+++|..+++.|+++|
T Consensus       149 ~~~~~~~~~~~~~~a~----~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       149 IGYPTAVWIVGLLNVG----GGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             cCCchHHHHHHHHHHh----cCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            3444555544444333    3345889999999999999999999999999999999999999999999999999887

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.05  E-value=1.1e-05  Score=68.82  Aligned_cols=89  Identities=17%  Similarity=0.231  Sum_probs=75.8

Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326         11 SSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN   90 (143)
Q Consensus        11 ~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs   90 (143)
                      .++|+.....+++.-+++-|+.....-.++..+||+..++.--.-....+++++++|++++++.-++|.+++++|.+.|+
T Consensus       225 ~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~  304 (334)
T PF06027_consen  225 SIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN  304 (334)
T ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence            35677777777777777777777777789999999999998777788899999999999999999999999999999999


Q ss_pred             hccccccch
Q psy13326         91 KVSTYTGCA   99 (143)
Q Consensus        91 ~~k~~~~~~   99 (143)
                      ....++.++
T Consensus       305 ~~~~~~~~~  313 (334)
T PF06027_consen  305 LAESPEEEA  313 (334)
T ss_pred             ccCCccccc
Confidence            887765544

Some of the sequences in this family are annotated as putative membrane proteins.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.00  E-value=2.1e-05  Score=63.99  Aligned_cols=82  Identities=26%  Similarity=0.346  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcccc
Q psy13326         16 TKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTY   95 (143)
Q Consensus        16 ~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~   95 (143)
                      ++-.+.+++.+++..++|...|..+....|.|++|...+|-+.+-++++++++.+++..||+++.+.++|+.+.......
T Consensus        14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999997776665


Q ss_pred             cc
Q psy13326         96 TG   97 (143)
Q Consensus        96 ~~   97 (143)
                      ..
T Consensus        94 ~~   95 (244)
T PF04142_consen   94 SS   95 (244)
T ss_pred             cc
Confidence            53

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.86  E-value=8.5e-05  Score=60.99  Aligned_cols=79  Identities=18%  Similarity=0.015  Sum_probs=66.7

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhh
Q psy13326         13 DSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNK   91 (143)
Q Consensus        13 ~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~   91 (143)
                      +.+...+..++..|+...+-.+.-+..+++.+|...++...+.-++.++++++++||++++.+++|.+++++|+++-..
T Consensus       209 ~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        209 VFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            3444555556666666666667778999999999999999999999999999999999999999999999999877644

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.84  E-value=0.0001  Score=63.05  Aligned_cols=64  Identities=11%  Similarity=0.066  Sum_probs=57.7

Q ss_pred             HHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcccccc
Q psy13326         34 ILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTG   97 (143)
Q Consensus        34 ~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~~~   97 (143)
                      ..-++++++.+|...++...+--++.+++|++++||++++.+++|.+++++|+++-++.+.+|.
T Consensus       271 ~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~  334 (358)
T PLN00411        271 VIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEE  334 (358)
T ss_pred             HHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            3456799999999999999999999999999999999999999999999999999876655543

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.82  E-value=0.00012  Score=60.15  Aligned_cols=66  Identities=11%  Similarity=0.112  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcccc
Q psy13326         30 WLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTY   95 (143)
Q Consensus        30 f~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~   95 (143)
                      .+....-+..+++.+|...++...+--++.+++|++++||++++.+++|.+++++|.+.+.....+
T Consensus       220 ~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        220 ALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            334445578899999999999999999999999999999999999999999999999999866544

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.75  E-value=8.7e-05  Score=51.46  Aligned_cols=78  Identities=21%  Similarity=0.348  Sum_probs=66.3

Q ss_pred             CCcHHHHHHHHHHHHH-HHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326         13 DSSTKVIFLLCLDGML-SWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN   90 (143)
Q Consensus        13 ~~~~~~~~~l~lsg~~-af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs   90 (143)
                      ..+.+.+..++..|++ ..+.+...+..++++++-..++...+--++..++++++++|++++.+++|+.++++|+++-.
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   47 NLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             CCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3444555555555655 57778888999999999999999999999999999999999999999999999999998754

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.41  E-value=0.00088  Score=54.81  Aligned_cols=77  Identities=17%  Similarity=0.168  Sum_probs=69.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHH
Q psy13326         13 DSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAY   89 (143)
Q Consensus        13 ~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lY   89 (143)
                      ..+.+-+..++..|++..+.+...+..++.+|+-..+++..+--+++.+++.++++|+++..+++|+.++++|+++-
T Consensus        59 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        59 KISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            34466777888888888888899999999999999999999999999999999999999999999999999999764

specificities overlap.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.41  E-value=0.00084  Score=55.13  Aligned_cols=77  Identities=9%  Similarity=0.105  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhccccc
Q psy13326         20 FLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYT   96 (143)
Q Consensus        20 ~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~~   96 (143)
                      .+++..|+....-...-+..+++.+|-+.++...+.-++.+++|++++||++++.+++|++++++|+.+........
T Consensus       214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~~  290 (296)
T PRK15430        214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYT  290 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444454455556678889999999999999999999999999999999999999999999988888776554443

