Psyllid ID: psy13354
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1342 | 2.2.26 [Sep-21-2011] | |||||||
| A6T482 | 645 | tRNA uridine 5-carboxymet | yes | N/A | 0.431 | 0.897 | 0.656 | 0.0 | |
| A4GAI2 | 645 | tRNA uridine 5-carboxymet | yes | N/A | 0.431 | 0.897 | 0.646 | 0.0 | |
| B2JJL1 | 652 | tRNA uridine 5-carboxymet | yes | N/A | 0.428 | 0.881 | 0.616 | 0.0 | |
| B1YQK2 | 656 | tRNA uridine 5-carboxymet | yes | N/A | 0.426 | 0.871 | 0.621 | 0.0 | |
| B1K1K2 | 656 | tRNA uridine 5-carboxymet | yes | N/A | 0.426 | 0.871 | 0.621 | 0.0 | |
| A0K2X0 | 656 | tRNA uridine 5-carboxymet | yes | N/A | 0.426 | 0.871 | 0.621 | 0.0 | |
| Q1BR97 | 656 | tRNA uridine 5-carboxymet | yes | N/A | 0.426 | 0.871 | 0.621 | 0.0 | |
| Q0BJM8 | 656 | tRNA uridine 5-carboxymet | yes | N/A | 0.426 | 0.871 | 0.621 | 0.0 | |
| B4E581 | 656 | tRNA uridine 5-carboxymet | yes | N/A | 0.426 | 0.871 | 0.621 | 0.0 | |
| Q13SP0 | 652 | tRNA uridine 5-carboxymet | yes | N/A | 0.432 | 0.891 | 0.602 | 0.0 |
| >sp|A6T482|MNMG_JANMA tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Janthinobacterium sp. (strain Marseille) GN=mnmG PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/583 (65%), Positives = 484/583 (83%), Gaps = 4/583 (0%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG MAIATD++GIQFRILNSSKG AVRATRAQ DRILYKQAIR
Sbjct: 56 KGHLVKEV----DAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKQAIRSR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT++GIKF+++ V+LT GTFL+GKIH+GL +YS
Sbjct: 112 LENQPNLWLFQQAVDDLLVEGDRVIGAVTQVGIKFYARAVVLTAGTFLDGKIHVGLNNYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
AGR GD SL+ RLKEL+L GRLKTGTPPRID R+IDFS M+EQ GD DP+PVFSV+
Sbjct: 172 AGRAGDPPAISLSARLKELKLPQGRLKTGTPPRIDGRSIDFSVMQEQPGDLDPIPVFSVM 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G++ +HPKQ+ C+ITHTNEKTH++IRS SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GSVAMHPKQMPCWITHTNEKTHDLIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFAGK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IFLEPEG+ NE+YPNGISTSLPF+ Q+ LVQS+ G+++A+I+RPGYAIEYDYF+P
Sbjct: 292 DSHQIFLEPEGLTTNEFYPNGISTSLPFDIQLALVQSMRGLEHAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LKS+LETK I GLFFAGQINGTTGYEEAA+QG+LAG+NAAL +Q+RD W P RD+AYL
Sbjct: 352 RGLKSTLETKVIQGLFFAGQINGTTGYEEAAAQGMLAGINAALQTQERDAWTPRRDEAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GV+VDDLITKG+ EPYRMFTSRAEYRL+LREDNAD+RLTEIG +LGCV QW +FE KR
Sbjct: 412 GVMVDDLITKGVLEPYRMFTSRAEYRLSLREDNADMRLTEIGRQLGCVGDAQWAVFETKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E + +EL+RL+ TW++P IL E+ERVLGK I+ EY+L++LL PNV+Y TL SLKG++
Sbjct: 472 EAVARELERLRSTWVSPRILAEAEAERVLGKGIEREYALADLLRRPNVSYETLMSLKGVD 531
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
G++L + ++ +++Q++IQL+Y GYI RQ EVE++ ENLKLP DYM+++ LS
Sbjct: 532 GQDLAGPGVAEDAVREQVEIQLKYAGYIDRQAKEVERHDYYENLKLPQEFDYMEVKGLSF 591
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLKNF 1339
E RQKL K+KPET+GQASRISGVTPAA++LLL++LK G K F
Sbjct: 592 EVRQKLCKHKPETLGQASRISGVTPAAISLLLVHLKKGGFKEF 634
|
NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. Janthinobacterium sp. (strain Marseille) (taxid: 375286) |
| >sp|A4GAI2|MNMG_HERAR tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Herminiimonas arsenicoxydans GN=mnmG PE=3 SV=2 | Back alignment and function description |
|---|
Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/583 (64%), Positives = 476/583 (81%), Gaps = 4/583 (0%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG MAIATD++GIQFRILNSSKG AVRATRAQ DRILYKQAIR
Sbjct: 56 KGHLVREV----DAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKQAIRSR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT+ GI+F ++ V+LT GTFL+GKIHIG+ +YS
Sbjct: 112 LENQPNLWLFQQGVDDLLVEGDRVVGAVTQAGIQFRARAVVLTAGTFLDGKIHIGMNNYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
AGR GD SL+ RLKEL+L GRLKTGTPPRID R+IDFS M EQ GD DP+PVFSV+
Sbjct: 172 AGRAGDPPAISLSARLKELKLPQGRLKTGTPPRIDGRSIDFSVMTEQPGDLDPIPVFSVM 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G++ +HP+Q+ C+ITHTNEKTH +IR SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GSVAMHPQQMPCWITHTNEKTHELIRGGLDRSPMYTGMIEGVGPRYCPSIEDKIHRFAGK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
+SH IFLEPEG+ NEYYPNGISTSLPF+ Q+ LVQS+ G+++A+I+RPGYAIEYDYF+P
Sbjct: 292 ESHQIFLEPEGLTTNEYYPNGISTSLPFDVQLALVQSMRGLEHAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK++LETK I GLFFAGQINGTTGYEEAA+QG+LAG+NAAL Q+RD W P RD+AYL
Sbjct: 352 RGLKATLETKVIQGLFFAGQINGTTGYEEAAAQGMLAGINAALQIQERDAWTPRRDEAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDLIT+G+ EPYRMFTSRAEYRL+LREDNAD+RLT++G +LGCV QW +FE KR
Sbjct: 412 GVLVDDLITQGVLEPYRMFTSRAEYRLSLREDNADMRLTDVGRQLGCVGDVQWALFETKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E + +EL+RL+ TW++P IL E+ERVLGK I+ EY+L++LL PNV Y TL SLKG++
Sbjct: 472 EAVARELERLRSTWVSPRILAEAEAERVLGKGIEREYALADLLRRPNVTYETLMSLKGMD 531
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
G++L + + +++Q++IQL+Y GYI RQ EVE++ ENLKLP DYM ++ LSI
Sbjct: 532 GQDLGGPGVAEPAVREQVEIQLKYAGYIDRQAREVERHDHYENLKLPAEFDYMAVKGLSI 591
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLKNF 1339
E RQKL K +PET+GQASRISGVTPAA++L+L++LK G K F
Sbjct: 592 EVRQKLTKQRPETLGQASRISGVTPAAISLMLVHLKKGGFKEF 634
|
NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. Herminiimonas arsenicoxydans (taxid: 204773) |
| >sp|B2JJL1|MNMG_BURP8 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=mnmG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/582 (61%), Positives = 470/582 (80%), Gaps = 7/582 (1%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG MA ATD+ GIQFRILNSSKG AVRATRAQ DRILYK AIR
Sbjct: 56 KGHLVKEV----DALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRILYKAAIRHR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT++G++F S+ V+LT GTFL+GKIH+GL +Y+
Sbjct: 112 LENQPNLWLFQQSVDDLMVEGDRVVGAVTQVGVRFRSRAVVLTAGTFLDGKIHVGLNNYT 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + SL+ RLKEL+L GRLKTGTPPRID RTIDFSK+EEQ GD DP+PVFS L
Sbjct: 172 GGRAGDPAAVSLSARLKELKLPQGRLKTGTPPRIDGRTIDFSKLEEQPGDLDPIPVFSFL 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G + HP+Q+ C++THTN +TH+IIRS SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GRVEQHPRQVPCWVTHTNAQTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
+SH IFLEPEG+ NE+YPNGISTSLPF+ Q+ELV+S+ G+++A+I+RPGYAIEYDYF+P
Sbjct: 292 ESHQIFLEPEGLTTNEFYPNGISTSLPFDVQLELVRSMVGLEHAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK+SLETK I GLFFAGQINGTTGYEEAA+QGLLAG+NA L+ Q + PW P RDQAYL
Sbjct: 352 RGLKASLETKAISGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQSKGPWCPRRDQAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL+T+G+ EPYRMFTSRAEYRL+LREDNAD+RLTEIG +LG V +W F +KR
Sbjct: 412 GVLVDDLVTRGVSEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFSRKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLK-GI 1235
+ +++E +RL+ TW+NP L++ E+ +LGK I HEYSL++LL P V+Y+ + L+ G
Sbjct: 472 DAVSRETERLRTTWVNPKTLSSEEATALLGKPIDHEYSLADLLRRPGVSYDGICGLREGT 531
Query: 1236 NGKN--LYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQS 1293
G + L + ++ IK+Q++I ++Y+GYI RQ E+E+N+ +EN +LP NLDY +++
Sbjct: 532 CGPDEALAHDDVLLAQIKEQIEIGVKYQGYIERQAGEIERNEAHENTRLPENLDYTEVRG 591
Query: 1294 LSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGF 1335
LS EARQKL +++PETIGQASRISG+TPAA++LL+++LK G
Sbjct: 592 LSFEARQKLTQFRPETIGQASRISGITPAAISLLMVHLKRGL 633
|
NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. Burkholderia phymatum (strain DSM 17167 / STM815) (taxid: 391038) |
| >sp|B1YQK2|MNMG_BURA4 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Burkholderia ambifaria (strain MC40-6) GN=mnmG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/579 (62%), Positives = 463/579 (79%), Gaps = 7/579 (1%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG MA ATD+SGIQFRILNSSKG AVRATRAQ DRILYK AIR
Sbjct: 56 KGHLVKEV----DALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT+IGI+F ++ V+LT GTFL+GKIH+GL +Y+
Sbjct: 112 LENQPNLWLFQQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYT 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + SL+ RLKEL+L GRLKTGTPPRID R+IDFSK++EQ GD DP+PVFS L
Sbjct: 172 GGRAGDPAAVSLSARLKELKLPQGRLKTGTPPRIDGRSIDFSKLDEQPGDLDPIPVFSFL 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G HP+QL C++THTNE+TH+IIR SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GRAEQHPQQLPCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
+SH IFLEPEG+ NE+YPNGISTSLPF+ Q+ELV S+ G++NA+I+RPGYAIEYDYF+P
Sbjct: 292 ESHQIFLEPEGLTTNEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK+SLETK I+GLFFAGQINGTTGYEEAA+QGLLAGLNA + Q++D W P RDQAYL
Sbjct: 352 RALKASLETKAINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL+T+G+ EPYRMFTSRAEYRL+LREDNAD+RLTEIG +LG V +W F +KR
Sbjct: 412 GVLVDDLVTRGVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKG-- 1234
+ +++E +RLK TW+ P L E+ +LGK I HEYSL+ LL P ++Y+ + SLKG
Sbjct: 472 DAVSRETERLKSTWVTPKTLPPKEATALLGKAIDHEYSLAELLRRPGISYDGVCSLKGGE 531
Query: 1235 -INGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQS 1293
+ L + + E IK+Q++I ++Y+GYI RQ +E+E+N NEN +LP +DY +++
Sbjct: 532 CAPAEPLADDPVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRG 591
Query: 1294 LSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
LS E QKLN+++PETIGQASRISGVTPAA++LL+++LK
Sbjct: 592 LSFEVSQKLNEFRPETIGQASRISGVTPAAISLLMVHLK 630
|
NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. Burkholderia ambifaria (strain MC40-6) (taxid: 398577) |
| >sp|B1K1K2|MNMG_BURCC tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Burkholderia cenocepacia (strain MC0-3) GN=mnmG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/579 (62%), Positives = 463/579 (79%), Gaps = 7/579 (1%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG MA ATD+SGIQFRILNSSKG AVRATRAQ DRILYK AIR
Sbjct: 56 KGHLVKEV----DALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT+IGI+F ++ V+LT GTFL+GKIH+GL +Y+
Sbjct: 112 LENQPNLWLFQQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYT 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + SL+ RLKEL+L GRLKTGTPPRID RTIDFSK++EQ GD DP+PVFS L
Sbjct: 172 GGRAGDPAAVSLSSRLKELKLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFL 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G HP+QL C++THTNE+TH+IIR SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GRAEQHPQQLPCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
+SH IFLEPEG+ +E+YPNGISTSLPF+ Q+ELV S+ G++NA+I+RPGYAIEYDYF+P
Sbjct: 292 ESHQIFLEPEGLTTHEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK+SLETK I+GLFFAGQINGTTGYEEAA+QGLLAGLNA + Q++D W P RDQAYL
Sbjct: 352 RALKASLETKAINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL+T+G+ EPYRMFTSRAEYRL+LREDNAD+RLTEIG +LG V +W F +KR
Sbjct: 412 GVLVDDLVTRGVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
+ +++E +RLK TW+ P L E+ +LGK I+HEYSL+ LL P V+Y+ + LKG
Sbjct: 472 DAVSRETERLKSTWVTPKTLPAEEATALLGKAIEHEYSLAELLRRPGVSYDGVCGLKGGE 531
Query: 1237 ---GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQS 1293
+ L + + E IK+Q++I ++Y+GYI RQ +E+E+N NEN +LP +DY +++
Sbjct: 532 CGPAEPLADDPVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRG 591
Query: 1294 LSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
LS E QKLN+++PETIGQASRISGVTPAA++LL+++LK
Sbjct: 592 LSFEVSQKLNEFRPETIGQASRISGVTPAAISLLMVHLK 630
|
NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. Burkholderia cenocepacia (strain MC0-3) (taxid: 406425) |
| >sp|A0K2X0|MNMG_BURCH tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Burkholderia cenocepacia (strain HI2424) GN=mnmG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/579 (62%), Positives = 463/579 (79%), Gaps = 7/579 (1%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG MA ATD+SGIQFRILNSSKG AVRATRAQ DRILYK AIR
Sbjct: 56 KGHLVKEV----DALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT+IGI+F ++ V+LT GTFL+GKIH+GL +Y+
Sbjct: 112 LENQPNLWLFQQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYT 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + SL+ RLKEL+L GRLKTGTPPRID RTIDFSK++EQ GD DP+PVFS L
Sbjct: 172 GGRAGDPAAVSLSSRLKELKLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFL 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G + HP+QL C++THTNE+TH+IIR SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GRADQHPQQLPCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
+SH IFLEPEG+ +E+YPNGISTSLPF+ Q+ELV S+ G++NA+I+RPGYAIEYDYF+P
Sbjct: 292 ESHQIFLEPEGLTTHEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK+SLETK I+GLFFAGQINGTTGYEEAA+QGLLAGLNA + Q++D W P RDQAYL
Sbjct: 352 RALKASLETKAINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL+T+G+ EPYRMFTSRAEYRL+LREDNAD+RLTEIG +LG V +W F +KR
Sbjct: 412 GVLVDDLVTRGVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
+ +++E +RLK TW+ P L E+ +LGK I HEYSL+ LL P V+Y+ + LKG
Sbjct: 472 DAVSRETERLKSTWVTPKTLPVEEATALLGKAIDHEYSLAELLRRPGVSYDGVCGLKGGE 531
Query: 1237 ---GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQS 1293
+ L + + E IK+Q++I ++Y+GYI RQ +E+E+N NEN +LP +DY +++
Sbjct: 532 CGPAEPLADDPVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRG 591
Query: 1294 LSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
LS E QKLN+++PETIGQASRISGVTPAA++LL+++LK
Sbjct: 592 LSFEVSQKLNEFRPETIGQASRISGVTPAAISLLMVHLK 630
|
NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. Burkholderia cenocepacia (strain HI2424) (taxid: 331272) |
| >sp|Q1BR97|MNMG_BURCA tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Burkholderia cenocepacia (strain AU 1054) GN=mnmG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/579 (62%), Positives = 463/579 (79%), Gaps = 7/579 (1%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG MA ATD+SGIQFRILNSSKG AVRATRAQ DRILYK AIR
Sbjct: 56 KGHLVKEV----DALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT+IGI+F ++ V+LT GTFL+GKIH+GL +Y+
Sbjct: 112 LENQPNLWLFQQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYT 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + SL+ RLKEL+L GRLKTGTPPRID RTIDFSK++EQ GD DP+PVFS L
Sbjct: 172 GGRAGDPAAVSLSSRLKELKLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFL 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G + HP+QL C++THTNE+TH+IIR SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GRADQHPQQLPCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
+SH IFLEPEG+ +E+YPNGISTSLPF+ Q+ELV S+ G++NA+I+RPGYAIEYDYF+P
Sbjct: 292 ESHQIFLEPEGLTTHEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK+SLETK I+GLFFAGQINGTTGYEEAA+QGLLAGLNA + Q++D W P RDQAYL
Sbjct: 352 RALKASLETKAINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL+T+G+ EPYRMFTSRAEYRL+LREDNAD+RLTEIG +LG V +W F +KR
Sbjct: 412 GVLVDDLVTRGVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
+ +++E +RLK TW+ P L E+ +LGK I HEYSL+ LL P V+Y+ + LKG
Sbjct: 472 DAVSRETERLKSTWVTPKTLPVEEATALLGKAIDHEYSLAELLRRPGVSYDGVCGLKGGE 531
Query: 1237 ---GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQS 1293
+ L + + E IK+Q++I ++Y+GYI RQ +E+E+N NEN +LP +DY +++
Sbjct: 532 CGPAEPLADDPVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRG 591
Query: 1294 LSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
LS E QKLN+++PETIGQASRISGVTPAA++LL+++LK
Sbjct: 592 LSFEVSQKLNEFRPETIGQASRISGVTPAAISLLMVHLK 630
|
NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. Burkholderia cenocepacia (strain AU 1054) (taxid: 331271) |
| >sp|Q0BJM8|MNMG_BURCM tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=mnmG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/579 (62%), Positives = 463/579 (79%), Gaps = 7/579 (1%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG MA ATD+SGIQFRILNSSKG AVRATRAQ DRILYK AIR
Sbjct: 56 KGHLVKEV----DALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT+IGI+F ++ V+LT GTFL+GKIH+GL +Y+
Sbjct: 112 LENQPNLWLFQQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYT 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + SL+ RLKEL+L GRLKTGTPPRID R+IDFSK++EQ GD DP+PVFS L
Sbjct: 172 GGRAGDPAAVSLSARLKELKLPQGRLKTGTPPRIDGRSIDFSKLDEQPGDLDPIPVFSFL 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G HP+QL C++THTNE+TH+IIR SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GRAEQHPQQLPCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
+SH IFLEPEG+ NE+YPNGISTSLPF+ Q+ELV S+ G++NA+I+RPGYAIEYDYF+P
Sbjct: 292 ESHQIFLEPEGLTTNEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK+SLETK I+GLFFAGQINGTTGYEEAA+QGLLAGLNA + Q++D W P RDQAYL
Sbjct: 352 RALKASLETKAINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKDAWCPRRDQAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL+T+G+ EPYRMFTSRAEYRL+LREDNAD+RLTEIG +LG V +W F +KR
Sbjct: 412 GVLVDDLVTRGVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKG-- 1234
+ +++E +RLK TW+ P L E+ +LGK I HEYSL+ LL P ++Y+ + SLKG
Sbjct: 472 DAVSRETERLKSTWVTPKTLPPEEATALLGKAIDHEYSLAELLRRPGISYDGVCSLKGGE 531
Query: 1235 -INGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQS 1293
+ L + + E IK+Q++I ++Y+GYI RQ +E+E+N NEN +LP +DY +++
Sbjct: 532 CAPTEPLADDPVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRG 591
Query: 1294 LSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
LS E QKLN+++PETIGQASRISGVTPAA++LL+++LK
Sbjct: 592 LSFEVSQKLNEFRPETIGQASRISGVTPAAISLLMVHLK 630
|
NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (taxid: 339670) |
| >sp|B4E581|MNMG_BURCJ tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=mnmG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/579 (62%), Positives = 462/579 (79%), Gaps = 7/579 (1%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG MA ATD+SGIQFRILNSSKG AVRATRAQ DRILYK AIR
Sbjct: 56 KGHLVKEV----DALGGAMAAATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRHR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT+IGI+F ++ V+LT GTFL+GKIH+GL +Y+
Sbjct: 112 LENQPNLWLFQQAVDDLMVEGDRVVGAVTQIGIRFRARAVVLTAGTFLDGKIHVGLNNYT 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + SL+ RLKEL+L GRLKTGTPPRID RTIDFSK++EQ GD DP+PVFS L
Sbjct: 172 GGRAGDPAAVSLSSRLKELKLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFL 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G HP+QL C++THTNE+TH+IIR SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GRAEQHPQQLPCWVTHTNERTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
+SH IFLEPEG+ NE+YPNGISTSLPF+ Q+ELV S+ G++NA+I+RPGYAIEYDYF+P
Sbjct: 292 ESHQIFLEPEGLTTNEFYPNGISTSLPFDVQLELVHSMRGLENAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK+SLETK I+GLFFAGQINGTTGYEEAA+QGLLAGLNA + Q+++ W P RDQAYL
Sbjct: 352 RALKASLETKAINGLFFAGQINGTTGYEEAAAQGLLAGLNAGRYVQEKEAWCPRRDQAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL+T+G+ EPYRMFTSRAEYRL+LREDNAD+RLTEIG +LG V +W F +KR
Sbjct: 412 GVLVDDLVTRGVAEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGLVDDARWDAFSRKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
+ +++E +RLK TW+ P L E+ +LGK I HEYSL+ LL P V+Y+ + LKG
Sbjct: 472 DAVSRETERLKSTWVTPKTLPAEEATALLGKAIDHEYSLAELLRRPGVSYDGVCGLKGGE 531
Query: 1237 ---GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQS 1293
+ L + + E IK+Q++I ++Y+GYI RQ +E+E+N NEN +LP +DY +++
Sbjct: 532 CGPAEPLTDDPVLLEQIKEQVEIGIKYQGYIERQASEIERNDANENTRLPDGIDYREVRG 591
Query: 1294 LSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
LS E QKLN+++PETIGQASRISGVTPAA++LL+++LK
Sbjct: 592 LSFEVSQKLNEFRPETIGQASRISGVTPAAISLLMVHLK 630
|
NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. Burkholderia cepacia (strain J2315 / LMG 16656) (taxid: 216591) |
| >sp|Q13SP0|MNMG_BURXL tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Burkholderia xenovorans (strain LB400) GN=mnmG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/588 (60%), Positives = 467/588 (79%), Gaps = 7/588 (1%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG MA ATD+ GIQFRILNSSKG AVRATRAQ DR+LYKQAIR
Sbjct: 56 KGHLVKEV----DALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRLLYKQAIRHR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT++GI+F + V+LT GTFL+GKIH+GL +Y+
Sbjct: 112 LENQPNLWLFQQAVDDLMVEGDRVVGAVTQVGIRFRGRAVVLTAGTFLDGKIHVGLNNYT 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + SL+ RLKEL+L GRLKTGTPPRID RTIDFS++EEQ GD DPVPVFS L
Sbjct: 172 GGRAGDPAAVSLSARLKELKLPQGRLKTGTPPRIDGRTIDFSQLEEQPGDLDPVPVFSFL 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G + HP+Q+ C++THTN +TH+IIR SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GRVEQHPRQVPCWVTHTNARTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
+SH IFLEPEG+ NE+YPNGISTSLPF+ Q+ELV+S+ G+++A+I+RPGYAIEYDYF+P
Sbjct: 292 ESHQIFLEPEGLTTNEFYPNGISTSLPFDVQLELVRSMRGLEHAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK+SLETK I GLFFAGQINGTTGYEEAA+QGLLAG+NA L+ Q ++ W P RDQAYL
Sbjct: 352 RGLKASLETKVISGLFFAGQINGTTGYEEAAAQGLLAGINAGLYVQGKEAWCPRRDQAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL+T+G+ EPYRMFTSRAEYRL+LREDNAD+RLTEIG +LG V +W F +KR
Sbjct: 412 GVLVDDLVTRGVSEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFSRKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKG-- 1234
+ +++E +RL+ TW+NP L+ E+ +LGK I HEYSL++LL P V+Y+ + +L+
Sbjct: 472 DAVSRETERLRTTWVNPKTLSADEATALLGKPIDHEYSLADLLRRPGVSYDGVCALRAGA 531
Query: 1235 -INGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQS 1293
+ L ++ IK+Q++I ++Y+GYI RQ E+E+N+ +E+ +LP LDY +++
Sbjct: 532 CAAPETLAEDDVLLAQIKEQIEIGIKYQGYIDRQAGEIERNEAHESTRLPEGLDYAEVRG 591
Query: 1294 LSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLKNFIK 1341
LS EARQKL +++PETIGQASRISG+TPAA++LL+++LK G + K
Sbjct: 592 LSFEARQKLTQFRPETIGQASRISGITPAAISLLMVHLKRGLGRRPTK 639
|
NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34. Burkholderia xenovorans (strain LB400) (taxid: 266265) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1342 | ||||||
| 399020764 | 651 | glucose-inhibited division protein A [He | 0.430 | 0.887 | 0.661 | 0.0 | |
| 152980753 | 645 | tRNA uridine 5-carboxymethylaminomethyl | 0.431 | 0.897 | 0.656 | 0.0 | |
| 340789584 | 641 | tRNA uridine 5-carboxymethylaminomethyl | 0.431 | 0.903 | 0.663 | 0.0 | |
| 415905935 | 615 | tRNA uridine 5-carboxymethylaminomethyl | 0.431 | 0.941 | 0.648 | 0.0 | |
| 329900649 | 644 | tRNA uridine 5-carboxymethylaminomethyl | 0.432 | 0.900 | 0.645 | 0.0 | |
| 205831546 | 645 | RecName: Full=tRNA uridine 5-carboxymeth | 0.431 | 0.897 | 0.646 | 0.0 | |
| 300314067 | 642 | glucose inhibited division GidA protein | 0.429 | 0.898 | 0.643 | 0.0 | |
| 134096565 | 601 | tRNA uridine 5-carboxymethylaminomethyl | 0.431 | 0.963 | 0.646 | 0.0 | |
| 398836797 | 641 | glucose-inhibited division protein A [He | 0.429 | 0.898 | 0.65 | 0.0 | |
| 395760438 | 645 | tRNA uridine 5-carboxymethylaminomethyl | 0.428 | 0.891 | 0.651 | 0.0 |
| >gi|399020764|ref|ZP_10722889.1| glucose-inhibited division protein A [Herbaspirillum sp. CF444] gi|398093995|gb|EJL84367.1| glucose-inhibited division protein A [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/582 (66%), Positives = 483/582 (82%), Gaps = 4/582 (0%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG MAIATD++GIQFRILNSSKG AVRATRAQ DRILYKQAIR
Sbjct: 56 KGHLVKEV----DAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKQAIRSR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT+ GIKF + V+LT GTFL+GKIH+GL +YS
Sbjct: 112 LENQPNLWLFQQAVDDLMVEGDRVIGAVTQAGIKFAGRAVVLTAGTFLDGKIHVGLNNYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
AGR GD SL+ RLKEL+L GRLKTGTPPRID R+IDFS +EEQ GD DP+PVFSV+
Sbjct: 172 AGRAGDPPAISLSARLKELKLPQGRLKTGTPPRIDGRSIDFSVLEEQPGDLDPIPVFSVM 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
GN+ +HP+Q+ C+ITHTN +TH+IIR+ SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GNVAMHPEQMPCWITHTNTQTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSGK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH I+LEPEG+ NE+YPNGISTSLPF+ Q+ LV+S+ GM+NA+I+RPGYAIEYDYF+P
Sbjct: 292 DSHQIYLEPEGLTTNEFYPNGISTSLPFDVQLALVRSMRGMENAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LKSSLET+QI GLFFAGQINGTTGYEEAA+QG+LAGLNAAL +Q +D W P RD+AYL
Sbjct: 352 RGLKSSLETRQIQGLFFAGQINGTTGYEEAAAQGMLAGLNAALQTQGKDSWTPRRDEAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDLIT+G+QEPYRMFTSRAEYRL+LREDNADLRLTEIG +LGCV QW++FEKKR
Sbjct: 412 GVLVDDLITQGVQEPYRMFTSRAEYRLSLREDNADLRLTEIGRQLGCVGDAQWEMFEKKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E + +E++RLK TW+NP IL E+ERVLGK I+ EY+L +LL PNV Y++L +L G +
Sbjct: 472 EAVAREMERLKSTWVNPRILGDAEAERVLGKAIEREYNLVDLLRRPNVTYDSLMTLTGAD 531
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
G+ L + + +++Q++IQ++Y GYI RQ E+ + + NE+LKLP +LDYM +++LSI
Sbjct: 532 GQALAGPGVADDPVREQIEIQIKYAGYIDRQAKEIGRQEHNESLKLPADLDYMDVKALSI 591
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLKN 1338
E RQKLNK+KPET+GQASRISGVTPAAL+LLL++LK G LKN
Sbjct: 592 EVRQKLNKHKPETLGQASRISGVTPAALSLLLVHLKKGGLKN 633
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|152980753|ref|YP_001355329.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA [Janthinobacterium sp. Marseille] gi|166222939|sp|A6T482.1|MNMG_JANMA RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; AltName: Full=Glucose-inhibited division protein A gi|151280830|gb|ABR89240.1| glucose inhibited division protein A [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/583 (65%), Positives = 484/583 (83%), Gaps = 4/583 (0%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG MAIATD++GIQFRILNSSKG AVRATRAQ DRILYKQAIR
Sbjct: 56 KGHLVKEV----DAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKQAIRSR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT++GIKF+++ V+LT GTFL+GKIH+GL +YS
Sbjct: 112 LENQPNLWLFQQAVDDLLVEGDRVIGAVTQVGIKFYARAVVLTAGTFLDGKIHVGLNNYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
AGR GD SL+ RLKEL+L GRLKTGTPPRID R+IDFS M+EQ GD DP+PVFSV+
Sbjct: 172 AGRAGDPPAISLSARLKELKLPQGRLKTGTPPRIDGRSIDFSVMQEQPGDLDPIPVFSVM 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G++ +HPKQ+ C+ITHTNEKTH++IRS SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GSVAMHPKQMPCWITHTNEKTHDLIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFAGK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IFLEPEG+ NE+YPNGISTSLPF+ Q+ LVQS+ G+++A+I+RPGYAIEYDYF+P
Sbjct: 292 DSHQIFLEPEGLTTNEFYPNGISTSLPFDIQLALVQSMRGLEHAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LKS+LETK I GLFFAGQINGTTGYEEAA+QG+LAG+NAAL +Q+RD W P RD+AYL
Sbjct: 352 RGLKSTLETKVIQGLFFAGQINGTTGYEEAAAQGMLAGINAALQTQERDAWTPRRDEAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GV+VDDLITKG+ EPYRMFTSRAEYRL+LREDNAD+RLTEIG +LGCV QW +FE KR
Sbjct: 412 GVMVDDLITKGVLEPYRMFTSRAEYRLSLREDNADMRLTEIGRQLGCVGDAQWAVFETKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E + +EL+RL+ TW++P IL E+ERVLGK I+ EY+L++LL PNV+Y TL SLKG++
Sbjct: 472 EAVARELERLRSTWVSPRILAEAEAERVLGKGIEREYALADLLRRPNVSYETLMSLKGVD 531
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
G++L + ++ +++Q++IQL+Y GYI RQ EVE++ ENLKLP DYM+++ LS
Sbjct: 532 GQDLAGPGVAEDAVREQVEIQLKYAGYIDRQAKEVERHDYYENLKLPQEFDYMEVKGLSF 591
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLKNF 1339
E RQKL K+KPET+GQASRISGVTPAA++LLL++LK G K F
Sbjct: 592 EVRQKLCKHKPETLGQASRISGVTPAAISLLLVHLKKGGFKEF 634
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|340789584|ref|YP_004755049.1| tRNA uridine 5-carboxymethylaminomethyl modification protein gidA [Collimonas fungivorans Ter331] gi|340554851|gb|AEK64226.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/583 (66%), Positives = 483/583 (82%), Gaps = 4/583 (0%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG MAIATD++GIQFRILNSSKG AVRATRAQ DRILYKQAIR
Sbjct: 56 KGHLVKEV----DAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKQAIRSR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT++GI+F S+ V+LT GTFL+GKIH+GL +YS
Sbjct: 112 LENQENLWLFQQAVDDLLVEGDRVVGAVTQVGIQFRSRAVVLTAGTFLDGKIHVGLNNYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
AGR GD SL+ RLKEL+L GRLKTGTPPRID RTIDFS M+EQ GD DPVPVFSV+
Sbjct: 172 AGRAGDPPAISLSARLKELKLPQGRLKTGTPPRIDGRTIDFSGMQEQPGDLDPVPVFSVM 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
GN ++HP QL C+ITHTN++TH+IIR+ SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GNASMHPAQLPCWITHTNQQTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFAGK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IFLEPEG+ NE+YPNGISTSLPF+ Q+ LV S+ G++NA+I+RPGYAIEYDYF+P
Sbjct: 292 DSHQIFLEPEGLTTNEFYPNGISTSLPFDVQLALVHSMRGLENAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK+SLETK I GL+FAGQINGTTGYEEAA+QG+LAGLNAAL +Q+RD W P RD+AYL
Sbjct: 352 RALKASLETKSIQGLYFAGQINGTTGYEEAAAQGMLAGLNAALQTQERDAWTPRRDEAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDLIT+G+QEPYRMFTSRAEYRL+LREDNADLRLTEIG +LGCV QW FEKKR
Sbjct: 412 GVLVDDLITQGVQEPYRMFTSRAEYRLSLREDNADLRLTEIGRQLGCVGDAQWAQFEKKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E + E++RL+ TW+NP I+ E+ER+LGK I+ EYSL +LL PNV+Y+ L +LKG++
Sbjct: 472 EAVALEMERLRSTWVNPRIVAEAEAERLLGKAIEREYSLVDLLRRPNVSYDQLMTLKGLD 531
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
G++L + + +K+Q++IQ++Y GYI RQ EVE+++ NENLKLP +LDYM +Q+LSI
Sbjct: 532 GQDLGGPGVQDDTVKEQVEIQVKYAGYIDRQAKEVERHEHNENLKLPADLDYMDVQALSI 591
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLKNF 1339
E RQKLN ++PET GQASRISGVTPAAL+LLL++LK G +K
Sbjct: 592 EVRQKLNLHRPETFGQASRISGVTPAALSLLLVHLKKGGMKRL 634
|
Source: Collimonas fungivorans Ter331 Species: Collimonas fungivorans Genus: Collimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|415905935|ref|ZP_11552622.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG [Herbaspirillum frisingense GSF30] gi|407763222|gb|EKF71920.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG [Herbaspirillum frisingense GSF30] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/583 (64%), Positives = 476/583 (81%), Gaps = 4/583 (0%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG MAIATD++GIQFRILNSSKG AVRATRAQ DRILYK AIR
Sbjct: 29 KGHLVKEV----DAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRSR 84
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT+ GI+F V+LT GTFL+GKIH+GL +YS
Sbjct: 85 LENQPNLWLFQQAVDDLMLEGDRVVGAVTQAGIRFAGHAVVLTAGTFLDGKIHVGLNNYS 144
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD SL+ RLKEL+L GRLKTGTPPRID R+I+ + +EEQ GD DPVPVFSV+
Sbjct: 145 GGRAGDPPAVSLSARLKELKLPQGRLKTGTPPRIDGRSINLAILEEQPGDLDPVPVFSVM 204
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
GN +HP+Q+ C+ITHTN +TH+IIR SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 205 GNAAMHPRQMPCWITHTNSRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASK 264
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH I+LEPEG+ +E+YPNGISTSLPF+ Q+ELV+S+ GM+NA+I+RPGYAIEYDY++P
Sbjct: 265 DSHQIYLEPEGLTTHEFYPNGISTSLPFDVQLELVRSMKGMENAHILRPGYAIEYDYYDP 324
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LKSSLET+Q+ GLFFAGQINGTTGYEEAA+QG+LAG+NAAL +Q RD W P RD+AYL
Sbjct: 325 RGLKSSLETRQVQGLFFAGQINGTTGYEEAAAQGMLAGINAALQTQGRDAWTPRRDEAYL 384
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL+T+G+QEPYRMFTSRAEYRL+LREDNADLRLTEIG +LGCV QW+ FE+KR
Sbjct: 385 GVLVDDLVTQGVQEPYRMFTSRAEYRLSLREDNADLRLTEIGRELGCVGDAQWEAFERKR 444
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E +++E++RLK TW+NP IL E+ERVLGK I+ EY+L +LL PNVNY++L SL G
Sbjct: 445 EAVSREMERLKSTWVNPRILAAAEAERVLGKAIEREYNLLDLLRRPNVNYDSLMSLTGTE 504
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
G+ L I +++Q++IQ++Y GYI RQ NE+ + +ENLKLP +LDYM +++LSI
Sbjct: 505 GQPLAGPGIEDGPVREQVEIQVKYAGYIARQANEISRQDHSENLKLPADLDYMDVKALSI 564
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLKNF 1339
E RQKLNK++PET+GQASRISGVTPAAL+LLL++LK G LK
Sbjct: 565 EVRQKLNKHRPETLGQASRISGVTPAALSLLLVHLKKGGLKQL 607
|
Source: Herbaspirillum frisingense GSF30 Species: Herbaspirillum frisingense Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|329900649|ref|ZP_08272541.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Oxalobacteraceae bacterium IMCC9480] gi|327549425|gb|EGF33989.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Oxalobacteraceae bacterium IMCC9480] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/584 (64%), Positives = 476/584 (81%), Gaps = 4/584 (0%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG MAIATD++GIQFRILNSSKG AVRATRAQ DR+LYKQAIR
Sbjct: 56 KGHLVREV----DAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRLLYKQAIRTR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDLI++ ++++G VT+IGI+F S+ V+LT GTFL+GKIH+GL +YS
Sbjct: 112 LENQPNLWLFQQAVDDLIVEGDRVVGAVTQIGIQFRSRAVVLTAGTFLDGKIHVGLNNYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
AGR GD +L+ RLKEL++ GRLKTGTPPR+D RTIDFS M+EQ GD DP+PVFSV+
Sbjct: 172 AGRAGDPPAVTLSARLKELKMPQGRLKTGTPPRLDGRTIDFSVMQEQPGDLDPIPVFSVM 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G++++HPKQL C+ITHTNE TH+IIR SP+++G I IGPRYCPSIEDK++RF K
Sbjct: 232 GSVSMHPKQLPCWITHTNESTHDIIRGGLDRSPMYTGVIAGIGPRYCPSIEDKIHRFADK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IFLEPEG+ NEYYPNGISTSLPF+ Q+ LV+S+ G++ A+I+RPGYAIEYDYF+P
Sbjct: 292 SSHQIFLEPEGLTTNEYYPNGISTSLPFDVQLALVRSMVGLEQAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK+SLETK I GLFFAGQINGTTGYEEAA+QG+LAGLNAAL +Q RD W PGRDQAYL
Sbjct: 352 RGLKASLETKSIQGLFFAGQINGTTGYEEAAAQGMLAGLNAALQTQGRDAWTPGRDQAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL+T+G+QEPYRMFTSRAEYRL+LREDNAD+RLTEIG +LGCV QW FE+KR
Sbjct: 412 GVLVDDLVTQGVQEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGCVGDLQWAAFEQKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E + +EL+RL+ TW++P +L ESERVLGK I+ EYSL++LL PNV+Y L L G+
Sbjct: 472 EAVARELERLRSTWVSPRVLAEAESERVLGKAIEREYSLADLLRRPNVSYAGLLGLTGME 531
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
G++L + +++Q++IQL+Y GYI RQ E+E+++ E+LKLP DY+ + +LS+
Sbjct: 532 GQSLAGPGVVDLIVREQVEIQLKYAGYIDRQAREIERHEQFEHLKLPVEFDYLAVSALSM 591
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLKNFI 1340
E RQKL+ ++PET+GQASRISGVTPAA++LLL++LK G F+
Sbjct: 592 EVRQKLHAHRPETLGQASRISGVTPAAMSLLLVHLKKGGYNEFL 635
|
Source: Oxalobacteraceae bacterium IMCC9480 Species: Oxalobacteraceae bacterium IMCC9480 Genus: Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|205831546|sp|A4GAI2.2|MNMG_HERAR RecName: Full=tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; AltName: Full=Glucose-inhibited division protein A gi|193222447|emb|CAL63519.2| tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA (Glucose-inhibited division protein A) [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/583 (64%), Positives = 476/583 (81%), Gaps = 4/583 (0%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG MAIATD++GIQFRILNSSKG AVRATRAQ DRILYKQAIR
Sbjct: 56 KGHLVREV----DAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKQAIRSR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT+ GI+F ++ V+LT GTFL+GKIHIG+ +YS
Sbjct: 112 LENQPNLWLFQQGVDDLLVEGDRVVGAVTQAGIQFRARAVVLTAGTFLDGKIHIGMNNYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
AGR GD SL+ RLKEL+L GRLKTGTPPRID R+IDFS M EQ GD DP+PVFSV+
Sbjct: 172 AGRAGDPPAISLSARLKELKLPQGRLKTGTPPRIDGRSIDFSVMTEQPGDLDPIPVFSVM 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G++ +HP+Q+ C+ITHTNEKTH +IR SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GSVAMHPQQMPCWITHTNEKTHELIRGGLDRSPMYTGMIEGVGPRYCPSIEDKIHRFAGK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
+SH IFLEPEG+ NEYYPNGISTSLPF+ Q+ LVQS+ G+++A+I+RPGYAIEYDYF+P
Sbjct: 292 ESHQIFLEPEGLTTNEYYPNGISTSLPFDVQLALVQSMRGLEHAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK++LETK I GLFFAGQINGTTGYEEAA+QG+LAG+NAAL Q+RD W P RD+AYL
Sbjct: 352 RGLKATLETKVIQGLFFAGQINGTTGYEEAAAQGMLAGINAALQIQERDAWTPRRDEAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDLIT+G+ EPYRMFTSRAEYRL+LREDNAD+RLT++G +LGCV QW +FE KR
Sbjct: 412 GVLVDDLITQGVLEPYRMFTSRAEYRLSLREDNADMRLTDVGRQLGCVGDVQWALFETKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E + +EL+RL+ TW++P IL E+ERVLGK I+ EY+L++LL PNV Y TL SLKG++
Sbjct: 472 EAVARELERLRSTWVSPRILAEAEAERVLGKGIEREYALADLLRRPNVTYETLMSLKGMD 531
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
G++L + + +++Q++IQL+Y GYI RQ EVE++ ENLKLP DYM ++ LSI
Sbjct: 532 GQDLGGPGVAEPAVREQVEIQLKYAGYIDRQAREVERHDHYENLKLPAEFDYMAVKGLSI 591
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLKNF 1339
E RQKL K +PET+GQASRISGVTPAA++L+L++LK G K F
Sbjct: 592 EVRQKLTKQRPETLGQASRISGVTPAAISLMLVHLKKGGFKEF 634
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|300314067|ref|YP_003778159.1| glucose inhibited division GidA protein [Herbaspirillum seropedicae SmR1] gi|300076852|gb|ADJ66251.1| glucose inhibited division GidA protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/581 (64%), Positives = 476/581 (81%), Gaps = 4/581 (0%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG MAIATD++GIQFRILNSSKG AVRATRAQ DRILYK AIR
Sbjct: 56 KGHLVKEV----DAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRSR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT+ GI+F + V+LT GTFL+GKIH+GL +YS
Sbjct: 112 LENQPNLWLFQQAVDDLMLEGDRVVGAVTQAGIRFAGRAVVLTAGTFLDGKIHVGLNNYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD SL+ RLKEL+L GRLKTGTPPRID R+I+ + +EEQ GD DPVPVFSV+
Sbjct: 172 GGRAGDPPAVSLSARLKELKLPQGRLKTGTPPRIDGRSINLAILEEQPGDLDPVPVFSVM 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
GN +HP+Q+ C+ITHTN +TH+IIR SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GNAAMHPRQMPCWITHTNSRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH I+LEPEG+ +E+YPNGISTSLPF+ Q+ELV+S+ GM+NA+I+RPGYAIEYDY++P
Sbjct: 292 DSHQIYLEPEGLTTHEFYPNGISTSLPFDVQLELVRSMKGMENAHILRPGYAIEYDYYDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LKSSLET+Q+ GLFFAGQINGTTGYEEAA+QG+LAG+NAAL +Q R+ W P RD+AYL
Sbjct: 352 RGLKSSLETRQVQGLFFAGQINGTTGYEEAAAQGMLAGINAALQTQGREAWTPRRDEAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL+T+G+QEPYRMFTSRAEYRL+LREDNADLRLTEIG +LGCV QW+ F++KR
Sbjct: 412 GVLVDDLVTQGVQEPYRMFTSRAEYRLSLREDNADLRLTEIGRELGCVGDAQWEAFDRKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E +++E++RLK TW+NP IL E+ERVLGK I+ EY+L +LL PNV+Y++L L G
Sbjct: 472 EAVSREMERLKSTWVNPRILAAAEAERVLGKAIEREYNLLDLLRRPNVSYDSLMGLTGTE 531
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
G+ L I +++Q++IQ++Y GYI RQ +E+ + NENLKLP +LDYM +++LSI
Sbjct: 532 GQALAGPGIEDGPVREQVEIQVKYAGYIARQADEISRQDHNENLKLPADLDYMDVKALSI 591
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLK 1337
E RQKLNK++PET+GQASRISGVTPAAL+LLL++LK G LK
Sbjct: 592 EVRQKLNKHRPETLGQASRISGVTPAALSLLLVHLKKGGLK 632
|
Source: Herbaspirillum seropedicae SmR1 Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134096565|ref|YP_001101640.1| tRNA uridine 5-carboxymethylaminomethyl modification protein GidA [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/583 (64%), Positives = 476/583 (81%), Gaps = 4/583 (0%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG MAIATD++GIQFRILNSSKG AVRATRAQ DRILYKQAIR
Sbjct: 12 KGHLVREV----DAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKQAIRSR 67
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL+++ ++++G VT+ GI+F ++ V+LT GTFL+GKIHIG+ +YS
Sbjct: 68 LENQPNLWLFQQGVDDLLVEGDRVVGAVTQAGIQFRARAVVLTAGTFLDGKIHIGMNNYS 127
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
AGR GD SL+ RLKEL+L GRLKTGTPPRID R+IDFS M EQ GD DP+PVFSV+
Sbjct: 128 AGRAGDPPAISLSARLKELKLPQGRLKTGTPPRIDGRSIDFSVMTEQPGDLDPIPVFSVM 187
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G++ +HP+Q+ C+ITHTNEKTH +IR SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 188 GSVAMHPQQMPCWITHTNEKTHELIRGGLDRSPMYTGMIEGVGPRYCPSIEDKIHRFAGK 247
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
+SH IFLEPEG+ NEYYPNGISTSLPF+ Q+ LVQS+ G+++A+I+RPGYAIEYDYF+P
Sbjct: 248 ESHQIFLEPEGLTTNEYYPNGISTSLPFDVQLALVQSMRGLEHAHILRPGYAIEYDYFDP 307
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK++LETK I GLFFAGQINGTTGYEEAA+QG+LAG+NAAL Q+RD W P RD+AYL
Sbjct: 308 RGLKATLETKVIQGLFFAGQINGTTGYEEAAAQGMLAGINAALQIQERDAWTPRRDEAYL 367
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDLIT+G+ EPYRMFTSRAEYRL+LREDNAD+RLT++G +LGCV QW +FE KR
Sbjct: 368 GVLVDDLITQGVLEPYRMFTSRAEYRLSLREDNADMRLTDVGRQLGCVGDVQWALFETKR 427
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E + +EL+RL+ TW++P IL E+ERVLGK I+ EY+L++LL PNV Y TL SLKG++
Sbjct: 428 EAVARELERLRSTWVSPRILAEAEAERVLGKGIEREYALADLLRRPNVTYETLMSLKGMD 487
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
G++L + + +++Q++IQL+Y GYI RQ EVE++ ENLKLP DYM ++ LSI
Sbjct: 488 GQDLGGPGVAEPAVREQVEIQLKYAGYIDRQAREVERHDHYENLKLPAEFDYMAVKGLSI 547
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLKNF 1339
E RQKL K +PET+GQASRISGVTPAA++L+L++LK G K F
Sbjct: 548 EVRQKLTKQRPETLGQASRISGVTPAAISLMLVHLKKGGFKEF 590
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|398836797|ref|ZP_10594125.1| glucose-inhibited division protein A [Herbaspirillum sp. YR522] gi|398210863|gb|EJM97497.1| glucose-inhibited division protein A [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/580 (65%), Positives = 473/580 (81%), Gaps = 4/580 (0%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG MAIATD++GIQFRILNSSKG AVRATRAQ DRILYKQAIR
Sbjct: 56 KGHLVKEV----DAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKQAIRSR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDL++ ++++G +T+ GIKF + V+LT GTFL+GKIH+GL +Y+
Sbjct: 112 LENQPNLWLFQQAVDDLMVDGDRVVGAITQTGIKFQGRAVVLTAGTFLDGKIHVGLDNYA 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD SL+ RLKEL+L GRLKTGTPPRID R+ID S +EEQ GD DPVPVFSV+
Sbjct: 172 GGRAGDPPAVSLSARLKELKLPQGRLKTGTPPRIDGRSIDLSLLEEQPGDLDPVPVFSVM 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
GN +HP+Q+ C+ITHT +TH+IIR+ SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GNAAMHPRQVPCWITHTTSQTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH I+LEPEG+ +E+YPNGISTSLPF+ Q+ LV+S+ G++NA+I+RPGYAIEYDYF+P
Sbjct: 292 DSHQIYLEPEGLTTHEFYPNGISTSLPFDVQLALVRSMKGLENAHILRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LKSSLET+QI GLFFAGQINGTTGYEEAA+QG+LAG+NAAL +Q R+ W P RD+AYL
Sbjct: 352 RGLKSSLETRQIQGLFFAGQINGTTGYEEAAAQGMLAGINAALQTQGREAWTPRRDEAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL+T+G+QEPYRMFTSRAEYRL+LREDNADLRLTEIG +LGCV QW+ FE+KR
Sbjct: 412 GVLVDDLVTQGVQEPYRMFTSRAEYRLSLREDNADLRLTEIGRELGCVGDAQWEAFERKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E +++E +RLK TW+NP IL E+ERVLGK I+ EY+L +LL PNV Y++L SL G
Sbjct: 472 EAVSRETERLKTTWVNPRILAAAEAERVLGKAIEREYNLLDLLRRPNVTYDSLMSLTGTE 531
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
G+ L I +++Q++IQ++Y GYI RQ E+ + NENLKLP +LDYM++++LSI
Sbjct: 532 GQALAGPGIEDGPVREQVEIQVKYAGYIARQATEISRQDHNENLKLPADLDYMEVKALSI 591
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFL 1336
E RQKLNK+KPET+GQASRISGVTPAAL+LLL++LK G L
Sbjct: 592 EVRQKLNKHKPETLGQASRISGVTPAALSLLLVHLKKGGL 631
|
Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|395760438|ref|ZP_10441107.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Janthinobacterium lividum PAMC 25724] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/580 (65%), Positives = 473/580 (81%), Gaps = 5/580 (0%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG MAIATD+SGIQFRILNSSKG AVRATRAQ DRILYK AIR
Sbjct: 56 KGHLVKEV----DAMGGAMAIATDESGIQFRILNSSKGPAVRATRAQADRILYKAAIRTR 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL+LFQ+ VDDLI++ ++++G VT+IG+KF ++ V+LT GTFL+GKIH+GL +YS
Sbjct: 112 LENQPNLWLFQQAVDDLIVEGDRVVGAVTQIGLKFLARAVVLTAGTFLDGKIHVGLNNYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
AGR GD SL+ RLKEL+L GRLKTGTPPRID RTIDFS M+EQ GD PVPVFSV+
Sbjct: 172 AGRAGDPPAISLSARLKELKLPQGRLKTGTPPRIDGRTIDFSVMQEQAGDLAPVPVFSVM 231
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
GN ++HP+Q+ C++THTN +TH+IIR+ SP+++G IE +GPRYCPSIEDK++RF K
Sbjct: 232 GNTSMHPRQVPCWVTHTNTQTHDIIRAGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFSGK 291
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IFLEPEG+ +E+YPNGISTSLPF+ QI LVQS+ GM+NA+I+RPGYAIEYDYF+P
Sbjct: 292 DSHQIFLEPEGLTTHEFYPNGISTSLPFDVQIALVQSMKGMENAHIMRPGYAIEYDYFDP 351
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK+SLETK + GLFFAGQINGTTGYEEAA+QG+LAGLNAAL +QD+ W+PGR +AYL
Sbjct: 352 RGLKASLETKAVAGLFFAGQINGTTGYEEAAAQGMLAGLNAALLTQDKQAWVPGRSEAYL 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDLIT+G+QEPYRMFTSRAEYRL+LREDNAD+RLTEIG LGCV QW+ FE KR
Sbjct: 412 GVLVDDLITQGVQEPYRMFTSRAEYRLSLREDNADMRLTEIGRTLGCVGDAQWQAFEIKR 471
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E + ELQRL+ TW+NP IL ESER++G+ I+ EYSL++LL PNV Y+TL S+ G+
Sbjct: 472 EAVALELQRLRSTWVNPRILAAAESERIVGQAIEREYSLADLLCRPNVAYDTLMSMTGME 531
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
G+ L + +++Q++IQL+Y GYI RQ E+E+++ ENL LP +Y+ I +LS+
Sbjct: 532 GQALAGPGVEDPAVREQVEIQLKYAGYIERQSKEIERHEHYENLALPVGFNYLDIGALSV 591
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GF 1335
E RQKL+K +PET+GQASRISGVTPAA++LLL++LK GF
Sbjct: 592 EVRQKLDKQRPETLGQASRISGVTPAAISLLLVHLKKRGF 631
|
Source: Janthinobacterium lividum PAMC 25724 Species: Janthinobacterium lividum Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1342 | ||||||
| UNIPROTKB|P0A6U3 | 629 | mnmG "protein involved in a tR | 0.424 | 0.906 | 0.579 | 1.4e-174 | |
| UNIPROTKB|Q8E8A9 | 629 | mnmG "tRNA uridine 5-carboxyme | 0.424 | 0.906 | 0.580 | 8.9e-173 | |
| TIGR_CMR|SO_4758 | 629 | SO_4758 "glucose-inhibited div | 0.424 | 0.906 | 0.580 | 8.9e-173 | |
| UNIPROTKB|Q87TS3 | 630 | mnmG "tRNA uridine 5-carboxyme | 0.414 | 0.882 | 0.589 | 1.7e-171 | |
| UNIPROTKB|Q9KNG4 | 631 | mnmG "tRNA uridine 5-carboxyme | 0.424 | 0.903 | 0.558 | 4.1e-168 | |
| TIGR_CMR|VC_2775 | 631 | VC_2775 "glucose inhibited div | 0.424 | 0.903 | 0.558 | 4.1e-168 | |
| UNIPROTKB|P94613 | 627 | mnmG "tRNA uridine 5-carboxyme | 0.415 | 0.889 | 0.553 | 7.1e-164 | |
| TIGR_CMR|CBU_1924 | 627 | CBU_1924 "glucose inhibited di | 0.415 | 0.889 | 0.553 | 7.1e-164 | |
| UNIPROTKB|Q47U38 | 629 | mnmG "tRNA uridine 5-carboxyme | 0.424 | 0.906 | 0.539 | 1.7e-160 | |
| TIGR_CMR|CPS_5047 | 629 | CPS_5047 "glucose inhibited di | 0.424 | 0.906 | 0.539 | 1.7e-160 |
| UNIPROTKB|P0A6U3 mnmG "protein involved in a tRNA modification pathway" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1696 (602.1 bits), Expect = 1.4e-174, P = 1.4e-174
Identities = 337/582 (57%), Positives = 428/582 (73%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG+MA A D++GIQFRILN+SKG AVRATRAQ DR+LY+QA+R
Sbjct: 56 KGHLVKEV----DALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTA 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL +FQ+ V+DLI++ ++++G VT++G+KF +K V+LT GTFL+GKIHIGL +YS
Sbjct: 112 LENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + L++RL+EL L GRLKTGTPPRID RTIDFS + +Q GD +P+PVFS +
Sbjct: 172 GGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGD-NPMPVFSFM 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
GN + HP+Q+ C+ITHTNEKTH++IRS SP+++G IE +GPRYCPSIEDKV RF +
Sbjct: 231 GNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADR 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
H IFLEPEG+ NE YPNGISTSLPF+ Q+++V+S+ GM+NA I+RPGYAIEYD+F+P
Sbjct: 291 NQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK +LE+K I GLFFAGQINGTTGYEEAA+QGLLAGLNAA S D++ W P R QAYL
Sbjct: 351 RDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYL 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL T G +EPYRMFTSRAEYRL LREDNADLRLTEIG +LG V ++W F +K
Sbjct: 411 GVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKL 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E I +E QRLK TW+ PS E L + E S +LL P + Y LT+L
Sbjct: 471 ENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTP-- 528
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
+ + E +Q++IQ++YEGYI RQ P LDY ++ LS
Sbjct: 529 ----FAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSN 584
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GFLK 1337
E KLN +KP +IGQASRISGVTPAA+++LL++LK G L+
Sbjct: 585 EVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGMLR 626
|
|
| UNIPROTKB|Q8E8A9 mnmG "tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1679 (596.1 bits), Expect = 8.9e-173, P = 8.9e-173
Identities = 338/582 (58%), Positives = 425/582 (73%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+GG MAIATD +GIQFR LNSSKG AVRATRAQ DR LY+Q I+
Sbjct: 56 KGHLVKEI----DALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNI 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
L+NQ NL +FQ+ VDD++++ + ++GVVT++G+ F + V+LT GTFL+GKIHIGL++YS
Sbjct: 112 LQNQANLRIFQQAVDDIVVENDHVVGVVTQMGLAFEASAVVLTAGTFLSGKIHIGLENYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + +LA RL+EL + GRLKTGTPPRID TIDFS+M EQ GD P+PV S +
Sbjct: 172 GGRAGDPPSIALAHRLRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGD-TPLPVMSFM 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G+++ HPKQ+SC+ITHTNEKTH+IIR SP++SG IE IGPRYCPSIEDK++RF K
Sbjct: 231 GDVSHHPKQISCWITHTNEKTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFSDK 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IF+EPEG+ NE YPNGISTSLPF+ Q+ LV+SI GM+NA I+RPGYAIEYDYF+P
Sbjct: 291 SSHQIFIEPEGLTTNEIYPNGISTSLPFDVQLNLVRSIKGMENAEIVRPGYAIEYDYFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK+SLETK I+GLFFAGQINGTTGYEEA +QGLLAG+NA+L Q ++ W P RD+AY+
Sbjct: 351 RDLKNSLETKTINGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYI 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL T G +EPYRMFTSRAEYRL LREDNADLRLT G +LG V +W F +K
Sbjct: 411 GVLVDDLSTLGTKEPYRMFTSRAEYRLLLREDNADLRLTAKGRELGLVDDARWAAFSEKM 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E I ELQRL+ WI+P+ L I E S LL P ++YN L ++G
Sbjct: 471 ESIELELQRLRSQWIHPNSPLVPVLNPHLNTPISREASFEELLRRPEMDYNKLMQIEGF- 529
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
G L + + E Q++IQ++Y GYI RQ P NLDY ++ LS
Sbjct: 530 GPGLADP-LAAE----QVQIQVKYSGYIQRQQEEINKAVRNENTGLPLNLDYKEVPGLSN 584
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GFLK 1337
E KLN +KPETIGQASRISG+TPAA+++LL++LK G L+
Sbjct: 585 EVIAKLNSHKPETIGQASRISGITPAAISILLVHLKKRGLLR 626
|
|
| TIGR_CMR|SO_4758 SO_4758 "glucose-inhibited division protein A" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1679 (596.1 bits), Expect = 8.9e-173, P = 8.9e-173
Identities = 338/582 (58%), Positives = 425/582 (73%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+GG MAIATD +GIQFR LNSSKG AVRATRAQ DR LY+Q I+
Sbjct: 56 KGHLVKEI----DALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNI 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
L+NQ NL +FQ+ VDD++++ + ++GVVT++G+ F + V+LT GTFL+GKIHIGL++YS
Sbjct: 112 LQNQANLRIFQQAVDDIVVENDHVVGVVTQMGLAFEASAVVLTAGTFLSGKIHIGLENYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + +LA RL+EL + GRLKTGTPPRID TIDFS+M EQ GD P+PV S +
Sbjct: 172 GGRAGDPPSIALAHRLRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGD-TPLPVMSFM 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G+++ HPKQ+SC+ITHTNEKTH+IIR SP++SG IE IGPRYCPSIEDK++RF K
Sbjct: 231 GDVSHHPKQISCWITHTNEKTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFSDK 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IF+EPEG+ NE YPNGISTSLPF+ Q+ LV+SI GM+NA I+RPGYAIEYDYF+P
Sbjct: 291 SSHQIFIEPEGLTTNEIYPNGISTSLPFDVQLNLVRSIKGMENAEIVRPGYAIEYDYFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK+SLETK I+GLFFAGQINGTTGYEEA +QGLLAG+NA+L Q ++ W P RD+AY+
Sbjct: 351 RDLKNSLETKTINGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYI 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL T G +EPYRMFTSRAEYRL LREDNADLRLT G +LG V +W F +K
Sbjct: 411 GVLVDDLSTLGTKEPYRMFTSRAEYRLLLREDNADLRLTAKGRELGLVDDARWAAFSEKM 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E I ELQRL+ WI+P+ L I E S LL P ++YN L ++G
Sbjct: 471 ESIELELQRLRSQWIHPNSPLVPVLNPHLNTPISREASFEELLRRPEMDYNKLMQIEGF- 529
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
G L + + E Q++IQ++Y GYI RQ P NLDY ++ LS
Sbjct: 530 GPGLADP-LAAE----QVQIQVKYSGYIQRQQEEINKAVRNENTGLPLNLDYKEVPGLSN 584
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GFLK 1337
E KLN +KPETIGQASRISG+TPAA+++LL++LK G L+
Sbjct: 585 EVIAKLNSHKPETIGQASRISGITPAAISILLVHLKKRGLLR 626
|
|
| UNIPROTKB|Q87TS3 mnmG "tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] | Back alignment and assigned GO terms |
|---|
Score = 1667 (591.9 bits), Expect = 1.7e-171, P = 1.7e-171
Identities = 333/565 (58%), Positives = 414/565 (73%)
Query: 768 LDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 827
+DA+GG MA+ATDK GIQFR+LNS KG AVRATRAQ DR+LYK AIR LENQ NL++FQ
Sbjct: 63 IDALGGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIREILENQPNLWIFQ 122
Query: 828 EEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTS 887
+ DDLI++ +++ GVVT++G++ + +V+LTTGTFL G IHIG+++YS GR GD + +
Sbjct: 123 QACDDLIVEQDQVRGVVTQMGLRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIA 182
Query: 888 LAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLS 947
LA+RL+EL L GRLKTGTPPRID R++DFS M EQ GD P+ V S LG+ HP Q+S
Sbjct: 183 LAQRLRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGD-TPILVMSFLGSKEQHPAQVS 241
Query: 948 CFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEG 1007
C+ITHTN +TH II S SP++SG IE IGPRYCPSIEDK++RF K+SH +F+EPEG
Sbjct: 242 CWITHTNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEG 301
Query: 1008 IVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQ 1067
+ +E YPNGISTSLPF+ Q+++V+SI GM+NA+I+RPGYAIEYDYF+P +LK SLETK
Sbjct: 302 LTTHELYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKV 361
Query: 1068 IHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKG 1127
I GLFFAGQINGTTGYEEA +QGLLAG NAAL +Q RD W P RD+AY+GVLVDDLIT G
Sbjct: 362 IGGLFFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLG 421
Query: 1128 IQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLK 1187
QEPYRMFTSRAEYRL LREDNADLRLTE G +LG V +W F KRE I E QRLK
Sbjct: 422 TQEPYRMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLK 481
Query: 1188 DTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQ 1247
TW+ P G + HEY+L NLLT P ++YN+L +L G G
Sbjct: 482 STWVRPGTQQGDAISAHFGTPLTHEYNLLNLLTRPEIDYNSLIALTG-QG-------CAD 533
Query: 1248 EDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLNKYKP 1307
+ +Q++I+ +Y GYI RQ P ++DY I LS E + KL +P
Sbjct: 534 PLVAEQVEIKTKYAGYIDRQQEEIARLRASEDTRLPEDIDYTGISGLSKEIQSKLGITRP 593
Query: 1308 ETIGQASRISGVTPAALTLLLIYLK 1332
ET+GQASRI GVTPAA++LL+I+LK
Sbjct: 594 ETLGQASRIPGVTPAAISLLMIHLK 618
|
|
| UNIPROTKB|Q9KNG4 mnmG "tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1635 (580.6 bits), Expect = 4.1e-168, P = 4.1e-168
Identities = 325/582 (55%), Positives = 420/582 (72%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG+MA A D +GIQFR LN+SKG AVRATRAQ DR LYK +R
Sbjct: 56 KGHLVKEV----DAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNV 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LEN NL LFQ+ VDD+I++ + I GVVT++G+KF +K V+LT GTFL GKIHIGL++Y+
Sbjct: 112 LENTPNLTLFQQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYA 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + +LA RL+EL RLKTGTPPRID ++DFS +E Q GD +P PVFS +
Sbjct: 172 GGRAGDPPSIALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGD-NPTPVFSFM 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G HP+Q+ C+ITHTNE+TH++IR+ SP+++G IE IGPRYCPSIEDKV RF K
Sbjct: 231 GKREHHPRQIPCYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADK 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IF+EPEG+ E YPNGISTSLPF+ Q+++V+S+ G +NA+I+RPGYAIEYD+F+P
Sbjct: 291 DSHQIFIEPEGLTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK + ETK IHGLFFAGQINGTTGYEEAA+QGL+AGLNA+L+SQD++ W P RDQAY+
Sbjct: 351 RDLKQTYETKYIHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYM 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVL+DDL T G +EPYRMFTSRAEYRL LREDNADLRLTE +LG V +W F +K
Sbjct: 411 GVLIDDLSTMGTKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKI 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
+ + KE QRL++TW+NP+ + + +L + E S +LL P + Y LT+L
Sbjct: 471 DNMAKERQRLQETWMNPNSVGVEQLNTLLKTPMSREASGEDLLRRPEMTYELLTTLPA-- 528
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
+ + + +Q++IQ++Y+GYI RQ P LDY +++ LS
Sbjct: 529 ----FAPALEDAEAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSN 584
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GFLK 1337
E KLN KPETIG ASRISG+TPAA+++LL++LK G LK
Sbjct: 585 EVVLKLNAAKPETIGIASRISGITPAAISILLVHLKKHGMLK 626
|
|
| TIGR_CMR|VC_2775 VC_2775 "glucose inhibited division protein A" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1635 (580.6 bits), Expect = 4.1e-168, P = 4.1e-168
Identities = 325/582 (55%), Positives = 420/582 (72%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG+MA A D +GIQFR LN+SKG AVRATRAQ DR LYK +R
Sbjct: 56 KGHLVKEV----DAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNV 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LEN NL LFQ+ VDD+I++ + I GVVT++G+KF +K V+LT GTFL GKIHIGL++Y+
Sbjct: 112 LENTPNLTLFQQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYA 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + +LA RL+EL RLKTGTPPRID ++DFS +E Q GD +P PVFS +
Sbjct: 172 GGRAGDPPSIALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGD-NPTPVFSFM 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G HP+Q+ C+ITHTNE+TH++IR+ SP+++G IE IGPRYCPSIEDKV RF K
Sbjct: 231 GKREHHPRQIPCYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADK 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IF+EPEG+ E YPNGISTSLPF+ Q+++V+S+ G +NA+I+RPGYAIEYD+F+P
Sbjct: 291 DSHQIFIEPEGLTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK + ETK IHGLFFAGQINGTTGYEEAA+QGL+AGLNA+L+SQD++ W P RDQAY+
Sbjct: 351 RDLKQTYETKYIHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYM 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVL+DDL T G +EPYRMFTSRAEYRL LREDNADLRLTE +LG V +W F +K
Sbjct: 411 GVLIDDLSTMGTKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKI 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
+ + KE QRL++TW+NP+ + + +L + E S +LL P + Y LT+L
Sbjct: 471 DNMAKERQRLQETWMNPNSVGVEQLNTLLKTPMSREASGEDLLRRPEMTYELLTTLPA-- 528
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
+ + + +Q++IQ++Y+GYI RQ P LDY +++ LS
Sbjct: 529 ----FAPALEDAEAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSN 584
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GFLK 1337
E KLN KPETIG ASRISG+TPAA+++LL++LK G LK
Sbjct: 585 EVVLKLNAAKPETIGIASRISGITPAAISILLVHLKKHGMLK 626
|
|
| UNIPROTKB|P94613 mnmG "tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 1595 (566.5 bits), Expect = 7.1e-164, P = 7.1e-164
Identities = 313/565 (55%), Positives = 402/565 (71%)
Query: 768 LDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 827
+DA+GGIMA+A D++GI FR LN+ KG AVRATRAQ DR+LYK AI LENQ +L+LFQ
Sbjct: 64 IDALGGIMALAADQAGIHFRTLNARKGPAVRATRAQADRVLYKAAIHHALENQPHLWLFQ 123
Query: 828 EEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTS 887
+ VDDLII+ N+ GVVT++G+ F++ TVILT GTFL GKIHIG+ Y GR GD +
Sbjct: 124 QGVDDLIIQNNRAAGVVTQMGLAFYAPTVILTVGTFLGGKIHIGMNHYRGGRAGDPPALA 183
Query: 888 LAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLS 947
LA+RL+E+ RLKTGTPPRID RTI++S++ EQ D P+P+ S + P+Q+S
Sbjct: 184 LAERLREMPFRVERLKTGTPPRIDGRTINYSQLIEQPSD-QPLPLMSYWSHGEDRPRQVS 242
Query: 948 CFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEG 1007
CFIT TNEKTH+IIR+ K SP+FSG IE +GPRYCPSIEDK+ RF + SH +FLEPEG
Sbjct: 243 CFITQTNEKTHDIIRNGLKTSPLFSGVIEGVGPRYCPSIEDKIVRFADRNSHQLFLEPEG 302
Query: 1008 IVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQ 1067
+ E YPNG+STSL F+ Q++ + SI G++ +I RPGYAIEYDYF+P +LK SLETK
Sbjct: 303 LNTPEVYPNGVSTSLSFDVQLDFIHSIKGLEKCHITRPGYAIEYDYFDPRDLKPSLETKY 362
Query: 1068 IHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKG 1127
+ GL+FAGQINGTTGYEEAA+QGL+AG+NAAL Q+R PW P RD+AY+GVL+DDL T+G
Sbjct: 363 VPGLYFAGQINGTTGYEEAAAQGLIAGINAALQIQERAPWTPARDEAYIGVLIDDLTTRG 422
Query: 1128 IQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLK 1187
EPYRMFTSRAEYRL LR+DNADLRLTE G LGCV ++W F KK+E I KE QRLK
Sbjct: 423 TNEPYRMFTSRAEYRLLLRQDNADLRLTEKGRDLGCVDDERWNFFVKKKETIEKEQQRLK 482
Query: 1188 DTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQ 1247
I P E + ++ +YS +LL P +NY L ++ + + +
Sbjct: 483 KQRIWPKSTVAKAIESRFQQLLERDYSAMDLLRRPEINYPALMQIEELG------PAVLE 536
Query: 1248 EDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLNKYKP 1307
+ +Q+ IQ +YEGY+ Q P +LDY ++ LS E RQKLN+ KP
Sbjct: 537 PSVAEQIDIQAKYEGYLTHQLAEIARQKKYQTAQIPSSLDYNQVTGLSNEVRQKLNETKP 596
Query: 1308 ETIGQASRISGVTPAALTLLLIYLK 1332
T+GQASRI G+TPAA++LLL++LK
Sbjct: 597 TTLGQASRIPGITPAAISLLLVHLK 621
|
|
| TIGR_CMR|CBU_1924 CBU_1924 "glucose inhibited division protein A" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 1595 (566.5 bits), Expect = 7.1e-164, P = 7.1e-164
Identities = 313/565 (55%), Positives = 402/565 (71%)
Query: 768 LDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 827
+DA+GGIMA+A D++GI FR LN+ KG AVRATRAQ DR+LYK AI LENQ +L+LFQ
Sbjct: 64 IDALGGIMALAADQAGIHFRTLNARKGPAVRATRAQADRVLYKAAIHHALENQPHLWLFQ 123
Query: 828 EEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTS 887
+ VDDLII+ N+ GVVT++G+ F++ TVILT GTFL GKIHIG+ Y GR GD +
Sbjct: 124 QGVDDLIIQNNRAAGVVTQMGLAFYAPTVILTVGTFLGGKIHIGMNHYRGGRAGDPPALA 183
Query: 888 LAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLS 947
LA+RL+E+ RLKTGTPPRID RTI++S++ EQ D P+P+ S + P+Q+S
Sbjct: 184 LAERLREMPFRVERLKTGTPPRIDGRTINYSQLIEQPSD-QPLPLMSYWSHGEDRPRQVS 242
Query: 948 CFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEG 1007
CFIT TNEKTH+IIR+ K SP+FSG IE +GPRYCPSIEDK+ RF + SH +FLEPEG
Sbjct: 243 CFITQTNEKTHDIIRNGLKTSPLFSGVIEGVGPRYCPSIEDKIVRFADRNSHQLFLEPEG 302
Query: 1008 IVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQ 1067
+ E YPNG+STSL F+ Q++ + SI G++ +I RPGYAIEYDYF+P +LK SLETK
Sbjct: 303 LNTPEVYPNGVSTSLSFDVQLDFIHSIKGLEKCHITRPGYAIEYDYFDPRDLKPSLETKY 362
Query: 1068 IHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKG 1127
+ GL+FAGQINGTTGYEEAA+QGL+AG+NAAL Q+R PW P RD+AY+GVL+DDL T+G
Sbjct: 363 VPGLYFAGQINGTTGYEEAAAQGLIAGINAALQIQERAPWTPARDEAYIGVLIDDLTTRG 422
Query: 1128 IQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLK 1187
EPYRMFTSRAEYRL LR+DNADLRLTE G LGCV ++W F KK+E I KE QRLK
Sbjct: 423 TNEPYRMFTSRAEYRLLLRQDNADLRLTEKGRDLGCVDDERWNFFVKKKETIEKEQQRLK 482
Query: 1188 DTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQ 1247
I P E + ++ +YS +LL P +NY L ++ + + +
Sbjct: 483 KQRIWPKSTVAKAIESRFQQLLERDYSAMDLLRRPEINYPALMQIEELG------PAVLE 536
Query: 1248 EDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLNKYKP 1307
+ +Q+ IQ +YEGY+ Q P +LDY ++ LS E RQKLN+ KP
Sbjct: 537 PSVAEQIDIQAKYEGYLTHQLAEIARQKKYQTAQIPSSLDYNQVTGLSNEVRQKLNETKP 596
Query: 1308 ETIGQASRISGVTPAALTLLLIYLK 1332
T+GQASRI G+TPAA++LLL++LK
Sbjct: 597 TTLGQASRIPGITPAAISLLLVHLK 621
|
|
| UNIPROTKB|Q47U38 mnmG "tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1563 (555.3 bits), Expect = 1.7e-160, P = 1.7e-160
Identities = 314/582 (53%), Positives = 405/582 (69%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+GG+MA A D S IQFR LNSSKG AVRATRAQ DRILY+ +R
Sbjct: 56 KGHLVKEI----DALGGLMATAIDHSAIQFRTLNSSKGPAVRATRAQADRILYRNYVRNT 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL +FQ+ DDLI++ ++++GV T++G+KF K+V+LT GTFL+G IHIGL +Y
Sbjct: 112 LENQENLTIFQQPCDDLILENDRVVGVSTQMGLKFKGKSVVLTVGTFLSGLIHIGLNNYQ 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD ++ +LA +++++ RLKTGTPPR+D R++DFS MEEQ GD P PVFS +
Sbjct: 172 GGRAGDPASVNLAAKMRDMPFRMDRLKTGTPPRLDARSLDFSVMEEQAGD-TPSPVFSFM 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G+ HP+Q+SCFITHTNE+TH IR SP+++G IE +GPRYCPSIEDK+ RF K
Sbjct: 231 GSQADHPEQISCFITHTNEQTHQHIRDGLDRSPMYTGVIEGVGPRYCPSIEDKITRFADK 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IF+EPEG+ +E YPNGISTSLPF+ Q+ LV+SI G +NA I RPGYAIEYDYF+P
Sbjct: 291 SSHQIFVEPEGLTTHEVYPNGISTSLPFDVQMNLVRSIKGFENAFITRPGYAIEYDYFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK SLE+K + L+FAGQINGTTGYEEA +QGL+AG NAA ++RD + GRDQAY+
Sbjct: 351 RDLKQSLESKFVQNLYFAGQINGTTGYEEAGAQGLIAGANAANRVKERDEFTLGRDQAYM 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVL+DDL T G +EPYRMFTSRAEYRL LREDNAD+RLTE G K+G V +W+ F +K
Sbjct: 411 GVLIDDLATLGTKEPYRMFTSRAEYRLLLREDNADIRLTEQGRKIGLVGDTRWQRFNEKM 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E + E QRL+ TW+ + +L + E SL +L+ P VNY L ++G+
Sbjct: 471 ENVELERQRLRSTWVQKDHTKIDQINALLKTPMSKEASLEDLIRRPEVNYTDLMKIEGLG 530
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
I +Q++IQ +Y GYI RQ P + DY +I LS
Sbjct: 531 ------PAIEDSQASEQIEIQTKYAGYIDRQLDEIAKKKRNEDTKIPRDFDYQQISGLSN 584
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GFLK 1337
E KL PETIG+ASRISG+TPAA++LLL+YLK G L+
Sbjct: 585 EVVAKLKDACPETIGKASRISGITPAAISLLLVYLKKHGLLR 626
|
|
| TIGR_CMR|CPS_5047 CPS_5047 "glucose inhibited division protein A" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1563 (555.3 bits), Expect = 1.7e-160, P = 1.7e-160
Identities = 314/582 (53%), Positives = 405/582 (69%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+GG+MA A D S IQFR LNSSKG AVRATRAQ DRILY+ +R
Sbjct: 56 KGHLVKEI----DALGGLMATAIDHSAIQFRTLNSSKGPAVRATRAQADRILYRNYVRNT 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL +FQ+ DDLI++ ++++GV T++G+KF K+V+LT GTFL+G IHIGL +Y
Sbjct: 112 LENQENLTIFQQPCDDLILENDRVVGVSTQMGLKFKGKSVVLTVGTFLSGLIHIGLNNYQ 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD ++ +LA +++++ RLKTGTPPR+D R++DFS MEEQ GD P PVFS +
Sbjct: 172 GGRAGDPASVNLAAKMRDMPFRMDRLKTGTPPRLDARSLDFSVMEEQAGD-TPSPVFSFM 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G+ HP+Q+SCFITHTNE+TH IR SP+++G IE +GPRYCPSIEDK+ RF K
Sbjct: 231 GSQADHPEQISCFITHTNEQTHQHIRDGLDRSPMYTGVIEGVGPRYCPSIEDKITRFADK 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IF+EPEG+ +E YPNGISTSLPF+ Q+ LV+SI G +NA I RPGYAIEYDYF+P
Sbjct: 291 SSHQIFVEPEGLTTHEVYPNGISTSLPFDVQMNLVRSIKGFENAFITRPGYAIEYDYFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK SLE+K + L+FAGQINGTTGYEEA +QGL+AG NAA ++RD + GRDQAY+
Sbjct: 351 RDLKQSLESKFVQNLYFAGQINGTTGYEEAGAQGLIAGANAANRVKERDEFTLGRDQAYM 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVL+DDL T G +EPYRMFTSRAEYRL LREDNAD+RLTE G K+G V +W+ F +K
Sbjct: 411 GVLIDDLATLGTKEPYRMFTSRAEYRLLLREDNADIRLTEQGRKIGLVGDTRWQRFNEKM 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E + E QRL+ TW+ + +L + E SL +L+ P VNY L ++G+
Sbjct: 471 ENVELERQRLRSTWVQKDHTKIDQINALLKTPMSKEASLEDLIRRPEVNYTDLMKIEGLG 530
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
I +Q++IQ +Y GYI RQ P + DY +I LS
Sbjct: 531 ------PAIEDSQASEQIEIQTKYAGYIDRQLDEIAKKKRNEDTKIPRDFDYQQISGLSN 584
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GFLK 1337
E KL PETIG+ASRISG+TPAA++LLL+YLK G L+
Sbjct: 585 EVVAKLKDACPETIGKASRISGITPAAISLLLVYLKKHGLLR 626
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q2STD7 | MNMG_BURTA | No assigned EC number | 0.6116 | 0.4239 | 0.8660 | yes | N/A |
| A9AJF1 | MNMG_BURM1 | No assigned EC number | 0.6183 | 0.4262 | 0.8719 | yes | N/A |
| A3NF54 | MNMG_BURP6 | No assigned EC number | 0.6113 | 0.4262 | 0.8706 | yes | N/A |
| Q8XU65 | MNMG_RALSO | No assigned EC number | 0.6010 | 0.4307 | 0.8933 | yes | N/A |
| B1YQK2 | MNMG_BURA4 | No assigned EC number | 0.6217 | 0.4262 | 0.8719 | yes | N/A |
| Q0BJM8 | MNMG_BURCM | No assigned EC number | 0.6217 | 0.4262 | 0.8719 | yes | N/A |
| A3P104 | MNMG_BURP0 | No assigned EC number | 0.6113 | 0.4262 | 0.8706 | yes | N/A |
| Q7WRF1 | MNMG_BORBR | No assigned EC number | 0.6135 | 0.4262 | 0.8951 | yes | N/A |
| Q12HF2 | MNMG_POLSJ | No assigned EC number | 0.5980 | 0.4299 | 0.8573 | yes | N/A |
| B4E581 | MNMG_BURCJ | No assigned EC number | 0.6217 | 0.4262 | 0.8719 | yes | N/A |
| Q3JXU7 | MNMG_BURP1 | No assigned EC number | 0.6096 | 0.4262 | 0.8706 | yes | N/A |
| A9IJ48 | MNMG_BORPD | No assigned EC number | 0.6169 | 0.4262 | 0.8951 | yes | N/A |
| Q1LHJ8 | MNMG_RALME | No assigned EC number | 0.6127 | 0.4247 | 0.8715 | yes | N/A |
| Q9K1G0 | MNMG_NEIMB | No assigned EC number | 0.6200 | 0.4239 | 0.9060 | yes | N/A |
| Q2Y5B4 | MNMG_NITMU | No assigned EC number | 0.6109 | 0.4284 | 0.9098 | yes | N/A |
| A1TI78 | MNMG_ACIAC | No assigned EC number | 0.6016 | 0.4314 | 0.8839 | yes | N/A |
| B9M9W3 | MNMG_ACIET | No assigned EC number | 0.6086 | 0.4284 | 0.8751 | yes | N/A |
| A1KRM5 | MNMG_NEIMF | No assigned EC number | 0.6165 | 0.4239 | 0.9060 | yes | N/A |
| Q21QL5 | MNMG_RHOFD | No assigned EC number | 0.6003 | 0.4314 | 0.8527 | yes | N/A |
| A1VIB1 | MNMG_POLNA | No assigned EC number | 0.5921 | 0.4284 | 0.8620 | yes | N/A |
| Q9JX41 | MNMG_NEIMA | No assigned EC number | 0.6165 | 0.4239 | 0.9060 | yes | N/A |
| A4GAI2 | MNMG_HERAR | No assigned EC number | 0.6466 | 0.4314 | 0.8976 | yes | N/A |
| Q46VW9 | MNMG_CUPPJ | No assigned EC number | 0.6127 | 0.4247 | 0.8823 | yes | N/A |
| A1V8U3 | MNMG_BURMS | No assigned EC number | 0.6113 | 0.4262 | 0.8706 | yes | N/A |
| C5CW10 | MNMG_VARPS | No assigned EC number | 0.6139 | 0.4292 | 0.8834 | yes | N/A |
| A0K2X0 | MNMG_BURCH | No assigned EC number | 0.6217 | 0.4262 | 0.8719 | yes | N/A |
| B2JJL1 | MNMG_BURP8 | No assigned EC number | 0.6168 | 0.4284 | 0.8819 | yes | N/A |
| Q0K5L6 | MNMG_CUPNH | No assigned EC number | 0.6127 | 0.4247 | 0.8742 | yes | N/A |
| Q7W0T0 | MNMG_BORPE | No assigned EC number | 0.6117 | 0.4262 | 0.8951 | yes | N/A |
| Q39KY9 | MNMG_BURS3 | No assigned EC number | 0.6200 | 0.4262 | 0.8719 | yes | N/A |
| Q478A2 | MNMG_DECAR | No assigned EC number | 0.6072 | 0.4195 | 0.8964 | yes | N/A |
| Q7W2I1 | MNMG_BORPA | No assigned EC number | 0.6100 | 0.4262 | 0.8951 | yes | N/A |
| Q1BR97 | MNMG_BURCA | No assigned EC number | 0.6217 | 0.4262 | 0.8719 | yes | N/A |
| B1K1K2 | MNMG_BURCC | No assigned EC number | 0.6217 | 0.4262 | 0.8719 | yes | N/A |
| A1W207 | MNMG_ACISJ | No assigned EC number | 0.6046 | 0.4284 | 0.8698 | yes | N/A |
| B1XYL1 | MNMG_LEPCP | No assigned EC number | 0.5863 | 0.4314 | 0.8452 | yes | N/A |
| A3MQI7 | MNMG_BURM7 | No assigned EC number | 0.6113 | 0.4262 | 0.8706 | yes | N/A |
| A6T482 | MNMG_JANMA | No assigned EC number | 0.6569 | 0.4314 | 0.8976 | yes | N/A |
| A9M3R4 | MNMG_NEIM0 | No assigned EC number | 0.6183 | 0.4239 | 0.9060 | yes | N/A |
| A9BQJ1 | MNMG_DELAS | No assigned EC number | 0.6053 | 0.4284 | 0.8725 | yes | N/A |
| A1WGT2 | MNMG_VEREI | No assigned EC number | 0.5906 | 0.4307 | 0.8784 | yes | N/A |
| Q13SP0 | MNMG_BURXL | No assigned EC number | 0.6020 | 0.4329 | 0.8911 | yes | N/A |
| Q2L2T3 | MNMG_BORA1 | No assigned EC number | 0.6135 | 0.4262 | 0.8979 | yes | N/A |
| B2T7L1 | MNMG_BURPP | No assigned EC number | 0.6037 | 0.4329 | 0.8911 | yes | N/A |
| A4JA22 | MNMG_BURVG | No assigned EC number | 0.6200 | 0.4262 | 0.8719 | yes | N/A |
| Q7P0A6 | MNMG_CHRVO | No assigned EC number | 0.6017 | 0.4247 | 0.9018 | yes | N/A |
| B2UGW0 | MNMG_RALPJ | No assigned EC number | 0.6044 | 0.4307 | 0.8906 | yes | N/A |
| A2S6L0 | MNMG_BURM9 | No assigned EC number | 0.6113 | 0.4262 | 0.8706 | yes | N/A |
| Q62FS8 | MNMG_BURMA | No assigned EC number | 0.6113 | 0.4262 | 0.8706 | yes | N/A |
| Q63PG8 | MNMG_BURPS | No assigned EC number | 0.6131 | 0.4262 | 0.8706 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.2 | 0.691 |
| 3rd Layer | 2.7.7 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.7.7.7 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.1.2.1 | 0.737 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1342 | |||
| PRK05192 | 618 | PRK05192, PRK05192, tRNA uridine 5-carboxymethylam | 0.0 | |
| COG0445 | 621 | COG0445, GidA, Flavin-dependent tRNA uridine 5-car | 0.0 | |
| TIGR00136 | 617 | TIGR00136, gidA, glucose-inhibited division protei | 0.0 | |
| PRK00011 | 416 | PRK00011, glyA, serine hydroxymethyltransferase; R | 0.0 | |
| COG0112 | 413 | COG0112, GlyA, Glycine/serine hydroxymethyltransfe | 0.0 | |
| PRK13034 | 416 | PRK13034, PRK13034, serine hydroxymethyltransferas | 0.0 | |
| pfam00464 | 380 | pfam00464, SHMT, Serine hydroxymethyltransferase | 0.0 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 0.0 | |
| cd00378 | 402 | cd00378, SHMT, Serine-glycine hydroxymethyltransfe | 0.0 | |
| PRK14951 | 618 | PRK14951, PRK14951, DNA polymerase III subunits ga | 0.0 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 1e-180 | |
| PRK14969 | 527 | PRK14969, PRK14969, DNA polymerase III subunits ga | 1e-178 | |
| pfam01134 | 391 | pfam01134, GIDA, Glucose inhibited division protei | 1e-177 | |
| PTZ00094 | 452 | PTZ00094, PTZ00094, serine hydroxymethyltransferas | 1e-166 | |
| PRK07994 | 647 | PRK07994, PRK07994, DNA polymerase III subunits ga | 1e-161 | |
| TIGR02397 | 355 | TIGR02397, dnaX_nterm, DNA polymerase III, subunit | 1e-146 | |
| PLN03226 | 475 | PLN03226, PLN03226, serine hydroxymethyltransferas | 1e-144 | |
| PRK13580 | 493 | PRK13580, PRK13580, serine hydroxymethyltransferas | 1e-140 | |
| PRK08691 | 709 | PRK08691, PRK08691, DNA polymerase III subunits ga | 1e-137 | |
| COG2812 | 515 | COG2812, DnaX, DNA polymerase III, gamma/tau subun | 1e-130 | |
| PRK14949 | 944 | PRK14949, PRK14949, DNA polymerase III subunits ga | 1e-125 | |
| PRK14960 | 702 | PRK14960, PRK14960, DNA polymerase III subunits ga | 1e-114 | |
| PRK14961 | 363 | PRK14961, PRK14961, DNA polymerase III subunits ga | 1e-114 | |
| PRK05563 | 559 | PRK05563, PRK05563, DNA polymerase III subunits ga | 1e-114 | |
| PRK09111 | 598 | PRK09111, PRK09111, DNA polymerase III subunits ga | 1e-111 | |
| PRK14958 | 509 | PRK14958, PRK14958, DNA polymerase III subunits ga | 1e-109 | |
| PLN02271 | 586 | PLN02271, PLN02271, serine hydroxymethyltransferas | 1e-106 | |
| PRK08451 | 535 | PRK08451, PRK08451, DNA polymerase III subunits ga | 1e-104 | |
| PRK14957 | 546 | PRK14957, PRK14957, DNA polymerase III subunits ga | 3e-96 | |
| PRK14965 | 576 | PRK14965, PRK14965, DNA polymerase III subunits ga | 3e-96 | |
| PRK14953 | 486 | PRK14953, PRK14953, DNA polymerase III subunits ga | 1e-88 | |
| PRK14962 | 472 | PRK14962, PRK14962, DNA polymerase III subunits ga | 1e-84 | |
| PRK14948 | 620 | PRK14948, PRK14948, DNA polymerase III subunits ga | 3e-84 | |
| PRK06305 | 451 | PRK06305, PRK06305, DNA polymerase III subunits ga | 6e-83 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 2e-82 | |
| PRK14964 | 491 | PRK14964, PRK14964, DNA polymerase III subunits ga | 2e-81 | |
| PRK14971 | 614 | PRK14971, PRK14971, DNA polymerase III subunits ga | 4e-81 | |
| PRK06647 | 563 | PRK06647, PRK06647, DNA polymerase III subunits ga | 8e-78 | |
| PRK07133 | 725 | PRK07133, PRK07133, DNA polymerase III subunits ga | 5e-76 | |
| PRK14955 | 397 | PRK14955, PRK14955, DNA polymerase III subunits ga | 5e-76 | |
| PRK05896 | 605 | PRK05896, PRK05896, DNA polymerase III subunits ga | 3e-73 | |
| PRK14959 | 624 | PRK14959, PRK14959, DNA polymerase III subunits ga | 3e-73 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 2e-72 | |
| PRK14970 | 367 | PRK14970, PRK14970, DNA polymerase III subunits ga | 3e-72 | |
| PRK14954 | 620 | PRK14954, PRK14954, DNA polymerase III subunits ga | 5e-72 | |
| PRK06645 | 507 | PRK06645, PRK06645, DNA polymerase III subunits ga | 1e-70 | |
| PRK14963 | 504 | PRK14963, PRK14963, DNA polymerase III subunits ga | 1e-69 | |
| PRK14956 | 484 | PRK14956, PRK14956, DNA polymerase III subunits ga | 2e-65 | |
| PRK14952 | 584 | PRK14952, PRK14952, DNA polymerase III subunits ga | 6e-65 | |
| pfam13177 | 161 | pfam13177, DNA_pol3_delta2, DNA polymerase III, de | 1e-38 | |
| TIGR00678 | 188 | TIGR00678, holB, DNA polymerase III, delta' subuni | 3e-37 | |
| pfam13932 | 72 | pfam13932, GIDA_assoc_3, GidA associated domain 3 | 2e-29 | |
| PRK08058 | 329 | PRK08058, PRK08058, DNA polymerase III subunit del | 3e-24 | |
| PRK12402 | 337 | PRK12402, PRK12402, replication factor C small sub | 5e-20 | |
| PRK00440 | 319 | PRK00440, rfc, replication factor C small subunit; | 1e-19 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 2e-19 | |
| PRK07940 | 394 | PRK07940, PRK07940, DNA polymerase III subunit del | 2e-18 | |
| pfam12169 | 143 | pfam12169, DNA_pol3_gamma3, DNA polymerase III sub | 3e-17 | |
| PRK08699 | 325 | PRK08699, PRK08699, DNA polymerase III subunit del | 7e-16 | |
| PRK05707 | 328 | PRK05707, PRK05707, DNA polymerase III subunit del | 8e-16 | |
| COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subu | 9e-15 | |
| PRK07399 | 314 | PRK07399, PRK07399, DNA polymerase III subunit del | 9e-15 | |
| COG1206 | 439 | COG1206, Gid, NAD(FAD)-utilizing enzyme possibly i | 1e-14 | |
| PRK13342 | 413 | PRK13342, PRK13342, recombination factor protein R | 1e-14 | |
| PRK06964 | 342 | PRK06964, PRK06964, DNA polymerase III subunit del | 9e-14 | |
| PRK06871 | 325 | PRK06871, PRK06871, DNA polymerase III subunit del | 1e-13 | |
| PRK09112 | 351 | PRK09112, PRK09112, DNA polymerase III subunit del | 2e-13 | |
| PRK05335 | 436 | PRK05335, PRK05335, tRNA (uracil-5-)-methyltransfe | 8e-13 | |
| PRK05917 | 290 | PRK05917, PRK05917, DNA polymerase III subunit del | 1e-12 | |
| PRK07993 | 334 | PRK07993, PRK07993, DNA polymerase III subunit del | 1e-11 | |
| PRK04132 | 846 | PRK04132, PRK04132, replication factor C small sub | 3e-11 | |
| PRK05564 | 313 | PRK05564, PRK05564, DNA polymerase III subunit del | 2e-10 | |
| TIGR00137 | 433 | TIGR00137, gid_trmFO, tRNA:m(5)U-54 methyltransfer | 4e-10 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 3e-09 | |
| PRK07276 | 290 | PRK07276, PRK07276, DNA polymerase III subunit del | 1e-08 | |
| PRK06090 | 319 | PRK06090, PRK06090, DNA polymerase III subunit del | 2e-08 | |
| PRK07471 | 365 | PRK07471, PRK07471, DNA polymerase III subunit del | 9e-08 | |
| PLN03025 | 319 | PLN03025, PLN03025, replication factor C subunit; | 2e-07 | |
| PRK08769 | 319 | PRK08769, PRK08769, DNA polymerase III subunit del | 3e-07 | |
| cd06454 | 349 | cd06454, KBL_like, KBL_like; this family belongs t | 5e-07 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 6e-07 | |
| PRK08485 | 206 | PRK08485, PRK08485, DNA polymerase III subunit del | 8e-07 | |
| PRK05818 | 261 | PRK05818, PRK05818, DNA polymerase III subunit del | 2e-06 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 2e-06 | |
| PRK07132 | 299 | PRK07132, PRK07132, DNA polymerase III subunit del | 3e-06 | |
| PHA02544 | 316 | PHA02544, 44, clamp loader, small subunit; Provisi | 2e-05 | |
| PRK06581 | 263 | PRK06581, PRK06581, DNA polymerase III subunit del | 6e-05 | |
| TIGR02902 | 531 | TIGR02902, spore_lonB, ATP-dependent protease LonB | 9e-05 | |
| TIGR03812 | 373 | TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase | 1e-04 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 6e-04 | |
| COG0470 | 230 | COG0470, HolB, ATPase involved in DNA replication | 0.001 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 0.001 | |
| COG0156 | 388 | COG0156, BioF, 7-keto-8-aminopelargonate synthetas | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| COG2255 | 332 | COG2255, RuvB, Holliday junction resolvasome, heli | 0.004 | |
| pfam06068 | 395 | pfam06068, TIP49, TIP49 C-terminus | 0.004 |
| >gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Score = 971 bits (2513), Expect = 0.0
Identities = 334/576 (57%), Positives = 426/576 (73%), Gaps = 19/576 (3%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+GG M A DK+GIQFR+LN+SKG AVRA RAQ DR LY+ A+R
Sbjct: 54 KGHLVREI----DALGGEMGKAIDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREI 109
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL LFQ EV+DLI++ +++GVVT+ G++F +K V+LTTGTFL GKIHIG K+YS
Sbjct: 110 LENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFLRGKIHIGEKNYS 169
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR G+ + L++ L+EL GRLKTGTPPRID R+IDFSK+EEQ GD DP P FS +
Sbjct: 170 GGRAGEPPSIGLSESLRELGFELGRLKTGTPPRIDGRSIDFSKLEEQPGD-DPPPPFSFM 228
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
+HP Q+ C+IT+TNE+TH IIR SP++SG IE +GPRYCPSIEDK+ RF K
Sbjct: 229 -TEKIHPPQVPCYITYTNEETHEIIRENLHRSPMYSGVIEGVGPRYCPSIEDKIVRFADK 287
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
H IFLEPEG+ NE YPNGISTSLP + Q+E+++SI G++NA I+RPGYAIEYDY +P
Sbjct: 288 DRHQIFLEPEGLDTNEVYPNGISTSLPEDVQLEMLRSIPGLENAEILRPGYAIEYDYVDP 347
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK +LETK+I GLFFAGQINGTTGYEEAA+QGL+AG+NAAL Q +P+I R +AY+
Sbjct: 348 RQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQ-GEPFILKRSEAYI 406
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVL+DDL+TKG +EPYRMFTSRAEYRL LREDNADLRLTE G++LG V ++W FE+K+
Sbjct: 407 GVLIDDLVTKGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGYELGLVDDERWARFEEKK 466
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E I +E++RLK T + P LN + G +K E SL +LL P + Y L L
Sbjct: 467 EAIEEEIERLKSTRVTPDELN-----ELGGDPLKREVSLLDLLRRPEITYEDLAKLDPEL 521
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
++ +Q++I+++YEGYI RQ E+EK K EN K+P ++DY I LS
Sbjct: 522 -------ADLDPEVAEQVEIEIKYEGYIERQQEEIEKLKRLENKKIPEDIDYDAISGLSN 574
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
EAR+KLNK +PETIGQASRISGVTPA +++LL+YLK
Sbjct: 575 EAREKLNKIRPETIGQASRISGVTPADISILLVYLK 610
|
Length = 618 |
| >gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Score = 874 bits (2262), Expect = 0.0
Identities = 334/582 (57%), Positives = 434/582 (74%), Gaps = 16/582 (2%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+GG+M A DK+GIQFR+LNSSKG AVRA RAQ D+ LY++A++
Sbjct: 54 KGHLVREI----DALGGLMGKAADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNE 109
Query: 817 LENQLNLYLFQEEVDDLIIKTNK-ILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSY 875
LENQ NL+L Q EV+DLI++ + ++GVVT G +F +K V+LTTGTFL GKIHIG +Y
Sbjct: 110 LENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRGKIHIGDTNY 169
Query: 876 SAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSV 935
SAGR G+ + L+ RL+EL GRLKTGTPPRID R+IDFSK+EEQ GD +P PVFS
Sbjct: 170 SAGRLGEPPSIGLSDRLRELGFKLGRLKTGTPPRIDARSIDFSKLEEQPGD-EPPPVFSF 228
Query: 936 LGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPK 995
HP Q+ C+IT+TNEKTH IIR SP++SG+IE +GPRYCPSIEDK+ RF
Sbjct: 229 TTEP--HPPQIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFAD 286
Query: 996 KKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN 1055
K+ H IFLEPEG+ +E YPNG+STSLP + Q ++++SI G++NA I+RPGYAIEYDY +
Sbjct: 287 KERHQIFLEPEGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRPGYAIEYDYVD 346
Query: 1056 PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAY 1115
P LK +LETK+I GLFFAGQINGTTGYEEAA+QGL+AG+NAAL Q ++P+I RD+AY
Sbjct: 347 PRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQGKEPFILRRDEAY 406
Query: 1116 LGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKK 1175
+GVL+DDL+TKG EPYRMFTSRAEYRL LREDNADLRLTEIG +LG V ++++ F KK
Sbjct: 407 IGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNADLRLTEIGRELGLVDDERYERFLKK 466
Query: 1176 REIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGI 1235
+E I +E++RLK TW+ PS + E + G+ +K SL +LL P ++Y+ L SL
Sbjct: 467 KENIEEEIERLKSTWVTPSEVAK-ELLALGGQPLKRRSSLYDLLRRPEISYDDLISLFP- 524
Query: 1236 NGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLS 1295
++ +Q++I+++YEGYI RQ ++EK K EN K+P ++DY KI LS
Sbjct: 525 ------LPADLDAEVLEQVEIEIKYEGYIKRQQEQIEKLKRLENTKIPEDIDYDKIPGLS 578
Query: 1296 IEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLK 1337
EAR+KLNK +P TIGQASRISGVTPA +++LL+YLK G K
Sbjct: 579 NEAREKLNKIRPLTIGQASRISGVTPADISILLVYLKKGKNK 620
|
Length = 621 |
| >gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A | Back alignment and domain information |
|---|
Score = 779 bits (2013), Expect = 0.0
Identities = 332/577 (57%), Positives = 432/577 (74%), Gaps = 13/577 (2%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG L+ + DA+GG+M A DK+G+QFR+LNSSKG AVRATRAQ+D++LY++A+R
Sbjct: 50 KGILVKEI----DALGGLMGKAADKAGLQFRVLNSSKGPAVRATRAQIDKVLYRKAMRNA 105
Query: 817 LENQLNLYLFQEEVDDLIIKTN-KILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSY 875
LENQ NL LFQ EV+DLI++ N +I GVVT+ G+KF +K VI+TTGTFL GKIHIG KSY
Sbjct: 106 LENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLRGKIHIGDKSY 165
Query: 876 SAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSV 935
SAGR G+ + L+ L+EL GRLKTGTPPRIDKR+IDFSK+E Q GD +P P FS
Sbjct: 166 SAGRAGEQPSIGLSTTLRELGFKVGRLKTGTPPRIDKRSIDFSKLEVQHGD-NPPPAFSF 224
Query: 936 LGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPK 995
+ L +QL C++THTN KTH++IRS SP++SG IE GPRYCPSIEDKV RF
Sbjct: 225 MNKNFLPLQQLPCYLTHTNPKTHDLIRSNLHRSPMYSGVIEGNGPRYCPSIEDKVVRFAD 284
Query: 996 KKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN 1055
K+ H IFLEPEG+ +E YPNG+STSLP + Q+++V+SI G++NA I+RPGYAIEYD+F+
Sbjct: 285 KERHQIFLEPEGLNSDEIYPNGLSTSLPEDVQLQIVRSIPGLENAEILRPGYAIEYDFFD 344
Query: 1056 PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAY 1115
P LK +LETK I GLFFAGQINGTTGYEEAA+QGL+AG+NAAL Q+++P+I R +AY
Sbjct: 345 PRQLKPTLETKLIQGLFFAGQINGTTGYEEAAAQGLMAGINAALKLQNKEPFILKRSEAY 404
Query: 1116 LGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKK 1175
+GVL+DDL+TKG +EPYRMFTSRAEYRL LREDNAD RLTEIG +LG + +++ F KK
Sbjct: 405 IGVLIDDLVTKGTKEPYRMFTSRAEYRLLLREDNADFRLTEIGRELGLIDDERYARFLKK 464
Query: 1176 REIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGI 1235
+E I +E+QRLK TW+ PS E + L +K E S +LL P +N LT L
Sbjct: 465 KENIEEEIQRLKSTWLTPSKEVKEELKNHLQSPLKREASGEDLLRRPEMNLEKLTKL--- 521
Query: 1236 NGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLS 1295
E++ +Q++IQ++YEGYI +Q +E++K EN+K+P DY K+ LS
Sbjct: 522 ----TPFLPALDEEVLEQVEIQIKYEGYIKKQQDEIKKLDRLENVKIPATFDYRKVPGLS 577
Query: 1296 IEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
EAR+KL+K++P +IGQASRISG+TPA +++LL+YLK
Sbjct: 578 TEAREKLSKFRPLSIGQASRISGITPADISILLVYLK 614
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137) [Protein synthesis, tRNA and rRNA base modification]. Length = 617 |
| >gnl|CDD|234571 PRK00011, glyA, serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 719 bits (1859), Expect = 0.0
Identities = 239/379 (63%), Positives = 306/379 (80%), Gaps = 2/379 (0%)
Query: 3 IKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGK 62
+NL++ DP+I + I +E +RQ +IELIASEN+ S AVMEAQG++LTNKYAEGYPGK
Sbjct: 1 FFMDNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGK 60
Query: 63 RYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQ 122
RYYGGC+++D++E++AI+R K++F AE ANVQPHSGSQAN AV+F++L PGDTI+GM L
Sbjct: 61 RYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLA 120
Query: 123 EGGHLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYI 181
GGHLTHG +N SGK +N + YG++++ IDY +VE LA ++KPKLIIAGASAYS+ I
Sbjct: 121 HGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASAYSRPI 180
Query: 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILM 241
DF+RF IA + +Y MVDMAH AGL+AAG +P+PVP AD +T+TTHK+LRGPRGG IL
Sbjct: 181 DFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILT 240
Query: 242 KKK-YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300
+ K INSAVFPGIQGGPLMHVIAAKAVAFKE L+P+FK Y +QVVKNAK L++ L
Sbjct: 241 NDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALA 300
Query: 301 QRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIR 360
+RG R+VSGGT +H++LVDLR+K +TGK AE+ LE ANI NKN++P DP P+ TSGIR
Sbjct: 301 ERGFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIR 360
Query: 361 LGSSAITTRGFSELEIIKV 379
+G+ AITTRGF E E+ ++
Sbjct: 361 IGTPAITTRGFKEAEMKEI 379
|
Length = 416 |
| >gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 643 bits (1662), Expect = 0.0
Identities = 242/377 (64%), Positives = 301/377 (79%), Gaps = 4/377 (1%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
+L+ DP+I+E I +E +RQ +IELIASEN+TS AVMEAQG+ LTNKYAEGYPGKRYY
Sbjct: 5 ASLADYDPEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYY 64
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGG 125
GGC+++D +E++AI R KK+F AE ANVQPHSGSQANQAV+ ++L PGDTIMG+ L GG
Sbjct: 65 GGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGG 124
Query: 126 HLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFE 184
HLTHG +N SGK FN + YG++ + IDY +VE LAK+ KPKLIIAG SAYS+ IDF+
Sbjct: 125 HLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSAYSRPIDFK 184
Query: 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKK 244
RF IA + +Y MVDMAH AGLIA G +PNP+P AD +T+TTHK+LRGPRGG IL +
Sbjct: 185 RFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPRGGIILTNDE 244
Query: 245 --YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302
KK INSAVFPG+QGGPLMHVIAAKAVAFKE L+P+FK Y KQVVKNAK L++ L +R
Sbjct: 245 ELAKK-INSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER 303
Query: 303 GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLG 362
G ++VSGGT +H++LVDLR+K +TGK AE+ LE A I NKN+IP DPE P+ TSGIR+G
Sbjct: 304 GFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIG 363
Query: 363 SSAITTRGFSELEIIKV 379
+ A+TTRGF E E+ ++
Sbjct: 364 TPAVTTRGFGEAEMEEI 380
|
Length = 413 |
| >gnl|CDD|237280 PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 629 bits (1624), Expect = 0.0
Identities = 226/377 (59%), Positives = 294/377 (77%), Gaps = 2/377 (0%)
Query: 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP 60
M +++L + D +++ I KE +RQ +++ELIASEN+TS AVMEAQG++LTNKYAEGYP
Sbjct: 2 MFFFSDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYP 61
Query: 61 GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
GKRYYGGC+F+D +E +AI R K++F + ANVQPHSGSQAN AV+ ++L PGDTI+GMS
Sbjct: 62 GKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALLKPGDTILGMS 121
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKE-KIDYKKVEYLAKKNKPKLIIAGASAYSQ 179
L GGHLTHG +++SGKW+N++ YG+++ IDY +VE LAK++KPKLIIAG SAY +
Sbjct: 122 LSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSAYPR 181
Query: 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFI 239
+DF RF IA + + MVDMAH AGL+AAGE+PNP P A +T+TTHK+LRGPRGG I
Sbjct: 182 ELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRGGMI 241
Query: 240 LMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298
L ++ K INSAVFPG+QGGPLMHVIAAKAVAF E L+P+FK Y KQV+ NA+ L+++
Sbjct: 242 LTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEV 301
Query: 299 LDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSG 358
L +RG +VSGGT +H++LVDLR K ++GK AE LE A I NKN++P D E P+ TSG
Sbjct: 302 LKERGYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSG 361
Query: 359 IRLGSSAITTRGFSELE 375
IR+G+ A TTRGF E E
Sbjct: 362 IRIGTPAGTTRGFGEAE 378
|
Length = 416 |
| >gnl|CDD|189558 pfam00464, SHMT, Serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Score = 595 bits (1536), Expect = 0.0
Identities = 223/377 (59%), Positives = 289/377 (76%), Gaps = 4/377 (1%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
LS DP+I++II KEK+RQ IELIASEN+TS AVMEA G++LTNKYAEGYPGKRYYGG
Sbjct: 1 LSDSDPEIFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYAEGYPGKRYYGG 60
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+++D +E +A +R K++F + NVQP SGSQAN AV+ ++LNPGD IMG+ L GGHL
Sbjct: 61 CEYVDEVETLAQDRAKELFGLDGVNVQPLSGSQANLAVYTALLNPGDRIMGLDLPHGGHL 120
Query: 128 THGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +N SGK+F S+ YG++ IDY ++E AK KPKLI+AG SAYS+ ID+ RF
Sbjct: 121 THGYPVNFSGKFFESMPYGVDPDTGLIDYDQLEKNAKLFKPKLIVAGTSAYSRLIDYARF 180
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK--- 243
IA + +Y MVDMAH AGL+AAG P+P P+A +T+TTHK+LRGPRGG I ++
Sbjct: 181 REIADEVGAYLMVDMAHIAGLVAAGVIPSPFPYAHVVTTTTHKTLRGPRGGMIFFREILY 240
Query: 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303
+ +K INSAVFPG+QGGPL HVIAAKAVA K+ L P+FK+YQ+QV+KNAK L++ L +RG
Sbjct: 241 ELEKKINSAVFPGLQGGPLNHVIAAKAVALKQALTPEFKVYQQQVLKNAKALAEALKERG 300
Query: 304 IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGS 363
++VSGGT +H++LVDLR K + GK AE LE ANI NKN+IP DP+ P+ TSG+RLG+
Sbjct: 301 YKLVSGGTDNHLVLVDLRPKGLDGKRAEKALERANITANKNTIPGDPKSPFVTSGLRLGT 360
Query: 364 SAITTRGFSELEIIKVV 380
A+T+RGF E + +V
Sbjct: 361 PALTSRGFGEADFEEVA 377
|
Length = 380 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 607 bits (1566), Expect = 0.0
Identities = 220/360 (61%), Positives = 292/360 (81%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP +F TL+GQ H+ ++L +AL+++RLHHAYLFTGTRGVGKTT+SRILAK LNC
Sbjct: 5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
G DG GGIT+QPCG+C C +ID G F+DYIEMDAAS RG++EMAQLL++ +YAP R
Sbjct: 65 TGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGR 124
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHMLT+HAFNAMLKTLEEPP+++KFILATT+PQKIP+TVLSRC+QFNLK+M
Sbjct: 125 FKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 184
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
IV++L IL +E I E +AL L+A AQGSMRDALSLTDQAI YS+ ++ +++
Sbjct: 185 PGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVRG 244
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP 679
ML IDQ YL+++LDALA +DG +L+IA+++ +LS++ L+DL+ LL +I+L Q+ P
Sbjct: 245 MLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVP 304
Query: 680 EILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739
+ D P ++I +L+ +F+ +++QLFYQI+ GR+EL LAPDEYAGFTMTLLRML F+
Sbjct: 305 AAVQDDWPEADDIRRLAGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAFR 364
|
Length = 700 |
| >gnl|CDD|99733 cd00378, SHMT, Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Score = 592 bits (1528), Expect = 0.0
Identities = 228/375 (60%), Positives = 287/375 (76%), Gaps = 4/375 (1%)
Query: 10 KIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCK 69
+DP+I EII KE +RQ +ELIASEN+TS AVMEA G+ LTNKYAEGYPGKRYYGGC+
Sbjct: 2 DVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCE 61
Query: 70 FIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTH 129
++D IE +AI R KK+F AE ANVQPHSGSQAN AV+F++L PGDTIMG+ L GGHLTH
Sbjct: 62 YVDEIEDLAIERAKKLFGAEYANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTH 121
Query: 130 GMM--LNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
G ++ SGK F S+ YG++ + IDY +E +A + KPKLI+AGASAY + IDF+RF
Sbjct: 122 GSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYPRPIDFKRF 181
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKK-Y 245
IA + +Y +VDMAH AGL+A G +PNP+P AD +T+TTHK+LRGPRGG IL +K
Sbjct: 182 REIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTRKGEL 241
Query: 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIR 305
K INSAVFPG+QGGP +HVIAAKAVA KE L+P+FK Y KQVV+NAK L++ L +RG +
Sbjct: 242 AKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFK 301
Query: 306 IVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365
+VSGGT +H++LVDLR K ITGK AE LE A I NKN++P DP P+ SGIR+G+ A
Sbjct: 302 VVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPA 361
Query: 366 ITTRGFSELEIIKVV 380
+TTRG E E+ ++
Sbjct: 362 MTTRGMGEEEMEEIA 376
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. Length = 402 |
| >gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 595 bits (1536), Expect = 0.0
Identities = 188/360 (52%), Positives = 268/360 (74%), Gaps = 1/360 (0%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARKYRP +F+ ++GQ H+ ++L NAL ++RLHHAYLFTGTRGVGKTT+SRILAK LNC
Sbjct: 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
G DG GGIT+ PCG C C ID+G F+DY E+DAAS RG++E+ QLLEQ +Y P+ R
Sbjct: 65 QGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGR 124
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+++IDEVHMLT+ AFNAMLKTLEEPP+Y+KF+LATT+PQK+P+TVLSRC+QFNL+ M
Sbjct: 125 FKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMA 184
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
++ +L +L EN+ E AL L+A A+GSMRDALSLTDQAI + S ++ ++++
Sbjct: 185 PETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAVRQ 244
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP 679
ML +D+ ++ +++DALA+ DG ++ A+++ + LS + L++++ +L +++++Q P
Sbjct: 245 MLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVP 304
Query: 680 EILIKDS-PNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
+ + P E+ +L+ ++ QL Y I +HGR EL LAPDEYA TM LLR+L F
Sbjct: 305 QAAAAATDPEAAEVARLAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLAF 364
|
Length = 618 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 553 bits (1427), Expect = e-180
Identities = 214/360 (59%), Positives = 282/360 (78%), Gaps = 5/360 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP +F +L+GQ H+ ++L +ALD RLHHAYLFTGTRGVGKTT+SRI AK LNC
Sbjct: 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
G+TSQPCG C C +ID G F+DY+EMDAAS RG++EMA LLE+ +YAP++AR
Sbjct: 65 -----ETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDAR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHMLT+HAFNAMLKTLEEPP ++KFILATT+PQKIP+TVLSRC+QFNLK+M
Sbjct: 120 FKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
IV++L IL +E I FE AL L+A AQGSMRDALSLTDQAI YS+ ++T ++
Sbjct: 180 AGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSG 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP 679
ML +DQ Y++++LDALA DG IL++A+++ + +LS+S L+DL+ LLH+I+ Q +P
Sbjct: 240 MLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAP 299
Query: 680 EILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739
++ + P ++ + ++ + EQ+QLFYQI+ GR EL LAPDEYAGFTMTLLRML F+
Sbjct: 300 ASVLDEWPEAADLRRFAELLSPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAFE 359
|
Length = 830 |
| >gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 538 bits (1389), Expect = e-178
Identities = 202/359 (56%), Positives = 273/359 (76%), Gaps = 5/359 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP +F+ L+GQ H+ ++L NAL+++RLHHAYLFTGTRGVGKTT++RILAK LNC
Sbjct: 5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
G+T+ PCG CS C++ID+G F+D IE+DAAS ++ M +LL+ YAP R
Sbjct: 65 -----ETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ AFNAMLKTLEEPP+++KFILATT+PQKIP+TVLSRC+QFNLK+M
Sbjct: 120 FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
IV++L +IL +ENI F+ +AL L+A A GSMRDALSL DQAI Y + + ++
Sbjct: 180 PPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRA 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP 679
ML IDQ YL +L+AL QDG +L+IA+ +E +LS+ L+DL+ LLH++++ Q P
Sbjct: 240 MLGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVP 299
Query: 680 EILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
+ + D P + ++ L+K+ + E IQL+YQI++HGR +L LAPDEYAGFTMTLLRML F
Sbjct: 300 DSIADDLPERDRLLDLAKRLSPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAF 358
|
Length = 527 |
| >gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A | Back alignment and domain information |
|---|
Score = 529 bits (1366), Expect = e-177
Identities = 204/349 (58%), Positives = 253/349 (72%), Gaps = 6/349 (1%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+GG+M A DK+GIQFR+LN+SKG AVRA RAQVDR LY + +
Sbjct: 49 KGHLVREI----DALGGLMGKAADKTGIQFRMLNTSKGPAVRALRAQVDRDLYSKEMTET 104
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LEN NL L Q EV DLI + K+ GVVT+ G ++ +K V+L TGTFLNGKIHIGLK Y
Sbjct: 105 LENHPNLTLIQGEVTDLIPENGKVKGVVTEDGEEYKAKAVVLATGTFLNGKIHIGLKCYP 164
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
AGR G+ ++ L++ LKEL GR KTGTPPRIDK +IDFSK+EEQ GD P P FS L
Sbjct: 165 AGRLGELTSEGLSESLKELGFELGRFKTGTPPRIDKDSIDFSKLEEQPGD-KPGPPFSYL 223
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
N ++ +Q CF+T+TNE TH IIR SP+F G IE IGPRYCPSIEDK RF K
Sbjct: 224 -NCPMNKEQYPCFLTYTNEATHEIIRDNLHRSPMFEGCIEGIGPRYCPSIEDKPVRFADK 282
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
H +FLEPEG+ +EYY G STSLP + Q ++++I G++NA I+RPGYAIEYDY +P
Sbjct: 283 PYHQVFLEPEGLDTDEYYLVGFSTSLPEDVQKRVLRTIPGLENAEIVRPGYAIEYDYIDP 342
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRD 1105
L +LETK+I GLFFAGQINGT GYEEAA+QGLLAG+NAA + ++
Sbjct: 343 PQLLPTLETKKIPGLFFAGQINGTEGYEEAAAQGLLAGINAARKALGKE 391
|
Length = 391 |
| >gnl|CDD|240264 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 504 bits (1301), Expect = e-166
Identities = 196/389 (50%), Positives = 262/389 (67%), Gaps = 14/389 (3%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
N++L + DP+++E+I KEK+RQ +ELIASEN+TS AV+E G+ TNKYAEG PG RY
Sbjct: 12 NQSLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRY 71
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG + +D IE + R + F + NVQP+SGS AN AV+ ++L P D IMG+
Sbjct: 72 YGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLD 131
Query: 121 LQEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGAS 175
L GGHLTHG ++ + +F S+ Y +N+K IDY K+E LAK +PKLIIAGAS
Sbjct: 132 LPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAGAS 191
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
AY + ID++RF I ++ +Y M D+AH +GL+AAG P+P P+AD +T+TTHKSLRGPR
Sbjct: 192 AYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPR 251
Query: 236 GGFILMKKK----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKN 291
G I +KK + IN AVFPG+QGGP H IAA AV KEV P++K Y KQV+KN
Sbjct: 252 SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKN 311
Query: 292 AKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPE 351
AK L+ L++RG +V+GGT +H++LVDLR ITG E +L++ NI NKN+IP D
Sbjct: 312 AKALAAALEKRGYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKS 371
Query: 352 KPYFTSGIRLGSSAITTRGFSELEIIKVV 380
SG+RLG+ A+TTRG E + V
Sbjct: 372 ALN-PSGVRLGTPALTTRGAKEKDFKFVA 399
|
Length = 452 |
| >gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 498 bits (1285), Expect = e-161
Identities = 175/360 (48%), Positives = 243/360 (67%), Gaps = 6/360 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F ++GQ H+ +L NALD RLHHAYLF+GTRGVGKTTI+R+LAK LNC
Sbjct: 5 VLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT+ PCG+C C +I+ G F+D IE+DAAS + + +LL+ YAP R
Sbjct: 65 ET-----GITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I L +IL E I FE AL L+A A GSMRDALSLTDQAI + ++T + +
Sbjct: 180 VEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSA 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP 679
ML +D + +L+AL E DG ++++ N++ + +L +L LLH+I++ Q+ P
Sbjct: 240 MLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLP 299
Query: 680 EILIKDSPNYN-EIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
L D + + +L++ E +QL+YQ + GR +L LAPD G MTLLRML F
Sbjct: 300 AALDNDMADIELRLRELARTLPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAF 359
|
Length = 647 |
| >gnl|CDD|233847 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Score = 448 bits (1155), Expect = e-146
Identities = 158/359 (44%), Positives = 229/359 (63%), Gaps = 6/359 (1%)
Query: 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLN 438
VLARKYRP F +IGQ HI ++L NA+ R+ HAYLF+G RG GKT+I+RI AK LN
Sbjct: 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61
Query: 439 CIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINA 498
C G +PC +C C +I++G +D IE+DAAS G++++ ++L+ YAP +
Sbjct: 62 CQN-----GPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSG 116
Query: 499 RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM 558
+YK+Y+IDEVHML+ AFNA+LKTLEEPP+++ FILATTEP KIP T+LSRC +F+ K++
Sbjct: 117 KYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRI 176
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
DIV L IL+KE IK E AL LIA A GS+RDALSL DQ I++ + IT +
Sbjct: 177 PLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVN 236
Query: 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQIS 678
E+L ++D + LI++L+A+ +D L I ++I + L+DL +L + LI+ +
Sbjct: 237 ELLGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKT 296
Query: 679 PEILIKDSPNYNEIIQ-LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRML 736
P L+ + E ++ L+ K ++E + I + +L + D MTLLR+L
Sbjct: 297 PSNLLAVLESEQEFLKELALKLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis [DNA metabolism, DNA replication, recombination, and repair]. Length = 355 |
| >gnl|CDD|215639 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 447 bits (1152), Expect = e-144
Identities = 188/405 (46%), Positives = 250/405 (61%), Gaps = 37/405 (9%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
N L ++DP+I +II KEK+RQ +ELIASEN+TS AVMEA G+ LTNKY+EG PG RY
Sbjct: 12 NAPLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARY 71
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG ++ID IE + R + F + NVQP SGS AN AV+ ++L P D IMG+
Sbjct: 72 YGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLD 131
Query: 121 LQEGGHLTHGMMLNMSGK------WFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAG 173
L GGHL+HG K +F S+ Y L++ IDY K+E A +PKLIIAG
Sbjct: 132 LPHGGHLSHGYQ-TDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG 190
Query: 174 ASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRG 233
ASAY + D+ R IA + + M DMAH +GL+AA E +P + D +T+TTHKSLRG
Sbjct: 191 ASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRG 250
Query: 234 PRGGFILMKK--------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKP 279
PRGG I +K Y+ IN AVFPG+QGGP H IAA AVA K+ + P
Sbjct: 251 PRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTP 310
Query: 280 DFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339
+FK YQKQV NA L+ L +G ++V+GGT +H++L DLR +TG E +L+ A+I
Sbjct: 311 EFKAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHI 370
Query: 340 ICNKNSIPNDPEKPYFTS-----GIRLGSSAITTRGFSELEIIKV 379
NKN++P D +S G+R+G+ A+T+RG E + KV
Sbjct: 371 TLNKNAVPGD------SSALVPGGVRIGTPAMTSRGLVEKDFEKV 409
|
Length = 475 |
| >gnl|CDD|184161 PRK13580, PRK13580, serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 436 bits (1124), Expect = e-140
Identities = 180/418 (43%), Positives = 262/418 (62%), Gaps = 44/418 (10%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
+ + ++P+I E I +E Q ++++LIASENY+SLAV A G LLT+KYAEG PG R+Y
Sbjct: 28 DVILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFY 87
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL-----NPG------- 113
GC+ +D +E A K++F AE A VQPHSG+ AN F+++L +P
Sbjct: 88 AGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAK 147
Query: 114 -------------------DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK-EKI 153
++GMSL GGHLTHG N+SGK F+ YG++ +
Sbjct: 148 TVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLL 207
Query: 154 DYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAA--- 210
DY ++ LA++ KP +++AG SAY + ++F + IA + + MVDMAH+AGL+A
Sbjct: 208 DYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVF 267
Query: 211 -GEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAK 269
G+ +PVP AD +T+TTHK+LRGPRGG +L KK+Y ++ P + GGPL HV+AAK
Sbjct: 268 TGDE-DPVPHADIVTTTTHKTLRGPRGGLVLAKKEYADAVDKGC-PLVLGGPLPHVMAAK 325
Query: 270 AVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKI 329
AVA E P+F+ Y +QVV NA+ L++ +RG R+V+GGT +H++L+D+ + +TG+
Sbjct: 326 AVALAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGLTGRQ 385
Query: 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGF--SEL----EIIKVVL 381
AES L A I+ N+NSIP+DP ++TSGIRLG+ A+TT G E+ E+I VL
Sbjct: 386 AESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVL 443
|
Length = 493 |
| >gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 437 bits (1124), Expect = e-137
Identities = 185/362 (51%), Positives = 255/362 (70%), Gaps = 5/362 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F L+GQ H+ K+L NALD+ RLHHAYL TGTRGVGKTTI+RILAK LNC
Sbjct: 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
+PCG C C +ID G ++D +E+DAAS GI+ + ++LE YAP +
Sbjct: 65 -----ENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGK 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
YK+Y+IDEVHML+ AFNAMLKTLEEPP+++KFILATT+P K+P+TVLSRC+QF L+ M
Sbjct: 120 YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMT 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
+ ++L ++L+ E I +E AL L+ A GSMRDALSL DQAI S K+ N +++
Sbjct: 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQ 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP 679
M+ +D++YL ++L + QDG +L+ A ++ + + L +L++LL Q++LIQ P
Sbjct: 240 MIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVP 299
Query: 680 EILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739
L D P+ + + +L++ + EQIQL+YQI++HG+ +L LAPDEYAGF MTLLRML F
Sbjct: 300 SALAHDDPDSDILHRLAQTISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAFA 359
Query: 740 TL 741
L
Sbjct: 360 PL 361
|
Length = 709 |
| >gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 409 bits (1054), Expect = e-130
Identities = 165/359 (45%), Positives = 236/359 (65%), Gaps = 7/359 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARKYRP F+ ++GQ H+ K+L NAL+ R+ HAYLF+G RGVGKTTI+RILAK LNC
Sbjct: 5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
G T++PCGKC C +I+ G +D IE+DAAS G++++ +++E+ YAP R
Sbjct: 65 EN-----GPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
YK+Y+IDEVHML+ AFNA+LKTLEEPP ++KFILATTEPQKIP T+LSRC +F+ K++
Sbjct: 120 YKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLD 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
+I +L IL+KE I E AL+LIA A+GS+RDALSL DQAI + +ITL S+++
Sbjct: 180 LEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRD 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQ-ISLIQIS 678
ML + D + L+ +L+A+ + D L + N++ L+DL L + Q
Sbjct: 240 MLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTV 299
Query: 679 PEILIKDSPNYNE-IIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRML 736
P L ++ E +L+ + ++ +Q YQ+ + G EL+ + G MTL+R+L
Sbjct: 300 PNELQLNTTEIEERTKELASQISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLL 358
|
Length = 515 |
| >gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 410 bits (1055), Expect = e-125
Identities = 181/373 (48%), Positives = 251/373 (67%), Gaps = 34/373 (9%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP+ F ++GQ+H+ +L NAL ++RLHHAYLFTGTRGVGKT+++R+ AK LNC
Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
G+T+ PCG CS CV+I G F+D IE+DAAS +++ +LL+ Y P R
Sbjct: 65 -----EQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ +FNA+LKTLEEPP+++KF+LATT+PQK+P+TVLSRC+QFNLK +
Sbjct: 120 FKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLT 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
+I L +IL +E + FE AL L+A A GSMRDALSLTDQAI + ++ L +Q
Sbjct: 180 QDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQT 239
Query: 620 MLSIIDQKYLIQILDALAEQD-GNLILSIANKIEIYNLSYSI----VLKDLSLLLHQISL 674
ML ID++++I +L AL + D G L+ + A ++ L++ VL+ L LLHQI+L
Sbjct: 240 MLGSIDEQHVIALLKALTDADIGVLMQTCA-QV----LAFGADAQEVLRSLLELLHQITL 294
Query: 675 IQISP----EILIKDSPNYNEII-----QLSKKFNIEQIQLFYQISIHGRNELELAPDEY 725
Q +P + L Y+E I QLS EQ+QL+YQI + GR +L APD
Sbjct: 295 TQFAPAAAQQSL------YSEQIRAFAEQLSP----EQVQLYYQILLTGRKDLPHAPDPK 344
Query: 726 AGFTMTLLRMLVF 738
+G M LLR + F
Sbjct: 345 SGLEMALLRAVAF 357
|
Length = 944 |
| >gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 375 bits (964), Expect = e-114
Identities = 178/363 (49%), Positives = 251/363 (69%), Gaps = 6/363 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARKYRP NFN L+GQNH+S++L +AL++ RLHHAYLFTGTRGVGKTTI+RILAKCLNC
Sbjct: 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
G+TS PC C+ C ++ G F+D IE+DAAS + + +LL+ YAP R
Sbjct: 64 -----ETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGR 118
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+ ATT+PQK+PITV+SRC+QF L+ +
Sbjct: 119 FKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLA 178
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
+I +L IL KE I + A+ IA AQGS+RDALSLTDQAI Y + ++E
Sbjct: 179 VDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKE 238
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP 679
ML +ID+ + ++ A+ + + + + L S+VL L LH+++L+Q P
Sbjct: 239 MLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLP 298
Query: 680 EILIKDSPNYN-EIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
E+ +K S N +I+QLSK + + +QL+YQI+ GR++L+LA + GF M +LR+L F
Sbjct: 299 ELGLKYSEEINAKILQLSKLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAF 358
Query: 739 QTL 741
+ L
Sbjct: 359 RPL 361
|
Length = 702 |
| >gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 362 bits (932), Expect = e-114
Identities = 169/364 (46%), Positives = 237/364 (65%), Gaps = 7/364 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
+LARK+RP F +IGQ HI ++ N L R+HHA+L +GTRGVGKTTI+R+LAK LNC
Sbjct: 5 ILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GITS PC KC +C +I+ G +D IE+DAAS + EM ++L+ Y+P +R
Sbjct: 65 -----QNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP++IKFILATT+ +KIP T+LSRC+QF LK +
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIIS 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I N L YIL KE+I + AL LIA A GSMRDAL+L + AIN I + ++ +
Sbjct: 180 EEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTD 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP 679
ML ++++K + DAL ++D + + NKI + + +L ++ LH IS+ Q P
Sbjct: 240 MLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFP 299
Query: 680 EI--LIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737
+I I N+I ++++ IQL YQI ++GR EL+ APD+ G MTLLR +
Sbjct: 300 KIWNTIFIKNYKNQIQKIAQNNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAIN 359
Query: 738 FQTL 741
T
Sbjct: 360 AITK 363
|
Length = 363 |
| >gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 370 bits (952), Expect = e-114
Identities = 147/333 (44%), Positives = 211/333 (63%), Gaps = 19/333 (5%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
L RK+RP F ++GQ HI+K+L NA+ + ++ HAYLF+G RG GKT+ ++I AK +NC+
Sbjct: 6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65
Query: 441 -GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
DG PC +C +C I NG MD IE+DAAS G++E+ + ++ YAP A+
Sbjct: 66 NPPDGE------PCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAK 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
YK+Y+IDEVHML+ AFNA+LKTLEEPP ++ FILATTEP KIP T+LSRC +F+ K++
Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRIS 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
DIV L YIL+KE I++E AL LIA A+G MRDALS+ DQAI++ K+T E
Sbjct: 180 VEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALE 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKI-----EIYNLSYSIVLKDLSLLLHQISL 674
+ + Q+ L ++DA+ E D L I ++ + ++DL L + L
Sbjct: 240 VTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRF-----IEDLIYYLRDLLL 294
Query: 675 IQISPEILIKDSP--NYNEIIQLSKKFNIEQIQ 705
++ SPE+ I D N +LS+K +IE++
Sbjct: 295 VKTSPELEILDESTENDELFKELSEKLDIERLY 327
|
Length = 559 |
| >gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 361 bits (930), Expect = e-111
Identities = 148/367 (40%), Positives = 228/367 (62%), Gaps = 19/367 (5%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARKYRP F+ LIGQ + ++L NA + R+ A++ TG RGVGKTT +RILA+ LN
Sbjct: 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY 72
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
G DG+GG T CG C I G +D +EMDAAS G++++ +++E Y P++AR
Sbjct: 73 EGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSAR 132
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
YK+Y+IDEVHML+ AFNA+LKTLEEPP ++KFI ATTE +K+P+TVLSRC +F+L+++
Sbjct: 133 YKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIE 192
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
+ +L I KE ++ E AL LIA A+GS+RD LSL DQAI + + ++T ++++
Sbjct: 193 ADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAVRD 252
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYS------IVLKDLSLLLHQIS 673
ML + D+ +I + +AL D +A + + Y +VL DL+ H ++
Sbjct: 253 MLGLADRARVIDLFEALMRGD------VAAALAEFRAQYDAGADPVVVLTDLAEFTHLVT 306
Query: 674 LIQISPEILIKDSPNYNEI-----IQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGF 728
++I P+ + P+ +E + +KK ++ + +Q+ + G E++ AP A
Sbjct: 307 RLKIVPDAA--EDPSLSEAERTRGAEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAA 364
Query: 729 TMTLLRM 735
M L+R+
Sbjct: 365 EMVLIRL 371
|
Length = 598 |
| >gnl|CDD|184922 PRK14958, PRK14958, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 353 bits (907), Expect = e-109
Identities = 177/359 (49%), Positives = 247/359 (68%), Gaps = 7/359 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F +IGQ + ++L NALD++ LHHAYLFTGTRGVGKTTISRILAKCLNC
Sbjct: 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
G+++ PC C C +ID G F D E+DAAS + + +LL+ YAP R
Sbjct: 65 -----EKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP ++KFILATT+ K+P+TVLSRC+QF+L ++
Sbjct: 120 FKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLP 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + ++L +EN++FE +AL+L+A A GS+RDALSL DQ+I Y + K+ + ++
Sbjct: 180 PLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKT 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP 679
ML I+ L IL+ALA + G+ +L ++ + +S L DL LLHQI++IQ P
Sbjct: 240 MLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVP 299
Query: 680 EILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
E LI++ + ++ QL+K + E +QLFYQI + G+ +L +P GF MTLLRML F
Sbjct: 300 EALIEN--DSEQLRQLAKLLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAF 356
|
Length = 509 |
| >gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Score = 349 bits (896), Expect = e-106
Identities = 177/413 (42%), Positives = 242/413 (58%), Gaps = 36/413 (8%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
N+ L + DP I E++ KEKQRQ IELIASEN+ AVMEA G+ LTNKY+EG PG RY
Sbjct: 126 NQPLPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARY 185
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
Y G ++ID IE++ R F ++ NVQP+S + AN AV+ +L PGD IMG+
Sbjct: 186 YTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLD 245
Query: 121 LQEGGHLTHGMMLNMSGK-------WFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIA 172
GGH++HG GK +F S+ Y +N + IDY K+E A +PK++I
Sbjct: 246 SPSGGHMSHGYYTP-GGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILIC 304
Query: 173 GASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLR 232
G S+Y + D+ RF IA + M DMAH +GL+AA E NP + D +TSTTHKSLR
Sbjct: 305 GGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLR 364
Query: 233 GPRGGFILMKK--------------------KYKKIINSAVFPGIQGGPLMHVIAAKAVA 272
GPRGG I +K +++ IN AVFP +QGGP + IAA A+A
Sbjct: 365 GPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIA 424
Query: 273 FKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAES 332
K+V P++K Y +QV KNA+ L+ L +R R+V+GGT +H++L DL +TGK E
Sbjct: 425 LKQVATPEYKAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEK 484
Query: 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGF--SELEIIKVVLAR 383
+ E +I NK +I D G+R+G+ A+T+RG S+ E I L R
Sbjct: 485 VCEMCHITLNKTAIFGD-NGTISPGGVRIGTPAMTSRGCLESDFETIADFLLR 536
|
Length = 586 |
| >gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 341 bits (876), Expect = e-104
Identities = 149/363 (41%), Positives = 211/363 (58%), Gaps = 28/363 (7%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
LA KYRP +F+ LIGQ +SK+L ALD RL HAYLF+G RG GKT+ +RI A+ L C
Sbjct: 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVC 62
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
G +S PC C C +D IEMDAAS RGI+++ +L+EQT Y P AR
Sbjct: 63 -----EQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMAR 117
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+KI++IDEVHMLT AFNA+LKTLEEPP Y+KFILATT+P K+P T+LSR F K++
Sbjct: 118 FKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIP 177
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
+ I+++L IL KE + +E AL ++A GS+RD L+L DQAI Y IT + + +
Sbjct: 178 QNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVAD 237
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP 679
ML ++D L A+ QD + + ++E Y +VL ++ L L +
Sbjct: 238 MLGLLDPSKLEDFFQAILNQDKEKLFELLKELEDYEA--EMVLDEMMLFLKE-------- 287
Query: 680 EILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739
+ L KDS +F+I + F++I ++ L+ D GF + L+ + +
Sbjct: 288 KFLSKDS-----------EFSILLYERFFRILSSAKSLLKEGAD--DGFVLLLMLFKMKE 334
Query: 740 TLH 742
L
Sbjct: 335 ALK 337
|
Length = 535 |
| >gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 320 bits (820), Expect = 3e-96
Identities = 160/359 (44%), Positives = 232/359 (64%), Gaps = 5/359 (1%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
LARKYRP +F + GQ H SL++AL+ +++HHAYLFTGTRGVGKTT+ R+LAKCLNC
Sbjct: 6 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC- 64
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
G+T++PC KC CV I+N F+D IE+DAAS G+ E ++L+ Y P RY
Sbjct: 65 ----KTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRY 120
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
K+Y+IDEVHML+ +FNA+LKTLEEPP+Y+KFILATT+ KIP+T+LSRCIQ +LK +
Sbjct: 121 KVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEM 620
DI + L IL KENI + +L IA A+GS+RDALSL DQAI++ ++ +++M
Sbjct: 181 ADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQM 240
Query: 621 LSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPE 680
L IID + + I++A+ + D IL + + S VL ++ + + +
Sbjct: 241 LGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQS 300
Query: 681 ILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739
+ + + + I + K +IEQ YQ++I + ++ LAP+ G TM +LR++ FQ
Sbjct: 301 LDAVNDIDVDIINNILAKISIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAFQ 359
|
Length = 546 |
| >gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 320 bits (822), Expect = 3e-96
Identities = 141/361 (39%), Positives = 218/361 (60%), Gaps = 12/361 (3%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARKYRP F+ L GQ H+S++L NA+D R+ HA+LFTG RGVGKT+ +RILAK LNC
Sbjct: 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
G+T++PC C CV+I G +D E+D AS G++++ +L E Y P +R
Sbjct: 65 -----EQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
YKI++IDEVHML+ +AFNA+LKTLEEPP ++KFI ATTEP K+PIT+LSRC +F+ +++
Sbjct: 120 YKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIP 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
IV+ L YI ++E I +AL L+A GSMRD+LS DQ + + + + + + E
Sbjct: 180 LQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAE 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP 679
+L ++D++ L+ I A+ +D +L I +++ + + ++L L + +++
Sbjct: 240 LLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVG 299
Query: 680 E---ILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFT--MTLLR 734
E +L E+ + + +Q + + R E E+A + M LL+
Sbjct: 300 EPGDLLDLSEAELAELRAQAAAADAADLQRHLTLLL--RAEGEMAHASFPRLVLEMALLK 357
Query: 735 M 735
M
Sbjct: 358 M 358
|
Length = 576 |
| >gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 296 bits (760), Expect = 1e-88
Identities = 134/294 (45%), Positives = 178/294 (60%), Gaps = 5/294 (1%)
Query: 382 ARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIG 441
ARKYRP F +IGQ + + L NA+ +R+ HAY+F G RG GKTTI+RILAK LNC+
Sbjct: 7 ARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLN 66
Query: 442 IDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYK 501
+PCGKC CV+ID G F D IE+DAAS RGI+++ L + Y PI +YK
Sbjct: 67 -----PQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYK 121
Query: 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHH 561
+Y+IDE HMLT AFNA+LKTLEEPP FIL TTE KIP T+LSRC +F K
Sbjct: 122 VYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKE 181
Query: 562 DIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEML 621
I L I N+E I++E AL+L+A ++G MRDA SL DQA Y K+T+ ++E L
Sbjct: 182 QIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFL 241
Query: 622 SIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLI 675
I+ Q+ + + L+ L E D + + +E + + K L + I L
Sbjct: 242 GIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLN 295
|
Length = 486 |
| >gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 284 bits (729), Expect = 1e-84
Identities = 129/322 (40%), Positives = 194/322 (60%), Gaps = 20/322 (6%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
L RKYRP F+ ++GQ+H+ K +INAL K + HAY+F G RG GKTT++RILAK LNC
Sbjct: 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
+ G+ +PC +C C ID G FMD IE+DAAS RGI+E+ ++ + Y P+ +
Sbjct: 63 ---ENRKGV--EPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGK 117
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
YK+Y+IDEVHMLT AFNA+LKTLEEPP ++ F+LATT +K+P T++SRC + +
Sbjct: 118 YKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNIS 177
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I+ L + E I+ + AL+ IA A G +RDAL++ +Q +S KITL ++ E
Sbjct: 178 DELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHE 237
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP 679
L +I + + ++A+ D + ++ + + Y + LIQ +
Sbjct: 238 ALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEV-------------LIQQAI 284
Query: 680 EILIKD--SPNYNEIIQLSKKF 699
E L++D N+IIQ+S++
Sbjct: 285 EDLVEDLERERANDIIQVSRQL 306
|
Length = 472 |
| >gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 288 bits (739), Expect = 3e-84
Identities = 134/336 (39%), Positives = 208/336 (61%), Gaps = 31/336 (9%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP F+ L+GQ I+ +L NAL R+ AYLFTG RG GKT+ +RILAK LNC+ D
Sbjct: 9 KYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSD 68
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIY 503
T +PCGKC +C I G +D IE+DAAS G++ + +L+E+ +AP+ AR+K+Y
Sbjct: 69 KP---TPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVY 125
Query: 504 VIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDI 563
VIDE HML+ AFNA+LKTLEEPP + F+LATT+PQ++ T++SRC +F+ +++ +
Sbjct: 126 VIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAM 185
Query: 564 VNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSI 623
V +L I KE+I+ E AL L+A +QG +RDA SL DQ ++ IT ++ ++L
Sbjct: 186 VQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQ-LSLLPGPITPEAVWDLLGA 244
Query: 624 IDQKYLIQILDALAEQDGNLILSIANKIEIYN-----LSYSIVLKDLS-----LLLH--- 670
+ ++ L+ +L ALA D +L + + + L+ +L+ L+ LLL
Sbjct: 245 VPEQDLLNLLKALASNDPESLLDSCRQ--LLDRGREPLA---ILQGLAAFYRDLLLAKTA 299
Query: 671 --QISLIQISPEILIKDSPNYNEIIQLSKKFNIEQI 704
+ L+ +S + ++E+ +L+K+ N+E+I
Sbjct: 300 PNRPDLVAVSQQ-------TWDELCKLAKQINLERI 328
|
Length = 620 |
| >gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 279 bits (715), Expect = 6e-83
Identities = 124/297 (41%), Positives = 180/297 (60%), Gaps = 4/297 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
V +RKYRP F+ ++GQ+ + L NAL R HAYLF+G RG GKTT++RI AK LNC
Sbjct: 6 VSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
+ +PC +C+ C +I +G +D +E+D AS RGI ++ Q+ E ++ P +R
Sbjct: 66 QNPTEDQ----EPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSR 121
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
YKIY+IDEVHMLT AFN++LKTLEEPP+++KF LATTE KIP T+LSRC + +LK++
Sbjct: 122 YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIP 181
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I++ L I +E I+ AL IA AQGS+RDA SL D + + + +S+ +
Sbjct: 182 EETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAK 241
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQ 676
L ++ Q L + +A+ Q+ L ++ + L DL+L I L Q
Sbjct: 242 ALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQ 298
|
Length = 451 |
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 282 bits (722), Expect = 2e-82
Identities = 121/272 (44%), Positives = 167/272 (61%), Gaps = 4/272 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VL RK+R F L+GQ H+ ++L NA+ + R+ HAYLFTG RGVGKT+ +RILAK +NC
Sbjct: 5 VLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
D G +PCG C +C I G +D IEMDAAS +++ +++E+ + P AR
Sbjct: 65 TTNDPKG----RPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALAR 120
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
YK+Y+IDEVHML+ AFNA+LKTLEEPP + FILATTE K+P T+LSRC +F+ +
Sbjct: 121 YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHS 180
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
D+ +L I E I E AL IA A GSMRDA +L Q +I+L+ +Q
Sbjct: 181 VADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQS 240
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKI 651
+L I + + + +AL +D L N +
Sbjct: 241 LLGISGDEEVKALAEALLAKDLKAALRTLNAV 272
|
Length = 585 |
| >gnl|CDD|237870 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 276 bits (707), Expect = 2e-81
Identities = 135/360 (37%), Positives = 214/360 (59%), Gaps = 16/360 (4%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
LA KYRPS+F L+GQ+ + + L NA ++ + L G GVGKTT +RI++ CLNC
Sbjct: 3 LALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
G TS PCG C C+ I N D IE+DAAS ++++ +LE + Y PI++++
Sbjct: 63 N-----GPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKF 117
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
K+Y+IDEVHML++ AFNA+LKTLEEP ++KFILATTE +KIP+T++SRC +F+L+K+
Sbjct: 118 KVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPT 177
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEM 620
+V +L I KENI+ + +L LIA + GSMR+AL L +QA YS+ KI+ S++++
Sbjct: 178 DKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDL 237
Query: 621 LSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYS--IVLKDLSLLLHQISLIQIS 678
L +D+ L +++A+ D S N + + I+L+ + ++++I I+
Sbjct: 238 LGCVDKHILEDLVEAILLGD---AQSALNVFRELCNTSNPVIILEGMLQIIYEICYFSIT 294
Query: 679 PEILIKDSPNYNEIIQLSKKFNIEQIQLF---YQISIHGRNELELAPDEYAGFTMTLLRM 735
EI D ++I K I +Q+ + G E++ + M ++R+
Sbjct: 295 KEI---DFLLGEDLITRIKSLKIGSTIFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRL 351
|
Length = 491 |
| >gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 279 bits (715), Expect = 4e-81
Identities = 123/262 (46%), Positives = 167/262 (63%), Gaps = 4/262 (1%)
Query: 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLN 438
+V ARKYRPS F +++GQ ++ +L NA+ +L HAYLF G RGVGKTT +RI AK +N
Sbjct: 5 IVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64
Query: 439 CIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINA 498
C + +G + C +C CV + + E+DAAS ++++ L+EQ P
Sbjct: 65 CQNLTADG----EACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIG 120
Query: 499 RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM 558
+YKIY+IDEVHML+ AFNA LKTLEEPP Y FILATTE KI T+LSRC F+ ++
Sbjct: 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRI 180
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
DIVN+L Y+ +KE I E ALN+IA A G MRDALS+ DQ ++++ IT S+
Sbjct: 181 QVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVI 240
Query: 619 EMLSIIDQKYLIQILDALAEQD 640
E L+I+D Y ++ DAL
Sbjct: 241 ENLNILDYDYYFRLTDALLAGK 262
|
Length = 614 |
| >gnl|CDD|235845 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 268 bits (686), Expect = 8e-78
Identities = 125/357 (35%), Positives = 207/357 (57%), Gaps = 25/357 (7%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
A K RP +FN+L GQ+ + ++L ++++ ++ +AY+F+G RGVGKT+ +R A+CLNC
Sbjct: 5 GTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
+ G T PCG+CS C IDN +D IE+D AS + ++ Q+ E+ ++ P ++R
Sbjct: 65 VN-----GPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
Y++Y+IDEVHML++ AFNA+LKT+EEPP YI FI ATTE K+P T+ SRC FN + +
Sbjct: 120 YRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLS 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I N L + ++ IK+E AL IA + GS+RDA +L DQ +++S ITL ++
Sbjct: 180 LEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRS 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQ--I 677
+ + ++L ++ ++ +D +L + + + + +S L D ++ ++ I
Sbjct: 240 KMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGI 299
Query: 678 SPEILIKDSPNYNEIIQLSKK---FNIEQI--------QLF--YQISIHGRNELELA 721
E I +L +K F++ QI + + Q S++ R ELE+
Sbjct: 300 KNEAFIGIKAE-----RLPEKLREFDLSQIERAISVLLETYRDLQFSVNPRYELEIN 351
|
Length = 563 |
| >gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 5e-76
Identities = 135/326 (41%), Positives = 211/326 (64%), Gaps = 17/326 (5%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
L RKYRP F+ ++GQ+HI ++L N + ++ HAYLF+G RG GKT++++I A LNC
Sbjct: 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
+ +PC +C ++N +D IEMDAAS G++E+ +L+E P ++Y
Sbjct: 68 ----HKTDLLEPCQEC--IENVNNS--LDIIEMDAASNNGVDEIRELIENVKNLPTQSKY 119
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
KIY+IDEVHML+ AFNA+LKTLEEPPK++ FILATTE KIP+T+LSR +FN +++
Sbjct: 120 KIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISE 179
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEM 620
+IV+ L +IL KENI +E +AL LIA + GS+RDALS+ +Q + + KITL +++E+
Sbjct: 180 DEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEEL 239
Query: 621 LSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPE 680
++ + LI +L+ L +D +L+I N+I+ D LLL ISLI + E
Sbjct: 240 FGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQG-------IDPELLL--ISLINLVKE 290
Query: 681 ILIKDSPNYNEIIQLSKKFNIEQIQL 706
+I + N +++ + ++E++++
Sbjct: 291 FIIFNKTKDNSLLEYYSEEDLEKLKI 316
|
Length = 725 |
| >gnl|CDD|184919 PRK14955, PRK14955, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 257 bits (658), Expect = 5e-76
Identities = 118/277 (42%), Positives = 166/277 (59%), Gaps = 8/277 (2%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
V+ARKYRP F + Q HI++++ N+L R+ H Y+F+G RGVGKTT +R+ AK +NC
Sbjct: 5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64
Query: 440 IGIDGNGGI---TSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPI 496
+ + ++PCG+C C D G ++ E DAAS ++++ L E Y P
Sbjct: 65 QRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQ 124
Query: 497 NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLK 556
RY++Y+IDEVHML+ AFNA LKTLEEPP + FI ATTE KIP T+ SRC +FN K
Sbjct: 125 KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFK 184
Query: 557 KMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEK----- 611
++ +I L I E I + AL LI AQGSMRDA S+ DQ I +S E
Sbjct: 185 RIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGEGS 244
Query: 612 ITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIA 648
I + + E+L+ ID ++ + DA+A+ D +L +A
Sbjct: 245 IRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVA 281
|
Length = 397 |
| >gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 256 bits (655), Expect = 3e-73
Identities = 116/292 (39%), Positives = 185/292 (63%), Gaps = 5/292 (1%)
Query: 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
++ RKYRP NF +IGQ I K L+NA+ +L HAY+F+G RG+GKT+I++I AK +
Sbjct: 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62
Query: 438 NCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPIN 497
NC+ +G C CSVC I+ +D +E+DAAS G++E+ +++ Y P
Sbjct: 63 NCLNPK-DGDC----CNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTT 117
Query: 498 ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKK 557
+YK+Y+IDE HML+ A+NA+LKTLEEPPK++ FI ATTE QKIP+T++SRC ++N KK
Sbjct: 118 FKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKK 177
Query: 558 MLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617
+ + ++ L I KE IK E +A++ IA A GS+RD LS+ DQ + + +I + +
Sbjct: 178 LNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDI 237
Query: 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLL 669
+ ++D I +++ + + D + ++ N++E +++ +DL LL
Sbjct: 238 NKTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLL 289
|
Length = 605 |
| >gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 3e-73
Identities = 120/339 (35%), Positives = 196/339 (57%), Gaps = 9/339 (2%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
L +YRP F + GQ + L A + R+ AYLF+GTRGVGKTTI+RI AK LNC
Sbjct: 6 LTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC- 64
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
T +PC C C K+ G +D +E+D AS RGI++ +L E YAP+ RY
Sbjct: 65 ----ETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRY 120
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
K+++IDE HMLT AFNA+LKTLEEPP + F+LATTEP K P+T++SRC F ++
Sbjct: 121 KVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSE 180
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEM 620
+ +L +L +E + ++ +A+ LIA A GS+RD++SL Q + ++T++ + +
Sbjct: 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240
Query: 621 LSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPE 680
L + Q+ +++++ALA QD + ++ ++ + L++L + +++ + E
Sbjct: 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGE 300
Query: 681 ILIK--DSP--NYNEIIQLSKKFNIEQIQLFYQISIHGR 715
+ D P + + +K+F I +Q+++ G+
Sbjct: 301 AALASLDLPEDEARQWLGWAKRFEPAHIHACWQMTLEGQ 339
|
Length = 624 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 2e-72
Identities = 112/282 (39%), Positives = 163/282 (57%), Gaps = 38/282 (13%)
Query: 379 VVLA--RKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKC 436
+ LA R+YRP+ F +IGQ H+++ L ALD R++HAYLF+G RG GKT+ +RILA+
Sbjct: 1 MALALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARS 60
Query: 437 LNCIGIDGNGGITSQPCGKCSVCVKI--DNGCFMDYIEMDAASTRGINEMAQLLEQTIYA 494
LNC+ G TS PCG+C CV + +D E+DAAS G+++ +L E+ +A
Sbjct: 61 LNCVE-----GPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFA 115
Query: 495 PINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFN 554
P +RYKI++IDE HM+T FNA+LK +EEPP+++KFI ATTEP K+ T+ SR
Sbjct: 116 PAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRT---- 171
Query: 555 LKKMLHH------------DIVNNLCYILNKENIKFETSALNLI--ATGAQGSMRDALSL 600
HH + +C +E + E L L+ A G GS+RD+LS+
Sbjct: 172 -----HHYPFRLVPPEVMRGYLERIC---AQEGVPVEPGVLPLVIRAGG--GSVRDSLSV 221
Query: 601 TDQAINYSS-EKITLNSMQEMLSIIDQKYLIQILDALAEQDG 641
DQ + + E +T +L + D + + +DALA DG
Sbjct: 222 LDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALAAGDG 263
|
Length = 824 |
| >gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 3e-72
Identities = 116/273 (42%), Positives = 163/273 (59%), Gaps = 17/273 (6%)
Query: 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLN 438
VV ARKYRP F+ ++GQ+HI+ +L+NA++ L A LF G RGVGKTT +RILA+ +N
Sbjct: 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64
Query: 439 CIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINA 498
G D + + E+DAAS ++++ L++Q P
Sbjct: 65 QPGYDDP-----------------NEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTG 107
Query: 499 RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM 558
+YKIY+IDEVHML+ AFNA LKTLEEPP + FILATTE KI T+LSRC F+ K++
Sbjct: 108 KYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRI 167
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
DI +L I KE IKFE AL++IA A G++RDALS+ D+ + + + IT ++
Sbjct: 168 TIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVT 227
Query: 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKI 651
E L+I+D I + D + E +L N+I
Sbjct: 228 ENLNILDYDTYINVTDLILENKIPELLLAFNEI 260
|
Length = 367 |
| >gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 253 bits (647), Expect = 5e-72
Identities = 123/277 (44%), Positives = 169/277 (61%), Gaps = 8/277 (2%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
V+ARKYRPS F + Q HI+ ++ N+L R+ H Y+F+G RGVGKTT +R+ AK +NC
Sbjct: 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64
Query: 440 IG-IDGNGGI--TSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPI 496
ID + ++PCG+C C D G ++ E DAAS ++++ QL E Y P
Sbjct: 65 QRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQ 124
Query: 497 NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLK 556
RY++Y+IDEVHML+ AFNA LKTLEEPP + FI ATTE KIP T+ SRC +FN K
Sbjct: 125 KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFK 184
Query: 557 KMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS-----SEK 611
++ +I + L I E I+ + AL LIA AQGSMRDA S+ DQ I +S +
Sbjct: 185 RIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEAEKV 244
Query: 612 ITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIA 648
I + E+L+ ID + + DA+AE D +L +A
Sbjct: 245 IAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVA 281
|
Length = 620 |
| >gnl|CDD|180643 PRK06645, PRK06645, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 1e-70
Identities = 130/384 (33%), Positives = 229/384 (59%), Gaps = 11/384 (2%)
Query: 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLN 438
+ ARKYRPSNF L GQ + K L + RL YL TG RGVGKTT +RI+AK +N
Sbjct: 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68
Query: 439 CIG-IDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPIN 497
C I N I + C +C+ C+ +N D IE+DAAS ++++ +++E Y P+
Sbjct: 69 CSALITENTTIKT--CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQ 126
Query: 498 ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKK 557
++KI++IDEVHML+ AFNA+LKTLEEPP +I FI ATTE QKIP T++SRC +++L++
Sbjct: 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRR 186
Query: 558 MLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEK---ITL 614
+ +I L YI +EN+K + AL +IA ++GS RDA+S+ DQA + S++ I+
Sbjct: 187 LSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISP 246
Query: 615 NSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISL 674
+ +ML ++D +I+ ++ + ++ +++ NK+ +++ I ++ +S + ++
Sbjct: 247 QVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNK 306
Query: 675 IQISPEILIKDSPNYNEIIQ-LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLL 733
+++ P + ++N+ + + K ++ + + +QI G E++++ ++ M ++
Sbjct: 307 VKMLPNYSLPIYESFNDRTKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVI 366
Query: 734 RMLVFQTLHNHLDYN----NLKNS 753
+ + +L D++ NL S
Sbjct: 367 KSIYSTSLPLLTDFDGNNQNLNQS 390
|
Length = 507 |
| >gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 1e-69
Identities = 110/268 (41%), Positives = 166/268 (61%), Gaps = 7/268 (2%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
L ++ RP F+ ++GQ H+ + L+ AL + RL HAYLF+G RGVGKTT +R++A +NC
Sbjct: 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
G D +PCG+C C+ + G D +E+DAAS + ++ L E+ + AP+
Sbjct: 64 GED------PKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGR 117
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
K+Y++DE HM++ AFNA+LKTLEEPP+++ FILATTEP+K+P T+LSR F +++
Sbjct: 118 KVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTE 177
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEM 620
+I L +L E + E AL L+A A G+MRDA SL ++ + + +T ++E
Sbjct: 178 EEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGT-PVTRKQVEEA 236
Query: 621 LSIIDQKYLIQILDALAEQDGNLILSIA 648
L + Q+ L I ALA+ D LS A
Sbjct: 237 LGLPPQERLRGIAAALAQGDAAEALSGA 264
|
Length = 504 |
| >gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 2e-65
Identities = 136/350 (38%), Positives = 196/350 (56%), Gaps = 27/350 (7%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VL+RKYRP F +I Q+ +L NAL ++ HAY+F G RGVGKTTI+RILAK LNC
Sbjct: 7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GN +PC +C+ C++I G D +E+DAAS RGI + +L + +AP+ +
Sbjct: 67 ENPIGN-----EPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGK 121
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM- 558
YK+Y+IDEVHMLT +FNA+LKTLEEPP +I FILATTE KIP T+LSRC F KK+
Sbjct: 122 YKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVP 181
Query: 559 --LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNS 616
+ D LC EN++++ L IA GS+RD LS +QAI ++ K+T
Sbjct: 182 LSVLQDYSEKLC---KIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVK 238
Query: 617 MQEMLSIIDQKYLIQILDALAEQDGNL-ILSIANK-----IEIYNLSYSIVLKDLSLLLH 670
+++M+ ++L + +L + D + L I +IY + + +L L
Sbjct: 239 IRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLI 298
Query: 671 QISL-----IQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGR 715
+ SL + E L K ++ + S K N +LF I+ +
Sbjct: 299 RDSLADRESVNFPKEDLQKMKSDFENVD--SSKLNFLSGKLF---EIYEK 343
|
Length = 484 |
| >gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 6e-65
Identities = 100/265 (37%), Positives = 155/265 (58%), Gaps = 10/265 (3%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
L RKYRP+ F ++GQ H+++ L +ALD R++HAYLF+G RG GKT+ +RILA+ LNC
Sbjct: 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62
Query: 441 GIDGNGGITSQPCGKCSVCVKI---DNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPIN 497
G T+ PCG C CV + G +D +E+DAAS G+++ +L ++ YAP
Sbjct: 63 Q-----GPTATPCGVCESCVALAPNGPGS-IDVVELDAASHGGVDDTRELRDRAFYAPAQ 116
Query: 498 ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKK 557
+RY+I+++DE HM+T FNA+LK +EEPP+++ FI ATTEP+K+ T+ SR + +
Sbjct: 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRL 176
Query: 558 MLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAI-NYSSEKITLNS 616
+ + + I +E + + + L+ GS RD LS+ DQ + + +T
Sbjct: 177 LPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQR 236
Query: 617 MQEMLSIIDQKYLIQILDALAEQDG 641
+L D + +DALA D
Sbjct: 237 ALGLLGATDVALIDDAVDALAADDA 261
|
Length = 584 |
| >gnl|CDD|221959 pfam13177, DNA_pol3_delta2, DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-38
Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 6/165 (3%)
Query: 395 GQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454
GQ + K L N++ K +L HAYLF+G GVGK ++ AK L C + PCG
Sbjct: 1 GQPKVIKLLKNSIKKNKLSHAYLFSGPDGVGKLELALEFAKALFCENPQDDE-----PCG 55
Query: 455 KCSVCVKIDNGCFMDYIEMDAASTR-GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH 513
+C C +I+NG D I ++ I+++ +L+E+ P + K+Y+I++ +T
Sbjct: 56 ECKSCKRIENGNHPDVIIIEPEGKSIKIDQIRELIEEFSKKPFEGKKKVYIIEDAEKMTE 115
Query: 514 HAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM 558
A NA+LKTLEEPP+ FIL T+ P K+ T+ SRC N K +
Sbjct: 116 SAANALLKTLEEPPENTYFILLTSNPNKLLPTIRSRCQVINFKPL 160
|
DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA. Length = 161 |
| >gnl|CDD|233087 TIGR00678, holB, DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 3e-37
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 14/195 (7%)
Query: 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460
+ L AL+K RL HAYLF G GVGK ++ LAK L C G +PCG+C C
Sbjct: 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGG-----GEPCGECPSCR 56
Query: 461 KIDNGCFMDY--IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNA 518
I+ G D +E + S ++++ +L+E P + ++ +I++ + A NA
Sbjct: 57 LIEAGNHPDLHRLEPEGQSI-KVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANA 115
Query: 519 MLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKF 578
+LKTLEEPP FIL T P+K+ T+ SRC L + + L ++ I
Sbjct: 116 LLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPP-LSEEALLQ---WLIRQGI-- 169
Query: 579 ETSALNLIATGAQGS 593
A L+ A GS
Sbjct: 170 SEEAAELLLALAGGS 184
|
This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau [DNA metabolism, DNA replication, recombination, and repair]. Length = 188 |
| >gnl|CDD|206103 pfam13932, GIDA_assoc_3, GidA associated domain 3 | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 2e-29
Identities = 42/70 (60%), Positives = 55/70 (78%)
Query: 1260 YEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGV 1319
YEGYI RQ ++EK K EN ++P ++DY +I LS EAR+KL K +PETIGQASRISGV
Sbjct: 3 YEGYIERQQQQIEKAKRLENKRIPEDIDYARISGLSNEAREKLAKIRPETIGQASRISGV 62
Query: 1320 TPAALTLLLI 1329
TPA +++LL+
Sbjct: 63 TPADISVLLV 72
|
The GidA associated domain 3 is a motif that has been identified at the C-terminus of protein GidA. It consists of 4 helices, the last three being rather short and forming small bundle at the top end of the first longer one. It is here named helical domain 3 because in GidA it is preceded by two other C-terminal helical domain (based on crystal structures). GidA is an tRNA modification enzyme found in bacteria and mitochondrial. Based on mutational analysis this domain has been suggested to be implicated in binding of the D-stem of tRNA and to be responsible for the interaction with protein MnmE. Structures of GidA in complex with either tRNA or MnmE are missing. Reported to bind to Pfam family MnmE, pfam12631. Length = 72 |
| >gnl|CDD|181214 PRK08058, PRK08058, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-24
Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455
Q + K L N++ K RL HAYLF G +G GK + LAK L C+ +G +PCG
Sbjct: 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGV-----EPCGT 65
Query: 456 CSVCVKIDNGCFMD--YIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH 513
C+ C +ID+G D + D S + +++ L E+ + + + K+Y+I+ +T
Sbjct: 66 CTNCKRIDSGNHPDVHLVAPDGQSIK-KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA 124
Query: 514 HAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRC 550
A N++LK LEEP IL T +I T+LSRC
Sbjct: 125 SAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRC 161
|
Length = 329 |
| >gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 5e-20
Identities = 74/278 (26%), Positives = 119/278 (42%), Gaps = 40/278 (14%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP+ ++GQ+ + + L A+D L H L G G GKT R LA+ L +
Sbjct: 8 KYRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARELYGDPWE 66
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMD----YIEMD-------------AASTRG-INEMA 485
N + + F D Y+ D +S +
Sbjct: 67 NN-------------FTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHV- 112
Query: 486 QLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKI--P 543
L E Y P++A YK ++D L A A+ + +E+ + +FI+AT +P K+ P
Sbjct: 113 -LKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPP 171
Query: 544 ITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQ 603
I SRC+ + ++V+ L I E + ++ L LIA A G +R A+ LT Q
Sbjct: 172 IR--SRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAI-LTLQ 228
Query: 604 AINYSSEKITLNSMQEMLSIIDQKYLI-QILDALAEQD 640
++ +IT+ + E L + +I +LDA D
Sbjct: 229 TAALAAGEITMEAAYEALGDVGTDEVIESLLDAAEAGD 266
|
Length = 337 |
| >gnl|CDD|234763 PRK00440, rfc, replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 1e-19
Identities = 67/254 (26%), Positives = 109/254 (42%), Gaps = 54/254 (21%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + ++GQ I + L + + +K + H LF G G GKTT + LA+ L
Sbjct: 10 KYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALAREL------ 62
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDY-----IEMDAASTRGIN-------EMAQLLEQT 491
+ + +E++A+ RGI+ E A+
Sbjct: 63 -----------------------YGEDWRENFLELNASDERGIDVIRNKIKEFART---- 95
Query: 492 IYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKI--PITVLS 548
AP+ A +KI +DE LT A A+ +T+E + +FIL+ KI PI S
Sbjct: 96 --APVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ--S 151
Query: 549 RCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS 608
RC F + + L YI E I+ AL I ++G MR A++ QA +
Sbjct: 152 RCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL-QAAAAT 210
Query: 609 SEKITLNSMQEMLS 622
+++T ++ ++
Sbjct: 211 GKEVTEEAVYKITG 224
|
Length = 319 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-19
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 7/169 (4%)
Query: 78 AINRLKKIFN--AEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNM 135
+L ++ + A P SG+ AN+A ++L PGD ++ + G +
Sbjct: 5 LEEKLARLLQPGNDKAVFVP-SGTGANEAALLALLGPGDEVIVDANGHGSRYWV--AAEL 61
Query: 136 SGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQ--YIDFERFYHIAKNI 193
+G + +D +E L K LI+ + S + + IAK
Sbjct: 62 AGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEY 121
Query: 194 NSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK 242
+VD A G A P AD +T + HK+L G GG +++K
Sbjct: 122 GILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|236134 PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-18
Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 390 FNTLIGQNHISKSLINALDKKRLH---------HAYLFTGTRGVGKTTISRILAKCLNCI 440
++ L+GQ + L A R HA+LFTG G G++ +R A L C
Sbjct: 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMD--YIEMDAASTRGINEMAQLLEQTIYAPINA 498
D G CG+C C + G D + + S G++E+ +L+ P
Sbjct: 64 DPDEPG------CGECRACRTVLAGTHPDVRVVAPEGLSI-GVDEVRELVTIAARRPSTG 116
Query: 499 RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRC 550
R++I VI++ LT A NA+LK +EEPP ++L P+ + T+ SRC
Sbjct: 117 RWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRC 168
|
Length = 394 |
| >gnl|CDD|152604 pfam12169, DNA_pol3_gamma3, DNA polymerase III subunits gamma and tau domain III | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 3e-17
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 612 ITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSY--SIVLKDLSLLL 669
++ +++ML + D+ +I +L+A+ E D L+ + Y +VL+DL LL
Sbjct: 1 VSAAQVRDMLGLADRGRVIDLLEAILEGDAAAALAEFR--DQYAAGADPVVVLRDLLELL 58
Query: 670 HQISLIQISPEILIKDSPNYNEIIQ---LSKKFNIEQIQLFYQISIHGRNELELAPDEYA 726
H ++ ++I+P+ S E + L+KK + E + +Q+ + G E++ APD
Sbjct: 59 HLLTRLKIAPDAADDLSLPEEERERIAALAKKLSPEVLSRLWQMLLKGIEEVKNAPDPRQ 118
Query: 727 GFTMTLLRMLVFQTL 741
M LLR+ L
Sbjct: 119 AAEMALLRLAYAADL 133
|
This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. Length = 143 |
| >gnl|CDD|181538 PRK08699, PRK08699, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 7e-16
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 30/163 (18%)
Query: 411 RLHHAYLFTGTRGVGKTTISRILAKCLNC-IGIDGNGGITSQPCGKCSVCVKIDNGCFMD 469
R +A+LF G +G+GKT +R A+ L C G+ +PCG+C C G D
Sbjct: 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGH-----KPCGECMSCHLFGQGSHPD 73
Query: 470 YIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH--------------- 514
+ E+ + +LL+ I A +ID V++ +
Sbjct: 74 FYEI-TPLSDEPENGRKLLQIKIDAVRE------IIDNVYLTSVRGGLRVILIHPAESMN 126
Query: 515 --AFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNL 555
A N++LK LEEPP + F+L + K+ T+ SRC + L
Sbjct: 127 LQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVL 169
|
Length = 325 |
| >gnl|CDD|180215 PRK05707, PRK05707, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 8e-16
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 407 LDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGC 466