>KOG1582|consensus

Probab=97.38  E-value=0.00065  Score=57.51  Aligned_cols=82  Identities=16%  Similarity=0.288  Sum_probs=73.2

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhh
Q psy13326         12 SDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNK   91 (143)
Q Consensus        12 ~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~   91 (143)
                      .+.+.+...+.++-++.+|+-..+...+|+..+|++-..+.+.|+.++|++|+++|..|+|.+-.-|-.+++.|+++--+
T Consensus       253 aehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~y  332 (367)
T KOG1582|consen  253 AEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMY  332 (367)
T ss_pred             HhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcc
Confidence            45566778888888888888888999999999999999999999999999999999999999999999999999998655


Q ss_pred             cc
Q psy13326         92 VS   93 (143)
Q Consensus        92 ~k   93 (143)
                      -|
T Consensus       333 sk  334 (367)
T KOG1582|consen  333 SK  334 (367)
T ss_pred             cC
Confidence            55

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.35  E-value=0.0011  Score=52.40  Aligned_cols=73  Identities=21%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             cHHHHHHHHHHHHHH-HHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHH
Q psy13326         15 STKVIFLLCLDGMLS-WLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVL   87 (143)
Q Consensus        15 ~~~~~~~l~lsg~~a-f~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~   87 (143)
                      +...+..++..|+++ .+....-+..+++.++-+.++...+.-++.+++++++++|++++.+++|.++.+.|++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       187 LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            344454455444443 4555567889999999999999999999999999999999999999999999999863

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.32  E-value=0.0014  Score=53.83  Aligned_cols=81  Identities=15%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHH-HHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhh
Q psy13326         13 DSSTKVIFLLCLDGMLSWLQNIL-AFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNK   91 (143)
Q Consensus        13 ~~~~~~~~~l~lsg~~af~~N~s-~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~   91 (143)
                      +.+...+..++..|+++-...+. -+..+++.+|.+.++...+--++.+++|++++||++++.+++|.+++++|+++=.+
T Consensus       208 ~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~  287 (299)
T PRK11453        208 TIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVF  287 (299)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhc
Confidence            34455566666666555444433 34678899999999999999999999999999999999999999999999987554


Q ss_pred             cc
Q psy13326         92 VS   93 (143)
Q Consensus        92 ~k   93 (143)
                      .+
T Consensus       288 ~~  289 (299)
T PRK11453        288 GL  289 (299)
T ss_pred             ch
Confidence            44

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.25  E-value=0.0019  Score=46.00  Aligned_cols=74  Identities=20%  Similarity=0.307  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcc
Q psy13326         19 IFLLCLDGMLSW-LQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVS   93 (143)
Q Consensus        19 ~~~l~lsg~~af-~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k   93 (143)
                      +.++++.|++.. ..+...++-++..++ ..+++-.+--++..++|.++|+|++++.+++|+.++++|+++=.+..
T Consensus        34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   34 WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            334555566555 555566666666665 55577778888999999999999999999999999999998855443

>TIGR00688 rarD rarD protein

Probab=97.23  E-value=0.0014  Score=52.23  Aligned_cols=71  Identities=18%  Similarity=0.244  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326         18 VIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLA   88 (143)
Q Consensus        18 ~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~l   88 (143)
                      .+..+.+.|++..+.+.+-++.++.+++-+-+++...--+.+.+++.++++|+++..+++|++++++|+.+
T Consensus        69 ~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~l  139 (256)
T TIGR00688        69 LILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVIS  139 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            34567788888888888889999999999999999999999999999999999999999999999999874

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.23  E-value=0.0014  Score=51.71  Aligned_cols=72  Identities=15%  Similarity=0.104  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326         19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN   90 (143)
Q Consensus        19 ~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs   90 (143)
                      ..+++..+++..+.+...|.-++.+++-+-+++-.+.-+++.+++.++++|++++.+++|++++++|+++..
T Consensus        47 ~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~  118 (260)
T TIGR00950        47 LRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL  118 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence            445566666667888888999999998888999999999999999999999999999999999999998865

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.21  E-value=0.0018  Score=53.12  Aligned_cols=73  Identities=22%  Similarity=0.315  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHH
Q psy13326         17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAY   89 (143)
Q Consensus        17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lY   89 (143)
                      +.+..+++.++.....+.+-|+-++.+++..-+++..+--+++.++++++++|+++..+++|++++++|+.+-
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li  143 (296)
T PRK15430         71 QKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQ  143 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence            3344455666777778889999999999999999999999999999999999999999999999999998764

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.20  E-value=0.002  Score=46.62  Aligned_cols=42  Identities=19%  Similarity=0.369  Sum_probs=36.8

Q ss_pred             hhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326         46 LTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLA   88 (143)
Q Consensus        46 LT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~l   88 (143)
                      +.|.+.. +--+.+.++|+++|+|++++.+++|+++.++|+++
T Consensus        65 ~Ay~~~~-l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~  106 (111)
T PRK15051         65 IAYPMLS-LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVI  106 (111)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            3566665 77788899999999999999999999999999876

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.19  E-value=0.0015  Score=55.90  Aligned_cols=75  Identities=13%  Similarity=0.202  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhc------cCCcccccchhhHHHHHHHHHHH
Q psy13326         16 TKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLA------LGNPVTGTNVFGMMLAICGVLAY   89 (143)
Q Consensus        16 ~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~i------fg~~ls~~~~iG~~lal~G~~lY   89 (143)
                      .+.+..+++.|+++++++...+.-++.+||-.-+++..+--+++.++++++      ++|++++.+++|++++++|+++=
T Consensus        75 ~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll  154 (358)
T PLN00411         75 VSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVV  154 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHH
Confidence            455677777888887788889999999999999999999999999999999      69999999999999999999864


Q ss_pred             h
Q psy13326         90 N   90 (143)
Q Consensus        90 s   90 (143)
                      .
T Consensus       155 ~  155 (358)
T PLN00411        155 I  155 (358)
T ss_pred             H
Confidence            4

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.18  E-value=0.00036  Score=52.77  Aligned_cols=86  Identities=20%  Similarity=0.301  Sum_probs=61.0

Q ss_pred             ccCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHH
Q psy13326          4 AHGNSQFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAI   83 (143)
Q Consensus         4 a~g~~~~~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal   83 (143)
                      +.|+..-..+.+++.|.++++||+..-+--++-|..++.=-+=-..=+--.--++.+++|+++++|.+|..+++|+.+..
T Consensus        52 ~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~  131 (140)
T COG2510          52 VTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIV  131 (140)
T ss_pred             hcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            35666655667889999999999877776666666665321111111111223567889999999999999999999999


Q ss_pred             HHHHHH
Q psy13326         84 CGVLAY   89 (143)
Q Consensus        84 ~G~~lY   89 (143)
                      +|..+-
T Consensus       132 ~Gailv  137 (140)
T COG2510         132 IGAILV  137 (140)
T ss_pred             hCeeeE
Confidence            998753

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.13  E-value=0.0034  Score=51.33  Aligned_cols=77  Identities=6%  Similarity=-0.013  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326         16 TKVIFLLCLDGML-SWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV   92 (143)
Q Consensus        16 ~~~~~~l~lsg~~-af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~   92 (143)
                      ...+..++.-+++ ...-...-+..+++.++-+.++...+.-+...++++++++|++++.+++|.++.+.|+++-+..
T Consensus       209 ~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        209 LSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444 3444456777889999999999999999999999999999999999999999999999987654

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.09  E-value=0.0023  Score=52.00  Aligned_cols=74  Identities=14%  Similarity=0.165  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326         17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN   90 (143)
Q Consensus        17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs   90 (143)
                      ..+..+++.++....+..+.+...+..++-.-++.....-+++.++++++++|++++.+++|++++++|+++=.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~  134 (281)
T TIGR03340        61 TFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG  134 (281)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            34556777888888888888888888888888888888889999999999999999999999999999998643

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.05  E-value=0.0032  Score=53.36  Aligned_cols=75  Identities=16%  Similarity=0.123  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326         16 TKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN   90 (143)
Q Consensus        16 ~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs   90 (143)
                      ...+..++.-|++++..+...+..++.+++-..+++-.+--+++.+++.++++|++++.+++|++++++|+++=.
T Consensus       111 ~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        111 KLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            446778888888888888888888999999999999999999999999999999999999999999999998743

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=96.82  E-value=0.0026  Score=51.69  Aligned_cols=71  Identities=14%  Similarity=0.225  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326         18 VIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLA   88 (143)
Q Consensus        18 ~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~l   88 (143)
                      .+..+...++...+-...-+..+++.++-..+....+--++.+++|++++||++++.+++|.+++++|+++
T Consensus       210 ~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       210 ILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            34445666666666666777888888887777777777789999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.73  E-value=0.012  Score=46.18  Aligned_cols=79  Identities=23%  Similarity=0.330  Sum_probs=65.8