+ R HAYL G G+GK ++ LA L C G G CG C C + G
Sbjct: 16 AGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGA-----CGSCKGCQLLRAGS 70
Query: 467 FMDYIEM---DAASTRGINEMAQL---LEQTIYAPINAR---YKIYVIDEVHMLTHHAFN 517
D + +A T ++++ +L + QT A+ K+ +I+ + +A N
Sbjct: 71 HPDNFVLEPEEADKTIKVDQVRELVSFVVQT------AQLGGRKVVLIEPAEAMNRNAAN 124
Query: 518 AMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQF 553
A+LK+LEEP +L + +P ++ T+ SRC Q
Sbjct: 125 ALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQ 160
|
Length = 328 |
| >gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 9e-15
Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 47/255 (18%)
Query: 381 LARKYRPSNFNTLIGQNHI---SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
LA + RP + + ++GQ H+ K L A++ LH L+ G G GKTT++R++A
Sbjct: 14 LAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILW-GPPGTGKTTLARLIAGTT 72
Query: 438 NCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPIN 497
N + + A ++ G+ ++ +++E+ +
Sbjct: 73 NA-----------------------------AFEALSAVTS-GVKDLREIIEEARKNRLL 102
Query: 498 ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPIT--VLSRCIQFNL 555
R I +DE+H +A+L +E I I ATTE + +LSR F L
Sbjct: 103 GRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENPSFELNPALLSRARVFEL 160
Query: 556 KKMLHHDI-------VNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS 608
K + DI + + L + I + AL+ + + G R AL+L + A +
Sbjct: 161 KPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSA 220
Query: 609 S--EKITLNSMQEML 621
E + L ++E+L
Sbjct: 221 EPDEVLILELLEEIL 235
|
Length = 436 |
| >gnl|CDD|236011 PRK07399, PRK07399, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 9e-15
Identities = 52/184 (28%), Positives = 75/184 (40%), Gaps = 35/184 (19%)
Query: 390 FNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGIT 449
F LIGQ + L A+ + R+ AYLF G GVG+ ++ A C G ++
Sbjct: 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGR----KLAALCF------IEGLLS 52
Query: 450 SQPCGKCSVCVKIDNGCFMD-------YIEMDAASTRGINEMAQL---------LEQ--- 490
K +++ G D Y T E A L LEQ
Sbjct: 53 QGSPSKNIRR-RLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIRE 111
Query: 491 --TIYA--PINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITV 546
+ P+ A K+ VI++ + A NA+LKTLEEP IL P+ + T+
Sbjct: 112 IKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGT-LILIAPSPESLLPTI 170
Query: 547 LSRC 550
+SRC
Sbjct: 171 VSRC 174
|
Length = 314 |
| >gnl|CDD|224127 COG1206, Gid, NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-14
Identities = 44/112 (39%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 1017 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PCNLKSSLETKQIHGLFFAG 1075
G T L + Q + + I G++NA +R G + N P L +L+ K+ LFFAG
Sbjct: 282 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAG 341
Query: 1076 QINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKG 1127
QI G GY E+A+ GLLAG+NAA + +P IP A LG LV+ + G
Sbjct: 342 QITGVEGYVESAASGLLAGINAARLALGEEPLIPPPTTA-LGALVNYITGAG 392
|
Length = 439 |
| >gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Score = 77.0 bits (191), Expect = 1e-14
Identities = 67/257 (26%), Positives = 106/257 (41%), Gaps = 58/257 (22%)
Query: 381 LARKYRPSNFNTLIGQNHI---SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
LA + RP + ++GQ H+ K L ++ RL + G G GKTT++RI+A
Sbjct: 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSM-ILWGPPGTGKTTLARIIAGAT 60
Query: 438 NCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPIN 497
+ + + A ++ G+ ++ +++E+
Sbjct: 61 DA-----------------------------PFEALSAVTS-GVKDLREVIEEARQRRSA 90
Query: 498 ARYKIYVIDEVHMLTHHAFN-----AMLKTLEEPPKYIKFILATTE-PQKIPITV----L 547
R I IDE+ H FN A+L +E+ I I ATTE P V L
Sbjct: 91 GRRTILFIDEI-----HRFNKAQQDALLPHVED--GTITLIGATTENPS---FEVNPALL 140
Query: 548 SRCIQFNLKKMLHHDIVNNLCYILNKEN---IKFETSALNLIATGAQGSMRDALSLTDQA 604
SR F LK + DI L L + ++ + AL+ +A A G R AL+L + A
Sbjct: 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200
Query: 605 INYSSEKITLNSMQEML 621
+ ITL ++E L
Sbjct: 201 AL-GVDSITLELLEEAL 216
|
Length = 413 |
| >gnl|CDD|235898 PRK06964, PRK06964, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 9e-14
Identities = 51/176 (28%), Positives = 72/176 (40%), Gaps = 33/176 (18%)
Query: 409 KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFM 468
+ RL HA L G G+GK ++ LA+ L C +G +PCG C+ C G
Sbjct: 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDG----EPCGTCAACNWFAQGNHP 72
Query: 469 DYI-----EMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHML-------THH-- 514
DY + A + +E + A K I++V L TH
Sbjct: 73 DYRIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGG 132
Query: 515 ---------------AFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNL 555
A NA+LKTLEEPP F+L + ++ T+LSRC QF +
Sbjct: 133 ARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPM 188
|
Length = 342 |
| >gnl|CDD|180738 PRK06871, PRK06871, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 49/168 (29%), Positives = 66/168 (39%), Gaps = 23/168 (13%)
Query: 398 HISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457
+ + A + HHA LF G+G + R LA+ L C G+ QPCG+C
Sbjct: 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-----QPCGQCH 63
Query: 458 VCVKIDNGCFMDY----------IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDE 507
C G D+ I +D R INE Q +Y I
Sbjct: 64 SCHLFQAGNHPDFHILEPIDNKDIGVD--QVREINEKVSQHAQQ-----GGNKVVY-IQG 115
Query: 508 VHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNL 555
LT A NA+LKTLEEP F+L + T+ SRC + +
Sbjct: 116 AERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLI 163
|
Length = 325 |
| >gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 63/239 (26%), Positives = 98/239 (41%), Gaps = 32/239 (13%)
Query: 387 PSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL--------- 437
PS L G L A + +LHHA LF G G+GK T++ LA +
Sbjct: 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEA 78
Query: 438 --NCIGIDGNGGITSQPCGKCSVCV-----KID--NGCFMDYIEMDAASTRGINEMAQLL 488
D + Q + D G F I +D I + L
Sbjct: 79 PETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-----IRRVGHFL 133
Query: 489 EQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLS 548
QT + ++I +ID + +A NA+LKTLEEPP FIL + ++ T+ S
Sbjct: 134 SQT---SGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRS 190
Query: 549 RCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607
RC +LK + ++ L ++ + + E + + ++GS+R AL L +NY
Sbjct: 191 RCQPISLKPLDDDELKKALSHLGSSQGSDGEITE--ALLQRSKGSVRKALLL----LNY 243
|
Length = 351 |
| >gnl|CDD|235416 PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 8e-13
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 1017 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PCNLKSSLETKQIHGLFFAG 1075
G T L + Q + + I G++NA +R G + N P L +L+ K+ LFFAG
Sbjct: 278 GFQTKLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAG 337
Query: 1076 QINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLV 1120
QI G GY E+A+ GLLAG+NAA + ++P IP A LG L+
Sbjct: 338 QITGVEGYVESAASGLLAGINAARLALGKEPVIPPPTTA-LGALL 381
|
Length = 436 |
| >gnl|CDD|102059 PRK05917, PRK05917, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 495 PINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFN 554
P + YKIY+I E +T A +A LK LE+PP++ IL + +PQ++P T+ SR + +
Sbjct: 91 PYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIH 150
Query: 555 LKKMLHHDIVNNLCYILNKENIKF 578
+ + +KE+I +
Sbjct: 151 IPMEEKTLV--------SKEDIAY 166
|
Length = 290 |
| >gnl|CDD|181190 PRK07993, PRK07993, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-11
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 21/157 (13%)
Query: 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDY 470
R HHA L G+G + L++ L C G+ + CG C C + G DY
Sbjct: 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH-----KSCGHCRGCQLMQAGTHPDY 76
Query: 471 IEMD---AASTRGINEMAQLLEQTIYAPINARY---KIYVIDEVHMLTHHAFNAMLKTLE 524
+ S+ G++ + ++ E +Y +AR K+ + + +LT A NA+LKTLE
Sbjct: 77 YTLTPEKGKSSLGVDAVREVTE-KLYE--HARLGGAKVVWLPDAALLTDAAANALLKTLE 133
Query: 525 EPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHH 561
EPP+ F LA EP ++ T+ SRC LH+
Sbjct: 134 EPPENTWFFLACREPARLLATLRSRC-------RLHY 163
|
Length = 334 |
| >gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-11
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 469 DYIEMDAASTRGINEM-AQLLEQTIYAPI-NARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+++E++A+ RGIN + ++ E PI A +KI +DE LT A A+ +T+E
Sbjct: 598 NFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF 657
Query: 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586
++FIL+ KI + SRC F + + DI L YI E ++ L I
Sbjct: 658 SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAI 717
Query: 587 ATGAQGSMRDALSLTDQAINYSSEKIT 613
A+G MR A+++ QA +KIT
Sbjct: 718 LYIAEGDMRRAINIL-QAAAALDDKIT 743
|
Length = 846 |
| >gnl|CDD|180132 PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 28/194 (14%)
Query: 390 FNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA-KCLNCIGIDGNGGI 448
F+T+IG +I + N++ K R HA++ G G+GK+ +++ +A K L
Sbjct: 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILG---------- 52
Query: 449 TSQPCGKCSVCVKIDNGCFMDYIEMDAASTR--GINEMAQLLEQTIYAPINARYKIYVID 506
K ++D IE + + G++++ ++E+ P K+ +I
Sbjct: 53 ------------KSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIY 100
Query: 507 EVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDI--- 563
+T A NA LKT+EEPPK + IL ++I T+ SRC + L ++ +I
Sbjct: 101 NSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKF 160
Query: 564 VNNLCYILNKENIK 577
++ + +E K
Sbjct: 161 ISYKYNDIKEEEKK 174
|
Length = 313 |
| >gnl|CDD|129243 TIGR00137, gid_trmFO, tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 4e-10
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 1017 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PCNLKSSLETKQIHGLFFAG 1075
G T+L + Q + + I G++NA +R G + N P L +SL K LFFAG
Sbjct: 277 GFQTNLRWGEQKRVFRLIPGLENAEFVRMGVMHRNTFINSPQLLTASLHFKDRQTLFFAG 336
Query: 1076 QINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITK 1126
Q+ G GY + + G LAG+NAA + + +G L + + T
Sbjct: 337 QLTGVEGYVASTAGGWLAGINAARLALGEPLLTLPAETM-MGALFNYISTA 386
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO [Protein synthesis, tRNA and rRNA base modification]. Length = 433 |
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-09
Identities = 62/268 (23%), Positives = 110/268 (41%), Gaps = 52/268 (19%)
Query: 384 KYRPSNFNTLIGQNHISKSL---INALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
KYRP + ++G + L I + K + A L G GVGKT+++ LA
Sbjct: 7 KYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG-- 64
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI-----YAP 495
+ IE++A+ R A ++E+
Sbjct: 65 ---------------------------WEVIELNASDQRT----ADVIERVAGEAATSGS 93
Query: 496 I-NARYKIYVIDEVHMLTHHA----FNAMLKTLEEPPKYIKFILATTEPQKIPI-TVLSR 549
+ AR K+ ++DEV + + A+L+ +++ + I IL +P + + +
Sbjct: 94 LFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPI--ILTANDPYDPSLRELRNA 151
Query: 550 CIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTD-QAINYS 608
C+ K++ IV L I KE I+ + AL IA + G +R A + D QAI
Sbjct: 152 CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSA--INDLQAIAEG 209
Query: 609 SEKITLNSMQEMLSIIDQKYLIQILDAL 636
K+TL ++ + ++ + LDA+
Sbjct: 210 YGKLTLEDVKTLGRRDREESIFDALDAV 237
|
Length = 482 |
| >gnl|CDD|180916 PRK07276, PRK07276, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
Query: 407 LDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGC 466
L++ RL+HAYLF+G ++ LA+ L C +G PCG C C I+ G
Sbjct: 18 LEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEG-----VLPCGHCRSCRLIEQGE 70
Query: 467 FMDY--IEMDAA--STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKT 522
F D IE T I E+ + Q+ Y + ++++I + + +A N++LK
Sbjct: 71 FSDVTVIEPQGQVIKTDTIRELVKNFSQSGY---EGKQQVFIIKDADKMHVNAANSLLKV 127
Query: 523 LEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKK 557
+EEP I L T + K+ T+ SR F+ K
Sbjct: 128 IEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK 162
|
Length = 290 |
| >gnl|CDD|180394 PRK06090, PRK06090, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 25/161 (15%)
Query: 406 ALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNG 465
LD R+ A L G+G ++ + ++ L C S+ CG C C + +G
Sbjct: 18 GLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNY------QSEACGFCHSCELMQSG 71
Query: 466 CFMDY-----------IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH 514
D I ++ R N +AQ Q +N Y+++VI+ +
Sbjct: 72 NHPDLHVIKPEKEGKSITVE--QIRQCNRLAQESSQ-----LNG-YRLFVIEPADAMNES 123
Query: 515 AFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNL 555
A NA+LKTLEEP F+L T +++ T++SRC Q+ +
Sbjct: 124 ASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVV 164
|
Length = 319 |
| >gnl|CDD|236022 PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 9e-08
Identities = 48/189 (25%), Positives = 72/189 (38%), Gaps = 48/189 (25%)
Query: 393 LIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452
L G +L++A RLHHA+L G +G+GK T++ +A+ L G G
Sbjct: 21 LFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDG---AV 77
Query: 453 CGKCSVCVKIDNGCFMDYIEMDAAS-------TRGINEMAQLLEQTIYAPINARYKIYVI 505
S+ + D+ + A + R NE + L I +
Sbjct: 78 PPPTSLAIDPDHPVAR---RIAAGAHGGLLTLERSWNEKGKRLRTVI-----------TV 123
Query: 506 DEVHMLTH------------------------HAFNAMLKTLEEPPKYIKFILATTEPQK 541
DEV L +A NA+LK LEEPP F+L + P +
Sbjct: 124 DEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPAR 183
Query: 542 IPITVLSRC 550
+ T+ SRC
Sbjct: 184 LLPTIRSRC 192
|
Length = 365 |
| >gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 30/219 (13%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP+ + ++G N + S + + + + +G G GKTT LA L +G
Sbjct: 6 KYRPTKLDDIVG-NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL--LG-- 60
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGI----NEMAQLLEQTIYAPINAR 499
P K +V +E++A+ RGI N++ ++ + P R
Sbjct: 61 --------PNYKEAV------------LELNASDDRGIDVVRNKIKMFAQKKVTLPP-GR 99
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+KI ++DE +T A A+ +T+E +F LA KI + SRC ++
Sbjct: 100 HKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLS 159
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDAL 598
+I+ L ++ E + + L I A G MR AL
Sbjct: 160 DQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQAL 198
|
Length = 319 |
| >gnl|CDD|181551 PRK08769, PRK08769, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 3e-07
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 17/162 (10%)
Query: 404 INALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463
+ ALD RL H L G G+GK ++ LA+ + G D +Q + I
Sbjct: 17 VAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDP---AAAQRTRQL-----IA 68
Query: 464 NGCFMD-----YIEM---DAASTR-GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH 514
G D +I D T I ++ ++ ++ P ++ ++D +
Sbjct: 69 AGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRA 128
Query: 515 AFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLK 556
A NA+LKTLEEP L + +P ++P T+ SRC + K
Sbjct: 129 ACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170
|
Length = 319 |
| >gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 5e-07
Identities = 64/269 (23%), Positives = 93/269 (34%), Gaps = 63/269 (23%)
Query: 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLN 134
E++A + EAA V SG AN V ++ GD I+ H
Sbjct: 53 EELA-----EFHGKEAALVF-SSGYAANDGVLSTLAGKGDLII---SDSLNH-------- 95
Query: 135 MSGKWFNSICYG--LNKKEKIDYK--KVEYLAK-------KNKPKLIIA-------GASA 176
SI G L+ +K +K +E L K KLI+ G A
Sbjct: 96 ------ASIIDGIRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIA 149
Query: 177 YSQYIDFERFYHIAKNINSYFMVDMAHYAGLIA--------AGEYPNPVPFADFITSTTH 228
+AK + VD AH G+ G + V D I T
Sbjct: 150 -----PLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDV---DIIMGTLG 201
Query: 229 KSLRGPRGGFILMKKKYKKIINSAVFPGI-QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQ 287
K+ G GG+I K+ + S I V AA A + + + + Q
Sbjct: 202 KAF-GAVGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQ 260
Query: 288 VVKNAKILSKILDQRGIRIVSGGTKSHII 316
+N + L + L + G + GG+ SHII
Sbjct: 261 --ENVRYLRRGLKELGFPV--GGSPSHII 285
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 6e-07
Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 30/167 (17%)
Query: 394 IGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453
+GQ ++L AL+ + L G G GKTT++R +A L G
Sbjct: 1 VGQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANELFRPGAP---------- 49
Query: 454 GKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH 513
+ ++ ++ + + + + L + A+ + IDE+ L+
Sbjct: 50 -----FLYLNASDLLEGLVVAELFGHFLVRLLFELAE------KAKPGVLFIDEIDSLSR 98
Query: 514 HAFNAMLKTLEEPPKY------IKFILATT--EPQKIPITVLSRCIQ 552
A NA+L+ LE ++ I AT + + R
Sbjct: 99 GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDI 145
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|236274 PRK08485, PRK08485, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Query: 515 AFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCI-------------QFNLKKMLHH 561
A NA+LK LEEPPK I FI+ + T+ SR I +LKK+
Sbjct: 70 AQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLK 129
Query: 562 DIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEML 621
DI L KEN + LI + + ++ + L ++ + Y + I L +
Sbjct: 130 DIY-EFLKELEKENKLSKEELKELIESLLKECVKYKIPLNEEELEYFDKAIKLADLNAKS 188
Query: 622 SII 624
S +
Sbjct: 189 SYV 191
|
Length = 206 |
| >gnl|CDD|235618 PRK05818, PRK05818, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 452 PCGKCSVCVKIDNGCFMD-YIEMDAASTRGINEMAQLLEQTIYAPINAR-YKIYVIDEVH 509
C C C+KI NG + D Y+ D + + ++ + + + KIY+I +
Sbjct: 39 FCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESNGKKIYIIYGIE 98
Query: 510 MLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQF 553
L + N++LK +EEPPK I T I T+LSRC+Q+
Sbjct: 99 KLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQY 142
|
Length = 261 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 56/336 (16%), Positives = 119/336 (35%), Gaps = 33/336 (9%)
Query: 36 ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIA--INRLKKIFNAEAANV 93
++ T AV +A+ L Y +L E +A + R + A V
Sbjct: 14 DSGTLPAVAKAEKDALAGGTRNLYGPTDGL-----PELREALAKFLGRSPVLKLDREAAV 68
Query: 94 QPHSGSQANQAV--FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSG-KWFNSICYGLNKK 150
SG+ AN F LNPGD I+ + + ++ + ++G + Y N
Sbjct: 69 VFGSGAGANIEALIFLLRLNPGDAILVPAP---TYPSYIRIFRLAGGEVVRYPLYSSNDF 125
Query: 151 EKIDYKKVEYLAKKN--KPKLIIAGASAYS---QYIDFERFYHIAKNINSYF---MVDMA 202
+D+ +E K+ K+++ S ++ E + + +VD A
Sbjct: 126 -HLDFDALEAALKEATEGNKVVLH-TSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEA 183
Query: 203 HYAGLIAAGEYPNPVPFAD-----FITSTTHKS--LRGPRGGFILMKKKYKKIINSAVFP 255
+ + + + + + K+ L G R G+IL + P
Sbjct: 184 YAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARP 243
Query: 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHI 315
L AA A++ ++ + + ++++ + L L+ G+ ++ ++
Sbjct: 244 FYSSTHLQA-AAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAAGLSVLPS--QAGF 300
Query: 316 ILVDLRNKKITGKIAESILESANIICNKNSIPNDPE 351
L+ + + +A+ +LE + S P
Sbjct: 301 FLLTGLDPEAALALAQVLLEEVGVYVTPGSSFGGPG 336
|
Length = 357 |
| >gnl|CDD|180855 PRK07132, PRK07132, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 64/315 (20%), Positives = 114/315 (36%), Gaps = 45/315 (14%)
Query: 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455
N+ K L N+ + ++ H++L I + LN + Q
Sbjct: 1 MNNWIKFLDNSATQNKISHSFLLKSNY---NEDIDEKILYFLNKFNNLQITNLNEQELPA 57
Query: 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHA 515
N D + D + + ++ + +L + ++ KI +I + ++
Sbjct: 58 --------NIILFDIFDKDLSKSEFLSAINKLYFSSFVQ---SQKKILIIKNIEKTSNSL 106
Query: 516 FNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKEN 575
NA+LKT+EEPPK F+L T K+ T++SRC FN+K+ I+ L +N
Sbjct: 107 LNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKIL----AKLLSKN 162
Query: 576 IKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDA 635
+ E + + ++ IN SE + + L+
Sbjct: 163 KEKEYNWFYA-------YIFSNFEQAEKYINKESENLLKK-------------FEEALNK 202
Query: 636 LAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQL 695
++ LIL + K+ N +LK L S+ + K+
Sbjct: 203 SLKEKYELILFLNKKLTKEN--ALFLLKLLKFFF--KSIFANKKKKNPKNIKVA---FSK 255
Query: 696 SKKFNIEQIQLFYQI 710
KKF IE +L I
Sbjct: 256 KKKFKIEFFELITII 270
|
Length = 299 |
| >gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 59/301 (19%), Positives = 110/301 (36%), Gaps = 64/301 (21%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRPS + I ++ + + K R+ + L + + G GKTT+++ L N +G +
Sbjct: 14 KYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALC---NEVGAE 70
Query: 444 GNGGITSQPCGKCSVCVKIDNG--CFMDYIEMDA---ASTRGINEMAQLLEQTIYAPINA 498
V NG C +D++ AST +
Sbjct: 71 ----------------VLFVNGSDCRIDFVRNRLTRFAST---------------VSLTG 99
Query: 499 RYKIYVIDEVHMLTHHAFNAMLKTL-EEPPKYIKFILATTEPQKIPITVLSRC--IQFNL 555
K+ +IDE L L++ E K FI+ I + SRC I F +
Sbjct: 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGV 159
Query: 556 KK-----MLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE 610
+ ++ IL E ++ + + ++A + + D ++ Y+S
Sbjct: 160 PTKEEQIEMMKQMIVRCKGILEAEGVEVD---MKVLAALVKKNFPDFRRTINELQRYAST 216
Query: 611 -KITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIE---------IYNLSYSI 660
KI +LS + + +++AL +D + ++A +Y+ Y
Sbjct: 217 GKID----AGILSEVTNSDIDDVVEALKAKDFKAVRALAPNYANDYASFVGKLYDELYPQ 272
Query: 661 V 661
V
Sbjct: 273 V 273
|
Length = 316 |
| >gnl|CDD|235833 PRK06581, PRK06581, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 481 INEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQ 540
I ++ L +T + YK+ +I ++ +A N+ LK LE+ PK L T+
Sbjct: 74 IRKLQDFLSKT---SAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAA 130
Query: 541 KIPITVLSRCIQFNLKKMLHHDI----VNNLCYILNKENIKF 578
I T+ SRC + N++ + H + I + + + F
Sbjct: 131 SIISTIRSRCFKINVRSSILHAYNELYSQFIQPIADNKTLDF 172
|
Length = 263 |
| >gnl|CDD|131948 TIGR02902, spore_lonB, ATP-dependent protease LonB | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 9e-05
Identities = 67/271 (24%), Positives = 101/271 (37%), Gaps = 72/271 (26%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISR-ILAKCLNC 439
L+ K RP +F+ +IGQ K+L AL H ++ G GVGKT +R +L +
Sbjct: 55 LSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIY-GPPGVGKTAAARLVLEEAKKN 113
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPI--- 496
+ P + + V+ID D RGI A L +++ PI
Sbjct: 114 ---------PASPFKEGAAFVEIDATT----ARFD---ERGI---ADPLIGSVHDPIYQG 154
Query: 497 ------------------NARYKIYVIDEVHMLTHHAFNAMLKTLE-------------- 524
A + IDE+ L N +LK LE
Sbjct: 155 AGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSE 214
Query: 525 --EPPKYIKFIL------------ATTE-PQKIPITVLSRCIQFNLKKMLHHDIVNNLCY 569
P +I I ATT P++IP + SRC++ + +L +I
Sbjct: 215 NPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKN 274
Query: 570 ILNKENIKFETSALNLIATGAQGSMRDALSL 600
K I E AL LI A + R+A+++
Sbjct: 275 AAEKIGINLEKHALELIVKYAS-NGREAVNI 304
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis [Protein fate, Degradation of proteins, peptides, and glycopeptides, Cellular processes, Sporulation and germination]. Length = 531 |
| >gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 37/118 (31%), Positives = 49/118 (41%), Gaps = 18/118 (15%)
Query: 147 LNKKEKIDYKKVEYLAKKNKPKLI-IAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYA 205
L++ +D K VE L N ++ IAG + Q D E IA Y VD A +
Sbjct: 135 LDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAA-FG 193
Query: 206 GLIA--AGEYPNPVPFADF-------ITSTTHKSLRG----PRGGFILMKKKYKKIIN 250
G + + NP PF DF IT HK G P GG + K Y K ++
Sbjct: 194 GFVIPFLKKGYNPPPF-DFSLPGVQSITIDPHK--MGLSPIPAGGILFRSKSYLKYLS 248
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 29/152 (19%), Positives = 46/152 (30%), Gaps = 46/152 (30%)
Query: 416 YLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDA 475
L G G GKTT+++ +AK L +IE+
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKELG-----------------------------APFIEISG 31
Query: 476 ASTRG--INEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH-----------AFNAMLKT 522
+ + E + L + A + IDE+ L N +L
Sbjct: 32 SELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTE 91
Query: 523 LEE---PPKYIKFILATTEPQKIPITVL-SRC 550
L+ + I AT P K+ +L R
Sbjct: 92 LDGFTSSLSKVIVIAATNRPDKLDPALLRGRF 123
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|223546 COG0470, HolB, ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 41/197 (20%), Positives = 71/197 (36%), Gaps = 21/197 (10%)
Query: 523 LEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSA 582
PPK +FIL T +P KI T+ SRC + K + L I E+
Sbjct: 38 TTAPPKNTRFILITNDPSKILPTIRSRCQRIRFKP------PSRLEAIAWLED-----QG 86
Query: 583 LNLIATGAQGSMRDALS-LTDQAINYSSEKITLNSMQEMLSIIDQKYLIQIL-------- 633
L IA A+G R A++ L A E+ ++ L + L
Sbjct: 87 LEEIAAVAEGDARKAINPLQALAALEIGEESIYEALLLALPESLAQLAALELLKLAENKF 146
Query: 634 -DALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEI 692
+AL + L+L ++ + +LK L+ + ++ + + +
Sbjct: 147 LEALEKLWLLLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQARRRLLDGL 206
Query: 693 IQLSKKFNIEQIQLFYQ 709
+ L + N+ L Q
Sbjct: 207 LALIQLENLLAELLLLQ 223
|
Length = 230 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 161 LAKKNKPKLIIAGASAYS----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP 216
L K PK + S S + +A + +VD A AG + P
Sbjct: 155 LEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHL-----PID 209
Query: 217 VP--FADFITSTTHKSLRGPRG-GFILMKK 243
V DF+ + HK L GP G G + ++K
Sbjct: 210 VQELGCDFLAFSGHKWLLGPTGIGVLYVRK 239
|
Length = 405 |
| >gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 63/311 (20%), Positives = 107/311 (34%), Gaps = 66/311 (21%)
Query: 81 RLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMG-----MSLQEGGHLTHGMMLNM 135
L AEAA + SG AN + ++L GD I S+ +G L
Sbjct: 92 ELADFLGAEAALLFS-SGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRL-------- 142
Query: 136 SGKWFNSICYGLNKKEKIDYKKVEYLAKKN----KPKLIIAGASAYSQY---IDFERFYH 188
S + N D +E L ++ + +I +S
Sbjct: 143 SRAEV--RRFKHN-----DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVE 195
Query: 189 IAKNINSYFMVDMAHYAGLI---------AAGEYPNPVPFADFITSTTHKSLRGPRGGFI 239
+A+ + VD AH G++ G P V D I T K+L G GG+I
Sbjct: 196 LAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEV---DIIVGTLGKAL-GSSGGYI 251
Query: 240 LMKKKYK-KIINSAVFPGIQGGPLMHVI------AAKAVAFKEVLK--PDFKIYQKQVVK 290
+ N A I A A A L+ + ++++ +
Sbjct: 252 AGSAALIDYLRNRA----------RPFIFSTALPPAVAAAALAALRILEEGPERRERLQE 301
Query: 291 NAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDP 350
A +L G+ + ++S II V L +++ + + + L I ++I P
Sbjct: 302 LAAFFRSLLKALGLVL--LPSESPIIPVILGDEERALEASRA-LLEEGIYV--SAI-RPP 355
Query: 351 EKPYFTSGIRL 361
P T+ +R+
Sbjct: 356 TVPKGTARLRI 366
|
Length = 388 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 32/149 (21%), Positives = 50/149 (33%), Gaps = 27/149 (18%)
Query: 413 HHAYLFTGTRGVGKTTISRILAKCLN-----CIGIDGNGGITSQPCGKCSVCVKIDNGCF 467
L G G GKTT++R LA+ L I IDG + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEV-----------LDQLL 50
Query: 468 MDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP 527
+ + AS G + L + + ++DE+ L A+L LEE
Sbjct: 51 LIIVGGKKASGSGELRLRLALALARK----LKPDVLILDEITSLLDAEQEALLLLLEELR 106
Query: 528 KYIKF-------ILATTEPQKIPITVLSR 549
+ ++ TT +K L R
Sbjct: 107 LLLLLKSEKNLTVILTTNDEKDLGPALLR 135
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 383 RKYRPSNFNTLIGQNHISKSL---INALDKKR---LHHAYLFTGTRGVGKTTISRILAKC 436
R RP + IGQ + + L I A KKR L H L G G+GKTT++ I+A
Sbjct: 18 RSLRPKTLDEFIGQEKVKEQLQIFIKA-AKKRGEALDHV-LLFGPPGLGKTTLAHIIANE 75
Query: 437 LNCIGIDGNGGITSQP 452
L N ITS P
Sbjct: 76 LG-----VNLKITSGP 86
|
Length = 332 |
| >gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 505 IDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT------------TEPQKIPITVLSRCIQ 552
IDEVHML F+ + + LE I ILAT P IP+ +L R +
Sbjct: 281 IDEVHMLDIECFSFLNRALESELAPI-VILATNRGICTIRGTDIISPHGIPLDLLDRLLI 339
Query: 553 FNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT-GAQGSMRDALSL 600
+ +I L +E ++ AL+L+A G + S+R A+ L
Sbjct: 340 ITTEPYTREEIKQILEIRAQEEGVEISEEALDLLAKIGEETSLRYAIQL 388
|
This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1342 | |||
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 100.0 | |
| KOG2311|consensus | 679 | 100.0 | ||
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 100.0 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 100.0 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 100.0 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 100.0 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 100.0 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 100.0 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 100.0 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 100.0 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 100.0 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 100.0 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 100.0 | |
| KOG2467|consensus | 477 | 100.0 | ||
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| KOG0989|consensus | 346 | 100.0 | ||
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 100.0 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 100.0 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 100.0 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 100.0 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 100.0 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 100.0 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK05907 | 311 | hypothetical protein; Provisional | 99.98 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 99.98 | |
| PRK07914 | 320 | hypothetical protein; Reviewed | 99.97 | |
| PRK05629 | 318 | hypothetical protein; Validated | 99.97 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 99.97 | |
| KOG0991|consensus | 333 | 99.97 | ||
| PRK07452 | 326 | DNA polymerase III subunit delta; Validated | 99.97 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 99.97 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 99.96 | |
| PRK08487 | 328 | DNA polymerase III subunit delta; Validated | 99.96 | |
| PRK06585 | 343 | holA DNA polymerase III subunit delta; Reviewed | 99.96 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 99.96 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 99.96 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.96 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 99.96 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.95 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.95 | |
| PRK05574 | 340 | holA DNA polymerase III subunit delta; Reviewed | 99.95 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 99.95 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.95 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.95 | |
| TIGR01128 | 302 | holA DNA polymerase III, delta subunit. subunit ar | 99.94 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.94 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 99.94 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 99.93 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.93 | |
| PF13932 | 72 | GIDA_assoc_3: GidA associated domain 3; PDB: 3CES_ | 99.93 | |
| KOG0257|consensus | 420 | 99.93 | ||
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 99.93 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.92 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.92 | |
| COG1466 | 334 | HolA DNA polymerase III, delta subunit [DNA replic | 99.92 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.92 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.91 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 99.91 | |
| KOG1359|consensus | 417 | 99.91 | ||
| KOG1360|consensus | 570 | 99.91 | ||
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.91 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 99.9 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.9 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.9 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.9 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.9 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.9 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 99.89 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.89 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.89 | |
| KOG2035|consensus | 351 | 99.89 | ||
| PRK08960 | 387 | hypothetical protein; Provisional | 99.89 | |
| KOG2028|consensus | 554 | 99.89 | ||
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 99.89 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.89 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.89 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.89 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.89 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.88 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.88 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.88 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.88 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.88 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.88 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.88 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.88 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.88 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.88 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.87 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.87 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.87 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.87 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 99.87 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.87 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.87 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.87 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.87 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.87 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.87 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.86 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.86 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.86 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.86 | |
| PLN02187 | 462 | rooty/superroot1 | 99.86 | |
| KOG0990|consensus | 360 | 99.86 | ||
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.86 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.86 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.86 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.86 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.86 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.86 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.86 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.86 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.86 | |
| PLN02656 | 409 | tyrosine transaminase | 99.86 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.85 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.85 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.85 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.85 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.85 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.85 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.85 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.85 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.85 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.85 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.85 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.84 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.84 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.84 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.84 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.84 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.84 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.84 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.84 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.84 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.84 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.84 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.84 | |
| PRK07324 | 373 | transaminase; Validated | 99.84 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.83 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.83 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.83 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.83 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.83 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.83 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.83 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.83 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.83 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.83 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.83 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.83 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.83 | |
| PLN02651 | 364 | cysteine desulfurase | 99.82 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.82 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.82 | |
| PLN02231 | 534 | alanine transaminase | 99.82 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.82 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.82 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.82 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.82 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.82 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.82 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.82 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.81 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.81 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.81 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.81 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.81 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.8 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.8 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.8 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.8 | |
| KOG0259|consensus | 447 | 99.8 | ||
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.8 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.8 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.8 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.79 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.79 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.79 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.79 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.79 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.79 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.79 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.79 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.78 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.78 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.78 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.78 | |
| PLN02721 | 353 | threonine aldolase | 99.78 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.78 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.78 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.78 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.78 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.78 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.77 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.77 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.77 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.77 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.77 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.77 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.77 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.77 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.77 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.77 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.76 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.76 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.76 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.76 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.75 | |
| PLN02368 | 407 | alanine transaminase | 99.75 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.75 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.75 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.74 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.74 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.74 | |
| KOG1357|consensus | 519 | 99.74 | ||
| PRK06581 | 263 | DNA polymerase III subunit delta'; Validated | 99.74 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.74 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.74 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.74 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.73 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.73 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.72 | |
| KOG2862|consensus | 385 | 99.72 | ||
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.72 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.72 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.72 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.71 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.71 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.71 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.71 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.71 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.71 | |
| PLN02397 | 423 | aspartate transaminase | 99.71 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.7 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.7 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.7 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.7 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.7 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.7 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.69 | |
| KOG1549|consensus | 428 | 99.69 | ||
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.69 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.69 | |
| KOG0256|consensus | 471 | 99.69 | ||
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.68 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.68 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.67 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.67 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.67 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.67 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.67 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 99.66 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.65 | |
| PLN02263 | 470 | serine decarboxylase | 99.65 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.65 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.64 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.64 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.64 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.63 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.63 | |
| KOG1368|consensus | 384 | 99.63 | ||
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.63 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.62 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.62 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.62 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.62 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.62 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.61 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.61 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.61 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.61 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.6 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.6 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.59 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.59 | |
| KOG1969|consensus | 877 | 99.59 | ||
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.59 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.58 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.58 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.58 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.58 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.58 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.58 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.58 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.58 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.58 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.57 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.57 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 99.57 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.57 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.57 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.56 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.56 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.56 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.56 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.56 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.55 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.55 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.55 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.55 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.55 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 99.54 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.53 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.53 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.53 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.53 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.53 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.53 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.53 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.52 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.52 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.52 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.52 | |
| KOG0634|consensus | 472 | 99.51 | ||
| KOG0633|consensus | 375 | 99.51 | ||
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.51 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.5 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.5 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.5 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.5 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.5 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.5 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.49 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.49 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.48 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.48 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.48 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.47 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.47 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.46 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.46 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.46 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.46 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.46 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.46 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.46 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.46 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.46 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.46 | |
| KOG0730|consensus | 693 | 99.46 | ||
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.45 | |
| KOG1358|consensus | 467 | 99.45 | ||
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.45 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.45 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.45 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.44 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 99.44 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.43 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.43 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.43 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.43 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.43 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 99.43 | |
| PRK08485 | 206 | DNA polymerase III subunit delta'; Validated | 99.42 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.42 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.42 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.42 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.41 | |
| PF12169 | 143 | DNA_pol3_gamma3: DNA polymerase III subunits gamma | 99.4 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 99.4 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.4 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.39 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.39 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.39 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 99.39 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.39 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.38 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 99.38 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.37 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.36 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.36 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 99.36 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.36 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 99.36 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 99.36 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.36 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.35 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 99.35 | |
| PF06144 | 172 | DNA_pol3_delta: DNA polymerase III, delta subunit; | 99.35 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.35 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 99.34 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.34 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 99.34 | |
| KOG0734|consensus | 752 | 99.33 | ||
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 99.33 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.32 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 99.32 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.32 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.32 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.32 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 99.31 | |
| KOG0733|consensus | 802 | 99.29 | ||
| KOG1970|consensus | 634 | 99.28 | ||
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.27 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.26 | |
| KOG0742|consensus | 630 | 99.26 | ||
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.26 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 99.26 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.25 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 99.25 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.24 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.24 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.23 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.23 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.23 | |
| KOG0733|consensus | 802 | 99.22 | ||
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.22 | |
| KOG1942|consensus | 456 | 99.22 | ||
| KOG0053|consensus | 409 | 99.22 | ||
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.22 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.22 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 99.21 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.2 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.2 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.19 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.18 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 99.18 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.18 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.18 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.17 | |
| KOG2004|consensus | 906 | 99.16 | ||
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.16 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.16 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.15 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.15 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.15 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.14 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.14 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.14 | |
| KOG0737|consensus | 386 | 99.14 | ||
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.13 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.13 | |
| KOG0731|consensus | 774 | 99.13 | ||
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.13 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.13 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.12 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.12 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.11 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.11 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.11 | |
| PRK14700 | 300 | recombination factor protein RarA; Provisional | 99.11 | |
| KOG0738|consensus | 491 | 99.1 | ||
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.1 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.1 | |
| KOG0739|consensus | 439 | 99.09 | ||
| KOG0743|consensus | 457 | 99.09 | ||
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 99.09 | |
| KOG0727|consensus | 408 | 99.09 | ||
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.08 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.08 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.07 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.07 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.07 | |
| KOG0728|consensus | 404 | 99.06 | ||
| PRK07678 | 451 | aminotransferase; Validated | 99.06 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.06 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.05 |
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-195 Score=1647.34 Aligned_cols=566 Identities=58% Similarity=0.937 Sum_probs=545.5
Q ss_pred hhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCC-
Q psy13354 760 LIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTN- 838 (1342)
Q Consensus 760 ~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~- 838 (1342)
.-+|||||||||||+||+++|+++|||||||+|||||||+||||+||.+|+++|++.|+++|||+|+|++|+||+++++
T Consensus 53 ~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~ 132 (621)
T COG0445 53 GKGHLVREIDALGGLMGKAADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQ 132 (621)
T ss_pred ccceeEEeehhccchHHHhhhhcCCchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCC
Confidence 3479999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHcCCCccccccCCCcccccCccccc
Q psy13354 839 KILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFS 918 (1342)
Q Consensus 839 ~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~~~ 918 (1342)
+|+||+|++|..|.|++|||||||||+|+||||...+++||.|+.+|.+|+.+|+++||+++|||||||||++++||||+
T Consensus 133 ~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I~iG~~~~~aGr~ge~~s~~Ls~~L~~lGf~l~RlKTGTPpRi~~~sIDfs 212 (621)
T COG0445 133 RVVGVVTADGPEFHAKAVVLTTGTFLRGKIHIGDTNYSAGRLGEPPSIGLSDRLRELGFKLGRLKTGTPPRIDARSIDFS 212 (621)
T ss_pred eEEEEEeCCCCeeecCEEEEeecccccceEEeccccccCCCCCCccchHHHHHHHhcCcEEeeeccCCCCccCCCccChh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccCCCCccccccccCCCCCCcccccccCCCCCc
Q psy13354 919 KMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKS 998 (1342)
Q Consensus 919 ~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~k~~~~~~~~~ 998 (1342)
+++.|+|| .++.+|||.+. ..++|+|||+||||++||++|++|+|+||||+|.|+|+||||||||||||+||++|++
T Consensus 213 ~le~q~gD-~~~~~fs~~~~--~~~~Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~ 289 (621)
T COG0445 213 KLEEQPGD-EPPPVFSFTTE--PHPPQIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKER 289 (621)
T ss_pred hhccCcCC-CCCCccccCCC--CCccccceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCcc
Confidence 99999999 89999999882 3457999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeeccccc
Q psy13354 999 HHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQIN 1078 (1342)
Q Consensus 999 ~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~ 1078 (1342)
||+||||||++++++|+||+|||||+++|.+|+|+|||||||.|+|||||||||||+|+||++|||||+|+|||||||||
T Consensus 290 HqIFlEPEGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rpgYAIEYD~v~p~qL~~tLEtK~I~GLf~AGQIN 369 (621)
T COG0445 290 HQIFLEPEGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAGQIN 369 (621)
T ss_pred ceEEecCCCCCCceEecCcccccCCHHHHHHHHHhCcccccceeeccceeeeecccChhhcccchhhceecceEEccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcCCCCccccccchhhhhhhccCccccccchhhh
Q psy13354 1079 GTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIG 1158 (1342)
Q Consensus 1079 g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~~~epyrm~tsr~e~r~~lr~dna~~rl~~~~ 1158 (1342)
||||||||||||++||||||++++|++||+|+|++|||||||||||||||+||||||||||||||+||+||||+||||+|
T Consensus 370 GTtGYEEAAaQGliAGiNAal~~~~~~p~il~R~eaYIGVlIDDLvTkGt~EPYRmfTSRAEyRL~LR~DNAd~RLt~~g 449 (621)
T COG0445 370 GTTGYEEAAAQGLIAGINAALKVQGKEPFILRRDEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNADLRLTEIG 449 (621)
T ss_pred CCchhHHHHhhhHHHHHHHHHHhcCCCCcccccCcceeeeEehhhhcCCCCCchhhcchHHHHHHHhhccchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccCcccccccCHHhhhcCCCCChhhHhcccccCCC
Q psy13354 1159 WKLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGK 1238 (1342)
Q Consensus 1159 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 1238 (1342)
|++|||+++||++|++|++.+++++++|++++++|++|.. .+......++....+++|+|+||+++|++|.+++|....
T Consensus 450 ~~lGLv~~~r~~~f~~k~~~i~~~~~~L~~~~v~p~~~~~-~~~~~~~~~~~~~~~~~~lL~rpe~~~~~l~~~~~~~~~ 528 (621)
T COG0445 450 RELGLVDDERYERFLKKKENIEEEIERLKSTWVTPSEVAK-ELLALGGQPLKRRSSLYDLLRRPEISYDDLISLFPLPAD 528 (621)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHheecChHHHHH-HHHHhhcCCcccchhHHHHhcCCCCCHHHHHHhCCcccc
Confidence 9999999999999999999999999999999999965544 333333345667789999999999999999999884333
Q ss_pred CCcccccCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHhhhcCCC
Q psy13354 1239 NLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISG 1318 (1342)
Q Consensus 1239 ~~~~~~~~~~~~~~~~~~~~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~a~ri~G 1318 (1342)
+++++.++|||++||+|||+||+++|++++++|+++||+||||++|+|||+|+||||+++||.||||||||+|
T Consensus 529 -------~~~~v~eqveieiKY~gYI~rq~~~i~~~~~~e~~~IP~~~Dy~~i~~LS~Ea~~KL~~~rP~tigqAsRIsG 601 (621)
T COG0445 529 -------LDAEVLEQVEIEIKYEGYIKRQQEQIEKLKRLENTKIPEDIDYDKIPGLSNEAREKLNKIRPLTIGQASRISG 601 (621)
T ss_pred -------cCHHHHhHhheehhHHHHHHHHHHHHHHHHHhhcccCCCCcChhhccchhHHHHHHHhhcCCCcHHHhhhcCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcccc
Q psy13354 1319 VTPAALTLLLIYLKSGFL 1336 (1342)
Q Consensus 1319 v~p~~i~~l~~~~~~~~~ 1336 (1342)
||||||+.|++||+++..
T Consensus 602 itpadI~~Ll~~l~~~~~ 619 (621)
T COG0445 602 VTPADISILLVYLKKGKN 619 (621)
T ss_pred CCHHHHHHHHHHHhhhcc
Confidence 999999999999997654
|
|
| >KOG2311|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-177 Score=1458.46 Aligned_cols=569 Identities=44% Similarity=0.749 Sum_probs=540.7
Q ss_pred hhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCCe--
Q psy13354 762 HAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNK-- 839 (1342)
Q Consensus 762 ~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~-- 839 (1342)
+||+||||||||+|+++||.|||||||||+||||||||||||+||++|++.||+.|.++||++|.+++|+||+++++.
T Consensus 79 g~LmrEVDALdGl~~rvcD~s~vq~k~LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~ 158 (679)
T KOG2311|consen 79 GHLMREVDALDGLCSRVCDQSGVQYKVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDG 158 (679)
T ss_pred ceeeeeehhhcchHhhhhhhhhhhHHHhhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ---EEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHcCCCccccccCCCcccccCccc
Q psy13354 840 ---ILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTID 916 (1342)
Q Consensus 840 ---~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~ 916 (1342)
|.||++.||..++|++|||||||||+|+||||+...++||.|+.+|.+|+++|.++||.++|||||||||+.++|||
T Consensus 159 ~~~~~gV~l~dgt~v~a~~VilTTGTFL~~~I~iGlk~~pAGRiGe~ps~~Lse~l~klGF~~gRLKTGTPpRlak~sIn 238 (679)
T KOG2311|consen 159 HCVVSGVVLVDGTVVYAESVILTTGTFLRGQINIGLKTHPAGRIGEQPSIGLSETLQKLGFELGRLKTGTPPRLAKESIN 238 (679)
T ss_pred ceEEEEEEEecCcEeccceEEEeeccceeeEEeeccccccCccccCCcchHHHHHHHHhCeeeccccCCCCcccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeecCCCCCCCcccccCCCCCC--CCccccchhhcchhHHHHHHhhcccCCCCccccccccCCCCCCcccccccCC
Q psy13354 917 FSKMEEQIGDFDPVPVFSVLGNINLH--PKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFP 994 (1342)
Q Consensus 917 ~~~~~~~~~d~~~~~~f~~~~~~~~~--~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~k~~~~~ 994 (1342)
||+++.|.|| .++.+|||.++.+.. .+|++||+||||+.+|+|+++|||.+|++.+.. +|||||||||+|++||+
T Consensus 239 fS~le~q~gD-~~p~pfSFln~~v~i~~e~ql~cYlt~Tt~~~h~ivr~NLh~~~hv~~~~--~gPRYCPSiEsKilRFp 315 (679)
T KOG2311|consen 239 FSKLERQIGD-EPPIPFSFLNETVWIEPEDQLPCYLTHTTPRVHEIVRKNLHENPHVKETT--IGPRYCPSIESKILRFP 315 (679)
T ss_pred hHHhhhhcCC-CCCCceeccCCccccChhccCccccccCcHHHHHHHHhhhccCccccccc--cCCccCCcHHHHHhcCc
Confidence 9999999999 999999999987543 368999999999999999999999999998655 59999999999999999
Q ss_pred CCCccceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeec
Q psy13354 995 KKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFA 1074 (1342)
Q Consensus 995 ~~~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~a 1074 (1342)
+| .|++||||||++.+.|||||+|++||+++|.+|+|+|||||||.|.+|||.|+||||||+||++|||||+|+|||||
T Consensus 316 ~k-~HqiwLEpEGlDs~~iYpqG~S~tlpee~Q~~lir~IpGLEn~~i~qP~YgVeYDyv~prQlk~sLeTkkV~GLF~A 394 (679)
T KOG2311|consen 316 DK-SHQIWLEPEGLDSDLIYPQGLSNTLPEELQLQLIRSIPGLENAEILQPGYGVEYDYVDPRQLKPSLETKKVQGLFFA 394 (679)
T ss_pred cc-cceeeecCcCCCCCcccccccccCCCHHHHHHHHHhccCcccceeecccccceecccChHHcchhhhhhhccceEEe
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcCCCCccccccchhhhhhhccCccccccc
Q psy13354 1075 GQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRL 1154 (1342)
Q Consensus 1075 Gqi~g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~~~epyrm~tsr~e~r~~lr~dna~~rl 1154 (1342)
||||||||||||||||++|||||++.++|++|++++|+|||||||||||||+||+||||||||||||||+||+||||.||
T Consensus 395 GQINGTTGYEEAAAQGIiAGiNA~~~a~~~~~~~v~Rte~yIGvLIDDL~t~g~~EPYRMfTSRsEfRLslR~DNAD~RL 474 (679)
T KOG2311|consen 395 GQINGTTGYEEAAAQGIIAGINASLRASGKPPVVVSRTEGYIGVLIDDLTTLGTNEPYRMFTSRSEFRLSLRPDNADSRL 474 (679)
T ss_pred eeecCccchHHHHhhhhHhhhhhhhhhcCCCCeeeecccceeEEEehhhhccCCccchhhhcchhhheeeecCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhH-hhCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccCc-ccccccCHHhhhcCCCCChhhHhcc
Q psy13354 1155 TEIGW-KLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGK-RIKHEYSLSNLLTWPNVNYNTLTSL 1232 (1342)
Q Consensus 1155 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~l~~~ 1232 (1342)
||+|| +.|||++.||+.|++++..+++.+++|+++++++.+|.. .++.+..+ ..+....++|+|++.++++++|...
T Consensus 475 T~lg~~~~~l~s~~rw~~fq~~k~~l~~~~~~lk~~k~s~~~w~~-l~~ia~~s~~~~k~~~a~d~l~~~~~d~~~L~~~ 553 (679)
T KOG2311|consen 475 TPLGYKEGGLVSQQRWERFQETKSRLDEGIKRLKEFKLSSQKWKK-LIPIASISTSRSKPVRALDLLKFKDLDLDKLIEC 553 (679)
T ss_pred ccchhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-hccccccccccccchhhhhhhccccccHHHHHHh
Confidence 99999 789999999999999999999999999999999999976 33333321 1123446999999999999999999
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHh
Q psy13354 1233 KGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQ 1312 (1342)
Q Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~ 1312 (1342)
.|+..+ +..++.+++++++||+||++||.||+++++.++++|++.||+|+||.++++||.|+||||+++||+||||
T Consensus 554 ~p~~~~----~~~~~r~~~erl~Ie~kYe~~i~rq~q~~q~~~~de~~~lP~D~Dy~tm~~lS~E~rekL~~vrP~TIg~ 629 (679)
T KOG2311|consen 554 HPDPLK----NLTIPRELAERLKIEGKYESFIVRQQQEKQGVQRDEALQLPDDLDYLTMRTLSLECREKLHRVRPQTIGA 629 (679)
T ss_pred ccchhh----cccchHHHHhheeeeeeehhHHHHHHHHHHHHhHHhhhcCCcccccccccccCHHHHHHhhhcCchhhhh
Confidence 886222 1236799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHhccccccc
Q psy13354 1313 ASRISGVTPAALTLLLIYLKSGFLKNF 1339 (1342)
Q Consensus 1313 a~ri~Gv~p~~i~~l~~~~~~~~~~~~ 1339 (1342)
|+||+||||++|..|+.|+++.+.++.
T Consensus 630 asRI~GvtpaaI~~Llr~v~~~~~~~s 656 (679)
T KOG2311|consen 630 ASRIQGVTPAAIIRLLRHVKTNQRRQS 656 (679)
T ss_pred hhhcCCCCHHHHHHHHHHhhcchhhhh
Confidence 999999999999999999998665554
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-163 Score=1466.04 Aligned_cols=564 Identities=59% Similarity=0.932 Sum_probs=544.6
Q ss_pred chhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCC
Q psy13354 759 NLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTN 838 (1342)
Q Consensus 759 ~~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~ 838 (1342)
...+++++|||++||.|+.++|.+++||++||++||||||++|+|+||..|++.|++.+++++|+++++++|++++.+++
T Consensus 52 ~akg~lvrEidalGg~~g~~~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~g 131 (618)
T PRK05192 52 IAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENG 131 (618)
T ss_pred chhhHHHHHHHhcCCHHHHHHhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHcCCCccccccCCCcccccCccccc
Q psy13354 839 KILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFS 918 (1342)
Q Consensus 839 ~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~~~ 918 (1342)
+|.||++.+|..+.|+.||+||||||+|.||||...+++||+|+.+|.+|+.+|+++|+++.||||||||||+++||||+
T Consensus 132 rV~GV~t~dG~~I~Ak~VIlATGTFL~g~i~iG~~~~~~Gr~g~~~a~~L~~~l~~~g~~~~r~ktgtppri~~~sid~~ 211 (618)
T PRK05192 132 RVVGVVTQDGLEFRAKAVVLTTGTFLRGKIHIGEKNYSGGRAGEPPSIGLSESLRELGFELGRLKTGTPPRIDGRSIDFS 211 (618)
T ss_pred EEEEEEECCCCEEECCEEEEeeCcchhcCeEecccccCCCcCccccHHHHHHHHHhcCCccceecCCCCceecCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccCCCCccccccccCCCCCCcccccccCCCCCc
Q psy13354 919 KMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKS 998 (1342)
Q Consensus 919 ~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~k~~~~~~~~~ 998 (1342)
+++.|+|| ..+.+|||++.. ...+|++||+|+||++||++|+.|+|.+|+|+|.|+++|||||||||||++||+++++
T Consensus 212 ~~~~q~~~-~~~~~fs~~~~~-~~~~~~~c~~t~t~~~t~~ii~~~~~~s~~~~g~i~~~gpRYCpsiE~k~~rf~~~~~ 289 (618)
T PRK05192 212 KLEEQPGD-DPPPPFSFMTEK-IHPPQVPCYITYTNEETHEIIRENLHRSPMYSGVIEGVGPRYCPSIEDKIVRFADKDR 289 (618)
T ss_pred hCceecCC-CCCCCCCCCCCC-CCcCeeeCCCCcCcHHHHHHHHhhcccccCcCcccCCCCCCCCCCHHHHhhhcCCCCC
Confidence 99999999 999999998664 3357999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeeccccc
Q psy13354 999 HHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQIN 1078 (1342)
Q Consensus 999 ~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~ 1078 (1342)
||+|||||+++++++|+||+|||||+++|.+|+|+|||||||+|+||||+||||||||+||++|||||.++|||||||||
T Consensus 290 h~v~lepeg~~~~~~y~~G~stslp~~~Q~~~~r~ipGle~a~i~r~gy~ieyd~i~p~~L~~~Le~k~~~~lf~AGQin 369 (618)
T PRK05192 290 HQIFLEPEGLDTNEVYPNGISTSLPEDVQLEMLRSIPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAGQIN 369 (618)
T ss_pred ceEEEecCCCCCCEEeccCccCCCCHHHHHHHHhcCcCccceeEeecccceeecccChhhcchhheecCCCCeEECcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcCCCCccccccchhhhhhhccCccccccchhhh
Q psy13354 1079 GTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIG 1158 (1342)
Q Consensus 1079 g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~~~epyrm~tsr~e~r~~lr~dna~~rl~~~~ 1158 (1342)
||+|||||||||++||+|||++++ ++||+|+|++|||||||||||||||+||||||||||||||+||+||||+|||++|
T Consensus 370 Gt~GYeEaaaqGl~AgiNaa~~~~-~~~~~~~r~~~yiGvliddlvtkg~~EPYRmfTSRaEyRl~lR~DNad~RLt~~g 448 (618)
T PRK05192 370 GTTGYEEAAAQGLIAGINAALKVQ-GEPFILKRSEAYIGVLIDDLVTKGTKEPYRMFTSRAEYRLLLREDNADLRLTEKG 448 (618)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcchhhHHHHHHHHHhcCCCcchhhcchhhHHHHHhccccHHhHhHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccCcccccccCHHhhhcCCCCChhhHhcccccCCC
Q psy13354 1159 WKLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGK 1238 (1342)
Q Consensus 1159 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 1238 (1342)
|++|||+++||+.|++|++.+++++++|++++++|.+|... +..++...+|++++|+||++++++|.+++|....
T Consensus 449 ~~~gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~p~~~~~~l~~~~~~~~~ 523 (618)
T PRK05192 449 YELGLVDDERWARFEEKKEAIEEEIERLKSTRVTPDELNEL-----GGDPLKREVSLLDLLRRPEITYEDLAKLDPELAD 523 (618)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHhh-----cCCcccCCCcHHHHhCCCCCCHHHHHhhcccccc
Confidence 99999999999999999999999999999999999777653 2234566789999999999999999998876554
Q ss_pred CCcccccCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHhhhcCCC
Q psy13354 1239 NLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISG 1318 (1342)
Q Consensus 1239 ~~~~~~~~~~~~~~~~~~~~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~a~ri~G 1318 (1342)
+++++.++++|++||+|||+||+++|++++++|+++||+||||++|+|||+|+||||+++||.||||||||||
T Consensus 524 -------~~~~~~~~~~i~~kY~gyi~rq~~~~~~~~~~e~~~ip~~~dy~~i~~ls~E~~~kL~~~~P~t~gqA~ri~G 596 (618)
T PRK05192 524 -------LDPEVAEQVEIEIKYEGYIERQQEEIEKLKRLENKKIPEDIDYDAISGLSNEAREKLNKIRPETIGQASRISG 596 (618)
T ss_pred -------CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCcCCCCcccccchHHHHHHHHHhcCCCCHHHHHhcCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccccc
Q psy13354 1319 VTPAALTLLLIYLKSGFLK 1337 (1342)
Q Consensus 1319 v~p~~i~~l~~~~~~~~~~ 1337 (1342)
||||||+.|++||+++...
T Consensus 597 vtpa~i~~l~~~l~~~~~~ 615 (618)
T PRK05192 597 VTPADISILLVYLKKRGRL 615 (618)
T ss_pred CCHHHHHHHHHHHhhhccc
Confidence 9999999999999876543
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-158 Score=1422.02 Aligned_cols=568 Identities=58% Similarity=0.927 Sum_probs=543.7
Q ss_pred chhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEe-C
Q psy13354 759 NLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIK-T 837 (1342)
Q Consensus 759 ~~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~-~ 837 (1342)
..-+++++|||+|||.|+.++|.++||||+||.|||||||++|+|+||..|++.|++.++++||+++++++|++++.+ +
T Consensus 48 ~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~ 127 (617)
T TIGR00136 48 PAKGILVKEIDALGGLMGKAADKAGLQFRVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDN 127 (617)
T ss_pred cccchhhhhhhcccchHHHHHHhhceeheecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecC
Confidence 455689999999999999999999999999999999999999999999999999999999999999999999999987 7
Q ss_pred CeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHcCCCccccccCCCcccccCcccc
Q psy13354 838 NKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDF 917 (1342)
Q Consensus 838 ~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~~ 917 (1342)
+++.||.+.+|..+.|+.||+||||||+|+||||..++++||.|+.+|.+|+++|+++|+++.||||||||||+++||||
T Consensus 128 g~V~GV~t~~G~~I~Ad~VILATGtfL~g~ihig~~~~~~Gr~~~~~a~~l~~~l~~~g~~~~r~ktgtppri~~~sid~ 207 (617)
T TIGR00136 128 DEIKGVVTQDGLKFRAKAVIITTGTFLRGKIHIGDKSYSAGRAGEQPSIGLSTTLRELGFKVGRLKTGTPPRIDKRSIDF 207 (617)
T ss_pred CcEEEEEECCCCEEECCEEEEccCcccCCCEEecccccCCCCCcchhhHHHHHHHHhcCCcccccCCCCCceecCCccCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccCCCCccccccccCCCCCCcccccccCCCCC
Q psy13354 918 SKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKK 997 (1342)
Q Consensus 918 ~~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~k~~~~~~~~ 997 (1342)
++++.|+|| ..+.+|||++......+|++||+|+||.+||++|+.|+|.+|+|+|.|+++|||||||||+|++||+++.
T Consensus 208 ~~~~~q~gd-~~~~~fs~~~~~~~~~~~~~C~~t~t~~~~h~ii~~~~~~s~~~~g~i~~~GpRYCpsIe~k~~~f~~~~ 286 (617)
T TIGR00136 208 SKLEVQHGD-NPPPAFSFMNKNFLPLQQLPCYLTHTNPKTHDLIRSNLHRSPMYSGVIEGNGPRYCPSIEDKVVRFADKE 286 (617)
T ss_pred HhcccccCC-CCCCCCCCCCCCCCCCCcccCCcccCcHHHHHHHHhccccccccCcccCCCCCCCCCCHHHHHhhcCCCC
Confidence 999999999 9999999987543334799999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeecccc
Q psy13354 998 SHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQI 1077 (1342)
Q Consensus 998 ~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi 1077 (1342)
.|++|||||++++.++|++|+||+||+++|.+++++|||||||+|+||||+||||||||++|++|||||.++||||||||
T Consensus 287 ~h~v~lepe~~~~~~~~~~G~st~lp~~~q~~i~~~ipGle~a~~~r~gy~~e~~~i~p~~l~~~le~k~~~gLf~AGqi 366 (617)
T TIGR00136 287 RHQIFLEPEGLNSDEIYPNGLSTSLPEDVQLQIVRSIPGLENAEILRPGYAIEYDFFDPRQLKPTLETKLIQGLFFAGQI 366 (617)
T ss_pred CceEEEeecCCCCCeEEecCeecCCCHHHHHHHHHcCcCcccceEeccccceEEeEEChhhCchhheeCCCCCeEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcCCCCccccccchhhhhhhccCccccccchhh
Q psy13354 1078 NGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEI 1157 (1342)
Q Consensus 1078 ~g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~~~epyrm~tsr~e~r~~lr~dna~~rl~~~ 1157 (1342)
|||+||+||||||++||+|||++++|++||+|+|++|||||||||||||||+||||||||||||||+||+||||+|||++
T Consensus 367 ~Gt~Gy~eAaa~Gl~Ag~naa~~~~~~~~~~l~r~~~yiGvliddlvtkg~~EPYRmfTSRaE~Rl~lR~dNAd~RL~~~ 446 (617)
T TIGR00136 367 NGTTGYEEAAAQGLMAGINAALKLQNKEPFILKRSEAYIGVLIDDLVTKGTKEPYRMFTSRAEYRLLLREDNADFRLTEI 446 (617)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccchHhHHHHHHHhcCCCcchhhccchhHHHHHhccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccCcccccccCHHhhhcCCCCChhhHhcccccCC
Q psy13354 1158 GWKLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGING 1237 (1342)
Q Consensus 1158 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 1237 (1342)
||++|||+++||+.|++|++.+++++++|++++++|.+.....+...+..++...+|++++|+||++++++|.+++|...
T Consensus 447 g~~~gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~rp~~~~~~l~~~~~~~~ 526 (617)
T TIGR00136 447 GRELGLIDDERYARFLKKKENIEEEIQRLKSTWLTPSKEVKEELKNHLQSPLKREASGEDLLRRPEMNLEKLTKLTPFLP 526 (617)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCccHHHHHHHHhhcCCCCCCCccHHHHhCCCCCCHHHHHhhcCCcc
Confidence 99999999999999999999999999999999999965322234333344556788999999999999999999877543
Q ss_pred CCCcccccCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHhhhcCC
Q psy13354 1238 KNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRIS 1317 (1342)
Q Consensus 1238 ~~~~~~~~~~~~~~~~~~~~~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~a~ri~ 1317 (1342)
. +++++.+++|||+||+|||+||+++|++++++|+++||+||||++|+|||+|+||||+++||.|||||||||
T Consensus 527 ~-------~~~~~~~~~~i~~kY~~yi~rq~~~~~~~~~~e~~~ip~~~dy~~i~~ls~E~~ekL~~~rP~tlgqA~ri~ 599 (617)
T TIGR00136 527 A-------LDEEVLEQVEIQIKYEGYIKKQQDEIKKLDRLENVKIPATFDYRKVPGLSTEAREKLSKFRPLSIGQASRIS 599 (617)
T ss_pred c-------CCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCcCCCCcccccchhHHHHHHHhhcCCCCHHHHhcCC
Confidence 3 688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcc
Q psy13354 1318 GVTPAALTLLLIYLKSG 1334 (1342)
Q Consensus 1318 Gv~p~~i~~l~~~~~~~ 1334 (1342)
|||||||+.|++||+++
T Consensus 600 Gvtpa~i~~l~~~l~k~ 616 (617)
T TIGR00136 600 GITPADISILLVYLKKQ 616 (617)
T ss_pred CCCHHHHHHHHHHhccC
Confidence 99999999999999875
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-95 Score=835.88 Aligned_cols=344 Identities=55% Similarity=0.886 Sum_probs=313.5
Q ss_pred hhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCCe
Q psy13354 760 LIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNK 839 (1342)
Q Consensus 760 ~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~ 839 (1342)
.-++|++|||||||.|++++|+++|||||||+|||||||++|+|+||..|+++|++.|+++|||+|++++|++|++++++
T Consensus 48 ~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~ 127 (392)
T PF01134_consen 48 AKGHLVREIDALGGLMGRAADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGK 127 (392)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTE
T ss_pred cccchhHHHhhhhhHHHHHHhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCe
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHcCCCccccccCCCcccccCcccccc
Q psy13354 840 ILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSK 919 (1342)
Q Consensus 840 ~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~~~~ 919 (1342)
|+||+|.+|.+|.|++|||||||||+|.+|||...+++||.|+.+|.+|+++|+++|+++.|||||||||++++||||++
T Consensus 128 v~GV~~~~g~~~~a~~vVlaTGtfl~G~~~iG~~~~~~Gr~ge~~s~~l~~~L~~~g~~~~r~ktgtpprv~~~SId~~~ 207 (392)
T PF01134_consen 128 VKGVVTKDGEEIEADAVVLATGTFLNGCIHIGERCPPGGRRGELTSDGLSESLRKLGFELGRFKTGTPPRVDKDSIDFSK 207 (392)
T ss_dssp EEEEEETTSEEEEECEEEE-TTTGBTSEEEETTEEEECSCTTCC-BCHHHHHHHHTTGGEEEEEEEE--EEEGGGS-CTC
T ss_pred EEEEEeCCCCEEecCEEEEecccccCceeeeeecccccCCCccccchHHHHHHHhhCCceEEEecCCCceeccCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccCC-CCccccccccCCCCCCcccccccCCCCCc
Q psy13354 920 MEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSP-IFSGKIESIGPRYCPSIEDKVYRFPKKKS 998 (1342)
Q Consensus 920 ~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~p-~~~~~~~~~g~r~~~s~~~k~~~~~~~~~ 998 (1342)
++.|+|| ..+.+|||.++.. ..+|++||+|+|++.+|.++++|+|.+| +|+|.|+++|||||||||+|+++|+++++
T Consensus 208 ~~~q~gd-~~~~~fs~~~~~~-~~~q~~~~~t~t~~~~~~~i~~~~~~s~~~~~g~ie~~gpRycpsie~K~v~f~~~~~ 285 (392)
T PF01134_consen 208 LEEQPGD-DKPIPFSYLNCPM-NKEQYPCFITYTNEATHEIIRDNLHRSPDLFEGCIEGIGPRYCPSIEDKPVRFPDRPY 285 (392)
T ss_dssp SEEEE-T-SSTC-SSSSCCST-SHHHHHEEEEEHHHHHHHHHHHTCCG-T-T-TT-CHHCHCCCTTCHHHHHTTSTSTSS
T ss_pred HHhhhcc-CCCCCccccCCcc-cHHHHHHHHHHhhHHHHHHHHhccccCcceecceeEEeccCCccchhcccccccCCCC
Confidence 9999999 9999999998854 4579999999999999999999999999 99999999999999999999999999999
Q ss_pred cceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeeccccc
Q psy13354 999 HHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQIN 1078 (1342)
Q Consensus 999 ~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~ 1078 (1342)
|++|||||+++++++|+||+||+||+++|++++|+|||||||+|+||||+||||||||.+|.+|||+|.++|||||||||
T Consensus 286 h~v~Lepe~~~~~~~y~~G~stslp~~~Q~~~~r~IpGLe~a~~~r~Gy~~ey~~v~~~~l~~~l~~k~~~~lf~AGqi~ 365 (392)
T PF01134_consen 286 HQVFLEPEGLNTNEYYPNGFSTSLPWDVQKRIFRSIPGLENAEILRPGYAHEYDFVDPPQLLNTLETKKIPGLFFAGQIN 365 (392)
T ss_dssp EEEEEEESSTTS-EEEEETS-CSS-HHHHHHHHTTSTTTTT--EEE--EEEEEEEE-GGGBBTTSBBSSSBTEEE-GGGG
T ss_pred EEEEEEecCCCCceEEecCCcCCCCHHHHHHHhhcCCChhcChhhheEEeeeeeEEehhhcccceEECCCCCceECCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhCCCC
Q psy13354 1079 GTTGYEEAASQGLLAGLNAALFSQDRD 1105 (1342)
Q Consensus 1079 g~~gy~eA~~~G~~Ag~na~~~~~~~~ 1105 (1342)
||+||+||+|||++||+|||++++|+|
T Consensus 366 G~~Gy~eaaa~G~~ag~na~~~~~g~e 392 (392)
T PF01134_consen 366 GTEGYEEAAAQGLIAGINAARRLQGKE 392 (392)
T ss_dssp TB-SHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999986
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=607.85 Aligned_cols=298 Identities=24% Similarity=0.358 Sum_probs=274.8
Q ss_pred chhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCC
Q psy13354 759 NLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTN 838 (1342)
Q Consensus 759 ~~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~ 838 (1342)
+..+.+++||+++|+.|...+|.++| ||++++ |+||.+|++.|++.|+++||+++++.+|++|..
T Consensus 61 ~a~Gil~~ei~~lg~l~~~~ad~~~I----------pagg~~--~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~--- 125 (433)
T TIGR00137 61 RAAGLLKTEMRQLSSLIITAADRHAV----------PAGGAL--AVDRGIFSRSLTEQVASHPNVTLIREEVTEIPE--- 125 (433)
T ss_pred hccCcHHHHHhhcCeeeeehhhhhCC----------CCCceE--EehHHHHHHHHHHHHHhCCCcEEEeeeeEEEcc---
Confidence 45577899999999999999999999 899877 999999999999999999999999999988851
Q ss_pred eEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHH-cCCCccccccCCCcccccCcccc
Q psy13354 839 KILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKE-LQLSHGRLKTGTPPRIDKRTIDF 917 (1342)
Q Consensus 839 ~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~-~g~~~~~~~~~~~~r~~~~si~~ 917 (1342)
.|.||||||| .++..|+++|++ .|+...+++|||||||+++||||
T Consensus 126 --------------~d~VViATG~--------------------~~s~~La~~L~~~~g~~~~~~~da~~p~i~~~sId~ 171 (433)
T TIGR00137 126 --------------EGITVIATGP--------------------LTSPALSEDLKELTGMDYLYFYDAAAPIVEGDSIDK 171 (433)
T ss_pred --------------CCeEEEeCCC--------------------CccHHHHHHHHHhhCCceEEEecCcCcEEecCCCCc
Confidence 2589999994 678899999999 59999999999999999999999
Q ss_pred ccceeecCCCCCCCcccccCCCCCCCCccccchhhcch--------hHHHHHHhhcccCCCCccccccccCCCCCCccc-
Q psy13354 918 SKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNE--------KTHNIIRSEFKNSPIFSGKIESIGPRYCPSIED- 988 (1342)
Q Consensus 918 ~~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~--------~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~- 988 (1342)
+++....-. ++ ...+|++||+|+++. ++|+++..|+|.+|+|+| |||||+
T Consensus 172 ~~~~~~~r~----------~~--~~~~yl~cplt~~e~~~f~~~l~~~~~~~~~~~~~~~~~~g---------C~~iE~~ 230 (433)
T TIGR00137 172 EKAFFASRY----------DK--GEAAYLNCPFTEEEYFNFWEALCEAEQVPLKDFEKAKFFEG---------CLPIEEM 230 (433)
T ss_pred ceEEeeccC----------CC--CCcceeeCCcCcccHHHHHHHHHHHhhhhhhccccCcccCC---------CCCHHHH
Confidence 998743211 01 113489999999987 779999999999999986 999999
Q ss_pred -----ccccCCC-C------------CccceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEE
Q psy13354 989 -----KVYRFPK-K------------KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIE 1050 (1342)
Q Consensus 989 -----k~~~~~~-~------------~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~ 1050 (1342)
|++||++ | ++|++|||||+++++++|++|+||+||+++|++++|+|||||||+|+||||+|+
T Consensus 231 a~~g~k~~rf~~~kp~gl~~p~~~~~~~~~v~l~~e~~~~~~~~~~G~~t~l~~~~Q~~~~r~ipgle~a~~~r~g~~~~ 310 (433)
T TIGR00137 231 AQRGEKTMLFGPMKPVGLFDPRTGKKPYAVVQLRQEDKAGTLWNMVGFQTNLRWGEQKRVFRLIPGLENAEFVRMGVMHR 310 (433)
T ss_pred hhcCCceEecCCCCccCCCCCCCCCCCceEEEEeccccCCCEEecccccCCCCHHHHHHHHhcCcCccceEEeecceEEe
Confidence 9999998 6 799999999999999999999999999999999999999999999999999999
Q ss_pred eeeeC-ccCccccccccCcCCeeecccccCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcC
Q psy13354 1051 YDYFN-PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKG 1127 (1342)
Q Consensus 1051 ~~~i~-p~~l~~tlesk~~~gL~~aGqi~g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~ 1127 (1342)
||||| |++|++|||+|.++|||||||||||+|||||||||++||+|||++++|++|++++ +++|||||||||+|+.
T Consensus 311 ~~~i~~p~~L~~~l~~k~~~~lf~AGQi~G~~GY~Eaaa~Gl~agina~~~~~~~~~~~~~-~~~~iG~l~~~l~~~~ 387 (433)
T TIGR00137 311 NTFINSPQLLTASLHFKDRQTLFFAGQLTGVEGYVASTAGGWLAGINAARLALGEPLLTLP-AETMMGALFNYISTAS 387 (433)
T ss_pred eeeeCCHHHhhHHhccCCCCCEEECcccccchHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CcchHHHHHHHHhcCC
Confidence 99999 5999999999999999999999999999999999999999999999999999999 8999999999999974
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-62 Score=566.23 Aligned_cols=294 Identities=28% Similarity=0.406 Sum_probs=274.8
Q ss_pred chhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCC
Q psy13354 759 NLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTN 838 (1342)
Q Consensus 759 ~~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~ 838 (1342)
+..+.+.+|++++|+.+..++|.+++ ||++++ |+||..|++.+++.|+++||+++++++|++|. +
T Consensus 63 ~a~Gll~~em~~lgsl~~~aad~~~v----------PA~gaL--vvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l~--~- 127 (436)
T PRK05335 63 NAVGLLKEEMRRLGSLIMEAADAHRV----------PAGGAL--AVDREGFSEYVTEALENHPLITVIREEVTEIP--E- 127 (436)
T ss_pred hcCCchHHHHHHhcchheecccccCC----------CCccce--ecCHHHHHHHHHHHHHcCCCcEEEccchhccc--c-
Confidence 45567889999999999999999988 999988 99999999999999999999999988999985 1
Q ss_pred eEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHc-CCCccccccCCCcccccCcccc
Q psy13354 839 KILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKEL-QLSHGRLKTGTPPRIDKRTIDF 917 (1342)
Q Consensus 839 ~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~-g~~~~~~~~~~~~r~~~~si~~ 917 (1342)
| .||||||| .+|.+|+++|+++ |++..+|||||||||+++||||
T Consensus 128 ---------~------~viiatG~--------------------~~s~~l~~~l~~~~g~~~~~f~~~~~p~v~~~sid~ 172 (436)
T PRK05335 128 ---------D------ITIIATGP--------------------LTSDALAEAIKALTGEDYLYFFDAAAPIVDKDSIDM 172 (436)
T ss_pred ---------C------CEEEeCCC--------------------CchHHHHHHHHHhcCCccceecCCCCceecCCccCH
Confidence 1 89999994 6899999999997 9999999999999999999999
Q ss_pred ccceeecCCCCCCCcccccCCCCCCCCccccchhh----------cchhHHHHHHhhcccCCCCccccccccCCCCCCcc
Q psy13354 918 SKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITH----------TNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIE 987 (1342)
Q Consensus 918 ~~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~----------~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~ 987 (1342)
++++.|.+| .... .++++||+|+ ++.+ +++..+++.+|+|+| |||||
T Consensus 173 ~~~~~~~~~-~~~~-----------~~~~~C~~~~~~y~~f~~~l~~~~--~~~~~~~~~~~~f~g---------C~~iE 229 (436)
T PRK05335 173 DKVYLASRY-DKGE-----------ADYLNCPMTKEEYEAFYEALIAAE--KAELKDFEKEKYFEG---------CMPIE 229 (436)
T ss_pred HHceeccCC-CCCC-----------ccceeCCCChHHHhhhHHhhcCHh--HhhhcccccCcccCC---------CCCHH
Confidence 999999999 5422 3589999999 4433 679999999999986 99999
Q ss_pred cccccCCCCCcc-------------------ceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeE
Q psy13354 988 DKVYRFPKKKSH-------------------HIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYA 1048 (1342)
Q Consensus 988 ~k~~~~~~~~~~-------------------~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~ 1048 (1342)
+|+.||.++.+| ++|||||+++++++|++||||+||+++|++++|+|||||+|+|+||||+
T Consensus 230 ~~a~r~~~~~~~gp~kpvgl~~p~~~~~~~a~v~L~~e~~~~~~~~~~Gfqt~l~~~~Q~~~~r~Ipgle~a~~~r~G~~ 309 (436)
T PRK05335 230 VMAERGRETLRFGPMKPVGLTDPRTGKRPYAVVQLRQDNAAGTLYNIVGFQTKLKWGEQKRVFRMIPGLENAEFVRYGVM 309 (436)
T ss_pred HHHhhcccccccCCCCcccccCcccCCCcceEEEEecCCCCCCeEecccccCCCCHHHHHHHHhcccchhceEEEeceEE
Confidence 999999999888 9999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeC-ccCccccccccCcCCeeecccccCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhc
Q psy13354 1049 IEYDYFN-PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITK 1126 (1342)
Q Consensus 1049 v~~~~i~-p~~l~~tlesk~~~gL~~aGqi~g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~ 1126 (1342)
|+||||| |++|++|||+|.++||||||||+||+||+||++||++||+|||++++|++|++++|+++ ||||||||++.
T Consensus 310 ~~~~~i~~p~~l~~~l~~k~~~~l~~AGqi~g~~Gy~ea~a~G~~Ag~n~~~~~~g~~~~~~~~~~~-iG~l~~~l~~~ 387 (436)
T PRK05335 310 HRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVEGYVESAASGLLAGINAARLALGKEPVIPPPTTA-LGALLNYITGA 387 (436)
T ss_pred eeccccCChhhCchhccccCCCCEEeeeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCc-HHHHHHHHhcC
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999 99999999963
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=498.57 Aligned_cols=357 Identities=37% Similarity=0.620 Sum_probs=337.7
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
-|++||||++|++++||+++++.|.+++..|+++|+|||+||+|+|||++|+.+|+.++|. .+++..||+.|.+|
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~-----~~~~~~pCg~C~~C 76 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS-----NGPTSDPCGTCHNC 76 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc-----CCCCCCCccccHHH
Confidence 4899999999999999999999999999999999999999999999999999999999996 35677899999999
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCC
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEP 539 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~ 539 (1342)
..+..+.|+|++++|+++..++++++++++.+.+.|+++++||+||||+|+|+.+++|+|+++||+||++++|||+++++
T Consensus 77 ~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~ 156 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEV 156 (491)
T ss_pred HHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHH
Q psy13354 540 QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619 (1342)
Q Consensus 540 ~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~ 619 (1342)
++++++|+|||+.++|.+++.+++.+|+.++++++|+.++++++++|++.++||+|+++++|+|++.|+++.||.++|++
T Consensus 157 ~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~ 236 (491)
T PRK14964 157 KKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRD 236 (491)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccc-CCchhHHHHHHHHhc
Q psy13354 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILI-KDSPNYNEIIQLSKK 698 (1342)
Q Consensus 620 ~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~-~~~~~~~~~~~~a~~ 698 (1342)
+++...+..+|++++++..+|...|+.++++|...+ +|..++..|...+|.++..+..+.... ...+....+.+++.
T Consensus 237 llg~~~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 314 (491)
T PRK14964 237 LLGCVDKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIKSLKI- 314 (491)
T ss_pred HHccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHhC-
Confidence 999999999999999999999999999999999876 689999999999999998887654322 23345566888888
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccccc
Q psy13354 699 FNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHN 743 (1342)
Q Consensus 699 ~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~ 743 (1342)
+|...|.++|+.++++..++|.+.+|+.++||+++++|++++|++
T Consensus 315 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~~~~~~~ 359 (491)
T PRK14964 315 GSTIFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCYLSDLPS 359 (491)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999987754
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=500.67 Aligned_cols=358 Identities=46% Similarity=0.766 Sum_probs=339.3
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|||||||+.|++++||++++..|.+++..++++|+|||+||.|+|||++||.+|+.|||.. +.+..||+.|.
T Consensus 3 yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~-----~~~~ePC~~C~ 77 (515)
T COG2812 3 YQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN-----GPTAEPCGKCI 77 (515)
T ss_pred hHHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC-----CCCCCcchhhh
Confidence 5689999999999999999999999999999999999999999999999999999999999974 36789999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..|+++|++++|++++++++++|++++...+.|..+++||+||||+|+|+++++|+|||+||+||++++|||+|+
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+++|++.||+|||+.++|+.++.+++...|..++.++++.++++++..+++.++|++|+++++||++..++.+.||.+.|
T Consensus 158 e~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v 237 (515)
T COG2812 158 EPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESV 237 (515)
T ss_pred CcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhC-cccccCCchhHH-HHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQIS-PEILIKDSPNYN-EIIQL 695 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~-~~~~~~~~~~~~-~~~~~ 695 (1342)
.++++..+...+.++++++..+|...++..++++..+|.+|..++..|..++|+++.++.. +........... .+..+
T Consensus 238 ~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (515)
T COG2812 238 RDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTTEIEERTKEL 317 (515)
T ss_pred HHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhccchhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997666543 333233333333 48899
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQT 740 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~ 740 (1342)
+.+++..+|.++++.+.....++|.+.+++.++||++++++...+
T Consensus 318 a~~~~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~~~ 362 (515)
T COG2812 318 ASQISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEAAP 362 (515)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999998754
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=511.69 Aligned_cols=367 Identities=40% Similarity=0.637 Sum_probs=349.7
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..|+++|+|||+||+|+|||++|+.+++.++|......++++.++|+.|.
T Consensus 11 y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~ 90 (598)
T PRK09111 11 YRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE 90 (598)
T ss_pred chhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH
Confidence 57899999999999999999999999999999999999999999999999999999999999876655467889999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.|+|++++++++..++++++++++.+.+.|+++++|||||||+|+|+.+++|+|+++||+||++++|||+++
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+.++++++|+|||+.++|.+++.+++..||.++++++|+.++++++++|++.++||+|+++++|+|++.|+.+.||.++|
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g~g~It~e~V 250 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAV 250 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998778999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcc---cccCCchhHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPE---ILIKDSPNYNEIIQ 694 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~---~~~~~~~~~~~~~~ 694 (1342)
+++++...+.++|++++++..++...|+.+++++...|++|..++.+|+++||+++++|.+.+ ....+++...++.+
T Consensus 251 ~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~~~~p~~~~kl~~ 330 (598)
T PRK09111 251 RDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDPSLSEAERTRGAE 330 (598)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998643 34456667788999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccccc
Q psy13354 695 LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHNH 744 (1342)
Q Consensus 695 ~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~~ 744 (1342)
++++||...|.++|+.|++++.++|++.|+.+++|++++++|..++||.+
T Consensus 331 ~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~~~~lp~~ 380 (598)
T PRK09111 331 FAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYAADLPTP 380 (598)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhhccCCCH
Confidence 99999999999999999999999999999999999999999999888653
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=492.55 Aligned_cols=366 Identities=34% Similarity=0.583 Sum_probs=343.0
Q ss_pred HHHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 377 IKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 377 ~~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
.+.+|++||||++|++++||+++++.|.+++.+++++|+|||+||+|+|||++|+++++.++|.... .++.+..+|+.|
T Consensus 7 ~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~-~~~~~~~~C~~C 85 (507)
T PRK06645 7 QYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALI-TENTTIKTCEQC 85 (507)
T ss_pred cccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccc-ccCcCcCCCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999997532 234667899999
Q ss_pred cchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 457 SVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
.+|..+..+.|+|+.++|+++..++++++++++.+.+.|+++++|||||||+|+|+.+++++|++++|+|+++++||+++
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aT 165 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT 165 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC---CCCC
Q psy13354 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS---EKIT 613 (1342)
Q Consensus 537 ~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~---~~It 613 (1342)
+++++++++|+|||+.++|.+++.+++.+|+.++++++|+.++++++++|++.++||+|+++++|+|++.|++ +.||
T Consensus 166 te~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~It 245 (507)
T PRK06645 166 TEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIIS 245 (507)
T ss_pred CChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988864 3699
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCC-chhHHHH
Q psy13354 614 LNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKD-SPNYNEI 692 (1342)
Q Consensus 614 ~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~-~~~~~~~ 692 (1342)
.++|+++++...++++|+|++++..+|...|+.++++|..+|++|..++..|+.+||.++++|..+...... ......+
T Consensus 246 ~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~~~~~~~~~~~~~ 325 (507)
T PRK06645 246 PQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSLPIYESFNDRT 325 (507)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999865322111 2234568
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccccc
Q psy13354 693 IQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHN 743 (1342)
Q Consensus 693 ~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~ 743 (1342)
.+++.++|...|.++|++++++..++|.+.++++++||+++|+|++.+||.
T Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~~~~lp~ 376 (507)
T PRK06645 326 KSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIYSTSLPL 376 (507)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCCC
Confidence 899999999999999999999999999999999999999999999988865
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=490.33 Aligned_cols=365 Identities=60% Similarity=0.984 Sum_probs=345.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++++++++|+|||+||+|+|||++|+.+++.|+|.+.....+.+..+|+.|.
T Consensus 3 y~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred chhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 67899999999999999999999999999999999999999999999999999999999999765555567788999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.|+|++++++++..++++++++++.+.+.|..+++||+||||+|+|+.+.+|+|||+||+|+.+++|||+|+
T Consensus 83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++++++++|+|||+.++|.+++.+++.+||.+++.++|+.+++++++.|++.++|++|++++++++++.++.+.||.++|
T Consensus 163 ep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~It~~~V 242 (700)
T PRK12323 163 DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAV 242 (700)
T ss_pred ChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
.++++....+.++++++++..++...++.+++.+...|.++..++..|...++++...|..++.........+.+.++++
T Consensus 243 ~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~~~~~~~~~~~~a~ 322 (700)
T PRK12323 243 RGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDWPEADDIRRLAG 322 (700)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhcccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998776544333334677999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLH 742 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~ 742 (1342)
++|.++|+.+|+++++...+|+.+.+++++|||+++||+.++|..
T Consensus 323 ~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~~~p~~ 367 (700)
T PRK12323 323 RFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAFRPGQ 367 (700)
T ss_pred hCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999999999999999999997753
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-51 Score=499.09 Aligned_cols=366 Identities=51% Similarity=0.902 Sum_probs=348.1
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+.+++.++|......++.+..||+.|.
T Consensus 3 y~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 67999999999999999999999999999999999999999999999999999999999999876665677889999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.|+|++++|+++..++++++++++.+.+.|..+++||+||||+|+|+.+.+|+|+++||+||++++|||+|+
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++.+++.+|+|||..++|.+++.+++.+||.+++.++|+.++++++.+|++.++||+|+++++++|++.|+.+.||.++|
T Consensus 163 d~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~~~It~~~V 242 (618)
T PRK14951 163 DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAV 242 (618)
T ss_pred CchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccc-CCchhHHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILI-KDSPNYNEIIQLS 696 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~-~~~~~~~~~~~~a 696 (1342)
+++++...+..+|++++++..+|...++.++++|...|+++..++..|...+|+++.+|..++... ......+.+.+++
T Consensus 243 ~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 322 (618)
T PRK14951 243 RQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEAAEVARLA 322 (618)
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccccChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876543 2233556789999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccccc
Q psy13354 697 KKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHN 743 (1342)
Q Consensus 697 ~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~ 743 (1342)
+.+|.++|+.+|++++....+++.+.|+++++||+++||+.+.|...
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~~~~~~~ 369 (618)
T PRK14951 323 ALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLAFKPAAA 369 (618)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999999999999999999977543
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-51 Score=491.60 Aligned_cols=360 Identities=59% Similarity=0.968 Sum_probs=343.8
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++++++++|.|||+|++|+|||++++.+++.++|.. +.+..+|+.|.
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~-----~~~~~PCG~C~ 77 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCET-----GVTSQPCGVCR 77 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcc-----CCCCCCCcccH
Confidence 6789999999999999999999999999999999999999999999999999999999999963 34567999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|++++|.++..++++++++++.+.+.|..+++||+||||+|+|+...+|+|+++||+|+++++|||+|+
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+..+++++|+|||+.++|.+++.+++.++|.++++++|+.++++++..|++.++||+|++++++++++.|+.+.|+.+.|
T Consensus 158 d~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V 237 (830)
T PRK07003 158 DPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAV 237 (830)
T ss_pred ChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
.++++......++++++++..+|...++..+++|...|.++..++..|..+|++++..|..++...........+.++++
T Consensus 238 ~~~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a~ 317 (830)
T PRK07003 238 SGMLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAE 317 (830)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877655554556678999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLH 742 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~ 742 (1342)
++|.++|+.+|++++....+++.+.|++++|||+++||+.+.++.
T Consensus 318 ~~s~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~~~p~~ 362 (830)
T PRK07003 318 LLSPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAFEPAV 362 (830)
T ss_pred hCCHHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999998774
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=496.14 Aligned_cols=357 Identities=50% Similarity=0.828 Sum_probs=340.2
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+.+++.++|.. +.+..||+.|.
T Consensus 3 y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~-----~~~~~pCg~C~ 77 (509)
T PRK14958 3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEK-----GVSANPCNDCE 77 (509)
T ss_pred chhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCC-----CCCcccCCCCH
Confidence 5689999999999999999999999999999999999999999999999999999999999963 34568999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..++.+.++|++++++++..++++++++++.+.+.|..+++||+||||+|+|+.+++|+|+++||+||++++|||+|+
T Consensus 78 ~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred HHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++.+++++|+|||..++|.+++.+++.+|+..+++++|+.+++++++.|++.++||+|++++++++++.|+.+.||.++|
T Consensus 158 d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V 237 (509)
T PRK14958 158 DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADV 237 (509)
T ss_pred ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998788999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
.++++...++.+|++++++..+|...++.++++|...|+++..++..|...+|+++.++..++... ......+.++++
T Consensus 238 ~~~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 315 (509)
T PRK14958 238 KTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALI--ENDSEQLRQLAK 315 (509)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccc--cchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876543 224566889999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTL 741 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l 741 (1342)
.+|.++++.++++++....+||.+++++.++||++++|+.+.|-
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 359 (509)
T PRK14958 316 LLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAFYPS 359 (509)
T ss_pred hCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999998763
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-51 Score=502.54 Aligned_cols=358 Identities=39% Similarity=0.681 Sum_probs=340.5
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++++|+++|+||||||+|+|||++|+.+++.++|.. +.+..||+.|.
T Consensus 3 y~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~-----~~~~~~c~~c~ 77 (576)
T PRK14965 3 YLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQ-----GLTAEPCNVCP 77 (576)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCC-----CCCCCCCCccH
Confidence 5789999999999999999999999999999999999999999999999999999999999963 34567999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|++++++++..++++++++++.+.+.|+++++||+||||+|+|+.+++|+|+++||+||++++|||+|+
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++++++++|+|||..++|.+++.+++..|+..+++++|+.++++++..|++.++||+|+++++|+|++.|+++.||.++|
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV 237 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDV 237 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc---ccCCchhHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI---LIKDSPNYNEIIQ 694 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~---~~~~~~~~~~~~~ 694 (1342)
.++++......+|++++++..+|...++.+++++...|+++..++..|.++||+++.+|...+. .....+....+.+
T Consensus 238 ~~llG~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~~~~~~~~~~~~ 317 (576)
T PRK14965 238 AELLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAELAELRA 317 (576)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986432 2244556677899
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccc
Q psy13354 695 LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQT 740 (1342)
Q Consensus 695 ~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~ 740 (1342)
+++.||.++|.++++.+.++|+++|.+.++++.||+++++||.+.+
T Consensus 318 ~A~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~~~~ 363 (576)
T PRK14965 318 QAAAADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATLAP 363 (576)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999988999999999999998753
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=484.10 Aligned_cols=361 Identities=49% Similarity=0.819 Sum_probs=342.3
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++.+++++|+|||+||+|+|||++|+++|+.++|.. +.+..||+.|.
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~-----~~~~~pCg~C~ 76 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET-----GVTSTPCEVCA 76 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc-----CCCCCCCccCH
Confidence 4689999999999999999999999999999999999999999999999999999999999963 45668999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|++++++++..++++++++++.+.+.|..+++||+||||+|+|+..++++|++++|+|+++++||++++
T Consensus 77 sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 99999999999999999998899999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++.+++.+++|||.+++|.+++.+++.+||.++++++|+.++++++..|++.++||+|++++++++++.|+++.||.++|
T Consensus 157 d~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV 236 (702)
T PRK14960 157 DPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDV 236 (702)
T ss_pred ChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCc-hhHHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDS-PNYNEIIQLS 696 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~-~~~~~~~~~a 696 (1342)
.++++...++.+|++++++..++..+++.+++++...|.++..++..|...+|+++.++..++...... .....+.+++
T Consensus 237 ~~lLG~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~~~~la 316 (702)
T PRK14960 237 KEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKILQLS 316 (702)
T ss_pred HHHhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998776543332 3456688999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccccc
Q psy13354 697 KKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHN 743 (1342)
Q Consensus 697 ~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~ 743 (1342)
+++|...|..++++++++..++|.+.++++++||+++|||.++|+++
T Consensus 317 ~~~s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~~~p~~~ 363 (702)
T PRK14960 317 KLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAFRPLAP 363 (702)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCCCh
Confidence 99999999999999999999999999999999999999999988853
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=495.76 Aligned_cols=362 Identities=36% Similarity=0.577 Sum_probs=338.1
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCC---CCcccCCCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGN---GGITSQPCG 454 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~---~~~~~~~c~ 454 (1342)
+.++++||||++|++++||+++++.|.+++.+|+++|+|||+||+|+|||++|+.+|+.++|...... ...+..+|+
T Consensus 3 ~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg 82 (620)
T PRK14954 3 YQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG 82 (620)
T ss_pred cHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999642210 011236999
Q ss_pred CCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEE
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFIL 534 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl 534 (1342)
.|.+|..+..+.++|+.++++.+..++++++++++.+...|+++++|||||||+|.|+.+++++|+++||+||++++|||
T Consensus 83 ~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL 162 (620)
T PRK14954 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIF 162 (620)
T ss_pred cCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEE
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc-----C
Q psy13354 535 ATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS-----S 609 (1342)
Q Consensus 535 ~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~-----~ 609 (1342)
++++.+++.++|+|||++++|.+++.+++..||.++++++|+.++++++++|++.++||+|.++++++|+..|+ +
T Consensus 163 ~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~~~~ 242 (620)
T PRK14954 163 ATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEAE 242 (620)
T ss_pred EeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred CCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCC--ch
Q psy13354 610 EKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKD--SP 687 (1342)
Q Consensus 610 ~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~--~~ 687 (1342)
+.||.++|.++++...++++|++++++..++..+++.++++|...|++|..|+.+|+++||+++++|.....+... .+
T Consensus 243 ~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~~~l~~~~~~ 322 (620)
T PRK14954 243 KVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLIERPES 322 (620)
T ss_pred CccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccccccCCHH
Confidence 5699999999999999999999999999999999999999999999999999999999999999999876654332 34
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccc
Q psy13354 688 NYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739 (1342)
Q Consensus 688 ~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~ 739 (1342)
...++.+++++||.++|.++++.+.++|++||++.++++++|++++++|.+.
T Consensus 323 v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~ 374 (620)
T PRK14954 323 VKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELV 374 (620)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcc
Confidence 5778999999999999999999999999999999999999999999999864
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-50 Score=486.51 Aligned_cols=353 Identities=31% Similarity=0.534 Sum_probs=331.1
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+++++.++|.. +.+..||+.|.+|
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~-----~~~~~pCg~C~~C 76 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQ-----GPTATPCGVCESC 76 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcccc-----CCCCCcccccHHH
Confidence 68999999999999999999999999999999999999999999999999999999999963 3445799999999
Q ss_pred hhhcc--CCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 460 VKIDN--GCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 460 ~~~~~--~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
..+.. +.++|++++++++..++++++++++.+.+.|+++++||+||||+|+|+.+++|+|+++||+||++++|||+|+
T Consensus 77 ~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred HHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 99875 4578999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc-CCCCCHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS-SEKITLNS 616 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~-~~~It~e~ 616 (1342)
++++++++|+|||++++|.+++.+++.+||.++++++|+.++++++.++++.++||+|+++++|++++.|. ++.||.++
T Consensus 157 e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~ 236 (584)
T PRK14952 157 EPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQR 236 (584)
T ss_pred ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 56799999
Q ss_pred HHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcc---ccc--CCchhHHH
Q psy13354 617 MQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPE---ILI--KDSPNYNE 691 (1342)
Q Consensus 617 V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~---~~~--~~~~~~~~ 691 (1342)
|.++++......+|++++++..+|...++.+++++...|+++.+++.+|.++||+++.+|..++ .+. .+.+...+
T Consensus 237 v~~llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~~~~~~ 316 (584)
T PRK14952 237 ALGLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPEDVLER 316 (584)
T ss_pred HHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998543 222 24677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 692 IIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 692 ~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
+.+++++||.++|.++++.+.+....++++.++++.+|++++++|.
T Consensus 317 l~~qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~ 362 (584)
T PRK14952 317 MREQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLL 362 (584)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc
Confidence 9999999999999999997777777777889999999999999985
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-50 Score=482.86 Aligned_cols=362 Identities=51% Similarity=0.883 Sum_probs=343.7
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+.+++.++|.. +.+..+|+.|.
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~-----~~~~~pCg~C~ 77 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCEN-----AQHGEPCGVCQ 77 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccC-----CCCCCCCcccH
Confidence 5789999999999999999999999999999999999999999999999999999999999964 34568999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|++++++++..++++++++++.+.+.|+++++|||||||+|+|+..++++|+++||+|+++++|||+++
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTt 157 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++.+++.+|+|||..++|.+++.+++..||.++++++|+.++++++..|++.++||+|+++++|++++.|+.+.|+.++|
T Consensus 158 d~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V 237 (709)
T PRK08691 158 DPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDV 237 (709)
T ss_pred CccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998778999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
..+++...+..+|+|++++..++...++.++++|...|.++..++..|...+|+++.++..++.........+.+.+++.
T Consensus 238 ~~lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~a~ 317 (709)
T PRK08691 238 RQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHRLAQ 317 (709)
T ss_pred HHHHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876644333344567899999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHNH 744 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~~ 744 (1342)
++|.++|+.+|++++++..+|+.+.+++++|||+++||+.+.|+...
T Consensus 318 ~~~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~~~p~~~~ 364 (709)
T PRK08691 318 TISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAFAPLAAA 364 (709)
T ss_pred cCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999999999999999999999888653
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=487.07 Aligned_cols=356 Identities=41% Similarity=0.688 Sum_probs=338.7
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|+|||||++|++++||+++++.|.++++.++++|+|||+||+|+|||++|+.+++.++|... ....||+.|+
T Consensus 3 y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~-----~~~~pC~~C~ 77 (559)
T PRK05563 3 YQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNP-----PDGEPCNECE 77 (559)
T ss_pred cHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCC-----CCCCCCCccH
Confidence 56899999999999999999999999999999999999999999999999999999999999743 3457999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|+++++++++.++++++++++.+.+.|+++++||+||||+|+|+.+++|+|++++|+||++++||++|+
T Consensus 78 ~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt 157 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATT 157 (559)
T ss_pred HHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++++++++|+|||+.++|.+++.+++..|+..+++++|+.+++++++.+++.++|++|+++++|++++.|+++.||.++|
T Consensus 158 ~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V 237 (559)
T PRK05563 158 EPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDA 237 (559)
T ss_pred ChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998778999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc--cCCchhHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL--IKDSPNYNEIIQL 695 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~--~~~~~~~~~~~~~ 695 (1342)
.++++....+.+|++++++..+|...++.+++++...|+++.+++..|.++||+++.++...+.. ..+.+..+.+.++
T Consensus 238 ~~vlg~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~~~~~~~~~~~~ 317 (559)
T PRK05563 238 LEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDELFKEL 317 (559)
T ss_pred HHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865432 2345567788999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+++||.++|.+++..+.+++.++|.+.++++.+|++++++|..
T Consensus 318 a~~~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~~ 360 (559)
T PRK05563 318 SEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQ 360 (559)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhh
Confidence 9999999999999999999999999899999999999999974
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=474.86 Aligned_cols=362 Identities=36% Similarity=0.581 Sum_probs=336.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCC---CcccCCCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNG---GITSQPCG 454 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~---~~~~~~c~ 454 (1342)
..+|++||||++|++++||+++++.|.+++.+|+++|+|||+||+|+|||++|+++|+.++|+...... ..+..||+
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~ 82 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG 82 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence 468999999999999999999999999999999999999999999999999999999999996421100 01246999
Q ss_pred CCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEE
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFIL 534 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl 534 (1342)
.|.+|..+..+.++|+.++++....++++++++.+.+...|+++++|||||||+|.++.+.++.|++++|+|++.++||+
T Consensus 83 ~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il 162 (397)
T PRK14955 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIF 162 (397)
T ss_pred CCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 99999999999999999999887788999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC-----
Q psy13354 535 ATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS----- 609 (1342)
Q Consensus 535 ~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~----- 609 (1342)
++++.+++.++|++||.+++|.+++.+++.+|+..+++++|+.++++++++|++.++||+|.+.++++++..|+.
T Consensus 163 ~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~~ 242 (397)
T PRK14955 163 ATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGE 242 (397)
T ss_pred EeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred CCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccc-CCchh
Q psy13354 610 EKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILI-KDSPN 688 (1342)
Q Consensus 610 ~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~-~~~~~ 688 (1342)
+.||.++|+++++...++++|++++++.+++...|+.++++|..++++|..|+.+|.++||+++++|.+.+.+. .+++.
T Consensus 243 ~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~~~~~~~~~~~ 322 (397)
T PRK14955 243 GSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLVERPDA 322 (397)
T ss_pred CccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccCCHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999877653 44554
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccc
Q psy13354 689 Y-NEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739 (1342)
Q Consensus 689 ~-~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~ 739 (1342)
. +.+.+++++||.++|.++++.+.++|+++|++.|+++++|+++++++.+.
T Consensus 323 ~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~~~ 374 (397)
T PRK14955 323 VRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIG 374 (397)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhC
Confidence 4 57899999999999999999999999999998999999999999999864
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=487.55 Aligned_cols=357 Identities=36% Similarity=0.577 Sum_probs=338.6
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.++|+||||.+|++++||+++++.|.+++++|+++|+||||||+|+|||++|+.+++.++|..+. ....+|+.|.
T Consensus 4 ~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~----~~~~~Cg~C~ 79 (614)
T PRK14971 4 YIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLT----ADGEACNECE 79 (614)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCC----CCCCCCCcch
Confidence 578999999999999999999999999999999999999999999999999999999999997532 2357899999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++++.++++++..++++++++++.+.+.|+++++|||||||+|.|+.+++++|+++||+||++++|||+++
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+++++.++|+|||.+++|.+++.+++..||.++++++|+.++++++++|++.++||+|+++++++++..|+++.||.++|
T Consensus 160 ~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~V 239 (614)
T PRK14971 160 EKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSV 239 (614)
T ss_pred CchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999878999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc--ccCCchhHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI--LIKDSPNYNEIIQL 695 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~--~~~~~~~~~~~~~~ 695 (1342)
.+++....++++|+|++++.+++...++.++++|+..|++|..|+.+|+++||+++.+|..... .....+..+.+.++
T Consensus 240 ~~~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll~v~~~~~~~~~~q 319 (614)
T PRK14971 240 IENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGESIRQRYLEQ 319 (614)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999976442 22345567789999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+++||.++|.++++.+.++|+.+|++.|+++.+|++++++|.+
T Consensus 320 a~~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~ 362 (614)
T PRK14971 320 AQKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQL 362 (614)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999986
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-49 Score=481.20 Aligned_cols=360 Identities=32% Similarity=0.594 Sum_probs=335.4
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+||+||||++|++++||+++++.|.+++++++++|+||||||+|+|||++|+++++.++|.. +.+..||+.|.
T Consensus 3 y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~-----~~~~~pC~~C~ 77 (563)
T PRK06647 3 YRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVN-----GPTPMPCGECS 77 (563)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcccc-----CCCCCCCccch
Confidence 5789999999999999999999999999999999999999999999999999999999999863 34557999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|+.++++++..++++++++.+.+.+.|+++++||+||||+|+|+.+++|+|++++|+||++++||++++
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecC
Confidence 99999999999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++++++++|+|||+.++|.+++.+++.+|+.++++++|+.++++++.+|++.++||+|+++++|+|++.|+++.||.++|
T Consensus 158 e~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~It~e~V 237 (563)
T PRK06647 158 EVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQI 237 (563)
T ss_pred ChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
.++++....+.+|++++++..+|...|+.+++++...|+++..++.+|+++||+++.+|.+.............+.++++
T Consensus 238 ~~llg~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~~~e~l~k~~~ 317 (563)
T PRK06647 238 RSKMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKAERLPEKLR 317 (563)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998753321111122234667778
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLH 742 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~ 742 (1342)
+|+.++|.++++.+.+++.++|.+.++++++|++++++|.....+
T Consensus 318 ~~s~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~~~~~~ 362 (563)
T PRK06647 318 EFDLSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRLKDYV 362 (563)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccCC
Confidence 899999999999999999999999999999999999999875443
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-49 Score=479.27 Aligned_cols=359 Identities=56% Similarity=0.942 Sum_probs=342.3
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+.+++.++|+. +.+..||+.|.
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~-----~~~~~pcg~C~ 77 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCET-----GVTATPCGVCS 77 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCC-----CCCCCCCCCCH
Confidence 5789999999999999999999999999999999999999999999999999999999999963 34567999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
.|..++.+.++|++++++++..++++++++++.+...|+++++||+||||+|.|+.+++|+|++++|+||++++|||+|+
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~ 157 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++.+++++|+|||..++|.+++.+++.+|+.++++++|+.+++++++.|++.++||+|++++++++++.|+.+.|+.++|
T Consensus 158 d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~I~~~~v 237 (527)
T PRK14969 158 DPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEV 237 (527)
T ss_pred ChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
.++++...++.+|++++++..++...++.++++|...|+++..+|..|+..||+++.+|..++......+....+.+++.
T Consensus 238 ~~~~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~~~~~a~ 317 (527)
T PRK14969 238 RAMLGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDRLLDLAK 317 (527)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876655455556778999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTL 741 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l 741 (1342)
++|.++|+.+++.+.++..+|+.+++++++|||+++||+.+.|.
T Consensus 318 ~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~ 361 (527)
T PRK14969 318 RLSPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAFRPS 361 (527)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999775
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=477.11 Aligned_cols=359 Identities=48% Similarity=0.801 Sum_probs=339.6
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..|+++|+|||+||+|+|||++|+.+++.++|.. +.+..||+.|.
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~-----~~~~~pCg~C~ 77 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCET-----GITATPCGECD 77 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhcc-----CCCCCCCCCCH
Confidence 5789999999999999999999999999999999999999999999999999999999999962 34567999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.|+|++++++++..++++++++++.+...|..+++||+||||+|+|+.+++|+||++||+||++++||++|+
T Consensus 78 ~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred HHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC
Confidence 99999999999999999987789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++.+++++|+|||..+.|.+++.+++..+|.++++++|+.++++++..|++.++|++|++++++++++.++++.||.++|
T Consensus 158 ~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~it~~~v 237 (647)
T PRK07994 158 DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDV 237 (647)
T ss_pred CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc-cCCchhHHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL-IKDSPNYNEIIQLS 696 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~-~~~~~~~~~~~~~a 696 (1342)
.++++....+.++++++++..++...++..+++|...|.++..++..|...+|+++.++..++.. ..+.+....+..++
T Consensus 238 ~~~lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~~~~d~~~~l~~la 317 (647)
T PRK07994 238 SAMLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIELRLRELA 317 (647)
T ss_pred HHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcccchhHHHHHHHHH
Confidence 99999988889999999999999999999999999999999999999999999999999876643 23344445789999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccc
Q psy13354 697 KKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTL 741 (1342)
Q Consensus 697 ~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l 741 (1342)
++++.++++.+++++.++..+|+.+.|++++|||++++|+.|.|-
T Consensus 318 ~~~s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~~~P~ 362 (647)
T PRK07994 318 RTLPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAFHPA 362 (647)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999763
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-48 Score=465.72 Aligned_cols=357 Identities=39% Similarity=0.616 Sum_probs=333.8
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++++++++|+||||||+|+|||++|+.+++.++|.. +.+..||+.|.
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~-----~~~~~pc~~c~ 77 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLN-----PQEGEPCGKCE 77 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcC-----CCCCCCCCccH
Confidence 5799999999999999999999999999999999999999999999999999999999999853 23346999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..++.+.++|++++++++..++++++++.+.+.+.|++++++|+||||+|+|+.+++++|++++++||++++||++++
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+.++++++|++||+.++|.+++.+++..|+.++++++|+.++++++++|++.++||+|+++++|++++.|++++||.++|
T Consensus 158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~It~~~V 237 (486)
T PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVV 237 (486)
T ss_pred CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
+++++.+.++++|+|++++..++...|+.++++|...|++|..++++|.++||+++.+|.....-....+. ..+.+ .
T Consensus 238 ~~~lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~-~~~~~--~ 314 (486)
T PRK14953 238 EEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVE-DFYRK--L 314 (486)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchH-HHHHH--h
Confidence 99999999999999999999999999999999999999999999999999999999999865432222222 33333 7
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHN 743 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~ 743 (1342)
++|.+.|..+++.+.++...++. .++++++|++++++|+++++++
T Consensus 315 ~~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~~~~~~~ 359 (486)
T PRK14953 315 EKPLEALLYLEDVINKAFSEART-RDPLRAYELAILKLLYVKDIVP 359 (486)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHhhCCCCC
Confidence 89999999999999999999999 9999999999999999877754
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-48 Score=453.95 Aligned_cols=357 Identities=47% Similarity=0.755 Sum_probs=337.4
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+.+++.++|.. +....||+.|.
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~-----~~~~~pc~~c~ 77 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQN-----GITSNPCRKCI 77 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCC-----CCCCCCCCCCH
Confidence 5689999999999999999999999999999999999999999999999999999999999853 34567999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|+.++++++..++++++++++.+.+.|++++++|+||||+|.++.+++++|++++|+||++++||++++
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 99999999999999999887788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+.+++.++|+|||..++|.+++.+++.+|+.++++++|+.+++++++++++.++||+|+++++++++..++.+.||.++|
T Consensus 158 ~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~It~~~v 237 (363)
T PRK14961 158 DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNV 237 (363)
T ss_pred ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998788999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc-cCCch-hHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL-IKDSP-NYNEIIQL 695 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~-~~~~~-~~~~~~~~ 695 (1342)
.++++...+..+|++++++..++...++.+++++...|++|..++.+|...+|+++..|...+.. ....+ ....+.++
T Consensus 238 ~~~l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (363)
T PRK14961 238 TDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQIQKI 317 (363)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876542 33344 56789999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~ 739 (1342)
++++|.++|.++++.+.++..+||.+.++++++|+++++++.+.
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~~~ 361 (363)
T PRK14961 318 AQNNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAINAI 361 (363)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999874
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-48 Score=486.72 Aligned_cols=354 Identities=34% Similarity=0.574 Sum_probs=332.6
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
++|++||||++|++|+||+++++.|.+++.+++++|+|||+||+|+|||++|+.|++.|+|.. +.+..+|+.|.+
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~-----~~~~~pCg~C~s 77 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVE-----GPTSTPCGECDS 77 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCccc-----CCCCCCCcccHH
Confidence 578999999999999999999999999999999999999999999999999999999999963 345569999999
Q ss_pred hhhhccC--CCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 459 CVKIDNG--CFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 459 ~~~~~~~--~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
|..+..+ .++|+++++..+..++++++++.+.+...|..+++||+||||+|+|+.+.+|+|+++||+++++++|||+|
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 9999988 67899999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC-CCCCHH
Q psy13354 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS-EKITLN 615 (1342)
Q Consensus 537 ~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~-~~It~e 615 (1342)
++.++++++|+|||++++|.+++.+++.+||.++++++|+.++++++.+|++.++||+|+++++|+|++.+++ +.||.+
T Consensus 158 t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e 237 (824)
T PRK07764 158 TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYE 237 (824)
T ss_pred CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998864 569999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc---cc--CCchhHH
Q psy13354 616 SMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI---LI--KDSPNYN 690 (1342)
Q Consensus 616 ~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~---~~--~~~~~~~ 690 (1342)
+|.++++......+|++++++..+|...++.++++|+..|+++..++.+|.++||+|+.+|...+. .. ...+...
T Consensus 238 ~V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~d~~~ 317 (824)
T PRK07764 238 RAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPADQLD 317 (824)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999976532 11 2366778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 691 EIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 691 ~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
++.+++++|+.++|.++++.+.++...+|++.++++.+|+++++|+.
T Consensus 318 ~L~~qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll 364 (824)
T PRK07764 318 RMRAQAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLL 364 (824)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Confidence 89999999999999999999999988999999999999999999984
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-48 Score=452.87 Aligned_cols=355 Identities=35% Similarity=0.534 Sum_probs=327.8
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||++++..|.+++.+++++|+|||+||+|+|||++|+.+|+.++|.. +.+..+|+.|.
T Consensus 5 ~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~-----~~~~~pCg~C~ 79 (484)
T PRK14956 5 HEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCEN-----PIGNEPCNECT 79 (484)
T ss_pred cchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCccc-----ccCccccCCCc
Confidence 5689999999999999999999999999999999999999999999999999999999999964 33467999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.+++++++++++..++++++++++.+...|..++++|+||||+|+|+.+++|+|++++|+||.+++||++|+
T Consensus 80 sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTt 159 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATT 159 (484)
T ss_pred HHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecC
Confidence 99999999999999999988889999999999999889889999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++++++++|+|||+.+.|.+++.+++.+++.++++++|+.++++++..|++.++|++|++++.||+++.++++.||.+.|
T Consensus 160 e~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V 239 (484)
T PRK14956 160 EFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKI 239 (484)
T ss_pred ChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888778999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccCh-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCc-cc--ccCCchhHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDG-NLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP-EI--LIKDSPNYNEII 693 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~-~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~-~~--~~~~~~~~~~~~ 693 (1342)
.++++....+.++++++++..++. ..++..+++++..|++|..++..|+.+||+++.++... .. .....+..+.+.
T Consensus 240 ~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~ 319 (484)
T PRK14956 240 RKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPKEDLQKMK 319 (484)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCHHHHHHHH
Confidence 999999999999999999999875 68999999999999999999999999999999998752 22 222345667799
Q ss_pred HHHhcCCHHHHHHHHHHHHH----H-HHhhccCCChhHHHHHHHHHhHc
Q psy13354 694 QLSKKFNIEQIQLFYQISIH----G-RNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 694 ~~a~~~s~~~L~~~l~~l~~----~-d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
++++.++...|.++...+.+ + +..+|++.+|++.+|+.++++|.
T Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~ 368 (484)
T PRK14956 320 SDFENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVE 368 (484)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhc
Confidence 99999999999988765532 2 45678899999999999999984
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=461.01 Aligned_cols=359 Identities=45% Similarity=0.772 Sum_probs=336.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+.+++.++|.. +.+..+|+.|.
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~-----~~~~~pCg~C~ 77 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKT-----GVTAEPCNKCE 77 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCC-----CCCCCCCcccH
Confidence 5789999999999999999999999999999999999999999999999999999999999963 34557999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|++++++++..++++++++++.+.+.|+++++||+||||+|.|+.+++++|++++|+||++++||++|+
T Consensus 78 sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred HHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+..+++++|+|||..++|.+++.+++.+||.++++++|+.++++++++|++.++||+|+++++|++++.|+++.|+.++|
T Consensus 158 d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V 237 (546)
T PRK14957 158 DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQI 237 (546)
T ss_pred ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
+++++....+.+|++++++..++...++..++.+...+.+...+|..|...+..++.++........+.+....+.+++.
T Consensus 238 ~~~l~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~a~ 317 (546)
T PRK14957 238 KQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVNDIDVDIINNILA 317 (546)
T ss_pred HHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999994444477777766544455556678999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTL 741 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l 741 (1342)
++|.++|+.+++.+..+...|+.+.+++++|||+++||+.+.|-
T Consensus 318 ~~s~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~~p~ 361 (546)
T PRK14957 318 KISIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAFQKK 361 (546)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999763
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=460.03 Aligned_cols=360 Identities=34% Similarity=0.630 Sum_probs=336.7
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|++||||++|++++||+++++.|.+++++++++|+|||+||+|+|||++|+.+++.++|.. ..+..+|+.|.
T Consensus 3 ~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~-----~~~~~pCg~C~ 77 (624)
T PRK14959 3 HASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCET-----APTGEPCNTCE 77 (624)
T ss_pred cchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccC-----CCCCCCCcccH
Confidence 4589999999999999999999999999999999999999999999999999999999999953 23456999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.|+|++++++++..++++++++.+.+...|++++++||||||+|+|+.+.+++|++++|+|+++++||++|+
T Consensus 78 sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt 157 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT 157 (624)
T ss_pred HHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+++++.++|+|||+.++|.+++.+++..||.++++++|+.+++++++.|++.++||+|+++++|++++....+.||.++|
T Consensus 158 ~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~V 237 (624)
T PRK14959 158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGA 237 (624)
T ss_pred ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987666678999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc----ccCCchhHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI----LIKDSPNYNEII 693 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~----~~~~~~~~~~~~ 693 (1342)
.++++....+++|++++++..++...++.++.+|...|+++..++..|..+||+++.++..... .....+..+.+.
T Consensus 238 ~~~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~l~i~~~~~~~~~ 317 (624)
T PRK14959 238 RGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPEDEARQWL 317 (624)
T ss_pred HHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhhcccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999865332 233455667789
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccc
Q psy13354 694 QLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLH 742 (1342)
Q Consensus 694 ~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~ 742 (1342)
+++++||..+|..+++.++++...|+.+.++++++|+++++++.++++.
T Consensus 318 ~~A~~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~~~~~~ 366 (624)
T PRK14959 318 GWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAMLPRLM 366 (624)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999999999999999887664
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=466.44 Aligned_cols=357 Identities=48% Similarity=0.812 Sum_probs=335.4
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|++++..++++|+|||+||+|+|||++|+++++.++|.. ..+..+|+.|.
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~-----~~~~~pCg~C~ 77 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQ-----GVTATPCGVCS 77 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCcc-----CCCCCCCCCch
Confidence 5789999999999999999999999999999999999999999999999999999999999963 23557999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.+++++++++++..++++++++++.+...|..+++||+||||+|+|+.+++|+|+++||+||.+++||++|+
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 99999999999999999987789999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++.+++++|+|||.+++|.+++.+++..+|.+++..+++.++++++..|++.++|++|++++++++++.+..+.++.+.|
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V 237 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQV 237 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc--ccCCchhHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI--LIKDSPNYNEIIQL 695 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~--~~~~~~~~~~~~~~ 695 (1342)
.++++......+..+++++..++...++..++.|+..|.++..|+..|..+||+++..|..... .... ...+.++
T Consensus 238 ~~llG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~---~e~i~~~ 314 (944)
T PRK14949 238 QTMLGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLY---SEQIRAF 314 (944)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhccch---HHHHHHH
Confidence 9999999988999999999999999999999999999999999999999999999998876541 1111 2568889
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLH 742 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~ 742 (1342)
+.++|.++|.++++++.++...||.+.++++.||+++++++.+.|..
T Consensus 315 a~~~s~~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~~~p~~ 361 (944)
T PRK14949 315 AEQLSPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFVPEK 361 (944)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999999999999999999999999986654
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=452.14 Aligned_cols=346 Identities=37% Similarity=0.604 Sum_probs=328.1
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.++++.|+++|+||||||+|+|||++|+.+++.+.|.... ....+|+.|.
T Consensus 4 ~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~----~~~~~c~~c~ 79 (451)
T PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPT----EDQEPCNQCA 79 (451)
T ss_pred hHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcc----cCCCCCcccH
Confidence 568999999999999999999999999999999999999999999999999999999999996432 2346899999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++++.++++.+..++++++++.+.+...|.+++++||||||+|.++.++++.|++++|+|+++++||++++
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~ 159 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATT 159 (451)
T ss_pred HHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeC
Confidence 99999999999999999877788999999999888888889999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+++++.++|+|||..++|.+++.+++.+|+..+++++|+.+++++++.|++.++||+|.++++++++..|.++.||.++|
T Consensus 160 ~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~V 239 (451)
T PRK06305 160 EIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSV 239 (451)
T ss_pred ChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887777999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
.++++...++++|+|++++..++...|+.++++|...|++|..++.+|.++||+++.+|.. +.+.++++
T Consensus 240 ~~l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~-----------~~~~~~a~ 308 (451)
T PRK06305 240 AKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYN-----------KQLSSVAT 308 (451)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhh-----------hHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999762 35788999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+||.++|.+++..+.++|+++|++.++.+.||+++++++.+
T Consensus 309 ~~s~~~L~~ii~~l~e~d~~lk~~~~~k~~lE~lll~l~~~ 349 (451)
T PRK06305 309 KYSSEQLLEIIDFLGESAKHIQLTIFEKTFLETVIIHLIRI 349 (451)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999989999999999999974
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=441.29 Aligned_cols=353 Identities=44% Similarity=0.749 Sum_probs=333.0
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
.+|++||+|.+|++++||+.+++.|.+++++|+++|+||||||||+|||++|+.+++.+.|.. ..+..+|+.|++
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~-----~~~~~~c~~c~~ 76 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQN-----GPDGEPCNECES 76 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC-----CCCCCCCCCCHH
Confidence 479999999999999999999999999999999999999999999999999999999999862 234579999999
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE 538 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~ 538 (1342)
|..+..+.++++.++++....++++++++++.+.+.|+++++|||||||++.++...++.|++++++||+++++|+++++
T Consensus 77 c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 156 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTE 156 (355)
T ss_pred HHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCC
Confidence 99999999999999998877788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHH
Q psy13354 539 PQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618 (1342)
Q Consensus 539 ~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~ 618 (1342)
++++.++|++||..++|.+++.+++.+|+..+++++|+.+++++++.+++.++||+|.+.++++++..|+++.||.++|+
T Consensus 157 ~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~ 236 (355)
T TIGR02397 157 PHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVN 236 (355)
T ss_pred HHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCc-ccccCCchhHHHHHHHHh
Q psy13354 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP-EILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 619 ~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~-~~~~~~~~~~~~~~~~a~ 697 (1342)
+++....+.++|++++++..++...|+.+++++...|++|..++.+|.++||+++.+|... .....+++..+.+.++++
T Consensus 237 ~~~~~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i~~~~~~~l~~~a~ 316 (355)
T TIGR02397 237 ELLGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFLKELAL 316 (355)
T ss_pred HHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999754 333355566788899999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhH
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRML 736 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~ 736 (1342)
+||.++|..+++.+.++|+.+|++.|+++.+|.+++++|
T Consensus 317 ~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 317 KLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 999999999999999999999999999999999999997
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=462.37 Aligned_cols=356 Identities=37% Similarity=0.572 Sum_probs=335.1
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
.+|++||||++|++++||+++++.|.+++..++++|+||||||+|+|||++|+.+++.++|.... .+..+|+.|..
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~----~~~~~c~~c~~ 79 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTND----PKGRPCGTCEM 79 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCC----CCCCCCccCHH
Confidence 46899999999999999999999999999999999999999999999999999999999996532 23469999999
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE 538 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~ 538 (1342)
|..+..+.++|+++++.+...++++++++++.+...|+++++|||||||+|.|+.+.++.|++++|+|+++++||+++++
T Consensus 80 c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred HHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 99999999999999998777889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHH
Q psy13354 539 PQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618 (1342)
Q Consensus 539 ~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~ 618 (1342)
.+++.++|+|||..++|.+++..++..|+..+++++|+.+++++++.|++.++||+|.++++|+++..|.++.||.++|+
T Consensus 160 ~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~It~e~V~ 239 (585)
T PRK14950 160 VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQ 239 (585)
T ss_pred hhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc--ccCCchhHHHHHHHH
Q psy13354 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI--LIKDSPNYNEIIQLS 696 (1342)
Q Consensus 619 ~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~--~~~~~~~~~~~~~~a 696 (1342)
++++.+.+.++|++++++..+|...+++++++|...|+++..+++.|.++||+++.++..... ...+.+..+.+.+++
T Consensus 240 ~ll~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~~~~~~qa 319 (585)
T PRK14950 240 SLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKAALQKVS 319 (585)
T ss_pred HHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875432 234566778899999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 697 KKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 697 ~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
++||.++|.++++.+.++|+++|++.++++.+|++++++|..