Q ss_pred             CcHHHHHHHHHHHHHHHH-HHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326         14 SSTKVIFLLCLDGMLSWL-QNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV   92 (143)
Q Consensus        14 ~~~~~~~~l~lsg~~af~-~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~   92 (143)
                      .+...+..++..|++... .-..-+..++..++...++...+.-+..+++++++++|+++..+++|.++.+.|+.+....
T Consensus       209 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         209 ILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            344556666666666653 5556678899999999999998888888999999999999999999999999999998876

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.71  E-value=0.0054  Score=50.57  Aligned_cols=80  Identities=19%  Similarity=0.282  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhccccccc
Q psy13326         19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTGC   98 (143)
Q Consensus        19 ~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~~~~   98 (143)
                      +...+.-+++.++-+..+...++..|-=|+.+.-..|-+++.++++++++++.++.++++.++..+|++.....+.++.+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~  143 (303)
T PF08449_consen   64 LKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS  143 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence            34445557788888888999999999999999999999999999999999999999999999999999999988766553

; GO: 0055085 transmembrane transport

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=96.63  E-value=0.012  Score=43.87  Aligned_cols=68  Identities=18%  Similarity=0.222  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhccChh--hHhhhhhhhhHHHhhhhh--hccCCcccccchhhHHHHHHHHHHHhh
Q psy13326         23 CLDGMLSWLQNILAFSVMSLVTSL--TYAVASASKRIFVIAVSL--LALGNPVTGTNVFGMMLAICGVLAYNK   91 (143)
Q Consensus        23 ~lsg~~af~~N~s~f~~i~~tSaL--T~sV~g~lK~i~~ivls~--~ifg~~ls~~~~iG~~lal~G~~lYs~   91 (143)
                      +..|+..+...+......-+.-|+  .+.+.+.. -+.+.+.++  ++|+|++|+.+++|+++.++|+++-+.
T Consensus        51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~-~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLS-YALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            445555555544433333333343  33333222 234445555  389999999999999999999999664

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.62  E-value=0.014  Score=42.47  Aligned_cols=48  Identities=27%  Similarity=0.403  Sum_probs=42.4

Q ss_pred             hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326         45 SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV   92 (143)
Q Consensus        45 aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~   92 (143)
                      .+.|++-..+-.+.+.++|+++|+|++++.+++|+++.++|+.+-+..
T Consensus        57 ~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         57 GIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            357888777888899999999999999999999999999999986543

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.56  E-value=0.012  Score=43.61  Aligned_cols=48  Identities=15%  Similarity=0.314  Sum_probs=42.2

Q ss_pred             hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326         45 SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV   92 (143)
Q Consensus        45 aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~   92 (143)
                      .+.|++-..+-.+.+.++|+++|+|++++.+++|+++.++|+..=+..
T Consensus        57 siAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         57 GVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            457888777888899999999999999999999999999999886443

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.48  E-value=0.017  Score=42.08  Aligned_cols=45  Identities=18%  Similarity=0.338  Sum_probs=41.6

Q ss_pred             hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHH
Q psy13326         45 SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAY   89 (143)
Q Consensus        45 aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lY   89 (143)
                      .+.|++-..+-.+.+.++|+++|+|++++.+++|+++.+.|+..=
T Consensus        62 gvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         62 SVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            458999999999999999999999999999999999999999873

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.46  E-value=0.02  Score=41.39  Aligned_cols=46  Identities=15%  Similarity=0.350  Sum_probs=42.6

Q ss_pred             hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326         45 SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN   90 (143)
Q Consensus        45 aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs   90 (143)
                      .+.|++-..+-.+.+.++|+++|+|++++.+++|+++.++|+..=+
T Consensus        56 gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         56 GTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            5689999999999999999999999999999999999999998743

>KOG2234|consensus

Probab=96.28  E-value=0.013  Score=50.44  Aligned_cols=73  Identities=21%  Similarity=0.263  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326         18 VIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN   90 (143)
Q Consensus        18 ~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs   90 (143)
                      -...+...+++..++|-..|..+...+|.||+|...+|-.-+-++++++.+++++..||.-.++.++|+.+=+
T Consensus        91 ~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen   91 ETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            4567788899999999999999999999999999999999999999999999999999999999999999876

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.28  E-value=0.0096  Score=50.94  Aligned_cols=74  Identities=16%  Similarity=0.226  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcc
Q psy13326         19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVS   93 (143)
Q Consensus        19 ~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k   93 (143)
                      |.++++ |++=..-|+......+.||-.+.++....--++++++|+++++++.++.+++|+.++++|+.+=....
T Consensus        80 w~y~ll-a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD  153 (334)
T PF06027_consen   80 WKYFLL-ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD  153 (334)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence            444444 78889999999999999999999999999999999999999999999999999999999998755443

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.23  E-value=0.024  Score=41.33  Aligned_cols=48  Identities=19%  Similarity=0.350  Sum_probs=43.4

Q ss_pred             hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326         45 SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV   92 (143)
Q Consensus        45 aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~   92 (143)
                      .+.|++-+-.=.+.+.++|+++|+|++++.+++|+++.++|+..-+..
T Consensus        57 gvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          57 GVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            458999999999999999999999999999999999999999875543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=95.91  E-value=0.042  Score=45.33  Aligned_cols=76  Identities=21%  Similarity=0.170  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-ccChhhHhhhhhhhhHHHhhhhhhccCCcccccch----hhHHHHHHHHHHHh
Q psy13326         16 TKVIFLLCLDGMLSWLQNILAFSVMS-LVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNV----FGMMLAICGVLAYN   90 (143)
Q Consensus        16 ~~~~~~l~lsg~~af~~N~s~f~~i~-~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~----iG~~lal~G~~lYs   90 (143)
                      .+..+..++.|++....+..-+.-.+ ...+-+.++...+--++.++.++++++|+.++.|+    +|+++.+.|+.+=.
T Consensus       208 ~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       208 KYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            34444455588886555655556667 89999999999999999999999999999999999    99999999998744


Q ss_pred             h
Q psy13326         91 K   91 (143)
Q Consensus        91 ~   91 (143)
                      .
T Consensus       288 ~  288 (290)
T TIGR00776       288 I  288 (290)
T ss_pred             c
Confidence            3

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=95.73  E-value=0.04  Score=45.18  Aligned_cols=69  Identities=17%  Similarity=0.126  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH----hccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326         22 LCLDGMLSWLQNILAFSVM----SLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN   90 (143)
Q Consensus        22 l~lsg~~af~~N~s~f~~i----~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs   90 (143)
                      +++.++....++...|.-+    +.+++..-+++..+--+++.++++++++|++++.+++|++++++|+++-.
T Consensus        64 ~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~  136 (295)
T PRK11689         64 LLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL  136 (295)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence            3444544444554444433    34566666788888888999999999999999999999999999997743

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=95.47  E-value=0.073  Score=41.69  Aligned_cols=77  Identities=21%  Similarity=0.267  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhh-hccCCcccccchhhHHHHHHHHHHHhhcccc
Q psy13326         19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSL-LALGNPVTGTNVFGMMLAICGVLAYNKVSTY   95 (143)
Q Consensus        19 ~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~-~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~   95 (143)
                      +..++..++........-|..+..+++-..++....--+.+.+++. ++++|++++.+++|+.+.++|+++-......
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          70 LLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            3455555555566666667778889999999999999999999996 6679999999999999999999986655444

>KOG2234|consensus

Probab=95.41  E-value=0.056  Score=46.66  Aligned_cols=86  Identities=16%  Similarity=0.193  Sum_probs=73.1

Q ss_pred             CCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHH
Q psy13326          7 NSQFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGV   86 (143)
Q Consensus         7 ~~~~~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~   86 (143)
                      +.+..++++...|..++.+++-+.+..    ++++...-+...-+..+--+++.++|+.+|+-++|..=.+|+.+++..+
T Consensus       242 ~~gff~G~s~~vw~vVl~~a~gGLlvs----~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si  317 (345)
T KOG2234|consen  242 EYGFFYGYSSIVWLVVLLNAVGGLLVS----LVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSI  317 (345)
T ss_pred             cCCccccccHHHHHHHHHHhccchhHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence            344567888899999999988876665    4678888888888888888999999999999999999999999999999


Q ss_pred             HHHhhccccc
Q psy13326         87 LAYNKVSTYT   96 (143)
Q Consensus        87 ~lYs~~k~~~   96 (143)
                      .+|+....++
T Consensus       318 ~lY~~~P~~~  327 (345)
T KOG2234|consen  318 FLYSLYPARD  327 (345)
T ss_pred             HHhhcCCccc
Confidence            9999666655

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=95.08  E-value=0.14  Score=41.88  Aligned_cols=73  Identities=22%  Similarity=0.263  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHH-hccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326         17 KVIFLLCLDGMLSW-LQNILAFSVM-SLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN   90 (143)
Q Consensus        17 ~~~~~l~lsg~~af-~~N~s~f~~i-~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs   90 (143)
                      +.+...++.|++.+ ..+...+... ..+++-.-++.-.+--+++.+++.+ ++|+++..+++|+.++++|+++-.
T Consensus        66 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~  140 (292)
T PRK11272         66 RQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN  140 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence            34555566666553 3344445555 6666656677777778888888875 799999999999999999987754