T Consensus 320 ~~~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~~ 361 (585)
T PRK14950 320 QIANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALLV 361 (585)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcC
Confidence 999999999999999999999998777899999999999964
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-46 Score=454.30 Aligned_cols=358 Identities=37% Similarity=0.638 Sum_probs=327.7
Q ss_pred HHHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 377 IKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 377 ~~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
.+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+++|+.++|... .....||+.|
T Consensus 4 ~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~----~~~~~pC~~C 79 (725)
T PRK07133 4 KYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHK----TDLLEPCQEC 79 (725)
T ss_pred chhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccccc----CCCCCchhHH
Confidence 468999999999999999999999999999999999999999999999999999999999999642 2234678888
Q ss_pred cchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 457 SVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
..| .+.++|++++++++..++++++++++.+.+.|+++++||+||||+|+|+.+++++|+++||+||++++||++|
T Consensus 80 ~~~----~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 80 IEN----VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred HHh----hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 877 3568899999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHH
Q psy13354 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNS 616 (1342)
Q Consensus 537 ~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~ 616 (1342)
+++++++++|+|||++++|.+++.+++..||..+++++|+.+++++++.+++.++|++|+++++++++..|+.++||.++
T Consensus 156 te~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It~e~ 235 (725)
T PRK07133 156 TEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKN 235 (725)
T ss_pred CChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877899999
Q ss_pred HHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc-ccCCchhHHHHHHH
Q psy13354 617 MQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI-LIKDSPNYNEIIQL 695 (1342)
Q Consensus 617 V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~-~~~~~~~~~~~~~~ 695 (1342)
|.++++....+.+|++++++..++...++.++++|...|++|..++.+|...+|+++.++..... +....+. ..+.+.
T Consensus 236 V~ellg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~-~~l~~~ 314 (725)
T PRK07133 236 VEELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSE-EDLEKL 314 (725)
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCH-HHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999988754332 2222222 334443
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccccccc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHNHL 745 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~~~ 745 (1342)
+++..+|..+++.+.++...|+.+.++++.+|+++++++.+++++.+.
T Consensus 315 --~~s~~~l~~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~~~~~~~~~ 362 (725)
T PRK07133 315 --KIDDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLALSELEEED 362 (725)
T ss_pred --cCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCchhH
Confidence 789999999999999999999999999999999999999988776544
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=403.85 Aligned_cols=375 Identities=64% Similarity=1.026 Sum_probs=359.1
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
..+...+|.+++.+..+..++++.|.|.+|||+.|+.|++|+.+.+.++|.+|||+.+||++++..+++|..+.++.+++
T Consensus 5 ~~l~~~d~~i~~~i~~e~~rq~~~ieLIASEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~L 84 (413)
T COG0112 5 ASLADYDPEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKL 84 (413)
T ss_pred hhHHhcCHHHHHHHHHHHHHHhhceeeeeccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHH
Confidence 35566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHh
Q psy13354 86 FNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKK 164 (1342)
Q Consensus 86 ~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~ 164 (1342)
||++.+.+.+.||+.||.+++.++++|||+|+.+++.+++|.+++......|..++.++++++ +++.+|+|++++.+.+
T Consensus 85 Fga~~anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e 164 (413)
T COG0112 85 FGAEYANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKE 164 (413)
T ss_pred hCCCccccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888999999999999999 7799999999999999
Q ss_pred cCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEec-
Q psy13354 165 NKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK- 243 (1342)
Q Consensus 165 ~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~- 243 (1342)
++|++|+...|.|+...|++++.++|++.|++|++|.||-+|.+.++.+++|++.+|++++|.||+|.||.||+|++++
T Consensus 165 ~kPK~ii~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPrGG~Il~~~e 244 (413)
T COG0112 165 VKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPRGGIILTNDE 244 (413)
T ss_pred hCCCEEEECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCCceEEEeccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
++.+.++...+|+..++|..+.++|.+.++.+.++.+++++.++..+|++.|.+.|.+.|++++++++++|.+.+++...
T Consensus 245 el~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~ 324 (413)
T COG0112 245 ELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGGTDNHLVLVDLRSK 324 (413)
T ss_pred HHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCCccceEEEEEcccC
Confidence 89999999999999999999999999999999999899999999999999999999999999999999999999999966
Q ss_pred CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 324 KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
+.+...+..+|++.||.+....+|..+..++-+++||+++.+.|++++.+.++..++
T Consensus 325 ~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia 381 (413)
T COG0112 325 GLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIA 381 (413)
T ss_pred CCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHH
Confidence 678899999999999999999999998888889999999999999999988876544
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=442.10 Aligned_cols=358 Identities=38% Similarity=0.623 Sum_probs=334.4
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|..||+|++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+.+|+.++|.... .++..+|+.|.
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~---~~~~~~Cg~C~ 79 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSD---KPTPEPCGKCE 79 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcC---CCCCCCCcccH
Confidence 457999999999999999999999999999999999999999999999999999999999996432 23457999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
.|..+..+.|+|+++++.....+++.++++++.+...|+++++|||||||+|.|+.+++++|+++||+|+.+++||++++
T Consensus 80 ~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~ 159 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATT 159 (620)
T ss_pred HHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeC
Confidence 99999999999999999887789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+++++.++|+|||..++|.+++.+++..|+..+++++|+.++++++..+++.++|++|++.++++++..|. +.||.++|
T Consensus 160 ~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~-~~It~e~V 238 (620)
T PRK14948 160 DPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLP-GPITPEAV 238 (620)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc-CCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988775 57999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc---cCCchhHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL---IKDSPNYNEIIQ 694 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~---~~~~~~~~~~~~ 694 (1342)
.++++...+..+|++++++..++...++.++++|+..|+++..+|.+|+++||+++.+|...+.. ..+.+..+.+.+
T Consensus 239 ~~lvg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~i~~d~~~~l~~ 318 (620)
T PRK14948 239 WDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSQQTWDELCK 318 (620)
T ss_pred HHHhcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865431 123455677899
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccc
Q psy13354 695 LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739 (1342)
Q Consensus 695 ~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~ 739 (1342)
++++|+..+|.++++.+.++|+.+|++.++++++|.++++++...
T Consensus 319 ~A~~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~~~ 363 (620)
T PRK14948 319 LAKQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPSA 363 (620)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999998753
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=425.19 Aligned_cols=336 Identities=43% Similarity=0.703 Sum_probs=313.9
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
+|++||||++|++++||+++++.|.++++.|+++|+||||||+|+|||++|+.+++.+.|.. +.+..||+.|.+|
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~-----~~~~~pC~~C~~C 77 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQ-----GPSSTPCDTCIQC 77 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCC-----CCCCCCCcccHHH
Confidence 78999999999999999999999999999999999999999999999999999999999863 2345799999999
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCC
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEP 539 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~ 539 (1342)
..+..+.|++++++++++..++++++++++.....|+++++||+||||+|.|+.+++++|++++|+||++++|||+++++
T Consensus 78 ~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~ 157 (535)
T PRK08451 78 QSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDP 157 (535)
T ss_pred HHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECCh
Confidence 99999999999999998878999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHH
Q psy13354 540 QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619 (1342)
Q Consensus 540 ~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~ 619 (1342)
.+++++|+|||..++|.+++.+++..|+.++++++|+.+++++++.|++.++||+|+++++|++++.|+.+.||.++|.+
T Consensus 158 ~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~~ 237 (535)
T PRK08451 158 LKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVAD 237 (535)
T ss_pred hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcC
Q psy13354 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKF 699 (1342)
Q Consensus 620 ~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~ 699 (1342)
+++....+.+|++++++..++...++.+++++ .|.++..++..|..++++++... ...+
T Consensus 238 ~lg~~~~~~I~~li~ai~~~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~-------------------~~~~ 296 (535)
T PRK08451 238 MLGLLDPSKLEDFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSK-------------------DSEF 296 (535)
T ss_pred HhCCCCHHHHHHHHHHHHhcCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcc-------------------cccc
Confidence 99999999999999999999999999999998 46889999999999998875321 1135
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccc
Q psy13354 700 NIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTL 741 (1342)
Q Consensus 700 s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l 741 (1342)
+...+.+.++++.+++..++.+.++++.+|+++++||...++
T Consensus 297 ~l~~l~r~~riL~~~k~~l~~g~~~~i~l~~~~~~~~~~~~~ 338 (535)
T PRK08451 297 SILLYERFFRILSSAKSLLKEGADDGFVLLLMLFKMKEALKL 338 (535)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCc
Confidence 566788999999999999999999999999999999986444
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=424.18 Aligned_cols=339 Identities=34% Similarity=0.539 Sum_probs=312.4
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
+|++||||++|++++||+++++.|.+++..++++|+||||||+|+|||++|+++++.++|.+. ...+|+.|.+|
T Consensus 3 ~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~------~~~~cg~C~sc 76 (504)
T PRK14963 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGE------DPKPCGECESC 76 (504)
T ss_pred hHHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCC------CCCCCCcChhh
Confidence 689999999999999999999999999999999999999999999999999999999998642 23599999999
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCC
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEP 539 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~ 539 (1342)
..+..+.|+|+.++++++..++++++++.+.+...|++++++||||||+|.++.+.+++|++++++|+++++||++++++
T Consensus 77 ~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~ 156 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEP 156 (504)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCCh
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHH
Q psy13354 540 QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619 (1342)
Q Consensus 540 ~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~ 619 (1342)
+++.++++|||..++|.+++.+++..||.++++++|+.++++++++|++.++||+|+++++|++++.+ ++.||.++|.+
T Consensus 157 ~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~-~~~It~~~V~~ 235 (504)
T PRK14963 157 EKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL-GTPVTRKQVEE 235 (504)
T ss_pred hhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998876 55799999999
Q ss_pred HhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcC
Q psy13354 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKF 699 (1342)
Q Consensus 620 ~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~ 699 (1342)
+++...++++|++++++..++...|+.++++|+..|++|..|+..|.++||.++++|.+...... ..+
T Consensus 236 ~l~~~~~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~------------~~~ 303 (504)
T PRK14963 236 ALGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPR------------LEG 303 (504)
T ss_pred HHCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCcccc------------ccc
Confidence 99999999999999999999999999999999999999999999999999999999976432210 013
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 700 NIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 700 s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+...+..++..+.+.++.+-.+.+ +..+|+.++++|..
T Consensus 304 ~~~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~l~~~~~~ 341 (504)
T PRK14963 304 AEPRLLAAMTALDEQMERFARRSD-ALSLELALLHALLA 341 (504)
T ss_pred CcHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHhh
Confidence 446788899999999988665443 56799999999963
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=412.13 Aligned_cols=344 Identities=36% Similarity=0.536 Sum_probs=315.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+++|++||+|.+|++++||+.+++.+.+.+++|+++|+||||||||+|||++++.+++.++|.... .+|
T Consensus 4 ~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~-------~~~---- 72 (367)
T PRK14970 4 FVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYD-------DPN---- 72 (367)
T ss_pred hHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCC----
Confidence 578999999999999999999999999999999999999999999999999999999999874211 011
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
.....++++++.....++++++++++++...|+++++++|+|||++.++...++.|++++++|++++++|++++
T Consensus 73 ------~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~ 146 (367)
T PRK14970 73 ------EDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATT 146 (367)
T ss_pred ------CCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeC
Confidence 11234567777766677889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+++++.+++.|||.+++|.+++++++..|+...++++|+.++++++++|++.++||+|.+.++++++..|+++.||.++|
T Consensus 147 ~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v 226 (367)
T PRK14970 147 EKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAV 226 (367)
T ss_pred CcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc--ccCCchhHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI--LIKDSPNYNEIIQL 695 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~--~~~~~~~~~~~~~~ 695 (1342)
+++++...++++|++++++..++...++.+++++...|++|..|+.+|.++||+++++|...+. ...+++..+.+.++
T Consensus 227 ~~~~~~~~~~~if~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l~~~~~~~~~~~~~ 306 (367)
T PRK14970 227 TENLNILDYDTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQ 306 (367)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999874321 23446778889999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+++||.++|.+++..+.++|.++|++.++++.+|++++++|..
T Consensus 307 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~l~lE~~l~~l~~~ 349 (367)
T PRK14970 307 SQKVSQSFLLSGIDIANDCDLKYKLSKNQRLLVELALMQLASI 349 (367)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhc
Confidence 9999999999999999999999999889999999999999874
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=421.37 Aligned_cols=353 Identities=36% Similarity=0.633 Sum_probs=318.3
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++.+++++|+|||+||+|+|||++|+.+|+.++|..+ .+..+|+.|.
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~-----~~~~~Cg~C~ 77 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNP-----KDGDCCNSCS 77 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCC-----CCCCCCcccH
Confidence 45899999999999999999999999999999999999999999999999999999999999753 2346999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.|+|++++++++..++++++++++.+.+.|+++++||+||||+|+|+.+++++|+++||+||+++++|++|+
T Consensus 78 sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt 157 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATT 157 (605)
T ss_pred HHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++++++++|+|||++++|.+++.+++..|+..+++++|+.+++++++.+++.++||+|+++++++++..|.+..||.++|
T Consensus 158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~It~e~V 237 (605)
T PRK05896 158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDI 237 (605)
T ss_pred ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc-cC--CchhHHHH--
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL-IK--DSPNYNEI-- 692 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~-~~--~~~~~~~~-- 692 (1342)
.++++......+|++++++..++...++.++++|...|++|..++..|..+||+++..+...... .. .....+.+
T Consensus 238 ~ellg~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RDlL~~k~~~~~~~L~~~~~~~~~~~~~ 317 (605)
T PRK05896 238 NKTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTKNINLLKKLSKEQLKTLNL 317 (605)
T ss_pred HHHhccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhcCChhhhhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888754431 11 12222222
Q ss_pred ---HHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 693 ---IQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 693 ---~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+-++-.|.. .-.+..+.++-..||.+.++...+|..+.++...
T Consensus 318 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (605)
T PRK05896 318 EKQKLLSIEFNT---NFLLNNFVSLINRLKASVNQVFEFEIYLYKIINA 363 (605)
T ss_pred HHHHHhhhhccc---chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 233333333 3345566677888999989999999999998765
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=390.19 Aligned_cols=371 Identities=58% Similarity=0.965 Sum_probs=308.8
Q ss_pred cccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC
Q psy13354 9 SKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA 88 (1342)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~ 88 (1342)
...||.+.+.+.++.+|+++.|.|.++||+++|.+++++...+.++|.+|+++.++|+++...+++|..+.++++++||+
T Consensus 2 ~~~d~ei~~li~~e~~rq~~~l~LiaSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~ 81 (399)
T PF00464_consen 2 KEFDPEIYELIEKEEERQRSTLNLIASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGA 81 (399)
T ss_dssp HHHTHHHHHHHHHHHHHHHHSEE-CTT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-
T ss_pred cccCHHHHHHHHHHHHHHhcCccccCcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhh-----CCceeEEEEecCC-CCCCCCHHHH
Q psy13354 89 E----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNM-----SGKWFNSICYGLN-KKEKIDYKKV 158 (1342)
Q Consensus 89 ~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~-----~g~~~~~v~~~~~-~~~~id~e~L 158 (1342)
+ ++.+.+.||+.|+.+++.++++|||+|+..+..+++|++++..... .|..++.++++++ +++.+|++++
T Consensus 82 ~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l 161 (399)
T PF00464_consen 82 EPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDEL 161 (399)
T ss_dssp STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHH
T ss_pred CcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHH
Confidence 9 9999999999999999999999999999999999999998876665 6677788988988 7799999999
Q ss_pred HHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeE
Q psy13354 159 EYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGF 238 (1342)
Q Consensus 159 e~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~ 238 (1342)
++.+.+.+|++|+++.++++...|++++.++|++.|++|++|.+|..|.+.++.+++|++.+|++++|.||+|.||.||+
T Consensus 162 ~~~a~~~kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrggi 241 (399)
T PF00464_consen 162 EKLAKEHKPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRGGI 241 (399)
T ss_dssp HHHHHHH--SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS-EE
T ss_pred HHHHhhcCCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeeccccccccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe--------------chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCc
Q psy13354 239 ILMK--------------KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304 (1342)
Q Consensus 239 iv~~--------------~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~ 304 (1342)
|+++ +++.+.+....+++..+++.....+|.+.++.+.....++++.+++.+|++.|.+.|.+.|+
T Consensus 242 I~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~ 321 (399)
T PF00464_consen 242 ILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGF 321 (399)
T ss_dssp EEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred EEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9999 68999999989999999999999999999999988778899999999999999999999999
Q ss_pred EEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 305 RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 305 ~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
+++.+.+++|.+|+++...+.+...+...|++.||.+.....|+. ..++..+++|+|+.+.|++++.++++..++
T Consensus 322 ~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d-~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA 396 (399)
T PF00464_consen 322 KVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGD-RSPFVPSGLRLGTPALTRRGMKEEDMKEIA 396 (399)
T ss_dssp EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTT-STTTT-SEEEEESHHHHHTT--HHHHHHHH
T ss_pred EEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCC-CCCCCCCEEEECCHHHHhCCCCHHHHHHHH
Confidence 999988999999999988777888899999999999999888887 344556789999999999999999987765
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=398.01 Aligned_cols=330 Identities=37% Similarity=0.634 Sum_probs=302.9
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
+|++||||++|++++||+++++.|.+++.+++++|+|||+||||+|||++|+++++.++|.. ..+..||+.|.+|
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~-----~~~~~pc~~c~~c 77 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCEN-----RKGVEPCNECRAC 77 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcccc-----CCCCCCCcccHHH
Confidence 68999999999999999999999999999999999999999999999999999999999864 3456899999999
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCC
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEP 539 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~ 539 (1342)
..+..+.++++.++++++..++++++++.+.+...|++++++||||||+|+|+.+.++.|++++++|++++++|++++.+
T Consensus 78 ~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~ 157 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNL 157 (472)
T ss_pred HHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCCh
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHH
Q psy13354 540 QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619 (1342)
Q Consensus 540 ~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~ 619 (1342)
.++.++|+|||.+++|.+++.+++..|++++++.+|+.++++++++|++.++||+|.++++|+++..++++.||.++|++
T Consensus 158 ~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~ 237 (472)
T PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHE 237 (472)
T ss_pred HhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999888777799999999
Q ss_pred HhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcC
Q psy13354 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKF 699 (1342)
Q Consensus 620 ~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~ 699 (1342)
+++...++.+|++++++..+|...|+.++++|+..|++|..++..|.......+ +..+
T Consensus 238 ~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi--------~~a~-------------- 295 (472)
T PRK14962 238 ALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDL--------ERER-------------- 295 (472)
T ss_pred HHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc--------cCCC--------------
Confidence 999999999999999999999999999999999999999999888777654422 1111
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 700 NIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 700 s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
..++..+...+.++-..++..-.+....|+.++++|.
T Consensus 296 -~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~~~~~~~~ 332 (472)
T PRK14962 296 -ANDIIQVSRQLLNILREIKFAEEKRLVCKLGSASIAT 332 (472)
T ss_pred -chHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Confidence 2345556777777788888887888899999988875
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=386.98 Aligned_cols=374 Identities=45% Similarity=0.723 Sum_probs=343.3
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
..+...||.+.+.+.++..|+.+.|.|.++||++++.+++++...+.++|.+|+++.+||+++...+++|..+.++..++
T Consensus 127 ~~l~~~Dpei~~li~~E~~rQ~~~l~LIASEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~l 206 (586)
T PLN02271 127 QPLPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAA 206 (586)
T ss_pred ccHhhhCHHHHHHHHHHHHHHhcCeeeccccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHH
Confidence 35777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCC----ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH------HhhhCCceeEEEEecCC-CCCCCC
Q psy13354 86 FNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM------MLNMSGKWFNSICYGLN-KKEKID 154 (1342)
Q Consensus 86 ~g~~~----~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~------~~~~~g~~~~~v~~~~~-~~~~id 154 (1342)
||+++ +.+.+.||+.|+.+++.++++|||+|+..+.++++|.+++. .+...|..++.++++++ +++.+|
T Consensus 207 F~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~ID 286 (586)
T PLN02271 207 FGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYID 286 (586)
T ss_pred hCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccC
Confidence 99775 77888899999999999999999999999999999999863 34667888899988886 678999
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCC
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp 234 (1342)
++++++.+...+|++|+++.+.++...|+++|+++|+++|+++++|.+|..|.+..+.+++++..+|++++|.||||.||
T Consensus 287 yd~lek~a~~~rPKLII~g~Saypr~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGP 366 (586)
T PLN02271 287 YDKLEEKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGP 366 (586)
T ss_pred HHHHHHHhhhcCCeEEEECchhccCcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCC
Confidence 99999977778999999999999988999999999999999999999999999999988889888999999999999999
Q ss_pred CeeEEEEech--------------------hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q psy13354 235 RGGFILMKKK--------------------YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKI 294 (1342)
Q Consensus 235 ~GG~iv~~~~--------------------l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~ 294 (1342)
.||+|+.+++ +.+.+....+|...+++.+...+|++.++.+.....+++|.+++.+|++.
T Consensus 367 rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAka 446 (586)
T PLN02271 367 RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQA 446 (586)
T ss_pred CceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 9999998763 56777777788888999898999999999998877889999999999999
Q ss_pred HHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchh
Q psy13354 295 LSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSEL 374 (1342)
Q Consensus 295 l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~ 374 (1342)
|.+.|.+.|++++.+++++|.+++++...+.+...+...|++.||.+....+|+. ..++.++++|+|+.+.|++++.++
T Consensus 447 LA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d-~~~~~psGiRiGT~alT~rG~~e~ 525 (586)
T PLN02271 447 LASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGD-NGTISPGGVRIGTPAMTSRGCLES 525 (586)
T ss_pred HHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCC-CCCCCCCcccccCHHHHhcCCCcH
Confidence 9999999999999999999999999988877889999999999999999888876 456667899999999999999999
Q ss_pred hHHHHH
Q psy13354 375 EIIKVV 380 (1342)
Q Consensus 375 d~~~~~ 380 (1342)
|+..++
T Consensus 526 d~~~iA 531 (586)
T PLN02271 526 DFETIA 531 (586)
T ss_pred HHHHHH
Confidence 986654
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=388.11 Aligned_cols=374 Identities=47% Similarity=0.806 Sum_probs=336.5
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
+.+...||.+.+.+..+.+|+++.|.|.+++|+++|.+++++...+.++|.+|+++.+||+++...+++|..+.++..++
T Consensus 28 ~~l~~~d~~~~~~~~~e~~rq~~~l~LiasEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~l 107 (493)
T PRK13580 28 DVILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKEL 107 (493)
T ss_pred HHHHhhCHHHHHHHHHHHHHHhcCceEecccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHH
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceEecCCHHHHHHHHHHHccCC-------------------------------CCEEEEeeccCCccchhhHHhh
Q psy13354 86 FNAEAANVQPHSGSQANQAVFFSVLNP-------------------------------GDTIMGMSLQEGGHLTHGMMLN 134 (1342)
Q Consensus 86 ~g~~~~vi~~~sGs~A~~~al~al~~p-------------------------------GD~Vlv~~~~~~~~~s~~~~~~ 134 (1342)
||++++.+.+.||+.|+.+++.+++.| ||+|+..+..+++|++++....
T Consensus 108 f~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n 187 (493)
T PRK13580 108 FGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPN 187 (493)
T ss_pred hCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccc
Confidence 999999999999999999999999976 8999999999999999886666
Q ss_pred hCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC
Q psy13354 135 MSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY 213 (1342)
Q Consensus 135 ~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~ 213 (1342)
..+..+..++++++ +++.+|++++++.+++++|.+++.+.++++...|+++|+++|++||+++++|+||++|.++.+..
T Consensus 188 ~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~ 267 (493)
T PRK13580 188 ISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVF 267 (493)
T ss_pred hhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEECchhhceeccccc
Confidence 77777788888887 56889999999999999999999999999988899999999999999999999999999875543
Q ss_pred C---CCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHH
Q psy13354 214 P---NPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVK 290 (1342)
Q Consensus 214 ~---~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~ 290 (1342)
. ++...+||+++|+||+|.||.||++++++++.+.+... .++.++++.+|..+|++.++.+.....++++++++.+
T Consensus 268 ~~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~~~l~~~L~~a-~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~ 346 (493)
T PRK13580 268 TGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKKEYADAVDKG-CPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVD 346 (493)
T ss_pred hhhcCCCCCCcEEEeCChhhccCCCeEEEEecHHHHHHHhhC-CCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 3 45567899999999999899999999999999998654 5889999999999988888888876566788999999
Q ss_pred HHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 291 NAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 291 ~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
|+++|++.|.+.|+++..+++.+|++++++++...+...+.+.|++.||++.+..+|.++.+++..++||+++++.++++
T Consensus 347 Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg 426 (493)
T PRK13580 347 NARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLG 426 (493)
T ss_pred HHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcC
Confidence 99999999999999987655778999999987655556777788888999999999999987777889999999999999
Q ss_pred cchhhHHHHH
Q psy13354 371 FSELEIIKVV 380 (1342)
Q Consensus 371 ~~e~d~~~~~ 380 (1342)
++++|+..++
T Consensus 427 ~teedi~~ia 436 (493)
T PRK13580 427 MGSDEMDEVA 436 (493)
T ss_pred CCHHHHHHHH
Confidence 9998876544
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=343.47 Aligned_cols=319 Identities=29% Similarity=0.399 Sum_probs=266.3
Q ss_pred cccccccccCCCcCchhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCee
Q psy13354 745 LDYNNLKNSKDTKGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLY 824 (1342)
Q Consensus 745 ~~~~~~~~~~~~~g~~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~ 824 (1342)
++|+|+.+ .+...+.++-|..|+..||.++-.+||++.+ ||-.++ -+||+.|++.+++.+++||+|+
T Consensus 51 LVCSNSlr-~~~~~navGlLk~EMR~lgSlii~~Ad~~~V----------PAGgAL--AVDR~~Fs~~vT~~l~~hpli~ 117 (439)
T COG1206 51 LVCSNSLR-SDALTNAVGLLKAEMRLLGSLIIEAADKHRV----------PAGGAL--AVDRDGFSQAVTEKLENHPLIE 117 (439)
T ss_pred heeccccc-cchhhhhhHHHHHHHHHhhhHHhhhhhhccC----------CCCcee--eecHhHHHHHHHHHHhcCCCEE
Confidence 57888876 4477789999999999999999999999988 999999 8999999999999999999999
Q ss_pred EEecccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHH-cCCCccccc
Q psy13354 825 LFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKE-LQLSHGRLK 903 (1342)
Q Consensus 825 i~~~~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~-~g~~~~~~~ 903 (1342)
|+.++|++|-- + +.+||||| +..|+.|+..|++ .|-....|+
T Consensus 118 vireEvt~iP~-----------d------g~~vIATG--------------------PLTs~~La~~i~~ltG~d~l~Fy 160 (439)
T COG1206 118 VIREEVTEIPP-----------D------GITVIATG--------------------PLTSDALAEKIKELTGEDYLYFY 160 (439)
T ss_pred EEccccccCCC-----------C------CcEEEecC--------------------CCCCHHHHHHHHHhhCCceEEee
Confidence 99999888731 1 45799999 8899999999999 599999999
Q ss_pred cCCCcccccCccccccceeec-CCCCCCCcccccCCCCCCCCccccchhhcc--hhHHHHHHh------hcccCCCCcc-
Q psy13354 904 TGTPPRIDKRTIDFSKMEEQI-GDFDPVPVFSVLGNINLHPKQLSCFITHTN--EKTHNIIRS------EFKNSPIFSG- 973 (1342)
Q Consensus 904 ~~~~~r~~~~si~~~~~~~~~-~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~--~~~~~~i~~------~~~~~p~~~~- 973 (1342)
+...|+|+.+|||+++...+. .|+ | ..++++|.||+.. .....++.. ..+..+.|.|
T Consensus 161 DAaAPIi~~dSIdmd~~~~~sRYdK---------g----~a~YiNCPmtkEey~~F~eaL~~ae~~~~k~fEk~~~FegC 227 (439)
T COG1206 161 DAAAPIIEFDSIDMDKAYLKSRYDK---------G----EADYINCPMTKEEYLAFYEALIEAEKAPLKDFEKEKYFEGC 227 (439)
T ss_pred cccCceeeccccchHHHHhhhcccc---------c----cchhhcCCCCHHHHHHHHHHHHhcccCChhhhccccccccc
Confidence 999999999999999988865 331 1 1247999999863 233344432 2222333322
Q ss_pred ----cccccc---CCCCCCccccc--cc--CCCCCccceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEE
Q psy13354 974 ----KIESIG---PRYCPSIEDKV--YR--FPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANI 1042 (1342)
Q Consensus 974 ----~~~~~g---~r~~~s~~~k~--~~--~~~~~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i 1042 (1342)
.+..+| .||.|--.--+ -+ ...+++..++|+++......+++.||+|.|.|.+|++++++|||||||+|
T Consensus 228 mPIE~mA~rG~~Tl~~GPmKPvGL~~p~~~tgk~pYAVVQLRqdna~GtLynmVGFQT~LkwgeQkrVf~mIPgLeNAef 307 (439)
T COG1206 228 MPIEVMAERGRKTLRFGPMKPVGLEDPRDPTGKRPYAVVQLRQDNAAGTLYNMVGFQTHLKWGEQKRVFRMIPGLENAEF 307 (439)
T ss_pred CcHHHHHhhCcchhccCCCCCcCCCCCCCCCCCCceEEEEeeccccccceeeeeeeeeccchhhhhhhhhhcCCcchhhh
Confidence 122222 45666322111 12 12226899999999999999999999999999999999999999999999
Q ss_pred ecceeEEEeeeeC-ccCccccccccCcCCeeecccccCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhh
Q psy13354 1043 IRPGYAIEYDYFN-PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVD 1121 (1342)
Q Consensus 1043 ~~~g~~v~~~~i~-p~~l~~tlesk~~~gL~~aGqi~g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~id 1121 (1342)
+|+|+.++++||| |+-|++|++.|.-++|||||||.|+.||.|++|+|++||+|||+.++|++|++++.+.+ ||-|.+
T Consensus 308 vRyGvmHRNtfinSP~lL~~tl~lk~~p~l~fAGQitG~EGYveSaA~Gllag~naa~~~~g~~~~~~P~tT~-~Gal~~ 386 (439)
T COG1206 308 VRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVEGYVESAASGLLAGINAARLALGEEPLIPPPTTA-LGALVN 386 (439)
T ss_pred hhccceecccccCChhhhhHHhhcccCCCcEEeeeeecchhhhHHhhhhHHHhhHHHHHhcCCCCCCCCchhH-HHHHHH
Confidence 9999999999999 88899999999999999999999999999999999999999999999999999999988 999999
Q ss_pred hhhhcC
Q psy13354 1122 DLITKG 1127 (1342)
Q Consensus 1122 dl~~~~ 1127 (1342)
=+++.|
T Consensus 387 yIt~~~ 392 (439)
T COG1206 387 YITGAG 392 (439)
T ss_pred HHhcCC
Confidence 888773
|
|
| >KOG2467|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=328.91 Aligned_cols=376 Identities=51% Similarity=0.835 Sum_probs=344.3
Q ss_pred ccccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHH
Q psy13354 4 KNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLK 83 (1342)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la 83 (1342)
.++.+...||.+.+.+.++..|+.+.|.|.++|||.+.+|++|+...+.|+|.+|+|+.+||++++..+++|...+++.-
T Consensus 17 ~~~~l~~~DPev~~ii~~Ek~RQ~~gieLIaSENFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RAL 96 (477)
T KOG2467|consen 17 GNTPLEEVDPEVHDIIEKEKERQKRGIELIASENFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRAL 96 (477)
T ss_pred hcCchhhcChHHHHHHHHHHHhhhcceeEeecccchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCC-----ceeEEEEecCC-CCCCC
Q psy13354 84 KIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSG-----KWFNSICYGLN-KKEKI 153 (1342)
Q Consensus 84 ~~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g-----~~~~~v~~~~~-~~~~i 153 (1342)
+.|+.+ .+.+.+.|||-||+++..+++.|+|.|.-.+.++++|++++..-.... +.++..|+.++ .+|-|
T Consensus 97 eaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~I 176 (477)
T KOG2467|consen 97 EAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYI 176 (477)
T ss_pred HHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCce
Confidence 999988 567888899999999999999999999999999999999876533332 34444555666 67899
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCC
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRG 233 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~g 233 (1342)
|+|.|+......+|+++|...+.|+..+|..++.++|++.|+++++|.||..|...++..++|++.+|||+.+.||++-|
T Consensus 177 DYD~Le~~A~~frPk~iiaG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsLRG 256 (477)
T KOG2467|consen 177 DYDKLEKTATLFRPKLIIAGTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSLRG 256 (477)
T ss_pred ehHHHHHHHHhcCCcEEEeccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEec---------------hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 234 PRGGFILMKK---------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 234 p~GG~iv~~~---------------~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
|.||.|+.++ ++.+.++...+|...|+|.+..+++++.|+++.....++.+.++..+|++.|.+.
T Consensus 257 PRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~ 336 (477)
T KOG2467|consen 257 PRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASA 336 (477)
T ss_pred CcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876 2455666667889999999999999999999999889999999999999999999
Q ss_pred HHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHH
Q psy13354 299 LDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIK 378 (1342)
Q Consensus 299 L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~ 378 (1342)
|.+.|++++++++++|.+.+++.+.+.+...++..++.-+|.+....+|+... ++.++++|++..+.|+++..++|+.+
T Consensus 337 l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~S-al~PgGiRiGtPAmTsRG~~e~df~~ 415 (477)
T KOG2467|consen 337 LISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKS-ALSPGGIRIGTPAMTSRGFGEEDFEK 415 (477)
T ss_pred HHHcCceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCcc-ccCCCceeccchhhcccCccHHHHHH
Confidence 99999999999999999999999999999999999999999999888898764 55678999999999999999999877
Q ss_pred HH
Q psy13354 379 VV 380 (1342)
Q Consensus 379 ~~ 380 (1342)
++
T Consensus 416 v~ 417 (477)
T KOG2467|consen 416 VA 417 (477)
T ss_pred HH
Confidence 65
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=353.28 Aligned_cols=374 Identities=49% Similarity=0.787 Sum_probs=315.3
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
..+...||.+.+.+.++..|+++.|.|.++||++++.+++++...+.++|..|++++++|+++..++++|+.+.++..+.
T Consensus 13 ~~~~~~d~~~~~~i~~e~~~q~~~l~liasen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~ 92 (475)
T PLN03226 13 APLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEA 92 (475)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHcCeeEecCCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHH
Confidence 45777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCc----eEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHh-----hhCCceeEEEEecCC-CCCCCCH
Q psy13354 86 FNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMML-----NMSGKWFNSICYGLN-KKEKIDY 155 (1342)
Q Consensus 86 ~g~~~~----vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~-----~~~g~~~~~v~~~~~-~~~~id~ 155 (1342)
|+.++. .+.+.||+.||..++.++++|||+|+..+...++|++++... ...+..+..+++.++ +++.+|+
T Consensus 93 f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~ 172 (475)
T PLN03226 93 FRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDY 172 (475)
T ss_pred hCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCH
Confidence 998853 334569999999999999999999999888888888876432 222333445556655 6788999
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCC
Q psy13354 156 KKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235 (1342)
Q Consensus 156 e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~ 235 (1342)
+++++++...+|++|+++.++++...|+++|.++|+++|+++++|+||.+|.++.+...++++.+|++++|+||||.||.
T Consensus 173 d~Le~~l~~~~pklIv~~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~ 252 (475)
T PLN03226 173 DKLEKKAMLFRPKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPR 252 (475)
T ss_pred HHHHHHHhhcCCeEEEEecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCC
Confidence 99999998778888888788888888999999999999999999999999998877766777789999999999999999
Q ss_pred eeEEEEechhH-----------H---HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Q psy13354 236 GGFILMKKKYK-----------K---IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ 301 (1342)
Q Consensus 236 GG~iv~~~~l~-----------~---~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~ 301 (1342)
||++++++++. + .++....+...++++.+..+++++++......+++.+.+++.++++++.+.|.+
T Consensus 253 Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~ 332 (475)
T PLN03226 253 GGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS 332 (475)
T ss_pred ceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987533 2 233333344456666777777788888777667888999999999999999999
Q ss_pred CCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 302 RGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 302 ~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
.|++++.++++++++++++...+.+...+...|++.||.+.....|+. ..++.++++|++++..+++++.++|+.+++
T Consensus 333 ~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~-~~~~~~~giRiGt~~lt~~g~~~~d~~~ia 410 (475)
T PLN03226 333 KGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGD-SSALVPGGVRIGTPAMTSRGLVEKDFEKVA 410 (475)
T ss_pred CCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCC-cccCCCCCcccCcHHHHHCCCCHHHHHHHH
Confidence 999998766678999999876666777888888899999998888865 345567789999999999999999886644
|
|
| >KOG0989|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=314.49 Aligned_cols=276 Identities=28% Similarity=0.409 Sum_probs=235.4
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
..|..||+|++|++++||+++++.|.+++..+.+| +||||||||||||++|++++++|+|++ ..||..|..
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp-~~LFyGPpGTGKTStalafar~L~~~~--------~~~~rvl~l 94 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILP-HYLFYGPPGTGKTSTALAFARALNCEQ--------LFPCRVLEL 94 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCc-eEEeeCCCCCcHhHHHHHHHHHhcCcc--------ccccchhhh
Confidence 34999999999999999999999999999995555 599999999999999999999999843 358999999
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHH--hhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQT--IYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~--~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
|.+.+.|.... ... +..+..+.... ........+||+|+||+|.|+.+++++|.+++|+++.+++|||+|
T Consensus 95 naSderGisvv-----r~K---ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 95 NASDERGISVV-----REK---IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILIC 166 (346)
T ss_pred cccccccccch-----hhh---hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEc
Confidence 98877775421 111 11222222111 112233456999999999999999999999999999999999999
Q ss_pred CCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHH
Q psy13354 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNS 616 (1342)
Q Consensus 537 ~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~ 616 (1342)
|..++++.+|.|||+.+.|++++++++.+.|+.++.++|+.++++++++|+..++||+|+|+..|+++.. .+++||...
T Consensus 167 nylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~-~gk~It~~~ 245 (346)
T KOG0989|consen 167 NYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSL-LGKRITTSL 245 (346)
T ss_pred CChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhc-cCcccchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877 567788554
Q ss_pred H-HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy13354 617 M-QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQI 672 (1342)
Q Consensus 617 V-~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l 672 (1342)
+ +++.+.+..+.+.++++...++|..+....++++...|.+|..++..|+..+...
T Consensus 246 ~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~ 302 (346)
T KOG0989|consen 246 VNEELAGVVPDEKLLDLLELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDI 302 (346)
T ss_pred HHHHHhccCCHHHHHHHHHHHHccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 4 4555599999999999999999999999999999999999999888777766443
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=338.95 Aligned_cols=380 Identities=59% Similarity=0.981 Sum_probs=305.4
Q ss_pred CccccccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHH
Q psy13354 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAIN 80 (1342)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~ 80 (1342)
|+..++.|+..||.+.+.+.++..++.+.|++++++||++|.+++++...+.++|+.|+++++++++++.+.++|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~ 81 (416)
T PRK13034 2 MFFFSDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIE 81 (416)
T ss_pred cchhhhhHhhhCHHHHHHHHHHHHHHhcCeeecccccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHH
Confidence 55667788999999999999999999999999999999999999999999878999999999999889999999998889
Q ss_pred HHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHH
Q psy13354 81 RLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVE 159 (1342)
Q Consensus 81 ~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le 159 (1342)
.+++++|.+++.++++||+.|+..++.++++|||+|++....++++...+..+...+..++.+.++++ .++.+|+++++
T Consensus 82 ~la~l~g~~~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 161 (416)
T PRK13034 82 RAKQLFGCDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVE 161 (416)
T ss_pred HHHHHhCCCceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHH
Confidence 99999999998777669999999999999999999998877776643332222222333333445554 35668999999
Q ss_pred HHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEE
Q psy13354 160 YLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFI 239 (1342)
Q Consensus 160 ~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~i 239 (1342)
+.+...++++|++..+.++...|+++|.++|++||++|++|++|++|.++.+....++..+|++++|+||+++|+.||++
T Consensus 162 ~~l~~~~~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~GG~v 241 (416)
T PRK13034 162 ELAKEHKPKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRGGMI 241 (416)
T ss_pred HHHhhcCCeEEEECCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCCeEE
Confidence 98876667888886677887789999999999999999999999999988777666666689999999999988999998
Q ss_pred EEechh-HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEE
Q psy13354 240 LMKKKY-KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILV 318 (1342)
Q Consensus 240 v~~~~l-~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i 318 (1342)
+++++. .+.++...++...+++..+..++++.++.+.......++++++.++++++++.|.+.|+++..+.+.++++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~~~t~i~~v 321 (416)
T PRK13034 242 LTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYDLVSGGTDNHLLLV 321 (416)
T ss_pred EECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCCEeccCCCCCcEEEE
Confidence 887654 4445544444434455566677777777777643455678999999999999999999988543357899999
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
.+.....+...+.+.|++.||++.+...|.....+..+.++|+|+++.++++++++|+..++
T Consensus 322 ~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~ 383 (416)
T PRK13034 322 DLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIA 383 (416)
T ss_pred EcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHH
Confidence 98877667777777777789999986666543333345679999999999999998886644
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=328.77 Aligned_cols=309 Identities=17% Similarity=0.204 Sum_probs=269.5
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
++|++||||++|++++||+++++.|...+..++.+| +||+||||+|||++|+++++++.|...
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~---------------- 63 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPN-LILSGPPGTGKTTSILALAHELLGPNY---------------- 63 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHhcccC----------------
Confidence 369999999999999999999999999999999887 799999999999999999999975320
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCc---cCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPI---NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~---~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
...+.++++++..+++.+++.+......+. .+.+++|+|||+|.|+..++++|++++|.++.++.||++
T Consensus 64 --------~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~ 135 (319)
T PLN03025 64 --------KEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALA 135 (319)
T ss_pred --------ccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEE
Confidence 124778888877888888888876544322 256899999999999999999999999999999999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHH
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e 615 (1342)
+|..+++.++|+|||..++|++++.+++..||.++++++|+.+++++++++++.++||+|.++++|+.+. .+.+.||.+
T Consensus 136 ~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~-~~~~~i~~~ 214 (319)
T PLN03025 136 CNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATH-SGFGFVNQE 214 (319)
T ss_pred eCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-hcCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998433 234579999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHH
Q psy13354 616 SMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQL 695 (1342)
Q Consensus 616 ~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~ 695 (1342)
+|.++++......+|++++++..++...|+..+.+|+..|++|..|+..|.+.++.. .
T Consensus 215 ~v~~~~~~~~~~~i~~~i~~~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~---~------------------- 272 (319)
T PLN03025 215 NVFKVCDQPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNY---D------------------- 272 (319)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---C-------------------
Confidence 999999999999999999999999999999999999999999999999995544211 0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
++...-..++..+++.|..+..|.++..-++-++.+++..
T Consensus 273 ---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~a~~~~~~~~ 312 (319)
T PLN03025 273 ---MPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLCLV 312 (319)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 1111123688899999999998888999999999988764
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=327.52 Aligned_cols=310 Identities=24% Similarity=0.342 Sum_probs=271.2
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|++||||.+|++++||+.+++.+..+++.+..++ ++|+||+|+|||++++.+++.+.+...
T Consensus 4 ~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~-~ll~G~~G~GKt~~~~~l~~~l~~~~~--------------- 67 (319)
T PRK00440 4 EEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALARELYGEDW--------------- 67 (319)
T ss_pred cCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCcc---------------
Confidence 3579999999999999999999999999999988876 699999999999999999999975321
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHH-HHHhhcCcc-CCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLL-EQTIYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii-~~~~~~p~~-~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
...+++++.+...+.+.+++.+ +.+...|++ +++++|+|||++.++.+..+.|+++++.+++++.+|++
T Consensus 68 ---------~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~ 138 (319)
T PRK00440 68 ---------RENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILS 138 (319)
T ss_pred ---------ccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEE
Confidence 1245666655545555554444 444556776 67899999999999998899999999999999999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHH
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e 615 (1342)
++.+.++.+++++||.+++|.+++.+++..|+..+++++|+.+++++++++++.++||+|.++++++++..+ ++.||.+
T Consensus 139 ~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~-~~~it~~ 217 (319)
T PRK00440 139 CNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAAT-GKEVTEE 217 (319)
T ss_pred eCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998776 4679999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHH
Q psy13354 616 SMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQ 694 (1342)
Q Consensus 616 ~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~-~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~ 694 (1342)
+|.++++...++++|++++++..++..+|+.++++|+. .|.++..|+..+...+
T Consensus 218 ~v~~~~~~~~~~~i~~l~~~~~~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~------------------------- 272 (319)
T PRK00440 218 AVYKITGTARPEEIREMIELALNGDFTEAREKLRDLMIDYGLSGEDIIKQIHREV------------------------- 272 (319)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-------------------------
Confidence 99999999999999999999999999999999999984 7888887766654210
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 695 LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 695 ~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
.+++|+.+.+.++++.+.++|+.+|++.|+++.||.|++++|.+
T Consensus 273 ~~~~~~~~~l~~~~~~~~~~d~~~k~g~~~~~~le~~i~~~~~~ 316 (319)
T PRK00440 273 WSLDIPEELKVELIDAIGEADFRITEGANERIQLEALLAKLALL 316 (319)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 03689999999999999999999998899999999999999865
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=325.11 Aligned_cols=308 Identities=22% Similarity=0.350 Sum_probs=272.6
Q ss_pred CCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCC
Q psy13354 388 SNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF 467 (1342)
Q Consensus 388 ~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 467 (1342)
.+|++++||+++++.|.++++.|+++|+|||+||+|+|||++|+.+++.+.|.. ..+.|
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~---------------------~~~~h 59 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKS---------------------QQREY 59 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCC---------------------CCCCC
Confidence 369999999999999999999999999999999999999999999999998742 12457
Q ss_pred ccEEEEcc--CCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHH
Q psy13354 468 MDYIEMDA--ASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPIT 545 (1342)
Q Consensus 468 ~d~~~i~~--~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~ 545 (1342)
+|+..+.. ....++++++++++.+...|+++++||+|||++|.++.++.|+|+++||+||++++||++|+++++++++
T Consensus 60 ~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 60 VDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDT 139 (313)
T ss_pred CCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 88877765 2345678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCc
Q psy13354 546 VLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIID 625 (1342)
Q Consensus 546 L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~ 625 (1342)
|+|||+.++|.+++++++..|+.+.+. .+++++++.++..++|++..+..++.... ....
T Consensus 140 I~SRc~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~----------------~~~~ 199 (313)
T PRK05564 140 IKSRCQIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDS----------------LKNI 199 (313)
T ss_pred HHhhceeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccH----------------HHHH
Confidence 999999999999999999999976543 47788899999999999998876642211 0112
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhC-cccccCCchhHHHHHHHHhcCCHHHH
Q psy13354 626 QKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQIS-PEILIKDSPNYNEIIQLSKKFNIEQI 704 (1342)
Q Consensus 626 ~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~-~~~~~~~~~~~~~~~~~a~~~s~~~L 704 (1342)
++.+|++++++..++...++.+++.+...++++..++.+|.++||+++.+|.. ......+++..+.+.+++++||.+.|
T Consensus 200 ~~~~~~~~~~l~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~a~~~s~~~L 279 (313)
T PRK05564 200 RNMSLEILKDIKKSNINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHISEKFSYKKL 279 (313)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHHHHHHhhCCHHHH
Confidence 45789999999999999999999999999999999999999999999999974 33355677788889999999999999
Q ss_pred HHHHHHHHHHHHhhccCCChhHHHHHHHHHhH
Q psy13354 705 QLFYQISIHGRNELELAPDEYAGFTMTLLRML 736 (1342)
Q Consensus 705 ~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~ 736 (1342)
.++++.+.++++.+|++.|+.+.+|.+++++.
T Consensus 280 ~~~~~~l~~~~~~l~~n~n~~l~le~lll~~~ 311 (313)
T PRK05564 280 NKMIEIINDTRDNLSSNVNPTLVFDSMLIKMQ 311 (313)
T ss_pred HHHHHHHHHHHHHHHHcCCccHHHHHHHHhhh
Confidence 99999999999999999999999999999874
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=320.96 Aligned_cols=338 Identities=22% Similarity=0.337 Sum_probs=278.4
Q ss_pred CccccccchhhHHHHHHHHHcCC---------CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 389 NFNTLIGQNHISKSLINALDKKR---------LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~---------~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
.|++++||+++++.|.+++..++ ++|+|||+||+|+|||++|+.+|+.++|.... ..+|+.|++|
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~------~~~Cg~C~~C 76 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD------EPGCGECRAC 76 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC------CCCCCCCHHH
Confidence 68999999999999999999887 89999999999999999999999999996432 3689999999
Q ss_pred hhhccCCCccEEEEccC-CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC
Q psy13354 460 VKIDNGCFMDYIEMDAA-STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE 538 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~-~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~ 538 (1342)
..+..+.|||+..+... ...++++++++++.+...|..+++||+||||+|.|+....|+|+++||+||++++||++|++
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 99999999999887654 44678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHH---------HHhhc-
Q psy13354 539 PQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQ---------AINYS- 608 (1342)
Q Consensus 539 ~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~k---------l~~~~- 608 (1342)
++.+.++|+|||+.+.|++|+.+++.+||.+ +.+ ++++++..++..++|+++.++..++. ++...
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~~~~~~~~~r~~~~~~l~ 231 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLATDEEARARRAEVLNLAL 231 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999873 224 67888999999999999988766432 11110
Q ss_pred --CCC------------CCHHHHHHHhccCcHHHHHHHHHHHHccCh-----------HHHHHHHHHHHH------cCCC
Q psy13354 609 --SEK------------ITLNSMQEMLSIIDQKYLIQILDALAEQDG-----------NLILSIANKIEI------YNLS 657 (1342)
Q Consensus 609 --~~~------------It~e~V~~~v~~~~~~~if~l~dal~~~~~-----------~~al~~l~~L~~------~~~~ 657 (1342)
... ...+.+...++...+....++.+.+..++. ..+++.+.+... ..+.
T Consensus 232 ~l~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (394)
T PRK07940 232 RLARVSDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGPAKALRGAAGALKDLEKRQKRRATRASRDA 311 (394)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHhhhchhhhhhh
Confidence 000 011234455566666677777777644322 223333333222 1244
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 658 YSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 658 ~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
...++..|..++|+++.++...+....+.+....+.+.+.+++...|..+++.+.++...++.+.++++.+|.+++++..
T Consensus 312 l~~~l~~l~~~~rDll~~~~g~~~~~~n~d~~~~l~~~a~~~~~~~l~~~~~~~~~a~~~l~~n~n~~L~lE~lll~l~~ 391 (394)
T PRK07940 312 LDRALVDLAGLYRDVLVVQLGAEVGLINPDMADRLAELAARSTPEGLLRRIDAVLACRERLAGNVKPLLAVEAMVAALRQ 391 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 56789999999999999998766556677777788999999999999999999999999999999999999999999864
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=329.23 Aligned_cols=375 Identities=51% Similarity=0.817 Sum_probs=303.6
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
++.++..||.+.+.+..+..++++.|+|.+++|++||.+++++...+.+.|..|+++++++.+....+.+++.+++.+++
T Consensus 12 ~~~~~~~d~~~~~~~~~~~~~~~~~l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~ 91 (452)
T PTZ00094 12 NQSLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALE 91 (452)
T ss_pred hhhHhhhCHHHHHHHHHHHHHHHcCeeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHH
Confidence 45588889999999999988889999999999999999999999999999999999999999999999999889999999
Q ss_pred HhCCCC-ceEec---CCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhh-----hCCceeEEEEecCCCCCCCCH
Q psy13354 85 IFNAEA-ANVQP---HSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLN-----MSGKWFNSICYGLNKKEKIDY 155 (1342)
Q Consensus 85 ~~g~~~-~vi~~---~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~-----~~g~~~~~v~~~~~~~~~id~ 155 (1342)
++|++. .+.++ .||++|+..++.+++++||+|++...+++++.+.+.... ..+..+..++++++.+|.+|+
T Consensus 92 lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~ 171 (452)
T PTZ00094 92 AFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDY 171 (452)
T ss_pred HhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCH
Confidence 999873 22222 589999999999999999999999999999887653321 223445666667776799999
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCC
Q psy13354 156 KKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235 (1342)
Q Consensus 156 e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~ 235 (1342)
+++++.+++.++++++++.++++...|+++|.++|+++|+++++|++|++|.+..+....++..+|++++|+||||+||.
T Consensus 172 ~~L~~~l~~~~~~lvi~~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~ 251 (452)
T PTZ00094 172 DKLEELAKAFRPKLIIAGASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPR 251 (452)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCC
Confidence 99999998767888777677787888999999999999999999999999998766555555578999999999999999
Q ss_pred eeEEEEechhHHH----HhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC
Q psy13354 236 GGFILMKKKYKKI----INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT 311 (1342)
Q Consensus 236 GG~iv~~~~l~~~----l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~ 311 (1342)
||++++++++.+. +.....+...|+++....++++.++........+++.+++.++++++.+.|.+.|+++..+..
T Consensus 252 Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~ 331 (452)
T PTZ00094 252 SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGT 331 (452)
T ss_pred ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCC
Confidence 9999988755433 222334444566767777777777777655577788999999999999999888998865433
Q ss_pred CCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 312 KSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 312 ~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
..+.+++.+...+.+.+.+..+|+++||.+.....|..+ .+..++++|+|++..++++++++|+..++
T Consensus 332 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~-~~~~~~~vRis~~~~tt~g~~~~di~~l~ 399 (452)
T PTZ00094 332 DNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDK-SALNPSGVRLGTPALTTRGAKEKDFKFVA 399 (452)
T ss_pred CCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCC-cCCCCCeEEECCHHHHhCCCCHHHHHHHH
Confidence 456777777766666777888888889999865555542 22335789999999999999998876543
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-32 Score=313.62 Aligned_cols=320 Identities=25% Similarity=0.378 Sum_probs=267.3
Q ss_pred Ccccccc-chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCC
Q psy13354 389 NFNTLIG-QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF 467 (1342)
Q Consensus 389 ~f~~lvG-q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 467 (1342)
.|+.++| |+++++.|.+.+..|+++|+|||+||+|+||+++|+.+++.+.|..+. ...+|+.|++|..+..+.|
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~-----~~~~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERN-----GVEPCGTCTNCKRIDSGNH 77 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCC-----CCCCCCcCHHHHHHhcCCC
Confidence 5788999 999999999999999999999999999999999999999999997532 2358999999999999999
Q ss_pred ccEEEEccC-CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHH
Q psy13354 468 MDYIEMDAA-STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITV 546 (1342)
Q Consensus 468 ~d~~~i~~~-~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L 546 (1342)
+|+..+... ...++++++++++.+...|+++++||+||||+|.++.+++|+|+++||+||++++||++|+++.+++++|
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 999887654 3356789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcH
Q psy13354 547 LSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQ 626 (1342)
Q Consensus 547 ~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~ 626 (1342)
+|||++++|.+++.+++.+|+. ++| ++++...+++..+ |+++.+...++.-.. .. ..
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~~-g~~~~A~~l~~~~~~--------~~--------~~ 214 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGLT-NSVEEALALSEDDWF--------AQ--------AR 214 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHHc-CCHHHHHHHhcCchH--------HH--------HH
Confidence 9999999999999999988885 345 5677777777664 789988877643110 00 12
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHH
Q psy13354 627 KYLIQILDALAEQDGNLILSIANKIEIY---NLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQ 703 (1342)
Q Consensus 627 ~~if~l~dal~~~~~~~al~~l~~L~~~---~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~ 703 (1342)
..+..+.+.+..++....+.+...+... .+....++..+...+|+++.++........+.+....+.+.++++|.++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~~~a~~~s~~~ 294 (329)
T PRK08058 215 ALVIKLYEALHEKDLQSFVFVQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQQLALSYSQQQ 294 (329)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCHHH
Confidence 2345666666666665555554444432 2223456888999999999988865555566777778899999999999
Q ss_pred HHHHHHHHHHHHHhhccCCChhHHHHHHHHHhH
Q psy13354 704 IQLFYQISIHGRNELELAPDEYAGFTMTLLRML 736 (1342)
Q Consensus 704 L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~ 736 (1342)
|..+++.+.++.+.+++..++.+.+|.+++++.
T Consensus 295 l~~~~~~~~~~~~~l~~n~n~~L~le~lll~~~ 327 (329)
T PRK08058 295 IVAALELILEAKRRLNSNVNFQLVMEQLVLRLQ 327 (329)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 999999999999999999999999999999874
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=315.96 Aligned_cols=326 Identities=23% Similarity=0.321 Sum_probs=264.8
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC-CCc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG-KCS 457 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~-~~~ 457 (1342)
..|..||+|++|++++||+.+++.|.+++..+..+| ++|+||+|+|||++|+++++.+.+..... .....+|. .|.
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~-lll~Gp~GtGKT~la~~~~~~l~~~~~~~--~~~~i~~~~~~~ 79 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARELYGDPWEN--NFTEFNVADFFD 79 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCce-EEEECCCCCCHHHHHHHHHHHhcCccccc--ceEEechhhhhh
Confidence 369999999999999999999999999999988776 79999999999999999999998643111 11111111 111
Q ss_pred chhhhccCCCccEEEE---c-cCCCcCHHHHHHHHHH-HhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEE
Q psy13354 458 VCVKIDNGCFMDYIEM---D-AASTRGINEMAQLLEQ-TIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKF 532 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i---~-~~~~~~~~~i~~ii~~-~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vl 532 (1342)
.+.... ..++++..+ + .......+.+++++.. ....|+++++++|||||++.++.+.++.|.++++++++.+.+
T Consensus 80 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~ 158 (337)
T PRK12402 80 QGKKYL-VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRF 158 (337)
T ss_pred cchhhh-hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeE
Confidence 110000 011222111 0 0112234566666644 455688888999999999999998899999999998888999
Q ss_pred EEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCC
Q psy13354 533 ILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKI 612 (1342)
Q Consensus 533 Il~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~I 612 (1342)
|++++.+.++.++|++||..++|.+++.+++..|+.++++++|+.+++++++.|++.++||+|.+++.++++. ...+.|
T Consensus 159 Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~-~~~~~I 237 (337)
T PRK12402 159 IIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA-LAAGEI 237 (337)
T ss_pred EEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-HcCCCC
Confidence 9999988899999999999999999999999999999999999999999999999999999999999999866 334579
Q ss_pred CHHHHHHHhcc-CcHHHHHHHHHHHHccChHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHH
Q psy13354 613 TLNSMQEMLSI-IDQKYLIQILDALAEQDGNLILSIANKIE-IYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYN 690 (1342)
Q Consensus 613 t~e~V~~~v~~-~~~~~if~l~dal~~~~~~~al~~l~~L~-~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~ 690 (1342)
|.++|++++.. ..+.++|++++++..++..+|+.++++|+ ..|.++..|+..|...
T Consensus 238 t~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~---------------------- 295 (337)
T PRK12402 238 TMEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRV---------------------- 295 (337)
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH----------------------
Confidence 99999999997 55889999999999999999999999987 6888888777777430
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHh
Q psy13354 691 EIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRM 735 (1342)
Q Consensus 691 ~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l 735 (1342)
.+++ ||.+.+.+++..|.++|+.+|++.++++.+|.++.++
T Consensus 296 ---~~~~-~~~~~l~~~~~~l~~~d~~lk~g~~~~~~le~~i~~~ 336 (337)
T PRK12402 296 ---ARSR-YRGDNLARLHRLAADADARLTDGANDRIQLEALLAEL 336 (337)
T ss_pred ---HHHH-CCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 1223 9999999999999999999998899999999999875
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=320.85 Aligned_cols=369 Identities=62% Similarity=1.003 Sum_probs=294.8
Q ss_pred cchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC
Q psy13354 11 IDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA 90 (1342)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~ 90 (1342)
.|+.++..+.++...+++.|.+.+++++++|.+++++...+..+|..+.+++++|.+......+++.+++.+++++|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~ 82 (402)
T cd00378 3 VDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEY 82 (402)
T ss_pred cCHHHHHHHHHHHHHHHhCeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCc
Confidence 57888999998877778899999999999999999999887678888888888898888889999988899999999987
Q ss_pred ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH--hhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCC
Q psy13354 91 ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM--LNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKP 167 (1342)
Q Consensus 91 ~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~--~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~ 167 (1342)
..++++||++|+..++.++++|||+|++.++.++++...+.. +...|..+..++++.+. ++.+|++++++.+.+.++
T Consensus 83 ~~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~ 162 (402)
T cd00378 83 ANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKP 162 (402)
T ss_pred eeeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCC
Confidence 656555899999999999999999999988888877665432 45556655566555552 688999999999976678
Q ss_pred eEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEec-hhH
Q psy13354 168 KLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK-KYK 246 (1342)
Q Consensus 168 ~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~-~l~ 246 (1342)
+++++++++++...++++|+++|++||++||+|++|..|..+.+....++..+|++++|+||+|+|+.||++++++ +++
T Consensus 163 ~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~gg~i~~~~~~~~ 242 (402)
T cd00378 163 KLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTRKGELA 242 (402)
T ss_pred CEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCceEEEeccHHHH
Confidence 8888877788877799999999999999999999997776654443333445699999999999889999999987 888
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCC
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKIT 326 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~ 326 (1342)
+.+.....++..+++..+..+++..++......+.+++++++.++++++.+.|.+.|+.+...+.+++++|++++....+
T Consensus 243 ~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~v~v~~~~~~~~ 322 (402)
T cd00378 243 KKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGGTDNHLVLVDLRPKGIT 322 (402)
T ss_pred HHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEeecCCCCeEEEEeCCccCCC
Confidence 88876555555666555566665666655544356778889999999999999999998765456789999999754445
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
...+..+++++||.+.+..+|....+++...++|++++..++.+++++|+..+
T Consensus 323 ~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~ 375 (402)
T cd00378 323 GKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEI 375 (402)
T ss_pred HHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHH
Confidence 56666778888999998777776432334568999999998888888876543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=321.05 Aligned_cols=375 Identities=64% Similarity=1.031 Sum_probs=293.1
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
.+.+++.||.+.+.+.++..++++.+.|++++|++++.+++++...+.+.|..+++++.++.+......+++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~ 82 (416)
T PRK00011 3 MDNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKE 82 (416)
T ss_pred chhhhhcCHHHHHHHHHHHHHHhcCeeeecccCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHH
Confidence 35788999999999999888889999999999999999999998887667777888888877777788888888899999
Q ss_pred HhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHH
Q psy13354 85 IFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAK 163 (1342)
Q Consensus 85 ~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~ 163 (1342)
++|.+...++.++|++|+..++.++++|||+|+++.+.++++++.+......+.+.+++.++.+ +++.+|+++++++++
T Consensus 83 ~~g~~~~~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~ 162 (416)
T PRK00011 83 LFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLAL 162 (416)
T ss_pred HhCCCceeeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHH
Confidence 9999876454448999999999999999999999888887765544333333334466666666 458899999999998
Q ss_pred hcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEe-
Q psy13354 164 KNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK- 242 (1342)
Q Consensus 164 ~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~- 242 (1342)
+.++++++++.++++...|+++|.++|++||+++|+|++|+.|..+.+..+..+..+|++++|+||+++|+.||+++++
T Consensus 163 ~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~~gg~i~~~~ 242 (416)
T PRK00011 163 EHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILTND 242 (416)
T ss_pred hcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCCCceEEEeCC
Confidence 6667888887777776679999999999999999999999887665443343444679999999999988999999996
Q ss_pred chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC
Q psy13354 243 KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 243 ~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~ 322 (1342)
+++.+.++....++..+++..+..+++..++...+.++++++.+++.++++++.+.|.+.|+++...+..++++|+.+++
T Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~ 322 (416)
T PRK00011 243 EELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVVSGGTDNHLVLVDLRS 322 (416)
T ss_pred HHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeeeecCCCCeEEEEeCcc
Confidence 58888887666666666665666677666776666556788899999999999999999998875433446889999865
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
...+.+.+...|+++||.+.....|.....++.+.++|++....++.+++++++..+
T Consensus 323 ~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l 379 (416)
T PRK00011 323 KGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEI 379 (416)
T ss_pred cCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHH
Confidence 443445566666778999986654543333344567999888877777777776543
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=302.01 Aligned_cols=311 Identities=23% Similarity=0.269 Sum_probs=257.9
Q ss_pred chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEcc
Q psy13354 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDA 475 (1342)
Q Consensus 396 q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~ 475 (1342)
++...+.|.+++.+|+++|+|||+||+|+||+++|..+|+.+.|..+.. ..+|+.|++|..+..+.|||+..+..
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~-----~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQG-----HKSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC-----CCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 5778899999999999999999999999999999999999999975432 35899999999999999999998865
Q ss_pred C---CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEE
Q psy13354 476 A---STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQ 552 (1342)
Q Consensus 476 ~---~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~ 552 (1342)
. ...++++++++.+.+...|..+++||+|||++|.|+.++.|+|||+||+||++++||++|++++++++||+|||+.
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 4 3467999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHH
Q psy13354 553 FNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQI 632 (1342)
Q Consensus 553 i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l 632 (1342)
+.|++++.+++.+||.+. .+ ++++.+..++..++|++..++..++.-. . +.-+ .....+
T Consensus 162 ~~~~~~~~~~~~~~L~~~---~~--~~~~~a~~~~~la~G~~~~Al~l~~~~~------~--~~r~--------~~~~~l 220 (334)
T PRK07993 162 HYLAPPPEQYALTWLSRE---VT--MSQDALLAALRLSAGAPGAALALLQPER------W--QQRE--------ALCQAL 220 (334)
T ss_pred ccCCCCCHHHHHHHHHHc---cC--CCHHHHHHHHHHcCCCHHHHHHHhcCch------H--HHHH--------HHHHHH
Confidence 999999999999999642 23 6677788889999999999988764210 0 0000 011122
Q ss_pred HHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHHHHHH
Q psy13354 633 LDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISI 712 (1342)
Q Consensus 633 ~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~ 712 (1342)
.+.+..++.... +..+ .+++...++..+...+|+++.++... ....+.+....+...+++++.+.+..+++.+.
T Consensus 221 ~~~~~~~~~~~~---~~~~--~~~~~~~~L~~l~~~~rD~l~~~~~~-~~~~n~d~~~~i~~~a~~~~~~~l~~~~~~l~ 294 (334)
T PRK07993 221 AYALPSGDWLSL---LPAL--NHEQAPARLHWLATLLMDALKRQHGA-AYVTNQDQPPLVAQLANHLSPARLQAILGDVC 294 (334)
T ss_pred HHHhcCCCHHHH---HHHH--cccCHHHHHHHHHHHHHHHHHHhcCC-cceeCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 222222333222 2222 24567788999999999999998764 44566777777889999999999999999999
Q ss_pred HHHHhhcc--CCChhHHHHHHHHHhHcc
Q psy13354 713 HGRNELEL--APDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 713 ~~d~~lK~--~~~~~~~le~~ll~l~~~ 738 (1342)
++.+.+.. ..|+++.+|.+++++..+
T Consensus 295 ~~~~~l~~~~N~N~~L~le~lll~~~~~ 322 (334)
T PRK07993 295 HCREQLLSVTGVNRELLLTDLLLRIEHY 322 (334)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999995 679999999999998764
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=295.38 Aligned_cols=311 Identities=21% Similarity=0.230 Sum_probs=253.0
Q ss_pred cchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEc
Q psy13354 395 GQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMD 474 (1342)
Q Consensus 395 Gq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~ 474 (1342)
=+....+.|.+++.+|+++|+|||+||+|+||+++|+.+|+.+.|..+. ...+|+.|++|..+..+.|||+..+.
T Consensus 6 W~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~-----~~~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 6 WLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQ-----GDQPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred chHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHhcCCCCCEEEEc
Confidence 3677889999999999999999999999999999999999999997543 23599999999999999999999886
Q ss_pred c--CCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEE
Q psy13354 475 A--ASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQ 552 (1342)
Q Consensus 475 ~--~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~ 552 (1342)
. +...+++++|++.+.+...|..+++||+|||++|.|+.++.|+|||+||+||++++||++|+.++++++||+|||+.
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 5 23468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHH
Q psy13354 553 FNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQI 632 (1342)
Q Consensus 553 i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l 632 (1342)
+.|.+++.+++.+||.+.. ..++..+..++..++|++..++..++.-.. +.-+ ..+..+
T Consensus 161 ~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~~~~--------~~r~--------~~~~~l 219 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQGLL--------EQRK--------TFLRQF 219 (325)
T ss_pred EeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhCChH--------HHHH--------HHHHHH
Confidence 9999999999999998643 124445667788899999988776543110 0000 111111
Q ss_pred HHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHHHHHH
Q psy13354 633 LDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISI 712 (1342)
Q Consensus 633 ~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~ 712 (1342)
......++. +.++..+. +++...++.+|...+|+++..+........+.+....+.+.++++|.++|.++++.+.
T Consensus 220 ~~~~~~~~~---~~~~~~~~--k~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~~~s~~~L~~~i~~i~ 294 (325)
T PRK06871 220 WLFYRRRSP---LELLPLFD--KELVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQ 294 (325)
T ss_pred HHHhccCCH---HHHHHHHh--hccHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 111222222 23333322 3566778999999999999998876655667777888999999999999999999999
Q ss_pred HHHHhhcc--CCChhHHHHHHHHHhH
Q psy13354 713 HGRNELEL--APDEYAGFTMTLLRML 736 (1342)
Q Consensus 713 ~~d~~lK~--~~~~~~~le~~ll~l~ 736 (1342)
++.+.+++ +.|+.+.++-.+++..
T Consensus 295 ~~r~~L~~~~~iN~~L~l~~~l~~~~ 320 (325)
T PRK06871 295 KVRSDLLQINAVNQELILLDGLTRLV 320 (325)
T ss_pred HHHHHHHcccccCHHHHHHHHHHHHH
Confidence 99999984 5688888887777654
|
|
| >PRK05907 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-30 Score=296.30 Aligned_cols=294 Identities=13% Similarity=0.057 Sum_probs=247.0
Q ss_pred hHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCC
Q psy13354 399 ISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAST 478 (1342)
Q Consensus 399 ~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~ 478 (1342)
.+..+.+.+++|+ ++|++||.+- ....+.+.+.+... +...+++..
T Consensus 6 ~~~~~~~~~~~~~--~~y~~~g~~~---~~~~~~l~~~~~~~----------------------------~~~~fdg~~- 51 (311)
T PRK05907 6 SFKDFSQYYEEKR--PAVIVIGSSS---EEDKDIFIELLVSG----------------------------RKSEFDGQG- 51 (311)
T ss_pred HHHHHHHHHhcCC--ceEEEecCCc---HHHHHHHHHHhCCC----------------------------ccceecCCC-
Confidence 3466778889998 7899999998 66666666665311 112244433
Q ss_pred cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEE-EEeCCCC---CChHHHhccEEE--
Q psy13354 479 RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFI-LATTEPQ---KIPITVLSRCIQ-- 552 (1342)
Q Consensus 479 ~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlI-l~t~~~~---kl~~~L~sR~~~-- 552 (1342)
.++.++++.+++.|||+++|+|+|.+++.++....+.|.+|+++||+++++| ++. +.+ ++.+.|.+.+.+
T Consensus 52 ---~~~~~ii~~aetlPfFaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~-~~d~~kkl~K~i~k~~~v~~ 127 (311)
T PRK05907 52 ---LLQQELLSWTEHFGLFASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTT-KQECFSSLSKKLSSALCLSL 127 (311)
T ss_pred ---CCHHHHHHHHhcCCcccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEe-cccHHHHHHHHHhhcceecc
Confidence 3589999999999999999999999988888777889999999999976666 554 333 344556544444
Q ss_pred -EEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhc-CCcHHHHHHHHHHHHhhcC--CCCCHHHHHHHhccCcHHH
Q psy13354 553 -FNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGA-QGSMRDALSLTDQAINYSS--EKITLNSMQEMLSIIDQKY 628 (1342)
Q Consensus 553 -i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~-~g~lr~a~~~L~kl~~~~~--~~It~e~V~~~v~~~~~~~ 628 (1342)
++|.++++.++.+|+.++++++|+.|++++++++++++ ++|+..+.++++|++.|++ +.||.++|+++++.+.+++
T Consensus 128 ~~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~n 207 (311)
T PRK05907 128 FGEWFADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAAS 207 (311)
T ss_pred ccccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCccccc
Confidence 48999999999999999999999999999999999999 6999999999999999954 4599999999999999999
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHH
Q psy13354 629 LIQILDALAEQDGNLILSIANKIEIY-NLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLF 707 (1342)
Q Consensus 629 if~l~dal~~~~~~~al~~l~~L~~~-~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~ 707 (1342)
||+|+||+..++..+|++++++|..+ |++|++|+++|++|| |+++|.+.++|..+..-..- .||.++|.++
T Consensus 208 IF~L~dai~~~~~~~Al~il~~Ll~~~ge~p~~ILall~rQf--l~~~k~l~~~g~~~~~p~~v------afs~~~L~~~ 279 (311)
T PRK05907 208 LWKLRDALLRRDRVEGHSLLRSLLSDMGEDPLGIIAFLRSQC--LYGLRSIEEQSKERKHRIFV------AYGKERLLQA 279 (311)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCChHHHHHHHHHHH--HHHHHHHHHhcCCCCCCeEE------EECHHHHHHH
Confidence 99999999999999999999999999 999999999999999 89999887777654321000 1999999999
Q ss_pred HHHHHHHHHhhccC-CChhHHHHHHHHHhHcc
Q psy13354 708 YQISIHGRNELELA-PDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 708 l~~l~~~d~~lK~~-~~~~~~le~~ll~l~~~ 738 (1342)
+..|+++|+++|++ .|+.+++|++++++|.+
T Consensus 280 ~~~l~~~D~~iKtg~~d~~~~lElli~~~~~~ 311 (311)
T PRK05907 280 LNLLFYAESLIKNNVQDPILAVETLVIRMTNL 311 (311)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Confidence 99999999999964 79999999999999863
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-30 Score=296.27 Aligned_cols=307 Identities=19% Similarity=0.251 Sum_probs=252.1
Q ss_pred HHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccC---CCc
Q psy13354 403 LINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA---STR 479 (1342)
Q Consensus 403 L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~---~~~ 479 (1342)
..+.+..|+++|+|||+||+|+||+++|+.+|+.++|..+. ...||+.|++|..+..+.|||+..+... ...
T Consensus 12 ~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~-----~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i 86 (328)
T PRK05707 12 WQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQ-----GGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTI 86 (328)
T ss_pred HHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCC
Confidence 34445669999999999999999999999999999997543 2469999999999999999999988653 346
Q ss_pred CHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcCCC
Q psy13354 480 GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559 (1342)
Q Consensus 480 ~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~ 559 (1342)
++++++++++.+...|..+++||+|||++|.|+.++.|+|+|+||+||++++||++|++++++++||+|||+.+.|.+++
T Consensus 87 ~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~ 166 (328)
T PRK05707 87 KVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPS 166 (328)
T ss_pred CHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHHHHHHcc
Q psy13354 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQ 639 (1342)
Q Consensus 560 ~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~dal~~~ 639 (1342)
.+++.+||.+... ..+++.+..++..++|++..++..++.-. . + ....+++.+..+..+
T Consensus 167 ~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~~~~~------~--~---------~r~~~~~~l~~~~~~ 225 (328)
T PRK05707 167 NEESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLHEQGV------R--E---------QRARVLDGVKKLLKQ 225 (328)
T ss_pred HHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHHCcch------H--H---------HHHHHHHHHHHHhcC
Confidence 9999999976431 24566777888999999999987754310 0 0 011223333344433
Q ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc-ccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy13354 640 DGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI-LIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNEL 718 (1342)
Q Consensus 640 ~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~-~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~l 718 (1342)
+. .++.+...+. +++...++..|...+|+++..+..... ...+.+....+.+.+++++...|..+++.+.++...+
T Consensus 226 ~~-~~~~~~~~~~--k~~~~~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l~~~a~~~~~~~L~~~~~~l~~~~~~l 302 (328)
T PRK05707 226 QQ-SASQLAESWL--KVPLLLLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVLQYLAQKSPQAKVLALQDWLLEQRQKV 302 (328)
T ss_pred cc-cHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 32 3444444432 456778899999999999999886443 3556777788999999999999999999999999999
Q ss_pred c--cCCChhHHHHHHHHHhHcc
Q psy13354 719 E--LAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 719 K--~~~~~~~~le~~ll~l~~~ 738 (1342)
+ ...|+.+.+|.+++++..+
T Consensus 303 ~~~~NvN~~L~le~lll~~~~~ 324 (328)
T PRK05707 303 LGKANLNRQLLLEALLVQWAGL 324 (328)
T ss_pred hccCCCCHHHHHHHHHHHHHHH
Confidence 7 4679999999999998643
|
|
| >PRK07914 hypothetical protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=300.13 Aligned_cols=300 Identities=9% Similarity=0.041 Sum_probs=259.7
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhccC-CCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHH
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCI-GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLE 489 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~~~-~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~ 489 (1342)
.++++|||||++-+........+.+.+... +. ...++..+++... ++.++ .
T Consensus 3 ~l~~iYll~G~E~~l~~~~~~~i~~~~~~~~~~-----------------------~~~n~~~~d~~~~----~~~~i-~ 54 (320)
T PRK07914 3 EPAPLHLVLGDEELLVERAVAAVLRSARQRAGT-----------------------ADVPVSRMRAGDV----STYEL-A 54 (320)
T ss_pred CCCceEEEEecHHHHHHHHHHHHHHHHhcCcCC-----------------------CCCceEEeccccC----CHHHH-H
Confidence 467899999999999999999998776421 11 1135677776543 23554 5
Q ss_pred HHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCC---CChHHHhccE-EEEEEcCC-CHHHHH
Q psy13354 490 QTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQ---KIPITVLSRC-IQFNLKKM-LHHDIV 564 (1342)
Q Consensus 490 ~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~---kl~~~L~sR~-~~i~~~~l-~~~el~ 564 (1342)
++.+.|+|+++|+|+|+++..+..+..+.|.+|+++|++++++|++++... ++.+++.+.+ .+++|.++ +..++.
T Consensus 55 ~~~t~plF~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~ 134 (320)
T PRK07914 55 ELLSPSLFAEERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERA 134 (320)
T ss_pred HhcCCCCCCCceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHH
Confidence 555899999999999999988877778899999999999899988764322 4456888776 58999999 999999
Q ss_pred HHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHH
Q psy13354 565 NNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLI 644 (1342)
Q Consensus 565 ~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~a 644 (1342)
.|+.+++++.|+.|+++++++|++.+|+|+..+.++++|++.|.++.||.++|+++++.+.+.++|+++|++..|+..+|
T Consensus 135 ~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A 214 (320)
T PRK07914 135 DFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGA 214 (320)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999998887888999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCc-------ccccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy13354 645 LSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP-------EILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNE 717 (1342)
Q Consensus 645 l~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~-------~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~ 717 (1342)
+.++++|+..|++|..|+++|+++||.|++++... +....+++..+.+.+++++||.++|.+++..|.++|.+
T Consensus 215 ~~~l~~L~~~ge~p~~il~~l~~~~r~L~~~k~~~~~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~ 294 (320)
T PRK07914 215 AEALRWAMMRGEPHVVLADALAEAVHTIARVGPLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNAD 294 (320)
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998531 22344556667789999999999999999999999999
Q ss_pred hccC-CChhHHHHHHHHHhHcc
Q psy13354 718 LELA-PDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 718 lK~~-~~~~~~le~~ll~l~~~ 738 (1342)
+|++ .|++.+||.+++++|.+
T Consensus 295 lK~~~~~~~~~lE~~i~~~~~~ 316 (320)
T PRK07914 295 VKGAAADADYALESAVRRVAEL 316 (320)
T ss_pred hhcCCCChHHHHHHHHHHHHHH
Confidence 9965 79999999999999974
|
|
| >PRK05629 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=298.26 Aligned_cols=301 Identities=9% Similarity=0.063 Sum_probs=260.0
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHH
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQ 490 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~ 490 (1342)
.++++|||||++.+........+.+.+..... ...++..+++... ++.++++.
T Consensus 4 ~l~~vyL~~G~e~~l~~~~~~~i~~~~~~~~~-----------------------~~~n~~~~d~~e~----~~~~l~~~ 56 (318)
T PRK05629 4 VQPPVHLVLGDDEFLAERARLNIVHDIRSSMA-----------------------DSLQVTTLKASEV----SQGELLDA 56 (318)
T ss_pred cCCceEEEEeCHHHHHHHHHHHHHHHHhccCC-----------------------CCCceEEeecccC----CHHHHHHh
Confidence 57889999999998888787777776653221 1246777776542 35677765
Q ss_pred HhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCC---CChHHHhccEEEEEEcCCCHHHHHHHH
Q psy13354 491 TIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQ---KIPITVLSRCIQFNLKKMLHHDIVNNL 567 (1342)
Q Consensus 491 ~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~---kl~~~L~sR~~~i~~~~l~~~el~~~l 567 (1342)
+ +.|+|+++|+|+|++++...+...+.++.++++|++++++|++++..+ ++.+.+++.+.+++|.++++.++..|+
T Consensus 57 ~-t~slF~~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi 135 (318)
T PRK05629 57 L-SPSLFGEDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWV 135 (318)
T ss_pred h-CcCccCCceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHH
Confidence 4 899999999999999988777677899999999999999998876443 455688889999999999999999999
Q ss_pred HHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHH
Q psy13354 568 CYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSI 647 (1342)
Q Consensus 568 ~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~ 647 (1342)
.++++++|++|+++++++|++.+++|+..+.++++|++.|.++.||.++|++++....+.++|+++|++..++..+|+.+
T Consensus 136 ~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~ 215 (318)
T PRK05629 136 TQEFKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVAS 215 (318)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhhC---------cccccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy13354 648 ANKIEIYNLSYSIVLKDLSLLLHQISLIQIS---------PEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNEL 718 (1342)
Q Consensus 648 l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~---------~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~l 718 (1342)
+++|+..|++|+.|+++|.++||.+.++... ++....+++..+.+.+++++||.++|.+++..|.++|.++
T Consensus 216 l~~l~~~g~~pi~il~~l~~~~r~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~l~~~D~~~ 295 (318)
T PRK05629 216 TRRALQLGVSPVALAAALSMKVGQIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAV 295 (318)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998888755332 1223355667777999999999999999999999999999
Q ss_pred cc-CCChhHHHHHHHHHhHccc
Q psy13354 719 EL-APDEYAGFTMTLLRMLVFQ 739 (1342)
Q Consensus 719 K~-~~~~~~~le~~ll~l~~~~ 739 (1342)
|+ +.|++.+||+++++++.+.
T Consensus 296 K~~~~d~~~~lE~~i~~~~~~~ 317 (318)
T PRK05629 296 KGQGGDPEFAIESAVRRVAELA 317 (318)
T ss_pred hCCCCCHHHHHHHHHHHHHhhc
Confidence 97 5699999999999998753
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=285.74 Aligned_cols=305 Identities=22% Similarity=0.260 Sum_probs=245.9
Q ss_pred chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEcc
Q psy13354 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDA 475 (1342)
Q Consensus 396 q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~ 475 (1342)
|+..++.|... .++++|+|||+||+|+||+++|+.+|+.++|..+. ....||+.|.+|..+..+.|||+..+..
T Consensus 6 ~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~----~~~~~Cg~C~~C~~~~~~~HPD~~~i~p 79 (342)
T PRK06964 6 QTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQ----PDGEPCGTCAACNWFAQGNHPDYRIVRP 79 (342)
T ss_pred cHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCC----CCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 45666777764 67999999999999999999999999999997532 1236999999999999999999987743
Q ss_pred C-----------------------------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC
Q psy13354 476 A-----------------------------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526 (1342)
Q Consensus 476 ~-----------------------------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p 526 (1342)
. ...++++++++.+.+...|..+++||+|||++|.|+.++.|+|||+||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP 159 (342)
T PRK06964 80 EALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEP 159 (342)
T ss_pred ccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCC
Confidence 2 13467899999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy13354 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 527 ~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~ 606 (1342)
|++++||++|++++++++||+|||+.+.|++++.+++.+||.+. |+ ++. +.++..++|++..++..++.
T Consensus 160 p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~~--~~~l~~~~Gsp~~Al~~~~~--- 228 (342)
T PRK06964 160 PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--ADA--DALLAEAGGAPLAALALASD--- 228 (342)
T ss_pred CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--ChH--HHHHHHcCCCHHHHHHHHCC---
Confidence 99999999999999999999999999999999999999999753 43 332 33567789999999877532
Q ss_pred hcCCCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCc
Q psy13354 607 YSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDS 686 (1342)
Q Consensus 607 ~~~~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~ 686 (1342)
+. .+.. -.+++.+........+.+.+.+. +++...++.++...+|+++..+..... ..+.
T Consensus 229 ---~~--~~~~------------~~~~~~l~~~~~~~~~~~~~~~~--k~~~~~~l~~l~~~lrD~l~~~~~~~~-~~~~ 288 (342)
T PRK06964 229 ---EN--RPLR------------DWTLGQLAAGAACDAFACAETLQ--KLPVPAVLGWLQRWLYDLLAQRLAGAP-RYFP 288 (342)
T ss_pred ---Ch--HHHH------------HHHHHHHhccCchhHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHcCCCc-eecH
Confidence 10 0111 11222333323333444444443 356677899999999999999876443 4455
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 687 PNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 687 ~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
+....+.+.+++++...|.++++.+.+....+....|+++.+|.+++++..
T Consensus 289 d~~~~l~~~a~~~~~~~L~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~~ 339 (342)
T PRK06964 289 AQRAALARCAAAVDANALARFAKAVTRQRAVENHPLAARLVFEELFLGYRE 339 (342)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHHH
Confidence 666778899999999999999999999998888899999999999998754
|
|
| >KOG0991|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=257.97 Aligned_cols=270 Identities=21% Similarity=0.291 Sum_probs=242.9
Q ss_pred HHHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 377 IKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 377 ~~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
.+.+|..||||..+.|+||.+..++.|.-..+.|+.|| ++|+||||+||||.+..+|++|..+..
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~-liisGpPG~GKTTsi~~LAr~LLG~~~-------------- 77 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPN-LIISGPPGTGKTTSILCLARELLGDSY-------------- 77 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCc-eEeeCCCCCchhhHHHHHHHHHhChhh--------------
Confidence 45679999999999999999999999999999999998 799999999999999999999984311
Q ss_pred cchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcC---ccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEE
Q psy13354 457 SVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAP---INARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFI 533 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p---~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlI 533 (1342)
...+.++|+++.+|++.++.-+..+...- -.++.|+||+||+|.++..++.+|.+++|-.+..+.|.
T Consensus 78 ----------ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFa 147 (333)
T KOG0991|consen 78 ----------KEAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFA 147 (333)
T ss_pred ----------hhHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhh
Confidence 12478999999999999888777654332 13788999999999999999999999999999999999
Q ss_pred EEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCC
Q psy13354 534 LATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKIT 613 (1342)
Q Consensus 534 l~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It 613 (1342)
++||..+|+..+|.|||..++|..+++.++...|..+++.+++.++++.++.+...+.||||.++|.|+... .+.+.|+
T Consensus 148 laCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~-~g~g~Vn 226 (333)
T KOG0991|consen 148 LACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTV-NGFGLVN 226 (333)
T ss_pred hhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHh-ccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999986543 3456799
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy13354 614 LNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQI 672 (1342)
Q Consensus 614 ~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l 672 (1342)
.+.|-+++.......+.+++.++..++...|+++++.+-+.|.+|..|+..+-+-...+
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~ 285 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFRVVKNM 285 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999887776654443
|
|
| >PRK07452 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-29 Score=289.96 Aligned_cols=298 Identities=11% Similarity=0.146 Sum_probs=253.8
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhh
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIY 493 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~ 493 (1342)
++|||||++.+.+...++.+.+.+..+.. ...++..+++.+ .+.+.++++++.+
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~-----------------------~~fn~~~~d~~~---~~~~~~~~~~~~t 55 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEW-----------------------KSFNYSRLDGDD---ADQAIQALNEAMT 55 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchh-----------------------hhcchhhcCCcc---chHHHHHHHHhcC
Confidence 57999999999999999999887753210 112455555543 2347889999999
Q ss_pred cCccCCceEEEeccCccC---CHHHHHHHHHhhcCCCCcEEEEEEe-CCCC---CChHHHhccEEEEEEcCC---CHHHH
Q psy13354 494 APINARYKIYVIDEVHML---THHAFNAMLKTLEEPPKYIKFILAT-TEPQ---KIPITVLSRCIQFNLKKM---LHHDI 563 (1342)
Q Consensus 494 ~p~~~~~rvviIDE~~~L---~~~~~~~Ll~~Le~p~~~~vlIl~t-~~~~---kl~~~L~sR~~~i~~~~l---~~~el 563 (1342)
.|||+++|+|+|++++.+ +++..+.|.+++++||+++++|+++ +..+ +..+.+.+.+.+.+|.++ +.+++
T Consensus 56 ~pff~~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l 135 (326)
T PRK07452 56 PPFGSGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGL 135 (326)
T ss_pred CCCCCCceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHH
Confidence 999999999999998765 5667889999999999999999864 4443 455678888888888766 45779
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc---CCCCCHHHHHHHhccCcHHHHHHHHHHHHccC
Q psy13354 564 VNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS---SEKITLNSMQEMLSIIDQKYLIQILDALAEQD 640 (1342)
Q Consensus 564 ~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~---~~~It~e~V~~~v~~~~~~~if~l~dal~~~~ 640 (1342)
..|+.+++++.|+.|+++++++|++.+++|++.+.++++|++.|+ ++.||.++|++++... ++++|++++++..+|
T Consensus 136 ~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~ 214 (326)
T PRK07452 136 KQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGN 214 (326)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999994 3359999999999886 689999999999999
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccC------------CchhHHHHHHHHhcCCHHHHHHHH
Q psy13354 641 GNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIK------------DSPNYNEIIQLSKKFNIEQIQLFY 708 (1342)
Q Consensus 641 ~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~------------~~~~~~~~~~~a~~~s~~~L~~~l 708 (1342)
..+|+.++++|..+|++|+.|+++|+++||.++++|.+.++|.. +++....+.+++++||.++|.+++
T Consensus 215 ~~~A~~~l~~L~~~g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l 294 (326)
T PRK07452 215 TGKALALLDDLLDANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLL 294 (326)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999876544432 233344567889999999999999
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 709 QISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 709 ~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
..|.++|.++|++.++..++|.+++++|.+
T Consensus 295 ~~L~~~D~~iK~g~~~~~~le~~i~~~~~~ 324 (326)
T PRK07452 295 PLLLDLEASLKQGANPINALQDKLIELCQL 324 (326)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 999999999999888888999999999975
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=282.54 Aligned_cols=333 Identities=20% Similarity=0.275 Sum_probs=254.0
Q ss_pred cCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCC-----CcccCCCCCCcch
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNG-----GITSQPCGKCSVC 459 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~-----~~~~~~c~~~~~~ 459 (1342)
.+|..|++|+||+.+++.|.+++.+|+++|+|||+||+|+||+++|..+++.+.|+.+...+ ..+-.+|+.|++|
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 68999999999999999999999999999999999999999999999999999997643221 1233459999999
Q ss_pred hhhccCCCccEEEEccC---------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcE
Q psy13354 460 VKIDNGCFMDYIEMDAA---------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYI 530 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~---------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~ 530 (1342)
..+..+.|||+..+... ....+++++++.+.+...|..++++||||||+|.++..+.|+|++++|+||+.+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 99999999999988541 223578999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy13354 531 KFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE 610 (1342)
Q Consensus 531 vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~ 610 (1342)
+||++|++++.+.++++|||+.+.|.+++.+++.+||.+. +...+++.+..+++.++|+++.++.+++.-.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ll~~~~----- 243 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRLAGGDG----- 243 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHHhcccc-----
Confidence 9999999999999999999999999999999999999764 3345566668899999999999998875310
Q ss_pred CCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHHHHHHhhCc-ccccCCch
Q psy13354 611 KITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNL-S-YSIVLKDLSLLLHQISLIQISP-EILIKDSP 687 (1342)
Q Consensus 611 ~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~-~-~~~il~~L~~~~r~l~~~k~~~-~~~~~~~~ 687 (1342)
. +. ...+++++......+...++.+.+.+...+. . ...++.+|...+.++++.+... ......+.
T Consensus 244 -~--~~---------~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l~d~~~~~~~~~~~~~~~~~ 311 (365)
T PRK07471 244 -L--AL---------YRRLTALLDTLPRLDRRALHALADAAAGRDRAARFALFLDLLDRWLARLARAGARGAPPPEAVPG 311 (365)
T ss_pred -h--HH---------HHHHHHHHhccccCCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHhhccCCCCccccch
Confidence 0 00 0112223222223333333444444333221 1 3446777777777777765531 01111222
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhc-cCCChhHHHHHHHHHhHcc
Q psy13354 688 NYNEIIQLSKKFNIEQIQLFYQISIHGRNELE-LAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 688 ~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK-~~~~~~~~le~~ll~l~~~ 738 (1342)
....+.+.+.+.+...|.++++.+.+.-.... .+.|++..++.+++.+...
T Consensus 312 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Ln~~l~~~~~l~~~~~~ 363 (365)
T PRK07471 312 EAALLARLAPDARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEA 363 (365)
T ss_pred hhHHHHhhccchhHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHh
Confidence 23444455555567788888888888777777 4679999999999988653
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=280.96 Aligned_cols=286 Identities=22% Similarity=0.265 Sum_probs=225.9
Q ss_pred CccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCc
Q psy13354 389 NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFM 468 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 468 (1342)
.|++++||+++++.|.+++++|+++|+|||+||+|+||+++|..+++.+.|. .+|+.|.+|. +..+.||
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~----------~~c~~c~~~~-~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQ----------GSPSKNIRRR-LEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCC----------CCCCCcHhcc-cccCCCC
Confidence 5899999999999999999999999999999999999999999999999985 2799999998 8999999
Q ss_pred cEEEEccC-----------------------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcC
Q psy13354 469 DYIEMDAA-----------------------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEE 525 (1342)
Q Consensus 469 d~~~i~~~-----------------------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~ 525 (1342)
|+..+... ..-++++++++.+.+...|+++++||+|||++|.|+..+.|+|+++||+
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE 150 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE 150 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC
Confidence 98866542 1234678999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHH
Q psy13354 526 PPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAI 605 (1342)
Q Consensus 526 p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~ 605 (1342)
|| +++||+++++++++++||+|||+.++|.+++.+++.+||.+....++.. .....++..++|+++.+++.++...
T Consensus 151 Pp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~~~~ 226 (314)
T PRK07399 151 PG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIEQLQ 226 (314)
T ss_pred CC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99 7889999999999999999999999999999999999999875443322 2256788999999999999876432
Q ss_pred hhcCCCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHH-cC-CCHHHHHHHHHHHHHHHHHHhhCccccc
Q psy13354 606 NYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YN-LSYSIVLKDLSLLLHQISLIQISPEILI 683 (1342)
Q Consensus 606 ~~~~~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~-~~-~~~~~il~~L~~~~r~l~~~k~~~~~~~ 683 (1342)
. +..+. ++.+..+. ++...++.+.+.+.. .+ +.-..++..+..+|+. +
T Consensus 227 ~-----~~~~~-------------~~~~~~~~-~~~~~~~~~a~~~~~~~~~e~Q~~~l~~~~~~~~~----~------- 276 (314)
T PRK07399 227 S-----IPPEL-------------LQKLEQPP-KSPLEALELAKDISEELDIEQQLWLIDYLQQHYWQ----K------- 276 (314)
T ss_pred H-----HHHHH-------------HHHHHhcc-cCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH----h-------
Confidence 1 11111 12222222 344555555444431 11 1122344444444433 0
Q ss_pred CCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 684 KDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 684 ~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
.....++..+.++.+.+....++++.+|.++++++.
T Consensus 277 ------------------~~~~~~~~~l~~a~~~l~~nvn~~lv~e~~~l~l~~ 312 (314)
T PRK07399 277 ------------------TKNRQLLKQLEKLRKQLLSYVQPRLAWEVTLLELSQ 312 (314)
T ss_pred ------------------hcchHHHHHHHHHHHHHHHcCCcchhHHHHHHHHhc
Confidence 013567888899999999999999999999999874
|
|
| >PRK08487 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-28 Score=281.56 Aligned_cols=303 Identities=13% Similarity=0.109 Sum_probs=255.9
Q ss_pred HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcC
Q psy13354 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG 480 (1342)
Q Consensus 401 ~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~ 480 (1342)
+.+...+++|+++++|||||++-+.+......+.+.+..... ..+ +..+ .
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~------------------------~~~-~~~~--~--- 53 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENE------------------------LKT-LYFD--E--- 53 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchH------------------------hhh-hchh--h---
Confidence 578888999999999999999999999999999987752110 001 1111 1
Q ss_pred HHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCC---ChHHHhcc--EEEEEE
Q psy13354 481 INEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQK---IPITVLSR--CIQFNL 555 (1342)
Q Consensus 481 ~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~k---l~~~L~sR--~~~i~~ 555 (1342)
.++.++++.+.+.|+|+++|+|+|+++..+.....+.|.+++++|++.+++|+.....++ +.+.+... +..++|
T Consensus 54 -~~~~~i~~~~~t~plF~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~ 132 (328)
T PRK08487 54 -YDFEQAKDFLSQSSLFGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRF 132 (328)
T ss_pred -ccHHHHHHHHhcccccCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEe
Confidence 357899999999999999999999998777776778999999999888888876555443 23444433 678999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHHHH
Q psy13354 556 KKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDA 635 (1342)
Q Consensus 556 ~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~da 635 (1342)
.++++.++..|+.+++++.|+.|+++++++|+..+++|+..+.+||+|+..|.+ .||.++|++++..+.+.++|+++++
T Consensus 133 ~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~-~It~edV~~~v~~~~e~~vF~l~da 211 (328)
T PRK08487 133 FKPNAREALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNE-PITLKDIQELVFGLGSVSFEDFFEK 211 (328)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC-CCCHHHHHHHhcccccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999965 7999999999999999999999999
Q ss_pred HHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcc----------cccC-CchhHHHHHHHHhcCCHHHH
Q psy13354 636 LAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPE----------ILIK-DSPNYNEIIQLSKKFNIEQI 704 (1342)
Q Consensus 636 l~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~----------~~~~-~~~~~~~~~~~a~~~s~~~L 704 (1342)
+.+++ .|+.++++|..+|++|+.|+++|+++||+|++++.... .+.. +++..+++.+++++||.++|
T Consensus 212 i~~g~--~a~~~l~~L~~~g~~pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~~~~q~~~~s~~~L 289 (328)
T PRK08487 212 LLNKK--DIKDDLEKLLEEGFNEIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKEAQY 289 (328)
T ss_pred HHCCC--cHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHHHHHHHhccCHHHH
Confidence 99999 58899999999999999999999999999987653211 1222 34567778899999999999
Q ss_pred HHHHHHHHHHHHhhccC--CChhHHHHHHHHHhHc
Q psy13354 705 QLFYQISIHGRNELELA--PDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 705 ~~~l~~l~~~d~~lK~~--~~~~~~le~~ll~l~~ 737 (1342)
.+++..|+++|.++|++ .+....+|++++.+..
T Consensus 290 ~~~l~~L~e~D~~lK~g~~~~~~~~~~~~~~~~~~ 324 (328)
T PRK08487 290 KEIFELLLEWELELKTGQKIDKNLFLLSTLIKIQK 324 (328)
T ss_pred HHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence 99999999999999975 4677788988888753
|
|
| >PRK06585 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=281.35 Aligned_cols=310 Identities=12% Similarity=0.052 Sum_probs=257.5
Q ss_pred HHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcC
Q psy13354 402 SLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG 480 (1342)
Q Consensus 402 ~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~ 480 (1342)
.+...+.+ ....++|||||++.+.....++.+.+.+..... ...++..+++....
T Consensus 8 ~~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~-----------------------~~fn~~~~~~~e~~- 63 (343)
T PRK06585 8 EVDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDLD-----------------------DPFAVVRLDGDDLD- 63 (343)
T ss_pred HHHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCCC-----------------------CCcceeeccHHHhh-
Confidence 34445554 346689999999999999999999988753110 11234555443211
Q ss_pred HHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCC---CChHHHh--ccEEEEEE
Q psy13354 481 INEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQ---KIPITVL--SRCIQFNL 555 (1342)
Q Consensus 481 ~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~---kl~~~L~--sR~~~i~~ 555 (1342)
.++.++++.+.+.|+|+++|+|+|++++ +...+.|.+++++|++++++|+...+.+ ++.+.+. ..+..+.|
T Consensus 64 -~~~~~~~~~~~t~slF~~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~ 139 (343)
T PRK06585 64 -ADPARLEDEANAISLFGGRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPC 139 (343)
T ss_pred -cCHHHHHHHHhCCCCCCCceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEec
Confidence 1378999999999999999999999654 3456789999999999999988776554 3344443 34578899
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC--CCCCHHHHHHHhccCcHHHHHHHH
Q psy13354 556 KKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS--EKITLNSMQEMLSIIDQKYLIQIL 633 (1342)
Q Consensus 556 ~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~--~~It~e~V~~~v~~~~~~~if~l~ 633 (1342)
.+++..++..|+.+++++.|++++++++++|++.++||++.+.++|+|+..|++ +.||.++|+++++...+.++|+++
T Consensus 140 ~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~ 219 (343)
T PRK06585 140 YADDERDLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAA 219 (343)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999974 469999999999999999999999
Q ss_pred HHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCch------------hHHHHHHHHhcCCH
Q psy13354 634 DALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSP------------NYNEIIQLSKKFNI 701 (1342)
Q Consensus 634 dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~------------~~~~~~~~a~~~s~ 701 (1342)
|++.++|..+|+.+++.|+.+|++|+.|+++|+++||+|++++...+.|....+ ..+.+.+++++||.
T Consensus 220 dai~~~~~~~a~~~l~~ll~~g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~ 299 (343)
T PRK06585 220 DAALAGDLAAFERALDRALAEGTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSL 299 (343)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999876544433211 22347899999999
Q ss_pred HHHHHHHHHHHHHHHhhccC-CChhHHHHHHHHHhHccc
Q psy13354 702 EQIQLFYQISIHGRNELELA-PDEYAGFTMTLLRMLVFQ 739 (1342)
Q Consensus 702 ~~L~~~l~~l~~~d~~lK~~-~~~~~~le~~ll~l~~~~ 739 (1342)
++|.+++..|.++|.++|++ .+++..+|.+++++|..+
T Consensus 300 ~~L~~~l~~l~~~d~~lK~~~~~~~~~le~~i~~~~~~~ 338 (343)
T PRK06585 300 ERLLRALERLQAAELDCRRNPALADAIARRVLLSIAVRA 338 (343)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999965 688999999999999743
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=269.39 Aligned_cols=301 Identities=20% Similarity=0.254 Sum_probs=238.0
Q ss_pred chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEcc
Q psy13354 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDA 475 (1342)
Q Consensus 396 q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~ 475 (1342)
+....+.|.+++..++++|+|||+||+|+||+++|+.+|+.+.|... ...+|+.|++|..+..+.|||+..+..
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~------~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNY------QSEACGFCHSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCC------CCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 67788999999999999999999999999999999999999999752 236899999999999999999998866
Q ss_pred C---CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEE
Q psy13354 476 A---STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQ 552 (1342)
Q Consensus 476 ~---~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~ 552 (1342)
. ...++++++++.+.+...|..+++||+|||++|.|+.++.|+|+|+||+||++++||++|++++++++||+|||+.
T Consensus 82 ~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 82 EKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred CcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence 4 3457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHH
Q psy13354 553 FNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQI 632 (1342)
Q Consensus 553 i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l 632 (1342)
+.|++++.+++.+||.+ .|.. ....+++.++|++..+...++. +.. +.- ...+..+
T Consensus 162 ~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~~------~~~--~~~--------~~~~~~l 217 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMKE------GGL--EKY--------HKLERQL 217 (319)
T ss_pred EeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhCC------CcH--HHH--------HHHHHHH
Confidence 99999999999999864 3543 2356788899999999877531 000 000 1122344
Q ss_pred HHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHHHHHH
Q psy13354 633 LDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISI 712 (1342)
Q Consensus 633 ~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~ 712 (1342)
.+.+..+. ...+.+...+.... ...+..|...++++++++.+ ..+.+....+... .+++...|.+.++.+.
T Consensus 218 ~~~l~~~~-~~~~~~a~~~~~~~---~~~l~~L~~ll~Dll~~~~g----~~~~~~~~~~~~l-~~~~~~~l~~~~~~l~ 288 (319)
T PRK06090 218 VDALSGPV-SDQLKCASLIAADP---LTHLSWLWLLLTDAQKVHFG----VQNEYYLPGSAAL-GPFTYSGLYVSTAKLE 288 (319)
T ss_pred HHHHhcCc-ccHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHhC----CcchhhhHHHHHH-HhhCHHHHHHHHHHHH
Confidence 44444443 34455555543322 23667788899999988865 2223333334444 6668999999999999
Q ss_pred HHHHhhcc--CCChhHHHHHHHHHh
Q psy13354 713 HGRNELEL--APDEYAGFTMTLLRM 735 (1342)
Q Consensus 713 ~~d~~lK~--~~~~~~~le~~ll~l 735 (1342)
++.+.+.. ..++...+|.++++.
T Consensus 289 ~~~~~L~~~~~ln~elll~~lll~~ 313 (319)
T PRK06090 289 RLKEQLQQFSGLNTELLIMNWLIES 313 (319)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHH
Confidence 99999984 347777777777765
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=262.19 Aligned_cols=256 Identities=25% Similarity=0.368 Sum_probs=223.2
Q ss_pred HHHhhccCCCCccccccchhhH---HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHIS---KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~---~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
.+|+.+.||++|++++||+|.+ ..|.++++.|.+++ ++||||||+||||+|++|++..++
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~S-mIl~GPPG~GKTTlA~liA~~~~~---------------- 74 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHS-MILWGPPGTGKTTLARLIAGTTNA---------------- 74 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCce-eEEECCCCCCHHHHHHHHHHhhCC----------------
Confidence 4899999999999999999998 67999999999986 799999999999999999998874
Q ss_pred CcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
+|..+++. ..++.+++++++.+......+++.|++|||+|.|++..+++||..+|+. .++||.+
T Consensus 75 -------------~f~~~sAv-~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G--~iilIGA 138 (436)
T COG2256 75 -------------AFEALSAV-TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENG--TIILIGA 138 (436)
T ss_pred -------------ceEEeccc-cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCC--eEEEEec
Confidence 57777765 5678999999999988877788999999999999999999999999984 7889999
Q ss_pred eCCCC--CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh--cCCC-----cchhHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy13354 536 TTEPQ--KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK--ENIK-----FETSALNLIATGAQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 536 t~~~~--kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~--~g~~-----i~~~al~~La~~~~g~lr~a~~~L~kl~~ 606 (1342)
|++.. .+-++|+|||+++.|++++.+++.+.|++.+.. .|+. +++++.++|+..++||.|.++|.||-+..
T Consensus 139 TTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~ 218 (436)
T COG2256 139 TTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAAL 218 (436)
T ss_pred cCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 98877 456899999999999999999999999984443 4544 78999999999999999999999999887
Q ss_pred hcCC--CCCHHHHHHHhccCc----------HHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy13354 607 YSSE--KITLNSMQEMLSIID----------QKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSL 667 (1342)
Q Consensus 607 ~~~~--~It~e~V~~~v~~~~----------~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~ 667 (1342)
.+.. .++.++++++++... -+.+..+.+++...|.+.|+..+.+|++.|++|..|...|.+
T Consensus 219 ~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~ 291 (436)
T COG2256 219 SAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVR 291 (436)
T ss_pred hcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 7643 356899998886422 246777888888999999999999999999999988766655
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-27 Score=271.27 Aligned_cols=219 Identities=25% Similarity=0.362 Sum_probs=193.7
Q ss_pred hccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCC-CcccCCCCCCcchhh
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNG-GITSQPCGKCSVCVK 461 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~-~~~~~~c~~~~~~~~ 461 (1342)
....|..|.+++||+++++.|..++..|+++|++||+||+|+|||++|+.+++.+.|....... .....+|+.|.+|..
T Consensus 15 ~~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 15 GVPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred CCCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 4479999999999999999999999999999999999999999999999999999995321111 122458999999999
Q ss_pred hccCCCccEEEEccC---------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEE
Q psy13354 462 IDNGCFMDYIEMDAA---------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKF 532 (1342)
Q Consensus 462 ~~~~~~~d~~~i~~~---------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vl 532 (1342)
+..+.|||+..+... ...++++++++.+.+...|..+++|||||||+|.|+.++.|+|++.+|+|+..++|
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 999999999877432 22357899999999988899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHH
Q psy13354 533 ILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQ 603 (1342)
Q Consensus 533 Il~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~k 603 (1342)
|++++.+.++.++|+|||..+.|.+++.+++.+||.+.....+ ++++++..+++.++|++|.++++++.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999988544333 77999999999999999999988754
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=267.09 Aligned_cols=306 Identities=20% Similarity=0.284 Sum_probs=249.1
Q ss_pred ccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEE
Q psy13354 394 IGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEM 473 (1342)
Q Consensus 394 vGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i 473 (1342)
+-++...+.+... .++++|+|||+||+|+|||++|+.+|+.++|..+. ....+|+.|++|..+..+.|||+..+
T Consensus 4 PW~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~----~~~~~Cg~C~~C~~~~~~~HpD~~~~ 77 (325)
T PRK08699 4 PWHQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPA----PGHKPCGECMSCHLFGQGSHPDFYEI 77 (325)
T ss_pred CccHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCC----CCCCCCCcCHHHHHHhcCCCCCEEEE
Confidence 3456667777766 57999999999999999999999999999997532 12359999999999999999999999
Q ss_pred ccCC----------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCCh
Q psy13354 474 DAAS----------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIP 543 (1342)
Q Consensus 474 ~~~~----------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~ 543 (1342)
+..+ ..++++++++.+.+...|..+++||++||+++.|+.++.++|++++|+|+..+.||++|++++.++
T Consensus 78 ~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll 157 (325)
T PRK08699 78 TPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVL 157 (325)
T ss_pred ecccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhCh
Confidence 7642 247899999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhcc
Q psy13354 544 ITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSI 623 (1342)
Q Consensus 544 ~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~ 623 (1342)
+++.|||+.+.|.+++.+++..||.+ .|.. +.. ..+ ..++|.+..+.. +...+.
T Consensus 158 ~ti~SRc~~~~~~~~~~~~~~~~L~~----~~~~--~~~-~~l-~~~~g~p~~~~~---------------~~~~~~--- 211 (325)
T PRK08699 158 PTIKSRCRKMVLPAPSHEEALAYLRE----RGVA--EPE-ERL-AFHSGAPLFDEE---------------PELRAL--- 211 (325)
T ss_pred HHHHHHhhhhcCCCCCHHHHHHHHHh----cCCC--cHH-HHH-HHhCCChhhhcC---------------chHHHH---
Confidence 99999999999999999999999964 3442 221 223 346776632210 000000
Q ss_pred CcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHH
Q psy13354 624 IDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQ 703 (1342)
Q Consensus 624 ~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~ 703 (1342)
--++++.+...+....+.+...+...+.+...++.+|...+|+++.++.... ...+.+....+.+.+++++...
T Consensus 212 -----r~~~~~~l~~~~~~~~l~~~~~~~~~k~~~~~~l~~l~~~~rDll~~~~~~~-~~~~~d~~~~l~~~a~~~~~~~ 285 (325)
T PRK08699 212 -----RIKLLDILAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMK-PVYYPAYEDRLLQTASGFRPRN 285 (325)
T ss_pred -----HHHHHHHHHccChhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHcCCC-cccCHhHHHHHHHHHHhcCHHH
Confidence 0133444555566667777777777677888899999999999999987643 3456666778899999999999
Q ss_pred HHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 704 IQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 704 L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
|.++++.+.+....+..+.|+++.+|.+++++..
T Consensus 286 L~~~~~~l~~~~~~l~~n~n~~L~le~lll~~~~ 319 (325)
T PRK08699 286 VFAAEDMLKQLAPYGFHTLNVKMQIEHLLINYLE 319 (325)
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999854
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-27 Score=271.10 Aligned_cols=318 Identities=23% Similarity=0.295 Sum_probs=261.8
Q ss_pred CceeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..+..++++||++.+ +++++.+++. .|+.|.++++.. +....+.+||+ .+++++|.+.+++|+ ||..||
T Consensus 39 ~~~~nf~SNdYLGLa~~~~~~~a~~~~~~-~~g~g~~gsR~i~G~~~~h~~LE~----~lA~f~g~e~al~f~-SGy~AN 112 (388)
T COG0156 39 RKVLNFCSNDYLGLASHPELIEAAKAAIR-RYGVGAGGSRLISGTSDLHVELEE----ELADFLGAEAALLFS-SGFVAN 112 (388)
T ss_pred ceeEeeeccCcccccCCHHHHHHHHHHHH-HhCCCCCCcCcccCCcHHHHHHHH----HHHHHhCCCcEEEEc-ccchhH
Confidence 346678999999987 8899888885 677777777765 55777777888 999999999999999 999999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--C--CeEEEEcCCCCC
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--K--PKLIIAGASAYS 178 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~--~~liv~~~s~~~ 178 (1342)
..++.++++++|.|+.-. -.|.+....++..+. +.+.+.++ |+++|++++.+. . ...+|++.+.++
T Consensus 113 ~~~i~~l~~~~dli~~D~---lnHASiidG~rls~a--~~~~f~Hn-----D~~~Le~~l~~~~~~~~~~~~IvtegVfS 182 (388)
T COG0156 113 LGLLSALLKKGDLIFSDE---LNHASIIDGIRLSRA--EVRRFKHN-----DLDHLEALLEEARENGARRKLIVTEGVFS 182 (388)
T ss_pred HHHHHHhcCCCcEEEEec---hhhhhHHHHHHhCCC--cEEEecCC-----CHHHHHHHHHhhhccCCCceEEEEecccc
Confidence 999999999999999433 455666666666666 55666766 899999999762 2 234444465655
Q ss_pred ---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-----CCCCCC-CCCcEEEecCCccCCCCCeeEEEEechhHHHH
Q psy13354 179 ---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-----EYPNPV-PFADFITSTTHKSLRGPRGGFILMKKKYKKII 249 (1342)
Q Consensus 179 ---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-----~~~~~l-~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l 249 (1342)
..+|+++|+++|++||+++++||||+.|.+++. .+.+.. ...||+++|++|+| |..|||+.++..+.+++
T Consensus 183 MdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAl-Gs~Gg~v~g~~~~~d~L 261 (388)
T COG0156 183 MDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKAL-GSSGGYIAGSAALIDYL 261 (388)
T ss_pred CCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhh-cccCceeeCcHHHHHHH
Confidence 667999999999999999999999999998752 223333 23589999999999 88999999999999999
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHH
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKI 329 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~ 329 (1342)
.....++.+++...|..++++.+..+.+. ...+.++++.++..++++.+...|+.+ .+..++++++.+.++....++
T Consensus 262 ~~~ar~~ifStalpP~~aaa~~~al~~l~-~~~~~r~~L~~~~~~~~~~~~~~~~~~--~~s~s~I~pv~~gd~~~a~~~ 338 (388)
T COG0156 262 RNRARPFIFSTALPPAVAAAALAALRILE-EGPERRERLQELAAFFRSLLKALGLVL--LPSESPIIPVILGDEERALEA 338 (388)
T ss_pred HHhCCceeccCCCCHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHhcCCcc--CCCCCCeeeeEeCCHHHHHHH
Confidence 99999999999999999988888888876 555678999999999998887778876 346788999999887767788
Q ss_pred HHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
...++++ ||++.+..+|.+|.+ ..++|+++++.+|.
T Consensus 339 s~~l~~~-Gi~v~~i~~PTVp~g---tarlRi~lta~ht~ 374 (388)
T COG0156 339 SRALLEE-GIYVSAIRPPTVPKG---TARLRITLTAAHTE 374 (388)
T ss_pred HHHHHHC-CeeEeeecCCCCCCC---cceEEEEecCCCCH
Confidence 8888888 999999999999976 78999999998874
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=265.96 Aligned_cols=294 Identities=18% Similarity=0.237 Sum_probs=240.3
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
..|.+||||++|++++||+++++.+...+++|++++++||+||+|+|||++++++++.+.+
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~------------------- 69 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA------------------- 69 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-------------------
Confidence 5799999999999999999999999999999999999999999999999999999998752
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHH-HHHHHhhcCccCCceEEEeccCccC-CHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQ-LLEQTIYAPINARYKIYVIDEVHML-THHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~-ii~~~~~~p~~~~~rvviIDE~~~L-~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
++..++++. ..++.+++ +.+.+...|+.+++++|+|||+|.+ ..+..+.|..++++++.++.+|+++
T Consensus 70 ----------~~~~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 70 ----------EVLFVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred ----------cceEeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 456666665 23555655 3345556677788999999999999 6667788888999999999999999
Q ss_pred CCCCCChHHHhccEEEEEEcCCCHHHHHHHHH-------HHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q psy13354 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLC-------YILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS 609 (1342)
Q Consensus 537 ~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~-------~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~ 609 (1342)
+..+++.++|++||..+.|+.|+.++...|+. .++.++|+.++++++..+++.+.|++|.+++.++.... .
T Consensus 139 n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~--~ 216 (316)
T PHA02544 139 NNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS--T 216 (316)
T ss_pred CChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc--c
Confidence 99999999999999999999999988776644 44556899999999999999999999999999986553 4
Q ss_pred CCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhH
Q psy13354 610 EKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNY 689 (1342)
Q Consensus 610 ~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~ 689 (1342)
+.|+.+++..+. ...++++++++...+..++..... ..+.++..++..+...+..
T Consensus 217 ~~i~~~~l~~~~----~~~~~~l~~~l~~~d~~~~~~~~~---~~~~~~~~~l~~~~~~~~~------------------ 271 (316)
T PHA02544 217 GKIDAGILSEVT----NSDIDDVVEALKAKDFKAVRALAP---NYANDYASFVGKLYDELYP------------------ 271 (316)
T ss_pred CCCCHHHHHHhh----HHHHHHHHHHHHcCCHHHHHHHHH---HhccCHHHHHHHHHHHHHH------------------
Confidence 679998888765 678899999998888777665222 2255665555544433311
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 690 NEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 690 ~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
......+.++++.+.+.+..+..+.++++.+|.+++++|.
T Consensus 272 --------~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~le~~l~~~~~ 311 (316)
T PHA02544 272 --------QVTPPSIIRLIEIIGENNQYHGFAADQEIHLLYLLTQLML 311 (316)
T ss_pred --------hCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1234567789999999999999999999999999999873
|
|
| >PRK05574 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=268.42 Aligned_cols=309 Identities=14% Similarity=0.156 Sum_probs=260.9
Q ss_pred HHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCc
Q psy13354 400 SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTR 479 (1342)
Q Consensus 400 ~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~ 479 (1342)
.+.+...++++ +.+.|+|||++-+-+...++.+.+.....+ ....++..+++..
T Consensus 5 ~~~~~~~~~~~-~~~~~li~G~d~~l~~~~~~~i~~~~~~~~-----------------------~~~~~~~~~d~~~-- 58 (340)
T PRK05574 5 PEQLEKQLKKG-LAPLYLLYGDEPLLLQEAKDAIRAAARAQG-----------------------FDERNVFTFDGSE-- 58 (340)
T ss_pred HHHHHHHHhCC-CCceEEEEcCcHHHHHHHHHHHHHHHHcCC-----------------------CceeeEEEeecCC--
Confidence 35667778877 899999999998888888888887654211 0112445555543
Q ss_pred CHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH----HHHHHHHhhcCCCC--cEEEEEEeCCCC---CC---hHHHh
Q psy13354 480 GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH----AFNAMLKTLEEPPK--YIKFILATTEPQ---KI---PITVL 547 (1342)
Q Consensus 480 ~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~----~~~~Ll~~Le~p~~--~~vlIl~t~~~~---kl---~~~L~ 547 (1342)
.++.++++.+.+.|+|+++|+|+|++++.+... ....|.+++ +|++ .+++++.++..+ ++ .+++.
T Consensus 59 --~~~~~l~~~~~t~~lF~~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~ 135 (340)
T PRK05574 59 --TDWDDVLEACQSLPLFSDRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALK 135 (340)
T ss_pred --CCHHHHHHHhhccCccccCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHH
Confidence 248889999999999999999999999988643 345667777 5554 456666655544 33 67888
Q ss_pred ccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC-CCCCHHHHHHHhccCcH
Q psy13354 548 SRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS-EKITLNSMQEMLSIIDQ 626 (1342)
Q Consensus 548 sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~-~~It~e~V~~~v~~~~~ 626 (1342)
+++.+++|.+++..++..|+...+++.|+.++++++++|++.+++|+..+.++++|+..|++ +.||.++|++++....+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~ 215 (340)
T PRK05574 136 KKAVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSAR 215 (340)
T ss_pred hCceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhc
Confidence 89999999999999999999999999999999999999999999999999999999999974 44999999999999999
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccc----------CCchhHHHHHHHH
Q psy13354 627 KYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILI----------KDSPNYNEIIQLS 696 (1342)
Q Consensus 627 ~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~----------~~~~~~~~~~~~a 696 (1342)
.++|+++|++..++...++.+++.+...|++|+.++++|.++||+++.++...+.+. .+++..+.+.+++
T Consensus 216 ~~~f~l~dai~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~ 295 (340)
T PRK05574 216 FDVFDLVDAILAGKIKRALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRAL 295 (340)
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986654433 3445566678999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhhccC--CChhHHHHHHHHHhHc
Q psy13354 697 KKFNIEQIQLFYQISIHGRNELELA--PDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 697 ~~~s~~~L~~~l~~l~~~d~~lK~~--~~~~~~le~~ll~l~~ 737 (1342)
++||.++|.+++..|.++|.++|++ .+++..+|.+++++|.
T Consensus 296 ~~~s~~~L~~~l~~L~~~d~~iK~~~~~~~~~~le~~ii~l~~ 338 (340)
T PRK05574 296 QRLSLKQLKQAIQLLAETDYQIKTGYGGDKWLELELLLLKLAG 338 (340)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999976 6999999999999985
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=260.55 Aligned_cols=292 Identities=21% Similarity=0.241 Sum_probs=231.8
Q ss_pred chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEc-
Q psy13354 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMD- 474 (1342)
Q Consensus 396 q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~- 474 (1342)
|+.+++.|..++.+|+++|+|||+||+|+||+++|..+++.+.|+.+ .+|+.|++|..+..+.|||+..+.
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~--------~~~~~c~~c~~~~~g~HPD~~~i~~ 80 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGP--------DPAAAQRTRQLIAAGTHPDLQLVSF 80 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCC--------CCCCcchHHHHHhcCCCCCEEEEec
Confidence 67889999999999999999999999999999999999999999632 468889999999999999998884
Q ss_pred -cC-------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHH
Q psy13354 475 -AA-------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITV 546 (1342)
Q Consensus 475 -~~-------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L 546 (1342)
.. ...++++++++.+.+...|..+++||+|||++|.|+.++.|+|+|+||+||++++||+++++++++++||
T Consensus 81 ~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTI 160 (319)
T PRK08769 81 IPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATI 160 (319)
T ss_pred CCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHH
Confidence 22 1235889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcH
Q psy13354 547 LSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQ 626 (1342)
Q Consensus 547 ~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~ 626 (1342)
+|||+.+.|.+++.++..+||.+ .| +++..+..++..++|++..+...++.-.. +. .
T Consensus 161 rSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~~~~~--------~~---------r 217 (319)
T PRK08769 161 RSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLREDGL--------AL---------R 217 (319)
T ss_pred HhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhcCchH--------HH---------H
Confidence 99999999999999999999864 34 45666677889999999999877632100 00 0
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHH
Q psy13354 627 KYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQL 706 (1342)
Q Consensus 627 ~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~ 706 (1342)
..+.+.+..+..+.. .++.+...+..... . ..+...+++++.++.. ...+ +++ ....|..
T Consensus 218 ~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~--~---~~l~~~~~Dll~~~~~-~~~~-~~~------------~~~~L~~ 277 (319)
T PRK08769 218 RAVAQDLEQIASGRA-GAVDVAQRWTNDGQ--A---DQRLRHAADLALAQAS-AGLT-DPS------------RLHKLAT 277 (319)
T ss_pred HHHHHHHHHhccCcc-cHHHHHHHHccCCc--H---HHHHHHHHHHHHHhcC-Cccc-Chh------------hHHHHHH
Confidence 011122223333332 35555555544322 1 5788889999988873 2211 111 4566777
Q ss_pred HHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 707 FYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 707 ~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+...+.+....+..+.|+++.+|.+++....+
T Consensus 278 ~~~~l~~~~~~~~~~lN~~L~le~lll~~~~~ 309 (319)
T PRK08769 278 WFDAANRTRDLLRTTVRADLAVTELLLAWREG 309 (319)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 77778888888888899999999999998764
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-29 Score=283.82 Aligned_cols=255 Identities=18% Similarity=0.158 Sum_probs=197.8
Q ss_pred cCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcc--hHHHHHHHHHcCC
Q psy13354 821 LNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFS--TTSLAKRLKELQL 897 (1342)
Q Consensus 821 ~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~--s~~l~~~l~~~g~ 897 (1342)
.||+|+.. +|.++..++ ....|.|.+|.++.||++||||| |.|+|.+|++|..| +..+++++.++-+
T Consensus 124 ~gV~i~~~~~v~~v~~~~-~~f~l~t~~g~~i~~d~lilAtG---------G~S~P~lGstg~gy~iA~~~G~~I~~~rp 193 (408)
T COG2081 124 LGVTIRTRSRVSSVEKDD-SGFRLDTSSGETVKCDSLILATG---------GKSWPKLGSTGFGYPIARQFGHTITPLRP 193 (408)
T ss_pred cCcEEEecceEEeEEecC-ceEEEEcCCCCEEEccEEEEecC---------CcCCCCCCCCchhhHHHHHcCCccccCcc
Confidence 78999555 799998766 56788999998999999999999 99999999987766 4445555554444
Q ss_pred CccccccCCC--cccccCcccccccee-------ecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccC
Q psy13354 898 SHGRLKTGTP--PRIDKRTIDFSKMEE-------QIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNS 968 (1342)
Q Consensus 898 ~~~~~~~~~~--~r~~~~si~~~~~~~-------~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~ 968 (1342)
.+++|....| -++.+.|++-..+.. +.|| ++|||||++||+++ |+|.|... .+.+.-....+|+.
T Consensus 194 alvpft~~~~~~~~l~gls~~~v~~~v~~~~g~~~~g~-~LfTh~GiSGPavl---~~Ss~~~~--~~~~~~~~i~iDll 267 (408)
T COG2081 194 ALVPFTLDESFLERLAGLSLKSVPLSVTAGKGITFQGD-LLFTHRGLSGPAVL---QLSSYWRL--LEKKGGATLSIDLL 267 (408)
T ss_pred ccCCccCCHHHHHHhcCCcccceEEEEecCCCceeecc-eEEEecCCcHHHHH---HHHHHHHH--hccCCCceEEEecC
Confidence 4444444433 355556655543333 4579 99999999999999 99999994 22222356778999
Q ss_pred CCCc-cccccccCCCCCCcccccccCCCCCccceeEeecccccceeecCccccCCCHHHHHHHHHhcccc----------
Q psy13354 969 PIFS-GKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGM---------- 1037 (1342)
Q Consensus 969 p~~~-~~~~~~g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gl---------- 1037 (1342)
|.++ +++...--| .-.+|-+++..+...+..+.+..++...| ++....+++++++.++...|+.+
T Consensus 268 P~~~~~~l~~~l~~---~~~~kslkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~ 343 (408)
T COG2081 268 PDVDAEELLRELRR---ANPKKSLKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKAWPITPNGTEPY 343 (408)
T ss_pred CCCCHHHHHHHHHh---hChhhHHHHHHHHHhhhHHHHHHHHhccC-CCcchhhcCHHHHHHHHHHHhcCeeeccCCccc
Confidence 9998 433211111 11133344444455666677778888888 89999999999999999999998
Q ss_pred cceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHHH------HHHHHHHHHHHHHHHh
Q psy13354 1038 KNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEE------AASQGLLAGLNAALFS 1101 (1342)
Q Consensus 1038 e~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~e------A~~~G~~Ag~na~~~~ 1101 (1342)
++|+||.|||++++ |||+ |||+|.+|||||||||+|++|||+ |+|+|++||.+++.++
T Consensus 344 ~~A~VT~GGV~~~e--id~k----Tmesk~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 344 REAEVTAGGVDTKE--IDSK----TMESKKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred ceeEEecCceehhh--cCHH----HHHhhcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999 9999 999999999999999999999995 9999999999998653
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-26 Score=268.43 Aligned_cols=324 Identities=15% Similarity=0.164 Sum_probs=250.1
Q ss_pred CceeeeecCC-C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHHH
Q psy13354 28 NNIELIASEN-Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n-~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~A 101 (1342)
+.|.+..|++ + .|+.+++++.+++.+.. . .|....+..+|++++++++.+.+|.+ ..+++++|+++|
T Consensus 29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~------~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~a 101 (393)
T COG0436 29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGG------T-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEA 101 (393)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHHhccc------C-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHH
Confidence 4688888875 3 44449999888875311 1 23367778899999999999998844 325666599999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
+..++.++++|||+|+++++.| .++...+...|..+..+++... .+|.+|++.+++++++ +.+++++++|+||
T Consensus 102 l~~~~~a~~~pGDeVlip~P~Y---~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln~P~NPTG 177 (393)
T COG0436 102 LFLAFLALLNPGDEVLIPDPGY---PSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP-KTKAIILNSPNNPTG 177 (393)
T ss_pred HHHHHHHhcCCCCEEEEeCCCC---cCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc-cceEEEEeCCCCCcC
Confidence 9999999999999999777544 4555666778884444443333 4899999999999998 6677777777777
Q ss_pred ---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-----CcEEEecCCccCCCCCe---eEEEEe-chhH
Q psy13354 179 ---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-----ADFITSTTHKSLRGPRG---GFILMK-KKYK 246 (1342)
Q Consensus 179 ---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-----~Divv~S~sK~l~gp~G---G~iv~~-~~l~ 246 (1342)
+...+++|+++|++||++||+||+|....+.+..+.+.+.. ..+.+.||||.+ +++| ||++++ ++++
T Consensus 178 av~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~-~mtGwRvG~~v~~~~~l~ 256 (393)
T COG0436 178 AVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTY-GMTGWRIGWVVGPPEELI 256 (393)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccc-cccccceeEeecChHHHH
Confidence 33379999999999999999999998766644334444432 247789999999 8888 999999 7788
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCCeEEEEEccCCC
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKSHIILVDLRNKK 324 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~-~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~~~v~i~~~~~~ 324 (1342)
+.+.. ...+...+++.+.+.|+..++..... ...+..++.+.++++.+.+.|.+.+ +.+..++.+++++|++++...
T Consensus 257 ~~~~~-~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~~ 335 (393)
T COG0436 257 AALRK-LKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELL 335 (393)
T ss_pred HHHHH-HHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCCC
Confidence 87774 34455556778888888877765421 3566677889999999999999865 887665778999999999877
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
++.+++..|++++||.+.|+..|+.+.+ .+++|++++...
T Consensus 336 d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g---~~~vRis~~~~~ 375 (393)
T COG0436 336 DSEEFAKKLLEEAGVAVVPGSGFGEPPG---EGYVRLSLATSE 375 (393)
T ss_pred CHHHHHHHHHHhCCEEEecccccCCCCC---CCeEEEEEecCH
Confidence 7889999999999999999988887532 578999988764
|
|
| >TIGR01128 holA DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-25 Score=253.84 Aligned_cols=265 Identities=15% Similarity=0.156 Sum_probs=234.8
Q ss_pred ccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-HHHHHHHHHhhcCCCCcEEEEEEeCCCCC---Ch
Q psy13354 468 MDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-HHAFNAMLKTLEEPPKYIKFILATTEPQK---IP 543 (1342)
Q Consensus 468 ~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-~~~~~~Ll~~Le~p~~~~vlIl~t~~~~k---l~ 543 (1342)
.++..+++.. .++.++.+.+.+.|+|+++|+|+|++++.+. ....+.|.++++++++++++|+.++..++ +.
T Consensus 19 ~~~~~~~~~e----~~~~~l~~~~~~~slf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~ 94 (302)
T TIGR01128 19 FNVFRIDGEE----FDWNQLLEEAQTLPLFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLT 94 (302)
T ss_pred heeeeeccCC----CCHHHHHHHhhccCcccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHH
Confidence 3566666553 2456688999999999999999999999876 45679999999999999999998876553 22
Q ss_pred HHHhc--cEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC-CCCCHHHHHHH
Q psy13354 544 ITVLS--RCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS-EKITLNSMQEM 620 (1342)
Q Consensus 544 ~~L~s--R~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~-~~It~e~V~~~ 620 (1342)
+.+.. +|.++.|.+++..++..|+.+.++++|+.++++++++|++.++||++.+.++++|+..|++ +.||.++|+++
T Consensus 95 k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~ 174 (302)
T TIGR01128 95 KWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEA 174 (302)
T ss_pred HHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHH
Confidence 34444 9999999999999999999999999999999999999999999999999999999999974 46999999999
Q ss_pred hccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc----------cCCchhHH
Q psy13354 621 LSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL----------IKDSPNYN 690 (1342)
Q Consensus 621 v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~----------~~~~~~~~ 690 (1342)
+....+.++|++++++..++...++.+++.+..+|++|..++..|.++||+++.++...+.+ ..+++..+
T Consensus 175 ~~~~~~~~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~~k~~~~~~~~~~~i~~~~~~~~~~~~ 254 (302)
T TIGR01128 175 VSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAQQGGPLAQLASKLGIWPYRRK 254 (302)
T ss_pred HhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998654443 23455667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhhcc--CCChhHHHHHHHHHhH
Q psy13354 691 EIIQLSKKFNIEQIQLFYQISIHGRNELEL--APDEYAGFTMTLLRML 736 (1342)
Q Consensus 691 ~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~--~~~~~~~le~~ll~l~ 736 (1342)
.+.+++++||.++|.+++..|.++|..+|+ +.|++..+|.+++++|
T Consensus 255 ~~~~~~~~~s~~~L~~~l~~l~~~d~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 255 LALKALRRLSLAKLEQALQELAEADLQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHhC
Confidence 788999999999999999999999999994 5799999999999987
|
subunit around DNA forming a DNA sliding clamp. |
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-29 Score=297.28 Aligned_cols=264 Identities=21% Similarity=0.232 Sum_probs=179.2
Q ss_pred HHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcc--hHHH
Q psy13354 812 AIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFS--TTSL 888 (1342)
Q Consensus 812 ~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~--s~~l 888 (1342)
.+++.+++ .+++|+.+ +|.+|..+++.+.+|+++++..+.||+|||||| |.++|.+|++|++| +..+
T Consensus 114 ~L~~~l~~-~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtG---------G~S~p~~GS~G~gy~~a~~l 183 (409)
T PF03486_consen 114 ALLEELKR-LGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATG---------GKSYPKTGSDGSGYRIAKKL 183 (409)
T ss_dssp HHHHHHHH-HT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE-------------SSSGGGT-SSHHHHHHHHT
T ss_pred HHHHHHHH-cCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecC---------CCCccccCCCcHHHHHHHHC
Confidence 33444433 68999655 799999999999999998888999999999999 99999999998887 6666
Q ss_pred HHHHHHcCCCccccccCCCc----ccccCcccc-------ccceeecCCCCCCCcccccCCCCCCCCccccchhhcchhH
Q psy13354 889 AKRLKELQLSHGRLKTGTPP----RIDKRTIDF-------SKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKT 957 (1342)
Q Consensus 889 ~~~l~~~g~~~~~~~~~~~~----r~~~~si~~-------~~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~ 957 (1342)
+|++.+.-+.++++++..++ .+.|-+++- .....+.|| ..|||+|+|||+++ ++|.|+.+... .
T Consensus 184 Gh~i~~~~PaL~~l~~~~~~~~~~~l~Gv~~~~~~~~~~~~~~~~~~Ge-llfT~~GiSGp~il---~lS~~~~~~l~-~ 258 (409)
T PF03486_consen 184 GHTITPPYPALVPLKCDEPWLFFKELSGVRLKAVISLLDGKKKASETGE-LLFTHYGISGPAIL---QLSRFIARALN-K 258 (409)
T ss_dssp T--EEEEEEES--EE--HHHHHTGGGTT-EEEEEEEEE-ECTCEEEEEE-EEE-SSEEESHHHH---HHTTTHHHHHH--
T ss_pred CCcEecCCCccCCeeecchhhhhhhhCCCceeeEEEEeccCCccceeee-EEEECCccchHHHH---HHHHHHHHHHH-h
Confidence 66666666666666666552 355555443 344558899 99999999999999 99999965432 2
Q ss_pred HHHHHhhcccCCCCc-cccccccCCCCCCcccccccCCCCCccceeEeeccccccee-ecCccccCCCHHHHHHHHHhcc
Q psy13354 958 HNIIRSEFKNSPIFS-GKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEY-YPNGISTSLPFEAQIELVQSID 1035 (1342)
Q Consensus 958 ~~~i~~~~~~~p~~~-~~~~~~g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~-~~~g~~~~l~~~~q~~~~~~i~ 1035 (1342)
+.-....+|+.|.++ ++++....+-..+..+|-++.......+-.|.+..+....+ .++....++++++..++++.|+
T Consensus 259 ~~~~~i~id~~p~~~~e~l~~~l~~~~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~~l~~~~~~~L~~~lk 338 (409)
T PF03486_consen 259 KKKVEISIDFLPDLSEEELEELLQERKEKNPKRTLKNFLKGLLPKRLALALLKRAGIKDPDKKVSELSKKERNRLANLLK 338 (409)
T ss_dssp -TTEEEEEESSTTS-HHHHHHHHHHHHHHTTTSBHHHHHTTTS-HHHHHHHHHHTTS-STTSBGGGS-HHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCCCccccchhhcCHHHHHHHHHHHH
Confidence 233577899999998 33432221111111111111112223334466667777777 8888999999999999999998
Q ss_pred cc----------cceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHHH------HHHHHHHHHHH
Q psy13354 1036 GM----------KNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEE------AASQGLLAGLN 1096 (1342)
Q Consensus 1036 gl----------e~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~e------A~~~G~~Ag~n 1096 (1342)
.+ ++|+||+||+++++ |||+ |||||.+||||||||++|++|.++ ||+||++||.|
T Consensus 339 ~~~~~v~g~~~~~~A~VT~GGV~~~e--id~~----TmeSk~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~~ 409 (409)
T PF03486_consen 339 RFPFTVTGTGGFDKAQVTAGGVDLKE--IDPK----TMESKLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGKY 409 (409)
T ss_dssp CEEEEESEE--TTT-SEEEEEE-GGG--B-TT----T-BBSSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH-
T ss_pred hCceeecccCCCceEEEECCCcCHHH--CCHh----hhcccCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhCC
Confidence 87 99999999999999 9999 999999999999999999999885 99999999975
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=242.08 Aligned_cols=269 Identities=19% Similarity=0.217 Sum_probs=217.1
Q ss_pred hhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCC
Q psy13354 398 HISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS 477 (1342)
Q Consensus 398 ~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~ 477 (1342)
..++.|.+++.+|+++|+|||+||+|+||+++|..+|+.+.|... ...|..+..+.|||+..+....
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~-------------~~~c~~~~~~~HPD~~~i~p~~ 70 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETS-------------PEAAYKISQKIHPDIHEFSPQG 70 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCC-------------ccHHHHHhcCCCCCEEEEecCC
Confidence 457899999999999999999999999999999999999998521 1358899999999998885432
Q ss_pred ---CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEEE
Q psy13354 478 ---TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFN 554 (1342)
Q Consensus 478 ---~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~ 554 (1342)
..++++++++.+.+...|+.+++||+||+++|.|+.+++|+|+|+||+||++++||++|++++++++||+|||+.+.
T Consensus 71 ~~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~ 150 (290)
T PRK05917 71 KGRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIH 150 (290)
T ss_pred CCCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEE
Confidence 24789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHHH
Q psy13354 555 LKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILD 634 (1342)
Q Consensus 555 ~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~d 634 (1342)
|+++. + ..++++.+..++..++|++... .+.+++... .+
T Consensus 151 ~~~~~-------------~--~~i~~~~~~~l~~~~~g~~~~~--~~~~~l~~~-----------------~~------- 189 (290)
T PRK05917 151 IPMEE-------------K--TLVSKEDIAYLIGYAQGKESVT--EVGQIVKGS-----------------AD------- 189 (290)
T ss_pred ccchh-------------c--cCCCHHHHHHHHHHhCCChhHH--HHHHHHhcc-----------------hH-------
Confidence 98861 1 1378889999999999999611 111111000 00
Q ss_pred HHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc-cCCchhHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy13354 635 ALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL-IKDSPNYNEIIQLSKKFNIEQIQLFYQISIH 713 (1342)
Q Consensus 635 al~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~-~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~ 713 (1342)
...... ++....+|..+...||+++..+...+.. ..+.+....+.+ ++...+..+++.+.+
T Consensus 190 --------~~~~~~------re~~~~~L~~ll~~~RD~l~~~~~~~~~~l~~~d~~~~l~~----~~~~~l~~~i~~i~~ 251 (290)
T PRK05917 190 --------TDKQVL------RDKTKAMLEVLLQLFRDRFLLALKVPASALAYPDLLKEILT----LPVLPLEKVLSIIER 251 (290)
T ss_pred --------HHHHHH------HHHHHHHHHHHHHHHHHHHHHHcCCchhhhccHHHHHHHHh----cccccHHHHHHHHHH
Confidence 000000 3334678899999999999888765543 445555555544 345558899999999
Q ss_pred HHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 714 GRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 714 ~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+.+.++...++++.+|.+++++..+
T Consensus 252 a~~~l~~N~N~~l~le~l~l~l~~~ 276 (290)
T PRK05917 252 AVQALDNSSSAPSCLEWVALQLWSL 276 (290)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999865
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-24 Score=237.09 Aligned_cols=281 Identities=21% Similarity=0.311 Sum_probs=209.2
Q ss_pred cchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEc
Q psy13354 395 GQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMD 474 (1342)
Q Consensus 395 Gq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~ 474 (1342)
.|..+++.|.+++.+++++|+|||+|| .||+++|+.+|+.+.|.... ...+|+.|.+|..+..+.|||+..+.
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~-----~~~~Cg~C~~C~~i~~~~HPD~~~i~ 78 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKE-----GVLPCGHCRSCRLIEQGEFSDVTVIE 78 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHhcCCCCCeeeec
Confidence 578899999999999999999999996 68999999999999997532 23589999999999999999999987
Q ss_pred cC-CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEE
Q psy13354 475 AA-STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQF 553 (1342)
Q Consensus 475 ~~-~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i 553 (1342)
.. ...+++++++++..+...|..+.+||+|||++|.|+.++.|+|||+||+||++++||++|++++++++||+|||+.+
T Consensus 79 p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i 158 (290)
T PRK07276 79 PQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIF 158 (290)
T ss_pred CCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceee
Confidence 64 33578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHH
Q psy13354 554 NLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQIL 633 (1342)
Q Consensus 554 ~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~ 633 (1342)
.|++ +.+++.+|+. ++|+ +.+..+.++..+ |++..++..++.-- ..+ ....+..+.
T Consensus 159 ~f~~-~~~~~~~~L~----~~g~--~~~~a~~la~~~-~s~~~A~~l~~~~~-----------~~~-----~~~~~~~~~ 214 (290)
T PRK07276 159 HFPK-NEAYLIQLLE----QKGL--LKTQAELLAKLA-QSTSEAEKLAQNKK-----------FLE-----LIDQAERFV 214 (290)
T ss_pred eCCC-cHHHHHHHHH----HcCC--ChHHHHHHHHHC-CCHHHHHHHhCChh-----------HHH-----HHHHHHHHH
Confidence 9977 7777777764 4564 455556666555 57888887752100 000 011122333
Q ss_pred HHHHccChHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHHHH
Q psy13354 634 DALAEQDGNLILSIANKIEIYNLS---YSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQI 710 (1342)
Q Consensus 634 dal~~~~~~~al~~l~~L~~~~~~---~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~ 710 (1342)
+.+...+...++.. .++.....+ -..++..|..++..- ++.+++...+..
T Consensus 215 ~~l~~~~~~~~l~~-~~l~~~~~~~e~q~~~l~~l~~~~~~~--------------------------~~~~~~~~~L~~ 267 (290)
T PRK07276 215 TILLKDKDEAYLQV-ARLVQLADEKEEQDQVLTLLTLLLAQE--------------------------RMQVNVRTQLEA 267 (290)
T ss_pred HHhccChHHHHHHH-HHHHHhhhcHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHH
Confidence 33333332322222 333333222 233444444333111 112445666888
Q ss_pred HHHHHHhhccCCChhHHHHHHHH
Q psy13354 711 SIHGRNELELAPDEYAGFTMTLL 733 (1342)
Q Consensus 711 l~~~d~~lK~~~~~~~~le~~ll 733 (1342)
..+.+.......+....+|.+++
T Consensus 268 ~~~~r~~w~~Nv~~~~~le~l~l 290 (290)
T PRK07276 268 VYQARKMWQSNVSFQNALEYMVL 290 (290)
T ss_pred HHhHHHHHHhccCHHHHHHHHhC
Confidence 88888888888889999998764
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=253.33 Aligned_cols=255 Identities=26% Similarity=0.386 Sum_probs=212.5
Q ss_pred HHhhccCCCCccccccchhhHHH---HHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKS---LINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~---L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
+|++||||++|++++||++++.. |.+.+..+..++ ++|+||+|+|||++|+.+++.+.+
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~-ilL~GppGtGKTtLA~~ia~~~~~----------------- 62 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSS-MILWGPPGTGKTTLARIIAGATDA----------------- 62 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCce-EEEECCCCCCHHHHHHHHHHHhCC-----------------
Confidence 58999999999999999999876 999998887765 789999999999999999998752
Q ss_pred cchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 457 SVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
++..+++. ..++++++++++.+......+++++|+|||+|.++...++.|++++++ ..+++|.++
T Consensus 63 ------------~~~~l~a~-~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~at 127 (413)
T PRK13342 63 ------------PFEALSAV-TSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGAT 127 (413)
T ss_pred ------------CEEEEecc-cccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeC
Confidence 46667665 345678888888876655556788999999999999999999999997 356667666
Q ss_pred CCC--CCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhc--CC-CcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy13354 537 TEP--QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKE--NI-KFETSALNLIATGAQGSMRDALSLTDQAINYSSEK 611 (1342)
Q Consensus 537 ~~~--~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~--g~-~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~ 611 (1342)
+.. ..+.++|.|||.++.|.+++.+++..|+.+.+... ++ .+++++++.+++.++||+|.+++.++.+... ...
T Consensus 128 t~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~-~~~ 206 (413)
T PRK13342 128 TENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG-VDS 206 (413)
T ss_pred CCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCC
Confidence 543 36788999999999999999999999999988763 54 8999999999999999999999999998776 667
Q ss_pred CCHHHHHHHhccCc------HHHHHHHH----HHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy13354 612 ITLNSMQEMLSIID------QKYLIQIL----DALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLL 668 (1342)
Q Consensus 612 It~e~V~~~v~~~~------~~~if~l~----dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~ 668 (1342)
|+.+++.+++.... .+..++++ +++...|.+.++.++..|+..|++|..|...|...
T Consensus 207 It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~ 273 (413)
T PRK13342 207 ITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVII 273 (413)
T ss_pred CCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999987421 12344544 45555899999999999999999999887766553
|
|
| >PF13932 GIDA_assoc_3: GidA associated domain 3; PDB: 3CES_C 3CP2_A 3G05_A 3CP8_A 2ZXI_B 2ZXH_A | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-26 Score=202.50 Aligned_cols=72 Identities=60% Similarity=0.955 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHhhhcCCCCCHHHHHHHHH
Q psy13354 1258 LQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLI 1329 (1342)
Q Consensus 1258 ~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~a~ri~Gv~p~~i~~l~~ 1329 (1342)
+||+|||+||++++++++++|+++||+||||++|+|||+|+||||+++||.|||||+||||||||||..|++
T Consensus 1 iKY~~Yi~rq~~~i~~~~~~e~~~iP~~~dy~~i~~LS~E~~ekL~~~rP~Ti~~A~rI~GvtPa~i~~Llv 72 (72)
T PF13932_consen 1 IKYEGYIERQQQEIERLRKDESLKIPEDFDYSKIPGLSNEAREKLEKIRPRTIGQASRIPGVTPAAISLLLV 72 (72)
T ss_dssp HHTHHHHHHHHHHCHHHHHHHTSB--TTS-CCCSTT--CHHHHHHHHH--SCHHHHTTSTTS-HHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCCCChhhccccHHHHHHHHHhcCCCCHHHHHhCCCCCHHHHHHHhC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999984
|
|
| >KOG0257|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=240.26 Aligned_cols=335 Identities=16% Similarity=0.150 Sum_probs=245.0
Q ss_pred ccccccccchHHHHHHHHHHHhccCceeeeecC-CCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHH
Q psy13354 4 KNENLSKIDPKIWEIILKEKQRQNNNIELIASE-NYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINR 81 (1342)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~-n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~ 81 (1342)
.+.+|+...|.++-.+..........-.|..|. ++.+|. +.+++.+.+.+. ....|+.+.++.+|.+.+++.
T Consensus 8 ~~~~l~~~~~~vw~e~~~la~e~~~~~~LgqGfp~~~~P~fv~ea~~~~~~~~------~~~qYt~~~G~p~L~~aL~k~ 81 (420)
T KOG0257|consen 8 RNRNLSTSKPYVWTEINRLAAEHKVPNPLGQGFPDFPPPKFVTEAAKNAAKEP------STNQYTRGYGLPQLRKALAKA 81 (420)
T ss_pred ccccccccCCcHHHHHHHHHHhcCCCCcccCCCCCCCCcHHHHHHHHHHhccc------hhccccccCCchHHHHHHHHH
Confidence 356777777888888765544333222266664 555555 888888776421 223455566677888989999
Q ss_pred HHHHhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec------CCCCC
Q psy13354 82 LKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG------LNKKE 151 (1342)
Q Consensus 82 la~~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~------~~~~~ 151 (1342)
++.++|.. +.++++.++.+|+..++++++++||+|++..+.+.++ .....+.|....+++.. ...+|
T Consensus 82 ~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y---~~~~~maG~tpv~v~~~~~~g~~~s~~~ 158 (420)
T KOG0257|consen 82 YSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCY---IPQVVMAGGTPVFVPLKPKEGNVSSSDW 158 (420)
T ss_pred HHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhh---hhHHhhcCCcceeeccccccccccCccc
Confidence 99988754 5555665888999999999999999999877655554 44556667655566554 34679
Q ss_pred CCCHHHHHHHHHhcCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-----Cc
Q psy13354 152 KIDYKKVEYLAKKNKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-----AD 221 (1342)
Q Consensus 152 ~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-----~D 221 (1342)
.+|.++++.++++. +++|+++.|+|| +...|++|+++|++||+++|+||+|....+.+..+...... ..
T Consensus 159 ~~D~~~le~~~t~k-Tk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ert 237 (420)
T KOG0257|consen 159 TLDPEELESKITEK-TKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERT 237 (420)
T ss_pred cCChHHHHhhccCC-ccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheE
Confidence 99999999999975 566666666666 44479999999999999999999999877766555543332 45
Q ss_pred EEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhcc-------chHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLK-------PDFKIYQKQVVKN 291 (1342)
Q Consensus 222 ivv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~-------~~~~~~~~~l~~~ 291 (1342)
+-++|++|+| |.+| ||+++++.+...+........+.++ ++.+.|.+.++...+. .....+.+.++++
T Consensus 238 itvgS~gKtf-~~TGWrlGW~igp~~L~~~~~~vh~~~~~~~~-Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~k 315 (420)
T KOG0257|consen 238 ITVGSFGKTF-GVTGWRLGWAIGPKHLYSALFPVHQNFVFTCP-TPIQEASAAAFALELACLQPGGSYFITELVKEYKEK 315 (420)
T ss_pred EEecccccee-eeeeeeeeeeechHHhhhhHHHHhhccccccC-cHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHH
Confidence 7899999999 8999 9999988888887765444444433 5666666655544431 2344588999999
Q ss_pred HHHHHHHHHhCCcEEeeCCCCCeEEEEEcc--------C----CCCCHHHHHHHHHHCCceeeeccCCCCCC
Q psy13354 292 AKILSKILDQRGIRIVSGGTKSHIILVDLR--------N----KKITGKIAESILESANIICNKNSIPNDPE 351 (1342)
Q Consensus 292 a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~--------~----~~~~~~~~~~ll~~~GI~v~~~~~p~~~~ 351 (1342)
++.+.+.|.+.|+++. .|.+++++|++++ + ...+..+...++++.|+.+-|.+.++...
T Consensus 316 rdil~k~L~~lg~~v~-~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~ 386 (420)
T KOG0257|consen 316 RDILAKALEELGLKVT-GPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSRE 386 (420)
T ss_pred HHHHHHHHHhcCCccc-cCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCch
Confidence 9999999999999975 4788999999997 1 12345678899999999999887777643
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=236.19 Aligned_cols=292 Identities=19% Similarity=0.220 Sum_probs=223.1
Q ss_pred hhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCc-cEEEEcc
Q psy13354 397 NHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFM-DYIEMDA 475 (1342)
Q Consensus 397 ~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~-d~~~i~~ 475 (1342)
+.+++.+.+++++|+++|+|||+|++|+||+++++.+++.+.|..... +..+.|+ ++..++.
T Consensus 2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~-----------------~~~~~~p~n~~~~d~ 64 (299)
T PRK07132 2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITN-----------------LNEQELPANIILFDI 64 (299)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC-----------------CCCCCCCcceEEecc
Confidence 467889999999999999999999999999999999999999853211 1223355 5666652
Q ss_pred -CCCcCHHHHHHHHHHHhhcCcc-CCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEE
Q psy13354 476 -ASTRGINEMAQLLEQTIYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQF 553 (1342)
Q Consensus 476 -~~~~~~~~i~~ii~~~~~~p~~-~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i 553 (1342)
....++++++++++.+...|+. +++||+|||+++.++.++.|+|+++||+||++++||+++++++++++||+|||+++
T Consensus 65 ~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~ 144 (299)
T PRK07132 65 FDKDLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVF 144 (299)
T ss_pred CCCcCCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEE
Confidence 2345678899988888888866 69999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHH
Q psy13354 554 NLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQIL 633 (1342)
Q Consensus 554 ~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~ 633 (1342)
+|.+++++++.+||.+. + ++++....++..++ ++..++..+..- ..+..+ .+.+++
T Consensus 145 ~f~~l~~~~l~~~l~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~~~--------~~~~~~---------~~~~~l 200 (299)
T PRK07132 145 NVKEPDQQKILAKLLSK----N--KEKEYNWFYAYIFS-NFEQAEKYINKE--------SENLLK---------KFEEAL 200 (299)
T ss_pred ECCCCCHHHHHHHHHHc----C--CChhHHHHHHHHcC-CHHHHHHHHhcC--------CHHHHH---------HHHHHH
Confidence 99999999999998642 3 67777888887777 599888775321 111111 122333
Q ss_pred HHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc-cCCchhHHHHHHHHhcCCHHHHHHHHHHHH
Q psy13354 634 DALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL-IKDSPNYNEIIQLSKKFNIEQIQLFYQISI 712 (1342)
Q Consensus 634 dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~-~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~ 712 (1342)
..+.. +....+...+.... ++....++..+..++|+++..+...... ..+. ...+.+++ +|..+| ++.+.
T Consensus 201 ~~~~~-~~~~l~~~~~~~~~-ke~~~~ll~~l~~~~rd~l~~~~~~~~~~i~~~--~~~i~~~~--~s~~~l---i~~i~ 271 (299)
T PRK07132 201 NKSLK-EKYELILFLNKKLT-KENALFLLKLLKFFFKSIFANKKKKNPKNIKVA--FSKKKKFK--IEFFEL---ITIID 271 (299)
T ss_pred HHhhh-hHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHHHHHhccCChHhHhhH--HHHHHHHh--cCHHHH---HHHHH
Confidence 33322 22223333333333 5566778999999999999888754432 2222 45666666 788777 88889
Q ss_pred HHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 713 HGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 713 ~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
++...++...|+++++|.+++++..+
T Consensus 272 ~~~~~L~~N~N~~l~~e~lll~l~e~ 297 (299)
T PRK07132 272 EFLNSLETNENFNLQKQAFLVKIYEI 297 (299)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 99999999999999999999998653
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=234.13 Aligned_cols=186 Identities=33% Similarity=0.523 Sum_probs=170.0
Q ss_pred HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccC-CCc
Q psy13354 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA-STR 479 (1342)
Q Consensus 401 ~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~-~~~ 479 (1342)
+.|.+.+++++++|+|||+||+|+|||++++.+++.+.|... ....+|+.|.+|..+..+.++|+..+... ...
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~-----~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~ 76 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQP-----GGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSI 76 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCC-----CCCCCCCCCHHHHHHHcCCCCcEEEeccccCcC
Confidence 568899999999999999999999999999999999998632 23468999999999999999998877654 245
Q ss_pred CHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcCCC
Q psy13354 480 GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559 (1342)
Q Consensus 480 ~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~ 559 (1342)
++++++++++.+...|++++++||||||+|.++.+.++.|++++|+|+++++||++++++.++.++++|||.+++|.+++
T Consensus 77 ~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~ 156 (188)
T TIGR00678 77 KVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS 156 (188)
T ss_pred CHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence 67899999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHH
Q psy13354 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDA 597 (1342)
Q Consensus 560 ~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a 597 (1342)
.+++.+||.+. | +++++++++++.++||+|.+
T Consensus 157 ~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 157 EEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 99999999875 4 78999999999999999864
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-24 Score=250.57 Aligned_cols=313 Identities=23% Similarity=0.261 Sum_probs=238.3
Q ss_pred ceeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.+..++++||++.. ++++..+++. +|+.+..+++.+.+ ...+.++|+ .+++++|.+.+++++ +|+.|+.
T Consensus 103 ~~l~FsSndYLGL~~~p~v~~a~~~ai~-~yG~g~~gSrl~~G~~~~h~~LE~----~LA~f~g~e~all~s-SGy~AN~ 176 (476)
T PLN02955 103 KLLLFSGNDYLGLSSHPTISNAAANAAK-EYGMGPKGSALICGYTTYHRLLES----SLADLKKKEDCLVCP-TGFAANM 176 (476)
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHH-HcCCCCCCcCccccChHHHHHHHH----HHHHHHCCCcEEEEC-ChHHHHH
Confidence 56689999999987 8999888885 78878777777654 566667777 999999999999999 9999999
Q ss_pred HHHHHcc--------------CCCCEEEEeeccCCccchhhHHhhhCC--ceeEEEEecCCCCCCCCHHHHHHHHHhcC-
Q psy13354 104 AVFFSVL--------------NPGDTIMGMSLQEGGHLTHGMMLNMSG--KWFNSICYGLNKKEKIDYKKVEYLAKKNK- 166 (1342)
Q Consensus 104 ~al~al~--------------~pGD~Vlv~~~~~~~~~s~~~~~~~~g--~~~~~v~~~~~~~~~id~e~Le~~i~~~~- 166 (1342)
.++.++. +.+|.|+.- ...|.+....++... .+..++.++++ |+++++++++..+
T Consensus 177 ~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D---~~~HaSI~dG~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~~~ 248 (476)
T PLN02955 177 AAMVAIGSVASLLAASGKPLKNEKVAIFSD---ALNHASIIDGVRLAERQGNVEVFVYRHC-----DMYHLNSLLSSCKM 248 (476)
T ss_pred HHHHHHhhccccccccccccCCCCcEEEEe---ccchHHHHHHHHhccccCCceEEEeCCC-----CHHHHHHHHHhCCC
Confidence 9999873 345566633 344555444443331 12356667777 9999999886533
Q ss_pred -CeEEEEcCCCCC---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-----CCCCCCCCCcEEEecCCccCCCCCee
Q psy13354 167 -PKLIIAGASAYS---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-----EYPNPVPFADFITSTTHKSLRGPRGG 237 (1342)
Q Consensus 167 -~~liv~~~s~~~---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-----~~~~~l~~~Divv~S~sK~l~gp~GG 237 (1342)
..+|+ ..+.++ ...|+++|.++|++||++||+||||+.|.++.. .+.+..+..|++++|++|++ |..||
T Consensus 249 ~~~~Vv-~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~-G~~GG 326 (476)
T PLN02955 249 KRKVVV-TDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAA-GCHGG 326 (476)
T ss_pred CceEEE-EeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccch-hccCc
Confidence 34444 455555 566999999999999999999999998887651 12222345689999999999 88899
Q ss_pred EEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEE
Q psy13354 238 FILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIIL 317 (1342)
Q Consensus 238 ~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~ 317 (1342)
|+++++++++.++....++.++++..+..++++.+..+..... ...++++.++.+++++. .|+.+ .+++++
T Consensus 327 fi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~-~~~r~~L~~n~~~fr~~---~G~~~-----~sPI~p 397 (476)
T PLN02955 327 FIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKE-KWRRKAIWERVKEFKAL---SGVDI-----SSPIIS 397 (476)
T ss_pred eeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHh---cCCCC-----CCCEEE
Confidence 9999999999999888888888888877777776666665323 34678899999999874 36543 378888
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+.+.......++.+.|+++ ||++.+..+|.+|.+ ..++|+++++.|+.+
T Consensus 398 I~ig~~~~a~~~~~~L~~~-Gi~v~~i~yPtVP~g---~~rLRi~lsA~Ht~e 446 (476)
T PLN02955 398 LVVGNQEKALKASRYLLKS-GFHVMAIRPPTVPPN---SCRLRVTLSAAHTTE 446 (476)
T ss_pred EEeCCHHHHHHHHHHHHHC-CCEEEEECCCCCCCC---CceEEEeeCCCCCHH
Confidence 8887766555667777665 999999999999876 678999999998854
|
|
| >COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=242.93 Aligned_cols=310 Identities=14% Similarity=0.145 Sum_probs=256.6
Q ss_pred HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcC
Q psy13354 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG 480 (1342)
Q Consensus 401 ~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~ 480 (1342)
..+...+.++...++|++||++-.-....+..+.+...++.. ++..... ...
T Consensus 4 ~~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~~~~~--------------------------~~~~~~~--~~~ 55 (334)
T COG1466 4 EELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRALADGF--------------------------DENYSFF--DDS 55 (334)
T ss_pred HHHHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHhccch--------------------------hhHHhhc--ccc
Confidence 345667777778999999999999888888888887763211 1111111 111
Q ss_pred HHHHHHHHHHHhhcCccCCceEEEeccCccCC-HHHHHHHHHhhcCCC-CcEEEEEEeCCCCC---ChHHHhcc--EEEE
Q psy13354 481 INEMAQLLEQTIYAPINARYKIYVIDEVHMLT-HHAFNAMLKTLEEPP-KYIKFILATTEPQK---IPITVLSR--CIQF 553 (1342)
Q Consensus 481 ~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-~~~~~~Ll~~Le~p~-~~~vlIl~t~~~~k---l~~~L~sR--~~~i 553 (1342)
..++..+++.+.+.|+|+++++++|+.++... .+....+......+| ..+++++..++.++ ..+.+.+- +.++
T Consensus 56 ~~~~~~~~~~~~s~~lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~ 135 (334)
T COG1466 56 ELDWADLLSELESPSLFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVV 135 (334)
T ss_pred cCCHHHHHHHhhccccccCCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceE
Confidence 14688999999999999999999999999764 555566667777777 77777777766553 33344333 5699
Q ss_pred EEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCC-CCCHHHHHHHhccCcHHHHHHH
Q psy13354 554 NLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE-KITLNSMQEMLSIIDQKYLIQI 632 (1342)
Q Consensus 554 ~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~-~It~e~V~~~v~~~~~~~if~l 632 (1342)
.|.+++..++.+|+..++++.|++++++++++|+...+||++.+.++++|+..|..+ .||.++|+++++...+.++|++
T Consensus 136 ~~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l 215 (334)
T COG1466 136 ECKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDL 215 (334)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999865 6999999999999999999999
Q ss_pred HHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHH----------HHHHHhcCCHH
Q psy13354 633 LDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNE----------IIQLSKKFNIE 702 (1342)
Q Consensus 633 ~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~----------~~~~a~~~s~~ 702 (1342)
+|++..||..+|++++++|..+|++|+.|++.|+++|+.+++++...++|......++. +.++.+++|.+
T Consensus 216 ~dail~g~~~~a~~~l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~ 295 (334)
T COG1466 216 ADALLKGDVKKALRLLRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLK 295 (334)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHHHHcCHH
Confidence 99999999999999999999999999999999999999999998877776654444433 34566669999
Q ss_pred HHHHHHHHHHHHHHhhccC-CChhHHHHHHHHHhHcc
Q psy13354 703 QIQLFYQISIHGRNELELA-PDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 703 ~L~~~l~~l~~~d~~lK~~-~~~~~~le~~ll~l~~~ 738 (1342)
+|.++++.|.++|..+|++ .|+...++.++++++..
T Consensus 296 ~l~~~l~~l~~~d~~~K~~~~d~~~~l~~~l~~~~~~ 332 (334)
T COG1466 296 QLLKALRLLAQLDYQIKTGYGDPVWALELFLLRLLEL 332 (334)
T ss_pred HHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHhhc
Confidence 9999999999999999976 58999999999998753
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-24 Score=260.54 Aligned_cols=256 Identities=21% Similarity=0.341 Sum_probs=214.9
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHH---cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALD---KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~---~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
+.|..||+|++|++++||+.+++.|..++. .|..++++|||||||+|||++|+++++.++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----------------- 64 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----------------- 64 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC-----------------
Confidence 368999999999999999999999998886 566678899999999999999999999986
Q ss_pred CcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhh-cCccC-CceEEEeccCccCCH----HHHHHHHHhhcCCCCc
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIY-APINA-RYKIYVIDEVHMLTH----HAFNAMLKTLEEPPKY 529 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~-~p~~~-~~rvviIDE~~~L~~----~~~~~Ll~~Le~p~~~ 529 (1342)
.++++++++.....+.++.++..... .++++ +++||||||+|.++. ...++|+++++.+.
T Consensus 65 ------------~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~-- 130 (482)
T PRK04195 65 ------------WEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAK-- 130 (482)
T ss_pred ------------CCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCC--
Confidence 25788888777767777777765544 46665 789999999999965 56889999999654
Q ss_pred EEEEEEeCCCCCChH-HHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q psy13354 530 IKFILATTEPQKIPI-TVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS 608 (1342)
Q Consensus 530 ~vlIl~t~~~~kl~~-~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~ 608 (1342)
..+|+++|.+..+.+ +|++||..++|++++.+++..+|..+++++|+.+++++++.|++.++||+|.+++.|+.+ ...
T Consensus 131 ~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~-a~~ 209 (482)
T PRK04195 131 QPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAI-AEG 209 (482)
T ss_pred CCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH-hcC
Confidence 346778888877766 899999999999999999999999999999999999999999999999999999999872 233
Q ss_pred CCCCCHHHHHHHhccCcHHHHHHHHHHHHc-cChHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy13354 609 SEKITLNSMQEMLSIIDQKYLIQILDALAE-QDGNLILSIANKIEIYNLSYSIVLKDLSLLL 669 (1342)
Q Consensus 609 ~~~It~e~V~~~v~~~~~~~if~l~dal~~-~~~~~al~~l~~L~~~~~~~~~il~~L~~~~ 669 (1342)
.+.|+.++|+.++....+.++|++++++.. ++...++..+.+ ...+|..++..|...+
T Consensus 210 ~~~it~~~v~~~~~~d~~~~if~~l~~i~~~k~~~~a~~~~~~---~~~~~~~i~~~l~en~ 268 (482)
T PRK04195 210 YGKLTLEDVKTLGRRDREESIFDALDAVFKARNADQALEASYD---VDEDPDDLIEWIDENI 268 (482)
T ss_pred CCCCcHHHHHHhhcCCCCCCHHHHHHHHHCCCCHHHHHHHHHc---ccCCHHHHHHHHHhcc
Confidence 456999999999888888899999999987 677777665543 4567777766665544
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=254.77 Aligned_cols=273 Identities=22% Similarity=0.249 Sum_probs=237.4
Q ss_pred EEEEc--cCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHh-
Q psy13354 416 YLFTG--TRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI- 492 (1342)
Q Consensus 416 ~Ll~G--~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~- 492 (1342)
.+..| |.+.||||+|+++|+.+.+.+ ...+++++|+++..+++++++++..+.
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~------------------------~~~~~lElNASd~rgid~IR~iIk~~a~ 622 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGEN------------------------WRHNFLELNASDERGINVIREKVKEFAR 622 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhccc------------------------ccCeEEEEeCCCcccHHHHHHHHHHHHh
Confidence 46668 888999999999999986421 114699999999899999999997654
Q ss_pred hcCccC-CceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHH
Q psy13354 493 YAPINA-RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYIL 571 (1342)
Q Consensus 493 ~~p~~~-~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~ 571 (1342)
..|+.+ +++||||||+|.|+.+++++|++++|+|+.++.||++||.+.++.++|+|||+.+.|.+++.+++...|..++
T Consensus 623 ~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~ 702 (846)
T PRK04132 623 TKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIA 702 (846)
T ss_pred cCCcCCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHH
Confidence 456543 5799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHH
Q psy13354 572 NKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKI 651 (1342)
Q Consensus 572 ~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L 651 (1342)
+++|+.++++++..++..++||+|.+++.|+.+... .+.||.++|..+.+....+.++++++.+..++...+...+.++
T Consensus 703 ~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~-~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~el 781 (846)
T PRK04132 703 ENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREI 781 (846)
T ss_pred HhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999999999999999999999999999876543 4679999999999999999999999999999999999998887
Q ss_pred H-HcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHH
Q psy13354 652 E-IYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTM 730 (1342)
Q Consensus 652 ~-~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~ 730 (1342)
+ ..|.++..++..+...+... . .+...-.+++..+++.|..+..+.++.+-++.
T Consensus 782 l~~~G~~~~~iL~~l~~~l~~~---~----------------------i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a 836 (846)
T PRK04132 782 LLKQGLSGEDVLVQMHREVFNL---P----------------------IDEPKKVELADKIGEYNFRLVEGANEMIQLEA 836 (846)
T ss_pred HHHhCCCHHHHHHHHHHHHHhc---C----------------------CCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHH
Confidence 7 78999998888887766221 0 11122346888999999999999999999999
Q ss_pred HHHHhHcc
Q psy13354 731 TLLRMLVF 738 (1342)
Q Consensus 731 ~ll~l~~~ 738 (1342)
|+.++|.+
T Consensus 837 ~la~~~~~ 844 (846)
T PRK04132 837 LLAQFTLM 844 (846)
T ss_pred HHHHHHhh
Confidence 99998754
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-24 Score=222.31 Aligned_cols=159 Identities=38% Similarity=0.663 Sum_probs=135.8
Q ss_pred cchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEc
Q psy13354 395 GQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMD 474 (1342)
Q Consensus 395 Gq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~ 474 (1342)
||+.+++.|.+.+++++++|+|||+||+|+||+++|+.+++.+.|.... ..+|+.|.+|..+..+.|+|+..++
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~------~~~c~~c~~c~~~~~~~~~d~~~~~ 74 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPN------EDPCGECRSCRRIEEGNHPDFIIIK 74 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-C------TT--SSSHHHHHHHTT-CTTEEEEE
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCC------CCCCCCCHHHHHHHhccCcceEEEe
Confidence 8999999999999999999999999999999999999999999997533 2399999999999999999999998
Q ss_pred cCCC---cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEE
Q psy13354 475 AAST---RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCI 551 (1342)
Q Consensus 475 ~~~~---~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~ 551 (1342)
.... -++++++++.+.+...|..+.+||+|||++|.|+.+++|+|+++||+||++++|||+|++++++++||+|||+
T Consensus 75 ~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 75 PDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQ 154 (162)
T ss_dssp TTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSE
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhce
Confidence 7643 5789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC
Q psy13354 552 QFNLKKML 559 (1342)
Q Consensus 552 ~i~~~~l~ 559 (1342)
.+.|++++
T Consensus 155 ~i~~~~ls 162 (162)
T PF13177_consen 155 VIRFRPLS 162 (162)
T ss_dssp EEEE----
T ss_pred EEecCCCC
Confidence 99999874
|
... |
| >KOG1359|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=221.66 Aligned_cols=314 Identities=21% Similarity=0.301 Sum_probs=246.8
Q ss_pred CceeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..|.+++.+||++.. ++++-..++ +.|+.|..+.++..+ ...+..||. +++++.+.+++++++ ++..||
T Consensus 67 k~ilnFcaNnYLGLsshPeii~a~~~al-eeyGaGlssvrfIcGtq~iHk~LE~----kiAqfh~rED~ilyp-scfdAN 140 (417)
T KOG1359|consen 67 KKILNFCANNYLGLSSHPEIINAGQKAL-EEYGAGLSSVRFICGTQDIHKLLES----KIAQFHGREDTILYP-SCFDAN 140 (417)
T ss_pred cceeeecccccccccCChHHHHHHHHHH-HHhCCCccceeEEecchHHHHHHHH----HHHHHhCCCceEEec-cccccc
Confidence 457778889999876 888878787 578888888887744 556666666 999999999999999 999999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHH---hcCCeEEEEcCCCCC-
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAK---KNKPKLIIAGASAYS- 178 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~---~~~~~liv~~~s~~~- 178 (1342)
..++-+++.|.|.|+.-.+.|...........+ -..+|+-.++..+. +.+.++|+. .+.++
T Consensus 141 ag~feail~pedAvfSDeLNhASIIdGirLckr--------------y~h~dv~~l~~~l~~a~k~r~klv~T-Dg~FSM 205 (417)
T KOG1359|consen 141 AGAFEAILTPEDAVFSDELNHASIIDGIRLCKR--------------YRHVDVFDLEHCLISACKMRLKLVVT-DGVFSM 205 (417)
T ss_pred hHHHHHhcChhhhhhccccccchhhhhhHHHhh--------------hccchhHHHHHHHHHhhhheEEEEEe-cceecc
Confidence 999999999999998654444332222211111 11235555554333 234455554 55555
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-----CCCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhh
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-----EYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-----~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~ 251 (1342)
...|+++|.+++++||++|++||+|+.|+++.. +..+....+|++.++++|+++|..|||+.+++.++..++.
T Consensus 206 DGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~~li~llrq 285 (417)
T KOG1359|consen 206 DGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLISLLRQ 285 (417)
T ss_pred CCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCChhHHHHHHh
Confidence 666999999999999999999999999887652 3345555689999999999988899999999999999999
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
...++.++++..|...+.+.+..+.+- .-....++.+.+.+++++.++..||.+.. ...+++++.+.+...+...+.
T Consensus 286 r~RpylFSnslppavV~~a~ka~dllm-~s~~~i~~~~a~~qrfr~~me~aGftIsg--~~hPI~pv~lGda~lA~~~ad 362 (417)
T KOG1359|consen 286 RSRPYLFSNSLPPAVVGMAAKAYDLLM-VSSKEIQSRQANTQRFREFMEAAGFTISG--ASHPICPVMLGDARLASKMAD 362 (417)
T ss_pred cCCceeecCCCChhhhhhhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCceecC--CCCCccceecccHHHHHHHHH
Confidence 999999999888888777766666653 33456788899999999999999999843 456788888888877889999
Q ss_pred HHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+|++ ||+|..+.+|.+|.+ ..++|+.+++.|+.
T Consensus 363 ~lLk~-Gi~Vigfs~PvVP~g---kariRVqiSAaHt~ 396 (417)
T KOG1359|consen 363 ELLKR-GIYVIGFSYPVVPKG---KARIRVQISAAHTE 396 (417)
T ss_pred HHHhc-CceEEeecCCcCCCC---ceEEEEEEehhcCH
Confidence 99987 999999999999987 78899999998884
|
|
| >KOG1360|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=225.96 Aligned_cols=323 Identities=23% Similarity=0.324 Sum_probs=260.7
Q ss_pred CceeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
+.+..||+++|++.. |.+|+.+.+. +|+.|-++.+...+ +..+..||+ .++++.+.+.+++|+ |+..|+
T Consensus 171 k~VtVWCSNDYLgms~Hp~V~~A~~~tl~-~hG~GAGGTRNIsG~s~~hv~LE~----eLA~LHqK~aALlFs-SCfVAN 244 (570)
T KOG1360|consen 171 KKVTVWCSNDYLGMSRHPEVLDAMHDTLD-RHGAGAGGTRNISGHSKHHVRLEA----ELADLHQKEAALLFS-SCFVAN 244 (570)
T ss_pred CceEEEecCccccccCChHHHHHHHHHHH-HcCCCcCCccccCCCCchhhhHHH----HHHHHhcCcceeeee-eeeecc
Confidence 568889999999865 9999999995 77777777776644 777788888 899999999999999 999999
Q ss_pred HHHHHHcc--CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc---CCeEEEEc--CC
Q psy13354 103 QAVFFSVL--NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN---KPKLIIAG--AS 175 (1342)
Q Consensus 103 ~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~---~~~liv~~--~s 175 (1342)
...+..+. =||-+|+. ..+.|.+...-++-.++ .-..+..+ |+++|++++... .|++|-.. .+
T Consensus 245 DstLftLak~lpgcei~S---D~gNHASMI~GIrns~v--~K~IFrHN-----D~~hL~~lL~~~~~svPKivAFEtVhS 314 (570)
T KOG1360|consen 245 DSTLFTLAKKLPGCEIFS---DEGNHASMIQGIRNSRV--PKHIFRHN-----DLDHLEQLLQSSPKSVPKIVAFETVHS 314 (570)
T ss_pred chHHHHHHHHCCCcEEec---cccchHHHHHHhhhcCC--cceeeccC-----CHHHHHHHHHhCCCCCCceEEEeeeec
Confidence 99988883 48878773 33555555444444443 33445666 899999988754 45665542 24
Q ss_pred CCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhc-----CCCCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHh
Q psy13354 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAA-----GEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIIN 250 (1342)
Q Consensus 176 ~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-----~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~ 250 (1342)
+.+...|+++|++++++||++-++||+|+.|.++. +...+.++..||+.+++.|+| |--||||++...+++.++
T Consensus 315 M~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKaf-GcVGGYIAat~~LvDmiR 393 (570)
T KOG1360|consen 315 MDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAF-GCVGGYIAATRKLVDMIR 393 (570)
T ss_pred cCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhc-ccccceehhhhhHHHHHH
Confidence 44477799999999999999999999999998865 244555666899999999999 888999999999999999
Q ss_pred hccCCccccCCcHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHH
Q psy13354 251 SAVFPGIQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKI 329 (1342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~Aaa~al~~~l~-~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~ 329 (1342)
....++.++++..|...+-++...+++. ++....+...+++..++++.|.+.|+++.. .+++++++.+.+...+.+.
T Consensus 394 SyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi~--~pSHIiPv~vgda~l~~~~ 471 (570)
T KOG1360|consen 394 SYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVIP--NPSHIIPVRVGDAALAKQA 471 (570)
T ss_pred HhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCcccC--CCcceeeeeccCHHHHHHH
Confidence 9999999988877776666666666653 234566778899999999999999999865 5689999999998888899
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFS 372 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~ 372 (1342)
...|+.++||+|-...+|.++.+ ..++|+..++.+|..+.
T Consensus 472 sd~Li~~h~iYvQaINyPTV~rG---~E~LRiaPTP~HT~~mm 511 (570)
T KOG1360|consen 472 SDILISKHNIYVQAINYPTVARG---TERLRIAPTPHHTPQMM 511 (570)
T ss_pred HHHHHHhcCeEEEeccCCccccc---ceeeecCCCCCCCHHHH
Confidence 99999999999999999999987 78899999999886554
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=258.90 Aligned_cols=259 Identities=23% Similarity=0.349 Sum_probs=212.6
Q ss_pred HHHHhhccCCCCccccccchhhH---HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHIS---KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~---~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
..+|+.||||++|++++||++++ ..|.+.+..++.++ ++||||||+|||++|+++++.+.+
T Consensus 15 ~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~s-lLL~GPpGtGKTTLA~aIA~~~~~--------------- 78 (725)
T PRK13341 15 EAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGS-LILYGPPGVGKTTLARIIANHTRA--------------- 78 (725)
T ss_pred cCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHhcC---------------
Confidence 34899999999999999999998 46888999998876 699999999999999999998763
Q ss_pred CCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHh-hcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEE
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI-YAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFI 533 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~-~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlI 533 (1342)
.+..+++. ..++.++++.++.+. ..+..+.+.+++|||+|.|+...+++|+.++++ ..+++|
T Consensus 79 --------------~f~~lna~-~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~--g~IiLI 141 (725)
T PRK13341 79 --------------HFSSLNAV-LAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLI 141 (725)
T ss_pred --------------cceeehhh-hhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC--ceEEEE
Confidence 23444443 234456666666552 234445678999999999999999999999987 356677
Q ss_pred EEeCCCC--CChHHHhccEEEEEEcCCCHHHHHHHHHHHHH-------hcCCCcchhHHHHHHHhcCCcHHHHHHHHHHH
Q psy13354 534 LATTEPQ--KIPITVLSRCIQFNLKKMLHHDIVNNLCYILN-------KENIKFETSALNLIATGAQGSMRDALSLTDQA 604 (1342)
Q Consensus 534 l~t~~~~--kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~-------~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl 604 (1342)
.+++... ++.+++.|||.++.|++++.+++..++.+.+. .+++.++++++++|++.+.||+|.+++.|+.+
T Consensus 142 ~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a 221 (725)
T PRK13341 142 GATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELA 221 (725)
T ss_pred EecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7665543 67789999999999999999999999999887 56789999999999999999999999999997
Q ss_pred HhhcC----C--CCCHHHHHHHhcc----------CcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy13354 605 INYSS----E--KITLNSMQEMLSI----------IDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLL 668 (1342)
Q Consensus 605 ~~~~~----~--~It~e~V~~~v~~----------~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~ 668 (1342)
...+. + .||.+++++.+.. ...+.|..+++++..+|.+.|+..+.+|+..|++|..|+..|...
T Consensus 222 ~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~ 301 (725)
T PRK13341 222 VESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIA 301 (725)
T ss_pred HHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 65431 1 2788888887643 344689999999999999999999999999999999888766554
Q ss_pred H
Q psy13354 669 L 669 (1342)
Q Consensus 669 ~ 669 (1342)
.
T Consensus 302 a 302 (725)
T PRK13341 302 A 302 (725)
T ss_pred H
Confidence 3
|
|
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-25 Score=260.04 Aligned_cols=247 Identities=13% Similarity=0.089 Sum_probs=174.6
Q ss_pred cCeeEEec-ccceEEEeCCeEEEEEeCCC-cEEEcceEEEecccCCCceeEecccccCCCCCCCcc--hHHHHHHHHHcC
Q psy13354 821 LNLYLFQE-EVDDLIIKTNKILGVVTKIG-IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFS--TTSLAKRLKELQ 896 (1342)
Q Consensus 821 ~~~~i~~~-~v~~l~~~~~~~~gv~~~~g-~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~--s~~l~~~l~~~g 896 (1342)
.||+|+.+ +|++| +++. .+|.+..+ ..++|++|||||| |.++|.+|++|++| +..|+|++.+.-
T Consensus 99 ~gV~i~~~~~V~~i--~~~~-~~v~~~~~~~~~~a~~vIlAtG---------G~s~p~~Gs~g~gy~la~~lGh~i~~~~ 166 (376)
T TIGR03862 99 QGVQFHTRHRWIGW--QGGT-LRFETPDGQSTIEADAVVLALG---------GASWSQLGSDGAWQQVLDQRGVSVAPFA 166 (376)
T ss_pred CCCEEEeCCEEEEE--eCCc-EEEEECCCceEEecCEEEEcCC---------CccccccCCCcHHHHHHHHCCCcccCCc
Confidence 89999666 79998 5554 57877543 4699999999999 99999999999988 888888888888
Q ss_pred CCccccccCCC-c---ccccCccccccc----eeecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccC
Q psy13354 897 LSHGRLKTGTP-P---RIDKRTIDFSKM----EEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNS 968 (1342)
Q Consensus 897 ~~~~~~~~~~~-~---r~~~~si~~~~~----~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~ 968 (1342)
+.+++|++..+ + .+.+-+++...+ ..+.|| +.|||||+|||+++ ++|+++...... ..-....+|+.
T Consensus 167 PaL~pl~~~~~~~~~~~L~Gv~~~~~~~~~~~~~~~Ge-llFTh~GiSGpavl---~lS~~~~~~~~~-~~~~~i~idf~ 241 (376)
T TIGR03862 167 PANCGFLVDWSAHFASRFAGEPLKRVNATAGTQQTRGE-IVITARGLEGGLIY---ALSAALREQIKA-GGSANLFLDLL 241 (376)
T ss_pred CeeceEEccCchhhHhhcCCCcccceEEEeCCeeEeee-EEEECCCccHHHHH---HHHHHHHHHHhc-CCceEEEEECC
Confidence 88888887653 1 267777654322 134599 99999999999999 999998532111 11134678999
Q ss_pred CCCc-cccccccCCCCCCcccccccCCCCCccceeEeeccccccee-ecCccccCCCHHHHHHHHHhcccc---------
Q psy13354 969 PIFS-GKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEY-YPNGISTSLPFEAQIELVQSIDGM--------- 1037 (1342)
Q Consensus 969 p~~~-~~~~~~g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~-~~~g~~~~l~~~~q~~~~~~i~gl--------- 1037 (1342)
|.++ +++.....+. ++.+..+.+....-+++.+.. ....++....+++..++++.++.+
T Consensus 242 P~~~~~~l~~~l~~~----------~~~k~l~~~L~~~~gi~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~v~g~~~ 311 (376)
T TIGR03862 242 PDLSLEQVTKRLAAP----------RGKQSLSNHLRKALGLDGVKRALLREVFPKAAWSQPETLAQTIKALPLPLDGTRP 311 (376)
T ss_pred CCCCHHHHHHHHHhh----------cccchHHHHHHHHhCCCHHHHHHHHHHhhccCHHHHHHHHHHHhCCeeeecccCC
Confidence 9996 3332211111 111211111110001110000 011112222367889999999877
Q ss_pred -cceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHHH------HHHHHHHHHHHHHHHh
Q psy13354 1038 -KNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEE------AASQGLLAGLNAALFS 1101 (1342)
Q Consensus 1038 -e~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~e------A~~~G~~Ag~na~~~~ 1101 (1342)
++|+||+|||++++ |||+ +| ||.+||||||||++|++|.++ ||++|++||.+|+-++
T Consensus 312 ~~~A~VT~GGV~~~E--I~~~----~~-Sk~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 312 IDEAISTAGGVRQDA--LDES----LM-LKARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred cceEEEeCCcccHHH--cChh----hh-cccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999 9976 55 999999999999999999995 9999999999998654
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=231.57 Aligned_cols=322 Identities=17% Similarity=0.197 Sum_probs=241.7
Q ss_pred CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc---c
Q psy13354 36 ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV---L 110 (1342)
Q Consensus 36 ~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al---~ 110 (1342)
....|..|++++.+.....+ .+..+..+.......+..+++|+.+++++|++ +.++|+.|.|+|++.+..++ +
T Consensus 31 ~~~~p~~V~~a~~~~~~~~~--an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~ 108 (405)
T COG0520 31 TSQKPQAVLDAVAEYYRRYN--ANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSL 108 (405)
T ss_pred cccCCHHHHHHHHHHHHhhc--CCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhh
Confidence 44567779999888775333 33444444555666677888999999999987 66888879999999999998 6
Q ss_pred CCCCEEEEeeccCCccchhhHHhhh-CCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHH
Q psy13354 111 NPGDTIMGMSLQEGGHLTHGMMLNM-SGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYH 188 (1342)
Q Consensus 111 ~pGD~Vlv~~~~~~~~~s~~~~~~~-~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~ 188 (1342)
.+||+|+++..+|++....|..+.. .|..++.+ +.++++.++.+.++..+++.++.+.+.+.+|.+ ...|+++|++
T Consensus 109 ~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i--~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~ 186 (405)
T COG0520 109 KPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVI--PLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAE 186 (405)
T ss_pred cCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEE--ecCCCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHH
Confidence 9999999999999998888876654 48755555 555789999999999888766666666677777 5559999999
Q ss_pred HHHHcCCEEEEEcccchhhhhcCCCCCCCC----CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc----------
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAAGEYPNPVP----FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV---------- 253 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~~~~~~~l~----~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~---------- 253 (1342)
+||++|+++++|++|+.+.. +++ .+|++++|.|||+.||.| |++++++++.+.+.+..
T Consensus 187 la~~~ga~v~VDaaq~~~h~-------~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~ 259 (405)
T COG0520 187 LAHEHGALVLVDAAQAAGHL-------PIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVS 259 (405)
T ss_pred HHHHcCCEEEEECccccCcc-------CCCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCceeeec
Confidence 99999999999999998876 332 379999999999989999 99999999888874321
Q ss_pred -----------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC--CCeEEEEE
Q psy13354 254 -----------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT--KSHIILVD 319 (1342)
Q Consensus 254 -----------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~--~~~~v~i~ 319 (1342)
..+-.++++.....++.+++......+++.+.++..++..++.+.|.+. +++++.++. ...++.+.
T Consensus 260 ~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~ 339 (405)
T COG0520 260 RDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFN 339 (405)
T ss_pred ccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEE
Confidence 1122366667777777777777766678888899999999999999986 577766443 45677777
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCC--Ccccccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPE--KPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~--~~~~~~~lRi~~~~~~t~~ 370 (1342)
+... ........|.++||.++.+.....+. ..-..+.+|+|++.++|.+
T Consensus 340 v~~~--~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~e 390 (405)
T COG0520 340 VKGI--HPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEE 390 (405)
T ss_pred eCCC--CHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHH
Confidence 7664 33444555555689998763222110 0001234999999998853
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=240.80 Aligned_cols=320 Identities=19% Similarity=0.214 Sum_probs=219.9
Q ss_pred ceeeeecCCCCcHH-----HHHHHhHHHHhccccCCCCCCc-cCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 29 NIELIASENYTSLA-----VMEAQGTLLTNKYAEGYPGKRY-YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~-----v~eal~~~l~~~~~~g~~~~~~-~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
....++++||++.. +.++..+++. +|+.+..+++. ++....+.++|+ .+++++|.+++++++ +|+.++
T Consensus 101 ~~~n~~s~~YLgl~~~~~~~~~~~~~ai~-~~g~~~~~sr~~~g~~~~~~ele~----~lA~~~g~~~ai~~~-~G~~an 174 (489)
T PLN02483 101 RCLNLGSYNYLGFAAADEYCTPRVIESLK-KYSASTCSSRVDGGTTKLHRELEE----LVARFVGKPAAIVFG-MGYATN 174 (489)
T ss_pred eEEEeecCCccCcCCCCHHHHHHHHHHHH-HhCCCCCccccccCCcHHHHHHHH----HHHHHhCCCcEEEEC-CHHHHH
Confidence 34567889998775 5677777775 56555445543 455666777777 899999988888888 899999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh-------cC----CeEEE
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK-------NK----PKLII 171 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~-------~~----~~liv 171 (1342)
..++.+++++||+|++..+.|+ +....+...|.. ++.++.+ |++++++.+++ .+ .++++
T Consensus 175 ~~~i~al~~~Gd~Vi~d~~~h~---s~~~~~~~~Ga~--v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~li 244 (489)
T PLN02483 175 STIIPALIGKGGLIISDSLNHN---SIVNGARGSGAT--IRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIV 244 (489)
T ss_pred HHHHHHhCCCCCEEEEcchhhH---HHHHHHHHcCCe--EEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEE
Confidence 9999999999999997665544 444555677774 4444554 56666665542 11 24555
Q ss_pred EcCCCCC---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-C----CCCC-CCCCcEEEecCCccCCCCCeeEEEEe
Q psy13354 172 AGASAYS---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-E----YPNP-VPFADFITSTTHKSLRGPRGGFILMK 242 (1342)
Q Consensus 172 ~~~s~~~---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~----~~~~-l~~~Divv~S~sK~l~gp~GG~iv~~ 242 (1342)
++.+.++ ...++++|+++|++||++||+||+|+.|..+.. . +.+. ....|++++||||++ |+.|||++++
T Consensus 245 vve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~-g~~GG~i~~~ 323 (489)
T PLN02483 245 IVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSF-GSCGGYIAGS 323 (489)
T ss_pred EECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhc-ccCceEEEcC
Confidence 5454444 456999999999999999999999987655321 1 1111 123689999999999 7889999999
Q ss_pred chhHHHHhhccCCccccCCcHHH-HHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEE
Q psy13354 243 KKYKKIINSAVFPGIQGGPLMHV-IAAKAVAFKEVL----KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIIL 317 (1342)
Q Consensus 243 ~~l~~~l~~~~~~~~~~~~~~~~-~~Aaa~al~~~l----~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~ 317 (1342)
+++++.++.....+.+++...+. ..++..++..+. .+...+.++++.++++++++.|++.|+.+.. +.+++++|
T Consensus 324 ~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~~v~~-~~~sp~~~ 402 (489)
T PLN02483 324 KELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGFEVLG-DNDSPVMP 402 (489)
T ss_pred HHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCCcccC-CCCCCEEE
Confidence 99999998754444444333333 333333332221 1234556788999999999999999987643 34556777
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+.+.......++...++++ ||.+.+..+|..+.. .+++|++++..++.+
T Consensus 403 l~l~~~~~~~~~~~~Ll~~-GI~v~~~~fp~~p~~---~~~vRi~isa~~t~e 451 (489)
T PLN02483 403 IMLYNPAKIPAFSRECLKQ-NVAVVVVGFPATPLL---LARARICISASHSRE 451 (489)
T ss_pred EEECCHHHHHHHHHHHHHC-CcEEeeeCCCCCCCC---CceEEEEeCCCCCHH
Confidence 7665433344677777764 999998666655543 467999999877754
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=216.22 Aligned_cols=320 Identities=14% Similarity=0.160 Sum_probs=239.6
Q ss_pred cCceeeeecC-CC-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASE-NY-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~-n~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.|+++..+ ++ .+|++++|+.+++. +...||+ ...+++.+++.++.++.++.+ +.++++++..-+
T Consensus 25 ~DvlPmWVADMDf~~pp~i~~Al~~rvd-hGvfGY~--------~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpg 95 (388)
T COG1168 25 EDVLPMWVADMDFPTPPEIIEALRERVD-HGVFGYP--------YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPG 95 (388)
T ss_pred CCcceeeeecccCCCCHHHHHHHHHHHh-cCCCCCC--------CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHh
Confidence 4668887664 66 56669999999985 3334554 223467777888999998876 556677688889
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
+..+++++..|||.|++.++.|+. ....+...|..+-..++..+ ..+.+|.++|++.+.+.+++++++|+|+||
T Consensus 96 i~~~I~~~T~~gd~Vvi~tPvY~P---F~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~G 172 (388)
T COG1168 96 ISLAIRALTKPGDGVVIQTPVYPP---FYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTG 172 (388)
T ss_pred HHHHHHHhCcCCCeeEecCCCchH---HHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCC
Confidence 999999999999999987755543 45556777774444443322 446789999999999888889999998888
Q ss_pred ---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC----C--cEEEecCCccCCCCCe---eEEE-Eechh
Q psy13354 179 ---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF----A--DFITSTTHKSLRGPRG---GFIL-MKKKY 245 (1342)
Q Consensus 179 ---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~----~--Divv~S~sK~l~gp~G---G~iv-~~~~l 245 (1342)
+..++.+|.++|.+||+.||+||+|+...+.+..+...... + .+.+.|.||+| ...| ++++ .++++
T Consensus 173 rvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtF-NlaGL~~a~~Ii~n~~l 251 (388)
T COG1168 173 RVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTF-NLAGLKCAYIIISNREL 251 (388)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccc-cchhhhheeEEecCHHH
Confidence 33489999999999999999999999887766555543321 2 36778999999 5555 5555 45555
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEEccCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
.............++++.....|..+|..+. ++|++++.+.+.+|++++.+.+.+. ++++. .|.+++..|++++..
T Consensus 252 r~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G-~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~-~p~gTYL~WLD~r~l 329 (388)
T COG1168 252 RAKFLKRLKRNGLHGPSALGIIATEAAYNQG-EPWLDELLEYLKDNRDYVADFLNKHLPGVKVT-EPQGTYLAWLDCREL 329 (388)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEe-cCCCceeeeeecccc
Confidence 4444333334455566666777766666554 4599999999999999999999985 67764 478899999999998
Q ss_pred CCCH-HHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 324 KITG-KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 324 ~~~~-~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.+. +....++++.+|.+.++..|+..+ .+++|+.+..
T Consensus 330 ~l~d~~l~~~ll~~akVal~~G~~FG~~g----~gf~RlN~ac 368 (388)
T COG1168 330 GLDDSELAEFLLEEAKVALSPGSTFGEEG----SGFVRLNFAC 368 (388)
T ss_pred CCChHHHHHHHHHhhcEeccCCCccCcCC----CceEEEecCC
Confidence 8874 788888899999999888887655 4778987654
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-22 Score=237.65 Aligned_cols=315 Identities=19% Similarity=0.268 Sum_probs=211.6
Q ss_pred eeecCCCC----cHHHHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHH
Q psy13354 32 LIASENYT----SLAVMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVF 106 (1342)
Q Consensus 32 l~a~~n~l----~~~v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al 106 (1342)
.+++.+|+ +|.+++++.+++. .+..+++++++..+ ...+.+ +++.+++++|.+++++++ ||++|+..++
T Consensus 42 ~~~~~~~lg~~~~~~v~~~~~~~~~-~~~~~~~~s~~~~G~~~~~~~----le~~ia~~~g~~~~ii~~-~~~~a~~~~~ 115 (393)
T TIGR01822 42 NFCANNYLGLSSHPDLIQAAKDALD-EHGFGMSSVRFICGTQDIHKE----LEAKIAAFLGTEDTILYA-SCFDANGGLF 115 (393)
T ss_pred EeeCCCccccCCCHHHHHHHHHHHH-HhCCCCCCcCcccCChHHHHH----HHHHHHHHhCCCcEEEEC-chHHHHHHHH
Confidence 45555653 4458999888885 44456777766544 333344 445999999998888887 9999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--c
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--Q 179 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~ 179 (1342)
.+++++||+|++....|++.. ..+...+. ..+.+. .+|++++++.+++. ++++|++...+++ .
T Consensus 116 ~~l~~~gd~vi~~~~~~~s~~---~~~~~~~~--~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~ 185 (393)
T TIGR01822 116 ETLLGAEDAIISDALNHASII---DGVRLCKA--KRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGV 185 (393)
T ss_pred HHhCCCCCEEEEeccccHHHH---HHHHhcCC--ceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCC
Confidence 999999999998776665543 33344443 223222 25899999988752 4456665433223 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCC-----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE-----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~-----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~ 254 (1342)
..++++|+++|++||++||+|++|+.|..+... ..+....+|++++|+||+++|+.|||+++++++++.+.....
T Consensus 186 ~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~~~~~~~~l~~~~~ 265 (393)
T TIGR01822 186 IAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTARKEVVELLRQRSR 265 (393)
T ss_pred cCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEeCHHHHHHHHHhCc
Confidence 569999999999999999999999877653211 111122468999999999977778999999999888876444
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
++.++++..+...+++.+..+... ..++.++++.++++++.+.|.+.|+.+.. +..+++++.+.+...+.+++..++
T Consensus 266 ~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~i~~~~~~~~~~l~~~L~ 342 (393)
T TIGR01822 266 PYLFSNSLPPAVVGASIKVLEMLE-ASNELRDRLWANTRYFRERMEAAGFDIKP--ADHPIIPVMLYDAVLAQRFARRLL 342 (393)
T ss_pred cceecCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHcCCCCCC--CCCCEEEEEeCCHHHHHHHHHHHH
Confidence 444444333333322333333333 44567889999999999999888877632 234455555543223456667666
Q ss_pred HHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++ ||.+....+|..+.+ ..++|++++..++.
T Consensus 343 ~~-gI~v~~~~~~~~~~~---~~~iRis~~~~~t~ 373 (393)
T TIGR01822 343 EE-GIYVTGFFYPVVPKG---QARIRVQISAAHTE 373 (393)
T ss_pred HC-CeeEeeeCCCCCCCC---CceEEEEECCCCCH
Confidence 65 999986555543322 34699999887664
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=235.22 Aligned_cols=320 Identities=14% Similarity=0.096 Sum_probs=219.0
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~A 101 (1342)
+.+.+..+++.+ ++.+.+++.+.+... ....|....+..++++++++++.+.+|.+ +.+++++|+++|
T Consensus 32 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~ 105 (385)
T PRK09276 32 DVISLGIGDPDLPTPDHIIEAMCKAVEDP------ENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEG 105 (385)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhCC------CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHH
Confidence 457788777543 334777777666321 11224444556788898888887776742 346666577889
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC---
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--- 178 (1342)
+..++.++++|||+|+++.+.++.+ .......|..+..+++..+.++.+|++++++.+.+ +++++++++++||
T Consensus 106 i~~~~~~~~~~gd~Vl~~~P~y~~~---~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~ 181 (385)
T PRK09276 106 IAHIPLAFVNPGDVVLVPDPGYPVY---KIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAK-KAKLMFINYPNNPTGA 181 (385)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcCh---HHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccc-cceEEEEeCCCCCCCC
Confidence 9999999999999999877555443 34445667744444332233467899999887765 5677777766666
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC---CCcEEEecCCccCCCCCe---eEEEEechhHHH
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP---FADFITSTTHKSLRGPRG---GFILMKKKYKKI 248 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~---~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~ 248 (1342)
....+++|+++|++||++||+||+|....+......+. ++ ...++++||||.| |++| ||+++++++++.
T Consensus 182 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~i~~~~l~~~ 260 (385)
T PRK09276 182 VADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTY-NMTGWRIGFAVGNADLIAG 260 (385)
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhc-CCcchhheeeeCCHHHHHH
Confidence 22257899999999999999999997654432222221 11 1347889999999 7777 999999998888
Q ss_pred HhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHH
Q psy13354 249 INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGK 328 (1342)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~ 328 (1342)
+...... ...+.+.+.+.++..++.. ...++++.++++.++++++.+.|++.|+++.. +.+++++|+.+++...+.+
T Consensus 261 ~~~~~~~-~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 337 (385)
T PRK09276 261 LGKVKSN-VDSGVFQAIQEAGIAALNG-PQEVVEELRKIYQERRDILVEGLRKLGLEVEP-PKATFYVWAPVPKGYTSAE 337 (385)
T ss_pred HHHHHhh-ccCCCCHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEECCCCCCHHH
Confidence 8764322 2223334445544444432 23467788888999999999999998877643 4567889999986555667
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+...+++++||.+.++..++... .+++|++++.
T Consensus 338 l~~~ll~~~gi~v~~g~~f~~~~----~~~~Ris~~~ 370 (385)
T PRK09276 338 FATLLLDKAGVVVTPGNGFGEYG----EGYFRIALTV 370 (385)
T ss_pred HHHHHHHhCCEEECCchhhCCCC----CCeEEEEeCC
Confidence 78888887899999876554322 3579999874
|
|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=217.69 Aligned_cols=210 Identities=20% Similarity=0.298 Sum_probs=167.1
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccC-CCcCHHHHHHHHH
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA-STRGINEMAQLLE 489 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~-~~~~~~~i~~ii~ 489 (1342)
..+|+|||+|++|+||..+|..+|+.+.|... ..+|+.|++|..+..+.|||+..+... ..-++++++++.+
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~-------~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~ 77 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKA-------NGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIIN 77 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCC-------CCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHH
Confidence 57899999999999999999999999999742 148999999999999999999887543 3467899999999
Q ss_pred HHhhcCcc-CCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcCC----------
Q psy13354 490 QTIYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM---------- 558 (1342)
Q Consensus 490 ~~~~~p~~-~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l---------- 558 (1342)
.+...|+. +++||+||++++.|+.++.|+|||+||+||++++||++|++++++++||+|||+.+.|.++
T Consensus 78 ~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~ 157 (261)
T PRK05818 78 KLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVES 157 (261)
T ss_pred HHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhccccccc
Confidence 99887755 5799999999999999999999999999999999999999999999999999999999888
Q ss_pred CHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHHHHH
Q psy13354 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDAL 636 (1342)
Q Consensus 559 ~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~dal 636 (1342)
++.++.+++.. ..+ +++ .++..++|++.++...++.+.......++...+..........++-.++.-+
T Consensus 158 ~~~~i~~~L~~---~~~--~d~----~i~~~a~g~~~~a~~l~~~l~n~~~~~~~v~kl~~~~~~~~~q~~~~~l~~l 226 (261)
T PRK05818 158 NDRYFQYILLS---FYS--VDE----QLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKTFSYYEIAQLLNLL 226 (261)
T ss_pred ChHHHHHHHHH---ccC--ccH----HHHHHcCCCHHHHHHHHHHHHcccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55565555432 223 334 6677789999999999884422222224445555555554444444444444
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=237.15 Aligned_cols=318 Identities=25% Similarity=0.297 Sum_probs=220.0
Q ss_pred eeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 30 IELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 30 i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
+..++++||++.. +++++.+++. .|..+..+++.. +..+.+.++++ .+++++|.+.+++++ +|++|+..
T Consensus 47 ~~~~~sn~ylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~g~~~~~~~Le~----~la~~~g~~~~l~~~-sG~~an~~ 120 (402)
T TIGR01821 47 VTVWCSNDYLGMGQHPEVLQAMHETLD-KYGAGAGGTRNISGTNIPHVELEA----ELADLHGKESALVFT-SGYVANDA 120 (402)
T ss_pred EEEeEccCcCCCCCCHHHHHHHHHHHH-HcCCCCcchhhhhCCcHHHHHHHH----HHHHHhCCCeEEEEC-chHHHHHH
Confidence 5578899998876 8999888885 565554444433 33444555555 899999987777776 99999999
Q ss_pred HHHHccC--CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---cCCeEEEEcCCCCC-
Q psy13354 105 VFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---NKPKLIIAGASAYS- 178 (1342)
Q Consensus 105 al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~~~~liv~~~s~~~- 178 (1342)
++..+.. +|+.|+.....| .+....+...|..+ ..++.+ |++++++.+.. .++++|++++++++
T Consensus 121 ai~~l~~~~~~~~v~~~~~~h---~s~~~~~~~~g~~~--~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~e~~~~~~ 190 (402)
T TIGR01821 121 TLATLAKIIPGCVIFSDELNH---ASMIEGIRHSGAEK--FIFRHN-----DVAHLEKLLQSVDPNRPKIIAFESVYSMD 190 (402)
T ss_pred HHHHhhCCCCCCEEEEcchHh---HHHHHHHHHcCCeE--EEECCC-----CHHHHHHHHHhccCCCCeEEEEcCCCCCC
Confidence 9998865 777777544333 33333344555533 333433 77888887763 24567777665554
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-C----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhc
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-E----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSA 252 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~ 252 (1342)
...|+++|.++|++||+++|+||+|+.|.++.. . ..+..+.+|++++|+||++ |..|||+++++++++.++..
T Consensus 191 G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~-g~~GG~i~~~~~~~~~l~~~ 269 (402)
T TIGR01821 191 GDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAF-GVVGGYIAASRKLIDAIRSY 269 (402)
T ss_pred CCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhh-ccCCceeecCHHHHHHHHHh
Confidence 555999999999999999999999997765321 1 1111223589999999999 77889999999999888765
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
..++.+++..++..++++.+..+.+... ....+++.++++++.+.|++.|+++.. +.++++++.++......++...
T Consensus 270 ~~~~~~t~~~~~~~~aaa~aaL~~~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~i~~i~~~~~~~a~~~~~~ 346 (402)
T TIGR01821 270 APGFIFTTSLPPAIAAGATASIRHLKES-QDLRRAHQENVKRLKNLLEALGIPVIP--NPSHIVPVIIGDAALCKKVSDL 346 (402)
T ss_pred CcCceecCcCCHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHcCCCcCC--CCCCEEEEEeCCHHHHHHHHHH
Confidence 5555544444555454444555554423 455667788999999999998887643 3466777766432223466777
Q ss_pred HHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+++++||.+.+..+|..+.+ ..++|++++..++.+
T Consensus 347 L~~~~Gi~v~~~~~p~~~~g---~~~lRis~~~~~t~e 381 (402)
T TIGR01821 347 LLNKHGIYVQPINYPTVPRG---TERLRITPTPAHTDK 381 (402)
T ss_pred HHhcCCEEEEeECCCCCCCC---CceEEEEeCCCCCHH
Confidence 77777999999887877644 467999999887743
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=234.08 Aligned_cols=317 Identities=14% Similarity=0.081 Sum_probs=218.4
Q ss_pred CceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C--CceEecCCHHHH
Q psy13354 28 NNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E--AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~--~~vi~~~sGs~A 101 (1342)
+.+.+..+++. .++.+.+++.+.+......+ |. ..+..++++++++++.+.+|. + +.+++++|+++|
T Consensus 33 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~------y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a 105 (399)
T PRK07681 33 KMIDLSIGNPDMPPADFVREEMVHTANQKESYG------YT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDG 105 (399)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhccccCC------CC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHH
Confidence 55777777654 33447777776653211111 11 245568888888888776664 2 345666588889
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++++||+|+++.+.|+.+ ...+...|. ++++++.+ +.+.+|++++++.+.+ +++++++++|+||
T Consensus 106 l~~~~~~~~~~Gd~Vlv~~P~y~~~---~~~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPT 179 (399)
T PRK07681 106 LVHLPMVYANPGDIILVPDPGYTAY---ETGIQMAGA--TSYYMPLKKENDFLPDLELIPEEIAD-KAKMMILNFPGNPV 179 (399)
T ss_pred HHHHHHHhCCCCCEEEECCCCccch---HHHHHhcCC--EEEEEecCCCCCCcCCHHHHHHhccc-cceEEEEeCCCCCc
Confidence 9999999999999999777655544 444456677 45555554 3467899999888764 5677777766666
Q ss_pred ----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--C---CCcEEEecCCccCCCCCe---eEEEEechhH
Q psy13354 179 ----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--P---FADFITSTTHKSLRGPRG---GFILMKKKYK 246 (1342)
Q Consensus 179 ----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~---~~Divv~S~sK~l~gp~G---G~iv~~~~l~ 246 (1342)
+...+++|+++|++||++||+||+|....+......+.. . ...++++||||.+ |.+| ||++++++++
T Consensus 180 G~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~~i~~~~l~ 258 (399)
T PRK07681 180 PAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSY-SLAGSRIGYMIGNEEIV 258 (399)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeeccccc-CCccceeEEEecCHHHH
Confidence 222588999999999999999999986544322222211 1 1357889999999 6666 9999999998
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCC
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKIT 326 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~ 326 (1342)
+.+........+ +.+.+.+.++..++.+ ...++++.++.+.++++++.+.|.+.|+.+. .+.+++++|++++....+
T Consensus 259 ~~~~~~~~~~~~-~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~p~~g~f~~~~l~~~~~~ 335 (399)
T PRK07681 259 RALTQFKSNTDY-GVFLPIQKAACAALRN-GAAFCEKNRGIYQERRDTLVDGFRTFGWNVD-KPAGSMFVWAEIPKGWTS 335 (399)
T ss_pred HHHHHHHhhccc-CCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CCCeeeEEEEECCCCCCH
Confidence 888764332222 2334455555544433 2246777788889999999999999888753 356789999999865556
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+++..+++++||.+.++..++... .+++|++++.
T Consensus 336 ~~~~~~l~~~~gv~v~pg~~f~~~~----~~~iRis~~~ 370 (399)
T PRK07681 336 LSFAYALMDRANVVVTPGHAFGPHG----EGFVRIALVQ 370 (399)
T ss_pred HHHHHHHHHhCCEEEeCChhhCcCC----CCeEEEEecC
Confidence 7888888887899999876554322 3579999973
|
|
| >KOG2035|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=205.16 Aligned_cols=326 Identities=20% Similarity=0.257 Sum_probs=234.4
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
-|..||+|++|+.++++++....|+.....+.+|| ++||||+|.||.|.+..+.+++...+....-. ...-...++-
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PH-ll~yGPSGaGKKTrimclL~elYG~gveklki--~~~t~~tpS~ 78 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPH-LLVYGPSGAGKKTRIMCLLRELYGVGVEKLKI--ETRTFTTPSK 78 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCe-EEEECCCCCCchhhHHHHHHHHhCCCchheee--eeEEEecCCC
Confidence 47899999999999999999999999988888988 89999999999999999999998532111000 0000001111
Q ss_pred --hhhccCCCccEEEEccCCCcCHH--HHHHHHHHH-hhcCc----cCCceEEEeccCccCCHHHHHHHHHhhcCCCCcE
Q psy13354 460 --VKIDNGCFMDYIEMDAASTRGIN--EMAQLLEQT-IYAPI----NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYI 530 (1342)
Q Consensus 460 --~~~~~~~~~d~~~i~~~~~~~~~--~i~~ii~~~-~~~p~----~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~ 530 (1342)
..+..-++...+|+++++....| -+++++.+. ++.+. ...+|||+|.|+|.|+.+++.+|.+++|....++
T Consensus 79 kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 79 KKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred ceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 12222233445666665433322 466666543 33332 3468999999999999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy13354 531 KFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE 610 (1342)
Q Consensus 531 vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~ 610 (1342)
.+|+++|..+++.++|+|||..++.+.|+++|+...+...++++|+.++.+.+..+++.++||+|.++-.++-+.... .
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n-~ 237 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNN-E 237 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888655432 1
Q ss_pred CCCHHHHHHHhccCcHH-HHHHHHHHHHccCh-HHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCC
Q psy13354 611 KITLNSMQEMLSIIDQK-YLIQILDALAEQDG-NLIL---SIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKD 685 (1342)
Q Consensus 611 ~It~e~V~~~v~~~~~~-~if~l~dal~~~~~-~~al---~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~ 685 (1342)
.-+.+- ..+...+++ .+-++.+.+...+. ++.+ ..+.+|+...-+|.-|+..|..++-. + .+
T Consensus 238 ~~~a~~--~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~----~-------~d 304 (351)
T KOG2035|consen 238 PFTANS--QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLL----K-------CD 304 (351)
T ss_pred cccccC--CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh----c-------CC
Confidence 111110 122333444 45677777765554 3333 45677888999999999888876632 1 11
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 686 SPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 686 ~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
... -..+.+..+.-+..+..|...-.-+|-|+.+++.
T Consensus 305 ~~~---------------k~~~~~~Aa~yEhRl~lG~KaIfHLEaFVA~fM~ 341 (351)
T KOG2035|consen 305 TQL---------------KLEVIQHAAKYEHRLRLGQKAIFHLEAFVAKFMC 341 (351)
T ss_pred chh---------------HHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHH
Confidence 111 1224445555566666555555677877777654
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=233.80 Aligned_cols=322 Identities=11% Similarity=0.072 Sum_probs=219.8
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.+.+..+++. .++.+.+++.+.+.+.. ..|....+..++++++++++.+.+|.. +.+++++|+++|
T Consensus 32 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 104 (387)
T PRK08960 32 HDVIHLEIGEPDFTTAEPIVAAGQAALAAGH-------TRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGA 104 (387)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-------CccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHH
Confidence 355788877754 35558888887774211 113334556788887777777665532 455566588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q- 179 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~- 179 (1342)
+..++.+++.|||+|+++.+.|+.+. ..+...|..+..++++.+.++.+|++.+++.+++.+..+++. +++|| +
T Consensus 105 l~~~~~~~~~~gd~vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~-~p~NPtG~ 180 (387)
T PRK08960 105 LLLASSLLVDPGKHWLLADPGYPCNR---HFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVA-SPANPTGT 180 (387)
T ss_pred HHHHHHHhcCCCCEEEEcCCCCcchH---HHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEE-CCCCCCCc
Confidence 99999999999999998876666554 334555665555544333456799999999887655555554 44555 2
Q ss_pred ---ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhh
Q psy13354 180 ---YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINS 251 (1342)
Q Consensus 180 ---~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~ 251 (1342)
...+++|+++|++||++||+||+|....+. +...+.... ..++++|+||.+ |++| ||+++++++++.+..
T Consensus 181 ~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~-~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~~~~~~~~~~ 258 (387)
T PRK08960 181 LLSRDELAALSQALRARGGHLVVDEIYHGLTYG-VDAASVLEVDDDAFVLNSFSKYF-GMTGWRLGWLVAPPAAVPELEK 258 (387)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEEEccccccccC-CCCCChhhccCCEEEEeeccccc-CCcccEEEEEEcCHHHHHHHHH
Confidence 225778889999999999999998754332 222222221 247889999999 6666 999999998888766
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC-CCCHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK-KITGKIA 330 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~-~~~~~~~ 330 (1342)
....+..+ .+.+.+.++..++.+....++...++.+.++++.+.+.|++.|+.+...+.+++++|+++++. ..+.+++
T Consensus 259 ~~~~~~~~-~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f~~~~~~~~~~~~~~~~ 337 (387)
T PRK08960 259 LAQNLYIS-ASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAFYLYADISAFGGDAFAFC 337 (387)
T ss_pred HHhhhccC-CCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEEEEEeccccCCCHHHHH
Confidence 43333333 334555555555443223467777888999999999999988876433456789999998763 3456777
Q ss_pred HHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 331 ESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 331 ~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
..+++++||.+.|+..++.... .+++|++++.
T Consensus 338 ~~ll~~~gi~v~pg~~f~~~~~---~~~iRi~~~~ 369 (387)
T PRK08960 338 RHFLETEHVAFTPGLDFGRHQA---GQHVRFAYTQ 369 (387)
T ss_pred HHHHHhCCEEEcCchHhCCCCC---CCeEEEEecC
Confidence 7888888999998866653221 3579999886
|
|
| >KOG2028|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=217.83 Aligned_cols=301 Identities=21% Similarity=0.302 Sum_probs=236.3
Q ss_pred HHHHHHhhccCCCCccccccchhhH---HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC
Q psy13354 376 IIKVVLARKYRPSNFNTLIGQNHIS---KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452 (1342)
Q Consensus 376 ~~~~~l~~k~~p~~f~~lvGq~~~~---~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~ 452 (1342)
+...+|+++.||++++|.+||++++ ..|++.|+.++++. ++|+||||||||++|+.+++.....
T Consensus 123 ~qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipS-mIlWGppG~GKTtlArlia~tsk~~------------ 189 (554)
T KOG2028|consen 123 LQHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPS-MILWGPPGTGKTTLARLIASTSKKH------------ 189 (554)
T ss_pred hccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCc-eEEecCCCCchHHHHHHHHhhcCCC------------
Confidence 3456899999999999999999998 56888999999986 7999999999999999999865421
Q ss_pred CCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhc-CccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEE
Q psy13354 453 CGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYA-PINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIK 531 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~-p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~v 531 (1342)
+..|+++.+. ..++.+++++++.++.. .+..++.|++|||+|.+++..++.|+..+|+. .+.
T Consensus 190 --------------SyrfvelSAt-~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G--~I~ 252 (554)
T KOG2028|consen 190 --------------SYRFVELSAT-NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENG--DIT 252 (554)
T ss_pred --------------ceEEEEEecc-ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccC--ceE
Confidence 1246666554 46678999999988766 45667779999999999999999999999984 788
Q ss_pred EEEEeCCCCC--ChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhc-------------CCCcchhHHHHHHHhcCCcHHH
Q psy13354 532 FILATTEPQK--IPITVLSRCIQFNLKKMLHHDIVNNLCYILNKE-------------NIKFETSALNLIATGAQGSMRD 596 (1342)
Q Consensus 532 lIl~t~~~~k--l~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~-------------g~~i~~~al~~La~~~~g~lr~ 596 (1342)
||.+|++... +-.+|.|||.++-+.+++.+.+..+|.+-.... -+.+++.++++++..+.||.|.
T Consensus 253 lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 253 LIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred EEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 9999988774 456999999999999999999999998854411 1247889999999999999999
Q ss_pred HHHHHHHHHhhc---CC-----CCCHHHHHHHhccC----------cHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCH
Q psy13354 597 ALSLTDQAINYS---SE-----KITLNSMQEMLSII----------DQKYLIQILDALAEQDGNLILSIANKIEIYNLSY 658 (1342)
Q Consensus 597 a~~~L~kl~~~~---~~-----~It~e~V~~~v~~~----------~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~ 658 (1342)
++|.|+-.+... .+ .++.+||++.+..+ ..+.|..+-+.+..+|.+.++-++.++++.||+|
T Consensus 333 aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdP 412 (554)
T KOG2028|consen 333 ALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDP 412 (554)
T ss_pred HHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCc
Confidence 999998764332 12 39999999988543 3357888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCcccccCCchhHHH---HHHHHhcCCHHHHHHHHHHHHHH
Q psy13354 659 SIVLKDLSLLLHQISLIQISPEILIKDSPNYNE---IIQLSKKFNIEQIQLFYQISIHG 714 (1342)
Q Consensus 659 ~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~---~~~~a~~~s~~~L~~~l~~l~~~ 714 (1342)
+-+...|.++-. .+-|...+..+-. ..+.+....+.+-.-++.+|.-.
T Consensus 413 LYVARRlvR~AS--------EDIGlaD~S~L~~Avaa~qav~~vGmPE~dviLAqC~v~ 463 (554)
T KOG2028|consen 413 LYVARRLVRFAS--------EDIGLADPSALTQAVAAYQAVHFVGMPECDVILAQCVVY 463 (554)
T ss_pred HHHHHHHHHHhh--------cccCcCCchhhHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 998887776542 2334444333222 23555556666665666555543
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-25 Score=263.44 Aligned_cols=264 Identities=25% Similarity=0.252 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcc--
Q psy13354 808 LYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFS-- 884 (1342)
Q Consensus 808 ~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~-- 884 (1342)
.+.+.+.+.++. .++++..+ +|+++..+++ ..+|.+ ++..+.||.||+||| |.+++.+|++|+.+
T Consensus 106 ~v~~~L~~~l~~-~gv~i~~~~~V~~i~~~~~-~~~v~~-~~~~i~ad~VIlAtG---------~~s~p~~gs~G~g~~l 173 (400)
T TIGR00275 106 DVLDALLNELKE-LGVEILTNSKVKSIKKDDN-GFGVET-SGGEYEADKVILATG---------GLSYPQLGSTGDGYEI 173 (400)
T ss_pred HHHHHHHHHHHH-CCCEEEeCCEEEEEEecCC-eEEEEE-CCcEEEcCEEEECCC---------CcccCCCCCCcHHHHH
Confidence 345555566654 57888665 6999865554 456777 566899999999999 88889888888877
Q ss_pred hHHHHHHHHHcCCCccccccCCC--cccccCccccc--------cceeecCCCCCCCcccccCCCCCCCCccccchhhcc
Q psy13354 885 TTSLAKRLKELQLSHGRLKTGTP--PRIDKRTIDFS--------KMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTN 954 (1342)
Q Consensus 885 s~~l~~~l~~~g~~~~~~~~~~~--~r~~~~si~~~--------~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~ 954 (1342)
+..+++.+.+.-+.+++++...| ..+.+-+++-. ....+.|| +.|||+++|||+++ ++|.|+....
T Consensus 174 a~~lG~~i~~~~P~l~~l~~~~~~~~~l~Gv~~~~~~~~~~~~~~~~~~~g~-llft~~gisG~~vl---~~s~~~~~~~ 249 (400)
T TIGR00275 174 AESLGHTIVPPVPALVPLTLDESFLKELSGISLDGVVLSLVNGKKVLEEFGD-LLFTHFGLSGPAIL---DLSAFAARAL 249 (400)
T ss_pred HHHCCCCEecccceEeEEEeCCcccccCCCCcCccEEEEecCCcEEEeeccc-EEEECCCcCHHHHH---HHHHHHHHHh
Confidence 55555655555556666665554 45555555332 23356799 99999999999999 9999986432
Q ss_pred hhHHHHHHhhcccCCCCc-cccccccCCCCCCcccccccCCCCCccceeEeecccccceeecCccccCCCHHHHHHHHHh
Q psy13354 955 EKTHNIIRSEFKNSPIFS-GKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQS 1033 (1342)
Q Consensus 955 ~~~~~~i~~~~~~~p~~~-~~~~~~g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~ 1033 (1342)
. ...-....+|+.|.++ +++.....+....-.+|.++.......+-.|.+..++...|.++....++++++..++++.
T Consensus 250 ~-~~~~~~~~id~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (400)
T TIGR00275 250 L-KHKGVELEIDLLPDLSEEELEQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDPDLPAAQLSKKEIKKLVQL 328 (400)
T ss_pred h-cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHChhhhHHHHhhhhhhHHHHHHHHHHcCCCCCCChHHCCHHHHHHHHHH
Confidence 1 1122457789999997 3333222221111112222222222223335566667777888889999999999999999
Q ss_pred cccc----------cceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHHH------HHHHHHHHH
Q psy13354 1034 IDGM----------KNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEE------AASQGLLAG 1094 (1342)
Q Consensus 1034 i~gl----------e~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~e------A~~~G~~Ag 1094 (1342)
++.+ ++|+||+|||++++ |||+ |||||++||||||||++|++|.++ ||++|++||
T Consensus 329 lk~~~~~~~g~~~~~~a~vt~GGv~~~e--i~~~----~m~~k~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 329 LKNWPFTVSGTRGFKEAEVTAGGVSLKE--INPK----TMESKLVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred HhCCEEEecCcCccceeEEecCcccchh--cChh----hhhhcCCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 9877 99999999999999 9999 999999999999999999999995 999999998
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=234.21 Aligned_cols=316 Identities=19% Similarity=0.239 Sum_probs=216.6
Q ss_pred eeeeecCCCCcHH----HHHHHhHHHHhccccCCC-CCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 30 IELIASENYTSLA----VMEAQGTLLTNKYAEGYP-GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 30 i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~-~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
+..+++++|++.. +++++.+.+. .++.+.. ++.+..+.....++++ .+++++|.+.+++++ ||++|+..
T Consensus 56 ~~~~~~~~YL~l~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~le~----~la~~~g~~~~~~~~-sG~~An~~ 129 (407)
T PRK07179 56 AIILQSNDYLNLSGHPDIIKAQIAALQ-EEGDSLVMSAVFLHDDSPKPQFEK----KLAAFTGFESCLLCQ-SGWAANVG 129 (407)
T ss_pred EEEeecCCccCCCCCHHHHHHHHHHHH-HhCCCCCccccccCCchHHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHH
Confidence 4467889998865 8999888885 4432222 2333344455566665 899999998776655 99999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
+++++..+||.|++... .|.+....+...|. ++++++. .|++++++.+++.++++|++++.+++ ...|
T Consensus 130 ~l~~l~~~g~~v~~~~~---~h~s~~~~~~~~g~--~~~~~~~-----~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~p 199 (407)
T PRK07179 130 LLQTIADPNTPVYIDFF---AHMSLWEGVRAAGA--QAHPFRH-----NDVDHLRRQIERHGPGIIVVDSVYSTTGTIAP 199 (407)
T ss_pred HHHHhCCCCCEEEEECC---cCHHHHHHHHHCCC--eEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCcccc
Confidence 99999999999997553 44444444445555 4444443 38999999997655777777655544 5559
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcC-C----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCcc
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAG-E----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~-~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~ 257 (1342)
+++|.++|++||++||+||+|+.|..+.. . ..+....+|++++|+||++ |+.+|++++++++++.+.....+..
T Consensus 200 l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~-g~~~G~l~~~~~~~~~~~~~~~~~~ 278 (407)
T PRK07179 200 LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAF-AGRAGIITCPRELAEYVPFVSYPAI 278 (407)
T ss_pred HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhh-hccCeEEEeCHHHHHHHHHhCcCee
Confidence 99999999999999999999987654321 1 1111123589999999999 5668999999988888765444444
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHC
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESA 337 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~ 337 (1342)
++++..+...++..+..+... .....++++.++++++.+.|.+.|+++. ..++++++.++... ..+.+...|.++
T Consensus 279 ~~~t~~~~~~aa~~aal~~~~-~~~~~~~~l~~~~~~l~~~L~~~g~~v~---~~~~i~~l~~~~~~-~~~~~~~~L~~~ 353 (407)
T PRK07179 279 FSSTLLPHEIAGLEATLEVIE-SADDRRARLHANARFLREGLSELGYNIR---SESQIIALETGSER-NTEVLRDALEER 353 (407)
T ss_pred eCCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHcCCCCC---CCCCEEEEEeCCHH-HHHHHHHHHHHC
Confidence 444433344333333344443 3345678999999999999999888764 23567777765322 234455555567
Q ss_pred CceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 338 NIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 338 GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
||.+.....|..+.. .+.+|++++..+|.+
T Consensus 354 GI~~~~~~~p~~~~~---~~~lRis~~~~~t~e 383 (407)
T PRK07179 354 NVFGAVFCAPATPKN---RNLIRLSLNADLTAS 383 (407)
T ss_pred CceEeeecCCCCCCC---CceEEEEECCCCCHH
Confidence 999776656655432 467999999887743
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=232.34 Aligned_cols=342 Identities=13% Similarity=0.106 Sum_probs=230.9
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRL 82 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~l 82 (1342)
++++....+..+..+....++....+.|..+.+. .++.+.+++...+.+. ....|....+..++.+++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~------~~~~Y~~~~G~~~lr~~~~~~l 78 (389)
T PRK05957 5 TSRMDAVQSPIIPVVGQLIRENPGTISLGQGVVSYPPPPEAIEALNNFLANP------ENHKYQAVQGIPPLLEAITQKL 78 (389)
T ss_pred hHHHHhcCCcHHHHHHHHHHhCCCeEEccCCCCCCCCCHHHHHHHHHHHhCC------CCCCCCCCCCCHHHHHHHHHHH
Confidence 3444444444444444444444455888877653 3334888877665321 1123444566678889899999
Q ss_pred HHHhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHH
Q psy13354 83 KKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKV 158 (1342)
Q Consensus 83 a~~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~L 158 (1342)
++++|.+ +.+++++|+++|+..++.+++.+||+|++.++.+..+ .......|. +++.++.++++.+|++++
T Consensus 79 ~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~---~~~~~~~g~--~~~~v~~~~~~~~d~~~l 153 (389)
T PRK05957 79 QQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNH---EMAITMAGC--QPILVPTDDNYQLQPEAI 153 (389)
T ss_pred HHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCH---HHHHHhcCC--EEEEeecCCCCCcCHHHH
Confidence 9998863 3566665888899999999999999999877555443 333455566 555556667788999999
Q ss_pred HHHHHhcCCeEEEEcCCCCC-c-cc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-----CcEEEecCC
Q psy13354 159 EYLAKKNKPKLIIAGASAYS-Q-YI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-----ADFITSTTH 228 (1342)
Q Consensus 159 e~~i~~~~~~liv~~~s~~~-~-~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-----~Divv~S~s 228 (1342)
++.+++ +++++++++++|| + .. ++++|+++|+++|++||+||+|....+....+...... ..++++|+|
T Consensus 154 ~~~i~~-~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 232 (389)
T PRK05957 154 EQAITP-KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLS 232 (389)
T ss_pred HHhcCc-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecch
Confidence 998875 4556566566666 2 22 49999999999999999999987654432221221111 247889999
Q ss_pred ccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-Cc
Q psy13354 229 KSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GI 304 (1342)
Q Consensus 229 K~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~ 304 (1342)
|.+ |+.| ||+++++++++.+.........+ ++.+.+.++..++.+ ...++++..+++.++++.+.+.|++. ++
T Consensus 233 K~~-g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 309 (389)
T PRK05957 233 KAY-GFASWRIGYMVIPIHLLEAIKKIQDTILIC-PPVVSQYAALGALQV-GKSYCQQHLPEIAQVRQILLKSLGQLQDR 309 (389)
T ss_pred hhc-cCccceeEEEecCHHHHHHHHHHHhhcccC-CCcHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999 7777 99999999998887654333333 333445544444432 22356777788899999999999875 32
Q ss_pred -EEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 305 -RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 305 -~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
.+ .++.+++++|+.++....+.+++..+++++||.+.++..++... .+++|++++..
T Consensus 310 ~~~-~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~----~~~iRis~~~~ 367 (389)
T PRK05957 310 CTL-HPANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKN----GCYLRIAYGAL 367 (389)
T ss_pred ccc-cCCCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCC----CCEEEEEEecC
Confidence 33 33556789999987655566888888887899999876554332 35799999764
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=235.52 Aligned_cols=317 Identities=22% Similarity=0.272 Sum_probs=215.2
Q ss_pred eeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 30 IELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 30 i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
...++++||++.. +++++.+.+. .+..+..+++.+ +....+.+|++ .+++++|.+++++++ +|++|+..
T Consensus 48 ~~~~~sn~yl~l~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~Le~----~la~~~g~~~~i~~~-sG~~a~~~ 121 (410)
T PRK13392 48 VTIWCSNDYLGMGQHPDVIGAMVDALD-RYGAGAGGTRNISGTSHPHVLLER----ELADLHGKESALLFT-SGYVSNDA 121 (410)
T ss_pred EEEEECCCccCCCCCHHHHHHHHHHHH-HcCCCCchhhhcccChHHHHHHHH----HHHHHhCCCCEEEEC-cHHHHHHH
Confidence 4467778887663 8999888774 555444444333 33334555665 899999988777777 99999999
Q ss_pred HHHHcc--CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---cCCeEEEEcCCCCC-
Q psy13354 105 VFFSVL--NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---NKPKLIIAGASAYS- 178 (1342)
Q Consensus 105 al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~~~~liv~~~s~~~- 178 (1342)
++..+. .+||.|++....| .+....+...|..+.. ++.+ |.+.+++.+.. .++++|++++++++
T Consensus 122 ~i~~l~~~~~g~~vi~~~~~h---~s~~~~~~~~g~~~~~--~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~t 191 (410)
T PRK13392 122 ALSTLGKLLPGCVILSDALNH---ASMIEGIRRSGAEKQV--FRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMD 191 (410)
T ss_pred HHHHHhcCCCCCEEEEehhhh---HHHHHHHHHcCCeEEE--EeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCC
Confidence 998775 3899887554333 3444445566664433 3333 55566665542 34567777666665
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-C----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhc
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-E----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSA 252 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~ 252 (1342)
...++++|.++|++||+++|+||+|+.|.++.. . .....+..|++++|+||+| |..|||+++++++++.++..
T Consensus 192 G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~-g~~GG~~~~~~~~~~~l~~~ 270 (410)
T PRK13392 192 GDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAF-GCLGGYIAASADLIDFVRSF 270 (410)
T ss_pred cccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhh-hcccchhhcCHHHHHHHHHh
Confidence 455999999999999999999999997765321 1 1122234689999999999 67789999999999988776
Q ss_pred cCCccccCCcHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 253 VFPGIQGGPLMHV-IAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 253 ~~~~~~~~~~~~~-~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
..++.+++..++. ++++..++ +... ......+++.++++++.+.|.+.|+++.. +.++++.+.++......++..
T Consensus 271 ~~~~~~s~~~~~~~~~a~~aaL-~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~i~~~~~~~~~~~~~ 346 (410)
T PRK13392 271 APGFIFTTALPPAVAAGATAAI-RHLK-TSQTERDAHQDRVAALKAKLNANGIPVMP--SPSHIVPVMVGDPTLCKAISD 346 (410)
T ss_pred CcchhccCcCCHHHHHHHHHHH-HHHh-cCHHHHHHHHHHHHHHHHHHHHcCCCCCC--CCCCEEEEEeCCHHHHHHHHH
Confidence 5555444443433 34444444 4433 23345678899999999999998887643 445666666543222346677
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.+++++||.+.+..+|..+.+ ..++|++++..++.+
T Consensus 347 ~L~~~~GI~v~~~~~p~~~~~---~~~lRis~~~~~t~e 382 (410)
T PRK13392 347 RLMSEHGIYIQPINYPTVPRG---TERLRITPTPLHDDE 382 (410)
T ss_pred HHHHhCCEEEeeeCCCCCCCC---CceEEEEECCCCCHH
Confidence 777777999999877766543 467999998887753
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-21 Score=231.32 Aligned_cols=320 Identities=10% Similarity=0.083 Sum_probs=221.5
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CC-CceEecCCHHHH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AE-AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~-~~vi~~~sGs~A 101 (1342)
...++|..+++..+ +.+.+++.+.+.+. ...|....+..++++++++++.+++| .+ +.+++++||++|
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-------~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a 96 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAAAALADG-------ETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQA 96 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhcC-------CCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHH
Confidence 35688888876554 34888877766421 12255556667899988889888878 33 445555588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
+..++.+++++||+|++..+.|+.+ ...+...|..+..+++..+ .+|.+|++++++.+++ +++++++++++|| +
T Consensus 97 l~~~~~~l~~~gd~vl~~~p~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~p~NPtG 172 (382)
T PRK06108 97 LMLAAQALVGPGDEVVAVTPLWPNL---VAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITP-RTRALFINSPNNPTG 172 (382)
T ss_pred HHHHHHHhcCCCCEEEEeCCCccch---HHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc-cceEEEEECCCCCCC
Confidence 9999999999999999877655443 4445666774444443322 3467999999998865 4555566566666 2
Q ss_pred ----ccCHHHHHHHHHHcCCEEEEEcccchhhhh-cCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechhH
Q psy13354 180 ----YIDFERFYHIAKNINSYFMVDMAHYAGLIA-AGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKYK 246 (1342)
Q Consensus 180 ----~~~l~~I~~la~~~gi~LIvDea~~~g~~~-~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l~ 246 (1342)
..++++|+++|+++|++||+|++|....+. ....+.... ...++++|+||.+ |++| ||++++++++
T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~~~~~~~~~ 251 (382)
T PRK06108 173 WTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNW-AMTGWRLGWLVAPPALG 251 (382)
T ss_pred cccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhc-cCcccceeeeeCCHHHH
Confidence 226899999999999999999999876553 112221111 1347899999999 6556 9999999888
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCC
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKI 325 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~ 325 (1342)
+.+.... .+...+++.+.+.++..++.+ ...++++.++++.++++++.+.|.+. |+.+.. +.+++++|+.+++...
T Consensus 252 ~~~~~~~-~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-p~~g~~~~~~l~~~~~ 328 (382)
T PRK06108 252 QVLEKLI-EYNTSCVAQFVQRAAVAALDE-GEDFVAELVARLRRSRDHLVDALRALPGVEVAK-PDGAMYAFFRIPGVTD 328 (382)
T ss_pred HHHHHHH-HhcccCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC-CCeeEEEEEeCCCCCC
Confidence 8876542 222233334455554444433 23366778889999999999999876 676643 4567889999876555
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 329 ~~~~~~~ll~~~gV~v~pg~~f~~~~----~~~~Ris~~~ 364 (382)
T PRK06108 329 SLALAKRLVDEAGLGLAPGTAFGPGG----EGFLRWCFAR 364 (382)
T ss_pred HHHHHHHHHHhCCEEEeCchhhCCCC----CCEEEEEecC
Confidence 56788888888899998765543221 4679999887
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-21 Score=233.21 Aligned_cols=320 Identities=21% Similarity=0.233 Sum_probs=222.5
Q ss_pred ceeeeecCCC----CcHHHHHHHhHHHHhccccCCCCCCc-cCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENY----TSLAVMEAQGTLLTNKYAEGYPGKRY-YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~----l~~~v~eal~~~l~~~~~~g~~~~~~-~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.+++ ++.+| .+|.+.+++.+++. .|+.++.+++. |+..+.+.++++ .++++++.++.++++ +|..++.
T Consensus 111 ~id~-~s~~~lgl~~~~~i~ea~~~al~-~~G~g~~g~r~~yg~~~~~~~Lee----~La~~~~~~~~i~~s-~G~~a~~ 183 (481)
T PLN02822 111 VVNF-ASANYLGLIGNEKIKESCTSALE-KYGVGSCGPRGFYGTIDVHLDCET----KIAKFLGTPDSILYS-YGLSTIF 183 (481)
T ss_pred EEEe-ECCCcCCCCCCHHHHHHHHHHHH-HhCCCCcccCccccCHHHHHHHHH----HHHHHhCCCCEEEEC-CHHHHHH
Confidence 3544 44545 34569999999885 56656665544 566777777777 899999988888888 6766899
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---------cCCeEEEEcC
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---------NKPKLIIAGA 174 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---------~~~~liv~~~ 174 (1342)
.++.+++++||.|++.. ..|.+....+...+. +++.++++ |.++++..+.+ ..+++|++.+
T Consensus 184 sai~a~~~~gd~Ii~d~---~~H~s~~~~~~ls~~--~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~ 253 (481)
T PLN02822 184 SVIPAFCKKGDIIVADE---GVHWGIQNGLYLSRS--TIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEA 253 (481)
T ss_pred HHHHHhCCCCCEEEEeC---CccHHHHHHHHHcCC--eEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEec
Confidence 99999999999999554 344555445556665 55556665 44444443321 1235666644
Q ss_pred CC--CCcccCHHHHHHHHHHcCCEEEEEcccchhhhhc-C----CCCCC-CCCCcEEEecCCccCCCCCeeEEEEechhH
Q psy13354 175 SA--YSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAA-G----EYPNP-VPFADFITSTTHKSLRGPRGGFILMKKKYK 246 (1342)
Q Consensus 175 s~--~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~----~~~~~-l~~~Divv~S~sK~l~gp~GG~iv~~~~l~ 246 (1342)
.. .+...++++|+++|++||++||+||+|++|.++. + .+.+. ....|++++|++|++ |+.|||++++++++
T Consensus 254 i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKal-g~~GG~i~g~~~ii 332 (481)
T PLN02822 254 IYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHAL-ATEGGFCTGSARVV 332 (481)
T ss_pred CCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhh-hhCCeEEEcCHHHH
Confidence 22 2355689999999999999999999999887653 1 22222 124689999999999 88899999999999
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCC-
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKK- 324 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~- 324 (1342)
+.++.....+.++++..+..++++.+..+.+. ...+..++++++++++.+.|.+. |+++.. +..++++++.+++..
T Consensus 333 ~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~-~~~spi~~l~l~~~~~ 410 (481)
T PLN02822 333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLE-DNPSVLAKLKENIALLHKGLSDIPGLSIGS-NTLSPIVFLHLEKSTG 410 (481)
T ss_pred HHHHhcCCceeeccccCHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHhcCCcccCC-CCCCCEEEEEeCCCcc
Confidence 99887666667765444444444433444443 22567889999999999999985 777643 456888988886431
Q ss_pred ----C---CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 325 ----I---TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 325 ----~---~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
. ..+++..+++++||++.+..+|...... .+.++|++++..++.
T Consensus 411 ~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~-~~~~lRi~is~~~t~ 461 (481)
T PLN02822 411 SAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCR-LPVGIRLFVSAGHTE 461 (481)
T ss_pred cccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCC-CCCcEEEEECCCCCH
Confidence 1 2467888887789999987665543211 124699998887664
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-21 Score=232.71 Aligned_cols=319 Identities=24% Similarity=0.270 Sum_probs=216.4
Q ss_pred ceeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.+..++++||++.. +++++.+.+. .+..+..+++.+ +..+.+.++++ .+++++|.+.+++++ +|++|+.
T Consensus 47 ~~~~~~s~dylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~g~~~~~~~l~~----~la~~~g~~~~~~~~-sG~~an~ 120 (407)
T PRK09064 47 EVTVWCSNDYLGMGQHPKVIEAMIEALD-RCGAGAGGTRNISGTNHYHVELER----ELADLHGKEAALVFT-SGYVSND 120 (407)
T ss_pred eEEEEECCCCcCCCCCHHHHHHHHHHHH-HcCCCCCCcCcCccCHHHHHHHHH----HHHHHhCCCcEEEEC-cHHHHHH
Confidence 35578889997665 8888888774 454444444433 34555555555 888899977777777 9999999
Q ss_pred HHHHHccC--CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---cCCeEEEEcCCCCC
Q psy13354 104 AVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---NKPKLIIAGASAYS 178 (1342)
Q Consensus 104 ~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~~~~liv~~~s~~~ 178 (1342)
.++..+.. +++.|+.....| .+....+...+.. ...++.+ |++++++.+.. .++++|++++.+++
T Consensus 121 ~ai~~l~~~~~~~~i~~~~~~h---~s~~~~~~~~~~~--~~~~~~~-----d~~~le~~l~~~~~~~~~~v~~~~v~s~ 190 (407)
T PRK09064 121 ATLSTLAKLIPDCVIFSDELNH---ASMIEGIRRSRCE--KHIFRHN-----DVAHLEELLAAADPDRPKLIAFESVYSM 190 (407)
T ss_pred HHHHHHhCCCCCCEEEEeCcch---HHHHHHHHHcCCc--EEEECCC-----CHHHHHHHHHhccCCCCeEEEEeCCCCC
Confidence 99888754 777666443333 3333333444543 3334433 78888887763 34567777665444
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CC----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhh
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GE----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~ 251 (1342)
...++++|.++|++||++||+||+|+.|.++. +. +.+..+..|++++||||+| |+.|||+++++++++.+..
T Consensus 191 ~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~-g~~GG~~~~~~~~~~~l~~ 269 (407)
T PRK09064 191 DGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAF-GVMGGYIAGSAALVDAVRS 269 (407)
T ss_pred CccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhh-hccCceEecCHHHHHHHHH
Confidence 45599999999999999999999998775532 11 1112223589999999999 7788999999999888876
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
...++.++++.++..++++.+..+..... ...++++.++++++.+.|.+.|+++.. +.++++++.++......++..
T Consensus 270 ~~~~~~~t~~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~iv~i~~~~~~~~~~l~~ 346 (407)
T PRK09064 270 YAPGFIFTTSLPPAIAAAALASIRHLKES-NEERERHQERAAKLKAALDAAGIPVMP--NESHIVPVMVGDPEKCKKASD 346 (407)
T ss_pred hCccccccCcCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHcCCCCCC--CCCCEEEEEeCCHHHHHHHHH
Confidence 55555444434444444444445554422 344678899999999999998887643 346677777654323456777
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.+++++||.+.+..+|..+.+ ..++|++++..++.+
T Consensus 347 ~L~~~~gi~v~~~~~p~~~~~---~~~lRis~~~~~t~e 382 (407)
T PRK09064 347 MLLEEHGIYVQPINYPTVPRG---TERLRITPTPFHTDE 382 (407)
T ss_pred HHHHhCCEEEeeECCCCCCCC---CceEEEEeCCCCCHH
Confidence 777777999998877766533 467999999887743
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-21 Score=229.26 Aligned_cols=338 Identities=14% Similarity=0.172 Sum_probs=229.3
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
++....+.+...+.... +..+.+.+..+++.+ ++.+.+++.+.+... ...|+...+..++++++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~-------~~~Y~~~~G~~~lr~~ia~~l~~ 81 (384)
T PRK12414 10 KLPDVGTTIFTVIGQLA-AQHDALNLSQGAPNFAPDPALVEGVARAMRDG-------HNQYAPMAGIAALREALAEKTER 81 (384)
T ss_pred hcccCCccHHHHHHHHH-HhCCeEEcCCCCCCCCCCHHHHHHHHHHHHhC-------CCCcCCCCCcHHHHHHHHHHHHH
Confidence 34334444444443332 334568888877555 344777777665421 12355556677999999999999
Q ss_pred HhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHH
Q psy13354 85 IFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVE 159 (1342)
Q Consensus 85 ~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le 159 (1342)
++|.+ +.+++++||++|+..++.+++.|||+|+++.+.++. ........|. +++.++.+ +++.+|++.++
T Consensus 82 ~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~---~~~~~~~~g~--~~~~v~~~~~~~~~d~~~l~ 156 (384)
T PRK12414 82 LYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDS---YAPIVRLQGA--TPVAIKLSPEDFRVNWDEVA 156 (384)
T ss_pred HhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccc---hHHHHHHcCC--EEEEEecCccccccCHHHHH
Confidence 88873 345555588999999999999999999987765544 3444455666 45555555 45789999999
Q ss_pred HHHHhcCCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--C---CCcEEEecCCc
Q psy13354 160 YLAKKNKPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--P---FADFITSTTHK 229 (1342)
Q Consensus 160 ~~i~~~~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~---~~Divv~S~sK 229 (1342)
+.+++ +++++++++++|| + ..++++|+++|++||++||+|++|....+......+.. . ...++++||||
T Consensus 157 ~~l~~-~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK 235 (384)
T PRK12414 157 AAITP-RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGK 235 (384)
T ss_pred hhcCc-ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccc
Confidence 98865 5667777666666 2 23799999999999999999999986544322221111 1 12488999999
Q ss_pred cCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEE
Q psy13354 230 SLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306 (1342)
Q Consensus 230 ~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~ 306 (1342)
.| |.+| ||+++++++++.+.........+ .+.+.+.++...+.. . ..+...++.+.++++.+.+.|++.|+.+
T Consensus 236 ~~-~~pGlRiG~~v~~~~l~~~l~~~~~~~~~~-~s~~~q~a~~~~l~~-~-~~~~~~~~~~~~~r~~l~~~L~~~g~~~ 311 (384)
T PRK12414 236 SY-HVTGWRVGYCLAPAELMDEIRKVHQFMVFS-ADTPMQHAFAEALAE-P-ASYLGLGAFYQRKRDLLARELAGSRFEL 311 (384)
T ss_pred cc-cCccceEEEEecCHHHHHHHHHHHhheecC-CCcHHHHHHHHHhcC-C-hHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 99 6667 99999999888877643222222 334455555444322 2 2344567888999999999999988776
Q ss_pred eeCCCCCeEEEEEccC--CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 307 VSGGTKSHIILVDLRN--KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~--~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
. ++.+++++|+++++ ...+.+++..+++++||.+.++..++.... ..+++|++++.
T Consensus 312 ~-~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~--~~~~iRis~~~ 369 (384)
T PRK12414 312 L-PSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGT--DTGLIRLSFSK 369 (384)
T ss_pred c-CCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCC--CCCEEEEEecC
Confidence 4 35677888888864 224567887888888999998765543221 13579999985
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-21 Score=231.52 Aligned_cols=338 Identities=13% Similarity=0.078 Sum_probs=231.2
Q ss_pred ccccchHHHHHHHHHHHhccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
+....+..+..+..... ..+.++|..+.... ++.+.+++.+.+.+. ...|+...+..+|++++++++.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~-~~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~-------~~~Y~~~~G~~~Lr~aia~~~~~~ 107 (413)
T PLN00175 36 LEKFKTTIFTQMSSLAI-KHGAINLGQGFPNFDGPDFVKEAAIQAIRDG-------KNQYARGFGVPELNSAIAERFKKD 107 (413)
T ss_pred hhcCCCCHHHHHHHHhh-cCCeEecCCCCCCCCCCHHHHHHHHHHHhcC-------CCCcCCCCCCHHHHHHHHHHHHHH
Confidence 33344444444433322 23567777766432 444788877776421 123555666779999888888887
Q ss_pred hCCC---C-ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHH
Q psy13354 86 FNAE---A-ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEY 160 (1342)
Q Consensus 86 ~g~~---~-~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~ 160 (1342)
+|.+ + .+++++|+++|+..++.++++|||+|++..+.++. +...+...|..+ ++++.+ +++.+|++.+++
T Consensus 108 ~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~---~~~~~~~~g~~~--~~v~~~~~~~~~~~~~l~~ 182 (413)
T PLN00175 108 TGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS---YEATLSMAGAKI--KTVTLRPPDFAVPEDELKA 182 (413)
T ss_pred hCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchh---HHHHHHHcCCEE--EEEECCcccCCCCHHHHHH
Confidence 7753 2 46666588899999999999999999987755543 444556677744 444554 357899999999
Q ss_pred HHHhcCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCcc
Q psy13354 161 LAKKNKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKS 230 (1342)
Q Consensus 161 ~i~~~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~ 230 (1342)
.+.+ +++++++++++|| ...++++|+++|++||++||+||+|....+.. .+.+... ...++++||||.
T Consensus 183 ~~~~-~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~s~~~~~~~~~~vi~i~SfSK~ 260 (413)
T PLN00175 183 AFTS-KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEG-DHISMASLPGMYERTVTMNSLGKT 260 (413)
T ss_pred hcCc-CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCC-cccChhhCCCCcCcEEEEecchhh
Confidence 8876 4566677676776 22368899999999999999999997665432 2221111 135888999999
Q ss_pred CCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 231 LRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 231 l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
| +.+| ||+++++++++.+....... ..+.+.+.+.++..++.. ...++++.++.+.++++.+.+.|.+.|+.+.
T Consensus 261 ~-~~~G~RiG~~v~~~~l~~~l~~~~~~~-~~~~s~~~Q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 337 (413)
T PLN00175 261 F-SLTGWKIGWAIAPPHLTWGVRQAHSFL-TFATATPMQWAAVAALRA-PESYYEELKRDYSAKKDILVEGLKEVGFKVY 337 (413)
T ss_pred c-cCcchheeeeEeCHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCeec
Confidence 9 6667 99999999988887643222 223445666666555533 2346788889999999999999999888764
Q ss_pred eCCCCCeEEEEEccCCC--CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNKK--ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~~--~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
. +.+++++|++++..+ .+.+++..+++++||.+.|+..++.... ...+++|++++.
T Consensus 338 ~-p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~-~~~~~iRls~~~ 395 (413)
T PLN00175 338 P-SSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPE-DGKNLVRFAFCK 395 (413)
T ss_pred C-CCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCC-CCCCEEEEEEcC
Confidence 3 567889999985422 2467888888888999998765532110 013579999984
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-21 Score=226.14 Aligned_cols=315 Identities=17% Similarity=0.148 Sum_probs=216.9
Q ss_pred eeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHH
Q psy13354 31 ELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 31 ~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~a 108 (1342)
.+.+++..+++.+.+++.+.+. .+ ..+...++.+++++.+++++|.+ ..+++++||++|+..++.+
T Consensus 2 ~~~~~~~~~~~~v~~a~~~~~~-----~~-------~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~ 69 (356)
T cd06451 2 LLIPGPSNVPPRVLKAMNRPML-----GH-------RSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSN 69 (356)
T ss_pred cccCCCcCCCHHHHHHhCCCcc-----CC-------CCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHH
Confidence 5788999999999999764431 11 11123455666888999999984 4466676889999999999
Q ss_pred ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHH
Q psy13354 109 VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERF 186 (1342)
Q Consensus 109 l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I 186 (1342)
++.+||+|++....+.+. .........|..+.. ++.++++.+|++++++.++++++++++++.++++ ...|+++|
T Consensus 70 ~~~~g~~vl~~~~~~~~~-~~~~~~~~~g~~~~~--v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i 146 (356)
T cd06451 70 LLEPGDKVLVGVNGVFGD-RWADMAERYGADVDV--VEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGI 146 (356)
T ss_pred hCCCCCEEEEecCCchhH-HHHHHHHHhCCCeEE--eecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHH
Confidence 999999999766433221 123345566764444 4556567899999999998756677666555444 55599999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhh--ccCC-------
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINS--AVFP------- 255 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~--~~~~------- 255 (1342)
.++|+++|+++++|++|++|... .+... .+|++++|+|||+++|.| |+++.++++++.+.. ....
T Consensus 147 ~~~a~~~~~~li~D~~~~~g~~~----~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (356)
T cd06451 147 GALAKKHDALLIVDAVSSLGGEP----FRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLL 222 (356)
T ss_pred HHHHHhcCCEEEEeeehhccCcc----ccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHH
Confidence 99999999999999999876431 11111 368999999999987878 999999988877653 1111
Q ss_pred ---------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC--CCeEEEEEccCCC
Q psy13354 256 ---------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT--KSHIILVDLRNKK 324 (1342)
Q Consensus 256 ---------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~--~~~~v~i~~~~~~ 324 (1342)
+..++++.+...++.+++......+++...++..++++++.+.|.+.|+++..++. ...+.|+.+++..
T Consensus 223 ~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 302 (356)
T cd06451 223 LLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEGV 302 (356)
T ss_pred HHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCCC
Confidence 12234444445555556555444467778889999999999999998988764322 2234566665433
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
...+++..+.++.||.+.++..+.. .+++|++++..++.+
T Consensus 303 ~~~~~~~~L~~~~gI~~~~g~~~~~------~~~iRis~~~~~~~e 342 (356)
T cd06451 303 DGDEVVRRLMKRYNIEIAGGLGPTA------GKVFRIGHMGEATRE 342 (356)
T ss_pred CHHHHHHHHHHhCCEEEeccccccc------CCEEEEecCCCCCHH
Confidence 3445565665545999987643321 347999999886643
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-21 Score=229.02 Aligned_cols=320 Identities=13% Similarity=0.106 Sum_probs=217.3
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---C-ceEecCCHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---A-ANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~-~vi~~~sGs~A 101 (1342)
+.+.+..++... ++.+.+++...+... ....|+...+..++++++++++.+.+|.+ + .+++++|+++|
T Consensus 36 ~~i~l~~g~p~~~~p~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~a 109 (394)
T PRK05942 36 DLIDLGMGNPDGAAPQPVIEAAIAALADP------QNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEG 109 (394)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhCC------CCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHH
Confidence 457776654332 333667666655311 11235555666789998888888776742 2 35556588889
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cc
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QY 180 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~ 180 (1342)
+..++.+++.|||+|+++.+.++.+. ..+...|..+..++++.+++|.+|++++++.+.+ +++++++++++|| +.
T Consensus 110 l~~~~~~~~~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~P~NPtG~ 185 (394)
T PRK05942 110 LTHLALAYVNPGDVVLVPSPAYPAHF---RGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQ-QAKILYFNYPSNPTTA 185 (394)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcchH---HHHHHcCCEEEEeecCCccCCccCHHHHHHhccc-cceEEEEcCCCCCCCC
Confidence 99999999999999998876665543 3334566644444333234567999999988865 5677777666666 22
Q ss_pred -c---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC---CCcEEEecCCccCCCCCe---eEEEEechhHHH
Q psy13354 181 -I---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP---FADFITSTTHKSLRGPRG---GFILMKKKYKKI 248 (1342)
Q Consensus 181 -~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~---~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~ 248 (1342)
. .+++|+++|++||++||+||+|....+......+. +. ...++++||||.| |.+| ||+++++++++.
T Consensus 186 ~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~~GlRiG~i~~~~~l~~~ 264 (394)
T PRK05942 186 TAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTY-NMAGWRVGFVVGNRHIIQG 264 (394)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhcc-CChhhheeeeecCHHHHHH
Confidence 2 48899999999999999999987655422221211 11 1347789999999 6666 999999999888
Q ss_pred HhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHH
Q psy13354 249 INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGK 328 (1342)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~ 328 (1342)
+......... +...+.+.++..++ +....+.++.++++.++++++.+.|.+.|+.+.. +.+++++|+.++....+.+
T Consensus 265 l~~~~~~~~~-~~~~~~q~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~~~~~f~~~~~~~~~~~~~ 341 (394)
T PRK05942 265 LRTLKTNLDY-GIFSALQKAAETAL-QLPDSYLQQVQERYRTRRDFLIQGLGELGWNIPP-TKATMYLWVPCPVGMGSTD 341 (394)
T ss_pred HHHHHhhccc-CCCHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHCCCeecC-CCeeeEEEEECCCCCCHHH
Confidence 8764332222 23344445444444 3333467778889999999999999988887643 4567799999876544567
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++..+++++||.+.++..++... .+++|++++.
T Consensus 342 ~~~~~l~~~gV~v~~g~~f~~~~----~~~iRis~~~ 374 (394)
T PRK05942 342 FALNVLQKTGVVVTPGNAFGEGG----EGYVRISLIA 374 (394)
T ss_pred HHHHHHHHCCEEEeCChhhCcCC----CCeEEEEecC
Confidence 77788888899998876554322 3579999963
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=226.92 Aligned_cols=319 Identities=14% Similarity=0.100 Sum_probs=220.6
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~ 100 (1342)
.+.+.+..+++.+ ++.+.+++.+.+.... ...|+...+..++++++++++.+.+|.+ ..+++++|+++
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~ 102 (383)
T TIGR03540 29 VDVISLGIGDPDLPTPKHIVEALCKAAENPE------NHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKE 102 (383)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhCCC------CCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHH
Confidence 3557787776553 3447788776653211 1224444556788898888887766653 24566657888
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++..++.+++++||+|+++.+.++.+ .......|. ++++++.+ ..+.+|++++++.+.+ +++++++++++||
T Consensus 103 ~l~~~~~~~~~~gd~vlv~~P~y~~~---~~~~~~~G~--~v~~v~~~~~~g~~~d~~~l~~~~~~-~~~~v~i~~P~NP 176 (383)
T TIGR03540 103 GIAHIPLAFVNPGDIVLVPDPGYPVY---RIGTLFAGG--EPYEMPLKEENGFLPDFDAIPEDIAK-KAKLMFINYPNNP 176 (383)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCcch---HHHHHhcCC--EEEEEecCcccCCccCHHHHHhhccc-cceEEEEeCCCCC
Confidence 99999999999999999877666544 334456676 44444554 3467899999988764 5677777766666
Q ss_pred -----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC---CCcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 -----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP---FADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 -----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~---~~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
+...+++|+++|++||++||+||+|....+......+. ++ ...++++||||+| |..| ||+++++++
T Consensus 177 tG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~i~~~~l 255 (383)
T TIGR03540 177 TGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTY-NMTGWRIGMAVGNADL 255 (383)
T ss_pred cCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEeccccc-CCccceeeEEeCCHHH
Confidence 22248999999999999999999997654432222221 11 1347789999999 7777 999999998
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKI 325 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~ 325 (1342)
++.+....... ..++..+.+.++..++.. ...+.++.++.+.++++.+.+.|++.|+.+.. +.+++++|+.+++...
T Consensus 256 ~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~~~~~~~~~~l~~~~~ 332 (383)
T TIGR03540 256 IAGLGKVKTNV-DSGVFQAIQYAAIAALNG-PQDVVKEIRKIYQRRRDLLLEALKKIGIDVEK-PKATFYVWVPVPEGYT 332 (383)
T ss_pred HHHHHHHHHhc-ccCCChHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhCCCEecC-CCcceEEEEECCCCCC
Confidence 88876543222 223334555555444433 23467788889999999999999999887643 4567889999976545
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.++...+++++||.+.++..++... .+++|++++.
T Consensus 333 ~~~~~~~ll~~~gi~v~~g~~f~~~~----~~~~Ris~~~ 368 (383)
T TIGR03540 333 SAEFAARLLEETGVVVTPGVGFGEYG----EGYIRISLTV 368 (383)
T ss_pred HHHHHHHHHHHCCEEEecchhhCccC----CCeEEEEecC
Confidence 66788888888899999876554322 3579999874
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-21 Score=228.22 Aligned_cols=319 Identities=14% Similarity=0.049 Sum_probs=219.1
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-C-ceEecCCHHH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-A-ANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~-~vi~~~sGs~ 100 (1342)
.+.+.+..++...+ +.+.+++.+.+.... ...|+...+..+|++++++++.+.+|. + + .+++++||++
T Consensus 32 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~ 105 (389)
T PRK08068 32 HDVINLGQGNPDQPTPEHIVEALQEAAENPA------NHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKA 105 (389)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCCC------CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 34577877753332 347777776664211 122444556678999888887766664 2 3 4556658888
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++..++.+++++||+|+++.+.++.+ ...+...|.. ++.++.+ .++.+|++++++.+.+ +++++++++|+||
T Consensus 106 ~l~~~~~~~~~~gd~vlv~~P~y~~~---~~~~~~~g~~--~~~i~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NP 179 (389)
T PRK08068 106 GLVELPQCLMNPGDTILVPDPGYPDY---LSGVALARAQ--FETMPLIAENNFLPDYTKIPEEVAE-KAKLMYLNYPNNP 179 (389)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcch---HHHHHhcCCE--EEEeecccccCCCCCHHHHHHhccc-cceEEEEECCCCC
Confidence 99999999999999999877665544 3444566764 4444554 3577899999988864 5677777766666
Q ss_pred -----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 -----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 -----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
....+++|+++|++||++||+||+|....+......+... ...++++||||.| |.+| ||+++++++
T Consensus 180 TG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~l 258 (389)
T PRK08068 180 TGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTF-NMAGWRVAFAVGNESV 258 (389)
T ss_pred CCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhcc-CCccceeEeEecCHHH
Confidence 2235789999999999999999998654332211112111 1348889999999 7677 999999999
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKI 325 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~ 325 (1342)
++.+......+..+. ..+.+.++..++.+. ..+++..++++.++++++.+.|++.|+.+. ++.+++++|+.+++...
T Consensus 259 ~~~l~~~~~~~~~~~-~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~-~~~g~~~~~v~~~~~~~ 335 (389)
T PRK08068 259 IEAINLLQDHLFVSL-FGAIQDAAIEALLSD-QSCVAELVARYESRRNAFISACREIGWEVD-APKGSFFAWMPVPKGYT 335 (389)
T ss_pred HHHHHHHHhhccCCC-ChHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CCCeeEEEEEECCCCCC
Confidence 888876544443333 233444444444322 246778899999999999999999888653 35667889999976545
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.++...+++++||.+.++..++..+ .+++|++++.
T Consensus 336 ~~~~~~~l~~~~gi~v~pg~~f~~~~----~~~iRi~~~~ 371 (389)
T PRK08068 336 SEQFADLLLEKAHVAVAPGNGFGEHG----EGYVRVGLLT 371 (389)
T ss_pred HHHHHHHHHHhCCEEEecchHhCccC----CCeEEEEEcC
Confidence 66777888877899999876554322 3579999964
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=228.96 Aligned_cols=319 Identities=22% Similarity=0.252 Sum_probs=216.9
Q ss_pred ceeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.+..++++||+++. +++++.+.+. .+..+..+++.. +..+.+.++++ .+++++|.+.+++++ ||++|+.
T Consensus 46 ~~~~~~sn~ylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~le~----~la~~~g~~~~~~~~-SG~~An~ 119 (406)
T PRK13393 46 EVTVWCSNDYLGMGQHPAVLAAMHEALD-TCGAGAGGTRNISGTNHYHVLLEA----ELADLHGKEAALLFT-SGYVSNW 119 (406)
T ss_pred cEEEeecccccCCCCCHHHHHHHHHHHH-HcCCCCcccccccCChHHHHHHHH----HHHHHhCCCcEEEeC-CcHHHHH
Confidence 35568889998874 9999888885 565444444433 22334445554 899999988887888 9999999
Q ss_pred HHHHHccC--CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---cCCeEEEEcCCCCC
Q psy13354 104 AVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---NKPKLIIAGASAYS 178 (1342)
Q Consensus 104 ~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~~~~liv~~~s~~~ 178 (1342)
.++.++.. +||.|+.....|+ +....+...|. ....++.. |++++++.+.. .++++|++++.+++
T Consensus 120 ~ai~~l~~~~~g~~I~~~~~~H~---s~~~~~~~~g~--~~~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~~~v~~~ 189 (406)
T PRK13393 120 AALSTLGSRLPGCVILSDELNHA---SMIEGIRHSRA--EKRIFRHN-----DPADLERKLSDLDPHRPKLVAFESVYSM 189 (406)
T ss_pred HHHHHhhcCCCCCEEEEccchhH---HHHHHHHHcCC--eEEEeCCC-----CHHHHHHHHHhccCCCCEEEEEcCCCCC
Confidence 99998755 7887775554443 33333444555 33334443 77888877753 24566666554433
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-C----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhh
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-E----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~ 251 (1342)
...|+++|.++|++||+++|+||+|+.|.++.. . ..+..+..|++++|++|++ |..|||+++++++++.+..
T Consensus 190 ~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~-g~~GG~~~~~~~~~~~l~~ 268 (406)
T PRK13393 190 DGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAF-GVMGGYITGSAALCDFIRS 268 (406)
T ss_pred CCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhh-cccCceeeCCHHHHHHHHH
Confidence 555999999999999999999999997765431 1 1111223588899999999 7788999999999888877
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
...++.++++.++..++++.+..+...... ..+.++.++++++.+.|.+.|+++.. ..++++.+.+.+.....++..
T Consensus 269 ~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~-~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~i~~v~~~~~~~~~~l~~ 345 (406)
T PRK13393 269 FASGFIFTTSLPPAVAAGALASVRHLKASS-AERERHQDRVARLRARLDKAGIPHLP--NPSHIVPVMVGDPVLCKQISD 345 (406)
T ss_pred hCcCceecCccCHHHHHHHHHHHHHHhhCH-HHHHHHHHHHHHHHHHHHHcCCCcCC--CCCCeEEEEeCCHHHHHHHHH
Confidence 655555544445544444444444443232 23467788899999999988877543 345666666543222346667
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.+++++||++.+..+|..+.+ ..++|++++..++.+
T Consensus 346 ~L~~~~Gi~v~~~~~p~~p~g---~~~iRis~~~~~t~e 381 (406)
T PRK13393 346 ELLDRYGIYVQPINYPTVPRG---TERLRITPSPLHTDA 381 (406)
T ss_pred HHHHhCCEEEEeECCCCCCCC---CceEEEEECCCCCHH
Confidence 777767999999877776643 467999999887753
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=227.80 Aligned_cols=321 Identities=10% Similarity=0.047 Sum_probs=219.1
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-C-ceEecCCHHH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-A-ANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~-~vi~~~sGs~ 100 (1342)
.+.+.+..+++.++ +.+.+++.+.+.... ...|....+..+|++++++++.+.+|. + + .+++++|+++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~ 103 (388)
T PRK07366 30 KELIDLSLGSSDLPAPAHALEAIAQSLHDPS------THGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQE 103 (388)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhCcc------cCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHH
Confidence 45688888876544 347777776653211 112444455678999888888777664 3 3 4666657788
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
|+..++.+++.|||+|++..+.++.+ ...+...|..+..+++..+..+.+|++++++.+.+ +++++++++++||
T Consensus 104 al~~~~~~l~~~gd~Vlv~~P~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPTG 179 (388)
T PRK07366 104 GTAHLPLAVLNPGDFALLLDPGYPSH---AGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLA-QARLMVLSYPHNPTT 179 (388)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcch---HHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcc-cceEEEEeCCCCCCC
Confidence 99999999999999999777555544 44446667744444433223467889998877654 4677777777777
Q ss_pred ---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCC-CCCCCCC-----CcEEEecCCccCCCCCe---eEEEEechhH
Q psy13354 179 ---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE-YPNPVPF-----ADFITSTTHKSLRGPRG---GFILMKKKYK 246 (1342)
Q Consensus 179 ---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~-~~~~l~~-----~Divv~S~sK~l~gp~G---G~iv~~~~l~ 246 (1342)
+...+++|+++|++||++||+||+|....+.... .++.... ..++++||||++ |.+| ||++++++++
T Consensus 180 ~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-g~~GlRiG~~v~~~~li 258 (388)
T PRK07366 180 AIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSY-NMGGFRIGFAIGNAQLI 258 (388)
T ss_pred ccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeeccccc-CCcchhheehcCCHHHH
Confidence 3336888999999999999999999865543221 2222111 236789999999 6666 9999999998
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC--
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK-- 324 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~-- 324 (1342)
+.+......+..+++ +..+.++..++... ..++++.++.+.++++++.+.|++.|+.+. .+.+++++|+.+++..
T Consensus 259 ~~l~~~~~~~~~~~~-~~~~~~a~~~l~~~-~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~g~f~~~~~~~~~~~ 335 (388)
T PRK07366 259 QALRQVKAVVDFNQY-RGILNGAIAALTGP-QATVQQTVQIFRQRRDAFINALHQIGWPVP-LPEATMYVWAKLPEPWQG 335 (388)
T ss_pred HHHHHHHhhcccCCC-HHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CCCeeEEEEEECCcccCC
Confidence 888765444443332 22333333344322 347788889999999999999998887643 3567899999997642
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 336 ~~~~~~~~l~~~~gv~v~pg~~f~~~~----~~~iRi~~~~ 372 (388)
T PRK07366 336 NSVEFCTQLVAQTGVAASPGSGFGKSG----EGYVRFALVH 372 (388)
T ss_pred CHHHHHHHHHHhCCEEEeCchHhCcCC----CCeEEEEecC
Confidence 245677788888899999876554322 3579999874
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=226.67 Aligned_cols=320 Identities=10% Similarity=0.087 Sum_probs=216.4
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.+.+..+++.+ ++.+.+++.+.+.+. . ..|....+..++++++++++...+|.. +.+++++|+++|
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-~------~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~a 102 (388)
T PRK07337 30 RDIIHMGIGEPDFTAPEPVVEAAARALRRG-V------TQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAA 102 (388)
T ss_pred CCEEEeCCcCCCCCCCHHHHHHHHHHHhcC-C------CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHH
Confidence 3557787776543 445788877766421 1 124444556788888888887766753 445555588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++++||+|+++.+.++.+ ...+...|.. ++.++.+ .++.+|++++++.+.+.++. +++++++||
T Consensus 103 l~~~~~~l~~~gd~Vlv~~p~y~~~---~~~~~~~g~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-v~l~~p~NPt 176 (388)
T PRK07337 103 LLLACLALVERGDEVLMPDPSYPCN---RHFVAAAEGR--PVLVPSGPAERFQLTAADVEAAWGERTRG-VLLASPSNPT 176 (388)
T ss_pred HHHHHHHhcCCCCEEEEeCCCchhh---HHHHHHcCCE--EEEeecCCccCCcCCHHHHHhhcCccceE-EEEECCCCCC
Confidence 9999999999999999887666554 3334555664 4444554 45789999999988764444 444555555
Q ss_pred c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-Cc-EEEecCCccCCCCCe---eEEEEechhHHHH
Q psy13354 179 Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-AD-FITSTTHKSLRGPRG---GFILMKKKYKKII 249 (1342)
Q Consensus 179 ~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~D-ivv~S~sK~l~gp~G---G~iv~~~~l~~~l 249 (1342)
+ ..++++|+++|+++|+++|+|++|....+ .+...+.... .+ ++++|+||.+ |.+| ||+++++++++.+
T Consensus 177 G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~~~~~~l~~~l 254 (388)
T PRK07337 177 GTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSY-DAAPVSALSLGDDVITINSFSKYF-NMTGWRLGWLVVPEALVGTF 254 (388)
T ss_pred CcCcCHHHHHHHHHHHHHCCCEEEEecccccccc-CCCCcChhhccCCEEEEEechhhc-CCchhheeeeecCHHHHHHH
Confidence 2 23689999999999999999999874333 2212222221 12 5688999999 6566 9999999888887
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC-----C
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK-----K 324 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~-----~ 324 (1342)
......+..+ .+.+.+.++..++.......+++.++.+.++++++.+.|++.|+.+...+.+++++|++++.. .
T Consensus 255 ~~~~~~~~~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~ 333 (388)
T PRK07337 255 EKLAQNLFIC-ASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGVAHPAAG 333 (388)
T ss_pred HHHHHHhccC-CChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEEEEEecccccCCCCC
Confidence 6643333322 334455554444432211246667888899999999999988876433456789999999752 2
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.+++..+++++||.+.++..++.... .+++|++++.
T Consensus 334 ~~~~~~~~ll~~~gv~v~pg~~f~~~~~---~~~~Ri~~~~ 371 (388)
T PRK07337 334 DSAALTQAMLHDAGVVLVPGRDFGPHAP---RDYIRLSYAT 371 (388)
T ss_pred CHHHHHHHHHHhCCEEEeCchhhCCCCC---CCEEEEEecC
Confidence 3456777888888999998766654322 4689999986
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=207.65 Aligned_cols=197 Identities=24% Similarity=0.347 Sum_probs=147.4
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHH----cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALD----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~----~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
..+++...||++|+|++||++++..+.-.++ .+...+.+|||||||+||||+|+.+|+++++
T Consensus 11 ~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~-------------- 76 (233)
T PF05496_consen 11 EAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV-------------- 76 (233)
T ss_dssp -S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT---------------
T ss_pred chhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC--------------
Confidence 3468899999999999999999988765443 2333345899999999999999999999974
Q ss_pred CCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC------
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP------ 527 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~------ 527 (1342)
++...++.......++..++..+ .+..|++|||+|.|++..++.|+.++|+..
T Consensus 77 ---------------~~~~~sg~~i~k~~dl~~il~~l------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG 135 (233)
T PF05496_consen 77 ---------------NFKITSGPAIEKAGDLAAILTNL------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIG 135 (233)
T ss_dssp ----------------EEEEECCC--SCHHHHHHHHT--------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBS
T ss_pred ---------------CeEeccchhhhhHHHHHHHHHhc------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEec
Confidence 35555554444455666665543 345699999999999999999999999731
Q ss_pred ------------CcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcH
Q psy13354 528 ------------KYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSM 594 (1342)
Q Consensus 528 ------------~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~l 594 (1342)
+...+|.+|++...+.+++++|+ .+.++..++.+++.+++.+.+...++.++++++..||+++.|.+
T Consensus 136 ~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 136 KGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp SSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSH
T ss_pred cccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCh
Confidence 34668999999999999999999 56689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q psy13354 595 RDALSLTDQAINYSS 609 (1342)
Q Consensus 595 r~a~~~L~kl~~~~~ 609 (1342)
|-|.++|..+-.|+.
T Consensus 216 RiAnrll~rvrD~a~ 230 (233)
T PF05496_consen 216 RIANRLLRRVRDFAQ 230 (233)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998877763
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=225.64 Aligned_cols=319 Identities=15% Similarity=0.103 Sum_probs=219.7
Q ss_pred cCceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHH
Q psy13354 27 NNNIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~ 100 (1342)
...+.+..+++..++ .+.+++.+.+.+.+ ..|....+..++++++++++.+.+|.. +.+++++||++
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~ 92 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLEQGY-------TSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQ 92 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHH
Confidence 356888888765543 36777766653211 124445567789998888888876653 24666658899
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
|+..++.++++|||+|++..+.++. ........|..+..++.+.++++.+|++++++++.+ +++++++++++|| +
T Consensus 93 al~~~~~~l~~~gd~vl~~~p~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG 168 (378)
T PRK07682 93 ALDVAMRAIINPGDEVLIVEPSFVS---YAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITA-KTKAILLCSPNNPTG 168 (378)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCchh---hHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCc-ccEEEEEECCCCCcC
Confidence 9999999999999999987765543 344455566644344333234678999999998865 4566655566666 2
Q ss_pred ----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C---CCCcEEEecCCccCCCCCe---eEEEEechhHH
Q psy13354 180 ----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V---PFADFITSTTHKSLRGPRG---GFILMKKKYKK 247 (1342)
Q Consensus 180 ----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l---~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~ 247 (1342)
..++++|+++|++||++||+||+|....+.. .+.+. + ....++++||||+| |.+| ||+++++++++
T Consensus 169 ~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~~~~~~~~i~ 246 (378)
T PRK07682 169 AVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDE-AYTSFASIKGMRERTILISGFSKGF-AMTGWRLGFIAAPVYFSE 246 (378)
T ss_pred cCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCC-CCCChhhcccccCCEEEEecCcccc-cChhhhhhhhhcCHHHHH
Confidence 2259999999999999999999998665432 11111 1 12358899999999 6667 99999999988
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC-CCC
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK-KIT 326 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~-~~~ 326 (1342)
.+..... +...+++...+.++..++ +....+.++.++.+.++++++.+.|.+.|+.+.. +.+++++|+.++.. ..+
T Consensus 247 ~l~~~~~-~~~~~~~~~~q~a~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-p~g~~~~~~~~~~~~~~~ 323 (378)
T PRK07682 247 AMLKIHQ-YSMMCAPTMAQFAALEAL-RAGNDDVIRMRDSYRKRRNFFVTSFNEIGLTCHV-PGGAFYAFPSISSTGLSS 323 (378)
T ss_pred HHHHHHH-hhccCCCHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHHHCCCccCC-CCeeEEEEEeccCCCCCH
Confidence 8875432 222233344555544444 3323357778888999999999999998887543 55678888887542 345
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+++..+++++||.+.++..++... .+++|++++.
T Consensus 324 ~~~~~~ll~~~gv~v~pg~~f~~~~----~~~iRis~~~ 358 (378)
T PRK07682 324 EEFAEQLLLEEKVAVVPGSVFGESG----EGFIRCSYAT 358 (378)
T ss_pred HHHHHHHHHhCCEEEcCchhhCcCC----CCeEEEEeCC
Confidence 6777788877899999876554321 4679999885
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=226.34 Aligned_cols=338 Identities=11% Similarity=0.116 Sum_probs=230.8
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
.|......+...+....+ ....+.+..+++..+ +.+.+++.+.+.... ..|....+..++++++++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~~a~~l~~ 82 (386)
T PRK09082 11 KLPNVGTTIFTVMSALAA-EHGAINLSQGFPDFDGPPYLVEALAYAMAAGH-------NQYPPMTGVAALREAIAAKTAR 82 (386)
T ss_pred HhhccCccHHHHHHHHHh-hCCEEEecCCCCCCCCCHHHHHHHHHHHHcCC-------CCCCCCCCcHHHHHHHHHHHHH
Confidence 444444444444443332 235577877765443 557888776653211 1244455667899989999998
Q ss_pred HhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHH
Q psy13354 85 IFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVE 159 (1342)
Q Consensus 85 ~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le 159 (1342)
++|.+ ..+++++||++|+..++.+++.|||+|++..+.++. ....+...|. +++.++.+ +++.+|+++++
T Consensus 83 ~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~---~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~ 157 (386)
T PRK09082 83 LYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDS---YAPAIELAGG--RAVRVALQPPDFRVDWQRFA 157 (386)
T ss_pred HhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchh---hHHHHHHcCC--EEEEEecCcccccCCHHHHH
Confidence 88864 246666588999999999999999999987755544 3444455666 55555654 46789999999
Q ss_pred HHHHhcCCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCc
Q psy13354 160 YLAKKNKPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHK 229 (1342)
Q Consensus 160 ~~i~~~~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK 229 (1342)
+.+++ +++++++++++|| + ..++++|+++|++||++||+|++|....+......+... ...++++||||
T Consensus 158 ~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK 236 (386)
T PRK09082 158 AAISP-RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGK 236 (386)
T ss_pred HhcCc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechh
Confidence 98875 4566666565566 2 247999999999999999999999765553322222211 13588899999
Q ss_pred cCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEE
Q psy13354 230 SLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306 (1342)
Q Consensus 230 ~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~ 306 (1342)
.+ |..| ||+++++++++.+........++ .+.+.+.+++..+ .....+.+++++.+.++++++.+.|++.|+++
T Consensus 237 ~~-~~~G~RiG~iv~~~~l~~~~~~~~~~~~~~-~~~~~q~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 313 (386)
T PRK09082 237 TY-HVTGWKVGYCVAPAALSAEFRKVHQYNTFT-VNTPAQLALADYL-RAEPEHYLELPAFYQAKRDRFRAALANSRFKL 313 (386)
T ss_pred hc-cchhhhhhhhhCCHHHHHHHHHHHhhhcCC-CChHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99 6667 99999999988877643322223 3344555444333 32334677788889999999999999888876
Q ss_pred eeCCCCCeEEEEEccC--CCCCHHHHHHHHHHCCceeeeccCCCC-CCCccccccccccccc
Q psy13354 307 VSGGTKSHIILVDLRN--KKITGKIAESILESANIICNKNSIPND-PEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~--~~~~~~~~~~ll~~~GI~v~~~~~p~~-~~~~~~~~~lRi~~~~ 365 (1342)
.. +.+++++|+++++ ...+.+++..+++++||.+.|+..++. +. ..+++|++++.
T Consensus 314 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~---~~~~~Ri~~~~ 371 (386)
T PRK09082 314 LP-CEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPF---PHRLVRLCFAK 371 (386)
T ss_pred cC-CCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCC---CCCEEEEEecC
Confidence 43 4667889999874 234557777788888999998765432 22 24679999875
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-20 Score=225.43 Aligned_cols=326 Identities=18% Similarity=0.198 Sum_probs=221.1
Q ss_pred CceeeeecC---CCCcHH----HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHH
Q psy13354 28 NNIELIASE---NYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQ 100 (1342)
Q Consensus 28 ~~i~l~a~~---n~l~~~----v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~ 100 (1342)
+.+.|..++ |+.+|+ +.+++.+++.. +...|++..+..+|++ .+++++|.+++++++ +|+.
T Consensus 37 ~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~-------g~~~Y~~~~g~~~Lre----aia~~~~~~~vv~t~-ggt~ 104 (460)
T PRK13238 37 NPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMR-------GDEAYAGSRSYYRLED----AVKDIFGYPYTIPTH-QGRA 104 (460)
T ss_pred CEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHh-------CCcccCCCCCHHHHHH----HHHHHhCCCcEEECC-CHHH
Confidence 567787777 466655 56666666531 1234777777888888 788888888776665 9999
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC------CC--CCCCHHHHHHHHHhc---CCeE
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN------KK--EKIDYKKVEYLAKKN---KPKL 169 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~------~~--~~id~e~Le~~i~~~---~~~l 169 (1342)
|+..+++++++||| |++++. .+.++...+...|.....++.+.. +. |.+|++.|++.++++ ++++
T Consensus 105 A~~~~~~all~pGD-Vii~~p---~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~ 180 (460)
T PRK13238 105 AEQILFPVLIKKGD-VVPSNY---HFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPF 180 (460)
T ss_pred HHHHHHHHhCCCCC-EEccCC---cccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeE
Confidence 99999999999999 775543 333344445667775544443211 13 349999999999863 4567
Q ss_pred EEEcCCCCC-c-----ccCHHHHHHHHHHcCCEEEEEcccchh-hhhc-----C-CCCC-------CCCCCcEEEecCCc
Q psy13354 170 IIAGASAYS-Q-----YIDFERFYHIAKNINSYFMVDMAHYAG-LIAA-----G-EYPN-------PVPFADFITSTTHK 229 (1342)
Q Consensus 170 iv~~~s~~~-~-----~~~l~~I~~la~~~gi~LIvDea~~~g-~~~~-----~-~~~~-------~l~~~Divv~S~sK 229 (1342)
|+++.++|+ + ..++++|+++|++||++||+|++|..+ .++. + ...+ ....+|++++|.+|
T Consensus 181 Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K 260 (460)
T PRK13238 181 IVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKK 260 (460)
T ss_pred EEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEeccc
Confidence 777666665 2 225789999999999999999988542 2111 1 1111 11347999999999
Q ss_pred cCCCCCeeEEEEe-chhHHHHhhcc---CCc-cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCc
Q psy13354 230 SLRGPRGGFILMK-KKYKKIINSAV---FPG-IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304 (1342)
Q Consensus 230 ~l~gp~GG~iv~~-~~l~~~l~~~~---~~~-~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~ 304 (1342)
.+.++.||+++++ +++.+.++... ..+ .+++.....+.|++.++.+...+ .+.+...+++++|.+.|.+.|+
T Consensus 261 ~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~---~~~~~~~~~~~~l~~~L~~~G~ 337 (460)
T PRK13238 261 DAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDE---DYLAYRIGQVEYLGEGLEEAGV 337 (460)
T ss_pred CCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhCh---HHHHHHHHHHHHHHHHHHHCCC
Confidence 9878889999998 47888877643 123 34444444467777777665442 3344455678999999999999
Q ss_pred EEeeCCCCCeEEEEEccCCC--------CCHHHHHHHHHHCCceeeeccCCCCCCCc-c------ccccccccccccccc
Q psy13354 305 RIVSGGTKSHIILVDLRNKK--------ITGKIAESILESANIICNKNSIPNDPEKP-Y------FTSGIRLGSSAITTR 369 (1342)
Q Consensus 305 ~~~~~~~~~~~v~i~~~~~~--------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~-~------~~~~lRi~~~~~~t~ 369 (1342)
++.. |.++|++++++.... .+.+++.+|+++.||.+.+...+..+..+ - ....+|++++ .+
T Consensus 338 ~~~~-p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~---rr 413 (460)
T PRK13238 338 PIQT-PAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIP---RR 413 (460)
T ss_pred CeEc-cCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecc---cc
Confidence 9865 677899999986531 25789999999999999886533322211 0 1356898877 33
Q ss_pred ccchhhH
Q psy13354 370 GFSELEI 376 (1342)
Q Consensus 370 ~~~e~d~ 376 (1342)
..+++.+
T Consensus 414 ~~~~~~~ 420 (460)
T PRK13238 414 VYTQSHM 420 (460)
T ss_pred cCCHHHH
Confidence 3444444
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=221.27 Aligned_cols=201 Identities=36% Similarity=0.534 Sum_probs=176.7
Q ss_pred cccccchhhHHHHHHHHH-cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCcc
Q psy13354 391 NTLIGQNHISKSLINALD-KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMD 469 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~-~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d 469 (1342)
++++|++.++..+...+. .++.+|++||+||||+|||++|..+|+.+.|.... ...+|..|+.|..+..+.|+|
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPT-----GLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcc-----cCCcccchhhhhHHhhcCCCc
Confidence 367888888888877776 78899999999999999999999999999997543 346788899999999999999
Q ss_pred EEEEccCCCcC----HHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHH
Q psy13354 470 YIEMDAASTRG----INEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPIT 545 (1342)
Q Consensus 470 ~~~i~~~~~~~----~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~ 545 (1342)
+.+++++...+ ++.++++.+.....+..+++|||||||+|.|+.++.|+|++++|+|+.++.||++||++.++.++
T Consensus 76 ~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 76 FLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred eEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccch
Confidence 99999986655 56788888888888888899999999999999999999999999999999999999999999999
Q ss_pred HhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 546 VLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 546 L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
|+|||+.+.|.+++......+.. ++++..++..++||+|.+.+.++.+...
T Consensus 156 I~SRc~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 156 IRSRCQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred hhhcceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999999966655555543 6788999999999999999998765544
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-20 Score=224.51 Aligned_cols=325 Identities=18% Similarity=0.200 Sum_probs=222.7
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC-C-CceEecCCHHHHHHHHHHHc--
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA-E-AANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~-~-~~vi~~~sGs~A~~~al~al-- 109 (1342)
++..+.|+.+.+++.+.+.+.+ +.+.+..+.......+..+.+++.+++++|. + +.+++++|+|+++..++.++
T Consensus 26 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~ 103 (401)
T PRK10874 26 AATALKPQAVIEATQQFYSLSA--GNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYAR 103 (401)
T ss_pred CcccCCCHHHHHHHHHHHHhcc--CCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhh
Confidence 4456777889999888775433 3332222222333455566688899999998 4 56777778999999999887
Q ss_pred --cCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 110 --LNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 110 --~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
+++||+|++++.++++.+..+ ......|+.+..+ +.+.++.+|++++++.+++ ++++++++.++++ ...|++
T Consensus 104 ~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v--~~~~~~~~d~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~~~ 180 (401)
T PRK10874 104 PRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKL--PLGADRLPDVDLLPELITP-RTRILALGQMSNVTGGCPDLA 180 (401)
T ss_pred ccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEE--ecCCCCcCCHHHHHHhcCc-CcEEEEEeCCcccccCcCCHH
Confidence 479999998887776543333 3345667755444 5566788899999999976 4566666555544 445999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc----------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV---------- 253 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~---------- 253 (1342)
+|+++|+++|+++++|++|+.|.+.... ... .+|++++|+||++ ||.| |++++++++.+.+....
T Consensus 181 ~i~~l~~~~g~~~ivD~a~~~g~~~~~~--~~~-~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 256 (401)
T PRK10874 181 RAITLAHQAGMVVMVDGAQGAVHFPADV--QAL-DIDFYAFSGHKLY-GPTGIGVLYGKSELLEAMSPWQGGGKMLTEVS 256 (401)
T ss_pred HHHHHHHHcCCEEEEECCcccccccCCc--hhc-CCCEEEEeccccc-CCCccEEEEEchHHHhcCCCeecCCcceEeec
Confidence 9999999999999999999876552111 111 3799999999977 8888 99999998877654221
Q ss_pred ----------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccC
Q psy13354 254 ----------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 254 ----------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~ 322 (1342)
..+..|+++.+...++..++....+.+.....++..+.++++.+.|.+. |+.+... +.++++++.+++
T Consensus 257 ~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~-~~~~i~~~~~~~ 335 (401)
T PRK10874 257 FDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRC-QDSSLLAFDFAG 335 (401)
T ss_pred cCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC-CCCcEEEEEECC
Confidence 1122356666677777777665544466677888888999999999886 7776543 345677777654
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCC-Ccc-cccccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPE-KPY-FTSGIRLGSSAITTRG 370 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~-~~~~lRi~~~~~~t~~ 370 (1342)
.. ..++. ..|.++||.+.++..+..+- ..+ ..+++|+|++.++|.+
T Consensus 336 ~~-~~~~~-~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~e 383 (401)
T PRK10874 336 VH-HSDLV-TLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQS 383 (401)
T ss_pred cC-HHHHH-HHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHH
Confidence 22 33444 55666799998765332110 000 0357999999987643
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-20 Score=223.12 Aligned_cols=339 Identities=14% Similarity=0.110 Sum_probs=225.6
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
++..........+..........|.+..+++.++ +.+.+++.+.+...+ ..|....+..++++++++++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~ 82 (391)
T PRK07309 10 QLDKIEVSLIRQFDQSISDIPGILKLTLGEPDFTTPDHVKEAAKRAIDANQ-------SHYTGMAGLLELRQAAADFVKE 82 (391)
T ss_pred hhhhcCccHHHHHHHHHHhcCCeEEcCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHHHHHHHH
Confidence 3444444344444332222245677877765443 337777776664211 1244455567899988888877
Q ss_pred HhCC----CCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHH
Q psy13354 85 IFNA----EAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVE 159 (1342)
Q Consensus 85 ~~g~----~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le 159 (1342)
.+|. ++.+++++|+++|+..++.+++.+||+|++.++.++++ .......|.. ++.++.++ ++.+|++.++
T Consensus 83 ~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~---~~~~~~~g~~--~~~~~~~~~~~~~d~~~l~ 157 (391)
T PRK07309 83 KYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGY---EPIVNLVGAE--IVEIDTTENDFVLTPEMLE 157 (391)
T ss_pred HhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcch---HHHHHHcCCE--EEEEecCCcCCcCCHHHHH
Confidence 6664 24466665889999999999999999999877555544 4445566764 45555543 4678999999
Q ss_pred HHHHhc--CCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC---CCcEEEecCCc
Q psy13354 160 YLAKKN--KPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP---FADFITSTTHK 229 (1342)
Q Consensus 160 ~~i~~~--~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~---~~Divv~S~sK 229 (1342)
+++++. +++++++++++|| + ..++++|+++|++||+++|+|++|....+......+... ...++++|+||
T Consensus 158 ~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 237 (391)
T PRK07309 158 KAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSK 237 (391)
T ss_pred HHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChh
Confidence 988752 3567776655655 2 236999999999999999999999865542222222111 12488999999
Q ss_pred cCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEE
Q psy13354 230 SLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306 (1342)
Q Consensus 230 ~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~ 306 (1342)
.+ |.+| ||+++++++++.+... ..+...+++.+.+.++..++.+ ...+....++++.++++++.+.|++.|+.+
T Consensus 238 ~~-g~~GlRvG~~v~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (391)
T PRK07309 238 SH-AMTGWRIGLIFAPAEFTAQLIKS-HQYLVTAATTMAQFAAVEALTN-GKDDALPMKKEYIKRRDYIIEKMTDLGFKI 314 (391)
T ss_pred hc-cCccceeEEEEeCHHHHHHHHHH-HhhcccCCChHHHHHHHHHHhC-ChhHHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 99 6667 9999999998888764 2333334445555555444432 222344567788889999999999888876
Q ss_pred eeCCCCCeEEEEEccCCC--CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 307 VSGGTKSHIILVDLRNKK--ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~~~--~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.. +.+++++|+.++... .+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 315 ~~-p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~----~~~iRi~~~~ 370 (391)
T PRK07309 315 IK-PDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYG----EGYVRLSYAA 370 (391)
T ss_pred cC-CCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCC----CCEEEEEecC
Confidence 43 456788898887532 345677788888899999876654322 4679999875
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=224.66 Aligned_cols=338 Identities=12% Similarity=0.098 Sum_probs=224.6
Q ss_pred ccccchHHHHHHHHHHHhccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
+....+.....+...... ...+.+..+.... ++.+.+++.+.+.+. ...|....+..++++++++++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~-------~~~Y~~~~G~~~lr~~ia~~~~~~ 79 (387)
T PRK08912 8 FADLPTTIFEVMSQLARE-HGAINLGQGFPDDPGPEDVRRAAADALLDG-------SNQYPPMMGLPELRQAVAAHYARF 79 (387)
T ss_pred HhhCCCCHHHHHHHHHhh-CCeEEccCCCCCCCCCHHHHHHHHHHHhcC-------CCCCCCCCCcHHHHHHHHHHHHHH
Confidence 333344344444333322 3457776665333 344666666554321 122455556678999888888877
Q ss_pred hCCC---C-ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHH
Q psy13354 86 FNAE---A-ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEY 160 (1342)
Q Consensus 86 ~g~~---~-~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~ 160 (1342)
+|.+ + .+++++|+++|+..++.+++++||+|++..+.++. ....+...|..+ +.++.+ +++.+|++.+++
T Consensus 80 ~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~---~~~~~~~~g~~~--~~~~~~~~~~~~~~~~l~~ 154 (387)
T PRK08912 80 QGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDA---YLPLIRRAGGVP--RLVRLEPPHWRLPRAALAA 154 (387)
T ss_pred hCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchh---hHHHHHHcCCEE--EEEecCcccCcCCHHHHHH
Confidence 7753 3 56666688999999999999999999987755543 344456667744 444554 467899999999
Q ss_pred HHHhcCCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-----CCCcEEEecCCcc
Q psy13354 161 LAKKNKPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-----PFADFITSTTHKS 230 (1342)
Q Consensus 161 ~i~~~~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-----~~~Divv~S~sK~ 230 (1342)
.+.+ +++++++++++|| + ..++++|+++|++||++||+|++|....+....+.+.. ...+++++|+||.
T Consensus 155 ~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 233 (387)
T PRK08912 155 AFSP-RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKI 233 (387)
T ss_pred HhCc-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhh
Confidence 8875 4556666566666 2 22588899999999999999999976544321221111 1236889999999
Q ss_pred CCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 231 LRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 231 l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
+ |+.| ||+++++++++.+........++.+ ...+.++..++.. ..+++++.++++.++++++.+.|...|+.+.
T Consensus 234 ~-g~~GlRiG~~~~~~~~~~~l~~~~~~~~~~~~-~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 310 (387)
T PRK08912 234 F-SLTGWKVGFVCAAPPLLRVLAKAHQFLTFTTP-PNLQAAVAYGLGK-PDDYFEGMRADLARSRDRLAAGLRRIGFPVL 310 (387)
T ss_pred c-cCcCceeEEEecCHHHHHHHHHHHhhccccCC-hHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 9 7677 9999999988887664333333332 2234444444432 2336677889999999999999999888764
Q ss_pred eCCCCCeEEEEEccCC---CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNK---KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~---~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
. +.+++++|+.++.. ..+.+++..+++++||.+.++..+..... +.+++|++++.