>KOG3912|consensus

Probab=94.80  E-value=0.02  Score=48.88  Aligned_cols=63  Identities=14%  Similarity=0.246  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326         30 WLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV   92 (143)
Q Consensus        30 f~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~   92 (143)
                      .+.|++...+.+..|+.|-.++-.+|..++=++++..+-|.+...|+.|.++.+.|+++|+-.
T Consensus       273 AffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i  335 (372)
T KOG3912|consen  273 AFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI  335 (372)
T ss_pred             eeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999999999999999999999999999999854

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=94.76  E-value=0.085  Score=36.74  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=24.4

Q ss_pred             hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHH
Q psy13326         45 SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLA   82 (143)
Q Consensus        45 aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~la   82 (143)
                      ++.|.+-..+-.+.+.++|+++|+|++|+.+++|+++.
T Consensus        56 ~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   56 SVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            34778877788899999999999999999999999863

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=94.24  E-value=0.22  Score=40.80  Aligned_cols=55  Identities=22%  Similarity=0.404  Sum_probs=42.2

Q ss_pred             HHHHHhcc-ChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326         36 AFSVMSLV-TSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN   90 (143)
Q Consensus        36 ~f~~i~~t-SaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs   90 (143)
                      .|..+..+ ++-.-+++..+--+++.++++++++|+++..+++|++++++|+++=.
T Consensus        76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~  131 (299)
T PRK11453         76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI  131 (299)
T ss_pred             HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence            34445553 33344556666678899999999999999999999999999987644

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=92.65  E-value=0.3  Score=40.29  Aligned_cols=78  Identities=15%  Similarity=0.213  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccChhhH-hhhhhhhhHHHhhhhhhccCCcccccc----hhhHHHHHHHHHHHh
Q psy13326         16 TKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTY-AVASASKRIFVIAVSLLALGNPVTGTN----VFGMMLAICGVLAYN   90 (143)
Q Consensus        16 ~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~-sV~g~lK~i~~ivls~~ifg~~ls~~~----~iG~~lal~G~~lYs   90 (143)
                      ...+..=+++|++=-..|++-|..++.++.=+- .+...+--+...+.+.++|+|+.+..+    ++|++++++|+++..
T Consensus        56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~  135 (290)
T TIGR00776        56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS  135 (290)
T ss_pred             cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence            455555666666666667777777776543322 222334445777899999999999999    999999999999976


Q ss_pred             hcc
Q psy13326         91 KVS   93 (143)
Q Consensus        91 ~~k   93 (143)
                      ..+
T Consensus       136 ~~~  138 (290)
T TIGR00776       136 RSK  138 (290)
T ss_pred             ecc
Confidence            654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=92.57  E-value=0.61  Score=39.50  Aligned_cols=84  Identities=15%  Similarity=0.302  Sum_probs=59.1

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhccChh-hHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326         14 SSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSL-TYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV   92 (143)
Q Consensus        14 ~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaL-T~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~   92 (143)
                      .....+.+++++|...-.= +..|..-.+-=|+ |..+..-.--....++++++|+|+++..+++..+..-.|.++|+..
T Consensus       206 ~~~~~~~LLv~aG~vTavp-L~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d  284 (293)
T COG2962         206 NANSLWLLLVLAGLVTAVP-LLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID  284 (293)
T ss_pred             CCchHHHHHHHhhHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3455666677777655322 2333333333233 5555556666788999999999999999999999999999999988


Q ss_pred             cccccc
Q psy13326         93 STYTGC   98 (143)
Q Consensus        93 k~~~~~   98 (143)
                      ..++++
T Consensus       285 ~l~~~r  290 (293)
T COG2962         285 GLYTAR  290 (293)
T ss_pred             HHHHHh
Confidence            776543

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=92.21  E-value=0.31  Score=39.67  Aligned_cols=69  Identities=20%  Similarity=0.233  Sum_probs=57.9

Q ss_pred             cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHH
Q psy13326          9 QFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMML   81 (143)
Q Consensus         9 ~~~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~l   81 (143)
                      +...+++...|..+++.++.+.+.    -.++++.+.+.-..+..+--+++.++++++|+.++|..-.+|.++
T Consensus       175 g~f~G~~~~~~~~i~~~a~gGllv----a~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  175 GFFHGYSWWVWIVIFLQAIGGLLV----AFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             CchhhcchHHHHHHHHHHHhhHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence            334567777888888777766654    458899999999999999999999999999999999999988765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2765|consensus