T Consensus 311 ~-~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~--~~~~iRl~~~~ 368 (387)
T PRK08912 311 P-SQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDP--VTSVVRFCFAK 368 (387)
T ss_pred C-CCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCC--CCCEEEEEEeC
Confidence 3 45678899998752 23556788888878999998765532211 14689999986
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-20 Score=220.17 Aligned_cols=316 Identities=14% Similarity=0.077 Sum_probs=215.0
Q ss_pred CceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----C-ceEecCCHHH
Q psy13354 28 NNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----A-ANVQPHSGSQ 100 (1342)
Q Consensus 28 ~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~-~vi~~~sGs~ 100 (1342)
..+.|..+++..+ +.+.+++...+.... ...|.. .+..++++++++++.+.+|.+ . .+++++|+++
T Consensus 45 ~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~------~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~ 117 (410)
T PRK06290 45 ELIDMGVGEPDEMADESVVEVLCEEAKKPE------NRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKP 117 (410)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhCCC------CCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHH
Confidence 3577887776543 337777665542111 112332 456789998888887776643 2 4666657778
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++..++.+++++||+|+++.+.++.+ ...+...|. ++++++.+ .++.+|++.+++.+.+ +++++++++|+||
T Consensus 118 al~~~~~~~~~~gd~Vlv~~P~y~~~---~~~~~~~g~--~v~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NP 191 (410)
T PRK06290 118 ALAMLPSCFINPGDVTLMTVPGYPVT---GTHTKYYGG--EVYNLPLLEENNFLPDLDSIPKDIKE-KAKLLYLNYPNNP 191 (410)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCccH---HHHHHHcCC--EEEEEecCCCcCCcCCHHHHHHhhcc-cceEEEEECCCCC
Confidence 99999999999999999877665544 334456676 45555554 3577899999988865 5677777766777
Q ss_pred -----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 -----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 -----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
+...+++|+++|++||++||+||+|....+.. ...+... ..+++++||||.+ |.+| ||+++++++
T Consensus 192 TG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~-~~~s~~~~~~~~~~~I~i~SfSK~~-g~~GlRiG~ii~~~~l 269 (410)
T PRK06290 192 TGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDG-KPLSFLSVPGAKEVGVEIHSLSKAY-NMTGWRLAFVVGNELI 269 (410)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCC-CCcChhcCCCccccEEEEeechhhc-CCchhheEeEEeCHHH
Confidence 22257899999999999999999998654422 2112111 2358899999999 6677 999999999
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC-
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK- 324 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~- 324 (1342)
++.+......+..+. ..+.+.++..++. .. .+.++.++++.++++++.+.|.+.|+.+.. +.+++++|+.+++..
T Consensus 270 ~~~l~~~~~~~~~~~-~~~~q~aa~~~l~-~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-p~g~f~l~v~lp~~~~ 345 (410)
T PRK06290 270 VKAFATVKDNNDSGQ-FIAIQKAGIYALD-HP-EITEKIREKYSRRLDKLVKILNEVGFKAEM-PGGTFYLYVKAPKGTK 345 (410)
T ss_pred HHHHHHHHhccccCC-cHHHHHHHHHHhh-Cc-HHHHHHHHHHHHHHHHHHHHHHhCCCeecC-CCeeeEEEEECCCccc
Confidence 888876544433332 2344444444433 22 367778889999999999999998887643 456788899987532
Q ss_pred ------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 325 ------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 325 ------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.+.+++..++++.+|.+.|+..+ .+++|++++..+...
T Consensus 346 ~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~--------~~~lRi~~~~~~~~~ 389 (410)
T PRK06290 346 SGIKFENAEEFSQYLIKEKLISTVPWDDA--------GHFLRFSVTFEAKDE 389 (410)
T ss_pred cCCCCCCHHHHHHHHHHhCCEEEECCccc--------cCeEEEEEEcccccc
Confidence 34577888888766665543211 257999998754433
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-20 Score=219.95 Aligned_cols=314 Identities=24% Similarity=0.252 Sum_probs=206.9
Q ss_pred eeeecCCCCcH----HHHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHH
Q psy13354 31 ELIASENYTSL----AVMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAV 105 (1342)
Q Consensus 31 ~l~a~~n~l~~----~v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~a 105 (1342)
.++++++|++. ++++++.+.+. .+..+..+.+++ +..+ ..+.+++.+++++|.++.++++ +|++++.++
T Consensus 4 ~~~~~~~~~~~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~----~~~~l~~~la~~~~~~~~iv~~-sg~~a~~~~ 77 (349)
T cd06454 4 LNFCSNDYLGLANHPEVIEAAKEALD-KYGVGAGGSRLISGTSD----LHEELEEELAEFHGKEAALVFS-SGYAANDGV 77 (349)
T ss_pred eecccCCccccCCCHHHHHHHHHHHH-HhCCCCCCcCeecCCch----HHHHHHHHHHHHhCCCCEEEec-cHHHHHHHH
Confidence 35777888754 49999999885 454333322222 2244 3444555899999988776666 899999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh----cCCeEEEEcCCCCC--c
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK----NKPKLIIAGASAYS--Q 179 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~----~~~~liv~~~s~~~--~ 179 (1342)
+.+++++||+|++....|+ +........|..+ ++++. +|++++++.+++ .+++++++++++++ .
T Consensus 78 ~~~~~~~gd~Vl~~~~~~~---~~~~~~~~~g~~~--~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~ 147 (349)
T cd06454 78 LSTLAGKGDLIISDSLNHA---SIIDGIRLSGAKK--RIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGD 147 (349)
T ss_pred HHHhcCCCCEEEEehhhhH---HHHHHHHHcCCce--EEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCC
Confidence 9999999999997665443 3444455666644 33332 478889988875 35677777554444 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-CC---CC-CCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-EY---PN-PVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~~---~~-~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~ 254 (1342)
..++++|+++|+++|+++|+|++|+.|.+... .. .. .....|++++|+||++ ++.||++++++++++.+.....
T Consensus 148 ~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~gG~i~~~~~~~~~~~~~~~ 226 (349)
T cd06454 148 IAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAF-GAVGGYIAGSKELIDYLRSYAR 226 (349)
T ss_pred ccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhh-cccCCEEECCHHHHHHHHHhch
Confidence 55899999999999999999999987655321 11 11 1123689999999999 6688999999888887766444
Q ss_pred CccccCCc-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 255 PGIQGGPL-MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 255 ~~~~~~~~-~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
++..+++. .+..+++..++. .... .+...+++.++++++.+.|.+.|+++... ....+.++..+....+.++...+
T Consensus 227 ~~~~~~~~~~~~~~a~~~~l~-~~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L 303 (349)
T cd06454 227 GFIFSTSLPPAVAAAALAALE-VLQG-GPERRERLQENVRYLRRGLKELGFPVGGS-PSHIIPPLIGDDPAKAVAFSDAL 303 (349)
T ss_pred hhhccCCCCHHHHHHHHHHHH-HHhc-CHHHHHHHHHHHHHHHHHHHhcCCcccCC-CCCcEEEEeCCChHHHHHHHHHH
Confidence 44433333 333444444443 3332 45678899999999999999988876542 23334444443222345666666
Q ss_pred HHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+++ ||.+.+..++.... ..+.+|++++..++
T Consensus 304 ~~~-gI~~~~~~~~~~~~---~~~~iRi~~~~~~~ 334 (349)
T cd06454 304 LER-GIYVQAIRYPTVPR---GTARLRISLSAAHT 334 (349)
T ss_pred HhC-CceEEEecCCccCC---CCCeEEEEEeCCCC
Confidence 665 99998754332211 13579999877555
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-20 Score=220.02 Aligned_cols=317 Identities=21% Similarity=0.246 Sum_probs=209.3
Q ss_pred CceeeeecCCCC----cHHHHHHHhHHHHhccccCCCCCCc-cCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASENYT----SLAVMEAQGTLLTNKYAEGYPGKRY-YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l----~~~v~eal~~~l~~~~~~g~~~~~~-~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
+.|.+..+ +++ +|.+++++.+.+. .+..++.+... ++.. .+...+++.++++++.+..++++ +|++++
T Consensus 17 ~~id~~~~-~~~g~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~----~~~~~l~~~la~~~~~~~~i~~~-~G~~~~ 89 (360)
T TIGR00858 17 RLLNFSSN-DYLGLASHPEVIQAAQQGAE-QYGAGSTASRLVSGNS----PLHEELEEELAEWKGTEAALLFS-SGYLAN 89 (360)
T ss_pred eEEecccC-CcccCCCCHHHHHHHHHHHH-hcCCCCCCcCcccCCc----HHHHHHHHHHHHHhCCCCEEEEC-chHHHH
Confidence 45767666 442 3569999888874 44433333222 1222 33444556888888877776766 888888
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc---CCeEEEEcCCCCC-
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN---KPKLIIAGASAYS- 178 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~---~~~liv~~~s~~~- 178 (1342)
..++.+++++||+|++..+.++ .........|..+.. ++. +|++.+++.++.. +++++++++.+++
T Consensus 90 ~~~l~~~~~~gd~v~~~~~~~~---~~~~~~~~~g~~~~~--~~~-----~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~ 159 (360)
T TIGR00858 90 VGVISALVGKGDLILSDALNHA---SLIDGCRLSGARVRR--YRH-----NDVEHLERLLEKNRGERRKLIVTDGVFSMD 159 (360)
T ss_pred HHHHHHhCCCCCEEEEEccccH---HHHHHHHhcCCceEE--ecC-----CCHHHHHHHHHHcccCCCeEEEEeCCccCC
Confidence 8888888999999997765444 444445556664333 332 4889999988763 3566666554443
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC--CC--CC--CCCcEEEecCCccCCCCCeeEEEEechhHHHHhh
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY--PN--PV--PFADFITSTTHKSLRGPRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~--~~--~l--~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~ 251 (1342)
...++++|.++|+++|++||+||+|+.|.+..... .. .+ ...+++++|+||+| |+.|||+++++++++.+..
T Consensus 160 G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~gG~~~~~~~~~~~~~~ 238 (360)
T TIGR00858 160 GDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKAL-GSYGAYVAGSQALIDYLIN 238 (360)
T ss_pred CCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhh-hccCcEEEcCHHHHHHHHH
Confidence 35699999999999999999999998765532100 00 01 13578999999999 7788999999988888765
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
....+..+++.++...++..+..+... ..+...+++.++++++.+.|.+.++.+. ++.++++|+.++....+.++..
T Consensus 239 ~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 315 (360)
T TIGR00858 239 RARTLIFSTALPPAVAAAALAALELIQ-EEPWRREKLLALIARLRAGLEALGFTLM--PSCTPIVPVIIGDNASALALAE 315 (360)
T ss_pred hCccceecCCCCHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHcCCccC--CCCCCEEEEEeCCHHHHHHHHH
Confidence 444443333223333333333333333 3355688999999999999999887754 3457788888764333446666
Q ss_pred HHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.++ ++||.+.+...+..+.+ .+++|++++..++.
T Consensus 316 ~l~-~~gI~v~~~~~~~~~~~---~~~iRis~~~~~~~ 349 (360)
T TIGR00858 316 ELQ-QQGIFVGAIRPPTVPAG---TSRLRLTLSAAHTP 349 (360)
T ss_pred HHH-HCCeeEeeeCCCCCCCC---CceEEEEEcCCCCH
Confidence 665 56999998655543322 35799999986663
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=223.49 Aligned_cols=319 Identities=16% Similarity=0.139 Sum_probs=215.3
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
...+++..+++.++ +.+.+++.+.+... ...|....+..++++++++++.+.+|.. +.+++++|+++|
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 105 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALDEG-------WTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEA 105 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHhcC-------CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHH
Confidence 45688887776554 34777766665321 1124445566789998888877766642 345555588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++.+||+|+++++.++.+ ...+...|. +++.++++ .++.+|++++++.+.+. ++++++++++||
T Consensus 106 l~~~~~~l~~~g~~Vlv~~p~y~~~---~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~~-~~~v~i~~p~NPt 179 (391)
T PRK08361 106 TYLAFESLLEEGDEVIIPDPAFVCY---VEDAKIAEA--KPIRIPLREENEFQPDPDELLELITKR-TRMIVINYPNNPT 179 (391)
T ss_pred HHHHHHHhcCCCCEEEEcCCCCccc---HHHHHHcCC--EEEEEecCCccCCCCCHHHHHHhcccc-cEEEEEeCCCCCC
Confidence 9999999999999999877555443 444556676 44444554 35689999999988764 455555555665
Q ss_pred -cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC---CCcEEEecCCccCCCCCe---eEEEEechhHHH
Q psy13354 179 -QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP---FADFITSTTHKSLRGPRG---GFILMKKKYKKI 248 (1342)
Q Consensus 179 -~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~---~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~ 248 (1342)
...+ +++|+++|++++++||+||+|....+......+... ..+++++|+||.+ |++| ||+++++++++.
T Consensus 180 G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~GlRiG~~~~~~~~~~~ 258 (391)
T PRK08361 180 GATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTF-AMTGWRLGFVIAPEQVIKD 258 (391)
T ss_pred CcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhc-CCcHhhhhhhccCHHHHHH
Confidence 2235 899999999999999999999765443222222111 2468899999999 6667 999999988887
Q ss_pred HhhccCCccccCCcHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC-CC
Q psy13354 249 INSAVFPGIQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK-KI 325 (1342)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~-~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~-~~ 325 (1342)
+..... +...+.+...+.++..++.+... .++++.++.+.++++.+.+.|++. |+.+. ++.+++++|+.++.. ..
T Consensus 259 ~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~p~g~~~~~~~l~~~~~~ 336 (391)
T PRK08361 259 MIKLHA-YIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVF-EPKGAFYVFANIDETGMS 336 (391)
T ss_pred HHHHHh-hhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeec-CCCEEEEEEEECCCCCCC
Confidence 765322 22223334444444444432111 246777888899999999999886 66653 345678899998753 34
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 337 ~~~l~~~l~~~~gv~v~pg~~f~~~~----~~~iRi~~~~ 372 (391)
T PRK08361 337 SEDFAEWLLEKARVVVIPGTAFGKAG----EGYIRISYAT 372 (391)
T ss_pred HHHHHHHHHHhCCEEEcCchhhCCCC----CCEEEEEecC
Confidence 56777777777899999876554322 3579999885
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-20 Score=223.76 Aligned_cols=320 Identities=13% Similarity=0.068 Sum_probs=216.9
Q ss_pred CceeeeecCC-----C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCH
Q psy13354 28 NNIELIASEN-----Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~n-----~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sG 98 (1342)
+.|.+..++. + .++.+.+++.+++..... ..|....+..++++++++++...+|.+ +.+++++|+
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~------~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~ 126 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKY------NSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGC 126 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcC------CCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCH
Confidence 5677777754 2 244588888877753211 124444556688887777776655543 445555589
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++|+..++.++++|||+|+++.+.++.+ .......|..+..+++..+.+|.+|++.+++++++++..+++.+++|++
T Consensus 127 ~~al~l~~~~l~~~Gd~Vlv~~P~y~~y---~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPt 203 (430)
T PLN00145 127 AQAIEIIMSVLAQPGANILLPRPGYPLY---EARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPC 203 (430)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCccH---HHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCC
Confidence 9999999999999999999877555443 3344566775555554434578899999999887765555655554433
Q ss_pred cc-c---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CCC--CcEEEecCCccCCCCCe---eEEEEe--chh
Q psy13354 179 QY-I---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VPF--ADFITSTTHKSLRGPRG---GFILMK--KKY 245 (1342)
Q Consensus 179 ~~-~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~~--~Divv~S~sK~l~gp~G---G~iv~~--~~l 245 (1342)
+. . .+++|+++|+++|++||+||+|....+....+.+. +.. .-++++|+||.| +.+| ||++++ +.+
T Consensus 204 G~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pG~RlG~iv~~~~~~~ 282 (430)
T PLN00145 204 GSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRW-VVPGWRLGWIATCDPNGI 282 (430)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEecccccc-CCCCeeEEEEEEecchhh
Confidence 22 2 48999999999999999999997655432222221 111 347889999998 6677 999974 333
Q ss_pred H------HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEE
Q psy13354 246 K------KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILV 318 (1342)
Q Consensus 246 ~------~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i 318 (1342)
+ +.+.... ....+++.+.+.++..++.....+++++.++.++++++.+.+.|.+. |+.....|.+++++|+
T Consensus 283 ~~~~~~~~~~~~~~--~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v 360 (430)
T PLN00145 283 LKETKVVDSIRNYL--NISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMV 360 (430)
T ss_pred hhhhHHHHHHHHHh--cccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEe
Confidence 2 2333322 22233445666666555543223477888899999999999999885 6654334678899999
Q ss_pred EccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 319 DLRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 319 ~~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.++.. .++.+++..+++++||.+.|+..++. .+++|++++.
T Consensus 361 ~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~------~~~lRis~~~ 406 (430)
T PLN00145 361 KLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGM------KNWLRITFAI 406 (430)
T ss_pred ccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCC------CCeEEEEeCC
Confidence 88632 23557888999888999998876653 3579999984
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-20 Score=221.74 Aligned_cols=318 Identities=22% Similarity=0.269 Sum_probs=206.8
Q ss_pred ceeeeecC--CC-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHH
Q psy13354 29 NIELIASE--NY-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAV 105 (1342)
Q Consensus 29 ~i~l~a~~--n~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~a 105 (1342)
.+++..+. ++ .++.+.+++.+.+.. +..+++..+...+ ..++.+++++++++++|.++.++++ +|++++..+
T Consensus 44 ~i~l~~~~~~~~~~~~~i~~a~~~~~~~-~~~~~~~~~~~~G---~~~l~~~l~~~la~~~g~~~~i~~t-sG~~a~~~~ 118 (397)
T PRK06939 44 VINFCANNYLGLANHPELIAAAKAALDS-HGFGMASVRFICG---TQDLHKELEEKLAKFLGTEDAILYS-SCFDANGGL 118 (397)
T ss_pred EEEeeccCccccCCCHHHHHHHHHHHHH-cCCCCcccccccC---CcHHHHHHHHHHHHHhCCCcEEEEc-ChHHHHHHH
Confidence 46555443 22 455688888887743 3223333222222 2366777778999999988777777 789999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---c--CCeEEEEcCCCC--C
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---N--KPKLIIAGASAY--S 178 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~--~~~liv~~~s~~--~ 178 (1342)
+.++++|||+|++.++.|+++ ...+...+. +++.++. .|++++++.+++ . +++++++....+ +
T Consensus 119 ~~~l~~~gd~vi~~~~~~~~~---~~~~~~~~~--~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G 188 (397)
T PRK06939 119 FETLLGKEDAIISDALNHASI---IDGVRLCKA--KRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDG 188 (397)
T ss_pred HHHhCCCCCEEEEEhhhhHHH---HHHHHhcCC--ceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCC
Confidence 999999999999877555443 333445555 3444443 388898888764 2 345555532222 2
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CC----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhcc
Q psy13354 179 QYIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GE----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAV 253 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~ 253 (1342)
...++++|.++|++||++||+|++|+.|.+.. +. ..+.....|++++|+||+++|+.|||+++++++++.+....
T Consensus 189 ~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~~~~~~l~~~~ 268 (397)
T PRK06939 189 DIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGRKEVIDWLRQRS 268 (397)
T ss_pred CcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeCHHHHHHHHHhC
Confidence 44689999999999999999999997664422 11 11112236899999999997777899999999988887654
Q ss_pred CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 254 FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 254 ~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
.++.++++..+..++++.+..+.+. ..++.++++.++++++.+.|.+.|+++.. +.+.++++.++....+.+++..+
T Consensus 269 ~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L 345 (397)
T PRK06939 269 RPYLFSNSLAPAIVAASIKVLELLE-ESDELRDRLWENARYFREGMTAAGFTLGP--GEHPIIPVMLGDAKLAQEFADRL 345 (397)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHcCCCcCC--CCCCEEEEEECCHHHHHHHHHHH
Confidence 4444444434443333333333333 23567788999999999999988876533 23344444444322345677777
Q ss_pred HHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+++ ||.+.+..++..+.+ ..++|++++..++
T Consensus 346 ~~~-gI~v~~~~~~~~~~~---~~~iRi~~~~~~~ 376 (397)
T PRK06939 346 LEE-GVYVIGFSFPVVPKG---QARIRTQMSAAHT 376 (397)
T ss_pred HHC-CceEeeeCCCCCCCC---CceEEEEECCCCC
Confidence 766 999987554432222 3579999887655
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-20 Score=221.39 Aligned_cols=320 Identities=11% Similarity=0.035 Sum_probs=215.5
Q ss_pred CceeeeecC-CC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHH
Q psy13354 28 NNIELIASE-NY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQ 100 (1342)
Q Consensus 28 ~~i~l~a~~-n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~ 100 (1342)
+.+.+..++ ++ .++.+.+++.+.+.... ...|+...+..++++++++++++++|.+ +.+++++|+++
T Consensus 40 ~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~ 113 (405)
T PRK06207 40 RPVDFSHGDVDAHEPTPGAFELFSAGVERGG------VQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQG 113 (405)
T ss_pred CceecCCcCCCCCCCCHHHHHHHHHHHhcCC------CccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHH
Confidence 446666544 42 33457787777664211 1124444556689999999999988853 34566658888
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC---CCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL---NKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~---~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
++..++.+++.|||+|++..+.|+. ....+...|..+..++++. ++++.+|++++++.+++. ++++++++|+|
T Consensus 114 al~~~~~~l~~~Gd~Vlv~~P~y~~---~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~-~k~v~l~~P~N 189 (405)
T PRK06207 114 ALFLAVAATVARGDKVAIVQPDYFA---NRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAG-VRVFLFSNPNN 189 (405)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCchh---HHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhc-CeEEEECCCCC
Confidence 9999999999999999987755544 3445566677444444321 235789999999988764 55566666666
Q ss_pred C-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--C---CCcEEEecCCccCCCCCe---eEEEEech
Q psy13354 178 S-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--P---FADFITSTTHKSLRGPRG---GFILMKKK 244 (1342)
Q Consensus 178 ~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~---~~Divv~S~sK~l~gp~G---G~iv~~~~ 244 (1342)
| + ..++++|+++|++||++||+||+|....+....+.... . ...++++||||.+ +.+| ||++++++
T Consensus 190 PTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~lpGlRiG~ii~~~~ 268 (405)
T PRK06207 190 PAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTE-SLSGYRLGVAFGSPA 268 (405)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhc-cCcccceEEEEcCHH
Confidence 6 2 22588999999999999999999986544332222111 1 1237899999999 6556 99999999
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
+++.+......+..+ ...+.+.++..++.+ ...++++..+++.++++.+.+.|++. ++.+. .+.+++++|++++..
T Consensus 269 l~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~p~gg~fl~~~l~~~ 345 (405)
T PRK06207 269 IIDRMEKLQAIVSLR-AAGYSQAVLRTWFSE-PDGWMKDRIARHQAIRDDLLRVLRGVEGVFVR-APQAGSYLFPRLPRL 345 (405)
T ss_pred HHHHHHHHHhHhccC-CCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-CCCeeEEEEEeCccc
Confidence 988887643333332 223444444444332 12246667778888888999999876 66653 356789999999753
Q ss_pred C-CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 324 K-ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 324 ~-~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
. .+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 346 ~~~~~~~~~~l~~~~gV~v~pG~~F~~~~----~~~~Ris~~~ 384 (405)
T PRK06207 346 AVSLHDFVKILRLQAGVIVTPGTEFSPHT----ADSIRLNFSQ 384 (405)
T ss_pred CCCHHHHHHHHHHhcCEEEeCchHhCCCC----CCeEEEEecC
Confidence 2 345677777777899999886654322 3579999986
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-20 Score=224.61 Aligned_cols=321 Identities=13% Similarity=0.083 Sum_probs=215.4
Q ss_pred CceeeeecCCC------CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCCH
Q psy13354 28 NNIELIASENY------TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~n~------l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~sG 98 (1342)
..|.+..++.. .++.+.+++.+.+.... ...|+...+..++++++++++...+|. + +.+++++|+
T Consensus 67 ~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~ 140 (462)
T PLN02187 67 TILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGK------GNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGC 140 (462)
T ss_pred CeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCC------CCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCH
Confidence 45777777532 22347888777764211 123455666778899788777765553 2 455556588
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++|+..++.++++|||+|+++.+.++.+ .......|..+..+++..++++.+|++++++++++.+..+++. +|+||
T Consensus 141 ~~al~~~~~~l~~pGd~Vlv~~P~y~~y---~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~-nP~NP 216 (462)
T PLN02187 141 NQGIEIVFESLARPNANILLPRPGFPHY---DARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVI-NPNNP 216 (462)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCccH---HHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEe-CCCCC
Confidence 9999999999999999999888666544 3345667775555554334568899999999887654445555 45555
Q ss_pred -c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC----CcEEEecCCccCCCCCe---eEEEEe-ch-
Q psy13354 179 -Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF----ADFITSTTHKSLRGPRG---GFILMK-KK- 244 (1342)
Q Consensus 179 -~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~----~Divv~S~sK~l~gp~G---G~iv~~-~~- 244 (1342)
+ ...+++|+++|++||++||+||+|....+....+.+.... .-++++||||.| +.+| ||++++ ++
T Consensus 217 TG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f-~~pGlRiG~~v~~~p~~ 295 (462)
T PLN02187 217 CGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGW-VVPGWKIGWIALNDPEG 295 (462)
T ss_pred CCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhc-CCccceeEEEEecCchh
Confidence 2 2258999999999999999999998655433222111111 247789999999 6777 999984 32
Q ss_pred ---hHHHHhhccCCcccc-CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEE-eeCCCCCeEEEEE
Q psy13354 245 ---YKKIINSAVFPGIQG-GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI-VSGGTKSHIILVD 319 (1342)
Q Consensus 245 ---l~~~l~~~~~~~~~~-~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~-~~~~~~~~~v~i~ 319 (1342)
+++.+......+..+ +++...+.++..++.+....++++.++.+.++++++.+.|++.+... ...|.+++++|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~ 375 (462)
T PLN02187 296 VFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTK 375 (462)
T ss_pred HHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEee
Confidence 233444433333332 33456666666555432234788888999999999999999875322 2245677899987
Q ss_pred ccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 320 LRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 320 ~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++.. ..+.+++..++.++||.+.|+..++. .+++|++++.
T Consensus 376 l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~------~~~iRis~~~ 420 (462)
T PLN02187 376 LELSLMDNIKDDIDFCVKLAREENLVFLPGDALGL------KNWMRITIGV 420 (462)
T ss_pred cChhhCCCCCCHHHHHHHHHhhCCEEEECccccCC------CCeEEEEeCC
Confidence 7531 12447778888888999998766642 3579999975
|
|
| >KOG0990|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-21 Score=206.06 Aligned_cols=270 Identities=19% Similarity=0.216 Sum_probs=223.4
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|..||+|..+.++++|+.++..+.+....+++|| .|||||||+|||+...+.++.+.|..
T Consensus 28 ~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh-~L~YgPPGtGktsti~a~a~~ly~~~---------------- 90 (360)
T KOG0990|consen 28 PQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPH-LLFYGPPGTGKTSTILANARDFYSPH---------------- 90 (360)
T ss_pred CCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCc-ccccCCCCCCCCCchhhhhhhhcCCC----------------
Confidence 4579999999999999999999999999999999997 79999999999999999999998631
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcC----c--cCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAP----I--NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIK 531 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p----~--~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~v 531 (1342)
+...-+.++++++.++++.+++-+....... | ....|+||+||+|.++.+++|+|.+..+....+++
T Consensus 91 -------~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~r 163 (360)
T KOG0990|consen 91 -------PTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTR 163 (360)
T ss_pred -------CchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceE
Confidence 1112356778888888776655444332221 2 23689999999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC--
Q psy13354 532 FILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS-- 609 (1342)
Q Consensus 532 lIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~-- 609 (1342)
|++.++.+.++.+++++||..++|.+++..+....+..+++.+.+.++++....+++.+.||+|.+++.|+-...+..
T Consensus 164 F~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~ 243 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMER 243 (360)
T ss_pred EEEeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998766643
Q ss_pred --CCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHH
Q psy13354 610 --EKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YNLSYSIVLKDLSLLLHQ 671 (1342)
Q Consensus 610 --~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~-~~~~~~~il~~L~~~~r~ 671 (1342)
..++.+.|..+.+.....++.++++.++.+....+..-+..+.. .|.+-..++..+..++..
T Consensus 244 ~e~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~ 308 (360)
T KOG0990|consen 244 KELNNPNDLVYQCKGAPQPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAI 308 (360)
T ss_pred CCCCCchhhHHHhcCCCChhHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 23778889999999988999999999999888666555555443 233444455555444433
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=218.65 Aligned_cols=321 Identities=15% Similarity=0.134 Sum_probs=215.5
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---C-ceEecCCHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---A-ANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~-~vi~~~sGs~ 100 (1342)
.+.+.+..+... .++.+.+++...+... ....|+...+..++++++++++.+.+|.+ + .+++++|+++
T Consensus 33 ~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~ 106 (403)
T PRK08636 33 EDIIDFSMGNPDGPTPQHIIDKLCESAQKP------KTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKE 106 (403)
T ss_pred CCEEEcCCcCCCCCCCHHHHHHHHHHhcCC------ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHH
Confidence 345777665433 3444666665554211 11234555667789998888888877743 3 4666658888
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHH----HHHHHh--cCCeEEEEcC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKV----EYLAKK--NKPKLIIAGA 174 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~L----e~~i~~--~~~~liv~~~ 174 (1342)
|+..++.+++.|||.|++.++.++.+ ...+...|..+..++++.++++.+|++.+ +++++. .+.+++++++
T Consensus 107 al~~~~~~l~~~gd~Vlv~~P~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~ 183 (403)
T PRK08636 107 GYVHLVQAITNPGDVAIVPDPAYPIH---SQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNF 183 (403)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcch---HHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeC
Confidence 99999999999999999877555544 44456677754555444345578898754 555553 3456777776
Q ss_pred CCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CCC---CcEEEecCCccCCCCCe---eEEEE
Q psy13354 175 SAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VPF---ADFITSTTHKSLRGPRG---GFILM 241 (1342)
Q Consensus 175 s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~~---~Divv~S~sK~l~gp~G---G~iv~ 241 (1342)
|+|| +...+++|+++|++|+++||+||+|....+.....++. ++. ..++++||||.+ |.+| ||+++
T Consensus 184 P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~iv~ 262 (403)
T PRK08636 184 PHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSY-NMAGWRVGFVVG 262 (403)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEeccccc-CCccceeeeeeC
Confidence 6666 33368999999999999999999998654432122211 111 235578999999 6566 99999
Q ss_pred echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEcc
Q psy13354 242 KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLR 321 (1342)
Q Consensus 242 ~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~ 321 (1342)
++++++.+.........+ +..+.+.++..++.. ...++++.++.+.++++.+.+.|.+.|+.+. .+.+++++|++++
T Consensus 263 ~~~li~~~~~~~~~~~~~-~~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~p~~g~~~~~~l~ 339 (403)
T PRK08636 263 NKKLVGALKKIKSWLDYG-MFTPIQVAATIALDG-DQSCVEEIRETYRKRRDVLIESFANAGWELQ-KPRASMFVWAKIP 339 (403)
T ss_pred CHHHHHHHHHHHHHhccc-CChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CCCcceEEEEECC
Confidence 999888876643222222 224455544444322 2346777888899999999999999887653 3567899999997
Q ss_pred CCC---CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 322 NKK---ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 322 ~~~---~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+.. .+.+++..+++++||.+.|+..++... .+++|++++
T Consensus 340 ~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~----~~~iRi~~~ 381 (403)
T PRK08636 340 EPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYG----DEYVRIALI 381 (403)
T ss_pred CccCCCCHHHHHHHHHHhCCEEEecchhhCcCC----CCeEEEEec
Confidence 532 245777788888899999876654332 357999986
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-20 Score=221.69 Aligned_cols=315 Identities=12% Similarity=0.110 Sum_probs=226.6
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al 106 (1342)
.+.+.+++..+++.|++++...+.. + ......++.+++++.+++++|.+ +.++++++|+.++..++
T Consensus 10 ~~l~~pGP~~~~~~V~~a~~~~~~~-----~-------~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~ 77 (401)
T PLN02409 10 NHLFVPGPVNIPERVLRAMNRPNED-----H-------RSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESAL 77 (401)
T ss_pred ceeccCCCCCCCHHHHHHhcCCCCC-----C-------CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence 3457788889999999997654321 1 12345677888999999999986 46777779999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---cCCeEEEEcC-CCCC-ccc
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---NKPKLIIAGA-SAYS-QYI 181 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~~~~liv~~~-s~~~-~~~ 181 (1342)
..++++||+|++....+.+.. ....++..|..+..+ +.+.++.+|++++++.+++ .++++++++. .+.+ ...
T Consensus 78 ~~~~~~Gd~Vlv~~~~~~~~~-~~~~~~~~g~~v~~v--~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~ 154 (401)
T PLN02409 78 TNTLSPGDKVVSFRIGQFSLL-WIDQMQRLNFDVDVV--ESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTN 154 (401)
T ss_pred HhcCCCCCEEEEeCCCchhHH-HHHHHHHcCCceEEE--ECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccC
Confidence 999999999998774443221 234456667755555 4444445799999999986 2456555544 3333 555
Q ss_pred CHHHHHHH--HHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC-C-
Q psy13354 182 DFERFYHI--AKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF-P- 255 (1342)
Q Consensus 182 ~l~~I~~l--a~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~-~- 255 (1342)
|+++|.++ |+++|+++++|++|+.|... ..... .+|++++|.||||++|.| |+++.+++.++.+..... +
T Consensus 155 ~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~----id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~ 230 (401)
T PLN02409 155 DLAGVRKLLDCAQHPALLLVDGVSSIGALD----FRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRV 230 (401)
T ss_pred CHHHHHHHHhhhccCcEEEEEcccccCCcc----ccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCe
Confidence 99999999 99999999999999876541 11111 369999999999988888 999999988777654211 0
Q ss_pred ---------------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC--C-eEEE
Q psy13354 256 ---------------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK--S-HIIL 317 (1342)
Q Consensus 256 ---------------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~--~-~~v~ 317 (1342)
+..++++.+...++..++......+++.+.+++.++++++.+.|.+.|++++.+... . .+++
T Consensus 231 ~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~ 310 (401)
T PLN02409 231 FFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTA 310 (401)
T ss_pred ecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEE
Confidence 002356666777777777776666788999999999999999999999987653211 2 3456
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+++.....++...+++++||.+.++..+.. ...+|+|...+++
T Consensus 311 ~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~------~~~~Rig~~g~~~ 355 (401)
T PLN02409 311 VVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVA------GKVFRIGHLGNVN 355 (401)
T ss_pred EeCCCCCCHHHHHHHHHHhCCEEEEcCCCccc------CCEEEEcCCCCCC
Confidence 76665444456777888889999997654322 2469999998765
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.2e-20 Score=220.62 Aligned_cols=325 Identities=17% Similarity=0.173 Sum_probs=218.9
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc--
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al-- 109 (1342)
++..+.|+.+++++.+.+...+ +.+.+..+.......+..+.+++.+++++|.+ +.+++++|+|+++..++.++
T Consensus 23 a~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~ 100 (398)
T TIGR03392 23 AATALKPQAVIDATQQFYRLSS--GTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYAR 100 (398)
T ss_pred ccccCCCHHHHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhh
Confidence 4456788889999888775332 23322222222333455566888999999984 56777779999999999887
Q ss_pred --cCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 110 --LNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 110 --~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
+++||+|++++..|++....+ ......|. +++.++.+.++.+|+++++++++++ +++++++.++++ ...|++
T Consensus 101 ~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~--~v~~v~~~~~~~~~~~~l~~~i~~~-t~lv~i~~~~n~tG~~~~~~ 177 (398)
T TIGR03392 101 PRLQPGDEIIVSEAEHHANLIPWLMVAQQTGA--KVVKLPIGADLLPDIRQLPELLTPR-TRILALGQMSNVTGGCPDLA 177 (398)
T ss_pred ccCCCCCEEEECCcchhHHHHHHHHHHHHcCc--EEEEEecCCCCCcCHHHHHHHhccC-ceEEEEECccccccccCCHH
Confidence 579999998887766543333 33456677 4455566666788999999998764 556555554444 445999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc----------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV---------- 253 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~---------- 253 (1342)
+|+++|+++|+++++|++|+.|...... .. -.+|++++|+||.+ ||.| |++++++++++.+....
T Consensus 178 ~i~~~~~~~~~~~ivD~a~~~~~~~~~~--~~-~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 253 (398)
T TIGR03392 178 RAITLAHQYGAVVVVDGAQGVVHGPPDV--QA-LDIDFYAFSGHKLY-GPTGIGVLYGKTELLEAMPPWQGGGKMLSHVS 253 (398)
T ss_pred HHHHHHHHcCCEEEEEhhhhcCCCCCCh--hh-cCCCEEEEeccccc-CCCceEEEEEcHHHHhhCCCeecCCceEeecc
Confidence 9999999999999999999876542110 00 13699999999977 8888 99999998877664321
Q ss_pred ----------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccC
Q psy13354 254 ----------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 254 ----------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~ 322 (1342)
..+-.|+++.+...++..++....+.+++.+.++..+.++++.+.|.+. |+.+... ...+++++.+++
T Consensus 254 ~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~-~~~~i~~~~~~~ 332 (398)
T TIGR03392 254 FDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRC-PGSSLLAFDFAG 332 (398)
T ss_pred ccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCCcEEEEEeCC
Confidence 1112356666677777777665544466777888899999999999885 7776542 345677776653
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCC-Ccc-cccccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPE-KPY-FTSGIRLGSSAITTRG 370 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~-~~~~lRi~~~~~~t~~ 370 (1342)
. .+.++. ..|+++||.+.++.....+- ..+ ..+.+|+|++.++|.+
T Consensus 333 ~-~~~~l~-~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ 380 (398)
T TIGR03392 333 V-HHSDLA-ALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQ 380 (398)
T ss_pred c-CHHHHH-HHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHH
Confidence 2 233444 44566799998654221100 000 0357999999987753
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-20 Score=221.09 Aligned_cols=337 Identities=11% Similarity=0.034 Sum_probs=223.1
Q ss_pred cccccchHHHHHHHHHHHh-----ccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHH
Q psy13354 7 NLSKIDPKIWEIILKEKQR-----QNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAI 79 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-----~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~ 79 (1342)
.+..+.+.....+...... .++.+.+..+++.. ++.+.+++.+.+.. . ..|+...+..+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-~-------~~Y~~~~G~~~lr~~ia 75 (396)
T PRK09147 4 RLDRLQPYPFEKLRALFAGVTPPADLPPISLSIGEPKHPTPAFIKDALAANLDG-L-------ASYPTTAGLPALREAIA 75 (396)
T ss_pred hhhcCCcchHHHHHHHHHhhhhccCCCeEecCCCCCCCCCCHHHHHHHHHHhhh-h-------cCCCCCCCCHHHHHHHH
Confidence 3444444444444443322 24668888777544 33477776665421 1 12444445568889888
Q ss_pred HHHHHHhCCC----C-ceEecCCHHHHHHHHHHHccCC---CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--C
Q psy13354 80 NRLKKIFNAE----A-ANVQPHSGSQANQAVFFSVLNP---GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--K 149 (1342)
Q Consensus 80 ~~la~~~g~~----~-~vi~~~sGs~A~~~al~al~~p---GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~ 149 (1342)
+++.+.+|.+ + .+++++|+++|+..++.++++| ||.|+++.+.++.+ .......|. ++++++.+ +
T Consensus 76 ~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~---~~~~~~~g~--~~~~vp~~~~~ 150 (396)
T PRK09147 76 AWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIY---EGAALLAGA--EPYFLNCDPAN 150 (396)
T ss_pred HHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccch---HHHHHhcCC--EEEEeccCccc
Confidence 8888777743 3 5666658888999999999999 89999776555433 344456676 45555554 4
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-CCCCCC------
Q psy13354 150 KEKIDYKKVEYLAKKNKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-EYPNPV------ 217 (1342)
Q Consensus 150 ~~~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~~~~~l------ 217 (1342)
+|.+|++.+++.+.+ +++++++++++|| +...+++|+++|++|+++||+||+|....+... .....+
T Consensus 151 ~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 229 (396)
T PRK09147 151 NFAPDFDAVPAEVWA-RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAEL 229 (396)
T ss_pred cCccCHHHHHHHHhh-ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhcccc
Confidence 578999999887765 5677777777777 333789999999999999999999986544321 111111
Q ss_pred --C--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHH
Q psy13354 218 --P--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVK 290 (1342)
Q Consensus 218 --~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~ 290 (1342)
+ ...++++||||.+ +.+| ||+++++++++.+......... +.....+.++..++. ...++++.++.+.+
T Consensus 230 ~~~~~~~vi~~~S~SK~~-~~~GlRiG~~~~~~~l~~~~~~~~~~~~~-~~~~~~q~a~~~~~~--~~~~~~~~~~~~~~ 305 (396)
T PRK09147 230 GRDDFKRLVVFHSLSKRS-NVPGLRSGFVAGDAALLKKFLLYRTYHGC-AMPPAVQAASIAAWN--DEAHVRENRALYRE 305 (396)
T ss_pred CccccccEEEEecccccc-CCccceeeeecCCHHHHHHHHHHhhhccc-CCCHHHHHHHHHHhc--chhHHHHHHHHHHH
Confidence 0 1238889999988 6666 9999999988887653322222 233344444444432 22367777888999
Q ss_pred HHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCC--CCccccccccccccc
Q psy13354 291 NAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDP--EKPYFTSGIRLGSSA 365 (1342)
Q Consensus 291 ~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~--~~~~~~~~lRi~~~~ 365 (1342)
+++.+.+.|.+. +.+. .+.+++++|++++ ..+.+++..+++++||.+.++..++.. ......+++|++++.
T Consensus 306 ~~~~~~~~L~~~-~~~~-~p~~g~f~~~~~~--~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~ 378 (396)
T PRK09147 306 KFDAVTPILAPV-LDVQ-LPDAGFYLWAKVP--GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA 378 (396)
T ss_pred HHHHHHHHHHHh-cCCC-CCCeeEEEEEECC--CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC
Confidence 999999998874 4432 3567899999987 235677888888889999988765432 111124679999885
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=218.09 Aligned_cols=335 Identities=13% Similarity=0.098 Sum_probs=220.0
Q ss_pred cccchHHHHHHHHHHHhccCceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh
Q psy13354 9 SKIDPKIWEIILKEKQRQNNNIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF 86 (1342)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~ 86 (1342)
+.........+..........+.+..+++.+++ .+++++....... ...|+...+..++++++++++...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~-------~~~Y~~~~G~~~lr~~ia~~~~~~~ 83 (384)
T PRK06348 11 QQMEVNIMAEIATLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKG-------HTRYTDSGGDVELIEEIIKYYSKNY 83 (384)
T ss_pred hcCCccHHHHHHHHHHhcCCcEEcCCCCCCCCCCHHHHHHHHHHHhcC-------CCCCCCCCCcHHHHHHHHHHHHHHh
Confidence 333444444443333333455777777655433 3555544443211 1234555566788898888887665
Q ss_pred CCC---CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC--CCCCCCCHHHHHHH
Q psy13354 87 NAE---AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL--NKKEKIDYKKVEYL 161 (1342)
Q Consensus 87 g~~---~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~--~~~~~id~e~Le~~ 161 (1342)
|.. +.+++++|+++|+..++.++++|||+|++..+.++.+ ...+...|. .+++++. ++++.+|++++++.
T Consensus 84 ~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~---~~~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~ 158 (384)
T PRK06348 84 DLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPY---KDQIEMVGG--KPIILETYEEDGFQINVKKLEAL 158 (384)
T ss_pred CCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcch---HHHHHHcCC--EEEEecCCcCcCCcCCHHHHHHh
Confidence 543 4455565888999999999999999999877555544 344455566 4455554 34567999999998
Q ss_pred HHhcCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC---CCcEEEecCCccC
Q psy13354 162 AKKNKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP---FADFITSTTHKSL 231 (1342)
Q Consensus 162 i~~~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~---~~Divv~S~sK~l 231 (1342)
+++ +++++++++++|| +...+++|+++|++||++||+||+|....+.. .+.+. +. ...++++||||.+
T Consensus 159 ~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~ 236 (384)
T PRK06348 159 ITS-KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAGMPERTITFGSFSKDF 236 (384)
T ss_pred hCc-CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC-CccchhhcCCCcCcEEEEecchhcc
Confidence 865 4556666566666 22268999999999999999999998654432 21111 11 1357889999999
Q ss_pred CCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEe
Q psy13354 232 RGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIV 307 (1342)
Q Consensus 232 ~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~ 307 (1342)
|.+| ||+++++++++.+........++ ++...+.++..++. ....+.+..++.+.++++++.+.|.+. ++.+.
T Consensus 237 -~l~GlRiG~~v~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~ 313 (384)
T PRK06348 237 -AMTGWRIGYVIAPDYIIETAKIINEGICFS-APTISQRAAIYALK-HRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLH 313 (384)
T ss_pred -CCccccceeeecCHHHHHHHHHHHHhccCC-CCHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence 6556 99999998888877643333333 23445555544443 333356677888889999999999875 55543
Q ss_pred eCCCCCeEEEEEccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.+++++|+.++.. ..+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 314 -~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~----~~~iRi~~~~ 367 (384)
T PRK06348 314 -PPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESG----EGYIRLACTV 367 (384)
T ss_pred -cCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccCC----CCeEEEEecC
Confidence 355678899998753 3456777778888899999876664322 3679999863
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=218.32 Aligned_cols=342 Identities=11% Similarity=0.082 Sum_probs=224.4
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
.+.+..+.....+...... ...+.|..+... .++.+.+++.+.+... ...|....+..++++++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~-------~~~Y~~~~g~~~lr~~ia~~~~~ 76 (387)
T PRK07777 5 RLRPFGTTIFAEMSALAVR-TGAVNLGQGFPDEDGPPEMLEAAQEAIAGG-------VNQYPPGPGIPELRAAIAAQRRR 76 (387)
T ss_pred hhhhcCccHHHHHHHHHhh-CCeEEccCCCCCCCCCHHHHHHHHHHHhcC-------CCCCCCCCCCHHHHHHHHHHHHH
Confidence 4444444444444333332 355777766522 2344666655555321 12345556667899988888887
Q ss_pred HhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHH
Q psy13354 85 IFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVE 159 (1342)
Q Consensus 85 ~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le 159 (1342)
.+|.+ +.+++++||++|+..++.+++.+||+|++..+.++. ....+...|..+..+++..+ .++.+|+++++
T Consensus 77 ~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~ 153 (387)
T PRK07777 77 RYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDS---YAAVIAMAGAHRVPVPLVPDGRGFALDLDALR 153 (387)
T ss_pred HhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchh---hHHHHHHCCCEEEEeecCCccCCCcCCHHHHH
Confidence 77764 246666688999999999999999999987755543 34445566764444433222 24679999999
Q ss_pred HHHHhcCCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-----CCCcEEEecCCc
Q psy13354 160 YLAKKNKPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-----PFADFITSTTHK 229 (1342)
Q Consensus 160 ~~i~~~~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-----~~~Divv~S~sK 229 (1342)
+.+.+ +++++++++++|| + ..++++|+++|++|+++||+|++|....+....+.+.. ...+++++|+||
T Consensus 154 ~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 232 (387)
T PRK07777 154 AAVTP-RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAK 232 (387)
T ss_pred HhcCc-ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechh
Confidence 98865 4567677666666 2 23699999999999999999999975544222111111 124688999999
Q ss_pred cCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEE
Q psy13354 230 SLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306 (1342)
Q Consensus 230 ~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~ 306 (1342)
.| |.+| ||+++++++++.+........++ ...+.+.++..++.. ...+.+..++.+.++++++.+.|.+.|+++
T Consensus 233 ~~-g~~GlRiG~~~~~~~l~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 309 (387)
T PRK07777 233 TF-NVTGWKIGWACGPAPLIAAVRAAKQYLTYV-GGAPFQPAVAHALDH-EDAWVAALRDSLQAKRDRLAAGLAEAGFEV 309 (387)
T ss_pred hc-cCcCceeEEEecCHHHHHHHHHHHhhcccC-CCCHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99 6556 99999998888877543322222 223444444444432 234677788899999999999999988776
Q ss_pred eeCCCCCeEEEEEccC--CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 307 VSGGTKSHIILVDLRN--KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~--~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.. +.+++++|+.++. ...+.+++..+++++||.+.|+..++.... ...+++|++++.
T Consensus 310 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~-~~~~~~Ri~~~~ 368 (387)
T PRK07777 310 HD-SAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPAD-AWNHLVRFAFCK 368 (387)
T ss_pred cC-CCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCc-CCCCeEEEEecC
Confidence 43 4567889988753 224567888888888999998765542211 114579999875
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=218.62 Aligned_cols=318 Identities=12% Similarity=0.067 Sum_probs=214.3
Q ss_pred CceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHH
Q psy13354 28 NNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~ 102 (1342)
..+.+..+++..+ +.+.+++.+.+.+. ....|+...+..++++++++++.+..|.. +.+++++|+++|+
T Consensus 30 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 103 (386)
T PRK07550 30 PLIDLSQAVPGYPPPPELLRALAEAAADP------AAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAF 103 (386)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhCc------CCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence 4577877775443 33777766655311 11224445567799998888888877743 4556665778899
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
..++.+++++||+|++..+.++.+ ...+...|. ++++++.+ .++.+|++++++.+++..+.+++++ ++|| +
T Consensus 104 ~~~~~~l~~~gd~Vlv~~p~y~~~---~~~~~~~g~--~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~-P~NPtG 177 (386)
T PRK07550 104 WAAMVTLAGAGDEVILPLPWYFNH---KMWLDMLGI--RPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVT-PNNPTG 177 (386)
T ss_pred HHHHHHhcCCCCEEEEcCCCCcch---HHHHHhcCC--EEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeC-CCCCCC
Confidence 999999999999999777555433 444566677 44554554 4567899999999876544555554 4455 2
Q ss_pred c----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechhHH
Q psy13354 180 Y----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKYKK 247 (1342)
Q Consensus 180 ~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l~~ 247 (1342)
. .++++|+++|++||++||+|++|+............+. ...++++||||.+ |..| ||+++++++++
T Consensus 178 ~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~i~~~~~~~~ 256 (386)
T PRK07550 178 VVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSY-ALTGHRVGAVVASPARIA 256 (386)
T ss_pred cccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhc-cCcccceEeeecCHHHHH
Confidence 2 25899999999999999999998754332221111211 1246789999999 5444 99999998888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccC-CCC
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRN-KKI 325 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~-~~~ 325 (1342)
.+.........+ ++...+.++..++.. ..++.++.++.+.++++++.+.|.+. ++.+ .+.+++++|+.++. ...
T Consensus 257 ~~~~~~~~~~~~-~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~g~~~~~~~~~~~~~~ 332 (386)
T PRK07550 257 EIEKFMDTVAIC-APRIGQIAVAWGLPN-LADWRAGNRAEIARRRDAFRAVFARLPGWEL--LASGAYFAYVRHPFPDRP 332 (386)
T ss_pred HHHHHHhhcccC-CCcHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHhCCCcee--CCCceEEEEecCCCCCCC
Confidence 777644333332 334444544444433 33466677888999999999999885 6654 34567899999875 344
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+.+++..+++++||.+.++..++... ..++|++++..
T Consensus 333 ~~~l~~~l~~~~gv~v~pg~~f~~~~----~~~iRis~~~~ 369 (386)
T PRK07550 333 SREVARRLAKEAGILCLPGTMFGPGQ----EGYLRLAFANA 369 (386)
T ss_pred HHHHHHHHHHhcCEEEeCchhhCCCC----CCEEEEEeecC
Confidence 56778888888899999876664321 35799999753
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=218.01 Aligned_cols=344 Identities=15% Similarity=0.135 Sum_probs=225.8
Q ss_pred CccccccccccchHHHHHHHHHHHh----ccCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHH
Q psy13354 1 MIIKNENLSKIDPKIWEIILKEKQR----QNNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLI 74 (1342)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~L 74 (1342)
||-.++++..+++.....+...... ....+.+..+++.++ +.+.+++.+.+.+.. ..|+...+...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~l 73 (393)
T PRK05764 1 MMKLSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDGK-------TKYTPAAGIPEL 73 (393)
T ss_pred CcchhhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCC-------CCcCCCCChHHH
Confidence 4334556666555444333322221 245577777765544 457777766664211 124445566788
Q ss_pred HHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCC
Q psy13354 75 EKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKE 151 (1342)
Q Consensus 75 e~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~ 151 (1342)
++.+++++...+|.. +.+++++|+++|+..++.+++.+||.|+++.+.+++ ....+...|..+..++...++++
T Consensus 74 r~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~---~~~~~~~~g~~~~~~~~~~~~~~ 150 (393)
T PRK05764 74 REAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVS---YPEMVKLAGGVPVFVPTGEENGF 150 (393)
T ss_pred HHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcc---hHHHHHHcCCEEEEEecCcccCC
Confidence 887888877666642 345556588899999999999999999987755544 34445666774444433323457
Q ss_pred CCCHHHHHHHHHhcCCeEEEEcCCCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C--C--CC
Q psy13354 152 KIDYKKVEYLAKKNKPKLIIAGASAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V--P--FA 220 (1342)
Q Consensus 152 ~id~e~Le~~i~~~~~~liv~~~s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l--~--~~ 220 (1342)
.+|++.+++.+.+ ..+++++++++|| +. .++++|+++|++||+++|+|++|+...+......+. + + ..
T Consensus 151 ~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 229 (393)
T PRK05764 151 KLTVEQLEAAITP-KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDR 229 (393)
T ss_pred cCCHHHHHHhhCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCC
Confidence 8899999998865 4455555565655 22 368999999999999999999987554322111111 1 1 24
Q ss_pred cEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q psy13354 221 DFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297 (1342)
Q Consensus 221 Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~ 297 (1342)
+++++|+||++ |+.| ||+++++++++.+......+.. +++...+.++...+.. ...++++.++++.++++.+.+
T Consensus 230 ~i~~~s~SK~~-~~~G~RiG~i~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~ 306 (393)
T PRK05764 230 TITVNGFSKAY-AMTGWRLGYAAGPKELIKAMSKLQSHSTS-NPTSIAQYAAVAALNG-PQDEVEEMRQAFEERRDLMVD 306 (393)
T ss_pred EEEEecCcccc-cCccceeEEEecCHHHHHHHHHHHhhccc-CCChHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHH
Confidence 68899999999 6566 9999999988888764333222 2333444444434331 234667778888999999999
Q ss_pred HHHhC-CcEEeeCCCCCeEEEEEccCCCC-----CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 298 ILDQR-GIRIVSGGTKSHIILVDLRNKKI-----TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 298 ~L~~~-g~~~~~~~~~~~~v~i~~~~~~~-----~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.|++. |+.+.. +.+++++|+.++.... +.++...+++++||.+.++..++. .+++|++++.
T Consensus 307 ~L~~~~g~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~vRis~~~ 373 (393)
T PRK05764 307 GLNEIPGLECPK-PEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGA------PGYVRLSYAT 373 (393)
T ss_pred HHhhCCCCcccC-CCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCC------CCEEEEEecC
Confidence 99987 877643 5667888988875432 257778888888999987655533 3579999864
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-20 Score=208.01 Aligned_cols=324 Identities=16% Similarity=0.154 Sum_probs=235.4
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc--c
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV--L 110 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al--~ 110 (1342)
+...++.|.++++|...+...| |+|++-+ ..+.....+.+.+++.+++++|++ ..++|+.+||++++.++... .
T Consensus 8 ~ATTp~~~~v~~~m~~~~~~~f--gNPsS~H-~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a 84 (386)
T COG1104 8 AATTPVDPEVLEAMLPYLTEVF--GNPSSLH-SFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALA 84 (386)
T ss_pred cccCCCCHHHHHHHHHHHHhhc--CCccchh-HhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHh
Confidence 3466888889999999997654 7777743 334445566666999999999998 57778879999999998873 2
Q ss_pred ----CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHH
Q psy13354 111 ----NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFER 185 (1342)
Q Consensus 111 ----~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~ 185 (1342)
..|.+|+++..+|++....+..++..|. ++.+++++.+|.+|+++|++++++++.-+-++..+|.. ...|+++
T Consensus 85 ~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~--~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~e 162 (386)
T COG1104 85 YRNAQKGKHIITSAIEHPAVLNTCRYLERQGF--EVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAE 162 (386)
T ss_pred hhcccCCCeEEEcccccHHHHHHHHHHHhcCC--eEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHH
Confidence 2578999999999888777777766677 55555778899999999999999877666555555544 6669999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHH--Hhhc--cCCcccc
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKI--INSA--VFPGIQG 259 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~--l~~~--~~~~~~~ 259 (1342)
|.++|+++|+++++|.+|++|.+.-+ ... .+|++++|.||.. ||.| |+++.++...-. +.-. -...-.|
T Consensus 163 i~~i~k~~~i~fHvDAvQa~Gkipi~----~~~~~vD~ls~SaHK~~-GpkGiGaLyv~~~~~~~p~i~GGgQE~g~RsG 237 (386)
T COG1104 163 IGEICKERGILFHVDAVQAVGKIPID----LEELGVDLLSFSAHKFG-GPKGIGALYVRPGVRLEPLIHGGGQERGLRSG 237 (386)
T ss_pred HHHHHHHcCCeEEEehhhhcCceecc----ccccCcceEEeehhhcc-CCCceEEEEECCCCccCceeccCcCCCCCCCC
Confidence 99999999999999999999877211 111 2799999999999 9999 999987743211 1110 0122346
Q ss_pred CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCC--CCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 260 GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGG--TKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 260 ~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~--~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
+.+.+..++++.|+..... .++....++...+++|.+.|.+. ++.+...+ .-.+.+.+.++. ...+.+...|+
T Consensus 238 Tenv~~Ivg~~~A~~~a~~-~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~g--v~gE~ll~~L~ 314 (386)
T COG1104 238 TENVPGIVGFGKAAEIAVE-ELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPG--VEGESLLLALD 314 (386)
T ss_pred CccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCC--CcHHHHHHhcc
Confidence 7778888888888777664 77778889999999999999975 33332221 112455566554 45688888899
Q ss_pred HCCceeeeccC-CCCCCC------------cccccccccccccccccc
Q psy13354 336 SANIICNKNSI-PNDPEK------------PYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 336 ~~GI~v~~~~~-p~~~~~------------~~~~~~lRi~~~~~~t~~ 370 (1342)
.+||.++.++. ...... ....+.+|||++..+|.+
T Consensus 315 ~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~e 362 (386)
T COG1104 315 LAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEE 362 (386)
T ss_pred ccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHH
Confidence 89999997542 111000 111256999999988853
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=219.63 Aligned_cols=321 Identities=14% Similarity=0.068 Sum_probs=215.0
Q ss_pred cCceeeeecCC-----C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCC
Q psy13354 27 NNNIELIASEN-----Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHS 97 (1342)
Q Consensus 27 ~~~i~l~a~~n-----~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~s 97 (1342)
.+.++|..+++ + .++.+++++.+++..... ..|+...+..++++++++++...+|.. +.+++++|
T Consensus 31 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G 104 (409)
T PLN02656 31 KRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKF------NGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSG 104 (409)
T ss_pred CeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCC
Confidence 45688887765 2 345588888777753211 124444556688887777777665532 44555558
Q ss_pred HHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 98 GSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 98 Gs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
+++|+..++.++++|||+|+++++.++.+ .......|..+..+++..++++.+|++.+++.+++.++.+++.+++|+
T Consensus 105 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~---~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NP 181 (409)
T PLN02656 105 CTQAIDVALSMLARPGANILLPRPGFPIY---ELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNP 181 (409)
T ss_pred hHHHHHHHHHHHhCCCCeEEEeCCCCCcH---HHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCC
Confidence 89999999999999999999887666543 333455677544444322345789999999988765555555554433
Q ss_pred Ccc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC--CCcEEEecCCccCCCCCe---eEEEEe----
Q psy13354 178 SQY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP--FADFITSTTHKSLRGPRG---GFILMK---- 242 (1342)
Q Consensus 178 ~~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~--~~Divv~S~sK~l~gp~G---G~iv~~---- 242 (1342)
++. .++++|+++|++||++||+|++|....+....+.+. ++ ...++++||||.| +.+| ||++++
T Consensus 182 tG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f-~~pGlRiG~~i~~~~~~ 260 (409)
T PLN02656 182 CGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRW-IVPGWRLGWFVTTDPSG 260 (409)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhc-cCcceeEEEEEEeCccc
Confidence 322 379999999999999999999998654432222211 11 1247789999998 6666 999984
Q ss_pred ----chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCCeEEE
Q psy13354 243 ----KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKSHIIL 317 (1342)
Q Consensus 243 ----~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~~~v~ 317 (1342)
+++++.+...... .++++.+.+.++..++.+....++++.++.+.++++.+.+.|.+.+ +.....+.+++++|
T Consensus 261 ~~~~~~~~~~~~~~~~~--~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w 338 (409)
T PLN02656 261 SFRDPKIVERIKKYFDI--LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVM 338 (409)
T ss_pred ccccHHHHHHHHHHHhh--hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEE
Confidence 4677777653222 2334455666665555432234677888899999999999998864 32223467789999
Q ss_pred EEccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 318 VDLRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 318 i~~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++++.. ..+.+++..+++++||.+.|+..++. .+++|++++.
T Consensus 339 ~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~------~~~iRi~~~~ 385 (409)
T PLN02656 339 VKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGL------KNWLRITFAA 385 (409)
T ss_pred EecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCC------CCeEEEEeCC
Confidence 998632 12346677888888999998866642 3579999996
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=217.65 Aligned_cols=317 Identities=15% Similarity=0.165 Sum_probs=212.8
Q ss_pred eeecCCCCcHH----HHHHHhHHHHhccccCCCCCCc-cCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHH
Q psy13354 32 LIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRY-YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVF 106 (1342)
Q Consensus 32 l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~-~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al 106 (1342)
.++++||++.. +++++.+++. +|+.++.+++. |+....+.+||+ .+++++|.+++++++ +|+.|+..++
T Consensus 2 ~f~s~dyLgl~~~~~~~~~~~~a~~-~~g~~~~~sr~~yg~~~~~~~LE~----~lA~~~g~e~al~~~-sG~~a~~~~i 75 (392)
T PLN03227 2 NFATHDFLSTSSSPTLRQTALESLS-HYGCGSCGPRGFYGTIDAHLELEQ----CMAEFLGTESAILYS-DGASTTSSTV 75 (392)
T ss_pred CCcCcCccCCCCCHHHHHHHHHHHH-HhCCCCcccccccCChHHHHHHHH----HHHHHhCCCcEEEec-CcHHHHHHHH
Confidence 46788888776 8889888885 67777776654 455566777777 999999999888888 9999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh----------cCCeEEEEcCCC
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK----------NKPKLIIAGASA 176 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~----------~~~~liv~~~s~ 176 (1342)
.++++|||+|++....|++ ....+...+. .++.+++++. -+++.+.+.+.+ ..+++|++.+..
T Consensus 76 ~~l~~~GD~Vl~~~~~h~s---~~~~~~l~~~--~~~~~~~~d~--~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~ 148 (392)
T PLN03227 76 AAFAKRGDLLVVDRGVNEA---LLVGVSLSRA--NVRWFRHNDM--KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLY 148 (392)
T ss_pred HHhCCCCCEEEEeccccHH---HHHHHHHcCC--eEEEeCCCCH--HHHHHHHHHhhhhccccccccCCCcEEEEEcCCc
Confidence 9999999999977755544 3333344444 4444555411 123333334431 134566665443
Q ss_pred CC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-----CCC--CCCCCCcEEEecCCccCCCCCeeEEEEechhHH
Q psy13354 177 YS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-----EYP--NPVPFADFITSTTHKSLRGPRGGFILMKKKYKK 247 (1342)
Q Consensus 177 ~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-----~~~--~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~ 247 (1342)
++ ...|+++|.++|++||+++|+||+|++|..+.. .+. .+...+|++++|++|++ |+.||++++++++++
T Consensus 149 ~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~~gg~v~~~~~~~~ 227 (392)
T PLN03227 149 KNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GSVGGMTVGSEEVVD 227 (392)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hccCcEEecCHHHHH
Confidence 33 555899999999999999999999986655321 111 12334699999999998 899999999998888
Q ss_pred HHhhccCCccccCCcHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee---------CCCCCeEEE
Q psy13354 248 IINSAVFPGIQGGPLMHV-IAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS---------GGTKSHIIL 317 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~-~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~---------~~~~~~~v~ 317 (1342)
.++.....+.++++.+|. ++++..++..... .++..+++.++.+++++.|.+.+++... ....++++.
T Consensus 228 ~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~ 305 (392)
T PLN03227 228 HQRLSGSGYCFSASAPPFLAKADATATAGELA--GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIY 305 (392)
T ss_pred HHHHhCcCccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEE
Confidence 776555555666654454 3334445544433 2456888999999999999875543211 123467788
Q ss_pred EEccCCCCC---------HHHHHHHHHHCCceeeecc------CCCCCCCcccccccccccccccccc
Q psy13354 318 VDLRNKKIT---------GKIAESILESANIICNKNS------IPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 318 i~~~~~~~~---------~~~~~~ll~~~GI~v~~~~------~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+.+.+...+ .++...+++ +||++.+.. +|..| +..+|++++..+|.+
T Consensus 306 i~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gi~~~~~~~~~~~~~~~~P-----~~~iR~~~~~~~t~e 367 (392)
T PLN03227 306 LRLSDQEATRRTDETLILDQIAHHSLS-EGVAVVSTGGHVKKFLQLVP-----PPCLRVVANASHTRE 367 (392)
T ss_pred EEeCCHHHhhhhhhhhHHHHHHHHHHH-CCCEEEecccccCCcCCCCC-----CceEEEEecCCCCHH
Confidence 887542211 245555555 599986532 23333 357999999988854
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=216.47 Aligned_cols=320 Identities=20% Similarity=0.202 Sum_probs=209.5
Q ss_pred cCceeeeecCC--C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 27 NNNIELIASEN--Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n--~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
++.|++..+++ + .+|.+.+++.+.+. .+..+.+...... +...+.+.+++.+++++|.+..++++ +|++++.
T Consensus 39 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~---g~~~~~~~l~~~la~~~~~~~~i~~~-~g~~~~~ 113 (385)
T PRK05958 39 RRMLNFASNDYLGLARHPRLIAAAQQAAR-RYGAGSGGSRLVT---GNSPAHEALEEELAEWFGAERALLFS-SGYAANL 113 (385)
T ss_pred ceEEEeeCCCcccCCCCHHHHHHHHHHHH-hcCCCCCCcCccc---CCcHHHHHHHHHHHHHhCCCcEEEEC-cHHHHHH
Confidence 35577776654 2 34669999988885 4432222222111 12244555666899999977666666 8899888
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCCC--c
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAYS--Q 179 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~~--~ 179 (1342)
.++.+++++||+|++....|+.. .......|..+. .++. .|++.+++.+++. ++.++++++.+++ .
T Consensus 114 ~~l~~~~~~gd~V~~~~~~~~~~---~~~~~~~g~~~~--~~~~-----~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~ 183 (385)
T PRK05958 114 AVLTALAGKGDLIVSDKLNHASL---IDGARLSRARVR--RYPH-----NDVDALEALLAKWRAGRALIVTESVFSMDGD 183 (385)
T ss_pred HHHHHhCCCCCEEEEeCccCHHH---HHHHHhcCCceE--EeCC-----CCHHHHHHHHHhccCCCeEEEEEecccCCCC
Confidence 88888899999999877555443 334455566443 3343 2889999988764 3455655443333 3
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CC-CCC--CCC-C-CcEEEecCCccCCCCCeeEEEEechhHHHHhhcc
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GE-YPN--PVP-F-ADFITSTTHKSLRGPRGGFILMKKKYKKIINSAV 253 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~-~~~--~l~-~-~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~ 253 (1342)
..++++|+++|++||++||+||+|+.|.++. +. ... .+. . .+++++|+||++ |+.||++++++++++.+....
T Consensus 184 ~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~Gg~~~~~~~~~~~~~~~~ 262 (385)
T PRK05958 184 LAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKAL-GSSGAAVLGSETLIDYLINRA 262 (385)
T ss_pred cCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhc-ccCCcEEEcCHHHHHHHHHhC
Confidence 5689999999999999999999998765532 11 111 111 2 347889999999 778899999998888776543
Q ss_pred CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 254 FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 254 ~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
.++.+++..++...+++.+..+..... ....+++.++++++.+.|.+.|+++.. +.++++++.+++...+.++...+
T Consensus 263 ~~~~~~~~~~~~~~aa~~aal~~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 339 (385)
T PRK05958 263 RPFIFTTALPPAQAAAARAALRILRRE-PERRERLAALIARLRAGLRALGFQLMD--SQSAIQPLIVGDNERALALAAAL 339 (385)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHcCCCcCC--CCCCEEEEEeCCHHHHHHHHHHH
Confidence 344443333444444443334433323 557788999999999999988877533 35667788876433344666666
Q ss_pred HHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++ +||.+.+...+..+.+ ..++|++++..++.
T Consensus 340 ~~-~gI~v~~~~~~~~~~~---~~~lRis~~~~~~~ 371 (385)
T PRK05958 340 QE-QGFWVGAIRPPTVPAG---TSRLRITLTAAHTE 371 (385)
T ss_pred HH-CCceEecccCCCCCCC---CceEEEEecCCCCH
Confidence 54 5999987554433221 35799999876553
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=217.05 Aligned_cols=317 Identities=16% Similarity=0.133 Sum_probs=216.5
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---C-ceEecCCHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---A-ANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~-~vi~~~sGs~ 100 (1342)
...+.+..+.+.+ ++.+.+++.+.+.+.. ..|+...+..++++++++++...+|.. + .+++++|+++
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~ 100 (387)
T PRK07683 28 DNLISLTIGQPDFPTPSHVKEAAKRAITENY-------TSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASE 100 (387)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHH
Confidence 4457777775433 3457888777764221 123444556789998888887665642 3 4666658899
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
|+..++.+++.+||+|+++.+.++.+ .......|. ++++++.+ +++.+|++.+++.+.+ +++++++++++||
T Consensus 101 al~~~~~~l~~~gd~Vl~~~p~y~~~---~~~~~~~g~--~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~i~i~~p~NPt 174 (387)
T PRK07683 101 AIDIAFRTILEPGTEVILPAPIYPGY---EPIIRLCGA--KPVFIDTRSTGFRLTAEALENAITE-KTRCVVLPYPSNPT 174 (387)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCccch---HHHHHHcCC--EEEEeecCcccCCCCHHHHHHhcCc-CceEEEEeCCCCCC
Confidence 99999999999999999877655443 334455676 45555655 4567889999998865 4566666666666
Q ss_pred c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-----CcEEEecCCccCCCCCe---eEEEEechhH
Q psy13354 179 Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-----ADFITSTTHKSLRGPRG---GFILMKKKYK 246 (1342)
Q Consensus 179 ~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-----~Divv~S~sK~l~gp~G---G~iv~~~~l~ 246 (1342)
+ ..++++|+++|+++|++||+|++|....+.. ...+.... ..++++|+||.+ |.+| ||++++++++
T Consensus 175 G~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~s~SK~~-~~pGlRiG~i~~~~~l~ 252 (387)
T PRK07683 175 GVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQ-PHTSIAHFPEMREKTIVINGLSKSH-SMTGWRIGFLFAPSYLA 252 (387)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCC-CcCChhhccCCcCCeEEEeeccccc-cCccceeEEEEcCHHHH
Confidence 2 2358999999999999999999998654432 21221111 258899999999 6567 9999999988
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC-CC
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK-KI 325 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~-~~ 325 (1342)
+.+.... .+...+++...+.++...+ .....+.+..++++.++++++.+.|.+.|+.+.. +.+++++|+.++.. ..
T Consensus 253 ~~~~~~~-~~~~~~~~~~~q~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 329 (387)
T PRK07683 253 KHILKVH-QYNVTCASSISQYAALEAL-TAGKDDAKMMRHQYKKRRDYVYNRLISMGLDVEK-PTGAFYLFPSIGHFTMS 329 (387)
T ss_pred HHHHHHH-HhccCCCChHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHHHcCCcccC-CCeeEEEEEecccCCCC
Confidence 8887642 3333333344444444333 3333356677888899999999999988876533 45677888877653 23
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 330 ~~~~~~~ll~~~gI~v~pg~~f~~~~----~~~~Ri~~~~ 365 (387)
T PRK07683 330 SFDFALDLVEEAGLAVVPGSAFSEYG----EGYVRLSYAY 365 (387)
T ss_pred HHHHHHHHHHhCCEEEcCchhhCCCC----CCeEEEEecC
Confidence 45677788888899999876554322 4679999985
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-19 Score=216.55 Aligned_cols=326 Identities=14% Similarity=0.100 Sum_probs=220.0
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC-C-CceEecCCHHHHHHHHHHH--
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA-E-AANVQPHSGSQANQAVFFS-- 108 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~-~-~~vi~~~sGs~A~~~al~a-- 108 (1342)
.++..+.++.+++++.+.+...+ +++.+..+.......+..+.+++.+++++|. + +.+++++|+|+++..++.+
T Consensus 29 ~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~ 106 (406)
T PRK09295 29 SAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWG 106 (406)
T ss_pred CcccccCCHHHHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhh
Confidence 34567788889999888775332 2222222222233345555688899999997 3 5677776889999988876
Q ss_pred --ccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 109 --VLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 109 --l~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
++++||+|++...+|++.+..+. .....|+.+..+ +.+.++.+|++++++++++ ++++++++.++++ ...|+
T Consensus 107 ~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v--~~~~~~~~d~~~l~~~i~~-~t~lv~l~~~~n~tG~~~~~ 183 (406)
T PRK09295 107 NSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVI--PLNPDGTLQLETLPALFDE-RTRLLAITHVSNVLGTENPL 183 (406)
T ss_pred hhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEE--ecCCCCCCCHHHHHHhcCC-CcEEEEEecchhcccccCCH
Confidence 46899999988877765443333 345567755444 5566788999999999876 4566665554444 45599
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---------
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--------- 253 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--------- 253 (1342)
++|.++|+++|+++++|++|+.|...-.. . ...+|++++|+||.+ ||.| |+++.++++.+.+....
T Consensus 184 ~~i~~~~~~~~~~vivD~a~~~g~~~~~~--~-~~~~D~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~ 259 (406)
T PRK09295 184 AEMIALAHQHGAKVLVDGAQAVMHHPVDV--Q-ALDCDFYVFSGHKLY-GPTGIGILYVKEALLQEMPPWEGGGSMIATV 259 (406)
T ss_pred HHHHHHHHHcCCEEEEEcccccCccccCc--h-hcCCCEEEeehhhcc-CCCCcEEEEEchHhHhhCCCcccCCceeeee
Confidence 99999999999999999999877541110 0 113699999999976 8999 99999998766553210
Q ss_pred ------------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEc
Q psy13354 254 ------------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 254 ------------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~ 320 (1342)
..+..|+++.+...++..++....+.+.+.+.++..+.++++.+.|.+. |+++..+.....++.+.+
T Consensus 260 ~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~ 339 (406)
T PRK09295 260 SLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNL 339 (406)
T ss_pred ecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEE
Confidence 1123356777777787777766655577888889999999999999886 677765322345666666
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCC-Ccc-ccccccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPE-KPY-FTSGIRLGSSAITTR 369 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~-~~~~lRi~~~~~~t~ 369 (1342)
+.. +.+.+...|+++||.++.+..-..+. ..+ .++.+|+|++.++|.
T Consensus 340 ~~~--~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~ 388 (406)
T PRK09295 340 GKH--HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTH 388 (406)
T ss_pred CCc--CHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCH
Confidence 542 33444556678899997643111000 000 024699999998774
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-19 Score=212.87 Aligned_cols=301 Identities=16% Similarity=0.185 Sum_probs=195.6
Q ss_pred HHHHHhHHHHhccccCCCCCCccCCcc--hHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEee
Q psy13354 43 VMEAQGTLLTNKYAEGYPGKRYYGGCK--FIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120 (1342)
Q Consensus 43 v~eal~~~l~~~~~~g~~~~~~~~~~~--~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~ 120 (1342)
+.++..+++. +|+.++.++++.++.. +.......+++.+++++|.+.+++++ ||++++..++.+++++||.|++..
T Consensus 20 ~~~~~~~a~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~~~i~~-g~~~a~~~~~~~l~~~gd~Vl~~~ 97 (370)
T TIGR02539 20 LTEAARKALV-EFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDEARVTH-GAREGKFAVMHALCKEGDWVVLDG 97 (370)
T ss_pred CcHHHHHHHH-HHhhccccccccccccccccchHHHHHHHHHHHHhCCCceEEEC-ChHHHHHHHHHHhhCCCCEEEECC
Confidence 5566666664 5666666665543321 12222333455799999999887776 999999999999999999999755
Q ss_pred ccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh------cCCeEEEEcCCCCC--cccCHHHHHHHHHH
Q psy13354 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK------NKPKLIIAGASAYS--QYIDFERFYHIAKN 192 (1342)
Q Consensus 121 ~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~------~~~~liv~~~s~~~--~~~~l~~I~~la~~ 192 (1342)
. .|++....+...|..+..++...+.++.+|++++++.+++ ..+++|+++.++++ ...++++|+++|++
T Consensus 98 ~---~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~ 174 (370)
T TIGR02539 98 L---AHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCRE 174 (370)
T ss_pred c---ccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHH
Confidence 3 3444444556777755555432224588999999998864 24567776655544 55599999999999
Q ss_pred cCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe--eEEEEechhHHHHhhccCCccccC-------CcH
Q psy13354 193 INSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG--GFILMKKKYKKIINSAVFPGIQGG-------PLM 263 (1342)
Q Consensus 193 ~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G--G~iv~~~~l~~~l~~~~~~~~~~~-------~~~ 263 (1342)
+|+++|+|++|+.|...... .....|++++|+||++ ++.| ||+++++++++.+.....++.++. +..
T Consensus 175 ~~~~livDea~~~g~~~~~~---~~~~~di~v~s~sK~~-~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 250 (370)
T TIGR02539 175 KGVPLLLNCAYTVGRMPVSA---KEIGADFIVGSGHKSM-AASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRG 250 (370)
T ss_pred cCCeEEEECccccCCcCCCH---HHcCCCEEEeeCcccc-cCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccc
Confidence 99999999999886432110 0113689999999999 4445 999999999998887655544322 111
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee-CCCCCeEEEEEccCCC-------CCHHHHHHHHH
Q psy13354 264 HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS-GGTKSHIILVDLRNKK-------ITGKIAESILE 335 (1342)
Q Consensus 264 ~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~~~~~~v~i~~~~~~-------~~~~~~~~ll~ 335 (1342)
....++..++... .+.++.. .+..++++++++.|.+.|+++.. .+..+++++++++... .....+...|.
T Consensus 251 ~~~~~~~~al~~~-~~~l~~~-~~~~~~~~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~ 328 (370)
T TIGR02539 251 APIVTMMASFPHV-VERVKRW-DEEVKKTRWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELK 328 (370)
T ss_pred cHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHH
Confidence 2333333333322 2233333 33345567899999999998742 3566888888875321 11233455555
Q ss_pred HCCce-eeeccCCCCCCCcccccccccccc
Q psy13354 336 SANII-CNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 336 ~~GI~-v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++||. +. |+. .+++|+++.
T Consensus 329 e~GI~~ir----~~~------~~~iRis~~ 348 (370)
T TIGR02539 329 KRGIHGIR----SGQ------TKYFKLSVY 348 (370)
T ss_pred hCCCcccc----CCc------ceEEEEEec
Confidence 56997 33 211 247999974
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-19 Score=216.27 Aligned_cols=318 Identities=12% Similarity=0.098 Sum_probs=209.6
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---C-ceEecCCHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---A-ANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~-~vi~~~sGs~ 100 (1342)
...+.+..+++.+ ++.+.+++.+.+.+. ....|....+..++++++++++.+.+|.+ + .+++++|+++
T Consensus 30 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~ 103 (405)
T PRK09148 30 ADIIDLGMGNPDLPTPQHIVDKLCETAQDP------RTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKE 103 (405)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHcCc------ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHH
Confidence 3457777776543 344777766655311 11224445566788998888887766743 3 4666658888
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh--cCCeEEEEcCCCCC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK--NKPKLIIAGASAYS 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~--~~~~liv~~~s~~~ 178 (1342)
|+..++.+++.+||+|+++.+.++.+. ......|.. +++++.+.++. +++++++.+.. .+++++++++|+||
T Consensus 104 al~~~~~~l~~~gd~Vl~~~P~y~~~~---~~~~~~g~~--v~~v~~~~~~~-~~~~l~~~~~~~~~~~~~v~l~~P~NP 177 (405)
T PRK09148 104 GFANMAQAITAPGDVILCPNPSYPIHA---FGFIMAGGV--IRSVPAEPDEE-FFPALERAVRHSIPKPIALIVNYPSNP 177 (405)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCcccH---HHHHhcCCE--EEEEeCCCCCC-CccCHHHHHhhccccceEEEEeCCCCC
Confidence 999999999999999998876665543 333556764 44445442221 23344444432 24566677666666
Q ss_pred -----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 -----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 -----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
....+++|+++|++||++||+||+|....+......+... ...++++||||.+ |.+| ||+++++++
T Consensus 178 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~-~~pGlR~G~~v~~~~~ 256 (405)
T PRK09148 178 TAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTF-SMAGWRMGFAVGNERL 256 (405)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEecccccc-CCcchheeeeeCCHHH
Confidence 2224688999999999999999999865443221221111 1236689999999 7667 999999999
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC-
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK- 324 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~- 324 (1342)
++.+......... ++..+.+.++...+.. ...+++..++.+.++++++.+.|.+.|+.+. .+.+++++|+.++...
T Consensus 257 i~~l~~~~~~~~~-~~~~~~q~~~~~~L~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~g~f~~~~l~~~~~ 333 (405)
T PRK09148 257 IAALTRVKSYLDY-GAFTPIQVAATAALNG-PQDCIAEMRELYKKRRDVLVESFGRAGWDIP-PPAASMFAWAPIPEAFR 333 (405)
T ss_pred HHHHHHHHHHhcc-CCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-CCCeeEEEEEECCCccC
Confidence 8888764322222 2334555555444432 2346778888999999999999999887643 3567889999987532
Q ss_pred --CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 325 --ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 325 --~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.+.+++..++++.||.+.++..++... .+++|++++
T Consensus 334 ~~~~~~~~~~ll~~~gV~v~pg~~f~~~~----~~~~Ri~~~ 371 (405)
T PRK09148 334 HLGSLEFSKLLVEKADVAVAPGVGFGEHG----DGYVRIALV 371 (405)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhCCCC----CCeEEEEec
Confidence 235777888877899999886654322 357999886
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.85 E-value=9e-19 Score=209.90 Aligned_cols=327 Identities=21% Similarity=0.208 Sum_probs=225.2
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC--ceEecCCHHHHHHHHHHHc-
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA--ANVQPHSGSQANQAVFFSV- 109 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~--~vi~~~sGs~A~~~al~al- 109 (1342)
.++..++|+.|++++.+.+.+.+ +++.+..+.......++.+++++.+++++|++. .++++.|+|.|+..++.++
T Consensus 5 ~~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~ 82 (371)
T PF00266_consen 5 NAGTGPMPKSVLEAISDYLRNFY--ANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLL 82 (371)
T ss_dssp TSSS-B-BHHHHHHHHHHHHHSG--SSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhh--hcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccc
Confidence 46678899999999998886554 333223333344455666779999999999885 5666779999999999999
Q ss_pred --cCCCCEEEEeeccCCccchhhHHh-hhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHH
Q psy13354 110 --LNPGDTIMGMSLQEGGHLTHGMML-NMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFER 185 (1342)
Q Consensus 110 --~~pGD~Vlv~~~~~~~~~s~~~~~-~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~ 185 (1342)
+.+||+|++....+++....+... ...|..+..++. +.++.+|++++++.+++.+..+++.+..+.+ ...|+++
T Consensus 83 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~--~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~ 160 (371)
T PF00266_consen 83 NPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPA--DPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEE 160 (371)
T ss_dssp HHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEE--GTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHH
T ss_pred cccccccccccccccccccccccccccccchhhhccccc--cccchhhhhhhhhhhccccceEEeecccccccEEeeece
Confidence 799999999888777665444443 467876665544 4567789999999998544444444444444 5559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCcc-------
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPGI------- 257 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~~------- 257 (1342)
|.++|+++|+++++|.+|++|...-.. . .-.+|++++|.|| |+||.| |+++.+++..+.+++....+.
T Consensus 161 I~~~~~~~~~~~~vD~~~~~g~~~id~--~-~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~ 236 (371)
T PF00266_consen 161 IAKLAHEYGALLVVDAAQSAGCVPIDL--D-ELGADFLVFSSHK-LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSL 236 (371)
T ss_dssp HHHHHHHTTSEEEEE-TTTTTTSS--T--T-TTTESEEEEESTS-TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHH
T ss_pred ehhhhhccCCceeEechhccccccccc--c-ccccceeeecccc-cCCCCchhhheehhhhhhccccccccccccccccc
Confidence 999999999999999999988762111 0 1137999999999 779999 999999988888854333222
Q ss_pred -------------ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCc-EEeeC---CCCCeEEEEEc
Q psy13354 258 -------------QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI-RIVSG---GTKSHIILVDL 320 (1342)
Q Consensus 258 -------------~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~-~~~~~---~~~~~~v~i~~ 320 (1342)
.|+++.+...++..++......+.+.+.++..++++++.+.|.+.+. .+..+ .....++.+.+
T Consensus 237 ~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 316 (371)
T PF00266_consen 237 QEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNL 316 (371)
T ss_dssp HHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEE
T ss_pred hhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEee
Confidence 24677777777777777765567888889999999999999999754 44321 22245666666
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCC--Cccccccccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPE--KPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~--~~~~~~~lRi~~~~~~t~ 369 (1342)
+. .+.+.+...|++.||.+..+..-..+. ..-..+.+|+|++.++|.
T Consensus 317 ~~--~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~ 365 (371)
T PF00266_consen 317 PG--SDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTE 365 (371)
T ss_dssp TT--SSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSH
T ss_pred cC--CCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCH
Confidence 43 244555555555599999732111000 000025799999998874
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=220.30 Aligned_cols=312 Identities=12% Similarity=0.067 Sum_probs=205.2
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHcc-CCCCE
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVL-NPGDT 115 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~-~pGD~ 115 (1342)
|..+++++.+.+.. .. .....|+...+..++++++++++.+..|.+ +.+++++|+++|+..++.+++ +|||+
T Consensus 90 P~~~~~~~~~~~~~-~~---~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~ 165 (481)
T PTZ00377 90 PADVVARAKEYLNA-IG---GGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDG 165 (481)
T ss_pred CHHHHHHHHHHHHh-CC---CcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCE
Confidence 33566666554432 11 122346667778899998888888766643 455566588889999999998 79999
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC-c----ccCHHH
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS-Q----YIDFER 185 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~-~----~~~l~~ 185 (1342)
|+++.+.++ .+...+...|..+..+++..+++|.+|++.+++.+++. +++++++++++|| + ...+++
T Consensus 166 Vlv~~P~y~---~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~ 242 (481)
T PTZ00377 166 VMIPIPQYP---LYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEE 242 (481)
T ss_pred EEECCCCch---hHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHH
Confidence 997775554 44555566777444443333345789999999988752 4565555565666 2 225899
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcC-CCCCC------CC-C-----CcEEEecCCccCCCCCe---eEEEE---echhH
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAG-EYPNP------VP-F-----ADFITSTTHKSLRGPRG---GFILM---KKKYK 246 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~-~~~~~------l~-~-----~Divv~S~sK~l~gp~G---G~iv~---~~~l~ 246 (1342)
|+++|++||++||+||+|....+..+ .+.+. +. . .-++++||||.+.+++| ||+++ +++++
T Consensus 243 i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li 322 (481)
T PTZ00377 243 IIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVR 322 (481)
T ss_pred HHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHH
Confidence 99999999999999999976544222 22211 11 0 13678999998545556 99986 78888
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHh---------ccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEE
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEV---------LKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHII 316 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~---------l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v 316 (1342)
+.+...... ..+++.+.+.++..++... ...+.....+.+.++++.+.+.|.+. |+.+. .+.+++++
T Consensus 323 ~~l~~~~~~--~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~-~p~gg~fl 399 (481)
T PTZ00377 323 EQIYKLASI--NLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQ-PVEGAMYA 399 (481)
T ss_pred HHHHHHhhe--ecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEee-cCCeeEEE
Confidence 888764322 2234455666665554210 11123333445788899999999886 77764 35678899
Q ss_pred EEEccCC------------CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 317 LVDLRNK------------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 317 ~i~~~~~------------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
|++++-+ ..+..++..+++++||.+.|+..++...+ .+++|++++
T Consensus 400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~---~~~~Rls~~ 456 (481)
T PTZ00377 400 FPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPG---TYHFRITIL 456 (481)
T ss_pred EeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCC---CCEEEEEEC
Confidence 9776421 11334667888888999999876654222 357999998
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-19 Score=202.99 Aligned_cols=312 Identities=17% Similarity=0.188 Sum_probs=233.8
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al 106 (1342)
.+.|.+++..+++.|+++|......+. .+....+.+.+.+.+...++++ ++++++++||.|+++++
T Consensus 6 ~~Ll~PGP~~v~~~V~~am~~~~~~h~------------s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav 73 (383)
T COG0075 6 RLLLTPGPVPVPPRVLLAMARPMVGHR------------SPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAV 73 (383)
T ss_pred ceeeeCCCCCCCHHHHHHhcCCCCCCC------------CHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHH
Confidence 466899999999999999887664322 1223356666778999999988 78888889999999999
Q ss_pred HHccCCCCEEEEeeccCCccch--hhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-CeEE-EEc-CCCCCccc
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLT--HGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-PKLI-IAG-ASAYSQYI 181 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s--~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-~~li-v~~-~s~~~~~~ 181 (1342)
.+++.|||+|++.. .+.|+ ....++..|..+..+..+ +.-.+|++++++.++++. .+++ ++| .+..+...
T Consensus 74 ~sl~~pgdkVLv~~---nG~FG~R~~~ia~~~g~~v~~~~~~--wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvln 148 (383)
T COG0075 74 ASLVEPGDKVLVVV---NGKFGERFAEIAERYGAEVVVLEVE--WGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLN 148 (383)
T ss_pred HhccCCCCeEEEEe---CChHHHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccC
Confidence 99999999999765 33333 356678888866666544 445679999999998543 3333 333 24444566
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCC-----
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFP----- 255 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~----- 255 (1342)
|+++|+++|++||+++|||++.++|...-....+ .+|+++++.+|++++|+| |++..+++..+.+.....+
T Consensus 149 pl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~w---giDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylD 225 (383)
T COG0075 149 PLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEW---GIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLD 225 (383)
T ss_pred cHHHHHHHHHHcCCEEEEEecccCCCcccchhhc---CccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeec
Confidence 9999999999999999999998887662111000 379999999999999999 9999988666555433222
Q ss_pred ------------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC-CCC-eEEEEEcc
Q psy13354 256 ------------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG-TKS-HIILVDLR 321 (1342)
Q Consensus 256 ------------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~-~~~-~~v~i~~~ 321 (1342)
....||+.+...|+..++..+.+++++.+.++++++++.+++.++.+|++++..+ ..+ .+..+.++
T Consensus 226 L~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P 305 (383)
T COG0075 226 LKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVP 305 (383)
T ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEECC
Confidence 2234677888899999999999989999999999999999999999999987722 122 34455666
Q ss_pred CCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 322 NKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 322 ~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
....+.+....+++++||.+.++..+.... .+||+....
T Consensus 306 ~g~~~~~~~~~~~~~~g~~i~gg~~~l~gk------ifRIGhMG~ 344 (383)
T COG0075 306 EGVDDKKVRRALLKEYGVEIAGGQGPLKGK------IFRIGHMGN 344 (383)
T ss_pred CCCCcHHHHHHHHHhCCEEecccccccCcc------EEEEecCcc
Confidence 655555666688888899999775555433 599998774
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-19 Score=211.16 Aligned_cols=311 Identities=16% Similarity=0.109 Sum_probs=209.4
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC---ceEecCCHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA---ANVQPHSGSQANQAV 105 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~---~vi~~~sGs~A~~~a 105 (1342)
.+.+.+++..+.+.+.+++..... . + .+...++.+.+++.+++++|++. .+++++|||+|+..+
T Consensus 4 ~~l~~pgp~~~~~~v~~~~~~~~~-~----------~--~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~ 70 (363)
T TIGR02326 4 YLLLTPGPLTTSRTVKEAMLFDWC-T----------W--DSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAV 70 (363)
T ss_pred eeEecCCCCCCCHHHHHHhCCCCC-C----------C--ChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHH
Confidence 345788888888888877554331 1 1 12344556668889999999863 577777999999999
Q ss_pred HHHccCCCCEEEEeec-cCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-CeEEE-EcCCCCC-ccc
Q psy13354 106 FFSVLNPGDTIMGMSL-QEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-PKLII-AGASAYS-QYI 181 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~-~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-~~liv-~~~s~~~-~~~ 181 (1342)
+.+++.+||.+++... .++.. ........|..+..+ +.++++.+|++++++++++++ .+++. .+..+.+ ...
T Consensus 71 ~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~~~v--~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~ 146 (363)
T TIGR02326 71 IGSAVPKDGKLLVVINGAYGAR--IVQIAEYLGIPHHVV--DTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILN 146 (363)
T ss_pred HHhcCCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEE--eCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccC
Confidence 9999889988776442 22211 123345667754444 556677889999999987643 34443 3333333 555
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCC----
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFP---- 255 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~---- 255 (1342)
|+++|.++|++||+++++|++|++|...- .... .+|++++|+|||++||.| |+++.+++.++.+.....+
T Consensus 147 ~i~~I~~l~~~~g~~livD~~~~~g~~~~----~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~ 222 (363)
T TIGR02326 147 PIEAVAKLAHRHGKVTIVDAMSSFGGIPI----DIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLD 222 (363)
T ss_pred cHHHHHHHHHHcCCEEEEEccccccCccc----chhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeec
Confidence 99999999999999999999998765421 1111 369999999999988999 9999998776655321111
Q ss_pred --------------ccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC-CCC-eEEEE
Q psy13354 256 --------------GIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRGIRIVSGG-TKS-HIILV 318 (1342)
Q Consensus 256 --------------~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~-~~~-~~v~i 318 (1342)
..+ +++.+...++..++.....+ ++++..+++.++++++.+.|.+.|+.+..++ ... .+.++
T Consensus 223 ~~~~~~~~~~~~~~~~f-t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 301 (363)
T TIGR02326 223 LYDQWRCMEDNHGKWRF-TSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSF 301 (363)
T ss_pred HHHHHHHHhccCCCCCC-CCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEE
Confidence 111 34566677777666665443 4777889999999999999999998875432 123 34567
Q ss_pred EccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 319 DLRNK-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 319 ~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+++. ..+...+...|+++||.+.++..+. ..++|+++...++
T Consensus 302 ~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~-------~~~iRi~~~~~~~ 345 (363)
T TIGR02326 302 YSPEDPDYRFADFYQRLKEQGFVIYPGKVSQ-------VDCFRIGNIGEVD 345 (363)
T ss_pred ECCCCCCCCHHHHHHHHHHCCEEEECCcCCC-------CCEEEEecCCCCC
Confidence 76643 1233334444556699998654321 2469999766554
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=222.32 Aligned_cols=325 Identities=14% Similarity=0.105 Sum_probs=213.5
Q ss_pred CceeeeecCCCCcHHH-HHHHhHHHHh----c-cccCCCCCCccCCcchHHHHHHHHHHHHHHHhC----CC-CceEecC
Q psy13354 28 NNIELIASENYTSLAV-MEAQGTLLTN----K-YAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN----AE-AANVQPH 96 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v-~eal~~~l~~----~-~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g----~~-~~vi~~~ 96 (1342)
..|.|..+||.+.... .+.+.+.... . ....++.-..|+...+..++++++++++.+.+| .+ +.+++++
T Consensus 47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~ 126 (496)
T PLN02376 47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSG 126 (496)
T ss_pred ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEcc
Confidence 3588999999884442 3333332211 0 111233334466667778999999999888766 33 4556665
Q ss_pred CHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhh-hCCceeEEEEecC--CCCCCCCHHHHHHHHHh-----cCCe
Q psy13354 97 SGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLN-MSGKWFNSICYGL--NKKEKIDYKKVEYLAKK-----NKPK 168 (1342)
Q Consensus 97 sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~-~~g~~~~~v~~~~--~~~~~id~e~Le~~i~~-----~~~~ 168 (1342)
|+++|+..++.+++.|||.|+++.+.|+++. ..+. ..|. +++++++ ++++.+|++.++.++.. .+++
T Consensus 127 Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~---~~~~~~~G~--~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k 201 (496)
T PLN02376 127 GATGANETIMFCLADPGDVFLIPSPYYAAFD---RDLRWRTGV--EIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVK 201 (496)
T ss_pred chHHHHHHHHHHhCCCCCEEEECCCCccchH---HHHHhhCCC--EEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCee
Confidence 8888999999999999999998886666553 2233 3566 5555555 35678999999865431 3567
Q ss_pred EEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC------C----CCc--EEEecCCccC
Q psy13354 169 LIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV------P----FAD--FITSTTHKSL 231 (1342)
Q Consensus 169 liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l------~----~~D--ivv~S~sK~l 231 (1342)
++++++|+|| ....+++|+++|++||++||+||+|....+....+.+.. + ..+ +++.||||.|
T Consensus 202 ~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~ 281 (496)
T PLN02376 202 GLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDM 281 (496)
T ss_pred EEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccC
Confidence 6777777777 333688899999999999999999986555332222211 1 012 4578999999
Q ss_pred CCCCe---eEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHhCCcE
Q psy13354 232 RGPRG---GFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV--LKPDFKIYQKQVVKNAKILSKILDQRGIR 305 (1342)
Q Consensus 232 ~gp~G---G~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~--l~~~~~~~~~~l~~~a~~l~~~L~~~g~~ 305 (1342)
|.+| ||++++ +.+.+.+.... .+ +......+.+++..+.+. ....+.+.++++.++++.+.+.|.+.|+.
T Consensus 282 -glpGlRvG~li~~~~~l~~~~~~~~-~~--~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~ 357 (496)
T PLN02376 282 -GLPGFRVGIVYSFNDSVVSCARKMS-SF--GLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIA 357 (496)
T ss_pred -CCCcceEEEEEECCHHHHHHHHHHh-hc--CCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 6666 999995 45555544322 22 222344455444443221 12234455778888899999999988887
Q ss_pred EeeCCCCCeEEEEEccCCCC-------CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 306 IVSGGTKSHIILVDLRNKKI-------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 306 ~~~~~~~~~~v~i~~~~~~~-------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+.. +.+++++|++++.... ..+++..++++.||.+.|+..++... ++++|++++..
T Consensus 358 ~~~-~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~----~g~~Ri~fa~~ 420 (496)
T PLN02376 358 CLT-SNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTE----PGWFRICFANM 420 (496)
T ss_pred ccC-CCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCC----CCEEEEEeeCC
Confidence 644 5677999999975321 14677778888899999987664432 46799999863
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-19 Score=207.68 Aligned_cols=292 Identities=18% Similarity=0.207 Sum_probs=200.0
Q ss_pred cCCCCcHH----HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--CCceEecCCHHHHHHHHHHH
Q psy13354 35 SENYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--EAANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 35 ~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~~~vi~~~sGs~A~~~al~a 108 (1342)
-+||++.+ ++++..+++. .|. +.. ++.+++++.+++++|. +.+++++ ||++|+..++.+
T Consensus 26 ~~~ylgl~~~~~~~~~~~~~~~-~~~---------g~~----~~~~~Le~~lA~~~g~~~e~ilv~~-gg~~a~~~~~~a 90 (346)
T TIGR03576 26 LYDLTGLAGGFKIDEEDLELLE-TYV---------GPA----IFEEKVQELGREHLGGPEEKILVFN-RTSSAILATILA 90 (346)
T ss_pred ccccccCCCChhHHHHHHHHHH-Hhc---------CCH----HHHHHHHHHHHHHcCCCcceEEEEC-CHHHHHHHHHHH
Confidence 36777766 7888777774 442 122 4555555699999998 4666666 999999999999
Q ss_pred ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC----cccCHH
Q psy13354 109 VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS----QYIDFE 184 (1342)
Q Consensus 109 l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~----~~~~l~ 184 (1342)
+++|||+|+++.+..+.|.+....+...|.. ++. .+ ++++++. . .++++|++++++.. ...+++
T Consensus 91 l~~~gd~Vli~~~d~p~~~s~~~~~~l~ga~--~~~--~~-----~l~~l~~-~--~~~~lIiitg~s~~G~v~~~~~L~ 158 (346)
T TIGR03576 91 LEPPGRKVVHYLPEKPAHPSIPRSCKLAGAE--YFE--SD-----ELSELKK-I--DGTSLVVITGSTMDLKVVSEEDLK 158 (346)
T ss_pred hCCCCCEEEECCCCCCCchhHHHHHHHcCCE--Eec--cC-----CHHHHhh-C--cCceEEEEECCCCCCcccCHHHHH
Confidence 9999999997555456676666666777763 332 12 4555432 1 23566665544333 225899
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhc-CCCCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccCCcH
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAA-GEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLM 263 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~ 263 (1342)
+|+++|++||++|++||||+.|..+. +.........|++++|+||+++|+.|||+++++++++.+.....++.++ .+.
T Consensus 159 ~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r~G~v~~~~~li~~l~~~~~~~~~s-~~~ 237 (346)
T TIGR03576 159 RVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPRGGLLAGRKELVDKIKSVGEQFGLE-AQA 237 (346)
T ss_pred HHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccceEEEEeCHHHHHHHHHhhcCcccC-ccH
Confidence 99999999999999999998765421 1111000125899999999998888999999999999999877777665 445
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 264 HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 264 ~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
+.++++..++.. .. .+..++.+.++++++.+.+.+ +.+. ++..+|+|++++.. .+.+++..+++++||.+.+
T Consensus 238 ~~~~aa~~aL~~-~~--~~~~~~~l~~r~~~~~~~l~~--~~~~--~~~~~f~~~~~~~~-~~~~~~~~ll~~~gV~v~~ 309 (346)
T TIGR03576 238 PLLAAVVRALEE-FE--LSRIRDAFKRKEEVYLRLFDK--LNVE--RTPTGFVIKGVEEE-KLIEIGLDLLRNYGIITIT 309 (346)
T ss_pred HHHHHHHHHHhh-cc--HHHHHHHHHHHHHHHHHHHHh--CCCC--cCCCeEEEEeCCCC-CHHHHHHHHHHhCCEEEeC
Confidence 566655555543 22 345567778888877777774 3332 23456899988642 2457888999999999998
Q ss_pred ccCCCCCCCccccccccccccccc
Q psy13354 344 NSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 344 ~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
+..+. . .++++|++++...
T Consensus 310 ~~~f~--~---~~~~vRis~~~~~ 328 (346)
T TIGR03576 310 AVGMP--G---ASKTLRFDLAAKD 328 (346)
T ss_pred CcccC--C---CCCeEEEEEecCh
Confidence 64432 1 1457999988643
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-19 Score=215.77 Aligned_cols=316 Identities=12% Similarity=0.055 Sum_probs=216.3
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.+++..+.+.++ +.+.+++.+.+.. . ...|....+..++++++++++++.+|.+ +.+++++|+++|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-~------~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 105 (402)
T PRK06107 33 RSIVDLTVGEPDFDTPDHIKQAAVAAIER-G------ETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQA 105 (402)
T ss_pred CCEEEcCCCCCCCCCCHHHHHHHHHHHHc-C------CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHH
Confidence 34577877765544 5577777776642 1 1235555667789998999998888864 346666578899
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++++||+|+++++.++++ ...+...+. .++.++.+ +++.+|++.+++.+.+ +++++++++++||
T Consensus 106 l~~~~~~~~~~gd~vl~~~p~y~~y---~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPt 179 (402)
T PRK06107 106 IFLALMATLEAGDEVIIPAPYWVSY---PDMVLANDG--TPVIVACPEEQGFKLTPEALEAAITP-RTRWLILNAPSNPT 179 (402)
T ss_pred HHHHHHHhcCCCCEEEEecCCCcCH---HHHHHHcCC--EEEEecCCcccCCCCCHHHHHhhcCc-CceEEEEECCCCCC
Confidence 9999999999999999887655544 333344454 34444443 4567899999998865 4455555455555
Q ss_pred c----ccCHHHHHHHHHHc-CCEEEEEcccchhhhhcCCCCCCCC------CCcEEEecCCccCCCCCe---eEEEEech
Q psy13354 179 Q----YIDFERFYHIAKNI-NSYFMVDMAHYAGLIAAGEYPNPVP------FADFITSTTHKSLRGPRG---GFILMKKK 244 (1342)
Q Consensus 179 ~----~~~l~~I~~la~~~-gi~LIvDea~~~g~~~~~~~~~~l~------~~Divv~S~sK~l~gp~G---G~iv~~~~ 244 (1342)
+ ..++++|+++|++| |++||+|++|....+.....++... ...++++|+||.| |++| ||++++++
T Consensus 180 G~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~~~~~~ 258 (402)
T PRK06107 180 GAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTY-AMTGWRIGYAAGPAD 258 (402)
T ss_pred CcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhh-cCcccceeeeecCHH
Confidence 2 22578889999998 9999999999754332222221111 1247789999999 6666 99999999
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
+++.+........ .++..+.+.++..++.. ...+.+..++.+.++++.+.+.|++. |+.+. .+.+++++|++++..
T Consensus 259 ~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~-~p~gg~~~~~~~~~~ 335 (402)
T PRK06107 259 LIAAINKLQSQSS-SCPSSISQAAAAAALNG-DQSFVTESVAVYKQRRDYALALLNAIPGLSCL-VPDGAFYLYVNCAGL 335 (402)
T ss_pred HHHHHHHHHHhcc-cCCChHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-CCCcceEEeeecccc
Confidence 9888876433222 23445555555544432 23467788888999999999999886 66653 356788999987421
Q ss_pred -----------CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 324 -----------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 324 -----------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
..+.+++..+++++||.+.++..++. .+++|++++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~------~~~iRis~~~ 382 (402)
T PRK06107 336 IGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL------SPYFRLSIAT 382 (402)
T ss_pred cccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC------CCeEEEEeCC
Confidence 12356788888888999998876654 2479999985
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-19 Score=213.73 Aligned_cols=320 Identities=15% Similarity=0.096 Sum_probs=213.4
Q ss_pred ccCceeeeecCC-----C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--------CC-C
Q psy13354 26 QNNNIELIASEN-----Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--------AE-A 90 (1342)
Q Consensus 26 ~~~~i~l~a~~n-----~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--------~~-~ 90 (1342)
..+.+++..+.. + .++.+.+++.+.+... ....|+...+..++++++++++.+.++ .+ +
T Consensus 32 ~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~------~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~ 105 (412)
T PTZ00433 32 PKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQ------ECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKD 105 (412)
T ss_pred CCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcC------CCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChh
Confidence 345688877663 2 3444888877766421 112344455667888877777765432 22 4
Q ss_pred ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEE
Q psy13354 91 ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLI 170 (1342)
Q Consensus 91 ~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~li 170 (1342)
.+++++|+++|+..++.+++.+||+|+++.+.++.+ .......|..+..++++.++++.+|++++++.+++ +++++
T Consensus 106 ~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~---~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~-~~~~i 181 (412)
T PTZ00433 106 NVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHY---ETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDD-RTKAL 181 (412)
T ss_pred hEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccH---HHHHHHcCCEEEEEecCccccCcCCHHHHHHHhcc-CceEE
Confidence 455565889999999999999999999877655543 44456677755555443334678999999988876 45666
Q ss_pred EEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC---C-CcEEEecCCccCCCCCe---eE
Q psy13354 171 IAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP---F-ADFITSTTHKSLRGPRG---GF 238 (1342)
Q Consensus 171 v~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~---~-~Divv~S~sK~l~gp~G---G~ 238 (1342)
++++++|| + ..++++|+++|++||++||+||+|....+....+.+... . ..++++||||.+ |.+| ||
T Consensus 182 ~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~pGlRlG~ 260 (412)
T PTZ00433 182 IMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNL-VVPGWRLGW 260 (412)
T ss_pred EEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhc-CCCCeeEEE
Confidence 66666666 2 336889999999999999999999754432222121111 1 247789999999 6666 99
Q ss_pred EEEe------chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC
Q psy13354 239 ILMK------KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT 311 (1342)
Q Consensus 239 iv~~------~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~ 311 (1342)
++++ +++++.+...... .. +.+...+.++..++.+....++++.++.+.++++.+.+.|++. |+.+. .+.
T Consensus 261 ~i~~~p~~~~~~~~~~~~~~~~~-~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~p~ 337 (412)
T PTZ00433 261 LLLVDPHGNGGDFLDGMKRLGML-VC-GPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPT-MPR 337 (412)
T ss_pred EEEeCCcccHHHHHHHHHHHhhc-cC-CCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-CCC
Confidence 9972 3466666553221 12 2334455555545443223467788889999999999999874 66543 356
Q ss_pred CCeEEEEEccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 312 KSHIILVDLRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 312 ~~~~v~i~~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+++++|+.++.. ..+.+++..+++++||.+.++..++. .+++|++++.
T Consensus 338 gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~------~~~iRis~~~ 390 (412)
T PTZ00433 338 GSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHM------PGFTRLTISR 390 (412)
T ss_pred eeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCC------CCeEEEEecC
Confidence 788999988642 13567888888778999998765543 2479999875
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-19 Score=222.05 Aligned_cols=318 Identities=13% Similarity=0.043 Sum_probs=205.6
Q ss_pred cCceeeeecCC---CC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CC-CceEecCCH
Q psy13354 27 NNNIELIASEN---YT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AE-AANVQPHSG 98 (1342)
Q Consensus 27 ~~~i~l~a~~n---~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~-~~vi~~~sG 98 (1342)
.+.+.|..|+. .+ |+.+.+++.+++.. . ..|+...+..++++++++++....+ .+ +.+++++|+
T Consensus 146 ~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~-~-------~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~ 217 (517)
T PRK13355 146 THILKLNIGNPAPFGFRTPDEVVYDMAQQLTD-T-------EGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGV 217 (517)
T ss_pred CCeEEecCcCCCcCCCCCCHHHHHHHHHHhhc-C-------CCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcH
Confidence 35688887553 23 55588887777632 1 1255566677888877777765543 33 455666578
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++++..++.+++++||+|+++.+.++.+ .......|..+..++.+.+.+|.+|++++++.++++ ++++++++|+||
T Consensus 218 ~eal~~~~~~l~~~Gd~Vli~~P~y~~y---~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~-~k~i~i~nP~NP 293 (517)
T PRK13355 218 SELINLSMSALLDDGDEVLIPSPDYPLW---TACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSR-TKAIVIINPNNP 293 (517)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcCH---HHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcC-ceEEEEECCCCC
Confidence 8899999999999999999877665544 444566676444443333346889999999988764 455555566666
Q ss_pred -c-cc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC----CcEEEecCCccCCCCCe---eEEEEe--ch
Q psy13354 179 -Q-YI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF----ADFITSTTHKSLRGPRG---GFILMK--KK 244 (1342)
Q Consensus 179 -~-~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~----~Divv~S~sK~l~gp~G---G~iv~~--~~ 244 (1342)
+ .. .+++|+++|++||++||+||+|....+....+.+.... .-++++||||.+ +++| ||++++ ++
T Consensus 294 TG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~i~~~~~~ 372 (517)
T PRK13355 294 TGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSH-MIAGYRIGWMILSGNKR 372 (517)
T ss_pred CCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhc-cCcccceEEEEeeCchh
Confidence 2 22 48999999999999999999997654432222221111 124468999999 6667 999954 43
Q ss_pred ----hHHHHhhccCCccccCCcHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEE
Q psy13354 245 ----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV--LKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIIL 317 (1342)
Q Consensus 245 ----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~--l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~ 317 (1342)
+++.+..... ...+.+.+.+.++..++... ..+++.. ..++.++++++.+.|.+. |+.+. .+.+++++|
T Consensus 373 ~~~~~~~~l~~~~~--~~~~~~~~~q~a~~~aL~~~~~~~~~~~~-~~~~~~~r~~l~~~L~~~~g~~~~-~p~g~fy~~ 448 (517)
T PRK13355 373 IAKDYIEGLNMLAN--MRLCSNVPAQSIVQTALGGHQSVKDYLVP-GGRVYEQRELVYNALNAIPGISAV-KPKAAFYIF 448 (517)
T ss_pred hHHHHHHHHHHHhc--CcCCcChHHHHHHHHHhcCCccHHHHHHH-HHHHHHHHHHHHHHHhcCCCcccC-CCCeeeEEE
Confidence 3333332211 11234455666665555321 1112332 234566788899999886 77754 466788889
Q ss_pred EEccCC----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 318 VDLRNK----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 318 i~~~~~----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++++.. ..+.+++..+++++||.+.++..|+... .+++|++++.
T Consensus 449 ~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~----~~~~Ris~~~ 496 (517)
T PRK13355 449 PKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDK----PDHFRVVYLP 496 (517)
T ss_pred eecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCC----cCEEEEEeCC
Confidence 888642 2345788888888999999877664322 4679999853
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-19 Score=213.69 Aligned_cols=317 Identities=12% Similarity=0.051 Sum_probs=210.6
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC----C--CceEecCCH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA----E--AANVQPHSG 98 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~----~--~~vi~~~sG 98 (1342)
...+.+..+++..+ +.+++++.+.+.. . ..|+...+..++++++++++.+.+|. + +.+++++|+
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~-~-------~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga 99 (393)
T TIGR03538 28 KPPIALSIGEPKHPTPAFVLEALRENLHG-L-------STYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGT 99 (393)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHhhc-c-------CCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCc
Confidence 45688887775543 3377777665421 1 22444555668888888888776553 3 245666578
Q ss_pred HHHHHHHHHHccCCCCE--EEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcC
Q psy13354 99 SQANQAVFFSVLNPGDT--IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGA 174 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~--Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~ 174 (1342)
++|+..++.++++|||+ |+++.+.++.+ .......|. +++.++.+ +++.+|++++++.+.+ +++++++++
T Consensus 100 ~~al~~~~~~l~~~gd~~~vlv~~P~y~~~---~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~ 173 (393)
T TIGR03538 100 REALFAFAQAVINPGQAPLVVMPNPFYQIY---EGAALLAGA--EPYFLNCTAENGFLPDFDAVPESVWR-RCQLLFVCS 173 (393)
T ss_pred HHHHHHHHHHHcCCCCcceEEecCCCCcch---HHHHHhcCC--eEEEeeccccCCCCCCHHHHHHHHhh-cceEEEEeC
Confidence 88999999999999996 77666554443 334456676 45555554 3467899999988865 556666667
Q ss_pred CCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-CCCCC------CC----CCcEEEecCCccCCCCCe--
Q psy13354 175 SAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-EYPNP------VP----FADFITSTTHKSLRGPRG-- 236 (1342)
Q Consensus 175 s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~~~~~------l~----~~Divv~S~sK~l~gp~G-- 236 (1342)
++|| +...+++|+++|++||++||+||+|....+... ...+. .. ...++++||||.+ +.+|
T Consensus 174 p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~~~GlR 252 (393)
T TIGR03538 174 PGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRS-NLPGLR 252 (393)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhc-CCcccc
Confidence 7777 222589999999999999999999975443211 11111 00 1137899999987 5666
Q ss_pred -eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeE
Q psy13354 237 -GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHI 315 (1342)
Q Consensus 237 -G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~ 315 (1342)
||+++++++++.+........ .+.+.+.+.++..++. . .++++..++.++++++.+.+.|.+. +.+ ..+.++++
T Consensus 253 vG~~i~~~~l~~~~~~~~~~~~-~~~~~~~q~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~p~gg~f 327 (393)
T TIGR03538 253 SGFVAGDAEILKAFLRYRTYHG-CAMPIPTQLASIAAWN-D-EQHVRENRALYREKFAAVLEILGQV-LDL-ELPDAGFY 327 (393)
T ss_pred eEEEecCHHHHHHHHHHHHhhc-cCcCHHHHHHHHHHhc-C-hHHHHHHHHHHHHHHHHHHHHHHhh-Ccc-cCCCeeEE
Confidence 999999988887765432222 2233444444443432 2 2467777888899999999999874 333 24677899
Q ss_pred EEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCC--Cccccccccccccc
Q psy13354 316 ILVDLRNKKITGKIAESILESANIICNKNSIPNDPE--KPYFTSGIRLGSSA 365 (1342)
Q Consensus 316 v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~--~~~~~~~lRi~~~~ 365 (1342)
+|++++ ..+.+++..+++++||.+.|+..+.... ...+.+++|++++.
T Consensus 328 ~~~~~~--~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~ 377 (393)
T TIGR03538 328 LWPKVP--GDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA 377 (393)
T ss_pred EEEECC--CCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC
Confidence 999997 2346777788888899999887654321 11124679999875
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-19 Score=204.04 Aligned_cols=285 Identities=17% Similarity=0.167 Sum_probs=207.4
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCE
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDT 115 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~ 115 (1342)
..+....++++.+.+.+. +++.++...++|+ .+++++|.++++.++ |||.|++.++.++ ++|||+
T Consensus 11 p~i~~~e~~~v~~vl~sg---------~i~~G~~v~~FE~----~~ae~~G~k~ava~~-sgT~AL~laL~al~ig~GDe 76 (374)
T COG0399 11 PSIGEEELAAVQEVLKSG---------WLTGGPFVRRFEQ----AFAEYLGVKYAVAVS-SGTAALHLALLALAIGPGDE 76 (374)
T ss_pred CCcchHHHHHHHHHHHcC---------CeecChHHHHHHH----HHHHHhCCCeEEEec-ChHHHHHHHHHhcCCCCCCE
Confidence 335556777777777532 3444666777787 999999999999998 9999999999977 799999
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcC
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNIN 194 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~g 194 (1342)
|++++.++ ++..+.+...|. +++++++| +++.+|++.+++++++.+++++.++ .++.+.++++|.++|++||
T Consensus 77 VI~ps~Tf---vATan~i~~~Ga--~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVh--l~G~~~dm~~i~~la~~~~ 149 (374)
T COG0399 77 VIVPSFTF---VATANAVLLVGA--KPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVH--LAGQPCDMDAIMALAKRHG 149 (374)
T ss_pred EEecCCch---HHHHHHHHHcCC--eEEEEecCCcccCCCHHHHHHHcccCCeEEEEeh--hccCCCCHHHHHHHHHHcC
Confidence 99888655 455666666777 78888888 6699999999999998766666664 5555579999999999999
Q ss_pred CEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCeeEEEEec-hhHHHHhhccCCc--------------c
Q psy13354 195 SYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRGGFILMKK-KYKKIINSAVFPG--------------I 257 (1342)
Q Consensus 195 i~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~GG~iv~~~-~l~~~l~~~~~~~--------------~ 257 (1342)
++||+|+||++|..+.++..+.+. |+.++||+ |.++...||++++++ ++.+.++.....+ .
T Consensus 150 l~vIEDaAqa~Ga~y~gk~vGt~G--d~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G 227 (374)
T COG0399 150 LPVIEDAAQAHGATYKGKKVGSFG--DIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELG 227 (374)
T ss_pred CeEEEEcchhccCeecCccccccc--ceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecc
Confidence 999999999999999988877776 67777776 999777889999987 5555554322111 1
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCC----CeEEEEEccCCCCCHHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTK----SHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~----~~~v~i~~~~~~~~~~~~~~ 332 (1342)
++.-++..++|...+.++.+ ++..++.+++++++.+.|++.. +.+...+.+ .+...+.+++...+.+.+..
T Consensus 228 ~N~rm~~iqAAigl~QL~~l----~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~ 303 (374)
T COG0399 228 YNYRLTEIQAAIGLAQLERL----DEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEEGISRDALME 303 (374)
T ss_pred cccCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCCCCCHHHHHH
Confidence 23333455666655555544 4556777888889999998753 443332222 24445555554557778888
Q ss_pred HHHHCCceeeeccCCC
Q psy13354 333 ILESANIICNKNSIPN 348 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~ 348 (1342)
.|++.||.......|.
T Consensus 304 ~L~~~gi~~~~~~~P~ 319 (374)
T COG0399 304 SLKEAGVGAVVYFRPL 319 (374)
T ss_pred HHHhCCCCceEEeecc
Confidence 8888888844444443
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-19 Score=210.32 Aligned_cols=326 Identities=14% Similarity=0.132 Sum_probs=219.6
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHcc
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~ 110 (1342)
.++..++|+.+++++.+.+...+ .++.+..+.......+...++++.+++++|.+ ..+++++|+++|+..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~ 82 (373)
T cd06453 5 NAATSQKPQPVIDAIVDYYRHYN--ANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG 82 (373)
T ss_pred CccccCCCHHHHHHHHHHHHhcC--CCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh
Confidence 35567888889999888875322 33333333333445566666888999999977 355566689999999999997
Q ss_pred C---CCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 111 N---PGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 111 ~---pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
. +||+|++++..+++..... ...+..|..+.. ++.+.++.+|++++++.+.+ ++++++++.++++ ...|++
T Consensus 83 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~--v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~ 159 (373)
T cd06453 83 RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKV--VPVDDDGQLDLEALEKLLTE-RTKLVAVTHVSNVLGTINPVK 159 (373)
T ss_pred hcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEE--eecCCCCCcCHHHHHHHhcC-CceEEEEeCcccccCCcCCHH
Confidence 7 8999998876665543322 233456774444 45567788999999999876 5566666554444 445999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCC--------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFP-------- 255 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~-------- 255 (1342)
+|.++|+++|++|++|++|+.|...... ....+|++++|+||++++ .| |++++++++++.+......
T Consensus 160 ~i~~~~~~~~~~li~D~a~~~~~~~~~~---~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 235 (373)
T cd06453 160 EIGEIAHEAGVPVLVDGAQSAGHMPVDV---QDLGCDFLAFSGHKMLGP-TGIGVLYGKEELLEEMPPYGGGGEMIEEVS 235 (373)
T ss_pred HHHHHHHHcCCEEEEEhhhhcCceeeec---cccCCCEEEeccccccCC-CCcEEEEEchHHhhcCCCeecCCCcccccc
Confidence 9999999999999999998766542110 011369999999999955 66 9999999887776543211
Q ss_pred ------------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCC-CCCeEEEEEcc
Q psy13354 256 ------------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGG-TKSHIILVDLR 321 (1342)
Q Consensus 256 ------------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~-~~~~~v~i~~~ 321 (1342)
+..++++.....++..++......+++.+.++..++++++.+.|.+. ++++..++ ...+++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 315 (373)
T cd06453 236 FEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLE 315 (373)
T ss_pred ccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEEC
Confidence 11134555556666666666655577888899999999999999887 57775421 23557777765
Q ss_pred CCCCCHHHHHHHHHHCCceeeeccCCCCCC-Ccc-ccccccccccccccc
Q psy13354 322 NKKITGKIAESILESANIICNKNSIPNDPE-KPY-FTSGIRLGSSAITTR 369 (1342)
Q Consensus 322 ~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~-~~~~lRi~~~~~~t~ 369 (1342)
.. +.+.+...+.++||.+.+......+. ..+ ..+++|++++..+|.
T Consensus 316 ~~--~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~ 363 (373)
T cd06453 316 GI--HPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTE 363 (373)
T ss_pred Cc--CHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCH
Confidence 42 33444444455799987654211100 000 135799999988774
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.5e-19 Score=212.63 Aligned_cols=325 Identities=16% Similarity=0.155 Sum_probs=214.3
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc--
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al-- 109 (1342)
++...+|+.+.+++.+.+...+ +.+.++.+.......+..+++++.+++++|.+ +.+++++|+++++..++.++
T Consensus 25 ~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~ 102 (403)
T TIGR01979 25 AATSQKPQQVIDAVAEYYRNSN--ANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGD 102 (403)
T ss_pred ccccCCCHHHHHHHHHHHHhCC--CCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhh
Confidence 4456777889999887765433 22222111111222334455778999999987 45677768899999888875
Q ss_pred --cCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 110 --LNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 110 --~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
+++||+|+++...|++....+ ......|..+.. ++.++++.+|++++++.+.+ ++++++++.++++ ...|++
T Consensus 103 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~--v~~~~~~~~~~~~l~~~i~~-~~~lv~~~~~~~~tG~~~~~~ 179 (403)
T TIGR01979 103 SNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKF--IPLDDDGTLDLDDLEKLLTE-KTKLVAITHVSNVLGTVNPVE 179 (403)
T ss_pred hcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEE--EecCCCCCCCHHHHHHHhcc-CCeEEEEEcccccccccCCHH
Confidence 578999998887776654333 334456764444 45567788999999999876 4566665554443 455999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC---------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF--------- 254 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~--------- 254 (1342)
+|.++|+++|+++++|++|+.|...... . ...+|++++|+||++ ||.| |++++++++.+.+.....
T Consensus 180 ~i~~~~~~~~~~~ivD~a~~~g~~~~~~--~-~~~~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~ 255 (403)
T TIGR01979 180 EIAKLAHQVGAKVLVDGAQAVPHMPVDV--Q-ALDCDFYVFSGHKMY-GPTGIGVLYGKEELLEQMPPFLGGGEMIAEVS 255 (403)
T ss_pred HHHHHHHHcCCEEEEEchhhcCccccCc--c-ccCCCEEEEeccccc-CCCCceEEEEchHHHhcCCCeecCCCceeecc
Confidence 9999999999999999999876542110 0 113699999999988 8888 999999887766542111
Q ss_pred -----------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC---CCeEEEEE
Q psy13354 255 -----------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT---KSHIILVD 319 (1342)
Q Consensus 255 -----------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~---~~~~v~i~ 319 (1342)
.+..++++.....++..++....+.+.+.+.++..+.++++.+.|.+. |+++..+.. .++++.+.
T Consensus 256 ~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~ 335 (403)
T TIGR01979 256 FEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFN 335 (403)
T ss_pred cCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEE
Confidence 011245555666666666655444467778899999999999999886 788765321 24566666
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCC-cc-ccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEK-PY-FTSGIRLGSSAITTR 369 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~-~~-~~~~lRi~~~~~~t~ 369 (1342)
++.. +...+...|+++||.+.++.....+.. .+ ..+.+|++++.+++.
T Consensus 336 ~~~~--~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~ 385 (403)
T TIGR01979 336 VEGV--HPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTE 385 (403)
T ss_pred eCCc--CHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCH
Confidence 6542 233445666778999976431100000 00 024699999988753
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-19 Score=218.70 Aligned_cols=325 Identities=14% Similarity=0.096 Sum_probs=216.2
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccC------CCCCCccCCcchHHHHHHHHHHHHHHHhC----CC-CceEecC
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEG------YPGKRYYGGCKFIDLIEKIAINRLKKIFN----AE-AANVQPH 96 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g------~~~~~~~~~~~~~~~Le~~~~~~la~~~g----~~-~~vi~~~ 96 (1342)
..|.|..+||.++..++........+..... ......|....+..+|++++++++.+.+| .+ +.+++++
T Consensus 39 g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~ 118 (468)
T PLN02450 39 GIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTA 118 (468)
T ss_pred eeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEcc
Confidence 4588999999988875444433321100000 01112355556677899988888887655 22 4455565
Q ss_pred CHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhh-hCCceeEEEEecC--CCCCCCCHHHHHHHHHh-----cCCe
Q psy13354 97 SGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLN-MSGKWFNSICYGL--NKKEKIDYKKVEYLAKK-----NKPK 168 (1342)
Q Consensus 97 sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~-~~g~~~~~v~~~~--~~~~~id~e~Le~~i~~-----~~~~ 168 (1342)
|+++++..++.++++|||.|+++.+.|+++. ..+. ..|. ++++++. ++++.+|++.+++.+.+ .+++
T Consensus 119 Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~---~~~~~~~g~--~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k 193 (468)
T PLN02450 119 GATSANETLMFCLAEPGDAFLLPTPYYPGFD---RDLKWRTGV--EIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVK 193 (468)
T ss_pred ChHHHHHHHHHHhCCCCCEEEECCCCCCchH---HHHhhcCCc--EEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCee
Confidence 7788999999999999999998776665543 2333 3566 5555565 35677899999988764 2567
Q ss_pred EEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-------------CCCcEEEecCCcc
Q psy13354 169 LIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-------------PFADFITSTTHKS 230 (1342)
Q Consensus 169 liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-------------~~~Divv~S~sK~ 230 (1342)
++++++|+|| +...+++|+++|++||++||+||+|+...+....+.+.+ ...-++++||||.
T Consensus 194 ~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~ 273 (468)
T PLN02450 194 GVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKD 273 (468)
T ss_pred EEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEecccc
Confidence 7777777777 333688999999999999999999975444322222111 1124778999999
Q ss_pred CCCCCe---eEEEEech-hHHHHhhccCCccccCCcHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHhCCc
Q psy13354 231 LRGPRG---GFILMKKK-YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV--LKPDFKIYQKQVVKNAKILSKILDQRGI 304 (1342)
Q Consensus 231 l~gp~G---G~iv~~~~-l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~--l~~~~~~~~~~l~~~a~~l~~~L~~~g~ 304 (1342)
| |.+| ||++++++ +.+.+... ..+ +..+.+.+.++..++.+. ...++++.++++.++++.+.+.|++.|+
T Consensus 274 ~-~l~GlRiG~li~~~~~l~~~~~~~-~~~--~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi 349 (468)
T PLN02450 274 L-GLPGFRVGAIYSNDEMVVSAATKM-SSF--GLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGI 349 (468)
T ss_pred C-CCCCccEEEEEECCHHHHHHHHHH-hhc--CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9 6666 99999865 45555443 222 223355555555444331 1124667788999999999999999988
Q ss_pred EEeeCCCCCeEEEEEccCCCC------CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 305 RIVSGGTKSHIILVDLRNKKI------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 305 ~~~~~~~~~~~v~i~~~~~~~------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++. .+.+++++|++++.... ..+++..+++++||.+.|+..++... ++++|++++..
T Consensus 350 ~~~-~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~----~g~~Rl~f~~~ 412 (468)
T PLN02450 350 KCL-KSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTE----PGWFRVCFANM 412 (468)
T ss_pred ccc-CCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCC----CCEEEEEecCC
Confidence 754 35677899999864221 13567778888899999887665432 46799999873
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-19 Score=214.02 Aligned_cols=325 Identities=15% Similarity=0.108 Sum_probs=218.4
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc-
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL- 110 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~- 110 (1342)
.++..++++.+++++.+.+...+ +.+.+.+. .......+.+.+++.+++++|.+ +.+++++|+++++..++.+++
T Consensus 6 ~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~ 82 (381)
T PRK02948 6 YAATTPMSKEALQTYQKAASQYF--GNESSLHD-IGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLN 82 (381)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC--CCCccccH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence 34566788889999988775322 22322222 22334456667888999999976 566677688999998888775
Q ss_pred ---CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHH
Q psy13354 111 ---NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 111 ---~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~ 185 (1342)
++||+|++....|+++...+..++..|..+..+ +.++++.+|++++++.+++ .+++++++.++++ ...|+++
T Consensus 83 ~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v--~~~~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~tG~~~~~~~ 159 (381)
T PRK02948 83 ALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEI--PVDKSGLIRLVDLERAITP-DTVLASIQHANSEIGTIQPIAE 159 (381)
T ss_pred hccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEE--eeCCCCCCCHHHHHHhcCC-CCEEEEEECCcCCcEeehhHHH
Confidence 578999988877776666665666677755444 5566788999999998865 4566666665555 5559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhH-HHHhh---ccCCccccC
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYK-KIINS---AVFPGIQGG 260 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~-~~l~~---~~~~~~~~~ 260 (1342)
|.++|+++|+++++|++|.+|...... .. ..+|++++|+||++ ||.| |+++.++++. ..+.. ....+..++
T Consensus 160 I~~l~~~~~~~vivD~~~~~g~~~~~~--~~-~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~t 235 (381)
T PRK02948 160 IGALLKKYNVLFHSDCVQTFGKLPIDV--FE-MGIDSLSVSAHKIY-GPKGVGAVYINPQVRWKPVFPGTTHEKGFRPGT 235 (381)
T ss_pred HHHHHHHcCCEEEEEChhhccccccCc--cc-CCCCEEEecHHhcC-CCCcEEEEEEcCCCCCCCcccCCCCCCCcCCCC
Confidence 999999999999999998877542110 00 13699999999988 8988 9999887641 11110 011224466
Q ss_pred CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCC----eEEEEEccCCCCCHHHHHHHHHH
Q psy13354 261 PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKS----HIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 261 ~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~----~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
++.+...++.+++....+ +.++.++++.++++++.+.|++.|+++......+ .++.+.++.. ...++... |++
T Consensus 236 ~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~-l~~ 312 (381)
T PRK02948 236 VNVPGIAAFLTAAENILK-NMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKGI-EGQYTMLE-CNR 312 (381)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCCC-CHHHHHHh-ccc
Confidence 777888888878776554 7788889999999999999999887654422112 2333333321 23345544 566
Q ss_pred CCceeeeccC-------CCC-----CC-Ccccccccccccccccccc
Q psy13354 337 ANIICNKNSI-------PND-----PE-KPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 337 ~GI~v~~~~~-------p~~-----~~-~~~~~~~lRi~~~~~~t~~ 370 (1342)
+||.++.+.. |.. .. .+...+.+|+|++.++|.+
T Consensus 313 ~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~ 359 (381)
T PRK02948 313 RGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKD 359 (381)
T ss_pred CCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHH
Confidence 7999986431 110 00 0001357999999887754
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-19 Score=213.44 Aligned_cols=318 Identities=15% Similarity=0.095 Sum_probs=203.8
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~ 102 (1342)
+.+.+..+++.. ++.+.+++.+.+.... . ......|+...+..+|++++++++.+..|.+ +.+++++|+.+|+
T Consensus 35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al 112 (409)
T PRK07590 35 KIIRLGIGDVTQPLPPAVIEAMHKAVDEMG-T-AETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDT 112 (409)
T ss_pred ceEEecCcCCCCCCCHHHHHHHHHHHhccc-c-cCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHH
Confidence 457888877553 3447888777764211 0 0111234455666788887777776655543 4555564777788
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCce---------eEEEEecCCC--CCCCCHHHHHHHHHhcCCeEEE
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKW---------FNSICYGLNK--KEKIDYKKVEYLAKKNKPKLII 171 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~---------~~~v~~~~~~--~~~id~e~Le~~i~~~~~~liv 171 (1342)
..+ ..++.|||+|++..+.|+.+... +...|.. .++++++.+. ++.+|.+ ..++++++
T Consensus 113 ~~l-~~~~~~gd~V~v~~P~Y~~~~~~---~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-------~~~~k~i~ 181 (409)
T PRK07590 113 GNI-LDIFGPDNTIAVTDPVYPVYVDT---NVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELP-------EEKVDIIY 181 (409)
T ss_pred HHH-HHhcCCCCEEEEeCCCCcchHHH---HHHcCCcccccccccccceeEeecccccCCcccCc-------ccCceEEE
Confidence 875 45678999999887666555433 3444442 1255556542 3444432 14567777
Q ss_pred EcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CCC---CcEEEecCCccCCCCCe---eE
Q psy13354 172 AGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VPF---ADFITSTTHKSLRGPRG---GF 238 (1342)
Q Consensus 172 ~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~~---~Divv~S~sK~l~gp~G---G~ 238 (1342)
+++++|| +...+++|+++|++||++||+||+|....+........ ++. ..++++||||++ |.+| ||
T Consensus 182 l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~pGlRiG~ 260 (409)
T PRK07590 182 LCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTA-GFTGTRCAY 260 (409)
T ss_pred EeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCcccc-CCcCceeEE
Confidence 7777777 33368899999999999999999997644322111111 111 247789999999 6666 99
Q ss_pred EEEechhHHHH-----------hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 239 ILMKKKYKKII-----------NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 239 iv~~~~l~~~l-----------~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
+++++++++.+ ........+.+.+.+.+.++..++......++++.++.+.++++++.+.|.+.|+.+.
T Consensus 261 ~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 340 (409)
T PRK07590 261 TVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESAGFEVY 340 (409)
T ss_pred EEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 99999887621 1111111222333455555554443222246777888999999999999999887753
Q ss_pred eCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.+.+++++|+++++...+.+++..+++++||.+.++..++... .+++|+++.
T Consensus 341 -~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~----~~~iRi~~~ 392 (409)
T PRK07590 341 -GGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSG----EGYFRLSAF 392 (409)
T ss_pred -cCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCC----CCEEEEEcc
Confidence 3467899999998654456778888888899999876554322 357999853
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-19 Score=213.49 Aligned_cols=320 Identities=11% Similarity=0.028 Sum_probs=208.8
Q ss_pred cCceeeeecCC-----CC-cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCC
Q psy13354 27 NNNIELIASEN-----YT-SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHS 97 (1342)
Q Consensus 27 ~~~i~l~a~~n-----~l-~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~s 97 (1342)
.+.|.|..++. +. ++.+++++.+++.... ...|+...+..++++++++++.+.+|.+ +.+++++|
T Consensus 32 ~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~------~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G 105 (409)
T PLN00143 32 RLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAK------FNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLG 105 (409)
T ss_pred CceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcC------CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecC
Confidence 35577777654 33 3448888887775321 1224444556688888888877765543 44555658
Q ss_pred HHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 98 GSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 98 Gs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
+++|+..++.++++|||.|++..+.++.+ .......|..+..+++..++++.+|++++++++.++++.++++ +|+|
T Consensus 106 ~~~al~~~~~~l~~~gd~v~v~~P~y~~~---~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~-nP~N 181 (409)
T PLN00143 106 CKHAAEIIIKVLARPEANILLPRPGFPDV---ETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVII-NPGN 181 (409)
T ss_pred hHHHHHHHHHHHcCCCCEEEEcCCCCcCH---HHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEE-CCCC
Confidence 88899999999999999999877665544 3344566664444433223467899999999886654455555 4555
Q ss_pred C-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCCC--CcEEEecCCccCCCCCe---eEEEEe-c-
Q psy13354 178 S-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVPF--ADFITSTTHKSLRGPRG---GFILMK-K- 243 (1342)
Q Consensus 178 ~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~~--~Divv~S~sK~l~gp~G---G~iv~~-~- 243 (1342)
| +...+++|+++|++||++||+||+|....+....+.. .+.. ..++++||||.| +.+| ||++++ +
T Consensus 182 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f-~~pGlRvG~~v~~~p~ 260 (409)
T PLN00143 182 PCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRW-MIPGWGLGWLVTCDPS 260 (409)
T ss_pred CCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhc-CCCccceEEEEeeCch
Confidence 5 2225889999999999999999999765442221111 1111 247889999998 6666 999984 3
Q ss_pred hh------HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEE-eeCCCCCeEE
Q psy13354 244 KY------KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI-VSGGTKSHII 316 (1342)
Q Consensus 244 ~l------~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~-~~~~~~~~~v 316 (1342)
.+ ++.+........+ ++.+.+.++..++.+....++++..+++.++++++.+.|.+.+... ...+.+++++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~ 338 (409)
T PLN00143 261 GLLQICEIADSIKKALNPAPF--PPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFA 338 (409)
T ss_pred hhhhhHHHHHHHHHHHhccCC--CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEE
Confidence 23 2333332222211 2344555555444332234677788888999999999998865332 2245678999
Q ss_pred EEEccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 317 LVDLRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 317 ~i~~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
|++++.. ..+.+++..+++++||.+.|+..++. .+++|++++.
T Consensus 339 w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~------~~~iRi~~~~ 386 (409)
T PLN00143 339 LVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGL------KNWLRITFAV 386 (409)
T ss_pred EEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCC------CCeEEEEEcC
Confidence 9999742 23457777888888999998766542 3579999984
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-19 Score=211.65 Aligned_cols=310 Identities=15% Similarity=0.138 Sum_probs=204.3
Q ss_pred ceeeeecCC-CCcH-HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC-CC-CceEecCCHHHHHHH
Q psy13354 29 NIELIASEN-YTSL-AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN-AE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 29 ~i~l~a~~n-~l~~-~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g-~~-~~vi~~~sGs~A~~~ 104 (1342)
.+.+..++. +.+| .+ +++.+++.+. ..+ |+...+..++++ .++++++ .+ +.+++++|+++|+..
T Consensus 28 ~~~~~~~e~~~~~~~~~-~~~~~~~~~~-~~~------Y~~~~G~~~lr~----~ia~~~~~~~~~~vi~t~G~~~al~~ 95 (373)
T PRK07324 28 IDSLTLEELLALAGKNP-EAFYQELGQK-KLT------YGWIEGSPEFKE----AVASLYQNVKPENILQTNGATGANFL 95 (373)
T ss_pred CCCCcHHHHHhccCcch-HHHHHHHhcC-Ccc------CCCCCCCHHHHH----HHHHHhcCCChhhEEEcCChHHHHHH
Confidence 345555552 2323 35 7766666422 112 333344557777 5555543 33 445555588999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.+++++||+|++.. +++......+...|..+..++++.+.++.+|++++++.+++ +++++++++++|| ...+
T Consensus 96 ~~~~l~~~gd~Vl~~~---P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~-~~kli~i~~p~NPtG~~~~ 171 (373)
T PRK07324 96 VLYALVEPGDHVISVY---PTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRP-NTKLICINNANNPTGALMD 171 (373)
T ss_pred HHHHhCCCCCEEEEcC---CCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCC-CCcEEEEeCCCCCCCCCCC
Confidence 9999999999999765 44444455566777755444443334567899999988765 4567676666666 2234
Q ss_pred ---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccC
Q psy13354 183 ---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 183 ---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~ 254 (1342)
+++|+++|++||++||+|++|..... .+..++..+. ..++++|+||++ |++| ||+++++++++.++....
T Consensus 172 ~~~l~~i~~~a~~~~~~ii~De~y~~l~~-~~~~~s~~~~~~~~I~~~s~SK~~-~~~G~RiG~i~~~~~li~~~~~~~~ 249 (373)
T PRK07324 172 RAYLEEIVEIARSVDAYVLSDEVYRPLDE-DGSTPSIADLYEKGISTNSMSKTY-SLPGIRVGWIAANEEVIDILRKYRD 249 (373)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcccccccc-CCCCCChhhccCCEEEEecchhhc-CCccceeEEEecCHHHHHHHHHHhC
Confidence 89999999999999999999865333 2222222221 247889999999 6667 999999999888877543
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
....+ .+...+.++..++.. ....++..++.+.++++.+.+.|.+. ++.+.. |.++++.|+.++....+.+++.++
T Consensus 250 ~~~~~-~~~~~q~~a~~~l~~-~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~-p~gg~~~~i~~~~~~~~~~~~~~l 326 (373)
T PRK07324 250 YTMIC-AGVFDDMLASLALEH-RDAILERNRKIVRTNLAILDEWVAKEPRVSYVK-PKAVSTSFVKLDVDMPSEDFCLKL 326 (373)
T ss_pred cEEec-CChHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEC-CCceEEEEEEeCCCCCHHHHHHHH
Confidence 33333 223344444444332 22356667777888888999988876 555533 456677777776555567888998
Q ss_pred HHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++++||.+.|+..++. ++++|++++.
T Consensus 327 l~~~gv~v~pg~~F~~------~~~iRis~~~ 352 (373)
T PRK07324 327 LKETGVLLVPGNRFDL------EGHVRIGYCC 352 (373)
T ss_pred HHhcCEEEECccccCC------CCeEEEEecC
Confidence 8888999998876653 2479999875
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=210.69 Aligned_cols=321 Identities=14% Similarity=0.162 Sum_probs=210.7
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc--
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al-- 109 (1342)
.++....|+.+++++.+.+.... ..++ ..|.......++.+.+++.+++++|.+ ..+++++|+++++..++.++
T Consensus 23 ~~~~~~~p~~v~~a~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~ 99 (397)
T TIGR01976 23 NPAGTQIPQSVADAVSAALTRSN--ANRG-GAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISR 99 (397)
T ss_pred CCccCCCCHHHHHHHHHHHHhcC--CCCC-CCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHh
Confidence 35556778889999888875321 1111 123223344456667888999999986 35667768888887776665
Q ss_pred -cCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 110 -LNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 110 -~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
++|||+|++.+..|++....+ ...+..|..+..+ +.++ ++.+|++++++.+++. +++++++.++++ ...|++
T Consensus 100 ~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~l~~~i~~~-~~lv~i~~~~n~tG~~~~~~ 176 (397)
T TIGR01976 100 RWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWA--RVDEATGELHPDDLASLLSPR-TRLVAVTAASNTLGSIVDLA 176 (397)
T ss_pred cCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEE--eccccCCCcCHHHHHHhcCCC-ceEEEEeCCCCCCCccCCHH
Confidence 689999998776665544333 3446677755544 4443 5789999999998764 455555554444 445999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-CCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCc-------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-PFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPG------- 256 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~------- 256 (1342)
+|+++|++||+++++|++|..|... .... ..+|++++|+|||+ |+..|++++++++++.+......+
T Consensus 177 ~i~~~~~~~~~~~ivD~a~~~~~~~----~~~~~~~~d~~~~s~~K~~-g~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~ 251 (397)
T TIGR01976 177 AITELVHAAGALVVVDAVHYAPHGL----IDVQATGADFLTCSAYKFF-GPHMGILWGRPELLMNLPPYKLTFSYDTGPE 251 (397)
T ss_pred HHHHHHHHcCCEEEEehhhhccccC----CCHHHcCCCEEEEechhhc-CCceEEEEEcHHHHhhCCCccccCccCCCcc
Confidence 9999999999999999998654321 1111 13699999999999 776799999998887776432222
Q ss_pred --cccCCcHHHHHHHHHHHHHhccc--------------hHHHHHHHHHHHHHHHHHHHHhCC-cEEeeC---CCCCeEE
Q psy13354 257 --IQGGPLMHVIAAKAVAFKEVLKP--------------DFKIYQKQVVKNAKILSKILDQRG-IRIVSG---GTKSHII 316 (1342)
Q Consensus 257 --~~~~~~~~~~~Aaa~al~~~l~~--------------~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~---~~~~~~v 316 (1342)
..|+++.+...++..++...... .++...++..+.++++.+.|.+.+ +++..+ ...++++
T Consensus 252 ~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 331 (397)
T TIGR01976 252 RFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTV 331 (397)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceE
Confidence 22444445555554444333211 256667788889999999998875 877653 1245677
Q ss_pred EEEccCCCCCHHHHHHHHHHCCceeeeccC--------CCCCCCccccccccccccccccc
Q psy13354 317 LVDLRNKKITGKIAESILESANIICNKNSI--------PNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 317 ~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~--------p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+.+.+. ...++... |+++||.+..+.. ++.+.. .+++|+|++.++|.
T Consensus 332 ~~~~~~~-~~~~l~~~-L~~~gI~v~~~~~~~~~~~~~~~~~~~---~~~iRis~~~~~t~ 387 (397)
T TIGR01976 332 SFTVHGL-PPQRVVRR-LADQGIDAWAGHFYAVRLLRRLGLNDE---GGVVRVGLAHYNTA 387 (397)
T ss_pred EEEeCCc-CHHHHHHH-HHHCCeEEEeCccchHHHHHHhCCCCC---CCeEEEEeeccCCH
Confidence 7766532 23344544 4566999987532 233211 35799999998764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-19 Score=209.31 Aligned_cols=310 Identities=10% Similarity=0.051 Sum_probs=209.0
Q ss_pred eeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-C-ceEecCCHHHHHH
Q psy13354 30 IELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-A-ANVQPHSGSQANQ 103 (1342)
Q Consensus 30 i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~-~vi~~~sGs~A~~ 103 (1342)
+.+..+++.+ ++.+.+++.+... . . ..|....+..++++++++++.+.+|. + + .+++++|+++|+.
T Consensus 3 ~~~~~g~p~~~~~~~~~~~~~~~~~-~-~------~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~ 74 (350)
T TIGR03537 3 FDFGTGDPKEPTPPFIRKALIDAVP-E-V------SQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIF 74 (350)
T ss_pred EeccCCCCCCCCCHHHHHHHHHHHh-c-c------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHH
Confidence 3444444322 4447777766542 1 1 12444555678999888888877674 3 3 5666757788999
Q ss_pred HHHHHccCCC---CEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 104 AVFFSVLNPG---DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 104 ~al~al~~pG---D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
.++.+++++| |+|+++.+.++. ....+...|. ++++++.+ +++.+|++++++++.+ +++++++++++||
T Consensus 75 ~~~~~~~~~g~~~d~Vl~~~p~y~~---~~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~NP 148 (350)
T TIGR03537 75 HFPLVFIDPEEDRRRVIFGTPGYPV---YERGALFAGG--EPTAVKLKKEDGFLLRLEKVEKSILE-ETKIVWINYPHNP 148 (350)
T ss_pred HHHHHHcCCCCCCceEEEcCCCCcc---hHHHHHhcCC--EEEEcccCcccCCccCHHHHHHhhhh-ccEEEEEeCCCCC
Confidence 9999999887 699977755544 4444566777 45555554 4567899999998876 4667666666666
Q ss_pred -c-ccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--C-CCcEEEecCCccCCCCCe---eEEEEechhHH
Q psy13354 179 -Q-YID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--P-FADFITSTTHKSLRGPRG---GFILMKKKYKK 247 (1342)
Q Consensus 179 -~-~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~-~~Divv~S~sK~l~gp~G---G~iv~~~~l~~ 247 (1342)
+ ..+ +++|+++|++||++||+||+|....+. +...+.. + ...+++.|+||++ |.+| ||+++++++.+
T Consensus 149 tG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~i~~~s~SK~~-g~~GlRiG~~~~~~~~~~ 226 (350)
T TIGR03537 149 TGATAPRSYLKETIAMCREHGIILCSDECYTEIYFG-EPPHSALEVGIENVLAFHSLSKRS-GMTGYRSGFVAGDEKLIS 226 (350)
T ss_pred cCcccCHHHHHHHHHHHHHcCcEEEEeccccccccC-CCCCchhhcCcCCEEEEeeccccc-CCccccceeeecCHHHHH
Confidence 2 223 899999999999999999998754332 1111111 1 1247888999999 5556 99999988888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCH
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
.+......+..+.+ ...+.++..++. . ..+.++.++++.++++.+.+.|.+.|+.+. .+.+++++|++++....+.
T Consensus 227 ~~~~~~~~~~~~~~-~~~q~~~~~~l~-~-~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~-~~~g~~~~~~~~~~~~~~~ 302 (350)
T TIGR03537 227 FLRKLRANFGVASP-DFVQAAAKAAWS-D-DNHVLERRKIFKRKRDLFIEFFNKVGLEYL-YPDATFYLWVKVPSGIDAK 302 (350)
T ss_pred HHHHHHHhhccCCC-HHHHHHHHHHhC-C-cHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CCCeEEEEEEECCCCCCHH
Confidence 88765444433332 233343333332 1 236677788899999999999999888754 3556788999998654456
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+++..+++ +||.+.++..++... .+++|++++
T Consensus 303 ~l~~~L~~-~gv~v~~g~~f~~~~----~~~~Ri~~~ 334 (350)
T TIGR03537 303 DYALRLLE-NGIVVAPGENFGSGE----EGYVRVALV 334 (350)
T ss_pred HHHHHHHH-CCEEEcCchhhCCCC----CCEEEEEec
Confidence 67777665 699999876654322 357999875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=208.39 Aligned_cols=315 Identities=15% Similarity=0.124 Sum_probs=201.6
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
...|.+..+++.++ +.+.+++.+.+..... ..|....+..++++ .+++++|.+ ..+++++|+++|+.
T Consensus 28 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~------~~y~~~~g~~~lr~----~ia~~l~~~~~~v~~~~g~t~al~ 97 (380)
T PRK06225 28 KEMIWMGQNTNHLGPHEEVREAMIRCIEEGEY------CKYPPPEGFPELRE----LILKDLGLDDDEALITAGATESLY 97 (380)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCC------CCCCCCcchHHHHH----HHHHhcCCCCCcEEEeCCHHHHHH
Confidence 45677877776543 4488888877743211 12333444556666 788888876 44555659999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c--
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q-- 179 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~-- 179 (1342)
.++.+++.+||+|+++.+.+ ......+...|..+..+++..+ .++.+|++.+++.+.+. ++++++++++|| +
T Consensus 98 ~~~~~~~~~gd~vl~~~p~y---~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NptG~~ 173 (380)
T PRK06225 98 LVMRAFLSPGDNAVTPDPGY---LIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDEN-TRLIYLIDPLNPLGSS 173 (380)
T ss_pred HHHHHhcCCCCEEEEcCCCC---cchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCC-ceEEEEeCCCCCCCcC
Confidence 99999999999999766444 3334445666774444433222 25689999999988754 556555555555 2
Q ss_pred --ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC-CC-CCCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhc
Q psy13354 180 --YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP-NP-VPFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSA 252 (1342)
Q Consensus 180 --~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~-~~-l~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~ 252 (1342)
..++++|+++|++||+++|+|++|..... +... .. .....+++.||||++ |+.| ||+++++++++.+...
T Consensus 174 ~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RiG~i~~~~~l~~~~~~~ 250 (380)
T PRK06225 174 YTEEEIKEFAEIARDNDAFLLHDCTYRDFAR--EHTLAAEYAPEHTVTSYSFSKIF-GMAGLRIGAVVATPDLIEVVKSI 250 (380)
T ss_pred CCHHHHHHHHHHHHHCCcEEEEehhHHHHhc--cCCchhhcCCCCEEEEeechhhc-CCccceeEEEecCHHHHHHHHHH
Confidence 23699999999999999999999853221 1111 01 112357888999999 7666 9999999988887764
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCC-CHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKI-TGKIA 330 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~-~~~~~ 330 (1342)
.. ...+ .+...+.++..++.. ...+.+...+.+.++++.+.+.|++. |+.+...+..++++|+.++.... +.++.
T Consensus 251 ~~-~~~~-~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 327 (380)
T PRK06225 251 VI-NDLG-TNVIAQEAAIAGLKV-KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAGIDPEDLV 327 (380)
T ss_pred Hh-cccC-CCHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccccCCHHHHH
Confidence 22 1222 233344443333332 23355666666777888888888873 54332234567788998865433 34555
Q ss_pred HHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 331 ESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 331 ~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
..+. ++||.+.++..+... ++.+++|++++.
T Consensus 328 ~~l~-~~gi~v~~g~~~~~~---~~~~~iR~s~~~ 358 (380)
T PRK06225 328 EYLL-ERKIFVRQGTYTSKR---FGDRYIRVSFSI 358 (380)
T ss_pred HHHH-HCCEEEcCCcccCcC---CCCceEEEEeCC
Confidence 5555 669999886543221 124679999865
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-18 Score=208.79 Aligned_cols=320 Identities=15% Similarity=0.083 Sum_probs=207.9
Q ss_pred cCceeeeecCC-----C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCC
Q psy13354 27 NNNIELIASEN-----Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHS 97 (1342)
Q Consensus 27 ~~~i~l~a~~n-----~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~s 97 (1342)
.+.+.+..+.. + .++.+.+++.+.+..... ..|+...+..++++++++.+....+. + +.+++++|
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~------~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G 104 (403)
T TIGR01265 31 KPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKF------NGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSG 104 (403)
T ss_pred CCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecC
Confidence 46688877753 2 344588887776643221 12334455556777555444433232 1 44556658
Q ss_pred HHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 98 GSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 98 Gs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
|++|+..++.+++.+||+|+++.+.++. ........|..+..++++.++++.+|++.+++.+.+.+..+++.+++|+
T Consensus 105 ~t~al~~~~~~l~~~gd~Vlv~~p~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NP 181 (403)
T TIGR01265 105 CSQAIEICIEALANPGANILVPRPGFPL---YDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNP 181 (403)
T ss_pred hHHHHHHHHHHhCCCCCEEEEeCCCchh---HHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCC
Confidence 8999999999999999999987765543 3344566677555444433456789999999988765444555444443
Q ss_pred Cccc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC---C-CcEEEecCCccCCCCCe---eEEEEec--h
Q psy13354 178 SQYI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP---F-ADFITSTTHKSLRGPRG---GFILMKK--K 244 (1342)
Q Consensus 178 ~~~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~---~-~Divv~S~sK~l~gp~G---G~iv~~~--~ 244 (1342)
++.. ++++|+++|+++|++||+|++|....+....+.+... . .-++++||||.| +.+| ||+++++ +
T Consensus 182 tG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~~~~~ 260 (403)
T TIGR01265 182 CGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRW-VVPGWRLGWIIIHDPHG 260 (403)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeeccccc-CCCcceEEEEEEeCchh
Confidence 3222 5899999999999999999998765443222222111 1 237789999998 5556 9999852 2
Q ss_pred -----hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEE
Q psy13354 245 -----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILV 318 (1342)
Q Consensus 245 -----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i 318 (1342)
+.+.+...... ..+++...+.++..++.+....++++.++++.++++++.+.|+.. |+.+. .+.+++++|+
T Consensus 261 ~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~~g~f~~~ 337 (403)
T TIGR01265 261 IFRDTVLQGLKNLLQR--ILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCP-KPEGAMYLMV 337 (403)
T ss_pred hhHHHHHHHHHHHhhh--hcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-CCCceeEEEE
Confidence 33444332211 122344556665555544333467778889999999999999886 66543 4677899999
Q ss_pred EccCCC-----CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 319 DLRNKK-----ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 319 ~~~~~~-----~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.++... .+.+++..+++++||.+.++..++. .+++|++++.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~------~~~iRis~~~ 383 (403)
T TIGR01265 338 KLELELFPEIKDDVDFCEKLVREESVICLPGSAFGL------PNWVRITITV 383 (403)
T ss_pred eccccccCCCCCHHHHHHHHHHhCCEEEeCccccCC------CCeEEEEecC
Confidence 987531 3567778888888999998876642 3579999885
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-19 Score=213.68 Aligned_cols=320 Identities=15% Similarity=0.049 Sum_probs=209.3
Q ss_pred CceeeeecCC-----CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHH
Q psy13354 28 NNIELIASEN-----YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGS 99 (1342)
Q Consensus 28 ~~i~l~a~~n-----~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs 99 (1342)
..+.+..++. .+|+.+.+++.+.+.+. ....|+...+..++++++.+++.+.+|.+ +.+++++|++
T Consensus 33 ~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~------~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~ 106 (433)
T PRK06855 33 KITWENIGDPIAKGEKIPDWMKEIVAELVMDD------KSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLG 106 (433)
T ss_pred cccccccCCCcccCCCCCHHHHHHHHHHhhcC------CCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHH
Confidence 3455655554 34445777877665321 11235555667789998888888776643 3455555888
Q ss_pred HHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhc-CCeEEEEcCCC
Q psy13354 100 QANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKN-KPKLIIAGASA 176 (1342)
Q Consensus 100 ~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~-~~~liv~~~s~ 176 (1342)
+|+..++. ++.|||.|++..+.|+.+... .....|. ++++++.+ +++.+|++++++.++.. +++++++++++
T Consensus 107 ~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~--~~~~~g~--~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~ 181 (433)
T PRK06855 107 DAIAKIYG-LLRREARVIGPSPAYSTHSSA--EAAHAGY--PPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPD 181 (433)
T ss_pred HHHHHHHH-hcCCCCeEEEeCCCCchHHHH--HHHhcCC--eEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCC
Confidence 89988885 789999999888777653211 1122344 55555554 45679999999998743 44555555666
Q ss_pred CC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---C-CCcEEEecCCccCCCCCe---eEEEEec-
Q psy13354 177 YS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---P-FADFITSTTHKSLRGPRG---GFILMKK- 243 (1342)
Q Consensus 177 ~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---~-~~Divv~S~sK~l~gp~G---G~iv~~~- 243 (1342)
|| +...+++|+++|++||++||+||+|....+....+++.. . ...++++||||.+ +.+| ||+++++
T Consensus 182 NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~-~~pGlRiG~ii~p~~ 260 (433)
T PRK06855 182 NPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKEL-PWPGSRCGWIEVYNA 260 (433)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCcccc-CCCcceEEEEEEeCC
Confidence 66 333688999999999999999999986554322222211 1 1248899999999 6556 9999842
Q ss_pred -------hhHHHHhhccCCccccCCcHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCe
Q psy13354 244 -------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-LKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSH 314 (1342)
Q Consensus 244 -------~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~ 314 (1342)
.+++.+..... ...+++.+.+.++..++.+. ...++++.++.+.++++.+.+.|.+. |+.+ ..+.+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~-~~p~gg~ 337 (433)
T PRK06855 261 DKDEVFKKYINSILNAKM--IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKV-NRTNGAF 337 (433)
T ss_pred chhhHHHHHHHHHHHhhc--cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeec-cCCCeeE
Confidence 22333322211 12234456666655555332 13467778888999999999999875 6554 3466789
Q ss_pred EEEEEccCCC---------------------------CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 315 IILVDLRNKK---------------------------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 315 ~v~i~~~~~~---------------------------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
++|+++++.. .+.+++..+++++||.+.|+..++... .++|++++...
T Consensus 338 ~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~-----~~~Rls~~~~~ 412 (433)
T PRK06855 338 YMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTEL-----NGFRVTLLERD 412 (433)
T ss_pred EEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCC-----CceEEEECCCc
Confidence 9999997531 245677788888899999987765322 35999998743
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=209.96 Aligned_cols=318 Identities=14% Similarity=0.130 Sum_probs=210.8
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---C-ceEecCCHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---A-ANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~-~vi~~~sGs~ 100 (1342)
.+.+.+..+... .++.+.+++.+.+.+. ....|....+..++++++++++.+.+|.. + .+++++|+++
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~ 102 (395)
T PRK08175 29 EDIIDFSMGNPDGPTPPHIVEKLCEVAQRP------DTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKE 102 (395)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhCC------CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHH
Confidence 445666655422 2333666665555321 11235556667799998888888776643 3 4666657778
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCCC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAYS 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~~ 178 (1342)
++..++.+++.|||+|+++.+.++.+ .......|. +++.++.++++ .+.++++++++.. +++++++++++||
T Consensus 103 ~l~~~~~~~~~~gd~Vlv~~P~y~~~---~~~~~~~g~--~~~~v~~~~~~-~~~~~l~~~l~~~~~~~~~v~i~~p~NP 176 (395)
T PRK08175 103 GLAHLMLATLDHGDTVLVPNPSYPIH---IYGAVIAGA--QVRSVPLVEGV-DFFNELERAIRESYPKPKMMILGFPSNP 176 (395)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcch---HHHHHHcCC--eEEEEecccCC-CcHHHHHHHHhhccCCceEEEEeCCCCC
Confidence 99999999999999999877665543 333345566 44555555332 2578888887753 4677777665666
Q ss_pred -c-c---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--C---CCcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 -Q-Y---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--P---FADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 -~-~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~---~~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
+ . ..+++|+++|++||++||+|++|....+......+.. . ...++++||||.| |.+| ||+++++++
T Consensus 177 tG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~pGlRiG~~~~~~~l 255 (395)
T PRK08175 177 TAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSY-NMAGWRIGFMVGNPEL 255 (395)
T ss_pred CCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccc-cCcchhheeeeCCHHH
Confidence 2 2 2468999999999999999999976544222212111 1 1236789999999 6666 999999999
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC-
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK- 324 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~- 324 (1342)
++.+.........+ +..+.+.++..++.. ...+++..++.+.++++++.+.|...|+.+. .+.+++++|++++...
T Consensus 256 ~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~p~~g~~i~i~l~~~~~ 332 (395)
T PRK08175 256 VSALARIKSYHDYG-TFTPLQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEAGWMVE-MPKASMYVWAKIPEPYA 332 (395)
T ss_pred HHHHHHHHhhcccC-CCcHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-CCCEEEEEEEECCcccC
Confidence 88877543222222 223444444444432 2346777888899999999999999887653 3567899999998643
Q ss_pred --CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 325 --ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 325 --~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.+.+++..+++++||.+.++..++..+ .+++|++++
T Consensus 333 ~~~~~~~~~~l~~~~gv~v~p~~~f~~~~----~~~lRis~~ 370 (395)
T PRK08175 333 AMGSLEFAKKLLNEAKVCVSPGIGFGDYG----DTHVRFALI 370 (395)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhCcCC----CCeEEEEeC
Confidence 245777788888899999876554322 357999886
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=210.37 Aligned_cols=318 Identities=20% Similarity=0.229 Sum_probs=207.0
Q ss_pred CceeeeecC--CC-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 28 NNIELIASE--NY-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~--n~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..+. ++ .+|.+.+++.+++. .+...... |....+..++.+++++++++++|.+..++++ +|++++..
T Consensus 34 ~~id~~~~~~~g~~~~~~~~~a~~~~~~-~~~~~~~~---~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~-sG~~a~~~ 108 (385)
T TIGR01825 34 EVINLSSNNYLGFADHPRLKEAAAQAIQ-QYGVGAGA---VRTIAGTLRLHEELEEKLAKFKKTEAALVFQ-SGFNTNQG 108 (385)
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHH-HcCCCCCc---cCcccCCcHHHHHHHHHHHHHhCCCcEEEEC-cHHHHHHH
Confidence 446666543 34 55668888888774 33222211 2222333477777888999999987766666 88999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc---CCeEEEEcCCCCC--c
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN---KPKLIIAGASAYS--Q 179 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~---~~~liv~~~s~~~--~ 179 (1342)
++.++++|||.|++....|+.+ ...+...|.. ...++ .+|++++++.+.+. +.+++++++..++ .
T Consensus 109 a~~~~~~~gd~vi~~~~~~~~~---~~~~~~~g~~--~~~~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~ 178 (385)
T TIGR01825 109 VLSALLRKGDIVLSDELNHASI---IDGLRLTKAT--KKIYK-----HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGD 178 (385)
T ss_pred HHHHhCCCCCEEEEEccccHHH---HHHHHhcCCc--eEEeC-----CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCC
Confidence 9999999999999776555433 3333445553 33222 36888888877653 3566666543333 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CC----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GE----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~ 254 (1342)
..++++|.++|++||+++|+||+|+.|.++. +. +.+.....+++++|+||++ |+.|||+++++++++.+.....
T Consensus 179 ~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~gG~~~~~~~~~~~~~~~~~ 257 (385)
T TIGR01825 179 VAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAI-GVVGGYAAGHKELIEYLKNRAR 257 (385)
T ss_pred ccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHh-hcCCCEEecCHHHHHHHHHhCc
Confidence 5589999999999999999999998765531 11 1111123588999999999 7778999999988888876444
Q ss_pred CccccCC-cHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 255 PGIQGGP-LMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 255 ~~~~~~~-~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
++..++. ..+.++++..++..... . .+..+++.++++++.+.|.+.|+++.. +..+++++.++....+.+++..+
T Consensus 258 ~~~~~~~~~~~~~~a~~~al~~~~~-~-~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~L 333 (385)
T TIGR01825 258 PFLFSTAQPPAVVAALAAAVDELQR-S-PELMERLWDNTRFFKAGLGKLGYDTGG--SETPITPVVIGDEKAAQEFSRRL 333 (385)
T ss_pred cccccCCCCHHHHHHHHHHHHHHhc-C-HHHHHHHHHHHHHHHHHHHHcCCCCCC--CCCCEEEEEECCHHHHHHHHHHH
Confidence 4444433 33444454444433322 2 246677888999999999988887643 23445665554322245677777
Q ss_pred HHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+++ ||.+.+..+|..+.+ ..++|++++..++.
T Consensus 334 ~~~-gi~v~~~~~~~~~~~---~~~iRi~~~~~~~~ 365 (385)
T TIGR01825 334 FDE-GIFAQSIVFPTVPRG---TARIRNIPTAEHTK 365 (385)
T ss_pred HHC-CcEEcccCCCCCCCC---CceEEEEEcCCCCH
Confidence 776 999876555543322 35799987766553
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.9e-19 Score=209.35 Aligned_cols=329 Identities=19% Similarity=0.222 Sum_probs=212.0
Q ss_pred ceeeeecC---CCCcHH----HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHH
Q psy13354 29 NIELIASE---NYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQA 101 (1342)
Q Consensus 29 ~i~l~a~~---n~l~~~----v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A 101 (1342)
.+.|.+++ |++++. +.+++.+++.. | ...|++..+..+|++ .+++++|.+++++++ +|+.|
T Consensus 13 ~~~l~~~~v~iDlltds~t~ams~~~~~a~~~----g---d~~Y~~~~g~~~Lee----aia~~~g~~~vv~t~-~Gt~A 80 (431)
T cd00617 13 VFLLRSEDVYIDLLTDSGTGAMSDYQWAAMML----G---DEAYAGSKSFYDLED----AVQDLFGFKHIIPTH-QGRGA 80 (431)
T ss_pred EEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHh----C---CCccCCCCCHHHHHH----HHHHHHCCCeEEEcC-CHHHH
Confidence 35555554 445554 44444455431 1 223667777778888 788889998877777 99999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--------CCCCCHHHHHHHHHhc---CCeEE
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--------KEKIDYKKVEYLAKKN---KPKLI 170 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--------~~~id~e~Le~~i~~~---~~~li 170 (1342)
+..++.++++|||+|+ ++ +.+.++...+...|.....++++... .|.+|++++++.+++. ++++|
T Consensus 81 l~la~~al~~pGD~V~-~~---~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I 156 (431)
T cd00617 81 ENILFSILLKPGRTVP-SN---MHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYI 156 (431)
T ss_pred HHHHHHHhCCCCCEEc-cC---CcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEE
Confidence 9999999999999874 33 33334445566777744444332111 2459999999999865 25666
Q ss_pred EEcCCCCC---ccc---CHHHHHHHHHHcCCEEEEEcccchhhhh------cCCCC-CC-------CCCCcEEEecCCcc
Q psy13354 171 IAGASAYS---QYI---DFERFYHIAKNINSYFMVDMAHYAGLIA------AGEYP-NP-------VPFADFITSTTHKS 230 (1342)
Q Consensus 171 v~~~s~~~---~~~---~l~~I~~la~~~gi~LIvDea~~~g~~~------~~~~~-~~-------l~~~Divv~S~sK~ 230 (1342)
+++.++|+ .+. ++++|.++|++||++||+|+++..+... .+... ++ ....|.+++|++|.
T Consensus 157 ~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~ 236 (431)
T cd00617 157 VLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKD 236 (431)
T ss_pred EEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecC
Confidence 66666664 222 5778899999999999999997654211 11111 11 23469999999999
Q ss_pred CCCCCeeEEEEec-hhHHHHhhcc---CCc-cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcE
Q psy13354 231 LRGPRGGFILMKK-KYKKIINSAV---FPG-IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIR 305 (1342)
Q Consensus 231 l~gp~GG~iv~~~-~l~~~l~~~~---~~~-~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~ 305 (1342)
..++.||++++++ ++++.++... ..+ .+++.......|++.++.+... .++.++..++++++.+.|.+.|++
T Consensus 237 ~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~---~~~l~~~~~~r~~l~~~L~~~G~~ 313 (431)
T cd00617 237 GLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVE---EDYLRHRVEQVRYLGDRLDEAGVP 313 (431)
T ss_pred CCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHCCCC
Confidence 8788899999997 5888887432 112 1233333344444445544322 233455566779999999999998
Q ss_pred EeeCCCCCeEEEEEccCCC--------CCHHHHHHHHHHCCceeeeccC---CCCCCC---ccc-ccccccccccccccc
Q psy13354 306 IVSGGTKSHIILVDLRNKK--------ITGKIAESILESANIICNKNSI---PNDPEK---PYF-TSGIRLGSSAITTRG 370 (1342)
Q Consensus 306 ~~~~~~~~~~v~i~~~~~~--------~~~~~~~~ll~~~GI~v~~~~~---p~~~~~---~~~-~~~lRi~~~~~~t~~ 370 (1342)
+.. |.++|++|++++... .+.+++..++++.||.+..... +..+.. ... -..+|+++. ++.
T Consensus 314 v~~-P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~p---rr~ 389 (431)
T cd00617 314 IVE-PAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIP---RRV 389 (431)
T ss_pred ccC-CCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEecc---ccc
Confidence 865 678899999987522 2567888999999999764211 222111 000 246888766 555
Q ss_pred cchhhHHHHH
Q psy13354 371 FSELEIIKVV 380 (1342)
Q Consensus 371 ~~e~d~~~~~ 380 (1342)
.+...+..++
T Consensus 390 ~t~~~~~~~~ 399 (431)
T cd00617 390 YTQDHMDYVA 399 (431)
T ss_pred cCHHHHHHHH
Confidence 5655554443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=210.26 Aligned_cols=317 Identities=15% Similarity=0.080 Sum_probs=208.5
Q ss_pred CceeeeecCC-----C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CC-CceEecCCH
Q psy13354 28 NNIELIASEN-----Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AE-AANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~n-----~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~-~~vi~~~sG 98 (1342)
+.+.|..++. + .++.+.+++.+.+..... ..|+...+..++++++++++... + .+ +.+++++|+
T Consensus 32 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~aia~~~~~~-~~~~~~~~i~~t~G~ 104 (401)
T TIGR01264 32 PMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKY------NGYAPTVGALSAREAIASYYHNP-DGPIEADDVVLCSGC 104 (401)
T ss_pred CeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCC------CCCCCCCCCHHHHHHHHHHHhhc-CCCCCHHHEEECcCh
Confidence 4477776653 2 344488887776642111 12444455567777566555542 2 22 445556588
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++|+..++.+++.+||+|+++.+.++ .........|..+..++++.++++.+|++.+++.+++. ++++++++++||
T Consensus 105 ~~al~~~~~~l~~~gd~v~i~~P~y~---~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~NP 180 (401)
T TIGR01264 105 SHAIEMCIAALANAGQNILVPRPGFP---LYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEK-TAALIVNNPSNP 180 (401)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCh---hHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccC-ceEEEEcCCCCC
Confidence 99999999999999999998775544 33445566777544444433446789999999888754 466666666666
Q ss_pred -c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC----CcEEEecCCccCCCCCe---eEEEEec---
Q psy13354 179 -Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF----ADFITSTTHKSLRGPRG---GFILMKK--- 243 (1342)
Q Consensus 179 -~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~----~Divv~S~sK~l~gp~G---G~iv~~~--- 243 (1342)
+ ..++++|+++|+++|++||+||+|....+....+.+.... ..++++||||.| +.+| ||+++++
T Consensus 181 tG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~iv~~~~~~ 259 (401)
T TIGR01264 181 CGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRW-LVPGWRLGWIIIHDRRG 259 (401)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccC-CCccceEEEEEecCcch
Confidence 2 2268999999999999999999987654422222211111 137789999998 6666 9999874
Q ss_pred ---hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEE
Q psy13354 244 ---KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVD 319 (1342)
Q Consensus 244 ---~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~ 319 (1342)
++++.+...... ..+++.+.+.++..++.+....++++.++.+.++++++.+.|.+. |+.+. .+.+++++|+.
T Consensus 260 ~~~~~~~~~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~-~p~~g~f~~~~ 336 (401)
T TIGR01264 260 ILRDIRDGLVKLSQR--ILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPV-MPSGAMYMMVG 336 (401)
T ss_pred hHHHHHHHHHHHhhc--cCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc-CCCeeeEEEEE
Confidence 344444432221 112234455555555544223477788899999999999999987 65542 35678999999
Q ss_pred ccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 320 LRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 320 ~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++.. ..+.+++..+++++||.+.++..++. .+++|++++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~------~~~iRis~~~ 381 (401)
T TIGR01264 337 IEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEY------PGFFRVVLTV 381 (401)
T ss_pred ecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCC------CCeEEEEEcC
Confidence 7531 23467778888788999998765542 3579999985
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.1e-19 Score=208.47 Aligned_cols=318 Identities=15% Similarity=0.176 Sum_probs=214.1
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc--
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL-- 110 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~-- 110 (1342)
++..++++.+++++.+.+...+ +.+++..+.......++.+.+++.+++++|.+ +.+++++|+++|+..++.++.
T Consensus 5 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~ 82 (353)
T TIGR03235 5 NATTPIDPAVAEAMLPWLLEEF--GNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARA 82 (353)
T ss_pred CCCCCCCHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHh
Confidence 4456788889999988875433 33433222212223345566888999999987 567777688889999988875
Q ss_pred --CCC-CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHH
Q psy13354 111 --NPG-DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 111 --~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~ 185 (1342)
.+| +.|++....++++...+..+...|. +++.++.++++.+|++++++.+++ ++++++++.++++ ...|+++
T Consensus 83 ~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~--~v~~v~~~~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~tG~~~~~~~ 159 (353)
T TIGR03235 83 GEQKGKKHIITSAIEHPAVLEPIRALERNGF--TVTYLPVDESGRIDVDELADAIRP-DTLLVSIMHVNNETGSIQPIRE 159 (353)
T ss_pred cccCCCCeeeEcccccHHHHHHHHHHHhcCC--EEEEEccCCCCcCCHHHHHHhCCC-CCEEEEEEcccCCceeccCHHH
Confidence 356 7788777777766555555555676 455556666788999999998875 4566665554444 5559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHH--Hhhcc------CCc
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKI--INSAV------FPG 256 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~--l~~~~------~~~ 256 (1342)
|.++|+++|+++++|++|+.|....+.. ...+|++++|+|||+ ||.| |+++.+++.... +.... ..+
T Consensus 160 I~~l~~~~~~~~ivD~a~~~g~~~~~~~---~~~~D~~~~s~~K~~-gp~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (353)
T TIGR03235 160 IAEVLEAHEAFFHVDAAQVVGKITVDLS---ADRIDLISCSGHKIY-GPKGIGALVIRKRGKPKAPLKPIMFGGGQERGL 235 (353)
T ss_pred HHHHHHHcCCEEEEEchhhcCCcccccc---ccCCCEEEeehhhcC-CCCceEEEEEccCcccccccCceeeCCCCcCcc
Confidence 9999999999999999999876622111 113799999999997 8988 999998864322 11100 112
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC--CeEEEEEccCCCCCHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK--SHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~--~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
..++++.+...++..++.... .+.+...+++.++++++++.|.+.|+++..++.. ..++.+.++ +.+.+.+...|
T Consensus 236 ~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~~v~~~L 312 (353)
T TIGR03235 236 RPGTLPVHLIVGMGEAAEIAR-RNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSID--GVNSEALIVNL 312 (353)
T ss_pred ccCCCChHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeC--CcCHHHHHHHH
Confidence 235566667777766665544 4777888999999999999998889987653222 234445444 33445666666
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++ +|.+.++........ ...++|.+++..
T Consensus 313 ~~-~i~v~~g~~~~~~~~--~~~~~l~~~g~~ 341 (353)
T TIGR03235 313 RA-DAAVSTGSACSSSKY--EPSHVLQAMGLD 341 (353)
T ss_pred hC-CeEEEchhhcCCCCC--CCCHHHHHcCCC
Confidence 66 899987654433221 134567766653
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-19 Score=215.36 Aligned_cols=284 Identities=12% Similarity=0.096 Sum_probs=194.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEE
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSIC 144 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~ 144 (1342)
|+...+..++.+.+.+++....+.++.+++++|+++|+..++.+++.|||.|++..+.|+ .....+...|. ++++
T Consensus 117 Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~---~~~~~~~~~g~--~~~~ 191 (431)
T PRK15481 117 YGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFL---SSINMLRYAGF--SASP 191 (431)
T ss_pred cCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcH---HHHHHHHHcCC--eEEe
Confidence 444455567777666665543343445666658888999999999999999997775554 44455566677 5555
Q ss_pred ecCCCCCCCCHHHHHHHHHhcCCeEEEEc-CCCCC--ccc---CHHHHHHHHHHc-CCEEEEEcccchhhhhcCCCCCCC
Q psy13354 145 YGLNKKEKIDYKKVEYLAKKNKPKLIIAG-ASAYS--QYI---DFERFYHIAKNI-NSYFMVDMAHYAGLIAAGEYPNPV 217 (1342)
Q Consensus 145 ~~~~~~~~id~e~Le~~i~~~~~~liv~~-~s~~~--~~~---~l~~I~~la~~~-gi~LIvDea~~~g~~~~~~~~~~l 217 (1342)
++.++++ +|++.+++++++ ++++++++ +++|| ... .+++|.++|++| +++||+||+|...... . +...+
T Consensus 192 v~~~~~g-~~~~~l~~~~~~-~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~-~-~~~~~ 267 (431)
T PRK15481 192 VSVDAEG-MQPEKLERALAQ-GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSS-P-YHSVI 267 (431)
T ss_pred eccCCCC-CCHHHHHHHHhc-CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccC-C-CCCCC
Confidence 5666554 899999998875 46666665 66777 222 456999999999 9999999998765331 1 12222
Q ss_pred C---CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc-cchHHHHHHHHHH
Q psy13354 218 P---FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-KPDFKIYQKQVVK 290 (1342)
Q Consensus 218 ~---~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-~~~~~~~~~~l~~ 290 (1342)
. ...++++||||.| | +| ||+++++++++.+......... +.+.+.+.++..++.+.. ..++++.++.+.+
T Consensus 268 ~~~~~~vi~~~SfSK~~-~-~GlRiG~~i~~~~~~~~~~~~~~~~~~-~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~ 344 (431)
T PRK15481 268 PQTTQRWALIRSVSKAL-G-PDLRLAFVASDSATSARLRLRLNSGTQ-WVSHLLQDLVYACLTDPEYQARLAQARLFYAQ 344 (431)
T ss_pred cCCCCCEEEEeeecccc-C-CCceeEEEeCCHHHHHHHHHHHhcccc-CCCHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 1 1348899999999 5 56 9999999888888653333222 233555565555554321 1246778899999
Q ss_pred HHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 291 NAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 291 ~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
+++.+.+.|.+.|+.+. .+.+++++|++++. .+.+++..++ ++||.+.++..++.... .+++|++++...
T Consensus 345 ~r~~~~~~L~~~~~~~~-~p~gg~f~~~~l~~--~~~~~~~~l~-~~gV~v~pg~~f~~~~~---~~~iRis~~~~~ 414 (431)
T PRK15481 345 RRQKLARALQQYGIAIP-SPGDGLNLWLPLDT--DSQATALTLA-KSGWLVREGEAFGVSAP---SHGLRITLSTLN 414 (431)
T ss_pred HHHHHHHHHHHcCCccc-cCCCeEEEEEECCC--CHHHHHHHHH-HCCcEEecCCccccCCC---CCeEEEEcCCCC
Confidence 99999999998887653 35788999999875 2456666655 56999998776644321 346999998753
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=209.76 Aligned_cols=317 Identities=15% Similarity=0.135 Sum_probs=209.2
Q ss_pred CceeeeecCC----C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHH
Q psy13354 28 NNIELIASEN----Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGS 99 (1342)
Q Consensus 28 ~~i~l~a~~n----~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs 99 (1342)
+.+.+..+.. + .++.+.+++.+.+... ...|+...+..++++++++++...+|.. +.+++++|++
T Consensus 31 ~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~-------~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~ 103 (398)
T PRK08363 31 KVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEG-------HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVT 103 (398)
T ss_pred CeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcC-------CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHH
Confidence 5588887764 2 4445888887766421 1134445666788887777776665632 4555665889
Q ss_pred HHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEe-cCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 100 QANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICY-GLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 100 ~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~-~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
+|+..++.+++++||+|+++.+.++.+ ...+...|. .++.+ +.+ +++.+|++.+++.+++ +++++++++++|
T Consensus 104 ~al~~~~~~~~~~gd~Vl~~~p~y~~~---~~~~~~~g~--~~v~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~N 177 (398)
T PRK08363 104 EALQLIFGALLDPGDEILIPGPSYPPY---TGLVKFYGG--VPVEYRTIEEEGWQPDIDDIRKKITE-KTKAIAVINPNN 177 (398)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcch---HHHHHHcCC--EEEEeccccccCCcCCHHHHHhhCCc-ceEEEEEECCCC
Confidence 999999999999999999877655544 334455565 44444 333 4567899999988865 345655556565
Q ss_pred C-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CCC--CcEEEecCCccCCCCCe---eEEEE--ec
Q psy13354 178 S-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VPF--ADFITSTTHKSLRGPRG---GFILM--KK 243 (1342)
Q Consensus 178 ~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~~--~Divv~S~sK~l~gp~G---G~iv~--~~ 243 (1342)
| +. .++++|+++|+++|++||+|++|....+. +..... +.. ..+++.||||++ +.+| ||+++ ++
T Consensus 178 PtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~~~~ 255 (398)
T PRK08363 178 PTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYE-GKHVSPGSLTKDVPVIVMNGLSKVY-FATGWRLGYIYFVDPE 255 (398)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccC-CcccCHHHcCcCCcEEEEecchhcc-CCccceEEEEEEeCcH
Confidence 5 22 24999999999999999999998764432 221111 111 246689999998 5556 99997 55
Q ss_pred hhHHHHhhccCCc--cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEc
Q psy13354 244 KYKKIINSAVFPG--IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 244 ~l~~~l~~~~~~~--~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~ 320 (1342)
++++.+....... ...+++.+.+.++..++.+ ..+++++.++++.++++++.+.|.+. ++.+. .+.+++++|+.+
T Consensus 256 ~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~g~~~~~~~l 333 (398)
T PRK08363 256 GKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGISTT-KPQGAFYIFPRI 333 (398)
T ss_pred HHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCEec-CCCeEEEEEEEe
Confidence 5555544321110 1112334455555545433 23477788899999999999999886 66653 356677888787
Q ss_pred cCC--CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 321 RNK--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 321 ~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.. ..+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 334 ~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~----~~~iRis~~~ 376 (398)
T PRK08363 334 EEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYG----AGHFRLVFLP 376 (398)
T ss_pred ccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCC----CCeEEEEecC
Confidence 652 2345677788888899999876554322 3579999864
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-18 Score=207.07 Aligned_cols=301 Identities=16% Similarity=0.095 Sum_probs=192.8
Q ss_pred CceeeeecC--CCCcHHHHHHHhHHHHhccccCCCCC-CccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 28 NNIELIASE--NYTSLAVMEAQGTLLTNKYAEGYPGK-RYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~--n~l~~~v~eal~~~l~~~~~~g~~~~-~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
..|++.+-. .++++++++|+.+... .+ +.+++ .+... .......+++++.+++++|.+++++++ ||++|+..
T Consensus 19 ~~~~~~~~~~~~p~~~~~~~a~~~~~~-~~--~~~~~~~~~~~-~~~~~~~~~l~~~lA~~~g~~~~~~~~-g~t~a~~~ 93 (387)
T PRK09331 19 EFINLDPIQRGGILTPEARKALIEYGD-GY--SVCDYCPGRLD-QIKKPPIADFHEDLAEFLGMDEARVTH-GAREGKFA 93 (387)
T ss_pred cccccChhhcCCCCCHHHHHHHHHHHh-cc--CCCcccccccc-cccChHHHHHHHHHHHHhCCCcEEEeC-CHHHHHHH
Confidence 345555543 6677779999887763 22 22211 11111 111223444666999999998776655 99999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc------CCeEEEEcCCCCC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN------KPKLIIAGASAYS 178 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~------~~~liv~~~s~~~ 178 (1342)
++.+++++||+|++.. .+|++....+...|..+..++.+.++++.+|++++++.+++. .+++++++.++++
T Consensus 94 al~~l~~~gd~Vlv~~---~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~ 170 (387)
T PRK09331 94 VMHSLCKKGDYVVLDG---LAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGN 170 (387)
T ss_pred HHHHhcCCCCEEEECC---CchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCC
Confidence 9999999999999765 455555555667777444443322567889999999988753 4677776655543
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCC
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~ 255 (1342)
...|+++|+++|++||+++++|++|+.|.+.... ....+|++++|+||+++++.| |++++++++++.+.....+
T Consensus 171 tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~---~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~ 247 (387)
T PRK09331 171 YGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDG---KKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRK 247 (387)
T ss_pred CcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCH---HHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccCC
Confidence 5569999999999999999999999987542110 001369999999999977666 9999999888877554322
Q ss_pred cc------ccCCc-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-CCCCeEEEEEccCC---
Q psy13354 256 GI------QGGPL-MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSG-GTKSHIILVDLRNK--- 323 (1342)
Q Consensus 256 ~~------~~~~~-~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-~~~~~~v~i~~~~~--- 323 (1342)
+. +++.. .....++.+++..... ..+ ..++..++++++++.|.+. |++++.. +...+++.++.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~aal~~~~~-~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~ 325 (387)
T PRK09331 248 FGVKEVELLGCTLRGAPLVTLMASFPHVVE-RVK-RWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEI 325 (387)
T ss_pred CcccceeeeceecCchHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHH
Confidence 21 22111 1122323333332221 222 3556678888999999998 8988642 23355666665421
Q ss_pred ----CCCHHHHHHHHHHCCcee
Q psy13354 324 ----KITGKIAESILESANIIC 341 (1342)
Q Consensus 324 ----~~~~~~~~~ll~~~GI~v 341 (1342)
......+...|+++||.+
T Consensus 326 ~~~~~~~~~~~~~~L~~~gI~~ 347 (387)
T PRK09331 326 AKKHKRRGFFLYEELKKRGIHG 347 (387)
T ss_pred hhhccccchhHHHHHHHcCceE
Confidence 111123444445669973
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=207.52 Aligned_cols=323 Identities=14% Similarity=0.158 Sum_probs=216.2
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc--
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al-- 109 (1342)
.++..++++.+++++.+.+...+ +++.+..+.......++.+.+++.+++++|.+ +.+++++|||+|++.++.++
T Consensus 5 ~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~ 82 (364)
T PLN02651 5 MQATTPIDPRVLDAMLPFLIEHF--GNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMH 82 (364)
T ss_pred CcCCCCCCHHHHHHHHHHHHhCC--CCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 35567788889999888775433 33332111112233455666888999999987 56677768999988877654
Q ss_pred --cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC-CCCC-cccCHHH
Q psy13354 110 --LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA-SAYS-QYIDFER 185 (1342)
Q Consensus 110 --~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~-s~~~-~~~~l~~ 185 (1342)
.++||+|++....|++....+..+...|..+. .++.++++.+|++++++.++++ +++++++. ++.+ ...|+++
T Consensus 83 ~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~--~v~~~~~~~~d~~~l~~~i~~~-t~lv~v~~~~n~tG~~~~l~~ 159 (364)
T PLN02651 83 FYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVT--YLPVKSDGLVDLDELAAAIRPD-TALVSVMAVNNEIGVIQPVEE 159 (364)
T ss_pred hccCCCCEEEEcccccHHHHHHHHHHHhcCCEEE--EEccCCCCcCCHHHHHHhcCCC-cEEEEEECCCCCceecccHHH
Confidence 47899999888777665444544455566444 4455667889999999999764 45555544 4444 5559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC------Ccc
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------PGI 257 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------~~~ 257 (1342)
|.++|+++|+++++|++|+.|...-. ... .+|++++|.|||+ ||.| |+++.+++....+..... .+.
T Consensus 160 I~~~~~~~g~~~~vD~a~~~g~~~~~----~~~~~~D~~~~s~hK~~-gp~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~ 234 (364)
T PLN02651 160 IGELCREKKVLFHTDAAQAVGKIPVD----VDDLGVDLMSISGHKIY-GPKGVGALYVRRRPRVRLEPLMSGGGQERGRR 234 (364)
T ss_pred HHHHHHHcCCEEEEEcchhhCCcccC----cccCCCCEEEechhhhC-CCCceEEEEEcCCCCCCCCccccCCCccCCcc
Confidence 99999999999999999998765211 111 3799999999985 9998 999998865544433211 234
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCC-C---CeEEEEEccCCCCCHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGT-K---SHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~-~---~~~v~i~~~~~~~~~~~~~ 331 (1342)
.++++.+...++..++..... ..+...++..+.++++.+.|.+. |+++..+.. . .+++.+.+++ .+.+.+.
T Consensus 235 ~GT~~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~--~~~~~~~ 311 (364)
T PLN02651 235 SGTENTPLVVGLGAACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAY--VEGESLL 311 (364)
T ss_pred CCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCC--CCHHHHH
Confidence 567777788887777666554 56778889999999999999863 788776311 1 2366666653 2334444
Q ss_pred HHHHHCCceeeecc--CCCC----------CCC-cccccccccccccccccc
Q psy13354 332 SILESANIICNKNS--IPND----------PEK-PYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~--~p~~----------~~~-~~~~~~lRi~~~~~~t~~ 370 (1342)
..|.+ |.++.+. .+.. ... ....+.+|+|++.++|.+
T Consensus 312 ~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~ 361 (364)
T PLN02651 312 MGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEE 361 (364)
T ss_pred HHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHH
Confidence 44443 7776432 1110 000 001257999999998853
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.2e-19 Score=205.89 Aligned_cols=302 Identities=15% Similarity=0.195 Sum_probs=211.7
Q ss_pred CceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC-CC-CceEecCCHHHHHH
Q psy13354 28 NNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN-AE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g-~~-~~vi~~~sGs~A~~ 103 (1342)
..+.+.+|+|+++|+ +.+++...+. .+ .-||.. ...++++ .+++++| .+ +.++..+|+.+.+.
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~-~~-~rYPd~-------~~~~l~~----a~a~~~~~~~~~~V~~gnGsde~i~ 89 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALD-KL-NRYPDP-------DYRELRA----ALAEYYGVVDPENVLVGNGSDELIE 89 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHH-hh-ccCCCC-------cHHHHHH----HHHHHhCCCCcceEEEcCChHHHHH
Confidence 468899999998864 7777666553 11 122221 2234444 8888999 66 34444545566889
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++++++.|||.|+++.+.++.+ .......|. +++.++..+ |.+|++.+.+.+.+ +++++++|+|||| ...
T Consensus 90 ~l~~~~~~~gd~vl~~~Ptf~~Y---~~~a~~~g~--~~~~v~~~~-~~~d~~~~~~~~~~-~~~lv~i~nPNNPTG~~~ 162 (356)
T COG0079 90 LLVRAFVEPGDTVLIPEPTFSMY---EIAAQLAGA--EVVKVPLKE-FRLDLDAILAAIRD-KTKLVFLCNPNNPTGTLL 162 (356)
T ss_pred HHHHHhhcCCCEEEEcCCChHHH---HHHHHhcCC--eEEEecccc-cccCHHHHHHhhhc-CCCEEEEeCCCCCCCCCC
Confidence 99999999999999877655544 444566677 555556666 88999999999887 7888888888888 333
Q ss_pred CHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC-CC-cEEEecCCccCCCCCe---eEEEEechhHHHHhhccC
Q psy13354 182 DFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP-FA-DFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 182 ~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~-~~-Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~ 254 (1342)
+.++|.++++.. +.+||+||||....- ......+. .. -+++.||||.| |..| ||+++++++++.+++...
T Consensus 163 ~~~~l~~l~~~~~~~~~vVvDEAY~eF~~--~~~~~l~~~~~nlivlRTfSKa~-gLAGlRlGy~ia~~~~i~~l~~vr~ 239 (356)
T COG0079 163 PREELRALLEALPEGGLVVIDEAYIEFSP--ESSLELLKYPPNLIVLRTFSKAF-GLAGLRVGYAIANPELIAALNKVRP 239 (356)
T ss_pred CHHHHHHHHHhCCCCcEEEEeCchhhcCC--chhhhhccCCCCEEEEEecHHhh-hcchhceeeccCCHHHHHHHHHhcC
Confidence 666666666644 889999999865332 11111111 12 37889999999 8888 999999999999999888
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcE-EeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIR-IVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~-~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
+|..++ +.+.++.+++.+. +++++.++.+.+.+.++.+.|...|+. +. ++.++|++++++... +..+.+.+
T Consensus 240 p~~v~~---~a~~aa~aal~~~--~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~--pS~aNFvlv~~~~~~-~~~l~~~L 311 (356)
T COG0079 240 PFNVSS---PALAAAIAALRDA--DYLEESVERIREERERLYAALKALGLFGVF--PSQANFVLVRVPDAE-AAALAEAL 311 (356)
T ss_pred CCCCCH---HHHHHHHHHcccH--HHHHHHHHHHHHHHHHHHHHHHhCCCCeec--CCCCcEEEEECCCcc-HHHHHHHH
Confidence 887664 3444444444333 578889999999999999999998844 43 456899999998732 33455555
Q ss_pred HHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++ +||.++.+...+. ..+++|+++...
T Consensus 312 ~~-~giivR~~~~~~~-----~~~~lRitvgt~ 338 (356)
T COG0079 312 LK-KGILVRDCSSVGL-----LPGYLRITVGTP 338 (356)
T ss_pred HH-CCEEEEeCCCCCC-----CCCeEEEEeCCH
Confidence 55 5999998744221 145799988774
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=209.04 Aligned_cols=325 Identities=15% Similarity=0.169 Sum_probs=215.7
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHH---
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFS--- 108 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~a--- 108 (1342)
++..+.+..+++++.+.+...+ +.+.+..+.......+..+.+++.+++++|.+ +.+++++|+|+++..++.+
T Consensus 39 a~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~ 116 (424)
T PLN02855 39 AATSQKPAAVLDALQDYYEEYN--SNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGL 116 (424)
T ss_pred ccccCCCHHHHHHHHHHHHhcC--CCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhh
Confidence 4446677779999888775332 22212111111222234456888999999984 4677777999999998876
Q ss_pred -ccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 109 -VLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 109 -l~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
.+++||+|+++..+|++.+..+. .....|..+.. ++.+.++.+|++++++.+++ ++++++++.++++ ...|++
T Consensus 117 ~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~--v~~~~~~~~~~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~~~ 193 (424)
T PLN02855 117 ANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKF--VGLTPDEVLDVEQLKELLSE-KTKLVATHHVSNVLGSILPVE 193 (424)
T ss_pred hcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEE--EecCCCCCcCHHHHHHHhcc-CceEEEEeCccccccccCCHH
Confidence 36899999988877765544333 34566774444 45555566899999999976 5566666554444 555999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--------- 253 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--------- 253 (1342)
+|+++|+++|+++++|++|+.|... .+... .+|++++|+||.+ ||.| |++++++++++.+....
T Consensus 194 ~I~~l~~~~g~~vivD~a~~~g~~~----~~~~~~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~ 268 (424)
T PLN02855 194 DIVHWAHAVGAKVLVDACQSVPHMP----VDVQTLGADFLVASSHKMC-GPTGIGFLWGKSDLLESMPPFLGGGEMISDV 268 (424)
T ss_pred HHHHHHHHcCCEEEEEhhhhcCCcC----CCchhcCCCEEEeeccccc-CCCccEEEEEchhhhhcCCCEecCCCceeee
Confidence 9999999999999999999776441 11111 2699999999965 8988 99999998776654321
Q ss_pred -----------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC-----CCeEE
Q psy13354 254 -----------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT-----KSHII 316 (1342)
Q Consensus 254 -----------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~-----~~~~v 316 (1342)
..+..|+++.+..+++..++..+...+++.+.++..+.++++++.|.+. |++++.+.. ..+++
T Consensus 269 ~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v 348 (424)
T PLN02855 269 FLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALC 348 (424)
T ss_pred ecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEE
Confidence 1123355666667777777665555578888899999999999999886 788765321 23566
Q ss_pred EEEccCCCCCHHHHHHHHHHCCceeeeccCCCC--CCCccccccccccccccccc
Q psy13354 317 LVDLRNKKITGKIAESILESANIICNKNSIPND--PEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 317 ~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~--~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+.+++. ...++...|.+++||.++.+..-.. ....-..+.+|+|++.++|.
T Consensus 349 ~~~~~~~-~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~ 402 (424)
T PLN02855 349 AFNVEGI-HPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTK 402 (424)
T ss_pred EEEECCc-CHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCH
Confidence 6776542 2334555554445999986431100 00000024699999998875
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-18 Score=211.46 Aligned_cols=324 Identities=10% Similarity=0.050 Sum_probs=212.9
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~ 104 (1342)
+.|.+..+...+|..+++.+.+.+.+... .....|+...+..++++++++++.+..|.+ +.+++++|+++|+..
T Consensus 130 ~~i~~~~~~~~fp~~~i~~a~~~l~~~~~---~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~ 206 (534)
T PLN02231 130 SLLDKSETHGLFSADAIERAWQILDQIPG---RATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHM 206 (534)
T ss_pred ccCCCCCccccCCHHHHHHHHHHHHhcCC---ccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHH
Confidence 44666666677777777776665542211 112346777888899998888888766643 445555588889999
Q ss_pred HHHHcc-CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhc-----CCeEEEEcCCC
Q psy13354 105 VFFSVL-NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKN-----KPKLIIAGASA 176 (1342)
Q Consensus 105 al~al~-~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~-----~~~liv~~~s~ 176 (1342)
++.+++ .+||.|+++.+.|+.+ ...+...|. ++++++++ ++|.+|++++++.+++. +++++++++++
T Consensus 207 ~~~~l~~~~gd~Vli~~P~Y~~y---~~~~~~~g~--~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~ 281 (534)
T PLN02231 207 MMQLLIRSEKDGILCPIPQYPLY---SASIALHGG--TLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPG 281 (534)
T ss_pred HHHHhccCCCCEEEEeCCCChhH---HHHHHHcCC--EEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCC
Confidence 999998 4899999887666544 444466676 45555555 35789999999988652 45666666666
Q ss_pred CC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-CCCCCC----------CC-CcEEEecCCccCCCCCe---
Q psy13354 177 YS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-EYPNPV----------PF-ADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 177 ~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~~~~~l----------~~-~Divv~S~sK~l~gp~G--- 236 (1342)
|| +...+++|+++|++||++||+||+|....+..+ .+.+.. .. .-++++|+||.+.|..|
T Consensus 282 NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRi 361 (534)
T PLN02231 282 NPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRG 361 (534)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccce
Confidence 66 333789999999999999999999987655322 222210 01 13667899997644444
Q ss_pred eEEEE---echhHHHHhhccCCccccCCcHHHHHHHHHHHHH------hcc---chHHHHHHHHHHHHHHHHHHHHhC-C
Q psy13354 237 GFILM---KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE------VLK---PDFKIYQKQVVKNAKILSKILDQR-G 303 (1342)
Q Consensus 237 G~iv~---~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~------~l~---~~~~~~~~~l~~~a~~l~~~L~~~-g 303 (1342)
||+++ ++++++.+..... ...+++...+.++..++.. ... .+.+.+++.+.++++.+.+.|.+. |
T Consensus 362 Gy~~~~~~~~~l~~~l~k~~~--~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~g 439 (534)
T PLN02231 362 GYMEVTGFTSDVREQIYKVAS--VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEG 439 (534)
T ss_pred EEEEEecCCHHHHHHHHHHHh--hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99986 5678887765432 1223334455554444421 001 123345678899999999999886 7
Q ss_pred cEEeeCCCCCeEEEEEcc--CC----------CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 304 IRIVSGGTKSHIILVDLR--NK----------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 304 ~~~~~~~~~~~~v~i~~~--~~----------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.+. .+.+++++|.++. .. ..+..++..++++.||.+.|+..++...+ ..++|+++..
T Consensus 440 i~~~-~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g---~~~~Rit~~~ 509 (534)
T PLN02231 440 VTCN-KAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPG---TWHFRCTILP 509 (534)
T ss_pred ceec-CCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCC---CCeEEEEeCC
Confidence 7764 4677889995553 21 11223457788888999999877653222 3569998853
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=212.82 Aligned_cols=295 Identities=14% Similarity=0.090 Sum_probs=215.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCcee
Q psy13354 64 YYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWF 140 (1342)
Q Consensus 64 ~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~ 140 (1342)
+|+...+..+|.+.+.+++....|.. +.+++++|+.+|+..+++.+++|||+|++ +.+++......++..|.
T Consensus 127 ~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~v---E~PtY~~~~~~~~~~g~-- 201 (459)
T COG1167 127 QYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLV---EDPTYPGALQALEALGA-- 201 (459)
T ss_pred cCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEE---cCCCcHHHHHHHHHcCC--
Confidence 45566788899998888888555654 44566647777999999999999999995 44666666667777787
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCC-CC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC
Q psy13354 141 NSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASA-YS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP 214 (1342)
Q Consensus 141 ~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~-~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~ 214 (1342)
++++++.|++| +|+|.+++.+...+++++++.++. || +....++|+++|++||++||+|+.|+...+.....+
T Consensus 202 ~~~~vp~d~~G-~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~ 280 (459)
T COG1167 202 RVIPVPVDEDG-IDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPP 280 (459)
T ss_pred cEEecCCCCCC-CCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCC
Confidence 66666777666 899999999998889998887633 33 233578999999999999999999887655433222
Q ss_pred CCC--C--CCcEEEecCCccCCCCCe--eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHH-hccchHHHHHHH
Q psy13354 215 NPV--P--FADFITSTTHKSLRGPRG--GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE-VLKPDFKIYQKQ 287 (1342)
Q Consensus 215 ~~l--~--~~Divv~S~sK~l~gp~G--G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~-~l~~~~~~~~~~ 287 (1342)
+.. + ...++++||||++ +|.- ||+++++++++.+.........++ ....+.+++.-+.+ ....+++.++..
T Consensus 281 ~l~~ld~~~rViy~gSFSK~l-~PglRlG~vv~p~~~~~~~~~~k~~~~~~~-s~~~Q~~la~~l~~G~~~~hl~~lR~~ 358 (459)
T COG1167 281 PLKALDAPGRVIYLGSFSKTL-APGLRLGYVVAPPELIEKLLRLKQAADLGP-SSLSQAALAAFLLSGHYDRHLRRLRRE 358 (459)
T ss_pred ChHhhCCCCCEEEEeeehhhc-ccccceeeeeCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 1 1358899999999 4433 999999998888876544433333 34444555444442 124477888999
Q ss_pred HHHHHHHHHHHHHhCC--cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee-ccCCCCCCCcccccccccccc
Q psy13354 288 VVKNAKILSKILDQRG--IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK-NSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 288 l~~~a~~l~~~L~~~g--~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~-~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+.++++.+.+.|.+.. ......+.++.++|+.+++..++.+++..++++ ||.+.+ +..+..... ..+++|++++
T Consensus 359 y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~~~~~l~~~a~~~-gv~i~~~g~~f~~~~~--~~~~~Rl~~s 435 (459)
T COG1167 359 YARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGIDARELLAAALEK-GVVVTPLGSAFSADGD--PRNGLRLSFS 435 (459)
T ss_pred HHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCCCCHHHHHHHHHHC-CCEEEcCCccccCCCC--CCCeEEEEcC
Confidence 9999999999999864 223335677899999999987777788888776 888888 655554432 2457999999
Q ss_pred ccccc
Q psy13354 365 AITTR 369 (1342)
Q Consensus 365 ~~~t~ 369 (1342)
.....
T Consensus 436 ~~~~e 440 (459)
T COG1167 436 SPSEE 440 (459)
T ss_pred CCCHH
Confidence 87653
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-18 Score=202.97 Aligned_cols=305 Identities=15% Similarity=0.166 Sum_probs=202.0
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
..+.+..+++.+ |+.+.+++.+.+..... ..|.. ....++++ .++++++.+ +.+++++|+++++..
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~------~~y~~-~~~~~lr~----~ia~~~~~~~~~i~it~G~~~~l~~ 91 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQEIVKSSQV------NIYPD-PTAEKLRE----ELARYCSVVPTNIFVGNGSDEIIHL 91 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHHHHhhcCcc------cCCCC-ccHHHHHH----HHHHHhCCCcccEEEecCHHHHHHH
Confidence 346677777654 34588887766532111 11221 22344555 777788876 555666577779999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.++++|||+|+++.+.++. ........|. +++.++.++++.+|++.+++.+++.+++++++++++|| ...+
T Consensus 92 ~~~~l~~~gd~Vlv~~p~y~~---~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~ 166 (351)
T PRK14807 92 IMLAFINKGDVVIYPHPSFAM---YSVYSKIAGA--VEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIE 166 (351)
T ss_pred HHHHhcCCCCEEEEeCCChHH---HHHHHHHcCC--eEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCC
Confidence 999999999999987655443 3334456666 55666666678899999999987656777776676766 4448
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCcc
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~ 257 (1342)
.+++.++|++++.++|+||+|... . ......... ...++++||||.+ |.+| ||+++++++++.+......+.
T Consensus 167 ~~~l~~l~~~~~~~~ivDe~y~~~-~-~~~~~~~~~~~~~vi~~~S~SK~~-~~~GlRiG~~v~~~~~~~~~~~~~~~~~ 243 (351)
T PRK14807 167 REDIIKIIEKSRGIVVVDEAYFEF-Y-GNTIVDVINEFENLIVLRTLSKAF-GLAGLRVGYAVANENILKYLNLVKSPYN 243 (351)
T ss_pred HHHHHHHHHhCCCEEEEeCcchhh-c-ccchHHHhhhCCCEEEEecchHhc-ccchhceeeeecCHHHHHHHHHccCCCC
Confidence 999999999988999999998642 2 211111121 1358889999999 7677 999999999988876433322
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
.....+.++...+.. .++++..+.+.++++++.+.|.+. |+.+. +++++++|+.++. +.++... +.+
T Consensus 244 ---~~~~~q~~~~~~l~~---~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~--~~~~~~~~i~~~~---~~~~~~~-l~~ 311 (351)
T PRK14807 244 ---INSLSQVIALKVLRT---GVLKERVNYILNERERLIKELSKIPGIKVY--PSKTNFILVKFKD---ADYVYQG-LLE 311 (351)
T ss_pred ---cCHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCCCcEEC--cCCccEEEEEcCC---HHHHHHH-HHH
Confidence 224445544444432 255666677888888899999774 77653 3557788988863 3344444 445
Q ss_pred CCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+||.+.++.... .. .+++|++++...+
T Consensus 312 ~gV~v~~~~~~~--~~---~~~iRis~~~~~~ 338 (351)
T PRK14807 312 RGILVRDFSKVE--GL---EGALRITVSSCEA 338 (351)
T ss_pred CCEEEEECCCCC--CC---CCeEEEEcCCHHH
Confidence 699998653211 11 3579999886443
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-18 Score=204.86 Aligned_cols=322 Identities=19% Similarity=0.197 Sum_probs=209.3
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHccCCCCE
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVLNPGDT 115 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~~pGD~ 115 (1342)
+.|+.+++++.+.+.. +. +.++...|..........+.+++.+++++|.+ +.+++++|+++++..++.+++++||+
T Consensus 11 ~~p~~v~~a~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~ 88 (376)
T TIGR01977 11 PKPDEVYEAMADFYKN-YG-GSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDH 88 (376)
T ss_pred CCCHHHHHHHHHHHHh-cC-CCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCE
Confidence 3556799998887753 21 11111112111122244455777999999986 24666669999999999999999999
Q ss_pred EEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHH
Q psy13354 116 IMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKN 192 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~ 192 (1342)
|++....++++...+. .....|. +++.++.+.++.+|++++++.+++ ++++++++.++++ ...++++|.++|++
T Consensus 89 vl~~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~~~~-~~~~v~~~~~~n~tG~~~~~~~i~~l~~~ 165 (376)
T TIGR01977 89 VITTPMEHNSVARPLECLKEQIGV--EITIVKCDNEGLISPERIKRAIKT-NTKLIVVSHASNVTGTILPIEEIGELAQE 165 (376)
T ss_pred EEECcchhhHHHHHHHHHHHHcCc--EEEEEecCCCCCcCHHHHHHhcCC-CCeEEEEECCCCCccccCCHHHHHHHHHH
Confidence 9987766655433222 2344466 444556666788999999999865 4566666555544 55599999999999
Q ss_pred cCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechh-HHHHhhcc---------------CC
Q psy13354 193 INSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKY-KKIINSAV---------------FP 255 (1342)
Q Consensus 193 ~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l-~~~l~~~~---------------~~ 255 (1342)
+|+++|+|++|++|....+. ....+|++++|+|||++||.| |+++.+++. +..+.... ..
T Consensus 166 ~~~~livD~a~~~g~~~~~~---~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 242 (376)
T TIGR01977 166 NGIFFILDAAQTAGVIPIDM---TELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDR 242 (376)
T ss_pred cCCEEEEEhhhccCccCCCc---hhcCCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCccccccccccccchhh
Confidence 99999999999988662211 012379999999999988888 777666543 11111100 01
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-CCcEEeeCC---CCCeEEEEEccCCCCCHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-RGIRIVSGG---TKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~g~~~~~~~---~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
+..++++.+...++..++..+...+.+.+.++..++++++.+.|.+ .|+++..+. ...+++++.+++. +.+.+.
T Consensus 243 ~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~ 320 (376)
T TIGR01977 243 FESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI--DSEEVA 320 (376)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC--CHHHHH
Confidence 2235566677777777776666667788889999999999999986 457765421 1245677777532 344444
Q ss_pred HHHHH-CCceeeeccCCCCC----CCccccccccccccccccc
Q psy13354 332 SILES-ANIICNKNSIPNDP----EKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 332 ~ll~~-~GI~v~~~~~p~~~----~~~~~~~~lRi~~~~~~t~ 369 (1342)
..|.+ +||.+..+...... .+....+.+|++++..+|.
T Consensus 321 ~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~ 363 (376)
T TIGR01977 321 DILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTE 363 (376)
T ss_pred HHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCH
Confidence 44444 49999864321100 0011235799999887664
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=206.13 Aligned_cols=302 Identities=16% Similarity=0.126 Sum_probs=205.2
Q ss_pred CceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.|.|..|+|+.+ |.+++++.... .. ..|.. ....++++ .+++++|.+ +.+++++|+++++..
T Consensus 53 ~~i~l~~n~~p~~~~~~v~~a~~~~~---~~------~~Yp~-~~~~~lr~----~ia~~~~~~~~~I~~t~Ga~~~i~~ 118 (380)
T PLN03026 53 DIVKLDANENPYGPPPEVLEALGNMK---FP------YVYPD-PESRRLRA----ALAEDSGLESENILVGCGADELIDL 118 (380)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHhhH---hh------ccCCC-CCHHHHHH----HHHHHhCcChhhEEEcCCHHHHHHH
Confidence 5588888876643 34777764321 10 11221 22344555 788888876 556666577889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.+++.+||+|+++++.++. +.......|. +++.++.++++.+|++++++.+...+++++++++++|| ...+
T Consensus 119 ~~~~~~~~gd~Vlv~~P~y~~---y~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~ 193 (380)
T PLN03026 119 LMRCVLDPGDKIIDCPPTFGM---YVFDAAVNGA--EVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIIS 193 (380)
T ss_pred HHHHhcCCCCEEEEcCCChHH---HHHHHHHcCC--EEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCC
Confidence 999999999999987755543 3334455676 45555666678899999999885456777777777777 4448
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCcc
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~ 257 (1342)
.+++.++++.. ++||+||+|...... +......+ ...++++||||.+ |++| ||+++++++++.+.....++.
T Consensus 194 ~~~l~~l~~~~-~~vi~DeaY~~~~~~-~~~~~~~~~~~~viv~~SfSK~~-glaGlRiGy~~~~~~~i~~l~~~~~~~~ 270 (380)
T PLN03026 194 DDDLLKILELP-ILVVLDEAYIEFSTQ-ESRMKWVKKYDNLIVLRTFSKRA-GLAGLRVGYGAFPLSIIEYLWRAKQPYN 270 (380)
T ss_pred HHHHHHHHhcC-CEEEEECcchhhcCC-cchHHHHHhCCCEEEEecchHhh-cCccccceeeecCHHHHHHHHHhcCCCC
Confidence 99999999864 999999998653321 11111111 1358899999999 7788 999999999988876544433
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCc-EEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI-RIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~-~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
.+.+.+.++..++.+ . +++++.++.+.++++++.+.|++.++ .+ .+.+++++|+.++....+.++...++ +
T Consensus 271 ---~~~~~q~aa~~aL~~-~-~~~~~~~~~~~~~r~~l~~~L~~~~~~~~--~p~~~~f~~~~~~~~~~~~~~~~~l~-~ 342 (380)
T PLN03026 271 ---VSVAAEVAACAALSN-P-KYLEDVKNALVEERERLFGLLKEVPFLEP--YPSDANFILCRVTSGRDAKKLKEDLA-K 342 (380)
T ss_pred ---CCHHHHHHHHHHhhC-H-HHHHHHHHHHHHHHHHHHHHHHHCCCCeE--CCCCCeEEEEECCCCCCHHHHHHHHH-H
Confidence 234455555545432 2 46777888899999999999998764 43 35678899999875333456666666 5
Q ss_pred CCceeeeccCCCCCCCccccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+||.+.++..++ ..+++|++++.
T Consensus 343 ~gI~v~~~~~~~------~~~~lRis~~~ 365 (380)
T PLN03026 343 MGVMVRHYNSKE------LKGYIRVSVGK 365 (380)
T ss_pred CCeEEEECCCCC------CCCEEEEecCC
Confidence 699998753321 14579999884
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=204.90 Aligned_cols=303 Identities=15% Similarity=0.152 Sum_probs=204.0
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQ 103 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~ 103 (1342)
+.+.+..++|.+ ++.+++++.+.+......+|+ . .+..++++ .+++++|.+ ..+++++|+++++.
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~------~-~~~~~lr~----~ia~~~~~~~~~~I~~t~G~~~~i~ 95 (356)
T PRK04870 27 GMVKLDAMENPYRLPAELRAELGERLAEVALNRYP------D-PRAAALKA----ALRAAMGVPAGADVLLGNGSDELIQ 95 (356)
T ss_pred CceeCcCCCCCCCCCHHHHHHHHHHhhccccccCC------C-CCHHHHHH----HHHHHhCcCCCCcEEEcCCHHHHHH
Confidence 567788888764 444889988776421112222 2 22345555 777788865 25666656677999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++.+++++||+|+++.+ ++..........|. ++++++.++++.+|++.+++.+.+.+++++++++++|| ...
T Consensus 96 ~~~~~~~~~gd~vlv~~P---~y~~~~~~~~~~g~--~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~ 170 (356)
T PRK04870 96 LLALACAKPGATVLAPEP---GFVMYRMSAKLAGL--EFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLF 170 (356)
T ss_pred HHHHHhcCCCCEEEECCC---CHHHHHHHHHHcCC--EEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCC
Confidence 999999999999997664 44444555566777 56666777778899999999987667788887777777 333
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
+.+++.++++..++++|+||+|..... ......+.. ..+++.|+|| + +.+| ||+++++++++.+.....++
T Consensus 171 ~~~~~~~i~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~vi~~~S~SK-~-~~~GlRiG~~i~~~~~i~~~~~~~~~~ 246 (356)
T PRK04870 171 DDADVERIIEAAPGLVVVDEAYQPFAG--DSWLPRLARFPNLLVMRTVSK-L-GLAGLRLGYLAGHPAWIAELDKVRPPY 246 (356)
T ss_pred CHHHHHHHHHHCCCEEEEECCchhhcC--cchHHHHhhCCCEEEEecchh-h-hhHHHhhhhhhCCHHHHHHHHHccCCC
Confidence 677777776666889999999864321 111111111 2478999999 7 6767 99999999988887654333
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
. .+.+.+.++..++. .. +.+++..+++.++++++.+.|.+. |+.+. +.+++++|+.++ .+.+ +...++
T Consensus 247 ~---~~~~~q~~a~~~l~-~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~---~~~~-~~~~l~ 315 (356)
T PRK04870 247 N---VNVLTQATALFALE-HV-DVLDAQAAQLRAERTRLAAALAALPGVTVF--PSAANFILVRVP---DAAA-VFDGLK 315 (356)
T ss_pred c---CCHHHHHHHHHHHh-CH-HHHHHHHHHHHHHHHHHHHHHHhCCCcEEC--CCCCeEEEEECC---CHHH-HHHHHH
Confidence 2 22344444443333 22 256677888899999999999886 77652 456778999876 2334 445566
Q ss_pred HCCceeeeccCCCCCCCccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++||.+.+...++.. ..+++|++++.
T Consensus 316 ~~gI~v~~~~~f~~~----~~~~iRis~~~ 341 (356)
T PRK04870 316 TRGVLVKNLSGMHPL----LANCLRVTVGT 341 (356)
T ss_pred HCCEEEEECCCCCCC----CCCeEEEeCCC
Confidence 779999987554321 14679999885
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=207.84 Aligned_cols=284 Identities=17% Similarity=0.197 Sum_probs=200.8
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhC--CC-C-ceEecCCHHH-HHHHHHHHc-cCCCCEEEEeeccCCccchhhHHhhhCC
Q psy13354 64 YYGGCKFIDLIEKIAINRLKKIFN--AE-A-ANVQPHSGSQ-ANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSG 137 (1342)
Q Consensus 64 ~~~~~~~~~~Le~~~~~~la~~~g--~~-~-~vi~~~sGs~-A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g 137 (1342)
.|+...+..++++++++++.+..| .+ + .++++ +|+. ++..++..+ ..+||.|++..+.+ ......++..|
T Consensus 39 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~-~G~~~~~~~~~~~~~~~~~~~vlv~~P~y---~~~~~~~~~~g 114 (363)
T PF00155_consen 39 GYPPPQGYPELREAIADFLGRRYGVPVDPEANILVT-SGAQAALFLLLRLLKINPGDTVLVPDPCY---PSYIEAARLLG 114 (363)
T ss_dssp SSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEE-SHHHHHHHHHHHHHHSSTTSEEEEEESSS---THHHHHHHHTT
T ss_pred cCCCchhhHHHHHHHHHHhhhccCcccccceEEEEe-cccccchhhhhhcccccccccceecCCcc---ccccccccccC
Confidence 355566778888866555553333 22 3 56666 6655 555666666 67999999877544 44555667778
Q ss_pred ceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhh
Q psy13354 138 KWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGL 207 (1342)
Q Consensus 138 ~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~ 207 (1342)
..+..+++....++.+|++++++.+++. ++++++++++++| ...++++|+++|++||++||+||+|....
T Consensus 115 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~ 194 (363)
T PF00155_consen 115 AEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLI 194 (363)
T ss_dssp SEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGB
T ss_pred ceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccc
Confidence 8655665544577889999999999874 4567777777777 22256777777999999999999998766
Q ss_pred hhcCCCC---CCCC-CC-cEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc--
Q psy13354 208 IAAGEYP---NPVP-FA-DFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-- 277 (1342)
Q Consensus 208 ~~~~~~~---~~l~-~~-Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-- 277 (1342)
+....+. ...+ .. .+++.|+||.+ |..| ||+++++++++.+......+.. ..+.+.++...+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRvG~i~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 270 (363)
T PF00155_consen 195 FGDPDFGPIRSLLDEDDNVIVVGSLSKSF-GLPGLRVGYIVAPPELIERLRRFQRSGLS---SSPMQAAAAAALSDPELV 270 (363)
T ss_dssp SSSSHTHHHHGHHTTTSTEEEEEESTTTT-TSGGGTEEEEEEEHHHHHHHHHHHHHTTS---SHHHHHHHHHHHHHHHHH
T ss_pred cCCCccCcccccccccccceeeeeccccc-cccccccccccchhhhhhhhhhccccccc---cchhhHHHHHhhhccccc
Confidence 5432110 1111 12 48899999999 7777 9999999998888765444333 2444444444443332
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccc
Q psy13354 278 KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTS 357 (1342)
Q Consensus 278 ~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~ 357 (1342)
..+.++.++++.++++++.+.|.+.|+.+..+ .+++++|+.+... ++.++.+.++++.||.+.++..|+.+ +
T Consensus 271 ~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~L~~~~gi~v~pg~~~~~~------~ 342 (363)
T PF00155_consen 271 EKWLEELRERLRENRDLLREALEEIGITVLPP-EAGFFLWVRLDPN-DAEELAQELLEEYGILVRPGSYFGVP------G 342 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEHH-SBSSEEEEEESHH-HHHHHHHHHHHHHTEEEEEGGGGTST------T
T ss_pred ccccccchhhHHHHHHHHHHHHHHhhhheeec-cCccEEEEEcccc-hHHHHHHHHHHhCCEEEEecCCCCCC------C
Confidence 12778889999999999999999999998663 4778888887654 45688888888889999998887762 4
Q ss_pred cccccc
Q psy13354 358 GIRLGS 363 (1342)
Q Consensus 358 ~lRi~~ 363 (1342)
++|+++
T Consensus 343 ~iRi~~ 348 (363)
T PF00155_consen 343 YIRISL 348 (363)
T ss_dssp EEEEEG
T ss_pred EEEEEe
Confidence 699999
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-19 Score=207.40 Aligned_cols=291 Identities=17% Similarity=0.180 Sum_probs=184.0
Q ss_pred eeeeecCCCCcH-HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHH
Q psy13354 30 IELIASENYTSL-AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 30 i~l~a~~n~l~~-~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~a 108 (1342)
+.+.+++|+.++ .+.+++.+.... ...|++.+...+|++ .+++++|.+.+++++ ||++++..++.+
T Consensus 2 ~~~~~~~~~~p~~~~~~a~~~~~~~--------~~~Y~~~~~~~~L~~----~la~~~g~~~~~v~~-~g~~a~~~~l~~ 68 (333)
T PRK10534 2 IDLRSDTVTRPSRAMLEAMMAAPVG--------DDVYGDDPTVNALQD----YAAELSGKEAALFLP-TGTQANLVALLS 68 (333)
T ss_pred cccccccCCCCCHHHHHHHHhccCC--------CcccCCCHHHHHHHH----HHHHHhCCCeEEEeC-chHHHHHHHHHH
Confidence 456677766544 487886553321 122444555667777 888899998887777 899899988888
Q ss_pred ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCCcccC-
Q psy13354 109 VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYSQYID- 182 (1342)
Q Consensus 109 l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~~~~~- 182 (1342)
++.|||+|+++...+...+..... ...+ +...++++.+++|.+|+++++++++++ +++++++++++++...+
T Consensus 69 ~~~~gd~vi~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~G~v~~~ 146 (333)
T PRK10534 69 HCERGEEYIVGQAAHNYLYEAGGA-AVLG-SIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTHNGKVLPR 146 (333)
T ss_pred hcCCCCeeEEechhhhhHhcCCch-HHhc-CceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCCCCeecCH
Confidence 999999999655333211111101 1222 135566666778899999999988653 45777777666664444
Q ss_pred --HHHHHHHHHHcCCEEEEEcccchhhhhc-CCCC-CCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccc
Q psy13354 183 --FERFYHIAKNINSYFMVDMAHYAGLIAA-GEYP-NPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQ 258 (1342)
Q Consensus 183 --l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~-~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~ 258 (1342)
+++|+++|++||++|++||+|.++.... +... ......|.++.||||.++.+.|||+++++++++.++.....+..
T Consensus 147 ~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~~~i~~~~~~~~~~~~ 226 (333)
T PRK10534 147 EYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRARRWRKMTGG 226 (333)
T ss_pred HHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCcccceEEcCHHHHHHHHHHHHHhCC
Confidence 5666789999999999999986533211 1111 01112365666899999545566899999998888764433321
Q ss_pred cCCcH-HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHC
Q psy13354 259 GGPLM-HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESA 337 (1342)
Q Consensus 259 ~~~~~-~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~ 337 (1342)
+.... +.++++..++ + ...+..++..++++++.+.|.+.|+++.. +.++++|++++.. +.+.+.++|.++
T Consensus 227 ~~~~~~~~~a~~~~~l-~----~~~~~~~~~~~~r~~l~~~L~~~g~~~~~--~~~nfv~~~~~~~--~~~~~~~~l~~~ 297 (333)
T PRK10534 227 GMRQAGILAAAGLYAL-K----HNVARLQEDHDNAAWLAEQLREAGADVMR--QDTNMLFVRVGEE--QAAALGEYMRER 297 (333)
T ss_pred chhhHHHHHHHHHHHH-H----hhHHHHHHHHHHHHHHHHHHHhCCCccCC--CCceEEEEECCch--hHHHHHHHHHHc
Confidence 11111 1222222222 2 11234445566788999999999988643 4688999998742 234456677777
Q ss_pred Cceeeec
Q psy13354 338 NIICNKN 344 (1342)
Q Consensus 338 GI~v~~~ 344 (1342)
||.+.++
T Consensus 298 gi~v~~~ 304 (333)
T PRK10534 298 NVLINAS 304 (333)
T ss_pred CeeecCC
Confidence 9999753
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-18 Score=209.82 Aligned_cols=323 Identities=15% Similarity=0.118 Sum_probs=213.1
Q ss_pred ceeeeecCCCCcHH-HHHHHhHHHHh-----ccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC----C-CceEecCC
Q psy13354 29 NIELIASENYTSLA-VMEAQGTLLTN-----KYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA----E-AANVQPHS 97 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~-v~eal~~~l~~-----~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~----~-~~vi~~~s 97 (1342)
.|.+...||.+... +.+.+...... .+......-.+|....+...|++++++.+.+++|. + +.+++++|
T Consensus 49 ~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G 128 (447)
T PLN02607 49 VIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAG 128 (447)
T ss_pred eEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCC
Confidence 47888888887765 33333322210 00001111234555667789999899998887662 2 44556658
Q ss_pred HHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhh-hCCceeEEEEecCC--CCCCCCHHHHHHHHHh-----cCCeE
Q psy13354 98 GSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLN-MSGKWFNSICYGLN--KKEKIDYKKVEYLAKK-----NKPKL 169 (1342)
Q Consensus 98 Gs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~-~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~-----~~~~l 169 (1342)
+++|+..++.+++.|||.|+++.+.|+++.. .+. ..|+ ++++++.+ +++.+|++.+++++.+ .+.++
T Consensus 129 ~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~---~~~~~~g~--~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~ 203 (447)
T PLN02607 129 ATAANELLTFILADPGDALLVPTPYYPGFDR---DLRWRTGV--KIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRG 203 (447)
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCCcchHH---HHHhcCCc--EEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeE
Confidence 8889999999999999999988877766532 222 3455 55555554 4567899999998864 35566
Q ss_pred EEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-----------CCCcEEEecCCccCCC
Q psy13354 170 IIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-----------PFADFITSTTHKSLRG 233 (1342)
Q Consensus 170 iv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-----------~~~Divv~S~sK~l~g 233 (1342)
+++++|+|| ....+++|+++|++||++||+||+|+...+....+.+.. ...-+++.|+||.| |
T Consensus 204 lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~f-g 282 (447)
T PLN02607 204 VLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDL-G 282 (447)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcC-C
Confidence 667777777 233589999999999999999999986555332222211 11236788999999 6
Q ss_pred CCe---eEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 234 PRG---GFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE--VLKPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 234 p~G---G~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~--~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
..| ||+++ ++++...+.... .+ +..+++.+.+++..+.+ ....+++..++++.++++.+.+.|++.|+++.
T Consensus 283 ~~GlRvG~ivs~n~~l~~~~~~~~-~~--~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~ 359 (447)
T PLN02607 283 LPGFRVGTIYSYNDKVVTTARRMS-SF--TLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECL 359 (447)
T ss_pred CCcceEEEEEEcCHHHHHHHHHHh-hc--CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 667 99998 556766665432 11 12223444444333322 11224566778889999999999999888754
Q ss_pred eCCCCCeEEEEEccCCC-----C-CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNKK-----I-TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~~-----~-~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
. +.+++++|++++... . ..+++..+++++||.+.|+..++... ++++|++++.
T Consensus 360 ~-~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~----~g~fRi~fa~ 418 (447)
T PLN02607 360 K-GNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSE----PGWFRVCFAN 418 (447)
T ss_pred c-CCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCC----CCEEEEEecc
Confidence 3 567899999986421 1 13566678888899999876654432 4689999986
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=199.22 Aligned_cols=309 Identities=14% Similarity=0.108 Sum_probs=205.1
Q ss_pred eeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC---ceEecCCHHHHHHHHHHH
Q psy13354 32 LIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA---ANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 32 l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~---~vi~~~sGs~A~~~al~a 108 (1342)
+.+++..+++.+.+++...+. .+ .....++.+.+++.+++++|.+. .+++++||++++..++.+
T Consensus 3 ~~p~p~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~ 69 (355)
T TIGR03301 3 LTPGPLSTSATVRDAMLVDWC-HW------------DSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGS 69 (355)
T ss_pred CcCCCCCCCHHHHHHhhhhcc-CC------------CHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHh
Confidence 567777788888888776321 11 11123556668889999999873 455666999999999999
Q ss_pred ccCCCCEEEEeecc-CCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-CeEEEEcCCCCC--cccCHH
Q psy13354 109 VLNPGDTIMGMSLQ-EGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-PKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 109 l~~pGD~Vlv~~~~-~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-~~liv~~~s~~~--~~~~l~ 184 (1342)
++.+||++++.... ++.. ........|..+ +.++.++++.+|++++++.+++++ .++++++.++++ ...+++
T Consensus 70 ~~~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~--~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~ 145 (355)
T TIGR03301 70 LVPRDGKLLVLINGAYGER--LAKICEYLGIPH--TDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLE 145 (355)
T ss_pred ccCCCCeEEEECCCchhhH--HHHHHHHcCCce--EEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHH
Confidence 99889987764422 2221 223345567644 444555567889999999987642 334444333333 455899
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCc------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPG------ 256 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~------ 256 (1342)
+|+++|++||+++|+|++|++|... ..... ..|++++|+|||++|+.| |+++++++.++.+.....++
T Consensus 146 ~i~~l~~~~~~~livD~~~s~g~~~----~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (355)
T TIGR03301 146 AIAKVARSHGAVLIVDAMSSFGAIP----IDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYD 221 (355)
T ss_pred HHHHHHHHcCCEEEEEeccccCCcc----cchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHH
Confidence 9999999999999999998876431 11111 368999999999978888 99999998887765211111
Q ss_pred ----------cccCCcHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC-C-CeEEEEEccCC
Q psy13354 257 ----------IQGGPLMHVIAAKAVAFKEVLKPD-FKIYQKQVVKNAKILSKILDQRGIRIVSGGT-K-SHIILVDLRNK 323 (1342)
Q Consensus 257 ----------~~~~~~~~~~~Aaa~al~~~l~~~-~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~-~-~~~v~i~~~~~ 323 (1342)
...+++.+...++..++.....++ +++..+++.++++++.+.|.+.|+++..++. . ..++++.++..
T Consensus 222 ~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
T TIGR03301 222 QWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDD 301 (355)
T ss_pred HHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCC
Confidence 112344555566666666554444 7778889999999999999998987654322 2 23567777642
Q ss_pred C-CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 324 K-ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 324 ~-~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
. .+.+.+.+.+.++||.+.+...+. .+++|+++...++
T Consensus 302 ~~~~~~~~~~~l~~~gi~i~~~~~~~-------~~~iRis~~~~~~ 340 (355)
T TIGR03301 302 PDFDFDDFYQELKERGFVIYPGKLTL-------ADTFRIGTIGEID 340 (355)
T ss_pred CcchHHHHHHHHHHCCEEEECCcccc-------ccEEEEecCCCCC
Confidence 1 232344444555699998653221 2469999877655
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-18 Score=201.70 Aligned_cols=300 Identities=14% Similarity=0.116 Sum_probs=199.5
Q ss_pred CceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.|.+..+++..+ +.+.+++.+.+.... ..|+ .. +..++++ .++++++.+ +.+++++|+++|+..
T Consensus 25 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~-~~y~------~~-~~~~lr~----aia~~~~~~~~~I~it~G~~~al~~ 92 (353)
T PRK05387 25 KLIKLNTNENPYPPSPKVLEAIRAALGDDL-RLYP------DP-NADALRQ----AIAAYYGLDPEQVFVGNGSDEVLAH 92 (353)
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHhhhhh-hcCC------CC-cHHHHHH----HHHHHhCCCHHHEEEcCCHHHHHHH
Confidence 5588888887664 458888777654211 1222 11 2235555 777788876 456666588889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.+++.|||+|+++.+.++.+ .......|. +++.++.++++.+|++++++ . .+++++++++|| ...+
T Consensus 93 ~~~~l~~~gd~vlv~~P~y~~~---~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~----~-~~~v~~~~P~NPtG~~~~ 162 (353)
T PRK05387 93 AFLAFFNHDRPLLFPDITYSFY---PVYAGLYGI--PYEEIPLDDDFSIDVEDYLR----P-NGGIIFPNPNAPTGIALP 162 (353)
T ss_pred HHHHhcCCCCEEEEeCCCHHHH---HHHHHHcCC--EEEEeecCCCCCCCHHHHHh----c-CCEEEEeCCCCCCCCCCC
Confidence 9999999999999877555333 333456676 45555666678899998863 2 345555566666 4448
Q ss_pred HHHHHHHHHHc-CCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 183 FERFYHIAKNI-NSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 183 l~~I~~la~~~-gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
.+++.++++.+ +++||+||+|.. +.........+ ...++++|+||.+ |.+| ||+++++++++.+......+
T Consensus 163 ~~~~~~l~~~~~~~~livDe~y~~--~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~~~~~~~~~~~l~~~~~~~ 239 (353)
T PRK05387 163 LAEIERILAANPDSVVVIDEAYVD--FGGESAIPLIDRYPNLLVVQTFSKSR-SLAGLRVGFAIGHPELIEALNRVKNSF 239 (353)
T ss_pred HHHHHHHHHhCCCcEEEEeCcccc--cCCcchHHHHhhCCCEEEEEehhHhh-cchhhhceeeecCHHHHHHHHHhhccC
Confidence 88888888876 999999999853 22111111111 1358899999999 6666 99999999988887654332
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
...+.+.+.+.++..++.+ .+++++.++++.++++++.+.|.+.|+.+. +.+++++|+.++. ..+.++.+.+ .+
T Consensus 240 ~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~-~~~~~~~~~l-~~ 313 (353)
T PRK05387 240 NSYPLDRLAQAGAIAAIED--EAYFEETRAKVIATRERLVEELEALGFEVL--PSKANFVFARHPS-HDAAELAAKL-RE 313 (353)
T ss_pred CCCCcCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeEC--CCcCcEEEEECCC-CCHHHHHHHH-HH
Confidence 2223345555555444432 235677788899999999999999888753 3567788988763 2345566665 45
Q ss_pred CCceeeeccCCCCCCCcccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+||.+..+..+. . .+++|++++
T Consensus 314 ~gi~v~~~~~~~---~---~~~iRis~~ 335 (353)
T PRK05387 314 RGIIVRHFNKPR---I---DQFLRITIG 335 (353)
T ss_pred CCEEEEECCCCC---C---CCeEEEEeC
Confidence 699997543221 1 357999987
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-17 Score=198.36 Aligned_cols=309 Identities=15% Similarity=0.099 Sum_probs=205.8
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al 106 (1342)
..+.+++...++.+++++...+. .+ .+...+..+.+++.+++++|.+ ..+++++||+.|+..++
T Consensus 7 ~~~~pgP~~~~~~~~~a~~~~~~-~~------------~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~ 73 (368)
T PRK13479 7 LLLTPGPLTTSRTVREAMLRDWG-SW------------DDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAI 73 (368)
T ss_pred eeecCCCCCCCHHHHHHhCCCCC-CC------------ChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHH
Confidence 34778888888888888665431 10 1112245666888999999985 34657779999999999
Q ss_pred HHccCCCCEEEEeeccCCccchh--hHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-CeEEEEcCCCC-C-ccc
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTH--GMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-PKLIIAGASAY-S-QYI 181 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~--~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-~~liv~~~s~~-~-~~~ 181 (1342)
.++..+||.|++.... ++.. .......|+.+..+ +.++++.+|++++++.+++++ .++++++.+++ + ...
T Consensus 74 ~~l~~~~~~vlv~~~~---~~~~~~~~~~~~~g~~~~~i--~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~ 148 (368)
T PRK13479 74 GSLVPRDGKVLVPDNG---AYGARIAQIAEYLGIAHVVL--DTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILN 148 (368)
T ss_pred HhccCCCCeEEEEeCC---chHHHHHHHHHHcCCcEEEE--ECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCcccccc
Confidence 9999999999876532 2222 24456677755554 555567789999999887542 34454544443 3 445
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCcc--
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPGI-- 257 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~~-- 257 (1342)
|+++|.++|+++|+++|+|++|++|... ..... .+|++++|+|||+.||.| ||+++++++++.+.....++.
T Consensus 149 ~~~~i~~l~~~~~~~livDa~~~~g~~~----~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~ 224 (368)
T PRK13479 149 PLDEIAAVAKRHGKRLIVDAMSSFGAIP----IDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLD 224 (368)
T ss_pred CHHHHHHHHHHcCCEEEEEcccccCCcc----ccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeec
Confidence 9999999999999999999988766431 11111 368999999999988999 999999988777654322211
Q ss_pred --------------ccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC-CC-eEEEEEc
Q psy13354 258 --------------QGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRGIRIVSGGT-KS-HIILVDL 320 (1342)
Q Consensus 258 --------------~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~-~~-~~v~i~~ 320 (1342)
..+++.+...++..++...... ++++..+++.++++++.+.|.+.|+++..++. .. .++.+.+
T Consensus 225 ~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 304 (368)
T PRK13479 225 LYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHA 304 (368)
T ss_pred HHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEEC
Confidence 0144555666666666555433 46777889999999999999999987654211 12 2233444
Q ss_pred cCC--CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 321 RNK--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 321 ~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.. .+..++...+. ++||.+.++..+. ...+|++....++
T Consensus 305 ~~~~~~~~~~l~~~L~-~~gi~v~~g~~~~-------~~~iRis~~~~~t 346 (368)
T PRK13479 305 PADPAYDFKEFYERLK-EQGFVIYPGKLTQ-------VDTFRIGCIGDVD 346 (368)
T ss_pred CCCCCcCHHHHHHHHH-HCCEEEecCCCCC-------CCEEEEecCCCCC
Confidence 432 22344555554 5599997652221 2468998755544
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=211.38 Aligned_cols=312 Identities=13% Similarity=0.094 Sum_probs=205.5
Q ss_pred ceeeeecC-CCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHH-HHhCC------CCceEecCCHH
Q psy13354 29 NIELIASE-NYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLK-KIFNA------EAANVQPHSGS 99 (1342)
Q Consensus 29 ~i~l~a~~-n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la-~~~g~------~~~vi~~~sGs 99 (1342)
.+++..++ ++.+|+ +.+ +.+++.. . .|+...+..++.+++.+.+. +..+. +..++.++||+
T Consensus 102 ~i~l~~g~p~~~~~~~v~e-~~~~~~~---~------~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~ 171 (527)
T PRK09275 102 AVSYVRDQLGFDADEFVYE-LVDGIIG---D------NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGT 171 (527)
T ss_pred HHhhcCCCCCCCCCHHHHH-HHHHHhc---C------CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHH
Confidence 36666666 444444 555 5555531 1 25556666788887777443 33221 12455665889
Q ss_pred HHHHHHHHH-----ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEE
Q psy13354 100 QANQAVFFS-----VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIA 172 (1342)
Q Consensus 100 ~A~~~al~a-----l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~ 172 (1342)
+|+..++.+ +++|||+|+++.+.++. +...+...|.+.++++++.+ ++|.+|++++++++++ +++++++
T Consensus 172 ~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~---Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~-~tkai~l 247 (527)
T PRK09275 172 AAMCYIFDSLKENGLLKAGDKIALMTPIFTP---YLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDP-SIKALFL 247 (527)
T ss_pred HHHHHHHHHHhhhhcCCCCCEEEEeCCChHH---HHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC-CCCEEEE
Confidence 999999886 68999999987755544 34444566666677777654 4588999999998765 4555555
Q ss_pred cCCCCC-----cccCHHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCC---CCCcEEEecCCccCCCCCe---eEE
Q psy13354 173 GASAYS-----QYIDFERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPV---PFADFITSTTHKSLRGPRG---GFI 239 (1342)
Q Consensus 173 ~~s~~~-----~~~~l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l---~~~Divv~S~sK~l~gp~G---G~i 239 (1342)
++|+|| +...+++|+++|++ +|++||+||+|..... .+.+.. ....+++.||||.| |++| ||+
T Consensus 248 ~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s~~~~~~~~~I~v~SfSK~f-~mtG~RlG~i 323 (527)
T PRK09275 248 VNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD---DFRSLFAVLPYNTILVYSFSKYF-GATGWRLGVI 323 (527)
T ss_pred eCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc---cccCHHHhCCCCEEEEeehhhhc-cCcHhHHhhh
Confidence 555666 22368999999965 5999999999976432 122221 12358899999999 8888 999
Q ss_pred EEech-----hHHHH--------------------------------hhccCCccccCCcHHHHHHHH----HHHHHhcc
Q psy13354 240 LMKKK-----YKKII--------------------------------NSAVFPGIQGGPLMHVIAAKA----VAFKEVLK 278 (1342)
Q Consensus 240 v~~~~-----l~~~l--------------------------------~~~~~~~~~~~~~~~~~~Aaa----~al~~~l~ 278 (1342)
+++++ +++.+ +. ...+...+.++|.+.+++ .++.+...
T Consensus 324 ~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~-v~~~~t~~~s~p~Q~a~al~~~~all~~~~ 402 (527)
T PRK09275 324 ALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQ-VALNHTAGLSTPQQVQMALFSLFALLDEED 402 (527)
T ss_pred hcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHH-HHHhhccCCCCHHHHHHHHHHHHHHHhCch
Confidence 99985 33322 11 122233445566666533 23333333
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCcEEe-eCCCCCeEEEEEccCC----------------CCCHHHHHHHHHHCCcee
Q psy13354 279 PDFKIYQKQVVKNAKILSKILDQRGIRIV-SGGTKSHIILVDLRNK----------------KITGKIAESILESANIIC 341 (1342)
Q Consensus 279 ~~~~~~~~~l~~~a~~l~~~L~~~g~~~~-~~~~~~~~v~i~~~~~----------------~~~~~~~~~ll~~~GI~v 341 (1342)
.+.+..++.+.++++.+.+.| |+.+. .++.+++++|++++.. ..+.+++..+++++||.+
T Consensus 403 ~~~~~~~~~~~~Rr~~l~~~L---g~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v 479 (527)
T PRK09275 403 AYKKAMKDIIRRRYKALYEGL---GLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVL 479 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHc---CCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEE
Confidence 467777888888888887777 44332 2456789999998642 135688999999999999
Q ss_pred eeccCCCCCCCccccccccccccccc
Q psy13354 342 NKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 342 ~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
.|+..++.+ .+++|++++...
T Consensus 480 ~PG~~Fg~~-----~~~vRis~a~~~ 500 (527)
T PRK09275 480 LPGGGFGGP-----EWSVRVSLANLN 500 (527)
T ss_pred eCchhhCCC-----CCeEEEEEecCC
Confidence 988777643 357999997643
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=204.77 Aligned_cols=304 Identities=17% Similarity=0.125 Sum_probs=189.7
Q ss_pred eecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc
Q psy13354 33 IASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 33 ~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~ 110 (1342)
++++|+.+| .+++++.+.... . ..|+......+ +++.+++++|.++.+ +++||++|+..++.+++
T Consensus 2 ~~~~~~~~~~~~v~~a~~~~~~~-~-------~~~~~~~~~~~----l~~~~a~~~g~~~~~-~~~~gt~a~~~~~~~l~ 68 (338)
T cd06502 2 FRSDTVTGPTPEMLEAMAAANVG-D-------DVYGEDPTTAK----LEARAAELFGKEAAL-FVPSGTAANQLALAAHT 68 (338)
T ss_pred cccccCCCCCHHHHHHHHhcccC-C-------cccCCCHHHHH----HHHHHHHHhCCCeEE-EecCchHHHHHHHHHhc
Confidence 456666544 388887665421 1 12222333344 445899999944444 44599999999999999
Q ss_pred CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc------CCeEEEEcCCCCCc----c
Q psy13354 111 NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN------KPKLIIAGASAYSQ----Y 180 (1342)
Q Consensus 111 ~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~------~~~liv~~~s~~~~----~ 180 (1342)
++||+|++.+..|.+...........|. +++.++.+. +.+|++++++++++. ++++++++++++++ .
T Consensus 69 ~~gd~v~~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~ 145 (338)
T cd06502 69 QPGGSVICHETAHIYTDEAGAPEFLSGV--KLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPL 145 (338)
T ss_pred CCCCeEEEecCcceeeecCCcHHHHcCc--eEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCH
Confidence 9999999877665443322112234566 455556543 679999999998752 46777776665552 3
Q ss_pred cCHHHHHHHHHHcCCEEEEEcccchhhhhc-CCCCCC-CCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccc
Q psy13354 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAA-GEYPNP-VPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQ 258 (1342)
Q Consensus 181 ~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~~-l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~ 258 (1342)
.++++|+++|++||++||+|++|..+.... +..... ...+|+++.|+||+++++.|+++++++++++.++.....+..
T Consensus 146 ~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 225 (338)
T cd06502 146 DELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAGG 225 (338)
T ss_pred HHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHhCC
Confidence 378889999999999999999986543221 211111 124689999999999545446566788888887654322211
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH---
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILE--- 335 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~--- 335 (1342)
+...++..++++.+.++. ..+.+..+++.++++++.+.|.+.|+.+. ++..+++.+.++.. ......+++
T Consensus 226 ~~~~~~~~~~a~~~~L~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~~~v~~~~~---~~~~~~l~~~l~ 298 (338)
T cd06502 226 GMRQSGFLAAAGLAALEN--DLWLRRLRHDHEMARRLAEALEELGGLES--EVQTNIVLLDPVEA---NAVFVELSKEAI 298 (338)
T ss_pred ChhhHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHhcCCCcc--cccCCeEEEecCCc---cHHHHHHHHHHH
Confidence 111122222222222221 23455668888999999999999887542 34567777776432 223333332
Q ss_pred ---HCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 336 ---SANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 336 ---~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++|+.+.+.. .+++|++++..++.
T Consensus 299 ~~~~~gi~~~~~~----------~~~lRi~~~~~~~~ 325 (338)
T cd06502 299 ERRGEGVLFYAWG----------EGGVRFVTHWDTTE 325 (338)
T ss_pred HhhhCCEEEEecC----------CCeEEEEeecCCCH
Confidence 4698887641 14699999877664
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.4e-18 Score=202.18 Aligned_cols=322 Identities=16% Similarity=0.151 Sum_probs=212.8
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc-
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL- 110 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~- 110 (1342)
.++..++++.+++++.+.+.+. .++++.. +.......+..+.+++.+++++|.+ +.+++++|||+|+..++.++.
T Consensus 5 ~aa~~~~~~~v~~a~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~ 81 (379)
T TIGR03402 5 NNATTRVDPEVLEAMLPYFTEY--FGNPSSM-HSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALA 81 (379)
T ss_pred CcCCCCCCHHHHHHHHHHHHhc--CCCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence 4556788888999988887532 2444322 1112223455566888999999987 456677699999999988763
Q ss_pred --CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHH
Q psy13354 111 --NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERF 186 (1342)
Q Consensus 111 --~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I 186 (1342)
.+||+|++...+|++....+..+...|.. ++.++.+.++.+|++++++.++++ +++++++.++++ ...|+++|
T Consensus 82 ~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~--v~~v~~~~~g~~~~~~l~~~i~~~-~~lv~i~~~~n~tG~~~~~~~I 158 (379)
T TIGR03402 82 AQPEKRHIITTAVEHPAVLSLCQHLEKQGYK--VTYLPVDEEGRLDLEELRAAITDD-TALVSVMWANNETGTIFPIEEI 158 (379)
T ss_pred hcCCCCeEEEcccccHHHHHHHHHHHHcCCE--EEEEccCCCCcCCHHHHHHhcCCC-cEEEEEEcccCCeeecccHHHH
Confidence 45788888777777665555555556764 444566667889999999999764 566555444444 55599999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCC-CCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc------CCccc
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-PFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV------FPGIQ 258 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~------~~~~~ 258 (1342)
.++|+++|+++++|++|+.|...- ... ..+|++++|+||++ ||.| |+++.+++.. +.+.. .....
T Consensus 159 ~~l~~~~g~~vivD~~~~~g~~~~----~~~~~~~D~~~~s~~K~~-gp~G~g~l~v~~~~~--~~p~~~g~~~~~~~~~ 231 (379)
T TIGR03402 159 GEIAKERGALFHTDAVQAVGKIPI----DLKEMNIDMLSLSGHKLH-GPKGVGALYIRKGTR--FRPLLRGGHQERGRRA 231 (379)
T ss_pred HHHHHHcCCEEEEECccccccccc----CcccCCCCEEEEcHHHcC-CCCceEEEEECCCCC--CCCcccCCccCCCcCC
Confidence 999999999999999998765411 111 13799999999955 8999 9999887541 21111 11234
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-C-CcEEeeCCC-C-CeEEEEEccCCCCCHHHHHHHH
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-R-GIRIVSGGT-K-SHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~-g~~~~~~~~-~-~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
++++.+...++..++..... +++...++..++++++.+.|.+ . ++.+..++. . ..++.+.++.. +.+.+...|
T Consensus 232 gt~~~~~~~~l~~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l 308 (379)
T TIGR03402 232 GTENVPGIVGLGKAAELATE-HLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYI--EGEAILLLL 308 (379)
T ss_pred CCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCC--CHHHHHHhh
Confidence 56667777777766655543 7777788899999999999875 3 566644221 1 12343333322 234444456
Q ss_pred HHCCceeeeccCCCCCC-C------------cccccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPE-K------------PYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~-~------------~~~~~~lRi~~~~~~t~~ 370 (1342)
+++||.+.++.....+. . ....+.+|+|++.++|.+
T Consensus 309 ~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~ 357 (379)
T TIGR03402 309 DMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEE 357 (379)
T ss_pred ccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHH
Confidence 77799998753211110 0 001357999999998853
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=201.95 Aligned_cols=318 Identities=14% Similarity=0.068 Sum_probs=196.3
Q ss_pred CceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..+++. +++.+.+++...+.+... . .....|+...+..++++++++++.+. +.+ +.+++++|+++++..
T Consensus 34 ~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~-~-~~~~~Y~p~~g~~~lr~aia~~~~~~-~~~~d~I~it~Ga~~al~~ 110 (402)
T TIGR03542 34 DIIRLGIGDTTQPLPASVIEAFHNAVDELAS-E-ETFRGYGPEQGYPFLREAIAENDYRG-RIDPEEIFISDGAKCDVFR 110 (402)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhcccc-c-ccccCCCCCCCCHHHHHHHHHHHHhc-CCCHHHEEECCCcHHHHHH
Confidence 45778877765 345588888777643211 0 11122444556668888565543221 343 445555477778877
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCc-ee--------EEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEc
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGK-WF--------NSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAG 173 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~-~~--------~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~ 173 (1342)
+ ..++.+||+|++..+.++.+. ......|. ++ ++++++.+ +++.+|++. ..++++++++
T Consensus 111 l-~~l~~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~i~l~ 180 (402)
T TIGR03542 111 L-QSLFGSDNTVAVQDPVYPAYV---DSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE------EPKIDIIYLC 180 (402)
T ss_pred H-HHhcCCCCEEEEeCCCCcchH---HHHHHcCCccccccccccceEEEeecchhhCCCCCccc------cCCceEEEEe
Confidence 5 556689999998776665443 33344454 11 44444544 234444321 1345777776
Q ss_pred CCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CCC---CcEEEecCCccCCCCCe---eEEE
Q psy13354 174 ASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VPF---ADFITSTTHKSLRGPRG---GFIL 240 (1342)
Q Consensus 174 ~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~~---~Divv~S~sK~l~gp~G---G~iv 240 (1342)
+++|| ....+++|+++|++||++||+||+|............. ++. ..++++||||.| |.+| ||++
T Consensus 181 nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-g~pGlRiG~~i 259 (402)
T TIGR03542 181 SPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTA-GFTGVRLGWTV 259 (402)
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCcccc-CCCCcceEEEE
Confidence 77777 22358999999999999999999997654322111111 111 246789999999 6666 9999
Q ss_pred EechhH--------HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC
Q psy13354 241 MKKKYK--------KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK 312 (1342)
Q Consensus 241 ~~~~l~--------~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~ 312 (1342)
++++++ +.+... ......+.+.+.+.++..++......+..+.++.+.++++++.+.|++.|+++. .+.+
T Consensus 260 ~~~~l~~~~~~~~~~~~~~~-~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~ 337 (402)
T TIGR03542 260 VPKELTYADGHSVIQDWERR-QCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAAGFKVY-GGEH 337 (402)
T ss_pred ecHHHhhcchhhHHHHHHHH-hhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhcCceec-CCCc
Confidence 998776 222111 111222333445554443333211124555677788999999999998887753 3457
Q ss_pred CeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 313 SHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 313 ~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++++|+.++....+.+++..+++++||.+.++..++... .+++|+++..
T Consensus 338 ~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~----~~~iRis~~~ 386 (402)
T TIGR03542 338 APYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSG----EGFVRFSAFG 386 (402)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCC----CCEEEEEecC
Confidence 889999998655566788888888899999876554322 3679999644
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=197.87 Aligned_cols=308 Identities=15% Similarity=0.108 Sum_probs=190.2
Q ss_pred eeeeecCCCCcHH----HHHHHhHHHHhccc-------cCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCH
Q psy13354 30 IELIASENYTSLA----VMEAQGTLLTNKYA-------EGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSG 98 (1342)
Q Consensus 30 i~l~a~~n~l~~~----v~eal~~~l~~~~~-------~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sG 98 (1342)
+..++++||++.. +.+++.+++. .|. .+..+++...+ ..++.+++++.+++++|.+.+++++ +|
T Consensus 6 ~~~~~s~~YL~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~gs~~~~g---~~~~~~~~e~~la~~~~~~~~l~~~-sG 80 (370)
T PRK05937 6 SIDFVTNDFLGFSRSDTLVHEVEKRYR-LYCRQFPHAQLGYGGSRAILG---PSSLLDDLEHKIAHFHGAPEAFIVP-SG 80 (370)
T ss_pred eEEeECCCccCCCCCHHHHHHHHHHHH-HhccccCCCCCCCCCcCcccC---ChHHHHHHHHHHHHHhCCCeEEEEC-Ch
Confidence 4578889998765 8888777775 342 23333333322 1233344555999999998887777 89
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEc
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAG 173 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~ 173 (1342)
+.|+..++..+.++||.|++....|++. ...+..... ..+.++. .|++++++.+++. ++.+++++
T Consensus 81 ~~a~~~~~~~~~~~~d~ii~d~~~H~sv---~~~~~~~~~--~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~v~ 150 (370)
T PRK05937 81 YMANLGLCAHLSSVTDYVLWDEQVHISV---VYSLSVISG--WHQSFRH-----NDLDHLESLLESCRQRSFGRIFIFVC 150 (370)
T ss_pred HHHHHHHHHHhCCCCCEEEEEhhhhHHH---HHHHHHcCC--ceEEecC-----CCHHHHHHHHHhhhccCCCcEEEEEe
Confidence 9999877777777888888666555443 333333222 2233333 4899999988742 23455454
Q ss_pred CCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC----CCCCCCCcEEEecCCccCCCCCeeEEEEechhHH
Q psy13354 174 ASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY----PNPVPFADFITSTTHKSLRGPRGGFILMKKKYKK 247 (1342)
Q Consensus 174 ~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~----~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~ 247 (1342)
+.+++ ...|+++|.++|+++|+++++|++|+.|.++.... .......+++++|+||++ |+.|+.+++.++...
T Consensus 151 ~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G~~vl~~~~~~~ 229 (370)
T PRK05937 151 SVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMGAALLSSSEVKQ 229 (370)
T ss_pred cCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCceEEEcCHHHHH
Confidence 43333 56699999999999999999999999886643210 001112346788999999 888866667676666
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCH
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
.+.....++.++++.++...++..+..+.+.+.....++++.++++++.+.|...+. +...++.++.. ..
T Consensus 230 ~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~~~--------~~~~~i~~~~~--~~ 299 (370)
T PRK05937 230 DLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSAAP--------GCVQPIFLPGI--SE 299 (370)
T ss_pred HHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCCC--------CCEEEEEeCCh--hH
Confidence 555333444444333333333333334333223344567888888888887754211 11233444432 23
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+.+...|.++||.+...++|.. +.+|++++..+|.+
T Consensus 300 ~~~~~~L~~~gi~v~~~~~~~~-------~~iRis~~~~~t~e 335 (370)
T PRK05937 300 QELYSKLVETGIRVGVVCFPTG-------PFLRVNLHAFNTED 335 (370)
T ss_pred HHHHHHHHHCCeeEEeeCCCCC-------CEEEEEcCCCCCHH
Confidence 4555556667999986655532 35999999998854
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-18 Score=201.73 Aligned_cols=306 Identities=11% Similarity=0.107 Sum_probs=202.9
Q ss_pred CceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHH
Q psy13354 28 NNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~ 102 (1342)
..+.+..++|+.+++ +++++.+.+..... ....|. ..+...+++++++++.+.+|.+ +.+++++|+++++
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~~----~~~~Y~-~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l 101 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEAAA----GLNRYP-DRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEIL 101 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhh----hhccCC-CCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHH
Confidence 347788888665443 88888877642110 011232 2345678887777777766643 4555665788899
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cc
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QY 180 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~ 180 (1342)
..++.++++|||.|++..+.|+.+ .......|. ++++++.++++.+|++++++++.+.+++++++++++|| ..
T Consensus 102 ~~~~~~~~~~gd~v~v~~P~y~~~---~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~ 176 (368)
T PRK03317 102 QQLLQAFGGPGRTALGFVPSYSMH---PIIARGTHT--EWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTA 176 (368)
T ss_pred HHHHHHhcCCCCEEEEeCCChHHH---HHHHHhcCC--eeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCC
Confidence 999999999999999777555443 333444454 56666666678899999999988666777777777777 44
Q ss_pred cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC----C-CcEEEecCCccCCCCCe---eEEEEechhHHHHhhc
Q psy13354 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----F-ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSA 252 (1342)
Q Consensus 181 ~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----~-~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~ 252 (1342)
.+.+++.++|+.++++||+||+|...... +. ..... . ..++++||||.+ |..| ||+++++++++.+...
T Consensus 177 ~~~~~l~~l~~~~~~~lI~DE~y~~~~~~-~~-~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~~~~~~~~~~l~~~ 253 (368)
T PRK03317 177 LPLDDVEAILDAAPGIVVVDEAYAEFRRS-GT-PSALTLLPEYPRLVVSRTMSKAF-AFAGGRLGYLAAAPAVVDALRLV 253 (368)
T ss_pred CCHHHHHHHHHHCCceEEEeCCchhhccc-CC-cCHHHHHHhCCCEEEEEechhhh-ccchhhhhhhhCCHHHHHHHHhc
Confidence 58999999999999999999999753221 11 11111 1 237788999999 6667 9999999999988765
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
..++. .+...+.++..++. ... .+.+..+++.++++.+.+.|.+.|+.+.. +.+++++|..+. .+.++...
T Consensus 254 ~~~~~---~s~~~~~a~~~~l~-~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~---~~~~~~~~ 324 (368)
T PRK03317 254 RLPYH---LSAVTQAAARAALR-HAD-ELLASVAALRAERDRVVAWLRELGLRVAP-SDANFVLFGRFA---DRHAVWQG 324 (368)
T ss_pred CCCCC---CCHHHHHHHHHHhh-CHH-HHHHHHHHHHHHHHHHHHHHHHCCCEeCC-CCCcEEEEeccC---CHHHHHHH
Confidence 43332 22334444444433 222 44455677888888999999988887643 344555554442 23344544
Q ss_pred HHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.++||.+.+... .+++|++++.
T Consensus 325 -l~~~Gv~v~~~~~---------~~~iRi~~~~ 347 (368)
T PRK03317 325 -LLDRGVLIRDVGI---------PGWLRVTIGT 347 (368)
T ss_pred -HHHCCEEEEeCCC---------CCeEEEecCC
Confidence 4456999985421 2469999763
|
|
| >KOG0259|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=183.56 Aligned_cols=323 Identities=16% Similarity=0.078 Sum_probs=227.2
Q ss_pred CceeeeecC------CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCH
Q psy13354 28 NNIELIASE------NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~------n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sG 98 (1342)
..|.+..|. -..++.+.+|+.+++......+ |+.+.+...-++++++.+.+-+..+ +.++.+.+.
T Consensus 62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~------Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC 135 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNG------YAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGC 135 (447)
T ss_pred eeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCC------cCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccc
Confidence 346665543 2244458889998886433323 4455555565664444433322221 445555488
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++|++.++.++.+||..|+++.+.++.+.+. ....|..++...+-.+.+|++|++.++.++.+++.++++.+++|+.
T Consensus 136 ~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~---a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPc 212 (447)
T KOG0259|consen 136 SQAIELAISSLANPGANILLPRPGFPLYDTR---AIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPC 212 (447)
T ss_pred hHHHHHHHHHhcCCCCceecCCCCCchHHHh---hhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCC
Confidence 9999999999999999999666555444333 3556776666655456889999999999999988888887554444
Q ss_pred ----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC----CcEEEecCCccCCCCCe---eEEEEech---
Q psy13354 179 ----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF----ADFITSTTHKSLRGPRG---GFILMKKK--- 244 (1342)
Q Consensus 179 ----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~----~Divv~S~sK~l~gp~G---G~iv~~~~--- 244 (1342)
+...+++|+++|+++|++||.||+|....++...+.+--.. .-+..+|.||.+ -.+| ||++.++.
T Consensus 213 GnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW-~VPGWRlGWi~~hD~~gv 291 (447)
T KOG0259|consen 213 GNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRW-IVPGWRLGWIALHDPRGV 291 (447)
T ss_pred cccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeeccccccc-ccCCceeeeEEEeccccc
Confidence 33479999999999999999999999887766544322111 346678999977 3455 99998862
Q ss_pred -----hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEE
Q psy13354 245 -----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILV 318 (1342)
Q Consensus 245 -----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i 318 (1342)
..+.+.+. .....+|.+..+.|+-..+.+--++.+.....-+..+++...+.|++. ++.....|.+..+.|+
T Consensus 292 f~~~~~~q~~~~~--~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv 369 (447)
T KOG0259|consen 292 FRDTKVVQGIKNF--LDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMV 369 (447)
T ss_pred ccchHHHHHHHHH--HhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEe
Confidence 22334332 223455667777777666666556678888999999999999999995 5665556778888887
Q ss_pred Ecc-----CCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 319 DLR-----NKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 319 ~~~-----~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+. +..++.+++..+.+|..+.+-|+..++.+ +++|++++...+
T Consensus 370 ~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~------nw~Ri~i~~~~~ 418 (447)
T KOG0259|consen 370 KLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLK------NWLRIVITVEEE 418 (447)
T ss_pred ccchhhhccccccHHHHHHHhhhcceEEeccccccCC------CeEEEEEccChH
Confidence 763 44567899999999999999988777765 469999877655
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-17 Score=199.75 Aligned_cols=334 Identities=14% Similarity=0.087 Sum_probs=201.6
Q ss_pred cccccchHHHHHHHHHHHhc----cCceeeeecCC-C----CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHH
Q psy13354 7 NLSKIDPKIWEIILKEKQRQ----NNNIELIASEN-Y----TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKI 77 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~i~l~a~~n-~----l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~ 77 (1342)
.+..+.+.+...+....++. .+.+.|..++. . .++.+.+++.+.+.. . ..|+...+..+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~--~------~~Y~~~~G~~~lr~~ 80 (404)
T PRK09265 9 KLENVCYDIRGPVLKEAKRLEEEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPT--A------QGYSDSKGLFSARKA 80 (404)
T ss_pred HHHhcCcchhHHHHHHHHHHHHcCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhc--C------CCCCCCCCcHHHHHH
Confidence 34444444444443333322 35577776532 1 344577776665431 1 123444455577775
Q ss_pred HHHHHHHHh--CCC-CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCC
Q psy13354 78 AINRLKKIF--NAE-AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEK 152 (1342)
Q Consensus 78 ~~~~la~~~--g~~-~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~ 152 (1342)
+++++.... +.+ +.+++++|+++++..++.+++++||+|+++++.|+.+ ...+...|. ..+.++.+ .++.
T Consensus 81 ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~---~~~~~~~g~--~~v~~~~~~~~~~~ 155 (404)
T PRK09265 81 IMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLW---TAAVSLSGG--KPVHYLCDEEAGWF 155 (404)
T ss_pred HHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcCh---HHHHHHcCC--EEEEEecccccCCC
Confidence 555554321 333 4556665778899999999999999999887666543 333445565 44444443 4577
Q ss_pred CCHHHHHHHHHhcCCeEEEEcCCCCC-c-ccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---CC-CcEE
Q psy13354 153 IDYKKVEYLAKKNKPKLIIAGASAYS-Q-YID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---PF-ADFI 223 (1342)
Q Consensus 153 id~e~Le~~i~~~~~~liv~~~s~~~-~-~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---~~-~Div 223 (1342)
+|++++++.+.+. ++++++++++|| + ..+ +++|+++|+++|++||+||+|....+....+.+.. .. .-++
T Consensus 156 ~d~~~l~~~~~~~-~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~ 234 (404)
T PRK09265 156 PDLDDIRSKITPR-TKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVT 234 (404)
T ss_pred CCHHHHHHhcccc-ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEE
Confidence 9999999988654 555555455555 3 234 89999999999999999999875443222222211 11 2356
Q ss_pred EecCCccCCCCCe---eEEEEe--ch----hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHH---HHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILMK--KK----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKI---YQKQVVKN 291 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~--~~----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~---~~~~l~~~ 291 (1342)
++||||.+ |.+| ||++++ +. +++.+..... ...+++.+.+.++..++... . ..+. ..+++.++
T Consensus 235 ~~S~SK~~-~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~-~-~~~~~~~~~~~~~~~ 309 (404)
T PRK09265 235 FNGLSKAY-RVAGFRVGWMVLSGPKKHAKGYIEGLDMLAS--MRLCANVPAQHAIQTALGGY-Q-SINELILPGGRLYEQ 309 (404)
T ss_pred Eecchhhc-cCcccceEEEEEeCchHHHHHHHHHHHHHhc--cccCCCcHHHHHHHHHhcCc-h-hHHHHHHHHHHHHHH
Confidence 79999999 6666 999963 33 3333332111 11223344555554444221 1 2222 22467778
Q ss_pred HHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCC----CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 292 AKILSKILDQR-GIRIVSGGTKSHIILVDLRNKK----ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 292 a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~----~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++.+.+.|++. |+.+. .+.+++++|+.++... .+.+++..++.++||.+.++..++... .+++|++++
T Consensus 310 r~~~~~~L~~~~~~~~~-~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~----~~~~Ri~~~ 382 (404)
T PRK09265 310 RDRAWELLNAIPGVSCV-KPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPE----PDHFRIVTL 382 (404)
T ss_pred HHHHHHHHhcCCCCccc-CCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCC----CCeEEEEeC
Confidence 88888999876 66543 3567899999887532 245667778888899999876654322 357999985
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-18 Score=202.08 Aligned_cols=207 Identities=19% Similarity=0.250 Sum_probs=166.5
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHH----cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALD----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~----~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
|-.+|||.+|++++||+++++.+...+. .+..++.++||||||+|||++|+.+++.++..
T Consensus 15 ~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~---------------- 78 (328)
T PRK00080 15 IERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN---------------- 78 (328)
T ss_pred hhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC----------------
Confidence 3578999999999999999998887775 35555678999999999999999999998731
Q ss_pred cchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC---------
Q psy13354 457 SVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP--------- 527 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~--------- 527 (1342)
+...++.......++..++..+ +...+++|||+|.++....+.|...+++..
T Consensus 79 -------------~~~~~~~~~~~~~~l~~~l~~l------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~ 139 (328)
T PRK00080 79 -------------IRITSGPALEKPGDLAAILTNL------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGP 139 (328)
T ss_pred -------------eEEEecccccChHHHHHHHHhc------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCc
Confidence 2222222222223444444332 346799999999999877777777776431
Q ss_pred ---------CcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHH
Q psy13354 528 ---------KYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDA 597 (1342)
Q Consensus 528 ---------~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a 597 (1342)
+..++|++++....+.++|++|| ..+.|.+++.+++.+++.+.+...++.+++++++.|++.++|++|.+
T Consensus 140 ~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a 219 (328)
T PRK00080 140 AARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIA 219 (328)
T ss_pred cccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHH
Confidence 34678999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 598 LSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 598 ~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
.+.++++..++ ...|+.+++.+++.
T Consensus 220 ~~~l~~~~~~a~~~~~~~I~~~~v~~~l~ 248 (328)
T PRK00080 220 NRLLRRVRDFAQVKGDGVITKEIADKALD 248 (328)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 99999876654 35699998887773
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-18 Score=215.31 Aligned_cols=313 Identities=14% Similarity=0.100 Sum_probs=206.5
Q ss_pred CceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC----ceEecCCHHHH
Q psy13354 28 NNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA----ANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~----~vi~~~sGs~A 101 (1342)
..|.+..+++.++++ +++++.+.+. ... + .+ +..++.+++++++++.+|.+. .+++++|++++
T Consensus 698 ~vI~LsinE~d~ppPp~V~eAi~eal~-~~~--~----s~----g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~el 766 (1082)
T PLN02672 698 SLIHMDVDESFLPVPSAVKASIFESFV-RQN--I----SE----SETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLAL 766 (1082)
T ss_pred CEEEEeCCCCCCCCCHHHHHHHHHHHh-hcC--C----CC----CChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHH
Confidence 558899988775544 8888877663 221 1 11 122456778889999988762 46666566668
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-CeEEEEcCCCCC--
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-PKLIIAGASAYS-- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-~~liv~~~s~~~-- 178 (1342)
+..++.++++|||+|+++.+.++.+ ...+...|..+..+++..++++.+|++.+++++++.+ +.+++++|++||
T Consensus 767 L~lll~aLl~pGD~VLVp~PtY~~Y---~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG 843 (1082)
T PLN02672 767 FNKLVLCCVQEGGTLCFPAGSNGTY---VSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTG 843 (1082)
T ss_pred HHHHHHHHcCCCCEEEEeCCChHHH---HHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcC
Confidence 8889999999999999877555444 4455667774444443323468899999999987633 345555444255
Q ss_pred ---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC-----CCC---CC-----CCcEEEecCCccCCCCCe---eEE
Q psy13354 179 ---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY-----PNP---VP-----FADFITSTTHKSLRGPRG---GFI 239 (1342)
Q Consensus 179 ---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~-----~~~---l~-----~~Divv~S~sK~l~gp~G---G~i 239 (1342)
....+++|+++|++||++||+||+|....+....+ .+. .+ ..-++++||||.+ +.+| ||+
T Consensus 844 ~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf-~lpGLRIGyl 922 (1082)
T PLN02672 844 LLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTEL-LSGGHEFGFL 922 (1082)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhh-ccHHHHheeE
Confidence 33378999999999999999999997544422111 000 00 0236788999999 7777 999
Q ss_pred EEech-hHHHHhhccCCccccCCcHHHHHHHH--HHHHH--h--ccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC
Q psy13354 240 LMKKK-YKKIINSAVFPGIQGGPLMHVIAAKA--VAFKE--V--LKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK 312 (1342)
Q Consensus 240 v~~~~-l~~~l~~~~~~~~~~~~~~~~~~Aaa--~al~~--~--l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~ 312 (1342)
++++. +++.+..... ...+....+.++. .++.. . ...+..+.++.+.++++++.+.|.+.|+.+. ++.+
T Consensus 923 Iap~~eLi~~l~~~~~---~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~Gi~v~-~PeG 998 (1082)
T PLN02672 923 ALNDSVLIDAFHSAPG---LSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEACGWDVL-EPQG 998 (1082)
T ss_pred EeCCHHHHHHHHHhhh---hcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeEe-cCCc
Confidence 99764 8888765321 1111112222222 22121 0 1124566777899999999999999998764 4667
Q ss_pred CeEEEEEccC-----------------CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 313 SHIILVDLRN-----------------KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 313 ~~~v~i~~~~-----------------~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++++|++++. ...+.+++..++++.||.+.|+.+++. ++++|++++.
T Consensus 999 GFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~------~g~~RIsfa~ 1062 (1082)
T PLN02672 999 GISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI------PGYCRFSFAL 1062 (1082)
T ss_pred EEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC------CCeEEEEecC
Confidence 8888987631 113457888888888999998765543 3579999885
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=197.10 Aligned_cols=325 Identities=11% Similarity=0.053 Sum_probs=208.2
Q ss_pred cccccccccchHHHHHHHHHH-HhccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHH
Q psy13354 3 IKNENLSKIDPKIWEIILKEK-QRQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAI 79 (1342)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~ 79 (1342)
..+++++..++..+..+.... ......+.+..++... ++.+.+++.+... . ..|....+..+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~-~--------~~Y~~~~G~~~lr~~ia 72 (364)
T PRK07865 2 PVSARLPDFPWDTLAPAKATAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAAD-A--------PGYPTTAGTPELREAIV 72 (364)
T ss_pred CccccCCCccHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCHHHHHHHHHHHh-h--------CCCCCccCCHHHHHHHH
Confidence 345667776666666664333 3334557777665433 3457777655432 1 12444455668888888
Q ss_pred HHHHHHhCC---C-CceEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCC
Q psy13354 80 NRLKKIFNA---E-AANVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKID 154 (1342)
Q Consensus 80 ~~la~~~g~---~-~~vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id 154 (1342)
+++.+.+|. + +.+++++|+++++..++.++ +++||+|++..+.++.+ .......|. +++.++ +
T Consensus 73 ~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~---~~~~~~~g~--~~~~~~-------~ 140 (364)
T PRK07865 73 GWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTY---EVGARLAGA--TVVRAD-------S 140 (364)
T ss_pred HHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccH---HHHHHhcCC--EEEecC-------C
Confidence 888877653 2 45566657778998888887 79999999877655544 344455566 444433 2
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--------CCc
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--------FAD 221 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--------~~D 221 (1342)
++++.. .+++++++++++|| ...++++|+++|++||++||+||+|....+. +.....+. ...
T Consensus 141 ~~~l~~----~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~~~~~ 215 (364)
T PRK07865 141 LTELGP----QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWD-AEPVSILDPRVCGGDHTGL 215 (364)
T ss_pred hhhCCc----ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccC-CCCCccccccccCCccceE
Confidence 333322 35677777666666 2236889999999999999999999754332 21111111 124
Q ss_pred EEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 222 ivv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
++++||||.+ |.+| ||+++++++++.+.........+ .+.+.+.++..++.. ..+.++.++.+.++++.+.+.
T Consensus 216 i~~~S~SK~~-~~~GlRiG~i~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~ 291 (364)
T PRK07865 216 LAVHSLSKQS-NLAGYRAGFVAGDPALVAELLEVRKHAGMM-VPAPVQAAMVAALGD--DAHVREQRERYARRRAVLRPA 291 (364)
T ss_pred EEEeechhcc-CCCceeeEEEecCHHHHHHHHHHHHhcCCC-cCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999 5555 99999999888887543222222 334455544444332 235667788889999999999
Q ss_pred HHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 299 LDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 299 L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
|++.|+.+.. +.+++++|+.++. .+.++. ..+.++||.+.++..++... .+++|++++.
T Consensus 292 L~~~g~~~~~-~~~~~~~~~~~~~--~~~~~~-~~l~~~gv~v~pg~~f~~~~----~~~iRi~~~~ 350 (364)
T PRK07865 292 LEAAGFRVDH-SEAGLYLWATRGE--DCWDTV-AWLAERGILVAPGDFYGPAG----AQHVRVALTA 350 (364)
T ss_pred HHHcCCcccC-CCccEEEEEeCCC--CHHHHH-HHHHHCCEEEeCccccCcCC----CCEEEEEecC
Confidence 9998877543 4567788888742 233444 44556799999876554322 3579999876
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=203.63 Aligned_cols=296 Identities=15% Similarity=0.185 Sum_probs=197.7
Q ss_pred CceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
..+.|..|+|.++++ +++++.+.+.+. ..|+ ..+..++++ .+++++|.+ +.+++++|+++++..
T Consensus 30 ~~i~l~~nen~~~~~~~v~~a~~~~~~~~--~~Yp-------~~g~~~Lr~----aia~~~~~~~~~I~vt~Gs~e~i~~ 96 (366)
T PRK01533 30 SFVKLASNENPFGCSPRVLDELQKSWLDH--ALYP-------DGGATTLRQ----TIANKLHVKMEQVLCGSGLDEVIQI 96 (366)
T ss_pred ceEEeCCCCCCCCCCHHHHHHHHHHHHhc--CcCC-------CCCHHHHHH----HHHHHhCCCcceEEECCCHHHHHHH
Confidence 558899998876543 888887765321 1122 223345555 777778877 456666588889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.++++|||+|++..+.++. +.......|. +++.++.+ ++.+|++++++.+++ +++++++++++|| ...+
T Consensus 97 ~~~~l~~~gd~vlv~~P~y~~---~~~~~~~~g~--~v~~v~~~-~~~~d~~~l~~~~~~-~~~~v~i~~P~NPTG~~~~ 169 (366)
T PRK01533 97 ISRAVLKAGDNIVTAGATFPQ---YRHHAIIEGC--EVKEVALN-NGVYDLDEISSVVDN-DTKIVWICNPNNPTGTYVN 169 (366)
T ss_pred HHHHhcCCCCEEEEcCCcHHH---HHHHHHHcCC--EEEEeecC-CCCcCHHHHHHHhCc-CCcEEEEeCCCCCCCCCcC
Confidence 999999999999977655443 3444566677 44444554 456899999998865 4566666677776 2224
Q ss_pred ---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC---CCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhh
Q psy13354 183 ---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP---VPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINS 251 (1342)
Q Consensus 183 ---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~---l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~ 251 (1342)
+++|+++|++++ ++|+||+|...... +..... ++. ..+++.||||.| |++| ||+++++++++.+..
T Consensus 170 ~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~-~~~~~~~~~~~~~~~vi~~~SfSK~~-~l~GlRiG~~i~~~~~~~~l~~ 246 (366)
T PRK01533 170 DRKLTQFIEGISENT-LIVIDEAYYEYVTA-KDFPETLPLLEKHKNILVLRTFSKAY-GLASFRVGYAVGHEELIEKLNV 246 (366)
T ss_pred HHHHHHHHHhCCCCC-EEEEEccHHHhhcc-ccCcchhHHhccCCCEEEEeCchHHh-cChHHHHhHHhCCHHHHHHHHH
Confidence 556666666666 67789998643322 111111 111 248889999999 7777 999999999988876
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
...++ +.+.+.+.++..++. . .++.+..++.+.++++++.+.++..|+++.. +.++++|+.++. +.++..
T Consensus 247 ~~~~~---~~~~~~q~aa~~~l~-~-~~~~~~~~~~~~~~r~~~~~~l~~~g~~~~~--~~~nf~~~~~~~---~~~~~~ 316 (366)
T PRK01533 247 VRLPF---NVSSLAQKAATIAFG-D-DEFIEEIVRVNTEGLRQYESFCKENEIPFYQ--SQTNFIFLPVEN---GGEIYE 316 (366)
T ss_pred hcCCC---CcCHHHHHHHHHHhC-C-HHHHHHHHHHHHHHHHHHHHHHHhCCCccCC--CcCcEEEEeCCC---HHHHHH
Confidence 54332 334555555555553 2 2366677778888888888888888887643 567899998752 345555
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.++ ++||.|.+. .+++|++++....
T Consensus 317 ~l~-~~GI~Vr~~-----------~~~iRis~~~~~~ 341 (366)
T PRK01533 317 ACA-HAGFIIRPF-----------PNGVRITVGTREQ 341 (366)
T ss_pred HHH-HCCcEEccC-----------CCceEEeCCCHHH
Confidence 555 569999962 2359999877533
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=198.62 Aligned_cols=300 Identities=16% Similarity=0.175 Sum_probs=201.9
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..+++.+ ++.+.+++.+.+.. . . +| ...+..++++ .++++++.+ +.+++++|+++++..
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~--~-----~~-p~~g~~~lr~----~ia~~~~~~~~~i~~t~G~~~~l~~ 96 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHLDE-L--A-----LY-PDGYAPELRT----KVAKHLGVDEEQLLFGAGLDEVIQM 96 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHH-h--h-----cC-CCCcHHHHHH----HHHHHhCCCHHHEEECCCHHHHHHH
Confidence 557788887665 33488887776532 1 1 11 1223445655 777778876 456666588889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.+++++||+|++..+.++. ........|..+. .++.+ ++.+|++.+++.+.+ +++++++++++|| ...+
T Consensus 97 ~~~~~~~~gd~v~~~~p~y~~---~~~~~~~~g~~~~--~~~~~-~~~~d~~~l~~~~~~-~~~~v~i~~p~NPtG~~~~ 169 (359)
T PRK03158 97 ISRALLNPGTNTVMAEPTFSQ---YRHNAIIEGAEVR--EVPLK-DGGHDLEAMLKAIDE-QTKIVWICNPNNPTGTYVN 169 (359)
T ss_pred HHHHHhCCCCEEEEcCCCHHH---HHHHHHHcCCeEE--EEecC-CCCcCHHHHHHhcCC-CCCEEEEeCCCCCCCCCCC
Confidence 999999999999977755543 3334455676444 44554 567899999988765 4566665566666 4447
Q ss_pred HHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhc
Q psy13354 183 FERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSA 252 (1342)
Q Consensus 183 l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~ 252 (1342)
.++|.++++. +|++||+||+|....+... .+..+. ...++++||||.+ |++| ||+++++++++.+...
T Consensus 170 ~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~v~~~~~~~~~~~~ 247 (359)
T PRK03158 170 HEELLSFLESVPSHVLVVLDEAYYEYVTAED-YPDTLPLLEKYENLIVLRTFSKAY-GLAALRVGYGIASEELIEKLNIA 247 (359)
T ss_pred HHHHHHHHHhCCCCcEEEEECchHhhcCCcc-cccHHHHHHhcCCEEEEEechHhh-cCcchhhehhcCCHHHHHHHHHh
Confidence 8888888876 5999999999976543221 111111 1358889999999 7677 9999999999888765
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
...+ + .+.+.+.++..++.+ .++.+..++.+.++++++.+.|.+.|+.+. ++.++++|+.++. .+.+++..
T Consensus 248 ~~~~--~-~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~g~~i~~~~~~--~~~~~~~~ 318 (359)
T PRK03158 248 RPPF--N-TTRIAQYAAIAALED--QAFLKECVEKNAEGLEQYYAFCKEYGLFYY--PSQTNFIFVDTGR--DANELFEA 318 (359)
T ss_pred cCCC--C-CCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeeC--CCcCcEEEEECCC--CHHHHHHH
Confidence 4332 2 334455555444432 235667777788888889999988887764 3456789988742 34566766
Q ss_pred HHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+++ +||.+.++..++. .+++|++++.
T Consensus 319 l~~-~gv~v~~g~~f~~------~~~iRi~~~~ 344 (359)
T PRK03158 319 LLK-KGYIVRSGAALGF------PTGVRITIGL 344 (359)
T ss_pred HHH-CCeEEeeCCCCCC------CCeEEEecCC
Confidence 664 6999998765542 2469999874
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-17 Score=198.63 Aligned_cols=318 Identities=15% Similarity=0.127 Sum_probs=199.3
Q ss_pred CceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CC-CceEecCCHHHHH
Q psy13354 28 NNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AE-AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~-~~vi~~~sGs~A~ 102 (1342)
..+.+..+.+. .++.+.+++.+... . . ..|+...+..++++++++++.. .| .+ +.+++++||++|+
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~a~~~~~~-~-~------~~Y~~~~g~~~lr~~ia~~~~~-~~~~~~~~~i~~t~G~~~al 101 (397)
T PRK07568 31 KVYHLNIGQPDIKTPEVFFEAIKNYDE-E-V------LAYSHSQGIPELREAFAKYYKK-WGIDVEPDEILITNGGSEAI 101 (397)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHhc-C-C------cCcCCCCCCHHHHHHHHHHHHH-hCCCCCcceEEEcCChHHHH
Confidence 34667766653 34457777655432 1 1 1233445556788866666652 23 22 4455665899999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCC-CCHHHHHHHHHhcCCeEEEEcCCCCC-cc
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYS-QY 180 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~-id~e~Le~~i~~~~~~liv~~~s~~~-~~ 180 (1342)
..++.+++++||+|+++++.++.+ .......|..+..++.+.+.++. .+++.+++.+++. ++++++++++|| +.
T Consensus 102 ~~~~~~l~~~gd~Vl~~~p~y~~~---~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~-~~~v~i~~p~NPtG~ 177 (397)
T PRK07568 102 LFAMMAICDPGDEILVPEPFYANY---NGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPK-TKAILISNPGNPTGV 177 (397)
T ss_pred HHHHHHhcCCCCEEEEecCCCccH---HHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCcc-ceEEEEECCCCCCCc
Confidence 999999999999999877555433 33345667644444332222333 3678999888654 455555455555 22
Q ss_pred ----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-----CcEEEecCCccCCCCCe---eEEEEe-chhHH
Q psy13354 181 ----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-----ADFITSTTHKSLRGPRG---GFILMK-KKYKK 247 (1342)
Q Consensus 181 ----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-----~Divv~S~sK~l~gp~G---G~iv~~-~~l~~ 247 (1342)
.++++|+++|+++|++||+|++|....+....+.+.... ..+++.|+||.+ |+.| ||++++ +++++
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~~~~~~~~~~~ 256 (397)
T PRK07568 178 VYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRY-SACGARIGCLISKNKELIA 256 (397)
T ss_pred cCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhc-cCCCcceEEEecCCHHHHH
Confidence 258999999999999999999987544322222222211 237889999999 5555 999985 57777
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCC
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKIT 326 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~ 326 (1342)
.+...... .. +++...+.++..++. ..+.++++.++.+.++++.+.+.|.+. ++.+. .+.+++++|+.++.. .+
T Consensus 257 ~~~~~~~~-~~-~~s~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~g~~~~~~~l~~~-~~ 331 (397)
T PRK07568 257 AAMKLCQA-RL-SPPTLEQIGAAALLD-TPESYFDEVREEYKKRRDILYEELNKIPGVVCE-KPKGAFYIIAKLPVD-DA 331 (397)
T ss_pred HHHHHhhc-cC-CCCcHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-CCCcceEEEEecCCC-CH
Confidence 66543222 12 223444554444443 223467778888999999999999886 55543 356678899998753 34
Q ss_pred HHHHHHHHHH-----CCceeeeccCCCCCCCccccccccccccc
Q psy13354 327 GKIAESILES-----ANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 327 ~~~~~~ll~~-----~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.++...++++ .||.+.|+..+....+ ...+++|++++.
T Consensus 332 ~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~-~~~~~iRls~~~ 374 (397)
T PRK07568 332 EDFAKWLLTDFNYNGETVMVAPASGFYATPG-LGKNEIRIAYVL 374 (397)
T ss_pred HHHHHHHHhhcccccceEEEeCchHhcCCCC-CCCCeEEEEEeC
Confidence 5677777764 5999998765532111 113579999863
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-17 Score=197.12 Aligned_cols=305 Identities=13% Similarity=0.051 Sum_probs=196.4
Q ss_pred CceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCCHHHHH
Q psy13354 28 NNIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~sGs~A~ 102 (1342)
..+.+..+++..++ .+.+++.+... . ...|....+..++++++++++++.+|. + +.+++++|+++|+
T Consensus 25 ~~i~l~~~~p~~~~~~~~~~a~~~~~~-~-------~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al 96 (374)
T PRK05839 25 KGLDLTIGEPQFETPKFIQDALKNNAH-L-------LNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVL 96 (374)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHhh-c-------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence 55777777654433 36666554331 1 122444555668899888898888773 3 4455554667788
Q ss_pred HHHHHHcc--CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 103 QAVFFSVL--NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 103 ~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
..++.+++ .+||.|+++.+.++.+ ...+...|. ++++++.+ +++.+|++..+ + .+++++++++++||
T Consensus 97 ~~~~~~~~~~~~gd~vlv~~P~y~~~---~~~~~~~g~--~v~~v~~~~~~~~~~d~~~~~--~--~~~k~v~i~nP~NP 167 (374)
T PRK05839 97 FNFPQFVLFDKQNPTIAYPNPFYQIY---EGAAIASRA--KVLLMPLTKENDFTPSLNEKE--L--QEVDLVILNSPNNP 167 (374)
T ss_pred HHHHHHHhcCCCCCEEEECCCCchhh---HHHHHhcCC--EEEEeecccccCCcCCcchhh--h--ccccEEEEeCCCCC
Confidence 88888764 5799999776555443 444456676 44555554 34666654432 2 24667777777777
Q ss_pred -----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC----------CCcEEEecCCccCCCCCe---eEEE
Q psy13354 179 -----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----------FADFITSTTHKSLRGPRG---GFIL 240 (1342)
Q Consensus 179 -----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----------~~Divv~S~sK~l~gp~G---G~iv 240 (1342)
....+++|+++|+++|++||+||+|..... ....++... ..-++++||||.| +.+| ||++
T Consensus 168 TG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~-~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~ii 245 (374)
T PRK05839 168 TGRTLSLEELIEWVKLALKHDFILINDECYSEIYE-NTPPPSLLEASILVGNESFKNVLVINSISKRS-SAPGLRSGFIA 245 (374)
T ss_pred cCcccCHHHHHHHHHHHHHcCCEEEeccchhhccc-CCCCCCHhhhhcccCccccCcEEEEecccccc-CCccceeEEEe
Confidence 333688999999999999999999875322 212221111 1237789999998 5666 9999
Q ss_pred EechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEc
Q psy13354 241 MKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 241 ~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~ 320 (1342)
+++++++.+.........+ .+.+.+.++..++.. ..++++.++++.++++.+.+.| ++. .+.+++++|+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l---~~~---~p~gg~fi~~~~ 316 (374)
T PRK05839 246 GDASILKKYKAYRTYLGCA-SPLPLQKAAAVAWLD--DEHAEFFRNIYAKNLKLAREIL---GIT---IPPATFYVWLPV 316 (374)
T ss_pred cCHHHHHHHHHHHhhcCCC-CChHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHhc---CCC---CCCeeEEEEEeC
Confidence 9998888876543222222 234444444444432 3467777888888888877765 333 356789999998
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++ +.+++..+++++||.+.++..++.+.. ..+++|++++.
T Consensus 317 ~~---~~~~~~~l~~~~gi~v~pg~~f~~~~~--~~~~iRis~~~ 356 (374)
T PRK05839 317 DN---DEEFTKKLYQNEGIKVLPGSFLGRNGI--GKGYVRIALVY 356 (374)
T ss_pred CC---hHHHHHHHHHHCCEEEeCchhhCCCCC--CCCeEEEEecC
Confidence 63 457888888778999998765543211 14689999864
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.1e-18 Score=205.06 Aligned_cols=315 Identities=15% Similarity=0.120 Sum_probs=197.1
Q ss_pred ceeeeecC-CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC---CC---ceEecCCHHHH
Q psy13354 29 NIELIASE-NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA---EA---ANVQPHSGSQA 101 (1342)
Q Consensus 29 ~i~l~a~~-n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~---~~---~vi~~~sGs~A 101 (1342)
.+.+..++ ++.+++.++++.+.+.. .+|+ .........++.+.+++.+.++. +. .++.++||++|
T Consensus 96 ~i~l~~g~p~~~~~~~~~~~~~~~~~---~~Y~-----~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~a 167 (521)
T TIGR03801 96 IISYVIDQLGFDPDAFLYEMCDGIIG---DNYP-----VPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAA 167 (521)
T ss_pred HHhhcCCCCCCCCCHHHHHHHHHhhc---CCCC-----CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHH
Confidence 36666665 34444566666666531 1121 11222234444444555554332 22 46666688999
Q ss_pred HHHHHHH-----ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--C-----CCCCHHHHHHHHHhcCCeE
Q psy13354 102 NQAVFFS-----VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--K-----EKIDYKKVEYLAKKNKPKL 169 (1342)
Q Consensus 102 ~~~al~a-----l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--~-----~~id~e~Le~~i~~~~~~l 169 (1342)
+..++.+ ++.|||+|+++.+.++.+ ...+...+.+.++++++.++ + |.+|++++++++++ ++++
T Consensus 168 l~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y---~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~-~~ka 243 (521)
T TIGR03801 168 MCYIFDSLKANELLKKGDKIALMTPIFTPY---LEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDP-SIKA 243 (521)
T ss_pred HHHHHHHHhHhhcCCCCCEEEEeCCCcHHH---HHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCC-CCcE
Confidence 9998887 789999999877655544 33444554445666666542 2 88999999987654 4566
Q ss_pred EEEcCCCCC-----cccCHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC---CCcEEEecCCccCCCCCe---
Q psy13354 170 IIAGASAYS-----QYIDFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP---FADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 170 iv~~~s~~~-----~~~~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~---~~Divv~S~sK~l~gp~G--- 236 (1342)
+++++|+|| +...+++|+++|++| +++||+||+|+.... .+.+... ...+++.|+||+| |.+|
T Consensus 244 i~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~~~~~vI~v~SfSK~f-g~~G~Rl 319 (521)
T TIGR03801 244 LFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAELPYNTIGVYSFSKYF-GATGWRL 319 (521)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhhCCCCEEEEEcchhhc-cCchhhh
Confidence 555555566 223588999999987 999999999975332 1222221 1358899999999 7778
Q ss_pred eEEEEech-----hHH--------HHhh-----------------------ccCCccccCCcHHHHH--H--HHHHHHHh
Q psy13354 237 GFILMKKK-----YKK--------IINS-----------------------AVFPGIQGGPLMHVIA--A--KAVAFKEV 276 (1342)
Q Consensus 237 G~iv~~~~-----l~~--------~l~~-----------------------~~~~~~~~~~~~~~~~--A--aa~al~~~ 276 (1342)
||++++++ +++ .+.. ....+...+...+.+. | ++.++.+.
T Consensus 320 G~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~ 399 (521)
T TIGR03801 320 GTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDK 399 (521)
T ss_pred hhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcc
Confidence 99999864 221 1110 0011112223344444 3 22233333
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhCCcEEe-eCCCCCeEEEEEccCCC----------------CCHHHHHHHHHHCCc
Q psy13354 277 LKPDFKIYQKQVVKNAKILSKILDQRGIRIV-SGGTKSHIILVDLRNKK----------------ITGKIAESILESANI 339 (1342)
Q Consensus 277 l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~-~~~~~~~~v~i~~~~~~----------------~~~~~~~~ll~~~GI 339 (1342)
...+.+..++.+.++++.+.+.| |+.+. .++.+++++|++++... .+.+++.+|+++.||
T Consensus 400 ~~~y~~~~~~~~~~R~~~l~~~L---g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV 476 (521)
T TIGR03801 400 ENAYKAETKDICRRREKLLFRGL---GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGI 476 (521)
T ss_pred chhHHHHHHHHHHHHHHHHHHhc---CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCE
Confidence 33467777888888888888887 55432 23566799999997421 356899999999999
Q ss_pred eeeeccCCCCCCCccccccccccccccc
Q psy13354 340 ICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 340 ~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
.+.|+..++.+. +++|++++..+
T Consensus 477 ~v~PG~~Fg~~~-----~~vRisla~l~ 499 (521)
T TIGR03801 477 VLLPGGGFGGPE-----WSVRVSLANLN 499 (521)
T ss_pred EEeCchhcCCCC-----CeEEEEecCCC
Confidence 999987776532 46999997643
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=197.72 Aligned_cols=305 Identities=10% Similarity=0.062 Sum_probs=189.2
Q ss_pred cCceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
.+.+.+..++|++++ .+++++.+.+.. . ..|+ . ....++++ .++++++.+ +.+++++|+++++.