Probab=92.14  E-value=0.2  Score=44.09  Aligned_cols=81  Identities=12%  Similarity=0.179  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhccccc
Q psy13326         17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYT   96 (143)
Q Consensus        17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~~   96 (143)
                      ....+-+.-|.+=|+.|++.-..++.||.-..+++...-..+++.++.++-+|.+|+.+.++..+.++|+++-+..+.++
T Consensus       157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            34556677788999999999999999999999999999999999999999999999999999999999999877766655


Q ss_pred             c
Q psy13326         97 G   97 (143)
Q Consensus        97 ~   97 (143)
                      +
T Consensus       237 ~  237 (416)
T KOG2765|consen  237 N  237 (416)
T ss_pred             c
Confidence            3

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=89.16  E-value=1  Score=33.69  Aligned_cols=72  Identities=15%  Similarity=0.328  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHH-hhhhhh-ccC---CcccccchhhHHHHHHHHHH
Q psy13326         17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFV-IAVSLL-ALG---NPVTGTNVFGMMLAICGVLA   88 (143)
Q Consensus        17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~-ivls~~-ifg---~~ls~~~~iG~~lal~G~~l   88 (143)
                      ...++..+.|+++..+-.+....+.+.++.+..+....=+++. +++-.+ +|+   +++++.+++|+.+.++|+++
T Consensus        62 ~~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   62 SVPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             cCChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            3445666699999999999999999999988877776666544 444443 343   67999999999999999863

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=89.08  E-value=1.1  Score=38.03  Aligned_cols=73  Identities=19%  Similarity=0.180  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHH
Q psy13326         16 TKVIFLLCLDGMLSWLQNILAFSV-MSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAY   89 (143)
Q Consensus        16 ~~~~~~l~lsg~~af~~N~s~f~~-i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lY   89 (143)
                      ++.+..+++++++- ..|...|.- .+.=..+--|.-=-..-.+.+++|.++++|.++..|++-+.++.+|+..-
T Consensus        69 p~~~~~~~l~a~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~  142 (293)
T COG2962          69 PKTLLMLALTALLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQ  142 (293)
T ss_pred             cHHHHHHHHHHHHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            45555555555543 345554432 33333444444445667788999999999999999999999999998653

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=87.46  E-value=2.8  Score=35.03  Aligned_cols=89  Identities=17%  Similarity=0.171  Sum_probs=56.1

Q ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHhhhhhhhhHHHhhhhhhccCCcccccc----hhhHHHHHH
Q psy13326         10 FSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVT-SLTYAVASASKRIFVIAVSLLALGNPVTGTN----VFGMMLAIC   84 (143)
Q Consensus        10 ~~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tS-aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~----~iG~~lal~   84 (143)
                      |..+.+...++.-+++|++=-+-|+..|.-.++.+ +.|+=+...+-=+...+.++++|||--+..+    .+++++.++
T Consensus        36 p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liii  115 (269)
T PF06800_consen   36 PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIII  115 (269)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Confidence            34444456777777777766555555555554433 2333344444456678899999999765443    447788889


Q ss_pred             HHHHHhhccccccc
Q psy13326         85 GVLAYNKVSTYTGC   98 (143)
Q Consensus        85 G~~lYs~~k~~~~~   98 (143)
                      |.++=++.++++.+
T Consensus       116 Gv~lts~~~~~~~~  129 (269)
T PF06800_consen  116 GVILTSYQDKKSDK  129 (269)
T ss_pred             HHHHhccccccccc
Confidence            99887766655543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=87.43  E-value=0.62  Score=38.57  Aligned_cols=30  Identities=10%  Similarity=0.163  Sum_probs=25.7

Q ss_pred             ccccchhhHHHHHHHHHHHhhccccccchh
Q psy13326         71 VTGTNVFGMMLAICGVLAYNKVSTYTGCAR  100 (143)
Q Consensus        71 ls~~~~iG~~lal~G~~lYs~~k~~~~~~~  100 (143)
                      -.++|++|++++++|..+|...|.++++.+
T Consensus       114 ~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~  143 (254)
T PF07857_consen  114 SPWLNYIGVALVLVSGIIFSFIKSEEKEPK  143 (254)
T ss_pred             hhHHHHHHHHHHHHHHHheeeecCCCCCcc
Confidence            357899999999999999999998876543

The region concerned is approximately 280 residues long.