T Consensus 20 ~~~i~l~~~~~~~~~p~~~~~a~~~~~~~-~-~~y~------~-~~~~~lr~----~ia~~~~~~~~~i~it~Ga~~~l~ 86 (356)
T PRK08056 20 DQLLDFSANINPLGMPVSLKRAIIDNLDC-A-ERYP------D-VEYRHLHQ----ALARHHQVPASWILAGNGETESIF 86 (356)
T ss_pred hhEEEeccccCCCCCCHHHHHHHHHHHHh-c-ccCc------C-ccHHHHHH----HHHHHhCcChhhEEECCCHHHHHH
Confidence 345888888877544 488888776642 1 1222 1 12334444 778888876 45555657788999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-ccc-
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYI- 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~- 181 (1342)
.++.++ .+|+ +++.. +++..+...+...|..+..+++..++++.+| +++.+.+. .+++++++++++|| +..
T Consensus 87 ~~~~~l-~~g~-viv~~---P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~-~~~k~v~l~~p~NPTG~~~ 159 (356)
T PRK08056 87 AVVSGL-KPRR-AMIVT---PGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALT-PDLDCLFLCTPNNPTGLLP 159 (356)
T ss_pred HHHHHh-CCCC-EEEeC---CCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhcc-CCCCEEEEeCCcCCCCCCC
Confidence 888876 6787 45444 3343344455667774444433222345556 34555555 34566666666666 222
Q ss_pred C---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEe-chhHHHHhhc
Q psy13354 182 D---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMK-KKYKKIINSA 252 (1342)
Q Consensus 182 ~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~-~~l~~~l~~~ 252 (1342)
+ +++|+++|+++|++||+|++|.........+.+.+. ..+++++|+||++ |++| ||++++ +++++.+...
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~v~~~~~~~~~l~~~ 238 (356)
T PRK08056 160 ERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFY-AIPGLRLGYLVNSDDAAVARMRRQ 238 (356)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhc-cCcchhheeeecCCHHHHHHHHHh
Confidence 4 889999999999999999998643321111111111 1468899999999 7777 999985 5677777653
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
...+ +.+...+.++..++ +. ..+.++.++.+.++++++.+.|++. ++.+. +++++++|+.++.. +.+++.
T Consensus 239 ~~~~---~~~~~~~~~a~~~l-~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~ 309 (356)
T PRK08056 239 QMPW---SINAFAALAGEVIL-QD-RAYQQATWQWLAEEGARFYQALCALPLLTVW--PGRANYLFLRCERP--DIDLQR 309 (356)
T ss_pred CCCC---chhHHHHHHHHHHh-CC-HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEc--CCCCcEEEEEcCCC--hHHHHH
Confidence 3222 22223333333232 21 2356667788899999999999886 66653 34678899988642 456666
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
.+++ +||.+.++..+.... .+++|++++..
T Consensus 310 ~l~~-~gI~v~~~~~f~~~~----~~~iRis~~~~ 339 (356)
T PRK08056 310 ALLT-QRILIRSCANYPGLD----SRYYRVAIRSA 339 (356)
T ss_pred HHHH-CCeEEEECCCCCCCC----CCEEEEEEcCH
Confidence 6664 699999876542111 35799998753
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-17 Score=197.13 Aligned_cols=324 Identities=18% Similarity=0.177 Sum_probs=211.0
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--CCceEecCCHHHHHHHHHHHcc
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--EAANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~~~vi~~~sGs~A~~~al~al~ 110 (1342)
.++..+.++.|++++.+.+.+.+ +++++.+..+......+++ +++.+.+.++. ++.+++++|+++++..++.++.
T Consensus 5 ~aa~~~~~~~v~~~~~~~~~~~~--~n~~~~~~~~~~~~~~l~~-a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~ 81 (382)
T TIGR03403 5 NNATTMLDPKVKELMDPFFCDIY--GNPNSLHQFGTATHPAIAE-ALDKLYKGINARDLDDIIITSCATESNNWVLKGVY 81 (382)
T ss_pred CcCCCCCCHHHHHHHHHHHHhcC--cCCccccHHHHHHHHHHHH-HHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHH
Confidence 34566788889999888876444 3343322222344556666 44445556665 3566777688999999888762
Q ss_pred -----CC-CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 111 -----NP-GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 111 -----~p-GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
.+ +|+|+++..+++++...+..+...|.. ++.++.++++.+|++++++.+.+. +++++++.++++ ...|
T Consensus 82 ~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~--v~~v~~~~~g~~d~~~l~~~i~~~-t~lv~~~~~~n~tG~~~~ 158 (382)
T TIGR03403 82 FDEILKGGKNHIITTEVEHPAVRATCAFLESLGVE--VTYLPINEQGTITAEQVREAITEK-TALVSVMWANNETGMIFP 158 (382)
T ss_pred HhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCE--EEEEecCCCCCCCHHHHHHhcccC-CeEEEEEcccCCCccccC
Confidence 45 478998888888776666656666774 444566667889999999998764 455555544444 4459
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhH--HHHh--hccCCc
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYK--KIIN--SAVFPG 256 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~--~~l~--~~~~~~ 256 (1342)
+++|.++|+++|+++++|++|+.|... ..... .+|++++|+|||+ ||.| |+++.++.+. ..+. ......
T Consensus 159 ~~~I~~la~~~g~~~ivD~a~~~g~~~----~~~~~~~~D~~~~s~~K~~-gp~G~g~l~vr~~~~~~p~~~g~~~~~~~ 233 (382)
T TIGR03403 159 IKEIGEICKERGVLFHTDAVQAIGKIP----VDVQKAGVDFLSFSAHKFH-GPKGVGGLYIRKGVELTPLFHGGEHMGGR 233 (382)
T ss_pred HHHHHHHHHHcCCEEEEechhhcCCCc----cCccccCCCEEEEcchhhC-CCCceEEEEECCCCCCCCcccCCCCCCCc
Confidence 999999999999999999998876541 11111 3799999999987 8998 9998876531 1110 000112
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC--CCeEEEEEccCCCCCHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT--KSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
..++++.+.+.++..++....+ ..+...+++.+.++++.+.|.+. ++.+..+.. ..+++.+.++.. .+..+...
T Consensus 234 ~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 310 (382)
T TIGR03403 234 RSGTLNVPYIVAMGEAMRLANE-YLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV-EGEAMLWD- 310 (382)
T ss_pred ccCCcChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC-CHHHHHHh-
Confidence 2456767777777777665443 56777788999999999999874 677654221 134556666532 23344444
Q ss_pred HHHCCceeeeccC---CCCCC----------Ccccccccccccccccccc
Q psy13354 334 LESANIICNKNSI---PNDPE----------KPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 334 l~~~GI~v~~~~~---p~~~~----------~~~~~~~lRi~~~~~~t~~ 370 (1342)
|.++||.++.+.. ..... .....+.+|+|++.++|.+
T Consensus 311 L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~ 360 (382)
T TIGR03403 311 LNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEE 360 (382)
T ss_pred hccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHH
Confidence 6677999996421 11100 0111246999999987753
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-17 Score=196.80 Aligned_cols=303 Identities=15% Similarity=0.140 Sum_probs=202.1
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
.+.+.+..++|++ ++.+++++.+.+.. . ..|+. .. ..++++ .+++++|.+ +.+++++|+++++.
T Consensus 32 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~y~~------~~-~~~lr~----~ia~~~~~~~~~i~~t~G~~~~l~ 98 (367)
T PRK02731 32 ADIIKLASNENPLGPSPKAIEAIRAAADE-L-HRYPD------GS-GFELKA----ALAEKFGVDPERIILGNGSDEILE 98 (367)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHh-h-cCCCC------Cc-HHHHHH----HHHHHhCcCHHHEEEcCCHHHHHH
Confidence 4568888877664 34488887776632 2 12221 11 234555 788888876 45666657777888
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++.+++++||+|++..+.++. ........|. +++.++. +++.+|++.+++.+++ ++++++++++++| ...
T Consensus 99 ~~~~~l~~~gd~vl~~~p~y~~---~~~~~~~~g~--~~~~~~~-~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~ 171 (367)
T PRK02731 99 LLARAYLGPGDEVIYSEHGFAV---YPIAAQAVGA--KPVEVPA-KDYGHDLDAMLAAVTP-RTRLVFIANPNNPTGTYL 171 (367)
T ss_pred HHHHHhcCCCCEEEEecCCHHH---HHHHHHHcCC--eEEEecc-cCCCCCHHHHHHHhCC-CCcEEEEeCCCCCCCcCC
Confidence 8889999999999987655432 2333455666 4455555 4577899999998864 5667666666666 444
Q ss_pred CHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCC--CCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhc
Q psy13354 182 DFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPN--PVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSA 252 (1342)
Q Consensus 182 ~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~--~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~ 252 (1342)
+.++|.++|+.+ |++||+|++|............ ..+ ...++++|+||.+ |..| ||+++++++++.+...
T Consensus 172 ~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~~~~~~~~l~~~ 250 (367)
T PRK02731 172 PAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAY-GLAGLRVGYGIAPPEIIDALNRV 250 (367)
T ss_pred CHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhh-cCcccceeeeeCCHHHHHHHHHc
Confidence 888888888875 8999999998765432211111 011 1247788999998 6566 9999999998888765
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
..++.. +.+.+.++...+. . ..+.++.++.+.++++.+.+.|++.|+.+. +..++++|+.++....+.++...
T Consensus 251 ~~~~~~---~~~~~~~a~~~l~-~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~g~~~~i~~~~~~~~~~~~~~ 323 (367)
T PRK02731 251 RQPFNV---NSLALAAAVAALD-D-DAFVEKSRALNAEGMAWLTEFLAELGLEYI--PSVGNFILVDFDDGKDAAEAYQA 323 (367)
T ss_pred cCCCCC---CHHHHHHHHHHhC-C-HHHHHHHHHHHHHHHHHHHHHHHHCCCccC--CCCceEEEEECCCCCCHHHHHHH
Confidence 443322 2344444433332 2 235677788888999999999998887764 34578999998654445566666
Q ss_pred HHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+. ++||.+.+...++. ++++|++++
T Consensus 324 L~-~~gI~v~~~~~~~~------~~~iRis~~ 348 (367)
T PRK02731 324 LL-KRGVIVRPVAGYGL------PNALRITIG 348 (367)
T ss_pred HH-HCCEEEEeCCCCCC------CCeEEEecC
Confidence 55 56999998654432 346999986
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-17 Score=195.30 Aligned_cols=302 Identities=12% Similarity=0.089 Sum_probs=197.4
Q ss_pred ceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHH
Q psy13354 29 NIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAV 105 (1342)
Q Consensus 29 ~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~a 105 (1342)
.+.|..|++.+++ .+.+++.+...... +|+ .. ...++++ .++++++.+ +.+++++|+++++..+
T Consensus 34 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~--~Y~------~~-~~~~Lr~----~ia~~~~~~~~~I~it~G~~~~l~~~ 100 (369)
T PRK08153 34 RARIGANESGFGPSPSVIAAMREAAAEIW--KYG------DP-ENHDLRH----ALAAHHGVAPENIMVGEGIDGLLGLI 100 (369)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHHHHhh--cCC------CC-ccHHHHH----HHHHHhCCCHHHEEEcCCHHHHHHHH
Confidence 3688888876544 38888877653211 222 11 1335555 777788876 5666665777799999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
+.++++|||.|++..+.|+.+ .......|. +++.++.+.+ .+|++++.+.+...+++++++++++|| ...+.
T Consensus 101 ~~~~~~~gd~vlv~~p~y~~~---~~~~~~~g~--~~~~vp~~~~-~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~ 174 (369)
T PRK08153 101 VRLYVEPGDPVVTSLGAYPTF---NYHVAGFGG--RLVTVPYRDD-REDLDALLDAARRENAPLVYLANPDNPMGSWHPA 174 (369)
T ss_pred HHHhcCCCCEEEECCCcchHH---HHHHHHcCC--eEEEeeCCCC-CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCH
Confidence 999999999999766555443 334455666 4555565544 479999988776556778877777777 33366
Q ss_pred HHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCC--CCCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 184 ERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNP--VPFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 184 ~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~--l~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
+++.++++. +|++||+||+|..... .+..... .....++++||||.+ |.+| ||+++++++++.+......+
T Consensus 175 ~~l~~l~~~~~~~~~lI~DE~y~~~~~-~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~v~~~~~~~~l~~~~~~~ 252 (369)
T PRK08153 175 ADIVAFIEALPETTLLVLDEAYCETAP-AGAAPPIDTDDPNVIRMRTFSKAY-GLAGARVGYAIGAPGTIKAFDKVRNHF 252 (369)
T ss_pred HHHHHHHHhCCCCcEEEEeCchhhhcC-cccchhhhhcCCCEEEEecchHhc-cCcchheeeeecCHHHHHHHHHhhcCC
Confidence 555555544 3899999999875432 1211111 111247899999999 6667 99999999988887644332
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC-CCHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK-ITGKIAESILE 335 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~-~~~~~~~~ll~ 335 (1342)
+.+.+.+.++..++. . .++.+..++.+.++++++.+.|++.|+.+. +..++++|++++... ...++..+++
T Consensus 253 ---~~s~~~q~~~~~~l~-~-~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~--p~~~~f~~~~~~~~~~~a~~l~~~l~- 324 (369)
T PRK08153 253 ---GMNRIAQAAALAALK-D-QAYLAEVVGKIAAARDRIAAIARANGLTPL--PSATNFVAIDCGRDGAFARAVLDGLI- 324 (369)
T ss_pred ---CCCHHHHHHHHHHhc-C-HHHHHHHHHHHHHHHHHHHHHHHHCCCccC--CCcCcEEEEECCCCcccHHHHHHHHH-
Confidence 233555555555543 2 246777788889999999999998887643 467889999876332 2345555555
Q ss_pred HCCceeeeccCCCCCCCccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++||.+.. |+... ..+++|++++.
T Consensus 325 ~~Gi~v~~---p~~~~---~~~~iRis~~~ 348 (369)
T PRK08153 325 ARDIFVRM---PGVAP---LDRCIRVSCGP 348 (369)
T ss_pred HCCeEEee---CCCCC---CCCeEEEecCC
Confidence 46999953 22211 13579999874
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=195.80 Aligned_cols=295 Identities=13% Similarity=0.070 Sum_probs=195.1
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..+++.+ ++.+.+++.+.+.. . .. |+.. ...++++ .+++++|.+ +.+++++|+++++..
T Consensus 44 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~------Y~~~-~~~~Lr~----aia~~~~v~~e~I~it~Gs~~ai~~ 110 (370)
T PRK09105 44 GAVFLNANECPLGPSPAARDAAARSAAL-S-GR------YDLE-LEDDLRT----LFAAQEGLPADHVMAYAGSSEPLNY 110 (370)
T ss_pred CcEEecCCCCCCCCCHHHHHHHHHHHHH-h-cC------CCCc-hHHHHHH----HHHHHhCcChhhEEEcCChHHHHHH
Confidence 457788888754 44488888776631 1 11 2221 1345555 777888876 455566588889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.+++++||+|+++++.|+. +.......|. +++.++.++++.+|++.+++. . .+++++++++++|| ...+
T Consensus 111 ~~~~l~~~gd~Vli~~P~y~~---~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~-~-~~~~~v~l~nP~NPTG~~~~ 183 (370)
T PRK09105 111 AVLAFTSPTAGLVTADPTYEA---GWRAADAQGA--PVAKVPLRADGAHDVKAMLAA-D-PNAGLIYICNPNNPTGTVTP 183 (370)
T ss_pred HHHHHcCCCCEEEEeCCChHH---HHHHHHHcCC--eEEEecCCCCCCCCHHHHHhc-C-CCCCEEEEeCCCCCCCcCcC
Confidence 999999999999987755544 4445566676 555556666788999999876 3 34566666666776 3336
Q ss_pred HHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC----CC-cEEEecCCccCCCCCe---eEEEEechhHHHHhhc
Q psy13354 183 FERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP----FA-DFITSTTHKSLRGPRG---GFILMKKKYKKIINSA 252 (1342)
Q Consensus 183 l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~----~~-Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~ 252 (1342)
.++|.++++. +|++||+||+|.... .. ++..+ .. .++++||||++ |+.| ||+++++++++.+...
T Consensus 184 ~~~l~~l~~~~~~~~~lIvDEaY~~f~--~~--~s~~~~~~~~~~vi~~~SfSK~~-g~~GlRiG~~v~~~~~i~~l~~~ 258 (370)
T PRK09105 184 RADIEWLLANKPAGSVLLVDEAYIHFS--DA--PSVVDLVAQRKDLIVLRTFSKLY-GMAGMRLGLAAARPDLLAKLARF 258 (370)
T ss_pred HHHHHHHHHhCCCCcEEEEECchHHhc--cC--cchHHHHhhCCCEEEEecccHhh-cCCccceeeeecCHHHHHHHHhc
Confidence 6666666543 489999999995421 11 11111 12 36778999999 7777 9999999998888764
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
. .+..+.+.+.++..++.+ ..+++..++++.++++++.+.|.+.|+++.. +.+.+++++++ ..+.++...
T Consensus 259 -~---~~~~~~~~~~aa~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~--~~~~f~~~~~~--~~~~~l~~~ 328 (370)
T PRK09105 259 -G---HNPLPVPAAAAGLASLRD--PKLVPQRRAENAAVREDTIAWLKKKGYKCTP--SQANCFMVDVK--RPAKAVADA 328 (370)
T ss_pred -C---CCCcCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCcCC--CCCcEEEEeCC--CCHHHHHHH
Confidence 2 122344555555544443 2467777889999999999999998887643 33445567664 234567777
Q ss_pred HHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++++ ||.+... ++. .++++|++++.
T Consensus 329 L~~~-gI~v~~~-~~~------~~~~~Ris~~~ 353 (370)
T PRK09105 329 MAKQ-GVFIGRS-WPI------WPNWVRVTVGS 353 (370)
T ss_pred HHHC-CcEEecC-CCC------CCCeEEEEcCC
Confidence 7655 9998432 111 13579999884
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-17 Score=193.13 Aligned_cols=268 Identities=15% Similarity=0.123 Sum_probs=172.3
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCH
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDY 155 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~ 155 (1342)
.++++.+++++|.++++ +++||++|+..++.+++.|||+|++.. ++|++....+...|+.+..++.+.+.++.+|+
T Consensus 47 ~~l~~~la~~~g~~~i~-~~~g~t~al~~~l~~~~~~gd~Vl~~~---~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 122 (361)
T cd06452 47 KDFHHDLAEFLGMDEAR-VTPGAREGKFAVMHSLCEKGDWVVVDG---LAHYTSYVAAERAGLNVREVPNTGHPEYHITP 122 (361)
T ss_pred HHHHHHHHHHcCCceEE-EeCCHHHHHHHHHHHhcCCCCEEEEcC---CcchHHHHHHHhcCCEEEEEecCCCCCcccCH
Confidence 33555899999996555 454899999999999999999999765 34444444566777754444333223458999
Q ss_pred HHHHHHHHh------cCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEec
Q psy13354 156 KKVEYLAKK------NKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITST 226 (1342)
Q Consensus 156 e~Le~~i~~------~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S 226 (1342)
+++++.+.+ .+++++++++++++ ...++++|+++|+++|++||+|++|+.|... ..... .+|++++|
T Consensus 123 ~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~----~~~~~~~~d~~~~s 198 (361)
T cd06452 123 EGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMP----VSGKELGADFIVGS 198 (361)
T ss_pred HHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcC----CCHHHcCCCEEEec
Confidence 999998864 24667777666655 5569999999999999999999999876431 11111 36899999
Q ss_pred CCccCCCCCe-eEEEEechhHHHHhhccCCccc-------cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 227 THKSLRGPRG-GFILMKKKYKKIINSAVFPGIQ-------GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 227 ~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~~~-------~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+||+++++.+ |++++++++++.+.....++.. +++......++..++... .+..+ ...+..++++++.+.
T Consensus 199 ~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~-~~~~~~~~~~~l~~~ 276 (361)
T cd06452 199 GHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHV-KERVK-RWDEEVEKARWFVAE 276 (361)
T ss_pred CCccccCCCCeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHH
Confidence 9999955444 9999999888888654332211 121111222223232222 22333 234445667899999
Q ss_pred HHhC-CcEEee-CCCCCeEEEEEccCC--------CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccc
Q psy13354 299 LDQR-GIRIVS-GGTKSHIILVDLRNK--------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGS 363 (1342)
Q Consensus 299 L~~~-g~~~~~-~~~~~~~v~i~~~~~--------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~ 363 (1342)
|.+. |++++. .+...+++.++.+.. ....++...+++ +||.+. .++. ...+|++.
T Consensus 277 L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~~~---~~~~------~~~~ri~~ 341 (361)
T cd06452 277 LEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKK-RGIHGI---KPGL------TRYFKLST 341 (361)
T ss_pred HhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHH-cCceEE---cCCC------ceEEEEEe
Confidence 9997 888763 223456666665421 111245566655 599852 1221 23578877
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=197.49 Aligned_cols=308 Identities=19% Similarity=0.171 Sum_probs=186.0
Q ss_pred eeeeecCCCC-cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHH
Q psy13354 30 IELIASENYT-SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 30 i~l~a~~n~l-~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~a 108 (1342)
+++.++++.. ++.+.+++...- . +.. ..+ ..+...++++ .+++++|.+..++++ +|++++..++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~a~~~~~---~--~~~-~~~--~~~~~~~l~~----~la~~~~~~~~~~~~-~Gs~a~~~~l~~ 74 (353)
T PLN02721 8 VDLRSDTVTKPTDAMRAAMANAE---V--DDD-VLG--YDPTALRLEE----EMAKIFGKEAALFVP-SGTMGNLISVLV 74 (353)
T ss_pred hhhhcccccCCCHHHHHHHHhcc---C--CCc-ccC--CCHHHHHHHH----HHHHHhCCceeEEec-CccHHHHHHHHH
Confidence 5566665444 344777754320 0 111 111 2333455555 889999988776666 889888888888
Q ss_pred ccC-CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh------cCCeEEEEcC-CCCC-c
Q psy13354 109 VLN-PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK------NKPKLIIAGA-SAYS-Q 179 (1342)
Q Consensus 109 l~~-pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~------~~~~liv~~~-s~~~-~ 179 (1342)
++. +||+|++....|......+......|. +++.++.++++.+|++.+++.+++ .+++++++++ ++++ +
T Consensus 75 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G 152 (353)
T PLN02721 75 HCDVRGSEVILGDNSHIHLYENGGISTLGGV--HPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGG 152 (353)
T ss_pred HccCCCCeEEEcCccceehhcccchhhhcCc--eeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCC
Confidence 877 999999766543221111113345565 555556677788999999999974 2456666644 4554 2
Q ss_pred c-c---CHHHHHHHHHHcCCEEEEEcccchhhhh-cCCCCC-CCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhcc
Q psy13354 180 Y-I---DFERFYHIAKNINSYFMVDMAHYAGLIA-AGEYPN-PVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAV 253 (1342)
Q Consensus 180 ~-~---~l~~I~~la~~~gi~LIvDea~~~g~~~-~~~~~~-~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~ 253 (1342)
. . ++++|.++|++||++||+|++|..+... .+.... ....+|+++.|+||+++++.||++++++++++.+....
T Consensus 153 ~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~~~ 232 (353)
T PLN02721 153 RCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIRKAKRLR 232 (353)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCHHHHHhHHHHH
Confidence 2 2 4889999999999999999998654321 111111 11246888889999996666666778888877755432
Q ss_pred CCccccCCcHHHHHH-HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC--CCCHHH
Q psy13354 254 FPGIQGGPLMHVIAA-KAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK--KITGKI 329 (1342)
Q Consensus 254 ~~~~~~~~~~~~~~A-aa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~--~~~~~~ 329 (1342)
..+..+.......++ +..++.+ ..+ ..++..++++++.+.|++. ++.+...++.++++|+.++.. .....+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~----~~~-~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (353)
T PLN02721 233 KTLGGGMRQVGVLAAAALVALQE----NVP-KLEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSRITAEKL 307 (353)
T ss_pred HhcCCCeehhHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCccccHHHH
Confidence 221111111111221 1222222 222 2344467788999999886 665412234467888888652 234455
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
...+. ++||.+.+. . ..++|++++..++
T Consensus 308 ~~~L~-~~gi~v~~~-------~---~~~lR~~~~~~~~ 335 (353)
T PLN02721 308 CKSLE-EHGVLLMPG-------N---SSRIRVVTHHQIS 335 (353)
T ss_pred HHHHH-hCCcEEecC-------C---CceEEEEecCcCC
Confidence 55555 679999864 1 3469999875544
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-17 Score=193.82 Aligned_cols=301 Identities=14% Similarity=0.149 Sum_probs=200.1
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.|.+..+++.+ +|.+++++.+..... ..|+ ... ..++++ .++++++.+ +.+++++|+++++..
T Consensus 20 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~--~~y~------~~~-~~~lr~----~ia~~~~~~~~~i~~~~G~~~~l~~ 86 (346)
T TIGR01141 20 EVIKLNSNENPFGPPPKAKEALRAEADKL--HRYP------DPD-PAELKQ----ALADYYGVDPEQILLGNGSDEIIEL 86 (346)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHhHHHh--hcCC------CCC-HHHHHH----HHHHHhCcChHHEEEcCCHHHHHHH
Confidence 557777766443 344888888765311 1222 111 134444 788888865 456666588889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.+++++||+|+++.+.++ .+.......|. +++.++.+++|.+|++.+++.+.+ ++++++++++++| ...+
T Consensus 87 ~~~~l~~~gd~v~~~~p~y~---~~~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NptG~~~~ 160 (346)
T TIGR01141 87 LIRAFLEPGDAVLVPPPTYS---MYEISAKIHGA--EVVKVPLDEDGQLDLEDILVAIDD-KPKLVFLCSPNNPTGNLLS 160 (346)
T ss_pred HHHHhcCCCCEEEEcCCCHH---HHHHHHHHcCC--eEEEeccCCCCCCCHHHHHHhcCC-CCCEEEEeCCCCCCCCCCC
Confidence 99999999999998775443 23334455666 555566666788999999997754 4566666555555 4448
Q ss_pred HHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCC
Q psy13354 183 FERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 183 l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~ 255 (1342)
++++.++|+.+ |+++|+|++|..... ......... ..+++++|+||++ |+.| ||+++++++.+.+......
T Consensus 161 ~~~~~~l~~~~~~~~~ii~D~~y~~~~~-~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~ 238 (346)
T TIGR01141 161 RSDIEAVLERTPEDALVVVDEAYGEFSG-EPSTLPLLAEYPNLIVLRTLSKAF-GLAGLRIGYAIANAEIIDALNKVRAP 238 (346)
T ss_pred HHHHHHHHHhCCCCcEEEEECchhhhcC-CccHHHHHhhCCCEEEEehhhHhh-hchhhhceeeecCHHHHHHHHhccCC
Confidence 88888888877 999999999873221 111111111 1247789999999 5556 9999999998888764333
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
+ + .+.+.+.++..++ +... ++++.++++.++++++.+.|.+. |+++. +..++++|+.++. .+.++...+.
T Consensus 239 ~--~-~~~~~~~~~~~~l-~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~g~~~~~~~~~--~~~~~~~~L~ 309 (346)
T TIGR01141 239 F--N-LSRLAQAAAIAAL-RDDD-FIEKTVEEINAERERLYDGLKKLPGLEVY--PSDANFVLIRFPR--DADALFEALL 309 (346)
T ss_pred C--C-CCHHHHHHHHHHh-CCHH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEC--CCcCCEEEEecCC--CHHHHHHHHH
Confidence 2 2 2244454443333 3222 57778899999999999999987 77753 3457889998875 3456666555
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++||.+.++..++.. .+++|++++
T Consensus 310 -~~gI~v~~g~~f~~~-----~~~iRls~~ 333 (346)
T TIGR01141 310 -EKGIIVRDLNSYPGL-----PNCLRITVG 333 (346)
T ss_pred -HCCeEEEeCCCcCCC-----CCeEEEecC
Confidence 569999987644211 357999976
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-17 Score=194.53 Aligned_cols=311 Identities=12% Similarity=0.049 Sum_probs=198.3
Q ss_pred HHHHHHHHhccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----C
Q psy13354 17 EIILKEKQRQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----A 90 (1342)
Q Consensus 17 ~~~~~~~~~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~ 90 (1342)
....++.......+.+..+++.. ++.+.+++.+... . ..|....+..++++++++++.+.+|.+ +
T Consensus 11 ~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~-~--------~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~ 81 (357)
T TIGR03539 11 PYKAKAASHPDGIVDLSVGTPVDPVPPLIRAALAAAAD-A--------PGYPQTWGTPELREAIVDWLERRRGVPGLDPT 81 (357)
T ss_pred HHHHHhhhCCCCeEEccCCCCCCCCCHHHHHHHHHHHh-h--------CCCCcccCCHHHHHHHHHHHHHhcCCCCCCcC
Confidence 33333333344557777765433 4457777655431 1 123444555688888888888776543 4
Q ss_pred ceEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeE
Q psy13354 91 ANVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKL 169 (1342)
Q Consensus 91 ~vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~l 169 (1342)
.+++++|+++|+..++.++ +++||.|++..+.++++ ...+...|. +++.++ +++.+. ..++++
T Consensus 82 ~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~---~~~~~~~g~--~~~~v~-------~~~~l~----~~~~~~ 145 (357)
T TIGR03539 82 AVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTY---EVGALLAGA--TPVAAD-------DPTELD----PVGPDL 145 (357)
T ss_pred eEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHH---HHHHHhcCC--EEeccC-------ChhhcC----ccCccE
Confidence 5556657888999988887 79999999776555433 333455666 444432 233322 235667
Q ss_pred EEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--------CCcEEEecCCccCCCCCe
Q psy13354 170 IIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--------FADFITSTTHKSLRGPRG 236 (1342)
Q Consensus 170 iv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--------~~Divv~S~sK~l~gp~G 236 (1342)
+++++++|| ...++++|+++|++||++||+|++|....+. +.....+. ...++++||||.+ +..|
T Consensus 146 v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~G 223 (357)
T TIGR03539 146 IWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWE-GRPVSILDPRVCGGDHTGLLAVHSLSKRS-NLAG 223 (357)
T ss_pred EEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccC-CCCccceecccCCCccccEEEEecccccc-CCCc
Confidence 776666666 2235888999999999999999998643332 11111111 1247889999998 4444
Q ss_pred ---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCC
Q psy13354 237 ---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKS 313 (1342)
Q Consensus 237 ---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~ 313 (1342)
||+++++++++.+........ .+++.+.+.++..++.+ ..+.+..++.+.++++++.+.|.+.|+.+.. +.++
T Consensus 224 ~R~G~~i~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~-p~~~ 299 (357)
T TIGR03539 224 YRAGFVAGDPALVAELLTVRKHAG-LMVPAPVQAAMVAALGD--DGHVAEQKARYAARRAQLKPALEKAGFRIDH-SEAG 299 (357)
T ss_pred eeEEEEecCHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcC-CCcc
Confidence 999999988888765433322 23445555555444422 2356667888889999999999988876543 4567
Q ss_pred eEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 314 HIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 314 ~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+++|+.++. ...++.. .+.++||.+.++.+++... .+++|++++.
T Consensus 300 ~~~~~~~~~--~~~~~~~-~l~~~gV~v~pg~~f~~~~----~~~iRis~~~ 344 (357)
T TIGR03539 300 LYLWATRGE--DAWDTVD-RLAELGILVAPGDFYGPAG----SQHVRVALTA 344 (357)
T ss_pred EEEEEECCC--CHHHHHH-HHHhCCEEECCccccCCCC----CCeEEEEecC
Confidence 788888753 2334554 4566799999876654322 4679999976
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=196.59 Aligned_cols=299 Identities=17% Similarity=0.132 Sum_probs=192.9
Q ss_pred CceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEe-cCCHHHHHH
Q psy13354 28 NNIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQ-PHSGSQANQ 103 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~-~~sGs~A~~ 103 (1342)
+.+.+..++|++++ .+.+++.+.+.. . ..|+. . ...++++ .+++++|.+ +.+++ ++++++++.
T Consensus 35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~y~~------~-~~~~lr~----~ia~~~~~~~~~i~~~~~Ga~~~i~ 101 (361)
T PRK00950 35 SIIKLGSNENPLGPSPKAVEAIEKELSK-I-HRYPE------P-DAPELRE----ALSKYTGVPVENIIVGGDGMDEVID 101 (361)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHHh-h-cCCCC------C-CHHHHHH----HHHHHhCCCHHHEEEeCCCHHHHHH
Confidence 55888888776543 477777766542 1 12221 1 1234454 788888876 33444 535566888
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++.+++++||+|++..+.++ .........|. +++.++.+++|.+|++++++.+.+ ++++++++++++| ...
T Consensus 102 ~~~~~~~~~gd~vlv~~p~y~---~~~~~~~~~g~--~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~p~nptG~~~ 175 (361)
T PRK00950 102 TLMRTFIDPGDEVIIPTPTFS---YYEISAKAHGA--KPVYAKREEDFSLDVDSVLNAITE-KTKVIFLCTPNNPTGNLI 175 (361)
T ss_pred HHHHHhcCCCCEEEEcCCChH---HHHHHHHHcCC--EEEEeecCCCCCcCHHHHHHHhcc-CCCEEEEeCCCCCCCCCc
Confidence 888888999999997765443 33334456676 445556666778999999998865 4555555555555 445
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
+.++|.++|+++|+++|+|++|.... .......... ..++++||||.+ |.+| ||+++++++++.+.....++
T Consensus 176 ~~~~l~~l~~~~~~~li~De~y~~~~--~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~~~~~~~~~~~~~~~ 252 (361)
T PRK00950 176 PEEDIRKILESTDALVFVDEAYVEFA--EYDYTPLALEYDNLIIGRTFSKVF-GLAGLRIGYGFVPEWLIDYYMRAKTPF 252 (361)
T ss_pred CHHHHHHHHHHCCcEEEEECchhhhC--ccchHHHHHhcCCEEEEEeehHhh-cCchhhcchhcCCHHHHHHHHHhcCCC
Confidence 99999999999999999999996432 1111111111 237789999999 7677 99999999988887654443
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
. .+.+.+.++..++.+ .+++++..+++.++++++.+.|. +.+ .+++++++|+.++. ..+.+++..+++
T Consensus 253 ~---~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~l~---~~~--~~~~~~~i~~~~~~-~~~~~~~~~l~~- 320 (361)
T PRK00950 253 S---LTRLSQAAAIAALSD--KEYIEKSIEHGIKSREYLYNELP---FKV--YPSEANFVLVDVTP-MTAKEFCEELLK- 320 (361)
T ss_pred C---CCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhhcC---eeE--CCCcceEEEEECCC-CCHHHHHHHHHH-
Confidence 2 223444444333322 23456666777777777776665 444 24567899998832 334566666665
Q ss_pred CCceeeeccCCCCCCCcccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+||.+.++..+... ..+++|++++
T Consensus 321 ~gv~v~~~~~f~~~----~~~~lRis~~ 344 (361)
T PRK00950 321 RGVIVRDCTSFRGL----GDYYIRVSIG 344 (361)
T ss_pred CCEEEeeCCccCCC----CCCeEEEECC
Confidence 59999886543221 1357999987
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=179.25 Aligned_cols=206 Identities=20% Similarity=0.264 Sum_probs=166.5
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHH----cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALD----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~----~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
.-+..||+.|++.+||+++++.|.-.|+ .+....++|||||||.||||+|..+|++++.
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv----------------- 78 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV----------------- 78 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC-----------------
Confidence 4567899999999999999988866653 3444445899999999999999999999983
Q ss_pred cchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC----------
Q psy13354 457 SVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP---------- 526 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p---------- 526 (1342)
++....+.......++..++..+ ....|++|||+|.++....+.|...+|+.
T Consensus 79 ------------n~k~tsGp~leK~gDlaaiLt~L------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp 140 (332)
T COG2255 79 ------------NLKITSGPALEKPGDLAAILTNL------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGP 140 (332)
T ss_pred ------------CeEecccccccChhhHHHHHhcC------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCC
Confidence 22222222233345666665554 34569999999999999889998888863
Q ss_pred --------CCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHH
Q psy13354 527 --------PKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDA 597 (1342)
Q Consensus 527 --------~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a 597 (1342)
-+...+|.+|++..++..+|++|+ ...++..++.+|+..++.+-+...++.++++++..+|+++.|-+|-+
T Consensus 141 ~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 141 AARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred ccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHH
Confidence 145668999999999999999999 78888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC----CCCCHHHHHHHh
Q psy13354 598 LSLTDQAINYSS----EKITLNSMQEML 621 (1342)
Q Consensus 598 ~~~L~kl~~~~~----~~It~e~V~~~v 621 (1342)
.++|.+.-.|+. ..|+.+.+.+++
T Consensus 221 nRLLrRVRDfa~V~~~~~I~~~ia~~aL 248 (332)
T COG2255 221 NRLLRRVRDFAQVKGDGDIDRDIADKAL 248 (332)
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 999998877763 347766666555
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-16 Score=190.66 Aligned_cols=310 Identities=19% Similarity=0.181 Sum_probs=203.6
Q ss_pred eeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC-ceEecCCHHHHHHHHHHHcc
Q psy13354 32 LIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA-ANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 32 l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~-~vi~~~sGs~A~~~al~al~ 110 (1342)
+.....+..|.+++++.+.+.... +.+ ..+. ...++++.+++++++++|.+. .++++++|++++..++.++.
T Consensus 25 ~~~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~---~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~ 97 (371)
T PRK13520 25 LSSMCTEPHPIARKAHEMFLETNL--GDP--GLFP---GTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAAR 97 (371)
T ss_pred eeeeecCchHHHHHHHHHHHhcCC--CCc--ccCc---cHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHH
Confidence 444466677778899888775322 222 1222 345666788899999999873 34556599999999887764
Q ss_pred C----CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHH
Q psy13354 111 N----PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFER 185 (1342)
Q Consensus 111 ~----pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~ 185 (1342)
. +||+|++.. ++|.+........|..+.. ++.++++.+|++++++.+++.++.++++++++.+ ...|+++
T Consensus 98 ~~~~~~~~~vl~~~---~~h~s~~~~~~~~g~~~~~--v~~~~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~ 172 (371)
T PRK13520 98 NLAKAEKPNIVVPE---SAHFSFDKAADMLGVELRR--APLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPE 172 (371)
T ss_pred hhccCCCceEEecC---cchHHHHHHHHHcCceEEE--ecCCCCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHH
Confidence 3 578999766 4455555555666774444 4666678899999999998765556555543333 5559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCC----CCCCcEEEecCCccCCCCCe-eEEE-EechhHHHHhhccCCccc-
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNP----VPFADFITSTTHKSLRGPRG-GFIL-MKKKYKKIINSAVFPGIQ- 258 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~----l~~~Divv~S~sK~l~gp~G-G~iv-~~~~l~~~l~~~~~~~~~- 258 (1342)
|.++|+++|+++++|++|+.+.......... ...+|++++|.|||..++.+ |+++ .++++++.+... .++..
T Consensus 173 I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~-~~~~~~ 251 (371)
T PRK13520 173 LSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVD-TPYLTS 251 (371)
T ss_pred HHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhccc-CccccC
Confidence 9999999999999999998665322111111 12468999999999754433 5455 555676666421 22221
Q ss_pred -------cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 259 -------GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 259 -------~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
+++......++..++.....++++++.++..++++++.+.|.+.|+++... +..+++.+.++ ...++..
T Consensus 252 ~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~v~~~~~---~~~~v~~ 327 (371)
T PRK13520 252 KKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIE-PVLNIVAFDDP---NPDEVRE 327 (371)
T ss_pred CCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCCCEEecC-CCceEEEEecC---CHHHHHH
Confidence 222223444555555544455677888999999999999999889884332 34566777665 2345555
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+.+ +||.+.+... ...+|++++..++
T Consensus 328 ~L~~-~gi~v~~~~~---------~~~iRis~~~~~t 354 (371)
T PRK13520 328 KLRE-RGWRVSVTRC---------PEALRIVCMPHVT 354 (371)
T ss_pred HHHH-CCceeccCCC---------CCEEEEEEECCCC
Confidence 5554 5999875421 2469999887654
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-16 Score=189.66 Aligned_cols=297 Identities=12% Similarity=0.083 Sum_probs=193.5
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
.+.+.+..++|.. ++.+++++.+.+.. . .+| ....+..++++ .+++++|.+ +.+++++|+++|+.
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~Y------~~~~g~~~lr~----aia~~~~~~~~~I~it~Ga~~al~ 89 (349)
T PRK07908 22 PGLLDFAVNVRHDTPPEWLRERLAARLGD-L-AAY------PSTEDERRARA----AVAARHGRTPDEVLLLAGAAEGFA 89 (349)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHhhH-h-hcC------CCccchHHHHH----HHHHHhCcChhhEEECCCHHHHHH
Confidence 4568888888754 33488888877642 1 122 22233445555 777778876 56666668888998
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++. +.+|+ +++.. +++......+...|. +++.++.++++.+|++.+. + +++++++++++|| ...
T Consensus 90 ~~~~--l~~~~-viv~~---P~y~~~~~~~~~~G~--~i~~v~~~~~~~~d~~~l~----~-~~~~i~l~np~NPTG~~~ 156 (349)
T PRK07908 90 LLAR--LRPRR-AAVVH---PSFTEPEAALRAAGI--PVHRVVLDPPFRLDPAAVP----D-DADLVVIGNPTNPTSVLH 156 (349)
T ss_pred HHHh--cCCCe-EEEeC---CCChHHHHHHHHcCC--EEEeeccCcccCcChhHhc----c-CCCEEEEcCCCCCCCCCc
Confidence 8887 56754 44443 444444555566676 5555666655778888542 2 4567666666666 444
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--CC-CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCC
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--PF-ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~~-~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~ 255 (1342)
+.++|.++|++ +.++|+||+|..... +...+.. +. ..++++||||.+ |++| ||+++++++++.+......
T Consensus 157 ~~~~l~~l~~~-~~~iIvDe~y~~~~~--~~~~~l~~~~~~~~i~i~S~SK~~-~l~GlRiG~~~~~~~~~~~~~~~~~~ 232 (349)
T PRK07908 157 PAEQLLALRRP-GRILVVDEAFADAVP--GEPESLAGDDLPGVLVLRSLTKTW-SLAGLRVGYALGAPDVLARLTRGRAH 232 (349)
T ss_pred CHHHHHHHHhc-CCEEEEECcchhhcc--CCccccccccCCCEEEEeeccccc-CCccceeeeeecCHHHHHHHHhcCCC
Confidence 88999999974 788999999875321 2222211 11 246778999999 6566 9999999999888765443
Q ss_pred ccccCCcHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKE-VLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~-~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
+..+ .+.+.+ ..++.. ....++++.++++.++++++.+.|.+.|+++.. +.+++++|+.+++ .+.+..++
T Consensus 233 ~~~~---~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-p~~g~~~~~~~~~----~~~~~~~l 303 (349)
T PRK07908 233 WPVG---TLQLEA-IAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVD-PAAAPFVLVRVPD----AELLRKRL 303 (349)
T ss_pred CCcc---HHHHHH-HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCCcEecc-CCCceEEEEECCc----HHHHHHHH
Confidence 3222 223333 333322 112356677888999999999999988877643 4678999998874 34566666
Q ss_pred HHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+++||.+.++..+... ..+++|++++.
T Consensus 304 ~~~gI~v~~g~~f~~~----~~~~vRis~~~ 330 (349)
T PRK07908 304 RERGIAVRRGDTFPGL----DPDYLRLAVRP 330 (349)
T ss_pred HhCCEEEEECCCCCCC----CCCeEEEEeCC
Confidence 7789999987544211 14579999864
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-16 Score=189.19 Aligned_cols=296 Identities=16% Similarity=0.133 Sum_probs=187.4
Q ss_pred CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCC-
Q psy13354 36 ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGD- 114 (1342)
Q Consensus 36 ~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD- 114 (1342)
-++.|+.+++++.++.. .| + ...++.+++++++++++|.+++++++ |||+|+..++.+++.+||
T Consensus 22 ~s~~~~~v~~a~~~~~~-~~---------~----~~~~~~~~~~~~~a~~~g~~~~~~~~-g~t~al~~al~al~~~Gd~ 86 (363)
T TIGR01437 22 VSTVSDEVADAQKRGAQ-NY---------F----EIKELVNKTGEYIANLLGVEDAVIVS-SASAGIAQSVAAVITRGNR 86 (363)
T ss_pred CCCCCHHHHHHHHHHHh-cC---------C----CHHHHHHHHHHHHHHhhCCCeEEEEc-CHHHHHHHHHHHHhcCCCc
Confidence 36678889999888763 22 1 13466777888999999998775555 999999999999999998
Q ss_pred --------------EEEEeeccCCccc-hhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC-CCCC
Q psy13354 115 --------------TIMGMSLQEGGHL-THGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA-SAYS 178 (1342)
Q Consensus 115 --------------~Vlv~~~~~~~~~-s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~-s~~~ 178 (1342)
+|+++...+..+. +....+...|. +++.++. ++.+|++++++++++++..+++++. +++.
T Consensus 87 ~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~--~~v~v~~--~~~~d~~~le~ai~~~t~ai~~v~~~~~~~ 162 (363)
T TIGR01437 87 YLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGG--KVVEAGY--ANECSAEQLEAAITEKTAAILYIKSHHCVQ 162 (363)
T ss_pred chhhcccccccccceEEEECccchhcCCchHHHHHhcCC--eEEEEcC--CCCCCHHHHHHhcChhceEEEEEecCCCCc
Confidence 7776552222221 12234455666 4555554 3568999999999876654554443 4433
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCc
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~ 256 (1342)
...++++|+++|++||++|++|++|+.... .... .+|++++|+||+++||.+|++++++++++.+.......
T Consensus 163 g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~------~~~~~g~D~~~~S~~K~l~gp~~G~l~~~~~~i~~~~~~~~~~ 236 (363)
T TIGR01437 163 KSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQ------KYYRLGADLVIYSGAKAIEGPTSGLVLGKKKYIEWVKLQSKGI 236 (363)
T ss_pred CCcCCHHHHHHHHHHcCCeEEEECCCCCchH------HHHHcCCCEEEEeCCcccCCCceEEEEEcHHHHHHHHhccCCC
Confidence 466999999999999999999999973110 0111 26999999999998999999999888877764321111
Q ss_pred ccc-CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCC------CeEEEEEccCCCCCHH
Q psy13354 257 IQG-GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTK------SHIILVDLRNKKITGK 328 (1342)
Q Consensus 257 ~~~-~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~------~~~v~i~~~~~~~~~~ 328 (1342)
... .......+++..++..... ...+..+.+.++++++.+.|.+. |+.+...... ...+.++....+.+..
T Consensus 237 ~~~~~~~~~~~~gl~aAl~~~~~-~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~ 315 (363)
T TIGR01437 237 GRAMKVGKENILGLTAALEQYLS-TGKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESELGMTAA 315 (363)
T ss_pred cceeccCHHHHHHHHHHHHHHHc-cCcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCCCCCHH
Confidence 000 0011223444445444433 22233445556777899999885 7776542111 1223344433344556
Q ss_pred HHHHHHHHCC--ceeeeccCCCCCCCccccccccccccc
Q psy13354 329 IAESILESAN--IICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 329 ~~~~ll~~~G--I~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.+.|++++ |.+++ ++.. .+.+|+....
T Consensus 316 ~l~~~L~~~~~~I~~r~--~~~~------~~~~~l~~~~ 346 (363)
T TIGR01437 316 DVVQALRQGEPAIYTRG--YKAN------EGIIEIDPRS 346 (363)
T ss_pred HHHHHHhcCCCCEEEee--eeec------CCeEEEEeec
Confidence 6666666667 55543 2211 3457777664
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.7e-18 Score=199.10 Aligned_cols=296 Identities=15% Similarity=0.161 Sum_probs=191.6
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~ 107 (1342)
.+.+..|+|+++|+.. +.....+. |+ ... . ..+++++++++|.+ +.+++++|+++++..++.
T Consensus 30 ~~~l~~Nenp~~~~~~--~~~~~~~~----Yp------~~~-~----~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~ 92 (351)
T PRK01688 30 DVWLNANEYPTAVEFQ--LTQQTLNR----YP------ECQ-P----KAVIENYAAYAGVKPEQVLVSRGADEGIELLIR 92 (351)
T ss_pred ceEecCCCCCCCCChh--hccccccc----CC------CCC-h----HHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHH
Confidence 4889999999877631 11110111 22 111 1 34555889999987 455566577889999999
Q ss_pred HccCCC-CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 108 SVLNPG-DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 108 al~~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
+++.+| |.|+++.+.++ .+...++..|. +++.++.++++.+|++.+++.+ + +++++++++++|| ...+.+
T Consensus 93 ~~~~~g~~~vli~~P~y~---~y~~~~~~~G~--~~~~v~~~~~~~~d~~~l~~~~-~-~~~lv~l~nPnNPTG~~~~~~ 165 (351)
T PRK01688 93 AFCEPGKDAILYCPPTYG---MYSVSAETIGV--EIRTVPTLDNWQLDLPAIADNL-D-GVKVVYVCSPNNPTGNLINPQ 165 (351)
T ss_pred HhcCCCCCEEEEcCCCHH---HHHHHHHHcCC--EEEEeecCCCCCCCHHHHHHhc-c-CCcEEEEeCCCCCCCCCCCHH
Confidence 999997 89997664443 34445566777 4455566667889999999877 3 5677777777777 333555
Q ss_pred HHHH---HHHHcCCEEEEEcccchhhhhcCCCCCCCC-C-CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 185 RFYH---IAKNINSYFMVDMAHYAGLIAAGEYPNPVP-F-ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 185 ~I~~---la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~-~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
+|.+ .|++ +.+||+||+|...... ........ . --+++.||||+| |++| ||+++++++++.+.....++
T Consensus 166 ~l~~l~~~~~~-~~~vivDEay~~f~~~-~s~~~~~~~~~n~iv~rSfSK~~-glaGlRiGy~i~~~~~i~~l~~~~~~~ 242 (351)
T PRK01688 166 DLRTLLELTRG-KAIVVADEAYIEFCPQ-ASLAGWLAEYPHLVILRTLSKAF-ALAGLRCGFTLANEEVINLLLKVIAPY 242 (351)
T ss_pred HHHHHHHhCCC-CcEEEEECchhhcCCC-CChHHHHhhCCCEEEEecchHhh-cCHHHHHhHHhCCHHHHHHHHhccCCC
Confidence 5544 4444 6899999998653211 00000011 1 247889999999 8788 99999999999888765555
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
..+ .+.+.++..++.+...+++++.++.+.++++++.+.|.+. ++..+ .++.++++|+.+++ +.++...++
T Consensus 243 ~v~---~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~ps~~nfi~~~~~~---~~~l~~~L~- 314 (351)
T PRK01688 243 PLS---TPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQV-FDSETNYILARFTA---SSAVFKSLW- 314 (351)
T ss_pred CCC---HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeE-CCCCCcEEEEEcCC---HHHHHHHHH-
Confidence 433 3333333333332211356677788888999999999887 55422 24678899998752 345666666
Q ss_pred HCCceeeeccC-CCCCCCccccccccccccc
Q psy13354 336 SANIICNKNSI-PNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 336 ~~GI~v~~~~~-p~~~~~~~~~~~lRi~~~~ 365 (1342)
++||.+..+.. ++. .+++|++++.
T Consensus 315 ~~gi~vr~~~~~~~~------~~~iRis~~~ 339 (351)
T PRK01688 315 DQGIILRDQNKQPGL------SNCLRITIGT 339 (351)
T ss_pred HCCeEEEECCCcCCC------CCeEEEeCCC
Confidence 56999986532 222 3579999884
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.5e-17 Score=194.22 Aligned_cols=310 Identities=14% Similarity=0.102 Sum_probs=196.1
Q ss_pred ceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCCHHHHHH
Q psy13354 29 NIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~sGs~A~~ 103 (1342)
.+++..+.+. .++.+.+++...+.... .....|....+..++++.+++++...++. + +.+++++|+++++.
T Consensus 35 ~~~l~~g~p~~~~~~~v~~a~~~~~~~~~----~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~ 110 (394)
T PRK06836 35 VFDFSLGNPSVPPPAAVKEALRELAEEED----PGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALN 110 (394)
T ss_pred eEEecCcCCCCCCCHHHHHHHHHHHhcCC----cCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHH
Confidence 3666655432 23448888776653211 11223445566778888777777765543 2 44555658889999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCC-CCCCHHHHHHHHHhcCCeEEEEcCCCCC-c--
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYS-Q-- 179 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~-~~id~e~Le~~i~~~~~~liv~~~s~~~-~-- 179 (1342)
.++.+++.+||.|+++++.++. +.......|. +++.++.+++ +.+|++++++++++ +++++++++++|| +
T Consensus 111 ~~~~~l~~~gd~Vli~~p~~~~---~~~~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~ 184 (394)
T PRK06836 111 VALKAILNPGDEVIVFAPYFVE---YRFYVDNHGG--KLVVVPTDTDTFQPDLDALEAAITP-KTKAVIINSPNNPTGVV 184 (394)
T ss_pred HHHHHhcCCCCEEEEcCCCCcc---HHHHHHHcCC--EEEEEecCCccCcCCHHHHHhhcCc-CceEEEEeCCCCCCCcC
Confidence 9999999999999987755544 3444456677 4444455544 78999999999876 4555565555665 2
Q ss_pred --ccCHHHHHHHHHH------cCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhH
Q psy13354 180 --YIDFERFYHIAKN------INSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYK 246 (1342)
Q Consensus 180 --~~~l~~I~~la~~------~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~ 246 (1342)
..++++|+++|++ ||++||+|++|....+........... ..++++|+||.+ |.+| ||+++++++.
T Consensus 185 ~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~pGlRiG~~~~~~~~~ 263 (394)
T PRK06836 185 YSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSL-SLPGERIGYIAVNPEME 263 (394)
T ss_pred CCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhc-cCcceeeEEEecCHHHh
Confidence 2358889999999 899999999987544322111111111 358889999999 6555 9999987653
Q ss_pred HH---Hhh---ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEc
Q psy13354 247 KI---INS---AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 247 ~~---l~~---~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~ 320 (1342)
+. +.. ..........+...+.++...+.+ .. ....+.++++.+.+.|++.|+.+. ++.+++++|+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~--~~~~~~~~r~~l~~~L~~~g~~~~-~~~gg~~~~~~~ 336 (394)
T PRK06836 264 DADDLVAALVFANRILGFVNAPALMQRVVAKCLDA----TV--DVSIYKRNRDLLYDGLTELGFECV-KPQGAFYLFPKS 336 (394)
T ss_pred hhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCC----hH--HHHHHHHHHHHHHHHHHhCCCEee-cCCceEEEEEeC
Confidence 32 111 111111112223334443333221 11 246678888999999998887764 355678999988
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+. ..+.+++ ..+.++||.+.++..+.. .+++|++++
T Consensus 337 ~~-~~~~~~~-~~l~~~gv~v~~g~~f~~------~~~iRi~~~ 372 (394)
T PRK06836 337 PE-EDDVAFC-EKAKKHNLLLVPGSGFGC------PGYFRLSYC 372 (394)
T ss_pred CC-CCHHHHH-HHHHhCCEEEECchhcCC------CCeEEEEec
Confidence 76 3345565 555667999998755532 246999997
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-17 Score=195.15 Aligned_cols=285 Identities=13% Similarity=0.073 Sum_probs=180.2
Q ss_pred cchHHHHHHHHHHHHHHHhCCC--CceEecCCHHH-HHHHHHHHccCC--CCEEEEeeccCCccchhhHHhh-hCCceeE
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQ-ANQAVFFSVLNP--GDTIMGMSLQEGGHLTHGMMLN-MSGKWFN 141 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~-A~~~al~al~~p--GD~Vlv~~~~~~~~~s~~~~~~-~~g~~~~ 141 (1342)
..+..++.+++++++++++|.+ .+++++ +|+. ++.+++.+++.+ ||+|+++...|+.+...+.... ..|. +
T Consensus 59 ~~g~~~~~~~~~~~la~~~g~~~~~v~~~~-~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~--~ 135 (398)
T cd00613 59 SQGRLQALFELQTMLCELTGMDVANASLQD-EATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGI--E 135 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCccceeccC-chHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCc--E
Confidence 4556688899999999999987 555555 5554 555555666666 9999988877776644443322 2235 4
Q ss_pred EEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccC-HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC
Q psy13354 142 SICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYID-FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF 219 (1342)
Q Consensus 142 ~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~-l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~ 219 (1342)
++.++.++++.+|++++++.+.++ ++++++++++++ ...+ +++|+++|++||+++|+|++|+.+.... ... ...
T Consensus 136 ~~~v~~~~~~~~d~~~l~~~i~~~-t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~--~~~-~~~ 211 (398)
T cd00613 136 VVEVPSDEGGTVDLEALKEEVSEE-VAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLK--PPG-EYG 211 (398)
T ss_pred EEEeccCCCCCcCHHHHHHhcCCC-eEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEeccccccCCC--ChH-HcC
Confidence 455566666788999999988764 455555444444 3346 5999999999999999999986544211 011 113
Q ss_pred CcEEEecCCccCCCC------CeeEEEEechhHHHHhhcc-----------------------------CCccccCCcHH
Q psy13354 220 ADFITSTTHKSLRGP------RGGFILMKKKYKKIINSAV-----------------------------FPGIQGGPLMH 264 (1342)
Q Consensus 220 ~Divv~S~sK~l~gp------~GG~iv~~~~l~~~l~~~~-----------------------------~~~~~~~~~~~ 264 (1342)
+|++++|+|||+ +| .+|+++.++++++.+.... ..+.+++. ..
T Consensus 212 ~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~-~~ 289 (398)
T cd00613 212 ADIVVGNLQKTG-VPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQ-AL 289 (398)
T ss_pred CCEEEeeccccC-CCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecH-HH
Confidence 799999999998 43 3389999888777642210 01111111 11
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC--CCCHHHHHHHHHHCCceee
Q psy13354 265 VIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK--KITGKIAESILESANIICN 342 (1342)
Q Consensus 265 ~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~--~~~~~~~~~ll~~~GI~v~ 342 (1342)
...++..++......+++++.+++.++++++.+.|.+.+..........+.+++.++.. ..+.+++..+++ +||.+.
T Consensus 290 ~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~-~gi~~~ 368 (398)
T cd00613 290 LALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALID-GGFHAP 368 (398)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhh-cCcccc
Confidence 22223333444444577788899999999999999987654311111223456666542 223456666655 599875
Q ss_pred eccCCCCCCCccccccccccccccccc
Q psy13354 343 KNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 343 ~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
... + .. .+.+|++.+..++.
T Consensus 369 ~~~-~---~~---~~~lRis~~~~~t~ 388 (398)
T cd00613 369 TMY-L---PV---DGTLMIEPTETETK 388 (398)
T ss_pred ccc-c---CC---CCeEEEEcCCCCCH
Confidence 432 1 11 35799999888774
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-17 Score=198.00 Aligned_cols=324 Identities=17% Similarity=0.169 Sum_probs=205.5
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc--
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al-- 109 (1342)
.++..++++.+++++.+.+...+ +.+.+..+.......+..+.+++.+++++|.+ +.+++++|||+++..++.++
T Consensus 9 ~aa~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~ 86 (402)
T TIGR02006 9 YAATTPVDPRVAEKMMPYLTEKF--GNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAH 86 (402)
T ss_pred CCcCCCCCHHHHHHHHHHHHhcC--CCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 34456788889999888775433 33322111111122345566788999999987 46777779999999888765
Q ss_pred --cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHH
Q psy13354 110 --LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 110 --~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~ 185 (1342)
.++||+|++...+|++....+..+...|. +++.++.++++.+|++.+++.+++. +++++++.++++ ...|+++
T Consensus 87 ~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~--~v~~v~~~~~~~~d~~~l~~~l~~~-~~lv~v~~~~n~tG~~~~~~~ 163 (402)
T TIGR02006 87 FYKSKGNHIITSKTEHKAVLDTCRYLEREGF--EVTYLPPKSNGLIDLEELKAAIRDD-TILVSIMHVNNEIGVIQDIAA 163 (402)
T ss_pred hhcCCCCEEEECCCccHHHHHHHHHHHhcCC--EEEEEccCCCCcCCHHHHHHhcCCC-CEEEEEECCCcCceecccHHH
Confidence 36899999887666655444444445566 4455566677889999999998764 556555554444 4559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC------Cccc
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------PGIQ 258 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------~~~~ 258 (1342)
|.++|+++|+++++|++|+.|...-+. ....+|++++|+||++ ||.| |+++.+++....+..... .+..
T Consensus 164 I~~l~~~~g~~livD~a~a~g~~~~~~---~~~~~D~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~ 239 (402)
T TIGR02006 164 IGEICRERKVFFHVDAAQSVGKIPINV---NELKVDLMSISGHKIY-GPKGIGALYVRRKPRVRLEALIHGGGHERGMRS 239 (402)
T ss_pred HHHHHHHcCCEEEEEcchhcCCcccCc---cccCCCEEEEehhhhc-CCCceEEEEEccCCCCCCCceecCCCccCCccC
Confidence 999999999999999999887652111 0113799999999987 8888 888888654333322111 1233
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC-CC-eEEEEEccCCCCCHHHHHHHHH
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT-KS-HIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~-~~-~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
++++.+...++..++.... ++++...+++.+.++++.+.|.+. ++.+..... .. +...+.+... +.+.....+
T Consensus 240 gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~--~~~~~~~~l- 315 (402)
T TIGR02006 240 GTLPTHQIVGMGEAFRIAK-EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYV--EGESLIMAL- 315 (402)
T ss_pred CCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCc--CHHHHHHhc-
Confidence 5666667777766665544 467778889999999999999874 555543211 11 2222333321 223333333
Q ss_pred HCCceeeecc--CCCCCCC-----------cccccccccccccccccc
Q psy13354 336 SANIICNKNS--IPNDPEK-----------PYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 336 ~~GI~v~~~~--~p~~~~~-----------~~~~~~lRi~~~~~~t~~ 370 (1342)
.+|.++.+. .+....+ ....+.+|+|++.++|.+
T Consensus 316 -~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~e 362 (402)
T TIGR02006 316 -KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEE 362 (402)
T ss_pred -CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHH
Confidence 377665432 1211100 011357899999987743
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-17 Score=194.20 Aligned_cols=302 Identities=16% Similarity=0.177 Sum_probs=196.0
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..++|.+ ++.+.+++.+... . ... |+...+ .++++ .+++++|.+ +.+++++|+++++..
T Consensus 37 ~~i~l~~~~~~~~~~~~~~~al~~~~~-~-~~~------Y~~~~g-~~lr~----~ia~~~~~~~~~i~~t~G~~~~l~~ 103 (371)
T PRK05166 37 RIAKLGSNENPLGPSPAVRRAFADIAE-L-LRL------YPDPQG-RALRE----AIAARTGVPADRIILGNGSEDLIAV 103 (371)
T ss_pred ceEEcCCCCCCCCCCHHHHHHHHHHHH-H-hhc------CCCCcH-HHHHH----HHHHHhCcCHHHEEEcCCHHHHHHH
Confidence 558888887653 3347777665432 1 112 222222 24444 777888876 456666577889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.+++++||+|++..+.++ .........|. ++++++.+.++.+|++++++.+++ .++++++++++|| ...+
T Consensus 104 ~~~~~~~~gd~vli~~P~y~---~~~~~~~~~g~--~~~~v~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~ 177 (371)
T PRK05166 104 ICRAVLRPGDRVVTLYPSFP---LHEDYPTMMGA--RVERVTVTPDLGFDLDALCAAVAR-APRMLMFSNPSNPVGSWLT 177 (371)
T ss_pred HHHHhcCCCCEEEEcCCChH---HHHHHHHHcCC--eEEEeecCCCCCCCHHHHHHhhhc-CCCEEEEeCCCCCCCCCCC
Confidence 99999999999997664444 33444566676 455556666678999999998876 4466666666666 3335
Q ss_pred HHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCC---C-C--CcEEEecCCccCCCCCe---eEEEE-echhHHHHh
Q psy13354 183 FERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPV---P-F--ADFITSTTHKSLRGPRG---GFILM-KKKYKKIIN 250 (1342)
Q Consensus 183 l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l---~-~--~Divv~S~sK~l~gp~G---G~iv~-~~~l~~~l~ 250 (1342)
.+++.++++. .+++||+||+|..... .+.+++.+ . . ..++++||||.| |.+| ||+++ ++++++.+.
T Consensus 178 ~~~~~~l~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~l~GlRiG~~i~~~~~l~~~~~ 255 (371)
T PRK05166 178 ADQLARVLDATPPETLIVVDEAYAEYAA-GDDYPSALTLLKARGLPWIVLRTFSKAY-GLAGLRVGYGLVSDPELVGLLD 255 (371)
T ss_pred HHHHHHHHHhCCCCcEEEEECcHHHhcC-CcCcccHHHHHhhcCCCEEEEeechHhh-hcchhheeeeecCCHHHHHHHH
Confidence 5555555443 4889999999876542 22222211 1 1 247889999999 6666 99776 667777776
Q ss_pred hccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHH
Q psy13354 251 SAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIA 330 (1342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~ 330 (1342)
.....+ + .+...+.++..++.. .+++++.++.+.++++++.+.|++.|+.+. +++++++|++++. .+.++.
T Consensus 256 ~~~~~~--~-~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~--p~~g~fl~~~~~~--~~~~l~ 326 (371)
T PRK05166 256 RVRTPF--N-VNGAAQAAALAALDD--EEHLAKGVALALAERERLKKELAEMGYRIA--PSRANFLFFDARR--PASAVA 326 (371)
T ss_pred HhccCC--C-CCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCcCeeC--CCcCCEEEEeCCC--CHHHHH
Confidence 543322 2 234444444444432 236777788889999999999999888753 4567788998753 245666
Q ss_pred HHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 331 ESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 331 ~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
..+++ +||.+.++..++. .+++|++++..
T Consensus 327 ~~l~~-~gi~v~p~~~~~~------~~~iRi~~~~~ 355 (371)
T PRK05166 327 EALLR-QGVIVKPWKQPGF------ETFIRVSIGSP 355 (371)
T ss_pred HHHHH-CCeEEecCCCCCC------CCeEEEEcCCH
Confidence 66665 5999998654322 45799999864
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-16 Score=189.43 Aligned_cols=283 Identities=19% Similarity=0.183 Sum_probs=184.4
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~ 146 (1342)
.+...++++ .+++++|.+.+++++ ||++|+..++.++ +.+||+|+++...+ .+....+...|. +++.++
T Consensus 17 ~~~~~~~~~----~la~~~~~~~~~~~~-sgt~al~~~l~~l~~~~gd~vl~~~~~~---~~~~~~~~~~g~--~~~~~~ 86 (352)
T cd00616 17 GPKVREFEK----AFAEYLGVKYAVAVS-SGTAALHLALRALGIGPGDEVIVPSFTF---VATANAILLLGA--TPVFVD 86 (352)
T ss_pred CHHHHHHHH----HHHHHhCCCeEEEEC-CHHHHHHHHHHHcCCCCCCEEEeCCcch---HHHHHHHHHcCC--eEEEEe
Confidence 344555555 899999987766666 9999999999998 68999999766444 444555566676 445556
Q ss_pred CCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEe
Q psy13354 147 LNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITS 225 (1342)
Q Consensus 147 ~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~ 225 (1342)
.++ ++.+|++++++.+++ +++++++++ .++...++++|.++|+++|++||+|++|+.|....+..... ..|+.++
T Consensus 87 ~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~--~~d~~~~ 162 (352)
T cd00616 87 IDPDTYNIDPELIEAAITP-RTKAIIPVH-LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGT--FGDAGAF 162 (352)
T ss_pred cCCCcCCcCHHHHHHhcCc-CCeEEEEEC-CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEccc--CcceeEE
Confidence 554 788999999998865 456555543 24456699999999999999999999999876543321121 2478888
Q ss_pred cCC--ccCCCCCeeEEEEec-hhHHHHhhccCCcc-------------ccCCcHHHHHHHHHHHHHhccchHHHHHHHHH
Q psy13354 226 TTH--KSLRGPRGGFILMKK-KYKKIINSAVFPGI-------------QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289 (1342)
Q Consensus 226 S~s--K~l~gp~GG~iv~~~-~l~~~l~~~~~~~~-------------~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~ 289 (1342)
|++ |+++++.||++++++ ++.+.++....... ++....+..+++..... ..++...++..
T Consensus 163 S~~~~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l----~~~~~~~~~~~ 238 (352)
T cd00616 163 SFHPTKNLTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQL----EKLDEIIARRR 238 (352)
T ss_pred cCCCCCCCcccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHH----HhhHHHHHHHH
Confidence 876 999667778888874 66665543211110 11112233333332222 24566778889
Q ss_pred HHHHHHHHHHHhC-CcEEeeCCC----CCeEEEEEccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCcc---------
Q psy13354 290 KNAKILSKILDQR-GIRIVSGGT----KSHIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKPY--------- 354 (1342)
Q Consensus 290 ~~a~~l~~~L~~~-g~~~~~~~~----~~~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~--------- 354 (1342)
++++++.+.|.+. |+++..++. ..+++.+.+++. ..+.+.+...|+++||.+...+.|......+
T Consensus 239 ~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~ 318 (352)
T cd00616 239 EIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPG 318 (352)
T ss_pred HHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcC
Confidence 9999999999984 777654322 234566666541 2244444555566699888766665433211
Q ss_pred --------cccccccccccccc
Q psy13354 355 --------FTSGIRLGSSAITT 368 (1342)
Q Consensus 355 --------~~~~lRi~~~~~~t 368 (1342)
....+|+++...+|
T Consensus 319 ~~~~a~~~~~~~l~l~~~~~~t 340 (352)
T cd00616 319 DLPNAEDLAERVLSLPLHPSLT 340 (352)
T ss_pred CChHHHHHHhCeEEccCCCCCC
Confidence 01467888777655
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=190.91 Aligned_cols=298 Identities=14% Similarity=0.099 Sum_probs=192.8
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
.+.++|..++|..+ |.+.+++.+.+.. ..+|+. .+..+|++ .++++++.+ +.+++++|+++++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~-------~~~~~lr~----~ia~~~~~~~~~I~it~G~~~al~ 96 (357)
T PRK14809 30 DDLVKLSSNENPHGPSPAAVEAIREAAER--VHSYPK-------ASHADLTA----ALADRWDVSPEQVWLANGGDGALD 96 (357)
T ss_pred cceeEecCCCCCCCCCHHHHHHHHHHHhh--hhcCCC-------CCHHHHHH----HHHHHhCCCcceEEECCCHHHHHH
Confidence 35688888876543 3477887766532 122321 22345555 667777766 45556657888999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++.++++|||.|+++.+.++ .+.......|..+..++++.++++.++++.+.+... .++++++++++|| ...
T Consensus 97 ~~~~~~~~~gd~V~v~~P~y~---~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~--~~k~i~l~~p~NPTG~~~ 171 (357)
T PRK14809 97 YLARAMLDPGDTVLVPDPGFA---YYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYD--GERIVYLTSPHNPTGSEI 171 (357)
T ss_pred HHHHHhcCCCCEEEEeCCChH---HHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc--CCcEEEEeCCCCCCCcCC
Confidence 999999999999997775543 333445666776666665544557778888776542 3567777777777 333
Q ss_pred CHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccC
Q psy13354 182 DFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 182 ~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~ 254 (1342)
+.+++.++++.. +++||+||+|...... .......+. ..++++||||.| |.+| ||+++++++++.+.....
T Consensus 172 s~~~~~~l~~~~~~~~~iI~De~y~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~~~~~~~~~~~~~ 249 (357)
T PRK14809 172 PLDEVEALAERTDEETLVVVDEAYGEFAER-PSAVALVEERDDVAVLRTFSKAY-GLAGLRLGYAVVPEEWADAYARVNT 249 (357)
T ss_pred CHHHHHHHHHhCccCcEEEEechhhhccCC-chhHHHHhhCCCEEEEecchhHh-cCcchhheeeecCHHHHHHHHHhCC
Confidence 555555555543 7899999998754321 111111111 247789999999 7677 999999999888876433
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
++ +.+.+.+.++..++.+ ..++++.++.+.++++++.+.|...++ +.+++++|+.++ .+.++... +
T Consensus 250 ~~---~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~-----~~~g~f~~~~~~---~~~~~~~~-l 315 (357)
T PRK14809 250 PF---AASELACRAGLAALDD--DEHVERTVETARWAREYIREELDAPTW-----ESAGNFVLAEVG---DASAVAEA-A 315 (357)
T ss_pred CC---CCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHhcCccC-----CCCCCEEEEECC---CHHHHHHH-H
Confidence 22 2234444444434322 346777778888888888888865422 356788999875 24456655 5
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.++||.+.++..++. .+++|++++
T Consensus 316 ~~~gv~v~~g~~f~~------~~~iRls~~ 339 (357)
T PRK14809 316 QERGVIVRDCTSFGL------PECIRITCG 339 (357)
T ss_pred HHCCEEEEECccCCC------CCeEEEecC
Confidence 667999998876643 246999875
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.6e-17 Score=193.78 Aligned_cols=303 Identities=10% Similarity=0.103 Sum_probs=191.4
Q ss_pred CceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC----CC-CceEecCCHHH
Q psy13354 28 NNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN----AE-AANVQPHSGSQ 100 (1342)
Q Consensus 28 ~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g----~~-~~vi~~~sGs~ 100 (1342)
..+.+..|++..+ +.+++++.+++..... . ..|. ..+..+|++++++++.+.++ .+ +.+++++|+++
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~Y~-~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~ 102 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIE----S-NRYP-DGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDE 102 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhccc----c-cCCC-CCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHH
Confidence 3577888887644 3488888876643110 0 1122 23456788866666554431 33 34555647778
Q ss_pred HHHHHHHHccCCCC-EEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHh---cCCeEEEEcCC
Q psy13354 101 ANQAVFFSVLNPGD-TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKK---NKPKLIIAGAS 175 (1342)
Q Consensus 101 A~~~al~al~~pGD-~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~---~~~~liv~~~s 175 (1342)
++..++.+++.+|| .|++..+.++ .....+...|. +++.++.++ ++.+|++++++.+++ .++++++++++
T Consensus 103 al~~~~~~~~~~g~~~Vlv~~P~y~---~~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P 177 (374)
T PRK02610 103 LIRSLLIATCLGGEGSILVAEPTFS---MYGILAQTLGI--PVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHP 177 (374)
T ss_pred HHHHHHHHHcCCCCCeEEEcCCChH---HHHHHHHHcCC--EEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCC
Confidence 99888888877886 8997665544 34445566677 455556553 478999999998875 56788887777
Q ss_pred CCC--ccc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-C-CcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 176 AYS--QYI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-F-ADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 176 ~~~--~~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~-~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
+|| ... .+++|.++| ++++||+||+|..... ......+. . ..++++||||++ |.+| ||+++++++
T Consensus 178 ~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~--~~~~~~~~~~~~~ivi~SfSK~~-g~~GlRiG~~v~~~~l 252 (374)
T PRK02610 178 NSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQ--TTLVGELAQHPNWVILRTFSKAF-RLAAHRVGYAIGHPEL 252 (374)
T ss_pred CCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCc--cchHHHHhcCCCEEEEEecchhc-cCcccceeeeecCHHH
Confidence 877 222 455555554 4899999999864321 11111111 1 237789999999 7677 999999999
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKK 324 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~ 324 (1342)
++.+......+. .+...+.++..++.+ .. .+.+...++.+.++.+.+.|.+. ++.+ .+.+++++|+.++...
T Consensus 253 ~~~l~~~~~~~~---~~~~~q~a~~~~l~~-~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~~--~p~~g~f~~~~l~~~~ 325 (374)
T PRK02610 253 IAVLEKVRLPYN---LPSFSQLAAQLALEH-RQ-ELLAAIPEILQERDRLYQALQELPQLRV--WPSAANFLYLRLSQDA 325 (374)
T ss_pred HHHHHHhcCCCC---CCHHHHHHHHHHhcC-HH-HHHHHHHHHHHHHHHHHHHHHhCCCcEe--CCCcceEEEEeCCCCC
Confidence 988876543332 234455554444432 22 22333344455577788888775 5654 3567889999987644
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.++... +.++||.+.+. .+++|++++.
T Consensus 326 ~~~~~~~~-l~~~gi~v~~~-----------~~~lRls~~~ 354 (374)
T PRK02610 326 ALAALHQA-LKAQGTLVRHT-----------GGGLRITIGT 354 (374)
T ss_pred CHHHHHHH-HHHCCEEEEeC-----------CCeEEEeCCC
Confidence 44555555 46679998642 2469999875
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.9e-17 Score=191.21 Aligned_cols=260 Identities=15% Similarity=0.139 Sum_probs=179.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~ 146 (1342)
++...++|+ .+++++|.++++.++ |||.|+.+++.++ +++||+|+++++.++ +...++...|. +++.++
T Consensus 24 g~~~~~fE~----~~a~~~g~~~~~~~~-sgt~Al~~al~~l~~~~gdeVi~p~~t~~---~~~~ai~~~G~--~pv~~D 93 (363)
T PF01041_consen 24 GPYVEEFEK----EFAEYFGVKYAVAVS-SGTSALHLALRALGLGPGDEVIVPAYTFP---ATASAILWAGA--EPVFVD 93 (363)
T ss_dssp SHHHHHHHH----HHHHHHTSSEEEEES-SHHHHHHHHHHHTTGGTTSEEEEESSS-T---HHHHHHHHTT---EEEEE-
T ss_pred CHHHHHHHH----HHHHHhCCCeEEEeC-ChhHHHHHHHHhcCCCcCceEecCCCcch---HHHHHHHHhcc--EEEEEe
Confidence 566667777 999999999999988 9999999999999 789999998886654 44555566677 677778
Q ss_pred CC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEe
Q psy13354 147 LN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITS 225 (1342)
Q Consensus 147 ~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~ 225 (1342)
++ +++.+|++.+++++++.+.+++++|. ++.+.++++|.++|+++|++||+|++|++|..+.+...+.+. |+.++
T Consensus 94 i~~~~~~id~~~~~~~i~~~t~ai~~~h~--~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~g--d~~~f 169 (363)
T PF01041_consen 94 IDPETLNIDPEALEKAITPKTKAILVVHL--FGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFG--DIAIF 169 (363)
T ss_dssp BETTTSSB-HHHHHHHHHTTEEEEEEE-G--GGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSS--SEEEE
T ss_pred ccCCcCCcCHHHHHHHhccCccEEEEecC--CCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCC--CceEe
Confidence 77 78999999999999987766666654 334459999999999999999999999999887776666554 88888
Q ss_pred cCC--ccCCCCCeeEEEEec-hhHHHHhhccCCc---------------cccCCcHHHHHHHHHHHHHhccchHHHHHHH
Q psy13354 226 TTH--KSLRGPRGGFILMKK-KYKKIINSAVFPG---------------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQ 287 (1342)
Q Consensus 226 S~s--K~l~gp~GG~iv~~~-~l~~~l~~~~~~~---------------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~ 287 (1342)
||+ |.++++.||++++++ ++.+.++.....+ .++..++..++|...+.++. ++...++
T Consensus 170 Sf~~~K~i~~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~----L~~~~~~ 245 (363)
T PF01041_consen 170 SFHPTKIITTGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKR----LDEIIAR 245 (363)
T ss_dssp ESSTTSSS-SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHT----HHHHHHH
T ss_pred cCCCCCCCcCCCCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHH----hhhhHHH
Confidence 876 999778889999986 5555554422211 12333455666666555544 4566777
Q ss_pred HHHHHHHHHHHHHhCC-cEEeeCCCC-----CeEEEEEccCCC-CCHHHHHHHHHHCCceeeecc
Q psy13354 288 VVKNAKILSKILDQRG-IRIVSGGTK-----SHIILVDLRNKK-ITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 288 l~~~a~~l~~~L~~~g-~~~~~~~~~-----~~~v~i~~~~~~-~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
.++++.++.+.|.+.. +.....+.. .+.+++.+++.. .+.+.+...|++.||.+.+.+
T Consensus 246 R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~ 310 (363)
T PF01041_consen 246 RRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRARGIETRPHY 310 (363)
T ss_dssp HHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBCST
T ss_pred HHHHHHHHHHHHhcCCCcccccccccccccccccccccccccccchHHHHHHHHHHCCCcccccc
Confidence 8899999999999864 544332221 223445555431 245666666666799999765
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-16 Score=187.48 Aligned_cols=310 Identities=19% Similarity=0.197 Sum_probs=200.6
Q ss_pred eeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC-ceEecCCHHHHHHHHHHHcc
Q psy13354 32 LIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA-ANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 32 l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~-~vi~~~sGs~A~~~al~al~ 110 (1342)
+..+.+ ..+.+.+++...+... .+.+ ..+. ....+++.+++++++++|+++ .++++++|++++..++.++.
T Consensus 26 ~~~~~~-~~~~~~~a~~~~~~~~--~~~~--~~~~---~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~ 97 (373)
T TIGR03812 26 GSMCTN-PHPIAVKAYDMFIETN--LGDP--GLFP---GTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAK 97 (373)
T ss_pred EEEeCC-chHHHHHHHHHHhhcC--CCCc--ccCc---cHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHH
Confidence 334343 3334566765554321 1222 2222 234667788899999999873 33444488999888877653
Q ss_pred ------CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCH
Q psy13354 111 ------NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDF 183 (1342)
Q Consensus 111 ------~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l 183 (1342)
.+||+|+++. ++|.+....+...|..+. .++.++++.+|++++++.+.+++..+++++++++. ...|+
T Consensus 98 ~~~~~~~~g~~vl~~~---~~h~~~~~~~~~~G~~~~--~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~ 172 (373)
T TIGR03812 98 NLAREEKRTPNIIVPE---SAHFSFEKAAEMLGLELR--YAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDI 172 (373)
T ss_pred HHHhccCCCcEEEECC---cchHHHHHHHHHcCCeEE--EEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCH
Confidence 4778999665 455555556677787544 44556678899999999998765566666644433 55599
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcC---CCCCCC----CCCcEEEecCCccCCCCC--eeEEEEechhHHHHhhccC
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAG---EYPNPV----PFADFITSTTHKSLRGPR--GGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~---~~~~~l----~~~Divv~S~sK~l~gp~--GG~iv~~~~l~~~l~~~~~ 254 (1342)
++|.++|+++|+++++|++|+.+..... ...... ..+|++++|.|||..+|. ||+++.++++.+.+... .
T Consensus 173 ~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~-~ 251 (373)
T TIGR03812 173 EELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVD-A 251 (373)
T ss_pred HHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhccc-C
Confidence 9999999999999999999986543211 111111 246889999999864543 35666777777766432 2
Q ss_pred Cccc--------cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCC
Q psy13354 255 PGIQ--------GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKIT 326 (1342)
Q Consensus 255 ~~~~--------~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~ 326 (1342)
++.. ++++.....++..++..+..+++++..+++.++++++++.|++.|+..+.+ +..+++.+.+++ .
T Consensus 252 ~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~v~~~~~~---~ 327 (373)
T TIGR03812 252 PYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIE-PVLNIVAFEVDD---P 327 (373)
T ss_pred cccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcC-CCceEEEEEeCC---H
Confidence 3322 233334455555555554455778889999999999999999988764433 345666666553 2
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.++...|. ++||.+..... +..+|++++..++.
T Consensus 328 ~~v~~~L~-~~gi~v~~~~~---------~~~iRis~~~~~t~ 360 (373)
T TIGR03812 328 EEVRKKLR-DRGWYVSVTRC---------PKALRIVVMPHVTR 360 (373)
T ss_pred HHHHHHHH-HCCceeccCCC---------CCEEEEEEECCCCH
Confidence 35555555 45999875421 24699999886553
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-16 Score=188.77 Aligned_cols=288 Identities=14% Similarity=0.124 Sum_probs=185.3
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCE
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDT 115 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~ 115 (1342)
..+++.-++++.+.+.+.+ +..++...++|+ .+++++|.++++.++ |||+|+.+++.++ ++|||+
T Consensus 10 p~~~~~e~~~~~~~l~~~~---------~~~g~~~~~le~----~la~~~g~~~~v~~~-sgt~al~lal~al~~~~Gd~ 75 (379)
T PRK11658 10 PAMGDEELAAVKEVLRSGW---------ITTGPKNQALEQ----AFCQLTGNQHAIAVS-SATAGMHITLMALGIGPGDE 75 (379)
T ss_pred CCCCHHHHHHHHHHHHcCC---------ccCCHhHHHHHH----HHHHHhCCCeEEEEC-CHHHHHHHHHHHcCCCCCCE
Confidence 4456666777777664211 122344556666 899999998776666 9999999999999 899999
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcC
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNIN 194 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~g 194 (1342)
|++++..+.+ ....+...|. +++.++.+ +++.+|++++++.++++ +++|+.++ .++...++++|.++|+++|
T Consensus 76 Viv~~~~~~~---~~~~~~~~G~--~~v~vd~~~~~~~~d~~~l~~~i~~~-tkav~~~~-~~G~~~d~~~i~~~a~~~g 148 (379)
T PRK11658 76 VITPSLTWVS---TLNMIVLLGA--TPVMVDVDRDTLMVTPEAIEAAITPR-TKAIIPVH-YAGAPADLDAIRAIGERYG 148 (379)
T ss_pred EEECCCcHHH---HHHHHHHcCC--EEEEEecCCCcCCcCHHHHHHhcccC-CeEEEEeC-CCCCcCCHHHHHHHHHHcC
Confidence 9987755544 3445566677 55555665 45678999999998764 44544322 2345579999999999999
Q ss_pred CEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEe-chhHHHHhhccCCc-----------------
Q psy13354 195 SYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK-KKYKKIINSAVFPG----------------- 256 (1342)
Q Consensus 195 i~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~-~~l~~~l~~~~~~~----------------- 256 (1342)
++||+|++|++|....+...+... .++++++.+|.++++.||+++++ +++.+.++.....+
T Consensus 149 i~vi~D~a~a~g~~~~~~~~g~~g-~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 227 (379)
T PRK11658 149 IPVIEDAAHAVGTYYKGRHIGARG-TAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQA 227 (379)
T ss_pred CeEEEECCCccCCeECCeecCCCC-CEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcc
Confidence 999999999988765554443332 25666677799978888998886 56666554321110
Q ss_pred -----cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC----C-eEEEEEccCC--C
Q psy13354 257 -----IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK----S-HIILVDLRNK--K 324 (1342)
Q Consensus 257 -----~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~----~-~~v~i~~~~~--~ 324 (1342)
.++..++..++|+..+.+ +.+++..++.+++++++.+.|.+.++.....+.. . +...+.++.. +
T Consensus 228 ~~~~~G~n~~~~~l~AAl~~~ql----~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (379)
T PRK11658 228 EVLTPGYKYNLADINAAIALVQL----AKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERCG 303 (379)
T ss_pred eeeccccccCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCcccc
Confidence 001112233444444433 3556677888888999999998765432221111 1 3334444321 2
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCC
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDP 350 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~ 350 (1342)
.+.+.+...|+++||.+...+.|.+.
T Consensus 304 ~~r~~~~~~L~~~gI~~~~~~~~~~~ 329 (379)
T PRK11658 304 ISRDALMEALKERGIGTGLHFRAAHT 329 (379)
T ss_pred CCHHHHHHHHHHCCCCCcccCcCccc
Confidence 34555555666779988766555443
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=188.99 Aligned_cols=303 Identities=12% Similarity=0.020 Sum_probs=196.2
Q ss_pred CceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..++|..+| .+.+++.+.+.. ..+|+ .. ...+|++ .++++++.+ +.+++++|+++++..
T Consensus 23 ~~i~l~~~~n~~~~~~~~~~a~~~~~~~--~~~Y~------~~-~~~~Lr~----aia~~~~v~~~~I~it~G~~~~i~~ 89 (360)
T PRK07392 23 AILDFSASINPLGPPESVIAAIQSALSA--LRHYP------DP-DYRELRL----ALAQHHQLPPEWILPGNGAAELLTW 89 (360)
T ss_pred cEEEeCCcCCCCCCCHHHHHHHHHHHHH--hhcCC------Cc-CHHHHHH----HHHHHhCcChhhEEECCCHHHHHHH
Confidence 44778888776543 388887766642 11222 11 1235555 666777766 445555477889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCC-----CCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKE-----KIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~-----~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
++.++. +||.|++..+.++ .....+...|. ++++++.+.++ ..+++.+++.. ..++++++++++||
T Consensus 90 ~~~~l~-~g~~vlv~~P~y~---~~~~~~~~~g~--~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~nP~NPT 161 (360)
T PRK07392 90 AGRELA-QLRAVYLITPAFG---DYRRALRAFGA--TVKELPLPLDQPSPGLTLRLQTLPPQL--TPNDGLLLNNPHNPT 161 (360)
T ss_pred HHHHhC-CCCeEEEECCCcH---HHHHHHHHcCC--eEEEEecccccCCcccccCHHHHHHhc--cCCCEEEEeCCCCCC
Confidence 988865 6899997765544 44455566777 44444554322 24566665443 24577777777777
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---CC--CcEEEecCCccCCCCCe---eEEEEechhHHHH
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---PF--ADFITSTTHKSLRGPRG---GFILMKKKYKKII 249 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l 249 (1342)
...+.++|.++|+++++ +|+||+|...... +...+.. +. .-++++||||.| |.+| ||+++++++++.+
T Consensus 162 G~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~-~~~~s~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~~v~~~~~~~~~ 238 (360)
T PRK07392 162 GKLWSREAILPLLEQFAL-VVVDEAFMDFLPP-DAEQSLIPCLAEYPNLIILRSLTKFY-SLPGLRLGYAIAHPDRLQRW 238 (360)
T ss_pred CCCcCHHHHHHHHHHCCE-EEEECchhhhccC-ccccchHHHhhcCCCEEEEEechhhh-cCCchheeeeeCCHHHHHHH
Confidence 44488999999999985 6679998754332 2211111 11 247889999999 7667 9999999888887
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHH
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGK 328 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~ 328 (1342)
......+ +.+...+.++..++.+ ..+.+...+.+.++++++.+.|++. |+.+. +.+++++|++++. .+.+
T Consensus 239 ~~~~~~~---~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~--~~~~~fl~~~~~~--~~~~ 309 (360)
T PRK07392 239 QQWRDPW---PVNGLAAAAAIAALAD--RDFQQQTWAWLPPAREALFQGLASLPGLTPL--PSAANFLLVQSQG--SALQ 309 (360)
T ss_pred HhhCCCC---CCCHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC--CCCCCEEEEEcCC--CHHH
Confidence 6543222 2334455555444432 2355556677888899999999875 66653 3567889988764 3557
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
+...+++++||.+.++..++... .+++|++++...
T Consensus 310 l~~~ll~~~gv~v~pg~~f~~~~----~~~iRi~~~~~~ 344 (360)
T PRK07392 310 LQEKLLQQHRILIRDCLSFPELG----DRYFRVAVRTEA 344 (360)
T ss_pred HHHHHHhhCCEEEEeCCCCCCCC----CCEEEEEeCCHH
Confidence 77788888899999886554221 357999988743
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.7e-17 Score=195.35 Aligned_cols=264 Identities=16% Similarity=0.160 Sum_probs=173.8
Q ss_pred ecCCCCcHHHHHHHhHHHH--hccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc-
Q psy13354 34 ASENYTSLAVMEAQGTLLT--NKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV- 109 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~--~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al- 109 (1342)
++..++++.+++++.+.+. +.+ +.+.+..........+..+.+++.+++++|.+ +.+++++|||+|+..++.++
T Consensus 10 a~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~ 87 (404)
T PRK14012 10 SATTPVDPRVAEKMMPYLTMDGTF--GNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAA 87 (404)
T ss_pred cCCCCCCHHHHHHHHHHHHhcccC--cCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHH
Confidence 4456778889999888774 233 22222111111111244555777999999987 44666669999999888776
Q ss_pred ---cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC-CCCC-cccCHH
Q psy13354 110 ---LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA-SAYS-QYIDFE 184 (1342)
Q Consensus 110 ---~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~-s~~~-~~~~l~ 184 (1342)
..+||+|++.+..+++....+..+...|+ +++.++.++++.+|+++++++++++ +++++++. ++++ ...|++
T Consensus 88 ~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~--~~~~v~~~~~g~~d~~~l~~~i~~~-t~lv~~~~~~n~tG~~~~~~ 164 (404)
T PRK14012 88 HFYQKKGKHIITSKTEHKAVLDTCRQLEREGF--EVTYLDPQSNGIIDLEKLEAAMRDD-TILVSIMHVNNEIGVIQDIA 164 (404)
T ss_pred HhhcCCCCEEEEecCccHHHHHHHHHHHhCCC--EEEEEccCCCCcCCHHHHHHhcCCC-CEEEEEECcCCCccchhhHH
Confidence 37899999888777665555555555576 4455566677889999999999765 45555544 4444 445999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC------Ccc
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------PGI 257 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------~~~ 257 (1342)
+|.++|+++|++|++|++|+.|...... . ...+|++++|+||.+ ||.| |+++.+++....+..... .+.
T Consensus 165 ~I~~la~~~g~~vivD~a~~~g~~~~~~--~-~~~~D~~~~s~~K~~-gp~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~ 240 (404)
T PRK14012 165 AIGEICRERGIIFHVDAAQSVGKVPIDL--S-KLKVDLMSFSAHKIY-GPKGIGALYVRRKPRVRLEAQMHGGGHERGMR 240 (404)
T ss_pred HHHHHHHHcCCEEEEEcchhcCCcccCc--c-cCCCCEEEEehhhcc-CCCceEEEEEecCCCCCCCceecCCCccCCcc
Confidence 9999999999999999999877652111 0 113799999999977 7877 888887654322221101 122
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEe
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIV 307 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~ 307 (1342)
.++++.+...++..++.... .+.....++..+.++++.+.|.+. ++.+.
T Consensus 241 ~gt~~~~~~~~l~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~ 290 (404)
T PRK14012 241 SGTLPTHQIVGMGEAARIAK-EEMATENERIRALRDRLWNGIKDIEEVYLN 290 (404)
T ss_pred CCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 34455555555555544333 255667788899999999998874 45543
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=191.65 Aligned_cols=252 Identities=9% Similarity=0.028 Sum_probs=174.5
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHcc-CCCCEEEEeeccCCccchhhHHhhhCCce
Q psy13354 64 YYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVL-NPGDTIMGMSLQEGGHLTHGMMLNMSGKW 139 (1342)
Q Consensus 64 ~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~-~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~ 139 (1342)
.|+...+..+|++++++++.+.+|.+ +.+++++|+++|+..++.+++ +|||+|+++.+.++.+ ...+...|.
T Consensus 102 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y---~~~~~~~g~- 177 (407)
T PLN02368 102 AYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLY---SATISLLGG- 177 (407)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccH---HHHHHHcCC-
Confidence 45666677789998888888876743 455566578889999999997 7999999877555544 445566676
Q ss_pred eEEEEecCC--CCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhh
Q psy13354 140 FNSICYGLN--KKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGL 207 (1342)
Q Consensus 140 ~~~v~~~~~--~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~ 207 (1342)
++++++.+ ++|.+|++.+++.+++. +++++++++|+|| +...+++|+++|++||++||+||+|....
T Consensus 178 -~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~ 256 (407)
T PLN02368 178 -TLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNI 256 (407)
T ss_pred -EEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 45555554 45889999999988741 4566666666666 33378999999999999999999998765
Q ss_pred hhcC-CCCCCC----------C-C-CcEEEecCCccCCCCCe---eEEEE---echhHHHHhhccCCccccCCcHHHHHH
Q psy13354 208 IAAG-EYPNPV----------P-F-ADFITSTTHKSLRGPRG---GFILM---KKKYKKIINSAVFPGIQGGPLMHVIAA 268 (1342)
Q Consensus 208 ~~~~-~~~~~l----------~-~-~Divv~S~sK~l~gp~G---G~iv~---~~~l~~~l~~~~~~~~~~~~~~~~~~A 268 (1342)
+... .+.+.. . . ..++++||||.|.|++| ||+++ ++++++.+.... .. ..+++.+.+.+
T Consensus 257 y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~-~~-~~~~~~~~Q~a 334 (407)
T PLN02368 257 YQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA-SI-ALSPNVSGQIF 334 (407)
T ss_pred cCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHh-cc-cCCCCcHHHHH
Confidence 5332 222211 0 1 24778999999844556 99994 778888877642 22 22344566666
Q ss_pred HHHHHHHhc---------cchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC
Q psy13354 269 KAVAFKEVL---------KPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 269 aa~al~~~l---------~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
+..++.... .+..+++.+.+.++++.+.+.|.+. |+.+. .+.+++++|.+++-+
T Consensus 335 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~-~P~Gafy~~~~i~lp 398 (407)
T PLN02368 335 MGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCN-FTEGAMYSFPQIKLP 398 (407)
T ss_pred HHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeC-CCCeeeEeccCCCCC
Confidence 665653210 0122346788899999999999986 77764 367889999776543
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=187.64 Aligned_cols=289 Identities=14% Similarity=0.015 Sum_probs=184.9
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
..+.+..|+|++++. ..+ +.| +. +...+|.+ .+++++|.+ ..+++++|+++++..++
T Consensus 17 ~~i~l~~Nenp~~~~------~~~-~~Y----p~-------~~~~~lr~----~ia~~~~~~~~~I~it~Gs~~~l~~~~ 74 (332)
T PRK06425 17 RIIDFSANINDFMDI------GDI-SIY----PE-------ISYTDIED----QIKIYTQGLKIKVLIGPGLTHFIYRLL 74 (332)
T ss_pred CEEEeccccCCCcCh------hhc-ccC----cC-------cCHHHHHH----HHHHHhCCCcceEEECCCHHHHHHHHH
Confidence 568899999988521 111 122 21 11234444 889999987 44555657777998888
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----ccc
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-----QYI 181 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~ 181 (1342)
. +++||+ |+++. |++..+...+...|. ++++++.++ +.+|++.++ ..+++++++++++|| ...
T Consensus 75 ~-~~~~~~-vv~~~---P~y~~y~~~~~~~G~--~v~~vp~~~-~~~~~~~l~----~~~~k~v~l~nP~NPTG~~~s~~ 142 (332)
T PRK06425 75 S-YINVGN-IIIVE---PNFNEYKGYAFTHGI--RISALPFNL-INNNPEILN----NYNFDLIFIVSPDNPLGNLISRD 142 (332)
T ss_pred H-HhCCCc-EEEeC---CChHHHHHHHHHcCC--eEEEEeCCc-ccCcHHHHh----hcCCCEEEEeCCCCCcCCccCHH
Confidence 6 567775 55445 444455566677787 445555543 334555444 235677777777777 223
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCC-CCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCC
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGE-YPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~-~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~ 255 (1342)
.+++|+++|+++|++||+||+|......... .....+. ..++++||||++ |.+| ||+++++++++.+.....+
T Consensus 143 ~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~l~GlRiGy~v~~~~li~~l~~~~~~ 221 (332)
T PRK06425 143 SLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKIL-GIPSLRIGYIATDDYNMKISRKITEP 221 (332)
T ss_pred HHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhc-CCchhhheeeecCHHHHHHHHHcCCC
Confidence 5788899999999999999998754331100 0001111 247889999999 7777 9999999999888875444
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
+..+ .+...+ . .... ...+.+..++.+.++++++.+.|.+.|+.+.. ++.++++|+.++ .+.++...+++
T Consensus 222 ~~~~---~~~~~~-l-~~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~-~~~g~f~~~~~~---~~~~~~~~l~~ 291 (332)
T PRK06425 222 WSVC---DPAIDF-I-RSID-LDYVAKHSLDIMENERSYLINNLEAMGFRAAG-DPSANFITFMIP---DAHDFYSYLLK 291 (332)
T ss_pred CccC---HHHHHH-H-HHhh-hHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC-CCCceEEEEEcC---CHHHHHHHHHH
Confidence 3222 111111 1 1111 12234567888999999999999998887643 346778999876 34567777665
Q ss_pred HCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+||.+.++..++..+ .+++|++++..
T Consensus 292 -~gi~v~~~~~f~~~~----~~~iRis~~~~ 317 (332)
T PRK06425 292 -NGILVRLLDDYECLG----EQYIRIAIRRR 317 (332)
T ss_pred -CCeEEEECCCCCCCC----CCEEEEEeCCH
Confidence 599999876553221 35799998864
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-17 Score=189.36 Aligned_cols=201 Identities=19% Similarity=0.255 Sum_probs=159.0
Q ss_pred CCccccccchhhHHHHHHHHHc----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 388 SNFNTLIGQNHISKSLINALDK----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 388 ~~f~~lvGq~~~~~~L~~~l~~----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
++|++++||+++++.|..++.. +..++.++|+||||+|||++|+.+++.+++
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------------------------ 56 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV------------------------ 56 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC------------------------
Confidence 4799999999999999888862 233445899999999999999999999863
Q ss_pred cCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcC------------------
Q psy13354 464 NGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEE------------------ 525 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~------------------ 525 (1342)
++...+.+......++...+... +...+++|||+|.++....+.|+..+++
T Consensus 57 -----~~~~~~~~~~~~~~~l~~~l~~~------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~ 125 (305)
T TIGR00635 57 -----NLKITSGPALEKPGDLAAILTNL------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRL 125 (305)
T ss_pred -----CEEEeccchhcCchhHHHHHHhc------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceee
Confidence 12222222222223444444332 3456999999999998888888877653
Q ss_pred CCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHH
Q psy13354 526 PPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQA 604 (1342)
Q Consensus 526 p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl 604 (1342)
+.+..++|.+++.+.++.+++.+|| ..+.|.+++.+++.+++.+.+...++.+++++++.|++.++|++|.+.+.++++
T Consensus 126 ~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~ 205 (305)
T TIGR00635 126 DLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRV 205 (305)
T ss_pred cCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 2234788999999999999999999 678999999999999999999999999999999999999999999999999987
Q ss_pred Hhhc----CCCCCHHHHHHHhcc
Q psy13354 605 INYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 605 ~~~~----~~~It~e~V~~~v~~ 623 (1342)
..++ ...|+.++|++.+..
T Consensus 206 ~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 206 RDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHH
Confidence 6553 245899998877744
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.1e-16 Score=186.50 Aligned_cols=321 Identities=15% Similarity=0.087 Sum_probs=198.0
Q ss_pred ceeee-ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 29 NIELI-ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 29 ~i~l~-a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
.+-|. ++..+.|+.+.+++.+.+. .+..+...+ ++.+......+.+++++ + +++|++ +.+++++|+|+++..++
T Consensus 28 ~iyld~~a~g~~p~~v~~a~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~ 103 (406)
T TIGR01814 28 VIYLDGNSLGLMPKAARNALKEELD-KWAKIAIRG-HNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLL 103 (406)
T ss_pred cEEecCCCcCcCcHHHHHHHHHHHH-HHHHhhhcc-CccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHH
Confidence 35455 3445666668888877663 332221111 11111122233333333 4 788987 56777779999999999
Q ss_pred HHccCCCC---EEEEeeccCCccchhhH-HhhhCCceeE--EEEecCCCCCCCCHHHHHHHHHh--cCCeEEEEcC-CCC
Q psy13354 107 FSVLNPGD---TIMGMSLQEGGHLTHGM-MLNMSGKWFN--SICYGLNKKEKIDYKKVEYLAKK--NKPKLIIAGA-SAY 177 (1342)
Q Consensus 107 ~al~~pGD---~Vlv~~~~~~~~~s~~~-~~~~~g~~~~--~v~~~~~~~~~id~e~Le~~i~~--~~~~liv~~~-s~~ 177 (1342)
.+++.+|+ .|++...+|++....+. .+...|..+. .+.++.+.++.+|++++++.+.. .++++++++. ++.
T Consensus 104 ~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~ 183 (406)
T TIGR01814 104 ASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYY 183 (406)
T ss_pred HHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccc
Confidence 98876653 56766666655333222 3345566442 23445555678899999988853 2345555544 443
Q ss_pred C-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC--
Q psy13354 178 S-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF-- 254 (1342)
Q Consensus 178 ~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~-- 254 (1342)
+ ...|+++|+++|+++|+++++|++|++|...-+.. ...+|++++|.|||++||+||+++..++....+.....
T Consensus 184 tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~---~~gvD~~~~s~hK~l~g~pG~~l~v~~~~~~~~~p~~~g~ 260 (406)
T TIGR01814 184 TGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLH---DWGVDFACWCTYKYLNAGPGAGAFVHEKHAHTERPRLAGW 260 (406)
T ss_pred cceecCHHHHHHHHHHcCCEEEEEcccccCCcccccc---cCCCCEEEEcCccccCCCCCeEEEEehhhhhhcCCCCCcc
Confidence 3 55599999999999999999999999987621110 11379999999999976667555554433322322111
Q ss_pred --------------------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-----CcEEeeC
Q psy13354 255 --------------------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-----GIRIVSG 309 (1342)
Q Consensus 255 --------------------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-----g~~~~~~ 309 (1342)
.+..++++.+...++..++......+.+...++..++++++.+.|.+. |+++..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~ 340 (406)
T TIGR01814 261 WGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITP 340 (406)
T ss_pred cCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCC
Confidence 111355667777777777766655578888999999999999999874 3766553
Q ss_pred CC---CCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc-ccccc
Q psy13354 310 GT---KSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS-AITTR 369 (1342)
Q Consensus 310 ~~---~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~-~~~t~ 369 (1342)
.. ...++.+.++ ....++...| .++||.+... . .+.+|+|++ .+++.
T Consensus 341 ~~~~~r~~~v~~~~~--~~~~~~~~~L-~~~gi~v~~~-------~---~~~iRiS~~~~~nt~ 391 (406)
T TIGR01814 341 RDHAQRGCQLSLTHP--VPGKAVFQAL-IKRGVIGDKR-------E---PSVIRVAPVPLYNTF 391 (406)
T ss_pred CChhhcCCeEEEEec--CCHHHHHHHH-HHCCEEEecc-------C---CCeEEEechhccCCH
Confidence 21 1345666655 2234555555 5569987521 1 246999984 56653
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.1e-16 Score=184.45 Aligned_cols=287 Identities=16% Similarity=0.129 Sum_probs=184.1
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCEE
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDTI 116 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~V 116 (1342)
.++...++++.+.+.... +..++...++++ .+++++|.+++++++ ||++|+..++.++ ++|||+|
T Consensus 7 ~~~~~~~~~v~~~~~~~~---------~~~g~~~~~le~----~la~~~g~~~~v~~~-sgt~al~~~l~al~~~~Gd~V 72 (380)
T TIGR03588 7 SIDQDDIDAVVEVLKSDF---------LTQGPTVPAFEE----ALAEYVGAKYAVAFN-SATSALHIACLALGVGPGDRV 72 (380)
T ss_pred CCCHHHHHHHHHHHhcCC---------ccCChhHHHHHH----HHHHHHCCCeEEEEc-CHHHHHHHHHHHcCCCCCCEE
Confidence 345556667666664211 222344455555 899999998887777 9999999999999 8999999
Q ss_pred EEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHh---cCCeEEEEcCCCCCcccCHHHHHHHHHH
Q psy13354 117 MGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKK---NKPKLIIAGASAYSQYIDFERFYHIAKN 192 (1342)
Q Consensus 117 lv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~---~~~~liv~~~s~~~~~~~l~~I~~la~~ 192 (1342)
+++++.+. +....+...|. +++.++.+ +++.+|++++++.+++ .++++++.++ .++...++++|.++|++
T Consensus 73 iv~~~~~~---~~~~~~~~~G~--~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~-~~G~~~~~~~i~~l~~~ 146 (380)
T TIGR03588 73 WTTPITFV---ATANCALYCGA--KVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD-FAGKSVDMQAIAALAKK 146 (380)
T ss_pred EeCCcchH---HHHHHHHHcCC--EEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC-CCCccCCHHHHHHHHHH
Confidence 98775553 33445566777 45555654 4678999999999983 2445555432 23455689999999999
Q ss_pred cCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCeeEEEEec-hhHHHHhhccCCc-------------
Q psy13354 193 INSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRGGFILMKK-KYKKIINSAVFPG------------- 256 (1342)
Q Consensus 193 ~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~GG~iv~~~-~l~~~l~~~~~~~------------- 256 (1342)
||++||+|++|++|....+...+.....|+.++|+| |+++++.||++++++ ++.+.++......
T Consensus 147 ~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 226 (380)
T TIGR03588 147 HGLKIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDE 226 (380)
T ss_pred cCCEEEEECCCcccCccCCEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCccccccccc
Confidence 999999999999886544433333224599999987 999777888888764 5555544311100
Q ss_pred ----------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCC----CeEEEEEcc
Q psy13354 257 ----------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTK----SHIILVDLR 321 (1342)
Q Consensus 257 ----------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~----~~~v~i~~~ 321 (1342)
.++..++...++...+.++ .++...++.+++++++.+.|.+.+ +.+...+.+ .+..++.+.
T Consensus 227 ~~~~~~~~~~g~n~~m~~l~aa~g~~qL~----~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~ 302 (380)
T TIGR03588 227 GPWYYEQQELGFNYRMTDIQAALGLSQLK----KLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLD 302 (380)
T ss_pred CcceeeeeccccccCccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEEC
Confidence 0111122333333333222 356677888999999999998864 332221111 123334443
Q ss_pred C-CCCCHHHHHHHHHHCCceeeeccCCC
Q psy13354 322 N-KKITGKIAESILESANIICNKNSIPN 348 (1342)
Q Consensus 322 ~-~~~~~~~~~~ll~~~GI~v~~~~~p~ 348 (1342)
. .+.+.+.+...|+++||.+...+.|.
T Consensus 303 ~~~~~~r~~l~~~L~~~gI~~~~~~~~~ 330 (380)
T TIGR03588 303 QEFGCTRKEVFEALRAAGIGVQVHYIPV 330 (380)
T ss_pred CcCCCCHHHHHHHHHHCCCCcccCCccc
Confidence 2 22345556666677799998765554
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-16 Score=183.93 Aligned_cols=290 Identities=14% Similarity=0.112 Sum_probs=195.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhCC---CCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCcee
Q psy13354 64 YYGGCKFIDLIEKIAINRLKKIFNA---EAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWF 140 (1342)
Q Consensus 64 ~~~~~~~~~~Le~~~~~~la~~~g~---~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~ 140 (1342)
.+....+..++++.+++.+...++. ...+++++||++++..++.++..+||+|+++. +++.++...+...|.
T Consensus 31 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~---~~~~~~~~~~~~~~~-- 105 (350)
T cd00609 31 GYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPD---PTYPGYEAAARLAGA-- 105 (350)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcC---CCchhHHHHHHHCCC--
Confidence 3455667778999888888777652 23455555999999999999999999999766 445555566667776
Q ss_pred EEEEecCCCCCCCCH--HHHHHHHHhcCCeEEEEcCCCCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCC
Q psy13354 141 NSICYGLNKKEKIDY--KKVEYLAKKNKPKLIIAGASAYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEY 213 (1342)
Q Consensus 141 ~~v~~~~~~~~~id~--e~Le~~i~~~~~~liv~~~s~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~ 213 (1342)
.++.++.++++..+. +.++....+ .++++++++++++ ...+ +.+|+++|+++|+++|+|++|+.+.......
T Consensus 106 ~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~ 184 (350)
T cd00609 106 EVVPVPLDEEGGFLLDLELLEAAKTP-KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPP 184 (350)
T ss_pred EEEEEecccccCCccCHHHHHhhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCccc
Confidence 444445555554444 556655443 4566665555554 2334 5666699999999999999997655432221
Q ss_pred ---CCC-CCCCcEEEecCCccCC-CC-CeeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHH
Q psy13354 214 ---PNP-VPFADFITSTTHKSLR-GP-RGGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQK 286 (1342)
Q Consensus 214 ---~~~-l~~~Divv~S~sK~l~-gp-~GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~ 286 (1342)
... ....|++++|+||+++ ++ ..|++++++ ++.+.+...... ...+++.+.+.++..++.... ++.+...+
T Consensus 185 ~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 262 (350)
T cd00609 185 PALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPY-TTSGPSTLSQAAAAAALDDGE-EHLEELRE 262 (350)
T ss_pred ccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHh-cccCCChHHHHHHHHHHhCcH-HHHHHHHH
Confidence 111 1125889999999994 22 239999999 788888764332 233444555555554444332 46778889
Q ss_pred HHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 287 QVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 287 ~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++.++++++.+.|.+.+......+..++++|+.++.. .+.+.+.+++.++||.+.+...+.... ..++|++++..
T Consensus 263 ~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~gi~i~~~~~~~~~~----~~~iRi~~~~~ 337 (350)
T cd00609 263 RYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG-DDEEFLERLLLEAGVVVRPGSAFGEGG----EGFVRLSFATP 337 (350)
T ss_pred HHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCC-ChHHHHHHHHHhCCEEEecccccccCC----CCeEEEEeeCC
Confidence 9999999999999997654323345678888887654 345677888888899998765444211 35799998886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >KOG1357|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-17 Score=182.34 Aligned_cols=318 Identities=22% Similarity=0.261 Sum_probs=233.6
Q ss_pred eeecCCCCcHH-----HHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHH
Q psy13354 32 LIASENYTSLA-----VMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAV 105 (1342)
Q Consensus 32 l~a~~n~l~~~-----v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~a 105 (1342)
...+-||++.+ +.++..+.+. .|.....+++.. +....+.++|+ ..++++|.+++++|. .|...+.+.
T Consensus 140 NlgSYNYLGFa~~~g~ca~~~~~~~~-kygl~~css~~e~G~~~~hkelE~----l~A~f~g~e~a~vF~-mGf~TNs~~ 213 (519)
T KOG1357|consen 140 NLGSYNYLGFAQSVGPCAEASLKSFD-KYGLSRCSSRHEAGTTEEHKELEE----LVARFLGVEDAIVFS-MGFATNSMN 213 (519)
T ss_pred eecccccccccccCCcCChHHHHHHH-HhcccccccchhcccHHHHHHHHH----HHHHhcCCcceEEEe-ccccccccC
Confidence 45667998887 6666566663 676666555554 44555566666 999999999999999 889999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc---------CC--eEEEEcC
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN---------KP--KLIIAGA 174 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~---------~~--~liv~~~ 174 (1342)
+.+++.||.-|+.-...|.... .-++..|+..++. .++ |..++++.+++. +| +++++..
T Consensus 214 ~p~l~~~gsLIiSDelNHaSi~---~GaRLSgAtiRVf--kHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iive 283 (519)
T KOG1357|consen 214 IPSLLGKGSLIISDELNHASLI---TGARLSGATTRVF--RHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICVE 283 (519)
T ss_pred cceeecCCcceeeccccchhee---ccccccCceEEEE--ecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeeec
Confidence 9999999999986554443322 2235566644444 555 666777766531 12 4555555
Q ss_pred CCCC---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-----CCCCCCC-CCcEEEecCCccCCCCCeeEEEEechh
Q psy13354 175 SAYS---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-----EYPNPVP-FADFITSTTHKSLRGPRGGFILMKKKY 245 (1342)
Q Consensus 175 s~~~---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-----~~~~~l~-~~Divv~S~sK~l~gp~GG~iv~~~~l 245 (1342)
+.++ ...++.++++++++|.++|+.||||+.|+.+.. .+..+-+ .+|+++++|.|.+ |..||++.+++++
T Consensus 284 giysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSf-ga~GGyiagsk~l 362 (519)
T KOG1357|consen 284 GIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSF-GAAGGYIAGSKEL 362 (519)
T ss_pred cceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhc-ccccceecCcHHH
Confidence 5554 556999999999999999999999999988542 2222222 3789999999999 8889999999999
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEc
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-----KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-----~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~ 320 (1342)
++.++.......+.++.+|..++......... ....++..+++.+|+.+++..|.+.||-+.. ..+++++++-+
T Consensus 363 id~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG-~~dSpVvplll 441 (519)
T KOG1357|consen 363 IDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYG-NNDSPVVPLLL 441 (519)
T ss_pred HhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEec-CCCCCcceeee
Confidence 99999877777777777777776655555553 2346778899999999999999999988754 45667777666
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGF 371 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~ 371 (1342)
-.+..-..+-++++++ +|.+....+|..|- ..++.|++.++.++.++
T Consensus 442 ~~~~k~~~f~r~~l~~-nigvVvvgfPatpl---~e~r~R~c~Sa~ht~e~ 488 (519)
T KOG1357|consen 442 YGPAKIVAFSREMLER-NIGVVVVGFPATPL---LESRARFCLSASHTKED 488 (519)
T ss_pred cCcccccHHHHHHHhc-CceEEEEeCCCchH---HHhHHHhhhcccccHHH
Confidence 5555455777788876 88888777777653 36789999999998654
|
|
| >PRK06581 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-16 Score=166.93 Aligned_cols=181 Identities=19% Similarity=0.215 Sum_probs=154.4
Q ss_pred HHHHHHHHHcCCCCcEEEEEccCc-ccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccC--
Q psy13354 400 SKSLINALDKKRLHHAYLFTGTRG-VGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA-- 476 (1342)
Q Consensus 400 ~~~L~~~l~~~~~~~~~Ll~G~~G-~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~-- 476 (1342)
++.+.+.+++++++|+|||+|..+ ++|..++..+++.+.|. .+..+.|||+..+...
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~--------------------~i~~~~HPD~~~I~pe~~ 61 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKN--------------------SIPLENNPDYHFIARETS 61 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhcc--------------------CcccCCCCCEEEEecccc
Confidence 468899999999999999999997 99999999999998753 3567889999988643
Q ss_pred -----CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEE
Q psy13354 477 -----STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCI 551 (1342)
Q Consensus 477 -----~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~ 551 (1342)
..-+++++|++.+.+...|..+++||++|++++.|+.++.|+|||+||+||++++||++|+++..+++||+|||+
T Consensus 62 ~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq 141 (263)
T PRK06581 62 ATSNAKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCF 141 (263)
T ss_pred ccccCCcccHHHHHHHHHHHhhCcccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceE
Confidence 245789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHH
Q psy13354 552 QFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQ 603 (1342)
Q Consensus 552 ~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~k 603 (1342)
.+.|..+......++....+... .+..-++.|.+....|......-.+.
T Consensus 142 ~i~~~~p~~~~~~e~~~~~~~p~---~~~~~l~~i~~~~~~d~~~w~~~~~~ 190 (263)
T PRK06581 142 KINVRSSILHAYNELYSQFIQPI---ADNKTLDFINRFTTKDRELWLDFIDN 190 (263)
T ss_pred EEeCCCCCHHHHHHHHHHhcccc---cccHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999988887776554433 34455888888766666655544443
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=189.66 Aligned_cols=267 Identities=15% Similarity=0.168 Sum_probs=179.4
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccC------------CCC--EEEEeeccCCccc
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLN------------PGD--TIMGMSLQEGGHL 127 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~------------pGD--~Vlv~~~~~~~~~ 127 (1342)
|...+...++++++++++++++|.+ ..+++++|||+|+..++.++.. +++ .|+++.. .|.
T Consensus 30 y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~h~ 106 (345)
T cd06450 30 WDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQ---AHV 106 (345)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCc---chh
Confidence 5556677899999999999999975 3456666999999999988742 333 5665553 344
Q ss_pred hhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEE
Q psy13354 128 THGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVD 200 (1342)
Q Consensus 128 s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvD 200 (1342)
+........|. +++.++.++++.+|++++++.+++. ++++++++.++++ ...++++|+++|+++|+++++|
T Consensus 107 ~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD 184 (345)
T cd06450 107 SVEKAAAYLDV--KVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVD 184 (345)
T ss_pred HHHHHHHHHhc--CeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEe
Confidence 44444455565 4555566666789999999999761 3455555444433 5559999999999999999999
Q ss_pred cccchhhhhcCCCC---CCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHh
Q psy13354 201 MAHYAGLIAAGEYP---NPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV 276 (1342)
Q Consensus 201 ea~~~g~~~~~~~~---~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~ 276 (1342)
++|+.+........ .....+|++++|+||++++|.| |+++.+ ..++..++...
T Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-----------------------~~~~~~~l~~l 241 (345)
T cd06450 185 AAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR-----------------------ALKLWATLRRF 241 (345)
T ss_pred chhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-----------------------HHHHHHHHHHH
Confidence 99987765321111 1123479999999999977777 776555 22233333333
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC----CCCHHHHHHHHHHCCceeeeccCCCCCC
Q psy13354 277 LKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK----KITGKIAESILESANIICNKNSIPNDPE 351 (1342)
Q Consensus 277 l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~----~~~~~~~~~ll~~~GI~v~~~~~p~~~~ 351 (1342)
...++++..++..++++++.+.|.+. ++++.. ++..+++.+.+++. ..+.++...+.+ +|+++.+...+.
T Consensus 242 ~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~-~g~~~~~~~~~~--- 316 (345)
T cd06450 242 GRDGYGEHIDRIVDLAKYLAELIRADPGFELLG-EPNLSLVCFRLKPSVKLDELNYDLSDRLNE-RGGWHVPATTLG--- 316 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CCceeEEEEEECCcchhhHHHHHHHHHHHh-cCCEEEEeeEEC---
Confidence 33467788899999999999999886 576644 33466777776642 223455555554 455444322111
Q ss_pred Cccccccccccccccc
Q psy13354 352 KPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 352 ~~~~~~~lRi~~~~~~ 367 (1342)
....+|++++..+
T Consensus 317 ---~~~~lRis~~~~~ 329 (345)
T cd06450 317 ---GPNVLRFVVTNPL 329 (345)
T ss_pred ---CeEEEEEEecCCC
Confidence 1357999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=187.76 Aligned_cols=298 Identities=13% Similarity=0.127 Sum_probs=193.9
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..+++.. ++.+.+++.+.+.. . ..|+ ..+..++++ .++++++.+ +.+++++|+++++..
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~y~-------~~g~~~lr~----~ia~~~~~~~~~I~~~~G~~~~l~~ 89 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAAG-V-NRYP-------DMGAVELRA----ALAEHLGVPPEHVAVGCGSVALCQQ 89 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHh-c-CcCC-------CCcHHHHHH----HHHHHhCcCHHHEEECCCHHHHHHH
Confidence 457788776654 33488888776632 1 1222 223445555 777888876 456666466668888
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.++++|||+|+++.+.++ .........|. +++.++.++++.+|++.+++.+++ ++++++++++++| ...+
T Consensus 90 ~~~~~~~~gd~Vli~~p~y~---~~~~~~~~~g~--~~~~v~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~ 163 (352)
T PRK03321 90 LVQATAGPGDEVIFAWRSFE---AYPILVQVAGA--TPVQVPLTPDHTHDLDAMAAAITD-RTRLIFVCNPNNPTGTVVT 163 (352)
T ss_pred HHHHhcCCCCEEEeCCCCHH---HHHHHHHHcCC--EEEEccCCCCCCCCHHHHHHhhcc-CCCEEEEeCCCCCcCCCcC
Confidence 88888999999997654433 23333455566 556666665678899999998876 4556555555665 4448
Q ss_pred HHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC---C--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhc
Q psy13354 183 FERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP---F--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSA 252 (1342)
Q Consensus 183 l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~---~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~ 252 (1342)
.++|.++|+. +|++||+|++|....+.. .....+. . -.++++|+||.| |.+| ||+++++++++.+...
T Consensus 164 ~~~l~~l~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~v~~~~~~~~~~~~ 241 (352)
T PRK03321 164 PAELARFLDAVPADVLVVLDEAYVEYVRDD-DVPDGLELVRDHPNVVVLRTFSKAY-GLAGLRVGYAVGHPEVIAALRKV 241 (352)
T ss_pred HHHHHHHHHhCCCCeEEEEechHHHhccCc-CCCcHHHHHhhCCCEEEEecchHHh-hhHHHhhhhhcCCHHHHHHHHHh
Confidence 9999999987 599999999987544422 1111111 1 247789999999 6666 9999999999988764
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
...+ +.+.+.+.++..++.. .. .+.+..+++.++++.+.+.|.+.|+.+. +.+++++|+.++. .+.++...
T Consensus 242 ~~~~---~~s~~~q~~a~~~l~~-~~-~~~~~~~~~~~~r~~~~~~L~~~~~~~~--~~~g~~i~i~l~~--~~~~~~~~ 312 (352)
T PRK03321 242 AVPF---SVNSLAQAAAIASLAA-ED-ELLERVDAVVAERDRVRAALRAAGWTVP--PSQANFVWLPLGE--RTADFAAA 312 (352)
T ss_pred cCCC---CCCHHHHHHHHHHhcC-HH-HHHHHHHHHHHHHHHHHHHHHHCCCccC--CCCCCEEEEeCCC--CHHHHHHH
Confidence 3322 2234444444434332 22 3344455666777888899988887652 3457889998753 23455655
Q ss_pred HHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+ +++||.+.++ + ..++|++++..
T Consensus 313 l-~~~gI~v~~~---~-------~~~iRi~~~~~ 335 (352)
T PRK03321 313 A-AEAGVVVRPF---A-------GEGVRVTIGAP 335 (352)
T ss_pred H-HHCCEEEEcc---C-------CCcEEEeeCCH
Confidence 5 5679999752 1 23599998654
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-16 Score=185.32 Aligned_cols=301 Identities=13% Similarity=0.074 Sum_probs=192.0
Q ss_pred ceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHH
Q psy13354 29 NIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAV 105 (1342)
Q Consensus 29 ~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~a 105 (1342)
.+.+..+++.. ++.+.+++.+.+.. ...|+ . ....++++ .++++++.+ +.+++++|+++++..+
T Consensus 21 ~~~l~~~~~~~~~p~~~~~a~~~~~~~--~~~Y~------~-~~~~~lr~----~ia~~~~~~~~~i~it~Ga~~~l~~~ 87 (354)
T PRK06358 21 ILDFSANINPLGVPESLKQAITENLDK--LVEYP------D-PDYLELRK----RIASFEQLDLENVILGNGATELIFNI 87 (354)
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHh--hhcCC------C-ccHHHHHH----HHHHHhCCChhhEEECCCHHHHHHHH
Confidence 47777777654 45588887776532 11222 1 12345555 777777776 4555665888899999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS----- 178 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~----- 178 (1342)
+.++ .+ +.|++..+.++. +.......|.. ++.++.+ .++.+| +++.+.+.+ +++++++++|+||
T Consensus 88 ~~~~-~~-~~v~i~~P~y~~---~~~~~~~~g~~--~~~~~~~~~~~~~~d-~~~~~~~~~-~~~~v~~~~P~NPtG~~~ 158 (354)
T PRK06358 88 VKVT-KP-KKVLILAPTFAE---YERALKAFDAE--IEYAELTEETNFAAN-EIVLEEIKE-EIDLVFLCNPNNPTGQLI 158 (354)
T ss_pred HHHh-CC-CcEEEecCChHH---HHHHHHHcCCe--eEEEeCccccCCCcc-HHHHHhhcc-CCCEEEEeCCCCCCCCcc
Confidence 8886 44 678866655543 34444566764 4444544 346788 666555544 4666655566666
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC---CCC--CcEEEecCCccCCCCCe---eEEEEe-chhHHHH
Q psy13354 179 QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP---VPF--ADFITSTTHKSLRGPRG---GFILMK-KKYKKII 249 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~---l~~--~Divv~S~sK~l~gp~G---G~iv~~-~~l~~~l 249 (1342)
....+++|+++|++||++||+||+|....+.. ...+. .+. .-++++||||.+ |.+| ||++++ +.+++.+
T Consensus 159 ~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~-~~~~~~~~~~~~~~vi~~~S~SK~~-gl~G~RiG~lv~~~~~~~~~~ 236 (354)
T PRK06358 159 SKEEMKKILDKCEKRNIYLIIDEAFMDFLEEN-ETISMINYLENFKNLIIIRAFTKFF-AIPGLRLGYGLTSNKNLAEKL 236 (354)
T ss_pred CHHHHHHHHHHHHhcCCEEEEeCcccccCCCc-cchhHHHhccCCCCEEEEEechhhc-cCcchhheeeecCCHHHHHHH
Confidence 22258999999999999999999987544322 11111 111 237789999999 7677 999985 5777777
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHH
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGK 328 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~ 328 (1342)
......+ +.+.+.+.++..++.+ ..++++.++.+.++++++.+.|++. |+.+.. +.++++|+.+++ ..+
T Consensus 237 ~~~~~~~---~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~--~~g~f~~~~~~~---~~~ 306 (354)
T PRK06358 237 LQMREPW---SINTFADLAGQTLLDD--KEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYK--PSVNFIFFKLEK---PID 306 (354)
T ss_pred HHhCCCC---cchHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcC--CcceEEEEEcCc---hHH
Confidence 6644332 2223344444444322 1245677888899999999999886 666543 345688998864 256
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++..+++ +||.+.++..++.. ..+++|++++....
T Consensus 307 ~~~~l~~-~gI~v~~~~~f~~~----~~~~iRls~~~~~~ 341 (354)
T PRK06358 307 LRKELLK-KGILIRSCSNYRGL----DENYYRVAVKSRED 341 (354)
T ss_pred HHHHHHH-CCeEEEECCCCCCC----CCCEEEEEeCCHHH
Confidence 7776665 69999987655211 13579999877543
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-16 Score=185.05 Aligned_cols=296 Identities=16% Similarity=0.147 Sum_probs=189.5
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
..+.+..|+|+.+|+..-. ...+ +. |+ .. ...+|++ .+++++|.+ +.+++++|+++++..++
T Consensus 32 ~~~~l~~ne~~~~~~~~~~-~~~~-~~----Yp------~~-~~~~Lr~----aia~~~~~~~~~I~it~Gs~~~i~~~~ 94 (354)
T PRK04635 32 GDIWINANESPFNNEYKLD-LARL-NR----YP------EC-QPPELIN----AYSAYAGVAPEQILTSRGADEAIELLI 94 (354)
T ss_pred CcEEeeCCCCCCCCChhhh-hHHh-cc----CC------CC-CHHHHHH----HHHHHhCcCHHHEEEeCCHHHHHHHHH
Confidence 3478999999877762111 0111 11 22 11 1345555 777888877 55566657888999999
Q ss_pred HHccCCC-CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 107 FSVLNPG-DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 107 ~al~~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
.+++.|| |+|++..+.++ .+.......|. +++.++.++++.+|++.++. + .+++++++++++|| ...+.
T Consensus 95 ~~~~~~g~d~vlv~~P~y~---~y~~~~~~~g~--~v~~v~~~~~~~~~~~~l~~-~--~~~~li~i~nP~NPTG~~~~~ 166 (354)
T PRK04635 95 RAFCEPGQDSIACFGPTYG---MYAISAETFNV--GVKALPLTADYQLPLDYIEQ-L--DGAKLVFICNPNNPTGTVIDR 166 (354)
T ss_pred HHhcCCCCCeEEEcCCChH---HHHHHHHHcCC--EEEEEecCCCCCCCHHHHHh-c--cCCCEEEEeCCCCCCCccCCH
Confidence 9999999 89997665443 33344566677 44555666668889988873 3 35677777777777 44478
Q ss_pred HHHHHHHHHc-CCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCcc
Q psy13354 184 ERFYHIAKNI-NSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 184 ~~I~~la~~~-gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~ 257 (1342)
+++.++++.. +++||+||+|..... ......... ..-+++.||||++ |++| ||+++++++++.+.....++.
T Consensus 167 ~~l~~l~~~~~~~~vivDeay~~~~~-~~s~~~~~~~~~~~iv~~S~SK~~-~l~GlRlG~~i~~~~~~~~l~~~~~~~~ 244 (354)
T PRK04635 167 ADIEQLIEMTPDAIVVVDEAYIEFCP-EYSVADLLASYPNLVVLRTLSKAF-ALAGARCGFTLANEELIEILMRVIAPYP 244 (354)
T ss_pred HHHHHHHHhCCCcEEEEeCchHhhcc-CcchHHHHhhCCCEEEEechHHHh-hhhHHHHhhhhCCHHHHHHHHhhcCCCC
Confidence 8888888764 699999999865321 100000011 1136789999999 7777 999999999888876433332
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
.+.+.+.++..++.+...+..++.++.+.++++++.+.|.+.+ +.+.. +.++++|+.+++ +.++ .+++.+
T Consensus 245 ---~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~--~~g~f~~~~~~~---~~~~-~~~l~~ 315 (354)
T PRK04635 245 ---VPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLE--GNGNYVLAKFDD---VDAV-FKALWD 315 (354)
T ss_pred ---CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceECC--CCCcEEEEECCC---HHHH-HHHHHH
Confidence 2234444444343322112455667788888999999999876 66543 456788888762 3344 556667
Q ss_pred CCceeeeccCCCCCCCccccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+||.+..+..+.. .+++|++++.
T Consensus 316 ~gv~v~~~~~~~~------~~~lRis~~~ 338 (354)
T PRK04635 316 AGIVARAYKDPRL------ANCIRFSFSN 338 (354)
T ss_pred CCEEEEECCCCCC------CCeEEEEeCC
Confidence 7999986432211 3579999764
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-15 Score=179.42 Aligned_cols=274 Identities=17% Similarity=0.157 Sum_probs=191.8
Q ss_pred hHHHHHHHHHHHHHHHhCCC-Cc--eEecCCHHHHHHHHHHHc--cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEE
Q psy13354 70 FIDLIEKIAINRLKKIFNAE-AA--NVQPHSGSQANQAVFFSV--LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSIC 144 (1342)
Q Consensus 70 ~~~~Le~~~~~~la~~~g~~-~~--vi~~~sGs~A~~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~ 144 (1342)
...++|+++++++++++|.+ .. .+++++||+++..++.+. ..++++|+++..+| .+....+...|.....+
T Consensus 62 ~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H---~Sv~ka~~~lg~~~~~V- 137 (380)
T PRK02769 62 NSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTH---YSVSKIARLLRIKSRVI- 137 (380)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCce---ehHHHHHHHcCCCCcee-
Confidence 35678999999999999986 22 256669999998777654 35788999776544 45555666667655544
Q ss_pred ecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCCC--cccCHHHHHHHHHHcC---CEEEEEcccchhhhhcCCCCCCC
Q psy13354 145 YGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAYS--QYIDFERFYHIAKNIN---SYFMVDMAHYAGLIAAGEYPNPV 217 (1342)
Q Consensus 145 ~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~~--~~~~l~~I~~la~~~g---i~LIvDea~~~g~~~~~~~~~~l 217 (1342)
+.+++|.+|++++++++.+. ++.+|+++.+++. ...|+++|+++|++|| +|+++|+||+.+.........++
T Consensus 138 -~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~ 216 (380)
T PRK02769 138 -TSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPF 216 (380)
T ss_pred -ccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccC
Confidence 55568899999999999875 3555555443333 6669999999999998 69999999987665321111122
Q ss_pred C---CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc------cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHH
Q psy13354 218 P---FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA------VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQ 287 (1342)
Q Consensus 218 ~---~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~------~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~ 287 (1342)
+ .+|+++.|.||++++|.| |+++.+++....+... ......|+.+.....+++.++..+..+++++..++
T Consensus 217 d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~ 296 (380)
T PRK02769 217 SFADGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQH 296 (380)
T ss_pred CccCCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 2 479999999999977999 9999998766554321 01122334444566777778777777789999999
Q ss_pred HHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 288 VVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 288 l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
..++++++.+.|.+.|+++...| ..+++.+..+. .++ . + |..+.+. ...+|+++...+
T Consensus 297 ~~~la~~l~~~L~~~g~~~~~~p-~~~~v~f~~~~----~~~----~-~-~w~l~~~-----------~~~~hi~~~~~~ 354 (380)
T PRK02769 297 CLDMAQYAVDRLQANGIPAWRNP-NSITVVFPCPS----ERI----W-K-KWHLATS-----------GNQAHIITMPHH 354 (380)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCC-CceEEEEcCCC----HHH----H-h-CeeEccc-----------CCEEEEEECCCC
Confidence 99999999999999999887643 45555554332 122 1 2 5444422 125899998887
Q ss_pred ccc
Q psy13354 368 TRG 370 (1342)
Q Consensus 368 t~~ 370 (1342)
+.+
T Consensus 355 ~~~ 357 (380)
T PRK02769 355 NKQ 357 (380)
T ss_pred CHH
Confidence 754
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-16 Score=183.50 Aligned_cols=302 Identities=12% Similarity=0.067 Sum_probs=188.3
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~ 107 (1342)
.+.+.+++|++++.-.. ...+ ..| + .. ...++++ .+++++|.+ +.+++++|+++++..++.
T Consensus 33 ~~~~~~ne~~~~~~~~~--~~~~-~~Y----~------~~-~~~~lr~----~ia~~~~~~~~~I~~t~G~~~~l~~~~~ 94 (364)
T PRK04781 33 DVWLNANESAWANPADP--DAST-RRY----P------DP-QPPGLRS----ALAALYGCAPEQLLIGRGSDEAIDLLVR 94 (364)
T ss_pred CEEeeCCCCCCCCChhh--cchh-ccC----C------CC-CHHHHHH----HHHHHhCcChHHEEEeCCHHHHHHHHHH
Confidence 46788888887765211 1111 111 1 11 1234444 778888877 455566577889999999
Q ss_pred HccCCC-CEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 108 SVLNPG-DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 108 al~~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
+++.+| |.|+++++.++ .........|..+..+++..+ +.+.+|++++.+.+...+++++++++++|| ...+.
T Consensus 95 ~~~~~g~~~vlv~~p~y~---~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~ 171 (364)
T PRK04781 95 ALCVPGRDAVLVTPPVFG---MYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIAL 171 (364)
T ss_pred HhcCCCCCeEEEcCCChH---HHHHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCH
Confidence 999999 78887664433 223334556774444433212 245678998876654456777777777777 33366
Q ss_pred HHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 184 ERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 184 ~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
+++.++++. ++++||+||+|...... .......+. .-++++||||+| |.+| ||+++++++++.+.....++
T Consensus 172 ~~~~~l~~~~~~~~~iI~Deay~~f~~~-~~~~~~~~~~~~vi~~~SfSK~~-gl~GlRvGy~v~~~~l~~~l~~~~~~~ 249 (364)
T PRK04781 172 DQIERALQALQGKALVVVDEAYGEFSDV-PSAVGLLARYDNLAVLRTLSKAH-ALAAARIGSLIANAELIAVLRRCQAPY 249 (364)
T ss_pred HHHHHHHHhCCCCcEEEEeCcchhhcCC-cchHHHHhhCCCEEEEecChhhc-ccccceeeeeeCCHHHHHHHHhccCCC
Confidence 666666654 47999999998754321 110111111 247789999999 7666 99999999999988765544
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
..+ .+.+.++..++.+.......+..+++.++++.+.+.|+.. |+.... +++++++|+.++. ..++ ...+.
T Consensus 250 ~~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-p~~g~f~~~~~~~---~~~~-~~~l~ 321 (364)
T PRK04781 250 PVP---TPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRVY-PSQGNFLLVRFDD---AEAA-FQALL 321 (364)
T ss_pred CCC---HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEC-CCCCcEEEEEcCC---HHHH-HHHHH
Confidence 322 3344433333322111244555667888899999999887 553223 4668899998862 3344 44556
Q ss_pred HCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++||.+.++..+. +. .+++|++++..
T Consensus 322 ~~gI~v~~~~~~~--~~---~~~~Ris~~~~ 347 (364)
T PRK04781 322 AAGVVVRDQRAAP--RL---SDALRITLGTP 347 (364)
T ss_pred HCCeEEeeCCCCC--CC---CCeEEEeCCCH
Confidence 6799999875321 11 35799998864
|
|
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=164.24 Aligned_cols=309 Identities=15% Similarity=0.127 Sum_probs=228.0
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~ 107 (1342)
..+.+++.-+|+.|++|+..... |+. .+....+.+.+.+-++..|... ...+++++|+.|+++++.
T Consensus 19 ~L~gPGPsnl~~~V~~A~~~~~l-----gh~-------sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~ 86 (385)
T KOG2862|consen 19 TLLGPGPSNLSGRVQEAMSRPSL-----GHM-------SPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALV 86 (385)
T ss_pred eeecCCCcCCCHHHHHhhcCCcc-----ccC-------CHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHH
Confidence 35788999999999999765442 222 2233466666777888888876 556677799999999999
Q ss_pred HccCCCCEEEEeeccCCccch--hhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC-
Q psy13354 108 SVLNPGDTIMGMSLQEGGHLT--HGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID- 182 (1342)
Q Consensus 108 al~~pGD~Vlv~~~~~~~~~s--~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~- 182 (1342)
.++.|||.|++.. .+.++ .+...++.|+.+++++.+ ......++.+.+.+..++|+++.++.+..+ ...|
T Consensus 87 N~lePgd~vLv~~---~G~wg~ra~D~~~r~ga~V~~v~~~--~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~ 161 (385)
T KOG2862|consen 87 NLLEPGDNVLVVS---TGTWGQRAADCARRYGAEVDVVEAD--IGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDL 161 (385)
T ss_pred hhcCCCCeEEEEE---echHHHHHHHHHHhhCceeeEEecC--cccCccHHHHHHHHHhcCCceEEEEecCccccccchH
Confidence 9999999999754 23333 355678889988888544 445579999999999999988776553333 4446
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC-----
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF----- 254 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~----- 254 (1342)
++.+.++|++|+++++||.+.+.|.... .++ .+|+.-.+..|++++|+| +.+..++...+.++....
T Consensus 162 ~~~~g~lc~k~~~lllVD~VaSlggt~F-----~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~ 236 (385)
T KOG2862|consen 162 LAISGELCHKHEALLLVDTVASLGGTEF-----EMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSF 236 (385)
T ss_pred HHHHHHHhhcCCeEEEEechhhcCCccc-----eehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEE
Confidence 7788999999999999999988765411 112 279988888999999999 888888766666654321
Q ss_pred -----------------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC--CC-e
Q psy13354 255 -----------------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT--KS-H 314 (1342)
Q Consensus 255 -----------------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~--~~-~ 314 (1342)
.....+++.....++.+|+..+.++++++..++++++++++...|++.|++...... .. -
T Consensus 237 yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlpt 316 (385)
T KOG2862|consen 237 YFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPT 316 (385)
T ss_pred EEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCc
Confidence 111245566677788888888888899999999999999999999999988665211 11 2
Q ss_pred EEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 315 IILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 315 ~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
...+.++...+-.+++..++.++++.+..+-.|..+. .+|+++..-
T Consensus 317 vttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gK------v~RIGl~gc 362 (385)
T KOG2862|consen 317 VTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGK------VFRIGLLGC 362 (385)
T ss_pred ceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCccc------EEEEEEeec
Confidence 3446666666667899999998888888766666554 489986543
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=197.70 Aligned_cols=225 Identities=27% Similarity=0.356 Sum_probs=165.0
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
.+|++||||.+|++++||+..++.++.++......| +||+||+|||||++|+.+.+.......... .
T Consensus 53 ~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~-vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~-----~------- 119 (531)
T TIGR02902 53 EPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQH-VIIYGPPGVGKTAAARLVLEEAKKNPASPF-----K------- 119 (531)
T ss_pred chHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCce-EEEECCCCCCHHHHHHHHHHHhhhccCCCc-----C-------
Confidence 489999999999999999999999998887665554 799999999999999999886542110000 0
Q ss_pred hhhhccCCCccEEEEccCCCcC-HHHH-HHHHHHH----h-----------hcC-----ccCCceEEEeccCccCCHHHH
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRG-INEM-AQLLEQT----I-----------YAP-----INARYKIYVIDEVHMLTHHAF 516 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~-~~~i-~~ii~~~----~-----------~~p-----~~~~~rvviIDE~~~L~~~~~ 516 (1342)
....|+++|++.... ...+ +.++... . ..+ ......+++|||++.|+...+
T Consensus 120 -------~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q 192 (531)
T TIGR02902 120 -------EGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQM 192 (531)
T ss_pred -------CCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHH
Confidence 001244444321100 0000 0000000 0 000 023446999999999999999
Q ss_pred HHHHHhhcCC----------------------------CCcEEEEEEeC-CCCCChHHHhccEEEEEEcCCCHHHHHHHH
Q psy13354 517 NAMLKTLEEP----------------------------PKYIKFILATT-EPQKIPITVLSRCIQFNLKKMLHHDIVNNL 567 (1342)
Q Consensus 517 ~~Ll~~Le~p----------------------------~~~~vlIl~t~-~~~kl~~~L~sR~~~i~~~~l~~~el~~~l 567 (1342)
+.|+++||+. +.++.+|++|+ .++.+++++++||..+.|++++.+++..++
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il 272 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIA 272 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHH
Confidence 9999998752 22456676654 577899999999999999999999999999
Q ss_pred HHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC----CCCCHHHHHHHhccC
Q psy13354 568 CYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS----EKITLNSMQEMLSII 624 (1342)
Q Consensus 568 ~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~----~~It~e~V~~~v~~~ 624 (1342)
++.+++.++.+++++++.|+.++. |.|.+.+.++.+..++. ..|+.+||+.++...
T Consensus 273 ~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 273 KNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 999999999999999999988776 89999999998775542 249999999988643
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-16 Score=188.40 Aligned_cols=309 Identities=12% Similarity=0.107 Sum_probs=194.2
Q ss_pred cCceeeeecC----CCC-c--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-Cce--Ee
Q psy13354 27 NNNIELIASE----NYT-S--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AAN--VQ 94 (1342)
Q Consensus 27 ~~~i~l~a~~----n~l-~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~v--i~ 94 (1342)
...+++..+. +.. + +.+.+++.+..... ....|+...+..++++++++++....+. + +.+ ++
T Consensus 26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~------~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~i 99 (396)
T PRK09257 26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETE------TTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQ 99 (396)
T ss_pred cCcEecceeeEECCCCCEeccHHHHHHHHHhcccc------cCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEe
Confidence 3557777663 222 2 34666655544211 1123555667778999888887655432 2 332 55
Q ss_pred cCCHHHHHHHHHHHc--cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC--CCCCCCCHHHHHHHHHhcC--Ce
Q psy13354 95 PHSGSQANQAVFFSV--LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL--NKKEKIDYKKVEYLAKKNK--PK 168 (1342)
Q Consensus 95 ~~sGs~A~~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~--~~~~~id~e~Le~~i~~~~--~~ 168 (1342)
++|+++|+..++.++ ++|||+|++.++.++.+ ...+...|..+ ++++. .+++.+|++.+++.++... ..
T Consensus 100 T~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~---~~~~~~~g~~~--v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~ 174 (396)
T PRK09257 100 TPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNH---RAIFEAAGLEV--KTYPYYDAATKGLDFDAMLADLSQAPAGDV 174 (396)
T ss_pred cCCccHHHHHHHHHHHHhCCCCeEEECCCCcccH---HHHHHHcCCcE--EEEeccccccCccCHHHHHHHHHhCCCCCE
Confidence 658888999998766 58999999777555544 45556677744 44454 2457899999999887532 35
Q ss_pred EEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCC-CCCC-----CCCCcEEEecCCccCCCCCe-
Q psy13354 169 LIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE-YPNP-----VPFADFITSTTHKSLRGPRG- 236 (1342)
Q Consensus 169 liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~-~~~~-----l~~~Divv~S~sK~l~gp~G- 236 (1342)
++++++++|| +...+++|+++|++||++||+|++|....+..+. .... .....++++||||.+ +++|
T Consensus 175 ~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~Gl 253 (396)
T PRK09257 175 VLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNF-GLYGE 253 (396)
T ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcC-ccccc
Confidence 5665667777 3336899999999999999999998753321110 1110 111247789999999 7777
Q ss_pred --eEEEE---echh----HHHHhhccCCccccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 237 --GFILM---KKKY----KKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 237 --G~iv~---~~~l----~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
||+++ +++. ...+.... ...+++++...+.+++..+... ...++++.++++.++++.+.+.|++.
T Consensus 254 RiG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~ 332 (396)
T PRK09257 254 RVGALSVVAEDAEEADRVLSQLKATI-RTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAK 332 (396)
T ss_pred cceeEEEEeCCHHHHHHHHHHHHHHh-hhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99984 3332 33332221 1222333344444433333211 12356677889999999999999987
Q ss_pred C----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 303 G----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 303 g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+ +.+ ..+.+++++|+.++ .+++..+++++||.+.+. .|++++..+.
T Consensus 333 ~~~~~~~~-~~p~gg~~~w~~l~-----~~~~~~l~~~~~V~~~p~--------------~ri~~~~~~~ 382 (396)
T PRK09257 333 GPSRDFDF-IARQRGMFSYSGLT-----PEQVDRLREEFGVYAVGS--------------GRINVAGLNE 382 (396)
T ss_pred CCCCCccc-ccccceEEEecCCC-----HHHHHHHHHcCCEEEcCC--------------CeEEEeeCCH
Confidence 4 333 24567889998764 367788888899988641 1898876433
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=180.22 Aligned_cols=292 Identities=13% Similarity=0.132 Sum_probs=189.4
Q ss_pred cCceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC---CC-CceEecCCHHH
Q psy13354 27 NNNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN---AE-AANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g---~~-~~vi~~~sGs~ 100 (1342)
.+.+.+..|+|.++++ +++++.+++..... .+|.. .+..++++ .++++++ .+ +.+++++|+++
T Consensus 19 ~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~------~~Y~~-~~~~~Lr~----aia~~~~~~~~~~~~i~it~Ga~~ 87 (335)
T PRK14808 19 RDRTYLALNENPFPFPEDLVDEVFRRLNSDTL------RIYYD-SPDEELIE----KILSYLDTDFLSKNNVSVGNGADE 87 (335)
T ss_pred CceeEecCCCCCCCCCHHHHHHHHHHhhhhhh------hcCCC-CChHHHHH----HHHHHhCCCCCCcceEEEcCCHHH
Confidence 3568888888776544 88888776532110 11211 23456666 5666665 33 45556657788
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
++..++.++ |.|++.+ +++......+...|. +++.++.++++.++... +. ..+++++++++||
T Consensus 88 ~i~~~~~~~----d~v~v~~---P~y~~~~~~~~~~g~--~~~~v~~~~~~~~~~~~----~~--~~~~i~i~nP~NPTG 152 (335)
T PRK14808 88 IIYVMMLMF----DRSVFFP---PTYSCYRIFAKAVGA--KFLEVPLTKDLRIPEVN----VG--EGDVVFIPNPNNPTG 152 (335)
T ss_pred HHHHHHHHh----CcEEECC---CCHHHHHHHHHHcCC--eEEEecCCCcCCCChhH----cc--CCCEEEEeCCCCCCC
Confidence 999999887 6788665 444445555667777 55666766667555332 22 3467777777777
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhcc
Q psy13354 179 QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAV 253 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~ 253 (1342)
...+.+++.+++ +++++||+||+|.... .......... ..++++||||++ |.+| ||+++++++++.+....