>KOG4510|consensus

Probab=86.18  E-value=0.12  Score=43.82  Aligned_cols=69  Identities=20%  Similarity=0.353  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326         22 LCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN   90 (143)
Q Consensus        22 l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs   90 (143)
                      +++-|++++.--+..|+.....|----+|+.-.--++++++++++++||.|..+.+|..+++.|+.+-.
T Consensus       100 LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv  168 (346)
T KOG4510|consen  100 LILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV  168 (346)
T ss_pred             EEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence            445566665555556665555443333445555678999999999999999999999999999998743

>KOG3912|consensus

Probab=84.86  E-value=1.9  Score=37.07  Aligned_cols=64  Identities=17%  Similarity=0.272  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326         17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLA   88 (143)
Q Consensus        17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~l   88 (143)
                      ..+..++.+.++...+|        .|||-.+++.--.--|++-++|..+.+..++..+|+|+..+++|...
T Consensus        92 Pal~Di~gsslm~vgL~--------lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlvi  155 (372)
T KOG3912|consen   92 PALCDIAGSSLMYVGLN--------LTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVI  155 (372)
T ss_pred             hHHHHHhhhHHHHHHHH--------HhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhe
Confidence            33444455555554444        58888888876666777788888899999999999999999999865

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=83.10  E-value=4.4  Score=34.20  Aligned_cols=56  Identities=11%  Similarity=0.124  Sum_probs=50.9

Q ss_pred             HHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhh
Q psy13326         36 AFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNK   91 (143)
Q Consensus        36 ~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~   91 (143)
                      +...+.+.++=++++.-.+.-.+--+.|+++.+|.+|+.||.|+..++.+..--+.
T Consensus       227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l  282 (292)
T COG5006         227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL  282 (292)
T ss_pred             HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence            56778999999999999999999999999999999999999999999998875443

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=82.96  E-value=0.65  Score=34.10  Aligned_cols=61  Identities=21%  Similarity=0.315  Sum_probs=44.0

Q ss_pred             HHHHHHHHH----HHHHhccC-hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326         28 LSWLQNILA----FSVMSLVT-SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLA   88 (143)
Q Consensus        28 ~af~~N~s~----f~~i~~tS-aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~l   88 (143)
                      ..|++|++.    |++++++. +++.-+++.+--+++.+.++++.++..++..++|+.+++.|+.+
T Consensus        46 ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   46 IPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            345555543    23344332 33555677888889999999988888899999999999999753

Many members are annotated as potential transmembrane proteins.

>KOG2766|consensus

Probab=82.90  E-value=1.6  Score=37.07  Aligned_cols=81  Identities=10%  Similarity=0.155  Sum_probs=57.3

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhh
Q psy13326         12 SDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNK   91 (143)
Q Consensus        12 ~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~   91 (143)
                      .+|+.+...++. ..++-|+.=-..=.+++.+|+..+++.--.-+.-.+++  ..||-++.|+-++..+.+..|.+.|+-
T Consensus       223 l~w~~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~  299 (336)
T KOG2766|consen  223 LHWDSAIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST  299 (336)
T ss_pred             EeehHHHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence            345555555555 33444444334567788889988888766667666665  778888999999999999999999954


Q ss_pred             cccc
Q psy13326         92 VSTY   95 (143)
Q Consensus        92 ~k~~   95 (143)
                      ..++
T Consensus       300 re~~  303 (336)
T KOG2766|consen  300 REKD  303 (336)
T ss_pred             cccC
Confidence            4333

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=81.56  E-value=3.7  Score=34.42  Aligned_cols=56  Identities=21%  Similarity=0.304  Sum_probs=43.4

Q ss_pred             HHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326         35 LAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN   90 (143)
Q Consensus        35 s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs   90 (143)
                      ..|...+...+...+=.|.+--+...+++.++.+|+++...++|++++++|..+--
T Consensus        66 ~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   66 LNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             HHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            33444444444445556777788899999999999999999999999999997644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.52
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.14

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.52  E-value=0.00016  Score=53.33  Aligned_cols=57  Identities=25%  Similarity=0.341  Sum_probs=36.9

Q ss_pred             HHHHhccChh-hHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcc
Q psy13326         37 FSVMSLVTSL-TYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVS   93 (143)
Q Consensus        37 f~~i~~tSaL-T~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k   93 (143)
                      +..+++..+- .|.+...+--++++++|+++|+|++++.+++|++++++|+++.+..+
T Consensus        48 ~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3345544433 44554678888999999999999999999999999999999988654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.14  E-value=0.0015  Score=45.93  Aligned_cols=50  Identities=26%  Similarity=0.343  Sum_probs=41.8

Q ss_pred             cChh--hHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326         43 VTSL--TYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV   92 (143)
Q Consensus        43 tSaL--T~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~   92 (143)
                      .-|+  .|.+...+--+.+.++++++|+|++++.+++|+++.++|+++-+..
T Consensus        53 ~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           53 YIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             hCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4455  4455467778889999999999999999999999999999997654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00