T Consensus 153 ~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~--~~~~~~~~~~~~~vi~~~S~SK~~-~l~GlRvG~~v~~~~~~~~l~~~~ 228 (335)
T PRK14808 153 HVFEREEIERIL-KTGAFVALDEAYYEFH--GESYVDLLKKYENLAVIRTFSKAF-SLAAQRIGYVVSSEKFIDAYNRVR 228 (335)
T ss_pred CCcCHHHHHHHH-hcCCEEEEECchhhhc--CCchHHHHHhCCCEEEEEechhhc-cCcccceEEEEeCHHHHHHHHHhc
Confidence 444888888888 5899999999987531 1111111111 247889999999 7677 99999999999887654
Q ss_pred CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 254 FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 254 ~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
..+. ...+.+.++..++. .. ++..+..+.+.++++++.+.|.+.|+.+.. +.++++|+.++.. ...++ ...
T Consensus 229 ~~~~---~~~~~q~a~~~~l~-~~-~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~--~~g~f~~~~l~~~-~~~~~-~~~ 299 (335)
T PRK14808 229 LPFN---VSYVSQMFAKVALD-HR-EIFEERTKFIVEERERMKSALREMGYRITD--SRGNFVFIFMEKE-EKERL-LEH 299 (335)
T ss_pred CCCC---CCHHHHHHHHHHHh-CH-HHHHHHHHHHHHHHHHHHHHHHHCCCEECC--CCCeEEEEeCCCc-cHHHH-HHH
Confidence 3332 22445555444443 22 355666778888889999999998887643 4677889988742 23344 445
Q ss_pred HHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.++||.|..+ ..++|++++...+
T Consensus 300 l~~~Gi~V~~~-----------~~~~Risi~~~~~ 323 (335)
T PRK14808 300 LRAKNIAVRSF-----------REGVRITIGKREE 323 (335)
T ss_pred HHHCCeEEEEC-----------CCCeEEecCCHHH
Confidence 55669999853 1359999888644
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-15 Score=174.72 Aligned_cols=312 Identities=14% Similarity=0.084 Sum_probs=208.4
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-Cce--EecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AAN--VQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~v--i~~~sGs~A~~~ 104 (1342)
..+.+-.+.++-+ .+++++...+.+.+ |+|++. +..+....++|+++++++++++|.+ ..+ ++++|||+||..
T Consensus 25 ~~~gy~~~~~~~~-~~~~~~~~~~~~~~--gnP~s~-~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~ 100 (374)
T PLN03032 25 VHFGYPYNLDFDY-GELSQLMKYSINNL--GDPFIE-SNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLH 100 (374)
T ss_pred hccCCCchhccCh-HHHHHHHHhcccCC--CCCccc-CCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHH
Confidence 3455555555433 46777777665443 555542 3334556789999999999999987 332 666699999998
Q ss_pred HHHHcc--CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCC--CC
Q psy13354 105 VFFSVL--NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASA--YS 178 (1342)
Q Consensus 105 al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~--~~ 178 (1342)
++.+.. .++++|+++. ..|.+....+...|..+..+ +.+.+|.+|+++|++.+.+. .|.+++++..+ .+
T Consensus 101 al~~ar~~~~~~~vi~s~---~~H~Sv~kaa~~lg~~~~~V--~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG 175 (374)
T PLN03032 101 GILVGREVFPDGILYASR---ESHYSVFKAARMYRMEAVKV--PTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKG 175 (374)
T ss_pred HHHHHHHhCCCcEEEeCC---CceeHHHHHHHHcCCCCeEe--eeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCc
Confidence 887653 3556777555 45666667777777755544 66788999999999999864 35555554333 33
Q ss_pred cccCHHHHHHHHHHcC-----CEEEEEcccchhhhhcCCCCCCC---CCCcEEEecCCccCCCCCe-eEEEEechhHHHH
Q psy13354 179 QYIDFERFYHIAKNIN-----SYFMVDMAHYAGLIAAGEYPNPV---PFADFITSTTHKSLRGPRG-GFILMKKKYKKII 249 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~g-----i~LIvDea~~~g~~~~~~~~~~l---~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l 249 (1342)
...|+++|+++|+++| +|+++|+|++.+..........+ ..+|.++.|+||++++|.| |+++.++...+.+
T Consensus 176 ~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~ 255 (374)
T PLN03032 176 AVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKAL 255 (374)
T ss_pred cCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhhHhh
Confidence 6669999999999996 59999999987655321111111 2379999999999955999 9999998766554
Q ss_pred hhccCCcc------ccCCc-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC
Q psy13354 250 NSAVFPGI------QGGPL-MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 250 ~~~~~~~~------~~~~~-~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~ 322 (1342)
... .++. ..++. .....++++.+.....+++.+..++..++++++.+.|.+.++++...| ..+.+.+..+.
T Consensus 256 ~~~-~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p-~~~~V~f~~~~ 333 (374)
T PLN03032 256 SQN-VEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNE-LSSTVVFERPM 333 (374)
T ss_pred ccC-CcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEECC-CceEEEEcCCC
Confidence 321 1111 22222 234556677777777778999999999999999999999998876644 34444444332
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+.. +.+ |..+.+. ...+|+++.+..+.+
T Consensus 334 ---~~~-----~~~-~w~l~~~-----------~~~~hi~vm~~~~~~ 361 (374)
T PLN03032 334 ---DEA-----FIK-KWQLACE-----------GDIAHVVVMPNVTVE 361 (374)
T ss_pred ---cHh-----Hhh-eeeeccc-----------CCEEEEEECCCCCHH
Confidence 111 222 4444321 125899888876643
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-16 Score=188.33 Aligned_cols=302 Identities=14% Similarity=0.070 Sum_probs=189.4
Q ss_pred cCceeeeecC--CCCcH-HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceE--ecCCH
Q psy13354 27 NNNIELIASE--NYTSL-AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANV--QPHSG 98 (1342)
Q Consensus 27 ~~~i~l~a~~--n~l~~-~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi--~~~sG 98 (1342)
.+.+++..+. ++.++ .+.+++.+++.... . ......|+...+..++++++++++....+. + +.++ .+.+|
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~-~-~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~ 106 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIA-E-KNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSG 106 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhc-c-ccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCc
Confidence 3557777765 23333 25556555543211 1 111234666777889999888877554321 2 3333 24477
Q ss_pred HHHHHHHHH---HccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC--CCCCCCCHHHHHHHHHhc--CCeEEE
Q psy13354 99 SQANQAVFF---SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL--NKKEKIDYKKVEYLAKKN--KPKLII 171 (1342)
Q Consensus 99 s~A~~~al~---al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~--~~~~~id~e~Le~~i~~~--~~~liv 171 (1342)
++|+..++. ++++|||+|++.++.|+.+ ...+...|. ++++++. ++++.+|++.+++.++.. +.++++
T Consensus 107 ~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~---~~~~~~~G~--~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~ 181 (404)
T PTZ00376 107 TGALRLGFEFLKRFLPAGTTVYVSNPTWPNH---VNIFKSAGL--NVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLL 181 (404)
T ss_pred chHHHHHHHHHHHhcCCCCEEEEcCCCchhH---HHHHHHcCC--ceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEE
Confidence 778777764 6689999999777555544 445567777 4555555 245789999999988643 346676
Q ss_pred EcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC--CCCC--CC-CC--CcEEEecCCccCCCCCe---
Q psy13354 172 AGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG--EYPN--PV-PF--ADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 172 ~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~--~~~~--~l-~~--~Divv~S~sK~l~gp~G--- 236 (1342)
+++++|| +...+++|+++|++||++||+||+|....+... .+.. .+ .. ..++++||||.+ +++|
T Consensus 182 ~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~GlRv 260 (404)
T PTZ00376 182 HACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNM-GLYGERI 260 (404)
T ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcc-ccccccc
Confidence 6777777 333789999999999999999999865433210 0000 00 11 247889999999 7777
Q ss_pred eEE---EEechhHHHH----hhccCCccccCCcHHHHHHHHHHHHHh--cc---chHHHHHHHHHHHHHHHHHHHHhCCc
Q psy13354 237 GFI---LMKKKYKKII----NSAVFPGIQGGPLMHVIAAKAVAFKEV--LK---PDFKIYQKQVVKNAKILSKILDQRGI 304 (1342)
Q Consensus 237 G~i---v~~~~l~~~l----~~~~~~~~~~~~~~~~~~Aaa~al~~~--l~---~~~~~~~~~l~~~a~~l~~~L~~~g~ 304 (1342)
||+ ++++++.+.+ ... .....++++...+.++..++.+. .+ ...++.++++.++++.+.+.|.+.++
T Consensus 261 G~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 339 (404)
T PTZ00376 261 GALHIVCANKEEAANVLSQLKLI-IRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGS 339 (404)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHH-HhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 998 4676654433 221 11222333334444444444221 01 12445567889999999999998753
Q ss_pred ----EEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 305 ----RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 305 ----~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
.+. .+.+++++|+.++ .+++..|++++||.+.|
T Consensus 340 ~~~~~~~-~p~gg~f~~~~~~-----~~~~~~L~~~~~v~v~p 376 (404)
T PTZ00376 340 PGDWEHI-INQIGMFSFTGLT-----KEQVERLIEKYHIYLLD 376 (404)
T ss_pred CCccccc-ccCceEEEecCCC-----HHHHHHHHHhCCEeecC
Confidence 222 3567889998763 57888999988999864
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=186.07 Aligned_cols=327 Identities=11% Similarity=0.015 Sum_probs=193.4
Q ss_pred cCceeeeecCCC-CcH---HHHHHHhHHHHhccccCC-CCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCH
Q psy13354 27 NNNIELIASENY-TSL---AVMEAQGTLLTNKYAEGY-PGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSG 98 (1342)
Q Consensus 27 ~~~i~l~a~~n~-l~~---~v~eal~~~l~~~~~~g~-~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sG 98 (1342)
.+.+.|..+... .++ .+.+++...+... .+ ..-..|+...+..++++++++++...+|.. +.+++++|+
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga 106 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASG---KLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGS 106 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCc---ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCh
Confidence 345777766533 221 2455544443211 01 111235555667789998888888776743 455566577
Q ss_pred HHHHHHHHHHccC-----CCCEEEE-eeccCCccchhhHHhh-hCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEE
Q psy13354 99 SQANQAVFFSVLN-----PGDTIMG-MSLQEGGHLTHGMMLN-MSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLI 170 (1342)
Q Consensus 99 s~A~~~al~al~~-----pGD~Vlv-~~~~~~~~~s~~~~~~-~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~li 170 (1342)
++|+..++.++++ +||.|++ ..+.++++........ ..+.+..+++++.+. .+.+|++.++ +. .+++++
T Consensus 107 ~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~-~~~~~i 183 (416)
T PRK09440 107 QSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID-EDTGAI 183 (416)
T ss_pred HHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cC-CCceEE
Confidence 8899999999984 6899998 5777766543221111 111222233332211 3568999887 23 355677
Q ss_pred EEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC---CCCCcEEEecCCccCCCCCe---eEE
Q psy13354 171 IAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP---VPFADFITSTTHKSLRGPRG---GFI 239 (1342)
Q Consensus 171 v~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~---l~~~Divv~S~sK~l~gp~G---G~i 239 (1342)
++++++|| +...+++|+++|++||++||+||+|..... ...+... ....-++++||||+ +.+| ||+
T Consensus 184 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~-~~~~~~~~~~~~~~vI~~~SfSK~--~~pGlRiG~~ 260 (416)
T PRK09440 184 CVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFP-GIIFSEATPLWNPNIILCMSLSKL--GLPGVRCGIV 260 (416)
T ss_pred EEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCC-CcchhhcCccccCCeEEEeccccc--CCCcceEEEE
Confidence 77777777 223589999999999999999999963211 0000111 01124778999995 4556 999
Q ss_pred EEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc-cchHHH-HHHHHHHHHHHHHHHHHhC----CcEEeeCCCCC
Q psy13354 240 LMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-KPDFKI-YQKQVVKNAKILSKILDQR----GIRIVSGGTKS 313 (1342)
Q Consensus 240 v~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-~~~~~~-~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~ 313 (1342)
++++++++.+......+..+ ++...+.++..++.+.. ..+..+ .+..+.++++.+.+.|.+. ++.+ ..+.++
T Consensus 261 i~~~~l~~~~~~~~~~~~~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~-~~p~gg 338 (416)
T PRK09440 261 IADEEIIEALSNMNGIISLA-PGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLI-HKPEGA 338 (416)
T ss_pred eCCHHHHHHHHHHHHHhccC-CCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEE-ecCCCc
Confidence 99999988887644333332 33445555544443211 112222 3555666777777777652 3443 245678
Q ss_pred eEEEEEccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCc---cccccccccccc
Q psy13354 314 HIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKP---YFTSGIRLGSSA 365 (1342)
Q Consensus 314 ~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~---~~~~~lRi~~~~ 365 (1342)
+++|+.++.. ..+.++... +.++||.+.++..+...... ...+++|++++.
T Consensus 339 ~fiw~~~~~~~~~~~~~~~~-l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~ 393 (416)
T PRK09440 339 IFLWLWFKDLPITTEELYQR-LKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ 393 (416)
T ss_pred eEEEEECCCCCCCHHHHHHH-HHHCCEEEechHhhCCCCccccCCcCceEEEEecC
Confidence 9999999863 334455554 56679999987654321100 012479999974
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=180.15 Aligned_cols=291 Identities=12% Similarity=0.105 Sum_probs=187.6
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
+.+.+..++|..++++.+...+.+. . |.... ..++++ ++++++|.+ +.+++++|+++++..+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~-~----------y~~~~-~~~lr~----~la~~~~~~~~~i~~t~G~~~~i~~~~ 81 (330)
T TIGR01140 18 DWLDFSTGINPLGPPVPPIPASAWA-R----------YPDPE-YDELRA----AAAAYYGLPAASVLPVNGAQEAIYLLP 81 (330)
T ss_pred heeEccccCCCCCCChhhcchHHHh-h----------CCCcc-HHHHHH----HHHHHhCCChhhEEECCCHHHHHHHHH
Confidence 4577888888877664443222221 1 11112 245555 888888876 56667756777877765
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC--
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID-- 182 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~-- 182 (1342)
.+ +.+| .|++..+ ++..+...+...|. ++++++ |++.+++.+.+ ...+++. .++|| ...+
T Consensus 82 ~~-l~~g-~vl~~~p---~y~~~~~~~~~~g~--~~~~~~-------d~~~l~~~~~~-~~~v~i~-~p~NPtG~~~~~~ 145 (330)
T TIGR01140 82 RL-LAPG-RVLVLAP---TYSEYARAWRAAGH--EVVELP-------DLDRLPAALEE-LDVLVLC-NPNNPTGRLIPPE 145 (330)
T ss_pred HH-hCCC-eEEEeCC---CcHHHHHHHHHcCC--EEEEeC-------CHHHHHhhccc-CCEEEEe-CCCCCCCCCCCHH
Confidence 55 5777 5776554 44444555566776 444444 78889888743 3344444 44555 2224
Q ss_pred -HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--CCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 183 -FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--PFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 183 -l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
+++|+++|+++|++||+|++|....... ...... ...+++++|+||++ |++| ||+++++++++.+......+
T Consensus 146 ~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~l~~~~~~~ 223 (330)
T TIGR01140 146 TLLALAARLRARGGWLVVDEAFIDFTPDA-SLAPQAARFPGLVVLRSLTKFF-GLAGLRLGFVVAHPALLARLREALGPW 223 (330)
T ss_pred HHHHHHHHhHhcCCEEEEECcccccCCcc-chhhHhccCCCEEEEEecchhh-cCchhhhhheeCCHHHHHHHHhcCCCC
Confidence 7888999999999999999986443211 111111 12358899999999 6666 99999999988887754333
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
. .+.+.+.++...+ +.. .+.+..++++.++++++.+.|++.+ +.+ .+..++++|+.+++ +.++++.+++
T Consensus 224 ~---~s~~~q~~~~~~l-~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~f~~~~~~~---~~~l~~~l~~ 293 (330)
T TIGR01140 224 T---VNGPARAAGRAAL-ADT-AWQAATRARLAAERARLAALLARLGGLEV--VGGTALFLLVRTPD---AAALHEALAR 293 (330)
T ss_pred C---chHHHHHHHHHHH-hch-HHHHHHHHHHHHHHHHHHHHHHhCCCceE--CCCCCeEEEEEcCC---HHHHHHHHHH
Confidence 2 2234444443333 322 2556778999999999999999987 544 23567889998764 3567777765
Q ss_pred HCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
+||.+.++..+.... .+++|++++..+
T Consensus 294 -~gi~v~pg~~f~~~~----~~~iRi~~~~~~ 320 (330)
T TIGR01140 294 -RGILIRDFDNFPGLD----PRYLRFALPTDE 320 (330)
T ss_pred -CCEEEEECCCCCCCC----CCEEEEEecCHH
Confidence 599999987663211 357999987644
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-15 Score=176.62 Aligned_cols=287 Identities=15% Similarity=0.138 Sum_probs=181.7
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCE
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDT 115 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~ 115 (1342)
..++...++++.+.+...+ +++..+...++++ ++++++|.+++++++ ||++|+..++.++ ++|||+
T Consensus 7 p~~~~~e~~a~~~~~~~~~--------~~~~g~~~~~~e~----~la~~~g~~~~v~~~-sgt~aL~~~l~al~~~pGd~ 73 (376)
T TIGR02379 7 PPVTGQELEYIAEAISEGK--------LSGDGPFSRRCET----WLENRTGTKKALLTP-SCTAALEMAALLLDIQPGDE 73 (376)
T ss_pred CCCCHHHHHHHHHHHHcCC--------ccCCcHHHHHHHH----HHHHHhCCCeEEEeC-CHHHHHHHHHHHcCCCCcCE
Confidence 3456667777777764321 1112333344444 888899998876666 9999999999988 899999
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcC
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNIN 194 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~g 194 (1342)
|+++++.++ +...++...|. +++.++.++ ++.+|++++++++++ ++++|+.++ .++...++++|.++|++||
T Consensus 74 Viv~~~t~~---~~~~~~~~~G~--~~v~vd~d~~~~~~d~~~le~~i~~-~tk~Iip~~-~~G~~~d~~~I~~la~~~~ 146 (376)
T TIGR02379 74 VIMPSYTFV---STANAFVLRGA--KIVFVDIRPDTMNIDETLIESAITH-RTKAIVPVH-YAGVACDMDTIMALANKHQ 146 (376)
T ss_pred EEECCCCcH---HHHHHHHHcCC--EEEEEecCCCcCCCCHHHHHHhcCc-CceEEEEeC-CCCCccCHHHHHHHHHHCC
Confidence 998775554 34444556676 555556663 478999999998876 445555432 2345669999999999999
Q ss_pred CEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCC-CCCeeEEEEe-chhHHHHhhccCCc--------------
Q psy13354 195 SYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLR-GPRGGFILMK-KKYKKIINSAVFPG-------------- 256 (1342)
Q Consensus 195 i~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~-gp~GG~iv~~-~~l~~~l~~~~~~~-------------- 256 (1342)
++||+|++|+.|....+...+.+ .|+.++||+ |.+. |+.||+++++ +++.+.++.....+
T Consensus 147 i~vIeDaa~~~g~~~~~~~~g~~--~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 224 (376)
T TIGR02379 147 LFVIEDAAQGVMSTYKGRALGSI--GHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKY 224 (376)
T ss_pred CEEEEECccccCCccCCcccCCC--CCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcc
Confidence 99999999998864444433333 377777776 5553 4578988877 56766665432111
Q ss_pred -----cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC----cEEeeCCCC----CeEEEEEccCC
Q psy13354 257 -----IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG----IRIVSGGTK----SHIILVDLRNK 323 (1342)
Q Consensus 257 -----~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g----~~~~~~~~~----~~~v~i~~~~~ 323 (1342)
.++.-++..++|...+.++ .+++..++.+++++++.+.|.+.. ..+...+.+ .+++++.++..
T Consensus 225 ~~~~~g~n~~~~~~~Aa~g~~qL~----~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 300 (376)
T TIGR02379 225 TWRDIGSSYLPSELQAAYLWAQLE----QADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDE 300 (376)
T ss_pred eeeeecccCCccHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCc
Confidence 1112223344444444333 344566677777788888886632 222111111 13455666543
Q ss_pred CCCHHHHHHHHHHCCceeeeccCCCCC
Q psy13354 324 KITGKIAESILESANIICNKNSIPNDP 350 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p~~~ 350 (1342)
.+.+.+...|+++||.+...+.|...
T Consensus 301 -~~r~~l~~~L~~~gI~~~~~~~p~~~ 326 (376)
T TIGR02379 301 -DDRNELIKYLKEQEIMAVFHYVPLHS 326 (376)
T ss_pred -CCHHHHHHHHHHCCCCccccCcCCCc
Confidence 34566666677779998876655543
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=179.74 Aligned_cols=290 Identities=13% Similarity=0.093 Sum_probs=186.4
Q ss_pred CceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.|..+++.++ +.+++++.+++....... |. ..+..++++ .+++++|.+ +.+++++|+++++..
T Consensus 19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------Y~-~~g~~~lr~----~ia~~~~~~~~~I~~t~G~~~~l~~ 87 (337)
T PRK03967 19 YRIWLDKNENPFDLPEELKEEIFEELKRVPFNR------YP-HITSDPLRE----AIAEFYGLDAENIAVGNGSDELISY 87 (337)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHhhcCcccc------CC-CCCHHHHHH----HHHHHhCcCcceEEEcCCHHHHHHH
Confidence 4477777776643 458888777763211111 22 224456666 777777766 455566578889888
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.++ +||+|++..+.++. +.......|. .+++++.++++.+|++.+++.+. +.+++++++++|| ...+
T Consensus 88 ~~~~~--~gd~V~v~~P~y~~---~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~~~--~~~~v~~~~P~NPtG~~~~ 158 (337)
T PRK03967 88 LVKLF--EGKHIVITPPTFGM---YSFYAKLNGI--PVIDVPLKEDFTIDGERIAEKAK--NASAVFICSPNNPTGNLQP 158 (337)
T ss_pred HHHHh--CCCeEEEeCCChHH---HHHHHHHcCC--eEEEeecCCCCCcCHHHHHHhcc--CCCEEEEeCCCCCCCCCCC
Confidence 87766 79999987755543 3334456676 55555666678899999988653 3445555566666 4448
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCcc
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~ 257 (1342)
.++|.++|+ ++++||+||+|.... ...+..... ...++++||||.| |.+| ||+++++++++.+......+
T Consensus 159 ~~~l~~i~~-~~~~ii~De~y~~~~--~~~~~~~~~~~~~vi~l~S~SK~~-~l~GlRiG~iv~~~~~i~~~~~~~~~~- 233 (337)
T PRK03967 159 EEEILKVLE-TGKPVVLDEAYAEFS--GKSLIGLIDEYPNLILLRTFSKAF-GLAGIRAGYAIANEEIIDALYRIKPPF- 233 (337)
T ss_pred HHHHHHHHh-cCCEEEEECchhhhc--ccchHHHHhhCCCEEEEecchHhh-cchhhhheeeecCHHHHHHHHhhcCCC-
Confidence 899999995 799999999987432 111111111 1247789999999 7666 99999999988887754433
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHC
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESA 337 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~ 337 (1342)
+.+.+.+.++..++ +.. +++.+....+.++++.+.+.|.+.. .+.+++++|+.++ +...+++ +
T Consensus 234 --~~~~~~q~~~~~~l-~~~-~~~~~~~~~~~~~r~~l~~~L~~~~-----~~~~~~~~~~~~~-------~~~~l~~-~ 296 (337)
T PRK03967 234 --SLNILTMKIVRLAL-DHY-DLIEERIDYIIKERERVRRELGEYA-----YPSDANFLLLKLD-------AYDYLLE-N 296 (337)
T ss_pred --CCCHHHHHHHHHHH-hCH-HHHHHHHHHHHHHHHHHHHHhccCc-----CCCCCcEEEEhHH-------HHHHHHH-C
Confidence 22344555544443 322 2455556666777888888887642 2456788898763 4555554 5
Q ss_pred CceeeeccCCCCCCCcccccccccccccc
Q psy13354 338 NIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 338 GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
||.+.+.. .. ..+++|++++..
T Consensus 297 gi~v~~~~--~~-----~~~~~Ri~~~~~ 318 (337)
T PRK03967 297 GIVVRKLS--GR-----LEGHIRVTVGKR 318 (337)
T ss_pred CEEEEeCC--CC-----CCCeEEEecCCH
Confidence 99998642 11 135799998864
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-16 Score=188.44 Aligned_cols=266 Identities=14% Similarity=0.132 Sum_probs=171.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhCCC---Cce----EecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhC
Q psy13354 64 YYGGCKFIDLIEKIAINRLKKIFNAE---AAN----VQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMS 136 (1342)
Q Consensus 64 ~~~~~~~~~~Le~~~~~~la~~~g~~---~~v----i~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~ 136 (1342)
.|+...+..+|++++++++....+.. +.+ ++.++|+.++...+.+++.|||+|+++++.|+.+ ...+...
T Consensus 86 ~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y---~~~~~~~ 162 (423)
T PLN02397 86 EYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNH---HNIFRDA 162 (423)
T ss_pred CCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhH---HHHHHHc
Confidence 46777788899997777775443221 111 2333455556666666677999999777555544 4555666
Q ss_pred CceeEEEEecC--CCCCCCCHHHHHHHHHh--cCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhh
Q psy13354 137 GKWFNSICYGL--NKKEKIDYKKVEYLAKK--NKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGL 207 (1342)
Q Consensus 137 g~~~~~v~~~~--~~~~~id~e~Le~~i~~--~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~ 207 (1342)
|. ++++++. .+++.+|++.+++.+.. .+.+++++++++|| +...+++|+++|++||++||+||+|....
T Consensus 163 g~--~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~ 240 (423)
T PLN02397 163 GV--PVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFA 240 (423)
T ss_pred CC--eEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCcc
Confidence 77 4444454 23578999999888764 23466666666666 33378899999999999999999997654
Q ss_pred hhcC--CCCCC--CC---CCcEEEecCCccCCCCCe---eEEE--E-echhHHH----HhhccCCccccCCcHHHHHHHH
Q psy13354 208 IAAG--EYPNP--VP---FADFITSTTHKSLRGPRG---GFIL--M-KKKYKKI----INSAVFPGIQGGPLMHVIAAKA 270 (1342)
Q Consensus 208 ~~~~--~~~~~--l~---~~Divv~S~sK~l~gp~G---G~iv--~-~~~l~~~----l~~~~~~~~~~~~~~~~~~Aaa 270 (1342)
+... .+... +. ..-++++||||++ +++| ||++ . ++++++. +...... ...+++.+.+.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~-~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~ 318 (423)
T PLN02397 241 SGDLDADAQSVRMFVEDGHEILVAQSYAKNM-GLYGERVGALSVVCKSADVAVRVKSQLKLIARP-MYSNPPIHGASIVA 318 (423)
T ss_pred CCchhhhhHHHHHHHhcCCcEEEEEECcccC-CCccccceEEEEEeCCHHHHHHHHHHHHHHHhc-ccCCCcHHHHHHHH
Confidence 4210 11111 10 1247789999999 7777 9985 3 4444433 3222112 22233344444444
Q ss_pred HHHHHh--cc---chHHHHHHHHHHHHHHHHHHHHhCC----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 271 VAFKEV--LK---PDFKIYQKQVVKNAKILSKILDQRG----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 271 ~al~~~--l~---~~~~~~~~~l~~~a~~l~~~L~~~g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
.++... .. ++++..++.+.++++.+.+.|++.| +.+. .+.+++++|++++ .+++..|++++||.+
T Consensus 319 ~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~-~p~gg~fl~~~l~-----~~~~~~Ll~~~~V~v 392 (423)
T PLN02397 319 TILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHI-TKQIGMFSFTGLN-----KEQVDRMTKEYHIYM 392 (423)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc-cCCceEEEecCCC-----HHHHHHHHHhCCEEE
Confidence 333221 11 1256778899999999999999887 5543 3678899999874 468999999999999
Q ss_pred e
Q psy13354 342 N 342 (1342)
Q Consensus 342 ~ 342 (1342)
.
T Consensus 393 ~ 393 (423)
T PLN02397 393 T 393 (423)
T ss_pred C
Confidence 6
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=178.58 Aligned_cols=281 Identities=13% Similarity=0.078 Sum_probs=174.0
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~ 107 (1342)
+.+.+..|+|+.+++... +.....+.| +. ....| ++.+++++|.+.+++++ |+++|+..++.
T Consensus 21 ~~i~l~~ne~p~~~~~~~-~~~~~~~~y----p~--------~~~~L----r~~ia~~~~~~~I~it~-Gs~~al~~~~~ 82 (330)
T PRK05664 21 DWLDLSTGIAPWPWPVPA-IPADAWARL----PE--------TDDGL----EAAARAYYGAPQLLPVA-GSQAAIQALPR 82 (330)
T ss_pred HheeecCCcCCCCCCCcc-cCHHHHHhC----CC--------ChHHH----HHHHHHHhCCCCEEECc-CHHHHHHHHHH
Confidence 458888888886554111 111111233 21 01244 44888889987554444 78888887753
Q ss_pred HccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----cccC
Q psy13354 108 SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-----QYID 182 (1342)
Q Consensus 108 al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~~ 182 (1342)
+.|||+|++.++.+ .......+..|. +++.++.+ ++++.+. +.+++++++|+|| ...+
T Consensus 83 --~~~gd~v~v~~P~y---~~~~~~~~~~g~--~~~~v~~~--------~~~~~~~--~~~~v~l~nP~NPTG~~~s~~~ 145 (330)
T PRK05664 83 --LRAPGRVGVLSPCY---AEHAHAWRRAGH--QVRELDEA--------EVEAALD--SLDVLVVVNPNNPTGRRFDPAR 145 (330)
T ss_pred --ccCCCEEEEcCCCh---HHHHHHHHHcCC--eEEEechh--------hHhhhhc--CCCEEEEeCCcCCCCCccCHHH
Confidence 57999999766444 444555567777 44544432 3445553 3345555555666 2225
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccc
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQ 258 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~ 258 (1342)
+++|+++|+++|++||+||+|..+.- .......... .-++++||||.+ |.+| ||+++++++++.+......+..
T Consensus 146 l~~l~~~~~~~~~~iI~DE~y~~~~~-~~s~~~~~~~~~vi~~~SfSK~~-gl~GlRiG~~v~~~~l~~~~~~~~~~~~~ 223 (330)
T PRK05664 146 LLAWHARLAARGGWLVVDEAFMDNTP-QHSLAACAHRPGLIVLRSFGKFF-GLAGARLGFVLAEPALLRALAELLGPWTV 223 (330)
T ss_pred HHHHHHHHHhcCCEEEEECCcccCCC-cccccccccCCCEEEEeeccccc-cCCCcceEEEEeCHHHHHHHHHhcCCCCC
Confidence 78888888999999999999854321 0111111111 137899999999 7677 9999999999888775443332
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCC
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESAN 338 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~G 338 (1342)
+ .+.+.++..++.+ . .+.+..++.+.++++++.+.|++.|++. .+...+++|+..+ .+.++... +.++|
T Consensus 224 ~---~~~~~~~~~~L~~-~-~~~~~~~~~~~~~r~~l~~~L~~~~~~~--~~~~~~f~~~~~~---~~~~~~~~-l~~~g 292 (330)
T PRK05664 224 S---GPTRWLAQAALAD-T-PWQRRQRERLLAASQRLAALLRRHGLTP--AGGCALFQWVRTE---DAAALHEF-LARRG 292 (330)
T ss_pred C---HHHHHHHHHHHhC-h-HHHHHHHHHHHHHHHHHHHHHHHCCCcc--cCCcceEEEEecC---CHHHHHHH-HHHCC
Confidence 2 3344444444432 2 3556678888999999999999988653 2233467787764 23455544 55669
Q ss_pred ceeeeccCCCCCCCccccccccccccc
Q psy13354 339 IICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 339 I~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
|.+..+ .. .+++|++++.
T Consensus 293 i~v~~f---~~------~~~iRis~~~ 310 (330)
T PRK05664 293 ILTRLF---EQ------PASLRFGLPA 310 (330)
T ss_pred eEEEEC---CC------CCeEEEECCC
Confidence 999753 11 2479999885
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.5e-15 Score=176.10 Aligned_cols=320 Identities=13% Similarity=0.110 Sum_probs=205.1
Q ss_pred CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEe--cCCHHHHHHHHHHHcc
Q psy13354 36 ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQ--PHSGSQANQAVFFSVL 110 (1342)
Q Consensus 36 ~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~--~~sGs~A~~~al~al~ 110 (1342)
..++.|.+.+++...+...+ +++.+ . +...++++.+++++++++|.+ +.+.+ ++|||+|++.++.+..
T Consensus 50 tt~~~p~~~~~~~~~l~~~~--~np~s----~-~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar 122 (431)
T TIGR01788 50 TTWMEPEARKLMDETINKNM--IDKDE----Y-PQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMK 122 (431)
T ss_pred CCCCCHHHHHHHHHHHhcCC--CCccc----C-ccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHH
Confidence 34566678888887774322 23322 1 223389999999999999987 23433 5699999999886542
Q ss_pred --------CCC-----CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCC-CCCCHHHHHHHHHhcCCeEEEEcCCC
Q psy13354 111 --------NPG-----DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASA 176 (1342)
Q Consensus 111 --------~pG-----D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~-~~id~e~Le~~i~~~~~~liv~~~s~ 176 (1342)
..| -.|+++.. .|.+........|..+.. ++.+++ +.+|+++|++++.+.+..+++...++
T Consensus 123 ~~~~~~~~~~g~~~~~~~ii~s~~---~H~sv~ka~~~lg~~v~~--i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t 197 (431)
T TIGR01788 123 WRWRKRMEAAGKPTDKPNLVMGSN---VQVCWEKFARYFDVELRE--VPMDPGRYVIDPEQVVEAVDENTIGVVCILGTT 197 (431)
T ss_pred HHHHHHHHhcCCCCCCcEEEEcCc---chHHHHHHHHHcCceeEE--EecCCCceeeCHHHHHHHHhhCCeEEEEEeCCC
Confidence 111 25775554 455556666666764444 465654 68999999999987544333333344
Q ss_pred CC-cccCHHHHHHHHHHc------CCEEEEEcccchhhhh--cCCCCCC--CCCCcEEEecCCccCCCCCe-eEEEEech
Q psy13354 177 YS-QYIDFERFYHIAKNI------NSYFMVDMAHYAGLIA--AGEYPNP--VPFADFITSTTHKSLRGPRG-GFILMKKK 244 (1342)
Q Consensus 177 ~~-~~~~l~~I~~la~~~------gi~LIvDea~~~g~~~--~~~~~~~--l~~~Divv~S~sK~l~gp~G-G~iv~~~~ 244 (1342)
.. ...|+++|+++|+++ |+|+++|++|+.+... .+..... ...+|.++.|.|||+.||.| |+++.++.
T Consensus 198 ~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~ 277 (431)
T TIGR01788 198 YTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDE 277 (431)
T ss_pred CCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeCh
Confidence 44 666999999999999 9999999999855431 1111111 23479999999999889999 99998764
Q ss_pred --hHHHHhhc---cC----CccccCCcH-HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCC
Q psy13354 245 --YKKIINSA---VF----PGIQGGPLM-HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKS 313 (1342)
Q Consensus 245 --l~~~l~~~---~~----~~~~~~~~~-~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~ 313 (1342)
+.+.+... .. .....++.. ....+.+..+..+...+++++.++..++++++.+.|.+.+ |+++.+++..
T Consensus 278 ~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~ 357 (431)
T TIGR01788 278 EALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGI 357 (431)
T ss_pred HHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCc
Confidence 22322110 00 001111111 1233445555555556888999999999999999999874 8887642456
Q ss_pred eEEEEEccCC----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccccc
Q psy13354 314 HIILVDLRNK----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGF 371 (1342)
Q Consensus 314 ~~v~i~~~~~----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~ 371 (1342)
+++.+.+.+. ....++.+ .|.+.|+.+.....|..-.+ .-.+|+++.+..+++.
T Consensus 358 ~iV~Fr~~~~~~~~~~~~~l~~-~L~~~G~~~~~~~~p~~~~~---~~~lR~~~~~~~~~~~ 415 (431)
T TIGR01788 358 PLVAFKLKDDADPGYTLYDLSH-RLRERGWIVPAYTLPKNAED---IVVMRIVVREGFSRDL 415 (431)
T ss_pred eEEEEEeCCCCCCCcCHHHHHH-HHHHCCCcccCCCCCCccCC---eEEEEEEecCCCCHHH
Confidence 7777777642 22234444 44556988765544443322 2358999877777653
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.2e-15 Score=181.36 Aligned_cols=314 Identities=13% Similarity=0.094 Sum_probs=197.3
Q ss_pred cCCCCcHHHHHHHhHHHHhccccCCCCCCcc---CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHH----
Q psy13354 35 SENYTSLAVMEAQGTLLTNKYAEGYPGKRYY---GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFF---- 107 (1342)
Q Consensus 35 ~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~---~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~---- 107 (1342)
..+..+|.+.+++.+.- .+. ++. .| ....+..++..++++++++++|.+.+.++.++|+.+....+.
T Consensus 78 ~~~~~~p~i~~~~~~~~--~~~-~~t---pYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~ 151 (481)
T PRK04366 78 CTMKYNPKINEKVARLP--GFA-ELH---PLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRA 151 (481)
T ss_pred cCCCCCHHHHHHHHhCc--chh-cCC---CCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHH
Confidence 34566777888777652 111 221 12 235566788888999999999998777777677765554332
Q ss_pred HccCCCC----EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcc--c
Q psy13354 108 SVLNPGD----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQY--I 181 (1342)
Q Consensus 108 al~~pGD----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~--~ 181 (1342)
.+..+|| +|+++...|+.+.. .+...|. +++.++.+++|.+|++++++++.+.+ ++++++++++.+. .
T Consensus 152 ~~~~~Gd~~~~~Vlv~~~~hp~~~~---~~~~~G~--~vv~v~~~~~~~~D~e~L~~~i~~~t-~~V~v~~Pn~tG~~~~ 225 (481)
T PRK04366 152 YHEARGDTKRTEVIVPDSAHGTNPA---SAAMAGF--KVVEIPSNEDGLVDLEALKAAVGEDT-AALMLTNPNTLGLFER 225 (481)
T ss_pred HhhccCcCCCCEEEEcCCccHhHHH---HHHHcCC--EEEEeecCCCCCcCHHHHHhhcccCC-eEEEEeCCCCccccch
Confidence 3356776 89987766665543 3456677 44555666678899999999987654 4444445554433 3
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe------eEEEEechhHHHHhhcc-
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG------GFILMKKKYKKIINSAV- 253 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G------G~iv~~~~l~~~l~~~~- 253 (1342)
++++|+++|+++|+++++|++|..+..+. . .+.. .+|++++++||||++|.| |++++++++.+.+....
T Consensus 226 dl~eI~~~a~~~gal~iVD~a~~~~~~g~--~-~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v 302 (481)
T PRK04366 226 NILEIAEIVHEAGGLLYYDGANLNAILGK--A-RPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVV 302 (481)
T ss_pred HHHHHHHHHHHcCCEEEEEecChhhhccc--C-CccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCee
Confidence 79999999999999999999997654321 1 1222 489999999999965532 78888887776653110
Q ss_pred ----CCcc-------------ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEE
Q psy13354 254 ----FPGI-------------QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHII 316 (1342)
Q Consensus 254 ----~~~~-------------~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v 316 (1342)
..+. .++++.....++...+..+..+++++..++..++++++.+.|.+. +.+.......+.+
T Consensus 303 ~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~~~~~~~~ 381 (481)
T PRK04366 303 EKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI-YDLPYDRPCMHEF 381 (481)
T ss_pred eccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-CcccCCCCeeEEE
Confidence 0000 011111222333333444455567777788899999999999886 4443221122334
Q ss_pred EEEccC---CC-CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 317 LVDLRN---KK-ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 317 ~i~~~~---~~-~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.+.... .+ ...++...|.+ +||.+....+|... .+.+|++++..+|.+
T Consensus 382 ~~~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~~~~p~~~-----~~~l~is~~e~~t~e 433 (481)
T PRK04366 382 VLSGKKLKETGVRTLDIAKRLLD-YGFHPPTIYFPLIV-----PEALMIEPTETESKE 433 (481)
T ss_pred EEECccccccCCCHHHHHHHHHH-CCccCCcccccccc-----CCeEEEcccCCCCHH
Confidence 444321 12 23455555554 59987755455432 246999999877753
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-15 Score=179.67 Aligned_cols=315 Identities=17% Similarity=0.179 Sum_probs=183.7
Q ss_pred ceeeeecCCCC----cHHHHHHHhHHHHhccc-cCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENYT----SLAVMEAQGTLLTNKYA-EGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l----~~~v~eal~~~l~~~~~-~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.+.+.+ .+++ .|.+.+|+.+.+. .++ .+...+.... ..+...++++.+++++|. ++++++ +|++|+.
T Consensus 48 ~ld~~s-~~~lgl~~~p~v~~A~~~~l~-~~g~~~~~~~~~~~----~~~~~~~l~~~la~~~~~-~~~~~~-sG~~a~~ 119 (402)
T PRK07505 48 FVNFVS-CSYLGLDTHPAIIEGAVDALK-RTGSLHLSSSRTRV----RSQILKDLEEALSELFGA-SVLTFT-SCSAAHL 119 (402)
T ss_pred EEEeec-CCccCCCCCHHHHHHHHHHHH-HhCCCCCCccchhh----hhHHHHHHHHHHHHHhCC-CEEEEC-ChHHHHH
Confidence 455444 5677 5679999998885 442 1211111111 223444566699999987 666677 8999999
Q ss_pred HHHHHcc----CCCCE-EEEee-ccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 104 AVFFSVL----NPGDT-IMGMS-LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 104 ~al~al~----~pGD~-Vlv~~-~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
.++..+. .+|+. |++.+ ..|++. .........+. .++.++.. |++++++++.+.+ .+++++++++
T Consensus 120 ~ai~~~~~~~~~~~~~~vi~~~~~~H~s~-~~~~~~~~~~~--~v~~~~~~-----d~~~l~~~~~~~~-~~~vl~~p~~ 190 (402)
T PRK07505 120 GILPLLASGHLTGGVPPHMVFDKNAHASL-NILKGICADET--EVETIDHN-----DLDALEDICKTNK-TVAYVADGVY 190 (402)
T ss_pred HHHHHHHhcccCCCCCCEEEEchhhhHhH-HhhhhhhhcCC--eEEEeCCC-----CHHHHHHHHhcCC-CEEEEEeccc
Confidence 8886542 22332 44333 223321 11111111233 44555554 8999999887644 4444445555
Q ss_pred C--cccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CC-----CCCC-CCCCcEEEecCCccCCCCCeeEEEE-echhHH
Q psy13354 178 S--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GE-----YPNP-VPFADFITSTTHKSLRGPRGGFILM-KKKYKK 247 (1342)
Q Consensus 178 ~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~-----~~~~-l~~~Divv~S~sK~l~gp~GG~iv~-~~~l~~ 247 (1342)
| ...++++|.++|++||++||+||+|+.+.++. +. ..+. .....++++|++|++ |+.||+++. ++++.+
T Consensus 191 ~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~-~~~Gg~~~~~~~~~~~ 269 (402)
T PRK07505 191 SMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAF-GASGGVIMLGDAEQIE 269 (402)
T ss_pred ccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhh-hccCeEEEeCCHHHHH
Confidence 6 55689999999999999999999986543321 11 1111 122347788999999 566888875 668888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCC
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKE-VLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKIT 326 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~-~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~ 326 (1342)
.+.....+++++++.++..++++.+..+ ...+++.+..+++.++.+.+...+... . ......+.++.++.....
T Consensus 270 ~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~--~g~~~~i~~~~~~~~~~~ 344 (402)
T PRK07505 270 LILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE---Q--SGSFLPIRLIYIGDEDTA 344 (402)
T ss_pred HHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc---C--CCCCCCEEEEEeCCHHHH
Confidence 8877666666665544444444444444 233355555566666555443332211 1 122233344444322123
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.++...+++ +||.+.+..+|..+.+ ...+|++++..++.+
T Consensus 345 ~~~~~~l~~-~Gi~v~~~~~p~~~~~---~~~lRi~~~~~~t~e 384 (402)
T PRK07505 345 IKAAKQLLD-RGFYTSPVFFPVVAKG---RAGLRIMFRASHTND 384 (402)
T ss_pred HHHHHHHHH-CCCeEeeecCCCCCCC---CceEEEecCccCCHH
Confidence 456666665 5999998766654432 357999998776643
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-16 Score=186.63 Aligned_cols=246 Identities=15% Similarity=0.176 Sum_probs=170.0
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH--hhhCCceeEEEE
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM--LNMSGKWFNSIC 144 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~--~~~~g~~~~~v~ 144 (1342)
+++...+||+ .+++++|.+.+++++ ||++|+..++.+++++||+|++....++++...... ....|. .++.
T Consensus 74 ~~Pt~~~LE~----~lA~l~g~~~~l~~~-sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~--~~~~ 146 (418)
T PLN02242 74 FNPTVLNLGR----QMAALEGTEAAYCTA-SGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNI--TTTF 146 (418)
T ss_pred CChhHHHHHH----HHHHHhCCCeEEEEc-cHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCc--eEEE
Confidence 3566666666 999999999888877 999999999999999999999877655544322211 122454 4444
Q ss_pred ecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCc
Q psy13354 145 YGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FAD 221 (1342)
Q Consensus 145 ~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~D 221 (1342)
++.. |++.+++++++.++++|+++.++|| ...++++|+++|++||++||+|++|..+.+ .+.. .+|
T Consensus 147 ~d~~-----d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~------~~~~~g~d 215 (418)
T PLN02242 147 VDIT-----DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVL------SPARLGAD 215 (418)
T ss_pred cCCC-----CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCC------CHHHcCCc
Confidence 4443 8999999887644677777666666 445999999999999999999999864432 1122 369
Q ss_pred EEEecCCccCCCCC---eeEEEEechhHHHHhhccCC--ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFP--GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILS 296 (1342)
Q Consensus 222 ivv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~--~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~ 296 (1342)
++++|+||+++++. ||++++++++++.++..... ...+.+..+..+++.+ . .+ ..+..+++++.+++.++.
T Consensus 216 ivv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~--~-~l-~tl~~r~~~~~~~a~~la 291 (418)
T PLN02242 216 VVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELS--E-RL-PHLSLRMKEHCRRAMEYA 291 (418)
T ss_pred EEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHH--c-CC-CcHHHHHHHHHHHHHHHH
Confidence 99999999995443 59999999888888754332 2234333344443322 2 12 255667789999999999
Q ss_pred HHHHhCCcEEeeCC------------------CCCeEEEEEccCCCCCHHHHHHHHHHCC
Q psy13354 297 KILDQRGIRIVSGG------------------TKSHIILVDLRNKKITGKIAESILESAN 338 (1342)
Q Consensus 297 ~~L~~~g~~~~~~~------------------~~~~~v~i~~~~~~~~~~~~~~ll~~~G 338 (1342)
+.|++.++++..++ ..+.++.+.++. .+.+.++++.-.
T Consensus 292 ~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~----~~~~~~f~~~l~ 347 (418)
T PLN02242 292 KRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDT----EERANRLMRYLQ 347 (418)
T ss_pred HHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECC----HHHHHHHHHHhh
Confidence 99999887776432 123456666642 355667766644
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.4e-15 Score=177.11 Aligned_cols=260 Identities=18% Similarity=0.145 Sum_probs=171.3
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc---------cCCCCEEEEeeccCCccchhhHHhhhCCce
Q psy13354 69 KFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV---------LNPGDTIMGMSLQEGGHLTHGMMLNMSGKW 139 (1342)
Q Consensus 69 ~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al---------~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~ 139 (1342)
+...++++ .+++++|.+++++++ ||++|+..++.++ ++|||+|+++...+++ ....+...|.
T Consensus 63 ~~~~~fe~----~lA~~~g~~~~v~~~-sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a---~~~~v~~~G~- 133 (438)
T PRK15407 63 RFNDAFEK----KLAEFLGVRYALLVN-SGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPT---TVNPIIQNGL- 133 (438)
T ss_pred hhHHHHHH----HHHHHhCCCeEEEEC-CHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHH---HHHHHHHcCC-
Confidence 33455665 899999988776655 9999999999876 4899999987755543 3444455666
Q ss_pred eEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC
Q psy13354 140 FNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP 218 (1342)
Q Consensus 140 ~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~ 218 (1342)
.++.++++ +++.+|++.+++.+++. +++|++++ .++.+.++++|.++|++||++||+|++|++|..+.+...+.+.
T Consensus 134 -~pv~vdvd~~~~~id~~~le~~i~~~-tkaVi~~~-~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g 210 (438)
T PRK15407 134 -VPVFVDVELPTYNIDASLLEAAVSPK-TKAIMIAH-TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG 210 (438)
T ss_pred -EEEEEecCCCcCCcCHHHHHHHcCcC-CeEEEEeC-CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC
Confidence 55655665 57889999999998764 45555433 2334578999999999999999999999999887766555444
Q ss_pred CCcEEEecCC--ccCCCCCeeEEEEech-hHHHHh---hccCC----------------------------------ccc
Q psy13354 219 FADFITSTTH--KSLRGPRGGFILMKKK-YKKIIN---SAVFP----------------------------------GIQ 258 (1342)
Q Consensus 219 ~~Divv~S~s--K~l~gp~GG~iv~~~~-l~~~l~---~~~~~----------------------------------~~~ 258 (1342)
|+.++||+ |.+.+..||+++++++ +.+.++ ..... ..+
T Consensus 211 --d~~~fSf~~~k~~~~geGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 288 (438)
T PRK15407 211 --DIATLSFYPAHHITMGEGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGY 288 (438)
T ss_pred --ceEEEeCCCCCCccccCceEEEECCHHHHHHHHHHHHhCccccccccccccccccccccccccccccccccccccccc
Confidence 77777776 7786667899999873 333322 11100 112
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEeeCCCCC----eEEEEEccCC-CCCHHHHH
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVSGGTKS----HIILVDLRNK-KITGKIAE 331 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~~~~~~----~~v~i~~~~~-~~~~~~~~ 331 (1342)
+.-++..++|+..+.++. +++..++.+++++++.+.|.+.. +.+...+.+. +..++.+.+. ..+.+.+.
T Consensus 289 n~rmsel~AAig~~qL~~----l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Rd~l~ 364 (438)
T PRK15407 289 NLKITDMQAAIGLAQLEK----LPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDAGFTRVELV 364 (438)
T ss_pred ccCccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcCCCCHHHHH
Confidence 223345566665555444 44667788888999999997753 2221111121 2333444432 23455566
Q ss_pred HHHHHCCceeeeccC
Q psy13354 332 SILESANIICNKNSI 346 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~ 346 (1342)
+.|+++||.+...+.
T Consensus 365 ~~L~~~GI~~~~~~~ 379 (438)
T PRK15407 365 KYLEENKIGTRLLFA 379 (438)
T ss_pred HHHHHCCCCccccCC
Confidence 666667998876554
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-15 Score=177.34 Aligned_cols=261 Identities=15% Similarity=0.116 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CC
Q psy13354 74 IEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KE 151 (1342)
Q Consensus 74 Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~ 151 (1342)
+.+++++++++++|.+++++++ ||++|+..++.++ ++|||+|+++.+.++ +....+...|. +++.++.++ ++
T Consensus 32 ~~~~~e~~la~~~g~~~~v~~~-sgt~al~~~l~~~~~~~Gd~Viv~~~t~~---~~~~~~~~~G~--~~v~~d~d~~~~ 105 (375)
T PRK11706 32 FTRRCQQWLEQRFGSAKVLLTP-SCTAALEMAALLLDIQPGDEVIMPSYTFV---STANAFVLRGA--KIVFVDIRPDTM 105 (375)
T ss_pred HHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHHhCCCCCCEEEECCCCcH---HHHHHHHHcCC--EEEEEecCCCcC
Confidence 3344445889999998777766 9999999888766 799999997775554 44555566777 555556664 46
Q ss_pred CCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--c
Q psy13354 152 KIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--K 229 (1342)
Q Consensus 152 ~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K 229 (1342)
.+|++++++++++. +++|++++ ..+...++++|.++|++||++||+|++|+.|....+...+.+ .|+.++||| |
T Consensus 106 ~~d~~~le~~i~~~-tk~i~~~~-~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~--~~~~~~Sf~~~K 181 (375)
T PRK11706 106 NIDETLIEAAITPK-TRAIVPVH-YAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTI--GHIGCFSFHETK 181 (375)
T ss_pred CcCHHHHHHhcCCC-CeEEEEeC-CCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecC--cCEEEEeCCCCc
Confidence 79999999998764 45555433 234557999999999999999999999998874443322222 477788877 9
Q ss_pred cCCCCCeeEEEEe-chhHHHHhhccCC-------------------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHH
Q psy13354 230 SLRGPRGGFILMK-KKYKKIINSAVFP-------------------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289 (1342)
Q Consensus 230 ~l~gp~GG~iv~~-~~l~~~l~~~~~~-------------------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~ 289 (1342)
.++.+.||+++++ +++.+.++..... ..++..++..+++...+..+ .++...++..
T Consensus 182 ~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~----~l~~~~~~R~ 257 (375)
T PRK11706 182 NYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLE----AADRINQRRL 257 (375)
T ss_pred cccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHH----HHHHHHHHHH
Confidence 9955555656654 5666654432211 01111123344444434333 3456677778
Q ss_pred HHHHHHHHHHHhCC----cEEeeCCC----CCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCC
Q psy13354 290 KNAKILSKILDQRG----IRIVSGGT----KSHIILVDLRNKKITGKIAESILESANIICNKNSIPND 349 (1342)
Q Consensus 290 ~~a~~l~~~L~~~g----~~~~~~~~----~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~ 349 (1342)
++++++.+.|.+.. +.+...+. ..+++++.+++. .+.+.+...|.++||.+...+.|..
T Consensus 258 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~l~~~L~~~gI~~~~~~~p~~ 324 (375)
T PRK11706 258 ALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDL-EDRSALINFLKEAGIMAVFHYIPLH 324 (375)
T ss_pred HHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCc-CCHHHHHHHHHHCCCCccccCCccC
Confidence 88888888887752 33221111 234566666543 2455555566667999886655544
|
|
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-15 Score=171.88 Aligned_cols=197 Identities=23% Similarity=0.288 Sum_probs=157.9
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc-c
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV-L 110 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al-~ 110 (1342)
..++.++++.|.++|...+.+.+ ++|.++.|+ ......+| ++|+.+++++|++ ..++|+.++|++++.++..+ .
T Consensus 49 ~~at~p~~~~Vldam~~~~~~~~--~nPh~~~y~-w~~~~~~E-~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~ 124 (428)
T KOG1549|consen 49 NQATGPMDPRVLDAMLPYLLEYL--GNPHSRSYG-WKAEDAVE-AAREQVAKLINADPSDIVFTSGATESNNLVLKGVAR 124 (428)
T ss_pred cCcCCCCCHHHHHHHHHHHHHhh--cCCCccccc-hhhhHHHH-HHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhc
Confidence 34468899999999999886544 666666332 22222344 4889999999998 45888889999999999998 4
Q ss_pred CCCC----EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHH
Q psy13354 111 NPGD----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFER 185 (1342)
Q Consensus 111 ~pGD----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~ 185 (1342)
.++| +|++...+|++..-.+..+.-.|. .+..+|++.++.+|++.+++.+++.+..+.+.+.++.+ ...|+++
T Consensus 125 ~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~--~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~E 202 (428)
T KOG1549|consen 125 FFGDKTKKHIITLQTEHPCVLDSCRALQEEGL--EVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKE 202 (428)
T ss_pred cccccccceEEEecccCcchhHHHHHHHhcCe--EEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHH
Confidence 5677 999999999988878888777786 55555666788899999999999877777777666666 5559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC----CCcEEEecCCccCCCCCe-eEEEEec
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----FADFITSTTHKSLRGPRG-GFILMKK 243 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----~~Divv~S~sK~l~gp~G-G~iv~~~ 243 (1342)
|.++|+++|+.+++|+||+.|.. +.+ .+|+++.|.|||+ ||.| |++++++
T Consensus 203 I~~icr~~~v~v~~DaAQavG~i-------~vDV~eln~D~~s~s~HK~y-gp~~iGaLYvr~ 257 (428)
T KOG1549|consen 203 IVKICREEGVQVHVDAAQAVGKI-------PVDVQELNADFLSISAHKIY-GPPGIGALYVRR 257 (428)
T ss_pred HHHHhCcCCcEEEeehhhhcCCc-------cccHHHcCchheeeeccccc-CCCcceEEEEcc
Confidence 99999999999999999999877 444 3799999999999 8887 9999986
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-15 Score=172.10 Aligned_cols=280 Identities=14% Similarity=0.087 Sum_probs=165.8
Q ss_pred CceeeeecCCCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHH
Q psy13354 28 NNIELIASENYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVF 106 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al 106 (1342)
..+.+..++|+.+|+ +.+++.+++. .. ..|+ . ...+ ++.+++++|. .+++++|+++|+..++
T Consensus 9 ~~i~l~~~~np~~p~~~~~a~~~~~~-~~-~~yp------~---~~~l----~~~ia~~~~~--~I~vt~G~~~al~~~~ 71 (311)
T PRK08354 9 GLIDFSASVNPYPPEWLDEMFERAKE-IS-GRYT------Y---YEWL----EEEFSKLFGE--PIVITAGITEALYLIG 71 (311)
T ss_pred ceeEecCCCCCCCCHHHHHHHHHHHH-Hh-hcCC------C---hHHH----HHHHHHHHCC--CEEECCCHHHHHHHHH
Confidence 457788887777554 7777766653 11 1222 1 2234 4488888883 3555548888988777
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----ccc
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-----QYI 181 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~ 181 (1342)
..+ .+||+|++..+.++ .+...+...|. +++.++ +|++.+++.+++ ++++++++|+|| +..
T Consensus 72 ~~~-~~gd~vlv~~P~y~---~~~~~~~~~g~--~~~~~~------~d~~~l~~~~~~--~~~vi~~~P~NPTG~~~~~~ 137 (311)
T PRK08354 72 ILA-LRDRKVIIPRHTYG---EYERVARFFAA--RIIKGP------NDPEKLEELVER--NSVVFFCNPNNPDGKFYNFK 137 (311)
T ss_pred Hhh-CCCCeEEEeCCCcH---HHHHHHHHcCC--EEeecC------CCHHHHHHhhcC--CCEEEEecCCCCCCCccCHH
Confidence 544 58999997775544 44555566676 444332 578889887763 344555555666 233
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccc
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQ 258 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~ 258 (1342)
.+++|+++|+++|++||+||+|....... .... ....++++||||+| |.+| ||+++ +.+.++.....+..
T Consensus 138 ~l~~l~~~a~~~~~~li~De~y~~f~~~~-~~~~--~~~vi~~~S~SK~~-~l~GlRiG~~v~---~~~~l~~~~~~~~~ 210 (311)
T PRK08354 138 ELKPLLDAVEDRNALLILDEAFIDFVKKP-ESPE--GENIIKLRTFTKSY-GLPGIRVGYVKG---FEEAFRSVRMPWSI 210 (311)
T ss_pred HHHHHHHHhhhcCcEEEEeCcchhccccc-cccC--CCcEEEEeccHhhc-CCccceeeeeee---hHHHHHHcCCCccC
Confidence 68888999999999999999996544322 1111 12357889999999 7677 99998 55666654333322
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCC
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESAN 338 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~G 338 (1342)
+. .. .+++.++.+...+++.+.++.+.+.++.+.+.+ . . ++.++++++.++ .+.+++..+ .++|
T Consensus 211 ~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l------~-~-~~~~~~~~~~~~---~~~~~~~~l-~~~g 274 (311)
T PRK08354 211 GS---TG-YAFLEFLIEDDFEHLRKTMPLIWREKERFEKAL------Y-V-KSDANFFIKDVG---DAEKFVEFL-KRNG 274 (311)
T ss_pred CH---HH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc------C-C-CCCCcEEEEECC---CHHHHHHHH-HHCC
Confidence 22 22 233333332111122222333333332222221 1 1 234555666653 234566655 5569
Q ss_pred ceeeeccCCCCCCCccccccccccccccc
Q psy13354 339 IICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 339 I~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
|.+.++..++. ++++|++++...
T Consensus 275 v~v~~g~~f~~------~~~iRi~~~~~~ 297 (311)
T PRK08354 275 ILVRDCTSFGL------PGYIRFSVRDRE 297 (311)
T ss_pred eEEEecccCCC------CCeEEEEeCCHH
Confidence 99999876643 257999998753
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=170.05 Aligned_cols=308 Identities=16% Similarity=0.153 Sum_probs=194.2
Q ss_pred eecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc
Q psy13354 33 IASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 33 ~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~ 110 (1342)
+.|.|..+ |.++++|.++-. .+...|+..+....+++ ++++.+|. ..++|.+|||+||..++.+.+
T Consensus 4 f~SDn~~g~~~~m~eam~~a~~-------~~~~~YG~D~~~~~~e~----~~ae~~g~-~a~~Fv~sGT~aN~lal~~~~ 71 (342)
T COG2008 4 FRSDNVAGPTPEMREALAAANA-------VGDDVYGEDPTTNALEQ----RIAELFGK-EAALFVPSGTQANQLALAAHC 71 (342)
T ss_pred cccCccCCCCHHHHHHHHhccc-------cCCCCCCCCHHHHHHHH----HHHHHhCC-ceEEEecCccHHHHHHHHHhc
Confidence 34455543 448888776542 22334565665556666 99999999 555555599999999999999
Q ss_pred CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc------CCeEEEEcCCCCC----cc
Q psy13354 111 NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN------KPKLIIAGASAYS----QY 180 (1342)
Q Consensus 111 ~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~------~~~liv~~~s~~~----~~ 180 (1342)
+||+.|++....|....-. ..++..+-. ...+.....+|.++++++++.+... +|.+++.+..+.. +.
T Consensus 72 ~~~~~vi~~~~aHi~~~E~-Ga~~~~~~~-~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l 149 (342)
T COG2008 72 QPGESVICHETAHIYTDEC-GAPEFFGGG-QKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPL 149 (342)
T ss_pred CCCCeEEEeccccceeccc-CcHHHHcCC-ceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCH
Confidence 9999999754333221111 123333321 3343344578999999999987642 3566666544422 44
Q ss_pred cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC---CCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCcc
Q psy13354 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP---VPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 181 ~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~---l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~ 257 (1342)
.++++|.++|++||+.|++|+|..+....... +.. ...+|++.++++|.++.|.|.+++++.++++.++.......
T Consensus 150 ~el~~i~~~~k~~~l~LHmDGAR~~nA~valg-~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~~G 228 (342)
T COG2008 150 DELEAISAVCKEHGLPLHMDGARLANALVALG-VALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAG 228 (342)
T ss_pred HHHHHHHHHHHHhCCceeechHHHHHHHHHcC-CCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHHHHhc
Confidence 47899999999999999999997544332211 111 12479999999999977777888899998887765433332
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-CCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-RGIRIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
.+.......++....+++. .-+.....+-++.+++|.+.+.. .|+++..+ +.+|++++++++...........+..
T Consensus 229 gl~~k~r~laA~~~~~l~~--~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~-~~tN~vf~~l~~~~i~~l~~~~~~~~ 305 (342)
T COG2008 229 GLMRKARFLAAQGLYALED--DVWRLAADHANAMAARLAEGLEAKPGVKLAFP-VETNMVFVRLPESAIEALRLAGALFY 305 (342)
T ss_pred ccHhhhhHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHhhhhcCCceeccC-CcccEEEEECChHHHHHHHhhchhhe
Confidence 2222222333333333332 12333345556669999999995 59998764 78999999988654322233333333
Q ss_pred CCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.|+++.+.. ..+|+.++..++.
T Consensus 306 ~~~~~~~~~-----------~~vRfvts~a~~~ 327 (342)
T COG2008 306 RGVLIGAHG-----------EIVRFVTSWATSE 327 (342)
T ss_pred eeeeccCCC-----------ceEEEEeeccCCH
Confidence 344443221 2489988887663
|
|
| >KOG0256|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-15 Score=167.24 Aligned_cols=290 Identities=14% Similarity=0.120 Sum_probs=198.5
Q ss_pred cchHHHHHHHHHHHHHHHhCCC-----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEE
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAE-----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNS 142 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~-----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~ 142 (1342)
-.+...+.+++++-+...-|.. +-+++++++|.|+..++..+..|||..+++.+.||++.... ....++++
T Consensus 120 y~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl----~~rTgvei 195 (471)
T KOG0256|consen 120 YHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVEI 195 (471)
T ss_pred ccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccc----eeccCceE
Confidence 3445578887777777765543 34555558899999999999999999999988888774322 22334466
Q ss_pred EEecCC--CCCCCCHHHHHHHHHh-----cCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhc
Q psy13354 143 ICYGLN--KKEKIDYKKVEYLAKK-----NKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAA 210 (1342)
Q Consensus 143 v~~~~~--~~~~id~e~Le~~i~~-----~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~ 210 (1342)
+|+.+. .+++++++.+|+++.+ .+.+-+++.+|.|| .+..+..+.++|.++++.||+||+|+...++.
T Consensus 196 vpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~ 275 (471)
T KOG0256|consen 196 VPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDK 275 (471)
T ss_pred EEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCc
Confidence 665544 6789999999987753 23344555565555 44468899999999999999999998777766
Q ss_pred CCCCCCCC-------CCc--EEEecCCccCCCCCe---eEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc
Q psy13354 211 GEYPNPVP-------FAD--FITSTTHKSLRGPRG---GFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL 277 (1342)
Q Consensus 211 ~~~~~~l~-------~~D--ivv~S~sK~l~gp~G---G~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l 277 (1342)
..+.+.++ ..| -++.|+||-| |.+| |+|++.. ++.....+....+..+ +.+.-..+..+.-.+..
T Consensus 276 ~~F~Sv~ev~~~~~~~~~rvHivyslSKD~-GlpGfRvGviYS~ne~VvsaA~kmssf~~vS-s~tQ~~la~LLSD~~f~ 353 (471)
T KOG0256|consen 276 SEFRSVLEVRKDPHLDPDRVHIVYSLSKDF-GLPGFRVGVIYSNNEDVVSAATKMSSFGLVS-SQTQYLLASLLSDEEFT 353 (471)
T ss_pred cCceEHHHHhhccccCCCcEEEEEEecccc-CCCceEEEEEEecChHHHHHHHHHhhccCCc-HHHHHHHHHHhchHHHH
Confidence 55444332 112 4578999999 8888 9999876 4555554432222222 11111222222223334
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCC------CHHHHHHHHHHCCceeeeccCCCCCC
Q psy13354 278 KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKI------TGKIAESILESANIICNKNSIPNDPE 351 (1342)
Q Consensus 278 ~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~------~~~~~~~ll~~~GI~v~~~~~p~~~~ 351 (1342)
..++.+..+++..+-+++.+.|+++|++... ..++.++|++++..-. ..++...++.+.++.++|+.-..+..
T Consensus 354 ~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~-s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~E 432 (471)
T KOG0256|consen 354 REYLRENNKRLRIRHRYIVEGLKALGIPCLK-SNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHE 432 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCceee-cCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecC
Confidence 4467778889999999999999999999876 4567899999865332 23677788887799998765554443
Q ss_pred Ccccccccccccccccc
Q psy13354 352 KPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 352 ~~~~~~~lRi~~~~~~t 368 (1342)
+|.+|++++....
T Consensus 433 ----pGWFRvcFAn~~~ 445 (471)
T KOG0256|consen 433 ----PGWFRVCFANMSE 445 (471)
T ss_pred ----CCeEEEEeccCCH
Confidence 4789999887533
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=171.68 Aligned_cols=287 Identities=15% Similarity=0.153 Sum_probs=191.1
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEE
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTI 116 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~V 116 (1342)
|.++.++..+|.++..... ..++..|++.+...+||+ .+++++|.++++.++ +|+.|++.++...++|||+|
T Consensus 49 DLlSDS~T~aMs~~q~a~~---~vGDd~Yagd~s~~~LE~----~vAe~lG~e~aV~v~-sGTaAl~ll~~l~v~pGd~V 120 (460)
T PRK13237 49 DLLTDSGTNAMSDRQWAGM---MIGDEAYAGSRNFYHLEE----TVQEYYGFKHVVPTH-QGRGAENLLSRIAIKPGQYV 120 (460)
T ss_pred ECcccCCchhccHHHHHHH---hhcchhhcCCCcHHHHHH----HHHHHHCCCeEEEeC-CHHHHHHHHHHhCCCCcCEE
Confidence 4444444455444421111 223445677777778888 889999999877777 99999998777678999975
Q ss_pred EEeeccCCccchhhH-HhhhCCceeEEEEec----------CCCCCCCCHHHHHHHHHhcCC------eEEEEcCC--CC
Q psy13354 117 MGMSLQEGGHLTHGM-MLNMSGKWFNSICYG----------LNKKEKIDYKKVEYLAKKNKP------KLIIAGAS--AY 177 (1342)
Q Consensus 117 lv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~----------~~~~~~id~e~Le~~i~~~~~------~liv~~~s--~~ 177 (1342)
++ ..++.... .+...|. ..+.+. ...+|.+|++.+++.+++.++ ++++.++. ..
T Consensus 121 --p~---n~~f~Tt~ahI~~~Ga--~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGq 193 (460)
T PRK13237 121 --PG---NMYFTTTRYHQELNGG--IFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQ 193 (460)
T ss_pred --CC---ccchHhhHHHHHhCCc--EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCe
Confidence 22 22333322 2455555 233221 124688999999999986532 22333221 11
Q ss_pred C-cccCHHHHHHHHHHcCCEEEEEcccchhhh---------hcCCCCC-----CCCCCcEEEecCCccCCCCCeeEEEEe
Q psy13354 178 S-QYIDFERFYHIAKNINSYFMVDMAHYAGLI---------AAGEYPN-----PVPFADFITSTTHKSLRGPRGGFILMK 242 (1342)
Q Consensus 178 ~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~---------~~~~~~~-----~l~~~Divv~S~sK~l~gp~GG~iv~~ 242 (1342)
+ ...++++|.++|++||+.||.|+|+.+|.. +.+.... ....+|.+++|++|.+.++.||+++++
T Consensus 194 pvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~GG~i~t~ 273 (460)
T PRK13237 194 PVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIGGFLAMN 273 (460)
T ss_pred eCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCceEEEEC
Confidence 1 234899999999999999999999988732 1122111 123579999999999988889999987
Q ss_pred c-hhHHHHhhcc--CCc--cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEE
Q psy13354 243 K-KYKKIINSAV--FPG--IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIIL 317 (1342)
Q Consensus 243 ~-~l~~~l~~~~--~~~--~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~ 317 (1342)
+ ++.+.++... +.+ .+++.....+.|++..+.+.... ++.++..++.++|.+.|.+.|++++. |.++|.++
T Consensus 274 D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~---~y~~~ri~~~~~l~~~L~~~Gvpv~~-p~ggH~v~ 349 (460)
T PRK13237 274 DEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQY---EYIEHRVGQVRYLGEKLLAAGVPIVE-PVGGHAVF 349 (460)
T ss_pred CHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchH---HHHHHHHHHHHHHHHHHHHCCCceec-CCCceEEE
Confidence 6 6777776642 222 22332223566777777776552 67777888999999999999999976 57789999
Q ss_pred EEccCC-------C-CCHHHHHHHHHHCCceee
Q psy13354 318 VDLRNK-------K-ITGKIAESILESANIICN 342 (1342)
Q Consensus 318 i~~~~~-------~-~~~~~~~~ll~~~GI~v~ 342 (1342)
++.... . ....++..+..+.||-..
T Consensus 350 vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~ 382 (460)
T PRK13237 350 LDARRFLPHLPQDQFPAQALAAELYIESGVRSM 382 (460)
T ss_pred EEhHHhCCCCCcccChHHHHHHHHHHHhCcCeE
Confidence 986431 1 235677777788888664
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.68 E-value=8e-15 Score=172.35 Aligned_cols=286 Identities=17% Similarity=0.200 Sum_probs=189.5
Q ss_pred CCCcHHHHHHHhHH-HHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCE
Q psy13354 37 NYTSLAVMEAQGTL-LTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDT 115 (1342)
Q Consensus 37 n~l~~~v~eal~~~-l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~ 115 (1342)
|.++.+...||.++ +.. ...++..|.+.+.+.+||+ .+++++|.++++.++ ||+.|++.+....++|||+
T Consensus 42 DLltDsgT~aMs~~q~a~----~~~GDe~yag~~s~~~lE~----~va~~~G~~~av~v~-sGT~Al~ll~~l~l~pGDe 112 (450)
T TIGR02618 42 DLLTDSGTNAMSDKQWAG----LMMGDEAYAGSRNFYHLER----TVRELYGFKYVVPTH-QGRGAENLLSQIAIKPGDY 112 (450)
T ss_pred EcccCCCcHHHHHHHHHH----hhhcchhhcCCCcHHHHHH----HHHHHHCCCeEEEcC-CHHHHHHHHHHhCCCCcCE
Confidence 34444444555554 321 1222344777777788888 889999999887777 9999988877777999998
Q ss_pred EEEeeccCCccchhhHH-hhhCCceeEEEEecC----------CCCCCCCHHHHHHHHHhcCC---eEEEEcCCCC---C
Q psy13354 116 IMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGL----------NKKEKIDYKKVEYLAKKNKP---KLIIAGASAY---S 178 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~----------~~~~~id~e~Le~~i~~~~~---~liv~~~s~~---~ 178 (1342)
| ++ +.++..... +...|. .++.++. ..+|.+|++.+++.+++..+ .++.+..+++ +
T Consensus 113 V--ps---n~~f~Tt~ahIe~~Ga--v~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG 185 (450)
T TIGR02618 113 V--PG---NMYFTTTRYHQEKNGA--TFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGG 185 (450)
T ss_pred E--CC---ceeHHHHHHHHHhCCe--EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCC
Confidence 7 22 334333333 466665 3443322 24588999999999986432 2223222232 2
Q ss_pred c---ccCHHHHHHHHHHcCCEEEEEcccchhhhhc------CCC-CCC-------CCCCcEEEecCCccCCCCCeeEEEE
Q psy13354 179 Q---YIDFERFYHIAKNINSYFMVDMAHYAGLIAA------GEY-PNP-------VPFADFITSTTHKSLRGPRGGFILM 241 (1342)
Q Consensus 179 ~---~~~l~~I~~la~~~gi~LIvDea~~~g~~~~------~~~-~~~-------l~~~Divv~S~sK~l~gp~GG~iv~ 241 (1342)
. ..++++|.++|++||++||.|+|+.++.-+. +-. .++ +..+|.+++|++|..++|.||+++.
T Consensus 186 ~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~GG~l~~ 265 (450)
T TIGR02618 186 QPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIGGFLCM 265 (450)
T ss_pred eeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCceEEEe
Confidence 2 3478999999999999999999998753111 111 112 2357999999999998899999995
Q ss_pred -echhHHHHhhccCC--c--cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEE
Q psy13354 242 -KKKYKKIINSAVFP--G--IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHII 316 (1342)
Q Consensus 242 -~~~l~~~l~~~~~~--~--~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v 316 (1342)
++++.+.++..... + .+|+.....+.|++.++.+..+ ..+.++...++++|.+.|.+.|++++. +.++|.+
T Consensus 266 ~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~---~~y~~~r~~~a~~La~~L~~~Gvpv~~-p~ggh~V 341 (450)
T TIGR02618 266 NDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVD---YEYIEHRVKQVRYLGDKLKAAGVPIVE-PVGGHAV 341 (450)
T ss_pred CCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHCCCcccC-CCCcceE
Confidence 45777777654222 1 1222122345556667766654 245677788899999999999999854 6788999
Q ss_pred EEEccCC-------C-CCHHHHHHHHHHCCceee
Q psy13354 317 LVDLRNK-------K-ITGKIAESILESANIICN 342 (1342)
Q Consensus 317 ~i~~~~~-------~-~~~~~~~~ll~~~GI~v~ 342 (1342)
+++.... . ....++..+..+.||-..
T Consensus 342 ~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~ 375 (450)
T TIGR02618 342 FLDARRFLPHIPQDQFPAQSLAASIYVETGVRSM 375 (450)
T ss_pred EEEhHHhCCCCChhhChHHHHHHHHHHHhCccEE
Confidence 9987542 1 234677777788788655
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.7e-15 Score=179.29 Aligned_cols=292 Identities=14% Similarity=0.112 Sum_probs=194.2
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCc--------eEecCCHHHHHHHHHHHccC----------CCCEEEEeeccCCccch
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAA--------NVQPHSGSQANQAVFFSVLN----------PGDTIMGMSLQEGGHLT 128 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~--------vi~~~sGs~A~~~al~al~~----------pGD~Vlv~~~~~~~~~s 128 (1342)
.++...++|+.+.+|+++++|.++. -++++|||+|+..++.+.-. ...-|+. .+..+|++
T Consensus 116 ~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~--~S~~aH~S 193 (490)
T PLN02880 116 TSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVY--ASDQTHSA 193 (490)
T ss_pred cCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEE--EcCCchHH
Confidence 4566779999999999999998742 34555899999888766521 0122221 23356888
Q ss_pred hhHHhhhCCceeE-EEEecCC--CCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEE
Q psy13354 129 HGMMLNMSGKWFN-SICYGLN--KKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--QYIDFERFYHIAKNINSYFM 198 (1342)
Q Consensus 129 ~~~~~~~~g~~~~-~v~~~~~--~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LI 198 (1342)
..+++...|.+.+ ++.++.+ +++++|++.|++.+.+. .|.+|+.+.+.+. ...|+++|+++|++||+|++
T Consensus 194 v~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlH 273 (490)
T PLN02880 194 LQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFH 273 (490)
T ss_pred HHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEE
Confidence 8888899987532 2334554 46899999999988643 3566666554433 66699999999999999999
Q ss_pred EEcccchhhhhcCCCC---CCCCCCcEEEecCCccCCCCCe-eEEEEech--hHHHHhhccCCcc---------------
Q psy13354 199 VDMAHYAGLIAAGEYP---NPVPFADFITSTTHKSLRGPRG-GFILMKKK--YKKIINSAVFPGI--------------- 257 (1342)
Q Consensus 199 vDea~~~g~~~~~~~~---~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~--l~~~l~~~~~~~~--------------- 257 (1342)
||+||+.+......+. .-+..+|.++.++|||+..|.| |+++.++. +...+... ..+.
T Consensus 274 VDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~-~~Yl~~~~~~~~~~~~~~~ 352 (490)
T PLN02880 274 VDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTN-PEFLKNKASQANSVVDYKD 352 (490)
T ss_pred EehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccC-HHHhcCccccccCCCChhc
Confidence 9999987755332211 1223579999999999988999 88888752 22222110 0000
Q ss_pred --ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCC--------
Q psy13354 258 --QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKIT-------- 326 (1342)
Q Consensus 258 --~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~-------- 326 (1342)
...+.-.....++..+.....+++.++.++..++++++.+.+.+. +++++.+ +..+++.+.+++...+
T Consensus 353 ~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~-~~~~iv~Fr~~~~~~~~~~~~~~n 431 (490)
T PLN02880 353 WQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTP-RIFSLVCFRLVPPKNNEDNGNKLN 431 (490)
T ss_pred cCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC-CceEEEEEEEeCCCCChhhHHHHH
Confidence 000001113344445555566677778888889999999999774 7888764 3466777777643221
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.++.+++.++..+++....+.+ ..++|++++..+|.
T Consensus 432 ~~l~~~l~~~g~~~v~~t~~~g-------~~~lR~~~~n~~tt 467 (490)
T PLN02880 432 HDLLDAVNSSGKIFISHTVLSG-------KYVLRFAVGAPLTE 467 (490)
T ss_pred HHHHHHHHhCCCEEEEEEEECC-------EEEEEEEecCCCCC
Confidence 3455666666788887654443 24699999988875
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=176.43 Aligned_cols=221 Identities=20% Similarity=0.148 Sum_probs=150.9
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCC----C
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK----E 151 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~----~ 151 (1342)
+++++.+++++|.++++++++|++.|+.+++.++++|||+|++.. ++|.+....+...|..+..++.+.+++ +
T Consensus 62 ~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~---~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~~ 138 (294)
T cd00615 62 KEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDR---NCHKSVINGLVLSGAVPVYLKPERNPYYGIAG 138 (294)
T ss_pred HHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeC---CchHHHHHHHHHCCCEEEEecCccCcccCcCC
Confidence 445558999999998887676788899999999999999999766 455555556666777544443333332 4
Q ss_pred CCCHHHHHHHHHhc-CCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC-CCC-CCCcEEEecC
Q psy13354 152 KIDYKKVEYLAKKN-KPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP-NPV-PFADFITSTT 227 (1342)
Q Consensus 152 ~id~e~Le~~i~~~-~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~-~~l-~~~Divv~S~ 227 (1342)
.+|++++++.+++. .+++++++++++. ...|+++|+++|+++|++|++|+||+......+..+ ... ..+|++++|+
T Consensus 139 ~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~ 218 (294)
T cd00615 139 GIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQST 218 (294)
T ss_pred CCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEch
Confidence 68999999999753 4677666666655 445999999999999999999999975432222111 111 1479999999
Q ss_pred CccCCCCCe-eEEEEechh--HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 228 HKSLRGPRG-GFILMKKKY--KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 228 sK~l~gp~G-G~iv~~~~l--~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
||+++|+.+ |++..+.+. ...+......+..++|+.+..+++..+...+.. ...+..+++.+++.++++.+.
T Consensus 219 hK~l~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~-~g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 219 HKTLPALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMAL-EGKELVEELIELALYARQEIN 293 (294)
T ss_pred hcccchHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHh
Confidence 999977765 666665532 223333222333455656666666655544432 345567778888888888765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-15 Score=176.77 Aligned_cols=308 Identities=12% Similarity=0.084 Sum_probs=201.4
Q ss_pred ceeeeecCCCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceE-ecCCHHHHHHH
Q psy13354 29 NIELIASENYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANV-QPHSGSQANQA 104 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi-~~~sGs~A~~~ 104 (1342)
.+.+.++...++|. |++++...... .. .......++.+.+++.+++++|.+ +.++ +++|||.++++
T Consensus 13 ~~~f~~Gp~~~~~~~v~~a~~~~~~~-----~~-----hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~ 82 (378)
T PRK03080 13 DPRFSSGPCKKRPGWQLEALADALLG-----RS-----HRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEM 82 (378)
T ss_pred CCCcCCCCcCCChHHHHHHHHhhhcc-----cC-----cCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHH
Confidence 35578888888888 99998755421 00 111234567777999999999974 3444 55699999999
Q ss_pred HHHHccCC-CCEEEEeeccCCccchhhHHhhhCCc-eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-ccc
Q psy13354 105 VFFSVLNP-GDTIMGMSLQEGGHLTHGMMLNMSGK-WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYI 181 (1342)
Q Consensus 105 al~al~~p-GD~Vlv~~~~~~~~~s~~~~~~~~g~-~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~ 181 (1342)
++.+++.+ ++.|++ +..++..+.. ...+..|. .++.+.. +.++.+|+++++. ++.+.+.+.++.+ ...
T Consensus 83 ~~~~l~~~~~~~vi~-~g~f~~~~~~-~~~~~~g~~~v~~~~~--~~g~~~d~~~i~~-----~~~V~~~h~~t~tG~~~ 153 (378)
T PRK03080 83 ALWSLLGARRVDHLA-WESFGSKWAT-DVVKQLKLEDPRVLEA--DYGSLPDLSAVDF-----DRDVVFTWNGTTTGVRV 153 (378)
T ss_pred HHHhcCCCCcceEEE-eCHHHHHHHH-HHHhhcCCCCceEecc--CCCCCCCHhhcCC-----CCCEEEEecCCccceec
Confidence 99999875 445543 4444443211 01244566 6666644 4455678776442 3345555555544 555
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC------
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------ 254 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------ 254 (1342)
|+++|++ +++|+++++|++|++|...- .++.+|++++|.||||++|.| |+++.+++..+.+.....
T Consensus 154 pi~~I~~--~~~g~~~vVDa~qs~G~~pi-----dv~~iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~ 226 (378)
T PRK03080 154 PVARWIG--ADREGLTICDATSAAFALPL-----DWSKLDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPK 226 (378)
T ss_pred cchhhcc--ccCCCeEEEecccccccCCC-----CHHHCcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCch
Confidence 9999999 88999999999999987721 112369999999999988999 999999988777654211
Q ss_pred ----------------CccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCC-cEEeeC-C-C-CC
Q psy13354 255 ----------------PGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRG-IRIVSG-G-T-KS 313 (1342)
Q Consensus 255 ----------------~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~-~-~-~~ 313 (1342)
....++++.....++..++..+.+. +++.+.++..++++++++.|.+.+ +.+... + . ..
T Consensus 227 ~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~ 306 (378)
T PRK03080 227 FFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSN 306 (378)
T ss_pred hheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCc
Confidence 0111334444455556677666665 688889999999999999999876 455431 1 1 12
Q ss_pred eEEEEEccCC--CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 314 HIILVDLRNK--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 314 ~~v~i~~~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.++.+.+++. ..+.++...++++ ||.+....... ..+.+|+|++.+++.
T Consensus 307 ~i~~~~~~~~~~~~~~~~~~~l~~~-~i~v~~g~~~~------~~~~vRis~~~~~t~ 357 (378)
T PRK03080 307 TSVTLDFVDAQAAVDAAAVAKLLRE-NGAVDIEPYRD------APNGLRIWCGPTVEP 357 (378)
T ss_pred cEEEEEcCCchHHHHHHHHHHHHHc-CCeeccccccC------CCCcEEEecCCCCCH
Confidence 3566666541 1234566666665 88776432211 135699999988774
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-14 Score=176.84 Aligned_cols=296 Identities=14% Similarity=0.094 Sum_probs=199.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCCCc--------eEecCCHHHHHHHHHHHccC--------C--CCEEEEeeccCCcc
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAEAA--------NVQPHSGSQANQAVFFSVLN--------P--GDTIMGMSLQEGGH 126 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~~~--------vi~~~sGs~A~~~al~al~~--------p--GD~Vlv~~~~~~~~ 126 (1342)
+..++...++|+.+.+|+++++|.++. -+++++||+|+..++.+.-. . .+-|+. ....+|
T Consensus 162 ~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy--~S~~aH 239 (539)
T PLN02590 162 WLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVY--GSDQTH 239 (539)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEE--ecCCch
Confidence 345677789999999999999998742 34455999999888776421 0 122221 233577
Q ss_pred chhhHHhhhCCceeE-EEEecCC--CCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCE
Q psy13354 127 LTHGMMLNMSGKWFN-SICYGLN--KKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--QYIDFERFYHIAKNINSY 196 (1342)
Q Consensus 127 ~s~~~~~~~~g~~~~-~v~~~~~--~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~ 196 (1342)
++..+++...|++.. +..++.+ +++++|++.|++++.+. .|.+|+.+.+... ...|+++|+++|++||+|
T Consensus 240 ~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~W 319 (539)
T PLN02590 240 SSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIW 319 (539)
T ss_pred HHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCe
Confidence 888888888887522 3334555 56899999999998653 3666666554443 666999999999999999
Q ss_pred EEEEcccchhhhhcCCCC---CCCCCCcEEEecCCccCCCCCe-eEEEEech--hHH-------HHhhcc---------C
Q psy13354 197 FMVDMAHYAGLIAAGEYP---NPVPFADFITSTTHKSLRGPRG-GFILMKKK--YKK-------IINSAV---------F 254 (1342)
Q Consensus 197 LIvDea~~~g~~~~~~~~---~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~--l~~-------~l~~~~---------~ 254 (1342)
++||+||+........+. .-++.+|.++.++|||+..|.+ |+++.++. +.+ ++.... .
T Consensus 320 lHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~ 399 (539)
T PLN02590 320 LHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYK 399 (539)
T ss_pred EEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCcc
Confidence 999999986554322221 2234589999999999988888 88887762 222 221100 0
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCC--------
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKI-------- 325 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~-------- 325 (1342)
.+....+.......++..++.+..+++.+.+++..++++++.+.+.+. +|+++.+ +...++.+++.+...
T Consensus 400 d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~-~~l~iVcFr~~~~~~~~~~~~~l 478 (539)
T PLN02590 400 DWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT-RYFSLVCFRLAPVDGDEDQCNER 478 (539)
T ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CceEEEEEEecCCCCCHHHHHHH
Confidence 111222223445566777777777789999999999999999999885 6888764 445666666654221
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+.++.+++.+...+++.+..+.+ ...+|++++...|..
T Consensus 479 n~~l~~~l~~~G~~~vs~t~~~g-------~~~lR~~i~n~~T~~ 516 (539)
T PLN02590 479 NRELLAAVNSTGKIFISHTALSG-------KFVLRFAVGAPLTEE 516 (539)
T ss_pred HHHHHHHHHhCCCEEEEeeEECC-------EEEEEEEecCCCCCH
Confidence 23556666666666666554333 236999998887754
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-14 Score=187.08 Aligned_cols=304 Identities=15% Similarity=0.101 Sum_probs=196.9
Q ss_pred CCCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--C-ceEecCCHHHHHHHHHHHc-c
Q psy13354 36 ENYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--A-ANVQPHSGSQANQAVFFSV-L 110 (1342)
Q Consensus 36 ~n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~-~vi~~~sGs~A~~~al~al-~ 110 (1342)
..++++. +.+++.....+.+ +++.+.+. ......+..+++++.+++++|++ + .++|+.|+|+|+..++.++ +
T Consensus 43 tt~~~~~~V~~~~~~~~~~~~--~np~s~~~-~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~ 119 (805)
T PLN02724 43 ATLYSESQLEAALADFSSNVY--GNPHSQSD-SSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPW 119 (805)
T ss_pred CCCCCHHHHHHHHHHHHhhcc--CCCCcCcc-hhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCC
Confidence 4555665 4444434433222 34443222 23334455666999999999985 3 4678878999999999888 7
Q ss_pred CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC------CCCCCCH--HHHHHHHH---------hcCCeEEE-E
Q psy13354 111 NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN------KKEKIDY--KKVEYLAK---------KNKPKLII-A 172 (1342)
Q Consensus 111 ~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~------~~~~id~--e~Le~~i~---------~~~~~liv-~ 172 (1342)
.+||+|++...+|++...........|+.+..++++.+ +.+.+++ +++++.++ ..+.+++. .
T Consensus 120 ~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~ 199 (805)
T PLN02724 120 SSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFP 199 (805)
T ss_pred CCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEE
Confidence 89999999888887766555555566776666654311 2344443 55666532 12234444 4
Q ss_pred cCCCCC-cccCHHHHHHHHHHc--------CCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEe
Q psy13354 173 GASAYS-QYIDFERFYHIAKNI--------NSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMK 242 (1342)
Q Consensus 173 ~~s~~~-~~~~l~~I~~la~~~--------gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~ 242 (1342)
+.+|.+ ...|++.|..+++.. ++++++|+||++|...-+.. .-.+|++++|+|||++||.| |+++++
T Consensus 200 ~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~---~~~~Dfl~~S~HK~~GgP~G~G~L~vr 276 (805)
T PLN02724 200 SECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLS---RYPADFVVVSFYKIFGYPTGLGALLVR 276 (805)
T ss_pred ccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChh---hcCCCEEEEecceeccCCCCceEEEEe
Confidence 456666 455898775555532 35799999999887621110 01379999999999966999 999999
Q ss_pred chhHHHHhhccCCc-----------------------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 243 KKYKKIINSAVFPG-----------------------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 243 ~~l~~~l~~~~~~~-----------------------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
+++.+.+.+....+ -.|+++.+..+++.+++......+++.+.++..+.++++.+.|
T Consensus 277 ~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L 356 (805)
T PLN02724 277 RDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSL 356 (805)
T ss_pred hhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 98777665432211 2356666777777777655554467888899999999999999
Q ss_pred HhC-------CcEEeeCC-------CCCeEEEEEccCCC---CCHHHHHHHHHHCCceeeecc
Q psy13354 300 DQR-------GIRIVSGG-------TKSHIILVDLRNKK---ITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 300 ~~~-------g~~~~~~~-------~~~~~v~i~~~~~~---~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
.+. ++.++.+. ...+++.+.+.... .....+..++.++||.++.++
T Consensus 357 ~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~ 419 (805)
T PLN02724 357 RNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGC 419 (805)
T ss_pred HhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeecc
Confidence 886 35555322 12356666665422 234557778888899998754
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=159.68 Aligned_cols=207 Identities=23% Similarity=0.287 Sum_probs=155.3
Q ss_pred hccCCCCccccccchhhHHHHHH---HHHc-----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLIN---ALDK-----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~---~l~~-----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
...+.-+|+|+|||+.+++..+- -+++ ..-|..+|||||||||||.+|+++|++...
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--------------- 177 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--------------- 177 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC---------------
Confidence 33556689999999999865433 3433 245678999999999999999999998862
Q ss_pred CCcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC------------HHHH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT------------HHAF 516 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~------------~~~~ 516 (1342)
.++.++++.. ++...++++.+.+... .+-||+|||.|.+. .+..
T Consensus 178 --------------p~l~vkat~liGehVGdgar~Ihely~rA~~~----aPcivFiDE~DAiaLdRryQelRGDVsEiV 239 (368)
T COG1223 178 --------------PLLLVKATELIGEHVGDGARRIHELYERARKA----APCIVFIDELDAIALDRRYQELRGDVSEIV 239 (368)
T ss_pred --------------ceEEechHHHHHHHhhhHHHHHHHHHHHHHhc----CCeEEEehhhhhhhhhhhHHHhcccHHHHH
Confidence 3566665432 2334566666665544 34599999999763 2468
Q ss_pred HHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCC-
Q psy13354 517 NAMLKTLEEP--PKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQG- 592 (1342)
Q Consensus 517 ~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g- 592 (1342)
|+||.-|+.. ...+|.|.+||+++-++++++||+ ..++|.-|+.++...++...+++..+.++-. +++++..++|
T Consensus 240 NALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~ 318 (368)
T COG1223 240 NALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGM 318 (368)
T ss_pred HHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCC
Confidence 9999888753 467999999999999999999999 8899999999999999999999988887776 8888888766
Q ss_pred cHHHHHHHH-----HHHHhhcCCCCCHHHHHHHhcc
Q psy13354 593 SMRDALSLT-----DQAINYSSEKITLNSMQEMLSI 623 (1342)
Q Consensus 593 ~lr~a~~~L-----~kl~~~~~~~It~e~V~~~v~~ 623 (1342)
+-|++..-+ .+++.-....|+.+|++.++..
T Consensus 319 SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 319 SGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred CchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 666665333 3333333455888888777643
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=174.55 Aligned_cols=286 Identities=11% Similarity=0.053 Sum_probs=176.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHhC-CC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHh-hhCCc
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFN-AE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMML-NMSGK 138 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g-~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~-~~~g~ 138 (1342)
|+...+..++++++.+++.+..+ .. +.+++++|+++|+..++.++++|||+|++.++.++.+. ..+ ...|.
T Consensus 40 Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~---~~~~~~~g~ 116 (388)
T PRK08637 40 YAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYK---LTFNTRRGA 116 (388)
T ss_pred CCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHH---HHHHHhcCC
Confidence 44556667888877666655432 11 23455657888999999999999999998776655443 222 23566
Q ss_pred eeEEEEecCC-CCCCCCHHHHHHHHH---hcCCeEEEEcCCCCC-----cccCHHHHHHHHHH-----cCCEEEEEcccc
Q psy13354 139 WFNSICYGLN-KKEKIDYKKVEYLAK---KNKPKLIIAGASAYS-----QYIDFERFYHIAKN-----INSYFMVDMAHY 204 (1342)
Q Consensus 139 ~~~~v~~~~~-~~~~id~e~Le~~i~---~~~~~liv~~~s~~~-----~~~~l~~I~~la~~-----~gi~LIvDea~~ 204 (1342)
++++++.. +++.+|++++++.++ +....++++++++|| +...+++|+++|++ |+++||+||+|.
T Consensus 117 --~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~ 194 (388)
T PRK08637 117 --EIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYF 194 (388)
T ss_pred --EEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccch
Confidence 45555552 445689999999887 234456767666777 33368888888875 899999999987
Q ss_pred hhhhhcCCCCCCC----C---CC-cEEEecCCccCCCCCe---eEEEEe------chhHHHHhhcc---CCccccCCcHH
Q psy13354 205 AGLIAAGEYPNPV----P---FA-DFITSTTHKSLRGPRG---GFILMK------KKYKKIINSAV---FPGIQGGPLMH 264 (1342)
Q Consensus 205 ~g~~~~~~~~~~l----~---~~-Divv~S~sK~l~gp~G---G~iv~~------~~l~~~l~~~~---~~~~~~~~~~~ 264 (1342)
...+......+.+ + .. -+.++|+||.+ +.+| ||++.+ +++.+.+.... ......+.+..
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~-~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~ 273 (388)
T PRK08637 195 GLFYEDSYKESLFAALANLHSNILAVKLDGATKEE-FVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHP 273 (388)
T ss_pred hcccCCccchhhHHHhhcccccceEEEeccccccC-CCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcH
Confidence 5544332221111 1 11 13346999988 5666 999864 46666664311 01112233344
Q ss_pred HHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 265 VIAAKAVAFKEV-LKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 265 ~~~Aaa~al~~~-l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
.+.++..++.+. ...+.+..+..+.++++.+.+.|.+. ++.+. ++.+++++|+.++. ..+.+++..+++++||
T Consensus 274 ~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~~~l~~-~~~~~l~~~l~~~~gv 351 (388)
T PRK08637 274 SQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAY-PFNSGYFMCLKLKG-VDAEELRVHLLEKYGI 351 (388)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-cccceEEEEecCCh-HHHHHHHHHHhhhcce
Confidence 555554444221 11123444556777777777777664 35443 34678899999863 2345677777777899
Q ss_pred eeeeccCCCCCCCcccccccccccccccc
Q psy13354 340 ICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 340 ~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+.+. ..+++|++++....
T Consensus 352 ~~~~~----------~~~~iRi~~~~~~~ 370 (388)
T PRK08637 352 GTIAL----------NETDLRIAFSCVEE 370 (388)
T ss_pred EEEec----------cCCceEEEeecCCH
Confidence 87631 13469999987433
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-13 Score=164.40 Aligned_cols=281 Identities=13% Similarity=0.071 Sum_probs=192.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCC---ceEecCCHHHHHHHHHHHccC--CCCEEEEeeccCCccchhhHHhhhCCceeEEEE
Q psy13354 70 FIDLIEKIAINRLKKIFNAEA---ANVQPHSGSQANQAVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSIC 144 (1342)
Q Consensus 70 ~~~~Le~~~~~~la~~~g~~~---~vi~~~sGs~A~~~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~ 144 (1342)
...++|..+.+++++++|.+. .-++++|||+||..++.+.-. +...++ .+..+|++..+++...|..+. .
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy---~S~~aH~Sv~KAa~llgi~~~--~ 204 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILY---ASRESHYSVFKAARMYRMECV--K 204 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEE---EcCCccHHHHHHHHhcCCcce--E
Confidence 467999999999999999853 234455999999999887632 333455 334678888889899998544 4
Q ss_pred ecCCCCCCCCHHHHHHHHHhcC--CeEEEEcCCCCC--cccCHHHHHHHHHHcCC-----EEEEEcccchhhhhcCCCCC
Q psy13354 145 YGLNKKEKIDYKKVEYLAKKNK--PKLIIAGASAYS--QYIDFERFYHIAKNINS-----YFMVDMAHYAGLIAAGEYPN 215 (1342)
Q Consensus 145 ~~~~~~~~id~e~Le~~i~~~~--~~liv~~~s~~~--~~~~l~~I~~la~~~gi-----~LIvDea~~~g~~~~~~~~~ 215 (1342)
++.++++++|+++|++.+.+.+ |.+|+.+.+.++ ...|+++|+++|+++|+ |++||+|++...........
T Consensus 205 Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~ 284 (470)
T PLN02263 205 VDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAP 284 (470)
T ss_pred eccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccccc
Confidence 5667889999999999997655 666666554444 66699999999999997 99999998754442222222
Q ss_pred CCCC---CcEEEecCCccCCCCCe-eEEEEechhHHHHhhc------cCCccccCCcHHHHHHHHHHHHHhccchHHHHH
Q psy13354 216 PVPF---ADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA------VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQ 285 (1342)
Q Consensus 216 ~l~~---~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~------~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~ 285 (1342)
.++. +|.++.++|||+..|.+ |+++.++...+.+... ......++-.......++..+..+..+++.+..
T Consensus 285 ~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i 364 (470)
T PLN02263 285 KVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEV 364 (470)
T ss_pred ccCCCcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHH
Confidence 2332 79999999999988988 9888887554333211 111122222222356667777777777899999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 286 KQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 286 ~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++..++++++.+.|.+.|+.....+ ....+.+..+. .+. .. +|..+... + ..+|+++.+
T Consensus 365 ~~~~~~A~~l~~~l~~~g~~~~~~p-~s~~V~f~~p~----~~~----~~-~gW~L~~~-----~------~~~Hivvmp 423 (470)
T PLN02263 365 QKCLRNAHYLKDRLREAGISAMLNE-LSSTVVFERPK----DEE----FV-RRWQLACQ-----G------NIAHVVVMP 423 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEeCC-CceEEEEecCc----hHH----hh-cceEEccC-----C------CcEEEEEcC
Confidence 9999999999999999998876643 34455554321 111 12 35554431 1 248898888
Q ss_pred ccccccchhhH
Q psy13354 366 ITTRGFSELEI 376 (1342)
Q Consensus 366 ~~t~~~~e~d~ 376 (1342)
..+.+..++-+
T Consensus 424 hv~~~~id~fi 434 (470)
T PLN02263 424 SVTIEKLDYFL 434 (470)
T ss_pred CCCHHHHHHHH
Confidence 76654433333
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-14 Score=172.02 Aligned_cols=248 Identities=19% Similarity=0.224 Sum_probs=172.4
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++...++|+ .+++++|.+.+++++ ||++|+..++.+++++||+|++....|++..... ......|. ++..+
T Consensus 38 ~~p~~~~le~----~la~l~g~~~a~~~~-sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~--~~~~v 110 (369)
T cd00614 38 GNPTVDALEK----KLAALEGGEAALAFS-SGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGI--EVTFV 110 (369)
T ss_pred CChhHHHHHH----HHHHHHCCCCEEEEc-CHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCe--EEEEe
Confidence 4565666666 899999988888887 9999999999999999999998776665543322 22334555 44544
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.+ |++++++++++ ++++|++..++++ ...|+++|+++|++||++||+|++|+.+.. ..++. .+|+
T Consensus 111 ~~~-----d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~-----~~~~~~g~Di 179 (369)
T cd00614 111 DPD-----DPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL-----QRPLELGADI 179 (369)
T ss_pred CCC-----CHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc-----CChhhhCCcE
Confidence 554 68899998875 4567776655555 455999999999999999999999887644 12333 3799
Q ss_pred EEecCCccCCCCC---eeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+++|++|+++|+. ||++++++ ++++.++..... +++..++..+++. ...++ .+..+.++..+++.++.+.
T Consensus 180 vv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--~g~~~~p~~a~~~---l~~l~-tl~~r~~~~~~na~~la~~ 253 (369)
T cd00614 180 VVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLA--LGTILSPFDAWLL---LRGLK-TLPLRMERHSENALKVAEF 253 (369)
T ss_pred EEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHh--hCCCCCHHHHHHH---HcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 9999999996543 69999987 787777654322 2333344444332 22232 4556788899999999999
Q ss_pred HHhCC-cEEeeCC----------------CCCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 299 LDQRG-IRIVSGG----------------TKSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 299 L~~~g-~~~~~~~----------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
|.+.+ +..+..| ..+.++.+.+++ +.+.+..+++.-.+..
T Consensus 254 L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~---~~~~~~~f~~~l~~~~ 310 (369)
T cd00614 254 LEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG---GLEAAKKFLNALKLFS 310 (369)
T ss_pred HHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC---CHHHHHHHHHcCCcce
Confidence 99865 3322211 235677787763 3456677777656553
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-14 Score=170.91 Aligned_cols=314 Identities=12% Similarity=0.082 Sum_probs=205.8
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAV 105 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~a 105 (1342)
.+.+.+++..+|+.|++|+...+.+....+.+............++.+.+++.++++++.+ ++++++++|+.|++++
T Consensus 4 ~~l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~ 83 (360)
T PRK05355 4 VYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMV 83 (360)
T ss_pred eeeccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHH
Confidence 3568899999999999999887642111111111111223334577777999999999963 4677778999999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHH-HHHhcCCeEEEE-cCCCCC-ccc-
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEY-LAKKNKPKLIIA-GASAYS-QYI- 181 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~-~i~~~~~~liv~-~~s~~~-~~~- 181 (1342)
+..++.+||++++......++- .....+..|.. ..+..+. ..+..+..++++ .+++ .+++|.+ ++.+.+ ...
T Consensus 84 ~~nl~~~g~~~l~i~~G~fg~r-~~~~a~~~g~~-~~~~~~~-~~g~~~~~~~~~~~l~~-~~~~V~~th~eTstGv~~~ 159 (360)
T PRK05355 84 PMNLLGGGKKADYVDTGSWSKK-AIKEAKKYGEV-NVAASSE-DDGFTYIPPLDEWQLSD-DAAYVHYTSNETIDGTEFH 159 (360)
T ss_pred HHhcCCCCCeEEEEECCHHHHH-HHHHHHHhCCc-eEEeccc-ccCCCCCCChhhccCCC-CCCEEEEccCCCcceEecC
Confidence 9999999999987553222221 13445666753 4443331 133444444444 5554 3455444 433333 332
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc------
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA------ 252 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~------ 252 (1342)
++++| +|+++++|+++++|.. +++ ..|++++|.+|++ ||+| |+++.+++..+.+...
T Consensus 160 ~i~~i------~g~l~vVDavss~g~~-------~idv~~~d~~~~ssqK~l-gP~Glg~l~~s~~~l~~~~~~~~~~~~ 225 (360)
T PRK05355 160 ELPDT------GDVPLVADMSSDILSR-------PIDVSKFGLIYAGAQKNI-GPAGLTIVIVREDLLGRALPSIPSMLD 225 (360)
T ss_pred ccccc------CCCcEEEEcCccccCc-------cCCHHHccEEEEeccccc-cCCceEEEEECHHHHhhcccCCChHHH
Confidence 56655 8999999999998866 332 2479999999999 7999 9999999877665441
Q ss_pred -----cCCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCCcE-EeeC-CCCC-eEEEEEccCC
Q psy13354 253 -----VFPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRGIR-IVSG-GTKS-HIILVDLRNK 323 (1342)
Q Consensus 253 -----~~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g~~-~~~~-~~~~-~~v~i~~~~~ 323 (1342)
......++|+.+...++..++..+.++ +++.+.++..+.++++++.|++.|+. .+.. .... .++.+.+++.
T Consensus 226 ~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~ 305 (360)
T PRK05355 226 YKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE 305 (360)
T ss_pred HHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh
Confidence 111234788888899999888888777 79999999999999999999998853 2111 1122 3466666654
Q ss_pred CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 324 KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+..++...+ .+.|+.+.... .. .+.+|+|+..+++.
T Consensus 306 ~~~~~~~~~~-~~~Gi~~~~~~----~~----~g~vRiS~~~~nt~ 342 (360)
T PRK05355 306 ELDKKFLAEA-KAAGLVGLKGH----RS----VGGMRASIYNAMPL 342 (360)
T ss_pred HHHHHHHHHH-HHCCCcccCCC----Cc----cCcEEEECCCCCCH
Confidence 2223333444 45699873321 11 25699999888774
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.4e-15 Score=175.23 Aligned_cols=217 Identities=20% Similarity=0.176 Sum_probs=153.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++...++|+ .+++++|.+++++++ ||+.|+..++.++++|||+|+++...|++.+... ..+...|+.+ ..++
T Consensus 62 ~p~~~~le~----~lA~l~g~~~av~~~-sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v--~~vd 134 (389)
T PRK05968 62 NPTVRAFEE----MLAKLEGAEDARGFA-SGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEV--DYVD 134 (389)
T ss_pred ChhHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceE--EEeC
Confidence 444556666 999999999888887 9999999999999999999998887776544333 3445567644 4344
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++++++.+ + ++++|++.++.++ ...++++|+++|++||++||+|++|+.+.... +.. .+|++
T Consensus 135 ~~-----d~~~l~~~i-~-~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~-----p~~~g~Div 202 (389)
T PRK05968 135 GR-----DEEAVAKAL-P-GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQR-----PITLGVDLV 202 (389)
T ss_pred CC-----CHHHHHHhc-c-cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccC-----chhcCCcEE
Confidence 33 889999887 3 3566666555444 44599999999999999999999987665322 222 36999
Q ss_pred EecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
+.|++|+++|+. ||++++++++++.++....++. ++..++..+++. ...+. .+..+.++..+++.++.+.|+
T Consensus 203 v~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~-g~~~~~~~A~~~---l~~L~-tl~~r~~~~~~~a~~la~~L~ 277 (389)
T PRK05968 203 IHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYL-GAKLSPFEAWLL---LRGLR-TLPLRMKAHEASALEIARRLK 277 (389)
T ss_pred EeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhC-CCCCChHHHHHH---HcccC-cHHHHHHHHHHHHHHHHHHHH
Confidence 999999997653 5999988888877765322222 223344444332 22333 556678888999999999998
Q ss_pred hC-CcEEee
Q psy13354 301 QR-GIRIVS 308 (1342)
Q Consensus 301 ~~-g~~~~~ 308 (1342)
+. ++..+.
T Consensus 278 ~~p~v~~v~ 286 (389)
T PRK05968 278 AHPVVERVC 286 (389)
T ss_pred hCCCccEEE
Confidence 85 454333
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-14 Score=174.17 Aligned_cols=258 Identities=14% Similarity=0.134 Sum_probs=161.9
Q ss_pred hhHHHHHHhhccCCCCccccccchhhHHHHHHHHH----cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCC---C
Q psy13354 374 LEIIKVVLARKYRPSNFNTLIGQNHISKSLINALD----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGN---G 446 (1342)
Q Consensus 374 ~d~~~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~----~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~---~ 446 (1342)
.+....+|..-|.| +.|+|++..++.|...|. .....++++++|+||||||++++.+.+.|........ .
T Consensus 741 ~~~A~rvL~~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f 817 (1164)
T PTZ00112 741 TDKAIRMMQLDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSF 817 (1164)
T ss_pred HHHHHHHcCcccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCc
Confidence 33445567777888 679999888877766653 3333456679999999999999999998852110000 0
Q ss_pred CcccCCCCCCcchhhhccCCCccEEEEccCCC-cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcC
Q psy13354 447 GITSQPCGKCSVCVKIDNGCFMDYIEMDAAST-RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEE 525 (1342)
Q Consensus 447 ~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~-~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~ 525 (1342)
.+.+.+|........+.....-.+........ ...+.+..++..... ......||+|||+|.|.....+.|+.+++.
T Consensus 818 ~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k--~~r~v~IIILDEID~L~kK~QDVLYnLFR~ 895 (1164)
T PTZ00112 818 NVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK--DNRNVSILIIDEIDYLITKTQKVLFTLFDW 895 (1164)
T ss_pred eEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc--ccccceEEEeehHhhhCccHHHHHHHHHHH
Confidence 11123332211111100000000000000000 001122222222211 112234899999999976555667666553
Q ss_pred ---CCCcEEEEEEeCCC---CCChHHHhccEE--EEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH---hcCCcH
Q psy13354 526 ---PPKYIKFILATTEP---QKIPITVLSRCI--QFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT---GAQGSM 594 (1342)
Q Consensus 526 ---p~~~~vlIl~t~~~---~kl~~~L~sR~~--~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~---~~~g~l 594 (1342)
....+++|+++|.. ..+.+.+++|+. .+.|+|++.+++.++|..++......+++++++++|+ ..+||+
T Consensus 896 ~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDA 975 (1164)
T PTZ00112 896 PTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDI 975 (1164)
T ss_pred hhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHH
Confidence 34567788888763 466789999983 5899999999999999999987655699999999998 668999
Q ss_pred HHHHHHHHHHHhhcC-CCCCHHHHHHHhccCcHHHHHHHHHHH
Q psy13354 595 RDALSLTDQAINYSS-EKITLNSMQEMLSIIDQKYLIQILDAL 636 (1342)
Q Consensus 595 r~a~~~L~kl~~~~~-~~It~e~V~~~v~~~~~~~if~l~dal 636 (1342)
|.|+++|..+..... ..|+.++|.+++.......+.+.+..+
T Consensus 976 RKALDILRrAgEikegskVT~eHVrkAleeiE~srI~e~IktL 1018 (1164)
T PTZ00112 976 RKALQICRKAFENKRGQKIVPRDITEATNQLFDSPLTNAINYL 1018 (1164)
T ss_pred HHHHHHHHHHHhhcCCCccCHHHHHHHHHHHHhhhHHHHHHcC
Confidence 999999999887653 359999999888655444444444333
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-14 Score=169.99 Aligned_cols=278 Identities=14% Similarity=0.100 Sum_probs=173.5
Q ss_pred CceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHH
Q psy13354 28 NNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQ 103 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~ 103 (1342)
..+.+.+|+|+++++ ...+ ..+ +.| +. . . ..+++.+++++|.. +.+++++|+++++.
T Consensus 25 ~~i~ls~Nenp~~~~~~~~~~--~~~-~~Y----p~-------~---~--~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~ 85 (339)
T PRK06959 25 AWLDLSTGINPHGYPVPPVPA--DAW-RRL----PE-------D---D--DGLAACAARYYGAPDAAHVLPVAGSQAAIR 85 (339)
T ss_pred hhceeccCCCCCCCCCCCCCH--HHH-HhC----CC-------c---h--HHHHHHHHHHhCCCCcccEEECcCHHHHHH
Confidence 458899999997765 2211 222 222 21 1 1 23455899999985 45666646667877
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.+. .++.+|| |++..+ ++..+.......|. ++++++.++ +.+. + ..+++++++|+|| ...
T Consensus 86 ~l~-~~~~~g~-v~v~~P---~y~~y~~~~~~~g~--~~~~v~~~~------~~~~----~-~~~~v~l~nPnNPTG~~~ 147 (339)
T PRK06959 86 ALP-ALLPRGR-VGIAPL---AYSEYAPAFARHGH--RVVPLDEAA------DTLP----A-ALTHLIVVNPNNPTAERL 147 (339)
T ss_pred HHH-HhcCCCe-EEEcCC---CcHHHHHHHHHCCC--EEEeecccc------hhcc----c-cCCEEEEeCCCCCCCCCC
Confidence 554 4578887 665554 44444445566676 555555442 2221 1 2245555566666 222
Q ss_pred ---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccC
Q psy13354 182 ---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 182 ---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~ 254 (1342)
.+++|++.|.+++.++|+||+|........ .....+. --++++||||.| |.+| ||+++++++++.+.....
T Consensus 148 s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s-~~~~~~~~~vi~l~SfSK~~-gl~GlRiGy~v~~~~li~~l~~~~~ 225 (339)
T PRK06959 148 PAARLLRWHAQLAARGGTLIVDEAFADTLPAAS-LAAHTDRPGLVVLRSVGKFF-GLAGVRAGFVLAAPALLAALRDALG 225 (339)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCCccCCCccc-chhccCCCCEEEEecChhhc-CCcchheEEEecCHHHHHHHHHhcC
Confidence 455666667788999999999875432111 0011111 137889999999 7777 999999999999987655
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
++..+ .+.+.++..++.+ .++.+..++.+.++++++.+.|++.|+++. ...+++|++++ .+.++...++
T Consensus 226 ~~~vs---~~~q~a~~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~---~~~~f~~~~~~---~~~~l~~~l~ 294 (339)
T PRK06959 226 AWTVS---GPARHAVRAAFAD--AAWQAAMRERLAADGARLAALLRAHGFAVH---ATPLFSWTDDP---RAAALHAALA 294 (339)
T ss_pred CCCCc---HHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHCCCCcc---CcceEEEEeCC---CHHHHHHHHH
Confidence 54432 3455555544432 236677789999999999999999988763 24578888865 2345555555
Q ss_pred HHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++||.+..+ +. .+++|++++.
T Consensus 295 -~~GI~vr~~---~~------~~~lRisi~~ 315 (339)
T PRK06959 295 -RRGIWTRYF---AP------PPSVRFGLPA 315 (339)
T ss_pred -hCCeEEEEC---CC------CCeEEEECCC
Confidence 559999753 11 2469999853
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-14 Score=168.58 Aligned_cols=247 Identities=17% Similarity=0.163 Sum_probs=166.3
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++....||+ .++++.|.+++++++ ||++|+..++.++++|||+|++++..+++...... .+...|+.+.. +
T Consensus 48 gnPt~~~lE~----~lA~l~g~~~~~~~~-sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~--~ 120 (377)
T TIGR01324 48 GTLTHFALQD----AMCELEGGAGCYLYP-SGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITY--Y 120 (377)
T ss_pred CCccHHHHHH----HHHHHhCCCcEEEEC-cHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEE--E
Confidence 4566677777 889999998888877 99999999999999999999987766654332222 23445664433 3
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.+ +.+.+++++++. +++|++..++++ ...|+++|+++|+++|+++|+|++|+.|.... +++ .+|+
T Consensus 121 d~~-----~~e~l~~~i~~~-tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~-----pl~~gaDi 189 (377)
T TIGR01324 121 DPL-----IGEDIATLIQPN-TKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFK-----PLEHGVDI 189 (377)
T ss_pred CCC-----CHHHHHHhcCCC-ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccC-----ccccCceE
Confidence 332 237788887764 556665554445 45599999999999999999999998876532 333 4799
Q ss_pred EEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
+++|++|+++|+. ||+++++++..+.+... ...+|....|..+..... .++ .+..+.++..+++..+.+.|
T Consensus 190 vv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~--~~~~G~~l~p~~a~~~~r---gl~-tl~~R~~~~~~~a~~la~~L 263 (377)
T TIGR01324 190 SIQAGTKYLVGHSDIMIGTVVANARTWDQLREH--SYLMGQMVDADDAYTTLR---GLR-TLGVRLKQHQESSLAIAKWL 263 (377)
T ss_pred EEecCceeccCCCCceEEEEEeCHHHHHHHHHH--HHHhCCCCCHHHHHHHHh---hhh-hHHHHHHHHHHHHHHHHHHH
Confidence 9999999997654 49999988777766542 234455545544433222 222 44456788899999999999
Q ss_pred HhCC-c-EEeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 300 DQRG-I-RIVSGG---------------TKSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 300 ~~~g-~-~~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
++.. + ++..+. ..+.++.+.+++. ..+.+.++++.-.+
T Consensus 264 ~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~--~~~~~~~~~~~l~~ 318 (377)
T TIGR01324 264 SEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRL--TQKQVHAFLDHLQL 318 (377)
T ss_pred HhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCC--CHHHHHHHHHhCCc
Confidence 8853 2 222211 2245677777532 23445566665443
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=155.26 Aligned_cols=298 Identities=19% Similarity=0.187 Sum_probs=202.6
Q ss_pred HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc-CCCCEEEEeec
Q psy13354 43 VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL-NPGDTIMGMSL 121 (1342)
Q Consensus 43 v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~-~pGD~Vlv~~~ 121 (1342)
.+++|.++.. ++..|+..+....||+ ..++++|.+...+++ |||.+|..+++.-+ +||.+|++-+.
T Consensus 38 Mr~am~eA~v--------gDdVyGeD~tt~rLE~----~vA~l~GKEAgLFv~-SGTmgNllaIm~Hc~~rg~eii~gd~ 104 (384)
T KOG1368|consen 38 MRRAMAEASV--------GDDVYGEDPTTNRLEQ----RVAELFGKEAGLFVP-SGTMGNLLAIMVHCHQRGSEIIVGDR 104 (384)
T ss_pred HHHHHhhccc--------CcccccCCccHHHHHH----HHHHHhCccceeeec-ccccccHHHHHHHhcCCCceEEeccc
Confidence 6666665542 3445666777778888 899999988777777 99999999999876 49999997554
Q ss_pred cCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-------CeEEEEcCCCC--C----cccCHHHHHH
Q psy13354 122 QEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-------PKLIIAGASAY--S----QYIDFERFYH 188 (1342)
Q Consensus 122 ~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-------~~liv~~~s~~--~----~~~~l~~I~~ 188 (1342)
.|-..+-.+....+.|. .+.++...+++.+|++++++.+...+ .++|.+.++.+ + +...++++.+
T Consensus 105 ~HI~~~E~gg~s~l~gv--~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~ 182 (384)
T KOG1368|consen 105 AHIHRYEQGGISQLAGV--HVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKA 182 (384)
T ss_pred hheeehhccChhhhccc--eeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHH
Confidence 44333333333344455 55666667889999999999998432 36777766554 3 2235778899
Q ss_pred HHHHcCCEEEEEcccchhhhhc-CCCCC-CCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccCCcHHHH
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAA-GEYPN-PVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVI 266 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~-~~~~~-~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~ 266 (1342)
+|++||+.|++|+|..+.+-.. +.... ....+|.+..-+||.+++|-|.++++++++++..+..+.....|.-.+...
T Consensus 183 lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSViVG~k~FI~kA~~~RKalGGGmRQsGvL 262 (384)
T KOG1368|consen 183 LAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVIVGSKDFIDKARHFRKALGGGMRQSGVL 262 (384)
T ss_pred HHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEEEccHHHHHHHHHHHHHhcCchhHHHHH
Confidence 9999999999999865432211 11000 011258888889999999999999999999887665433333222222233
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeecc
Q psy13354 267 AAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 267 ~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
+|+++. .+.+ .+. ....-.+.+..+.+.+...+ +++..+...++++.+.+.....+.+.+...++++||.+.+.
T Consensus 263 aaaaLv--al~~-~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~- 337 (384)
T KOG1368|consen 263 AAAALV--ALDE-NVP-LLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQARLTAEELCKFLEKNGILLMGG- 337 (384)
T ss_pred HHHHHH--Hhhc-chH-HHHHHHHHHHHHHHHhccccceeeecchhhcceeeeecccccCCHHHHHHHHHHCCeEEeec-
Confidence 333322 2222 333 34445666777888887765 77766557788999888888888888888888999998743
Q ss_pred CCCCCCCccccccccccccccccc
Q psy13354 346 IPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 346 ~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
. ..++|+.+...-+.
T Consensus 338 ---~------s~r~Rivlh~Qvt~ 352 (384)
T KOG1368|consen 338 ---A------SRRIRIVLHHQVTD 352 (384)
T ss_pred ---c------ccceEEEEEEecCH
Confidence 1 24589998887654
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-14 Score=170.01 Aligned_cols=249 Identities=21% Similarity=0.225 Sum_probs=169.8
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++....||+ .+++++|.+.+++++ ||+.|+..++.+++.+||+|++....|++.+... ..+...|+ .+..+
T Consensus 57 ~~p~~~~le~----~lA~l~g~~~av~~~-sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~--~~~~v 129 (391)
T TIGR01328 57 GNPTVSNLEG----RIAFLEGTEAAVATS-SGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGI--QVDFI 129 (391)
T ss_pred CCchHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe--EEEEE
Confidence 3455566666 999999999887777 9999999999999999999998876666544333 33445565 44444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.+ |++++++.+++ ++++|+++.+++| ...|+++|+++|+++|+++|+|++|+.+.... ++. .+|+
T Consensus 130 d~~-----d~e~l~~~i~~-~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~-----~~~~g~Di 198 (391)
T TIGR01328 130 NMA-----IPEEVKAHIKD-NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTN-----PVALGVDV 198 (391)
T ss_pred CCC-----CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCC-----chhcCCCE
Confidence 554 78999998876 4566666666555 45599999999999999999999998654421 222 4799
Q ss_pred EEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
+++|++|+++++. ||++++++++++.++........++..++..+++... .++ .+..+.++..+++.++.+.|
T Consensus 199 vv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~---~L~-tl~~r~~~~~~na~~la~~L 274 (391)
T TIGR01328 199 VVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILR---GLK-TLNIRMKRHSENAMKVAEYL 274 (391)
T ss_pred EEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHh---CcC-cHHHHHHHHHHHHHHHHHHH
Confidence 9999999996543 5899999988887764322222233344444443332 222 44566788899999999999
Q ss_pred HhCC-cEEee-CC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCce
Q psy13354 300 DQRG-IRIVS-GG---------------TKSHIILVDLRNKKITGKIAESILESANII 340 (1342)
Q Consensus 300 ~~~g-~~~~~-~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~ 340 (1342)
++.. +..+. ++ ..+.++.+.+++ +.+.+.++++.-.+.
T Consensus 275 ~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~---~~~~~~~f~~~l~~~ 329 (391)
T TIGR01328 275 KSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKG---GFAGAKKLLNNLKLI 329 (391)
T ss_pred HhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCC---CHHHHHHHHHhCCcc
Confidence 8853 33222 11 113366677653 235566777665544
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-14 Score=181.26 Aligned_cols=285 Identities=17% Similarity=0.165 Sum_probs=191.4
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHH---HHHHHHHHHccCC-CC----EEEEeeccCCccchhhHHhhhCCce
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGS---QANQAVFFSVLNP-GD----TIMGMSLQEGGHLTHGMMLNMSGKW 139 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs---~A~~~al~al~~p-GD----~Vlv~~~~~~~~~s~~~~~~~~g~~ 139 (1342)
..++.++...+++++++++|.+.+++.+++|+ .|+..++.++..+ || +|+++...|++....+.. .|.
T Consensus 563 ~~g~~~~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~---~G~- 638 (993)
T PLN02414 563 AQGYQEMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAM---CGM- 638 (993)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHH---CCC-
Confidence 56677888889999999999987777775554 4888888888766 88 899888888877655533 455
Q ss_pred eEEEEecCCCCCCCCHHHHHHHHHhcC--CeE-EEEcCCCCCccc-CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC
Q psy13354 140 FNSICYGLNKKEKIDYKKVEYLAKKNK--PKL-IIAGASAYSQYI-DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN 215 (1342)
Q Consensus 140 ~~~v~~~~~~~~~id~e~Le~~i~~~~--~~l-iv~~~s~~~~~~-~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~ 215 (1342)
+++.++.+++|.+|+++|++++++++ .++ ++.++++..... |+++|+++||++|+++++|++|..+.... ..
T Consensus 639 -~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l---~~ 714 (993)
T PLN02414 639 -KIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGL---TS 714 (993)
T ss_pred -EEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCc---CC
Confidence 66666777889999999999998633 344 445556665444 79999999999999999999998765321 11
Q ss_pred CCC-CCcEEEecCCccCCCCCe------eEEEEechhHHHHhhcc-----------CCccccCC---c--H-HHHHHHHH
Q psy13354 216 PVP-FADFITSTTHKSLRGPRG------GFILMKKKYKKIINSAV-----------FPGIQGGP---L--M-HVIAAKAV 271 (1342)
Q Consensus 216 ~l~-~~Divv~S~sK~l~gp~G------G~iv~~~~l~~~l~~~~-----------~~~~~~~~---~--~-~~~~Aaa~ 271 (1342)
+.+ .+|++++|.||+|++|.| |++++++.+...+-... .....++. . + ....++..
T Consensus 715 p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~ 794 (993)
T PLN02414 715 PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYT 794 (993)
T ss_pred ccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHH
Confidence 222 389999999999976653 89999887665543210 00111220 1 1 11122222
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC-C--CeEEEEEccCC-----CCCHHHHHHHHHHCCceeee
Q psy13354 272 AFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT-K--SHIILVDLRNK-----KITGKIAESILESANIICNK 343 (1342)
Q Consensus 272 al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~-~--~~~v~i~~~~~-----~~~~~~~~~ll~~~GI~v~~ 343 (1342)
-+..+..+++++..++...+++|+.+.|.+ ++++....+ + .|-+.+.++.. ....++...|+ ++||....
T Consensus 795 yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~-d~Gihapt 872 (993)
T PLN02414 795 YIAMMGSEGLTDASKIAILNANYMAKRLEG-HYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLM-DYGFHAPT 872 (993)
T ss_pred HHHHHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHH-HcCcEEee
Confidence 233444567877888999999999999987 444433211 1 12334444421 12356777777 67999877
Q ss_pred ccCCCCCCCccccccccccccccccc
Q psy13354 344 NSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 344 ~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
..+|. .+.+|++.+...+.
T Consensus 873 ~~~pv-------~~~lmiepTE~~sk 891 (993)
T PLN02414 873 MSWPV-------PGTLMIEPTESESK 891 (993)
T ss_pred ecccc-------CCEEEEEeeeeCCH
Confidence 55442 24699988887664
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-13 Score=168.48 Aligned_cols=300 Identities=17% Similarity=0.205 Sum_probs=190.7
Q ss_pred CCcchHHHHHHHHHHHHHHHhCCC--------------CceEecCCHHHHHHHHHHHcc----C----------------
Q psy13354 66 GGCKFIDLIEKIAINRLKKIFNAE--------------AANVQPHSGSQANQAVFFSVL----N---------------- 111 (1342)
Q Consensus 66 ~~~~~~~~Le~~~~~~la~~~g~~--------------~~vi~~~sGs~A~~~al~al~----~---------------- 111 (1342)
...+...++|+.+.+|++++++.. ..-++++|||.|+..++.+.- .
T Consensus 122 ~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~ 201 (522)
T TIGR03799 122 ETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAA 201 (522)
T ss_pred ecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhh
Confidence 456677799999999999998521 123445599999998876641 1
Q ss_pred ------CCCEEEEeeccCCccchhhHHhhhCCcee-EEEEecCCCCCCCCHHHHHHHHHh----cC-CeEEEEcCC--CC
Q psy13354 112 ------PGDTIMGMSLQEGGHLTHGMMLNMSGKWF-NSICYGLNKKEKIDYKKVEYLAKK----NK-PKLIIAGAS--AY 177 (1342)
Q Consensus 112 ------pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~-~~v~~~~~~~~~id~e~Le~~i~~----~~-~~liv~~~s--~~ 177 (1342)
++..|+++. .+|.+........|.+. +++.++.++++.+|+++|++.+.+ .+ +.+|+.+.+ ..
T Consensus 202 ~~~~~~~~~~v~~S~---~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~t 278 (522)
T TIGR03799 202 LKHYGYDGLAILVSE---RGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTET 278 (522)
T ss_pred hhhccCCceEEEECC---CchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCC
Confidence 123455444 55666667767777632 345567788899999999998863 22 233332222 23
Q ss_pred CcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC---CCCCCCcEEEecCCccCCCCCe-eEEEEec-hhHHHHhhc
Q psy13354 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP---NPVPFADFITSTTHKSLRGPRG-GFILMKK-KYKKIINSA 252 (1342)
Q Consensus 178 ~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~---~~l~~~Divv~S~sK~l~gp~G-G~iv~~~-~l~~~l~~~ 252 (1342)
+...|+++|+++|+++|+|+++|+||+.+......+. .-+..+|+++.++|||+.+|.| |+++.++ ...+.+...
T Consensus 279 GaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~ 358 (522)
T TIGR03799 279 GNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHH 358 (522)
T ss_pred CCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccC
Confidence 3667999999999999999999999986554222111 1123579999999999989999 9888765 444433321
Q ss_pred c-----------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEc
Q psy13354 253 V-----------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 253 ~-----------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~ 320 (1342)
. ..+...++.......+..++..+...+++.+.++..++++++.+.|.+. +++++.++ ..+++.+++
T Consensus 359 ~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p-~l~iv~Fr~ 437 (522)
T TIGR03799 359 AEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEP-ELCLLTYRY 437 (522)
T ss_pred cchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCC-CccEEEEEE
Confidence 0 0011112222223356667776666789999999999999999999885 79887743 445666665
Q ss_pred cCCCC----------------------CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 321 RNKKI----------------------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 321 ~~~~~----------------------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+... +..+.+++.++..++++............+...+|+++.+..|.
T Consensus 438 ~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt 508 (522)
T TIGR03799 438 VPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTT 508 (522)
T ss_pred eChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCC
Confidence 32210 12444445555555565544321110000013589999877663
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-13 Score=165.32 Aligned_cols=301 Identities=16% Similarity=0.134 Sum_probs=205.6
Q ss_pred eeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHH
Q psy13354 31 ELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 31 ~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~a 108 (1342)
.+..++..+++.+.+++...+.... .. ....+...++|+.+..+++++++.+ ..-.++.+||+|++.++.+
T Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~nl----~d---~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~a 138 (460)
T COG0076 66 LAGFCPTRVPPVAAELLVSALNKNL----GD---PDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLA 138 (460)
T ss_pred EEccCCCCCHHHHHHHHHHHHhhcC----CC---cccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHH
Confidence 3445556666667777777664222 11 1223466699999999999999985 3345566999999988877
Q ss_pred ccC-----CC---C------EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCe--EEEE
Q psy13354 109 VLN-----PG---D------TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPK--LIIA 172 (1342)
Q Consensus 109 l~~-----pG---D------~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~--liv~ 172 (1342)
.-. .+ . .|+ .+..+|++..+.+...|.+.+.++.... +.++|++++++++.+.+.. ++-+
T Consensus 139 ar~~~~~~~~~~~~~~~~~P~ii---~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~ 214 (460)
T COG0076 139 ARERWRKRALAESGKPGGKPNIV---CSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGT 214 (460)
T ss_pred HHHHHHHHhhhcccccCCCCeEE---ecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEE
Confidence 621 11 1 466 3447889999999999998888866544 7899999999999987765 4443
Q ss_pred cCCC-CCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC----CCCCcEEEecCCccCCCCCe-eEEEEech--
Q psy13354 173 GASA-YSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP----VPFADFITSTTHKSLRGPRG-GFILMKKK-- 244 (1342)
Q Consensus 173 ~~s~-~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~----l~~~Divv~S~sK~l~gp~G-G~iv~~~~-- 244 (1342)
..+. .....|+++|+++|+++++|++||+|++............ ++.+|.++.++||++..|.| |+++.++.
T Consensus 215 aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~ 294 (460)
T COG0076 215 AGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEA 294 (460)
T ss_pred ecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHH
Confidence 3322 3366799999999999999999999987554432222222 33589999999999988988 88888874
Q ss_pred hHHHHhhccCCcc----------ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCC
Q psy13354 245 YKKIINSAVFPGI----------QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKS 313 (1342)
Q Consensus 245 l~~~l~~~~~~~~----------~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~ 313 (1342)
+.+.+.. ..++. .++.+.....++.+.+..+..+++.++.++..++++++.+.|++.| +++...| ..
T Consensus 295 l~~~~~~-~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p-~l 372 (460)
T COG0076 295 LRRILIF-ADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEP-EL 372 (460)
T ss_pred hhhhhhc-ccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCC-cc
Confidence 4333331 11111 1222222445556666666667999999999999999999999987 8887643 56
Q ss_pred eEEEEEccCCCCCHHHHHHHHHHCCceeeec
Q psy13354 314 HIILVDLRNKKITGKIAESILESANIICNKN 344 (1342)
Q Consensus 314 ~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~ 344 (1342)
+++.++.++...........+++.|..+...
T Consensus 373 ~~V~fr~~~~~~~~~~~~~~~~~~gw~v~~~ 403 (460)
T COG0076 373 PIVAFRLKDDEDTLADLSERLDRRGWQVPAQ 403 (460)
T ss_pred ceEEEEcCCcccchhchHHHHHhcCceeecc
Confidence 7788887554321223333344457777644
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=174.15 Aligned_cols=214 Identities=21% Similarity=0.257 Sum_probs=154.9
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++...+|++ .+++++|.+++++++ ||+.|+..++.++++|||+|+++...|+..+... ..+...|+ +++.+
T Consensus 62 ~~p~~~~Le~----~iA~~~g~~~~l~~~-sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~v 134 (400)
T PRK06234 62 GNPTSTEVEN----KLALLEGGEAAVVAA-SGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV--EVTFV 134 (400)
T ss_pred CCccHHHHHH----HHHHHhCCCcEEEEc-CHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe--EEEEE
Confidence 4566667777 889999988777777 9999999999999999999998887676554433 23455566 45555
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC-CC
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP-FA 220 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~-~~ 220 (1342)
+.+ |++++++++++. +++|+++.+++| ...++++|+++|+++ |++||+|++|+.+... .++. .+
T Consensus 135 d~~-----d~e~l~~~i~~~-tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~-----~~l~~g~ 203 (400)
T PRK06234 135 DTS-----NLEEVRNALKAN-TKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQ-----RPLQLGA 203 (400)
T ss_pred CCC-----CHHHHHHHhccC-CeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcC-----CchhhCC
Confidence 543 899999998764 566666666665 555999999999997 9999999999876542 1222 47
Q ss_pred cEEEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q psy13354 221 DFITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297 (1342)
Q Consensus 221 Divv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~ 297 (1342)
|++++|++|+++|+. |||+++++++++.++........+...++..+++.... +. .+..+.++..+++.++.+
T Consensus 204 Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~---l~-tl~~r~~~~~~na~~~a~ 279 (400)
T PRK06234 204 DVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRG---MK-TLQIRMEKHCKNAMKVAK 279 (400)
T ss_pred cEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhc---cC-cHHHHHHHHHHHHHHHHH
Confidence 999999999996543 59999999888877643222233444455555443322 22 455677888899999999
Q ss_pred HHHhC
Q psy13354 298 ILDQR 302 (1342)
Q Consensus 298 ~L~~~ 302 (1342)
.|++.
T Consensus 280 ~L~~~ 284 (400)
T PRK06234 280 FLESH 284 (400)
T ss_pred HHHcC
Confidence 99875
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=173.98 Aligned_cols=214 Identities=19% Similarity=0.223 Sum_probs=152.0
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++....+++ .++++.|.+++++++ ||+.|+..++.++++|||+|++....+++.+... ..+...|+ ++..++
T Consensus 64 ~p~~~~le~----~lA~l~g~~~~i~~~-sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~--~v~~vd 136 (403)
T PRK07503 64 NPTLALLEQ----RMASLEGGEAAVALA-SGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGV--TVRHVD 136 (403)
T ss_pred CchHHHHHH----HHHHHhCCCcEEEEc-CHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCE--EEEEeC
Confidence 444556666 899999998887777 9999999999999999999998776665443322 23445565 445445
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++.+++++++ ++++|++..+++| ...|+++|+++|+++|++||+|++|+.+... .++. .+|++
T Consensus 137 ~~-----d~~~l~~~i~~-~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~-----~~l~~g~Di~ 205 (403)
T PRK07503 137 LT-----DPAALKAAISD-KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQ-----RPLELGADLV 205 (403)
T ss_pred CC-----CHHHHHHhcCc-cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC-----CchhhCCCEE
Confidence 43 78999998876 4566666555555 4459999999999999999999999765331 1222 46999
Q ss_pred EecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
++|++|+++|+. ||+++.++++.+.++........+..+++..+++.... ++ .+..+.++..+++..+.+.|.
T Consensus 206 v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~---L~-tl~~r~~~~~~na~~~a~~L~ 281 (403)
T PRK07503 206 VHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRG---LK-TLALRMDRHCASAQAVAEWLA 281 (403)
T ss_pred EccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcC---cc-hHHHHHHHHHHHHHHHHHHHH
Confidence 999999996543 59999888888877642222233444455555443332 22 455567778899999999998
Q ss_pred hCC
Q psy13354 301 QRG 303 (1342)
Q Consensus 301 ~~g 303 (1342)
+..
T Consensus 282 ~~p 284 (403)
T PRK07503 282 RHP 284 (403)
T ss_pred hCC
Confidence 753
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=173.64 Aligned_cols=212 Identities=19% Similarity=0.204 Sum_probs=150.6
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~ 146 (1342)
+++...++|+ .+++++|.+++++++ ||+.|+..++.++++|||+|+++...|++.......+...|. .+..+.
T Consensus 51 ~np~~~~lE~----~lA~l~g~~~~l~~~-sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~--~v~~~~ 123 (385)
T PRK08574 51 ENPTLRPLEE----ALAKLEGGVDALAFN-SGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGV--KVVLAY 123 (385)
T ss_pred CCccHHHHHH----HHHHHhCCCcEEEeC-CHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCc--EEEEEC
Confidence 4566667777 899999998888887 999999999999999999999887777665444433344455 333222
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
+|++++++++++.++++|+++.+++| ...|+++|+++|+++|++||+|++|+.+.... ++. .+|++
T Consensus 124 ------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~-----~l~~GaDiv 192 (385)
T PRK08574 124 ------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYR-----PLRHGADFV 192 (385)
T ss_pred ------CCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCC-----hhhhCCcEE
Confidence 36889999887645677777666666 45599999999999999999999997665422 222 37999
Q ss_pred EecCCccCCCCC---eeEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|++|+++|+. ||++++ ++++.+.++..... ++....+..+++.... + +.+..+.++..+++.++.+.|
T Consensus 193 v~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~--~g~~~~p~~a~l~l~~---l-~tL~~R~~~~~~na~~la~~L 266 (385)
T PRK08574 193 VHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRR--LGTIMQPFEAYLVLRG---L-KTLEVRFERQCRNAMAIAEFL 266 (385)
T ss_pred EeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHh--cCCCCCHHHHHHHHcc---c-CcHHHHHHHHHHHHHHHHHHH
Confidence 999999996653 585555 56777766543222 3333444444333222 2 245567788899999999999
Q ss_pred HhC
Q psy13354 300 DQR 302 (1342)
Q Consensus 300 ~~~ 302 (1342)
++.
T Consensus 267 ~~~ 269 (385)
T PRK08574 267 SEH 269 (385)
T ss_pred HcC
Confidence 875
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=169.80 Aligned_cols=309 Identities=14% Similarity=0.123 Sum_probs=194.3
Q ss_pred eeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCc---chHHHHHHHHHHHHHHHhCCC--C-ceEecCCHHHHHHH
Q psy13354 31 ELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGC---KFIDLIEKIAINRLKKIFNAE--A-ANVQPHSGSQANQA 104 (1342)
Q Consensus 31 ~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~---~~~~~Le~~~~~~la~~~g~~--~-~vi~~~sGs~A~~~ 104 (1342)
.+.+++...|+.|++++.+.+.+ +. +.++..+..+ ....++.+++++.+++++|++ + ++++++|||.|++.
T Consensus 2 ~~~pGp~~~p~~V~~a~~~~~~~-~~--~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~ 78 (355)
T cd00611 2 NFSAGPAALPEEVLEQAQKELLD-FN--GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAA 78 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHhh-cc--cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence 47788999999999999988743 32 3333333323 334466677899999999973 4 44455459999999
Q ss_pred HHHHccC---CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCC-C-HHHHHHHHHhcCCeEEEEcCCCCCc
Q psy13354 105 VFFSVLN---PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKI-D-YKKVEYLAKKNKPKLIIAGASAYSQ 179 (1342)
Q Consensus 105 al~al~~---pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~i-d-~e~Le~~i~~~~~~liv~~~s~~~~ 179 (1342)
++.+++. +||+|++.. ++.+ .....+..|..++.+.. ++++.+ + ++..+..+++.+..+.+.+.++.++
T Consensus 79 ~~~~l~~~~~~~~~i~~g~--~~~~--~~~~a~~~g~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG 152 (355)
T cd00611 79 VPLNLLGDKGTADYVVTGA--WSAK--AAKEAKRYGGVVVIVAA--KEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHG 152 (355)
T ss_pred HHHhcCCCCCeEEEEECCH--HHHH--HHHHHHhcCCCcEEEec--ccccCCCCCCCHhhcCCCCCCCEEEEeCCccccc
Confidence 9999987 444554211 1111 12234566776666654 322212 3 2222233444333344444444444
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--- 253 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--- 253 (1342)
.. + .++++.||+++++|++|++|.. +++. .|++++|.||++ ||.| |++++++++.+.+....
T Consensus 153 ~~-~---~~i~~~~g~~~~VDa~qs~g~~-------~idv~~~~~~~ss~~K~l-GP~G~g~l~~~~~~~~~~~~~~~~~ 220 (355)
T cd00611 153 VE-F---DEVPDTGGVPLVADMSSNILSR-------PIDVSKFGVIYAGAQKNL-GPAGVTVVIVRKDLLGKARKITPSM 220 (355)
T ss_pred EE-c---ceecccCCCeEEEEccccccCC-------CCCHHHhCEEEeeccccc-CCCceEEEEECHHHHhhcccCCCCc
Confidence 43 2 2455669999999999999877 4432 466777799998 8999 99999998776544321
Q ss_pred --------CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhC-CcE-EeeC-CCCC-eEEEEEc
Q psy13354 254 --------FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQR-GIR-IVSG-GTKS-HIILVDL 320 (1342)
Q Consensus 254 --------~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~-g~~-~~~~-~~~~-~~v~i~~ 320 (1342)
.....++|+.+...++.+++..+.+. +++.+.++..++++++++.|++. |+. .... .... .++.+.+
T Consensus 221 ~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~ 300 (355)
T cd00611 221 LNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRL 300 (355)
T ss_pred ccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEc
Confidence 11124677888888888888877776 69999999999999999999998 752 2111 1122 3456666
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++..+..+... .+.+.|+.+... +.. .+.+|+|+..+++.
T Consensus 301 ~~~~l~~~~~~-~~~r~G~~~~~~----~~~----~g~vR~S~~~~nt~ 340 (355)
T cd00611 301 GKEELEKEFLK-EAEAAGMIGLKG----HRS----VGGIRASIYNALSL 340 (355)
T ss_pred CChhhhHHHHH-HHHHCCCcccCC----Ccc----cCeEEEEccCCCCH
Confidence 55322223333 344569964322 111 24699999888774
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-14 Score=167.74 Aligned_cols=251 Identities=18% Similarity=0.208 Sum_probs=169.2
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchh-hHHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTH-GMMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~-~~~~~~~g~~~~~v~~ 145 (1342)
+++...++|+ .++++.|.+++++++ ||+.|+..++.+++++||+|+++...++..+.. ...+...|+. ++.+
T Consensus 68 ~~p~~~~le~----~lA~l~g~~~al~~~-sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~--v~~v 140 (403)
T PRK07810 68 GNPTVSMFEE----RLRLIEGAEACFATA-SGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVE--TVFV 140 (403)
T ss_pred CCchHHHHHH----HHHHHhCCCcEEEEC-ChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcE--EEEE
Confidence 3455666666 899999999888888 999999999999999999999877666544333 3345566774 4444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.+ |+++++++++++ +++|++..++++ ...|+++|+++|+++|++||+|++|+.+.... ++. .+|+
T Consensus 141 d~~-----d~~~l~~ai~~~-tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~-----~~~~gaDi 209 (403)
T PRK07810 141 DGE-----DLSQWEEALSVP-TQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQR-----GLPLGADV 209 (403)
T ss_pred CCC-----CHHHHHHhcCcC-ceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCC-----hhhcCCcE
Confidence 443 899999998764 456666555555 45599999999999999999999998765422 222 3799
Q ss_pred EEecCCccCCCCC---eeEEEEechhHH-HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKYKK-IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l~~-~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+++|++|+++|.. ||+++++++.+. .++.... ..+...++..+++.... +. .+..+.++..+++.++.+.
T Consensus 210 vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~--~~g~~~s~~~a~l~l~~---L~-tl~~R~~~~~~~a~~~a~~ 283 (403)
T PRK07810 210 VVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMR--HTGPALSAFNAWVLLKG---LE-TLALRVRHSNASALRIAEF 283 (403)
T ss_pred EEccCCceecCCcCceeEEEEeChHHHHHHHHHHHH--HhCCCCCHHHHHHHHhc---cC-cHHHHHHHHHHHHHHHHHH
Confidence 9999999995533 599998887554 3432211 22334455555543332 22 5566788899999999999
Q ss_pred HHhCC-cEEee-C-----C----------CCCeEEEEEccCCCC-CHHHHHHHHHHCCcee
Q psy13354 299 LDQRG-IRIVS-G-----G----------TKSHIILVDLRNKKI-TGKIAESILESANIIC 341 (1342)
Q Consensus 299 L~~~g-~~~~~-~-----~----------~~~~~v~i~~~~~~~-~~~~~~~ll~~~GI~v 341 (1342)
|++.. +..+. + + ..+.++.+.++.... +.+.+..+++.-.+..
T Consensus 284 L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~l~l~~ 344 (403)
T PRK07810 284 LEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVID 344 (403)
T ss_pred HhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHhCCceE
Confidence 98853 33222 1 1 224466777754221 2455667776544433
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-14 Score=170.52 Aligned_cols=233 Identities=18% Similarity=0.156 Sum_probs=158.3
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~ 145 (1342)
+.+...+|++ .+++++|.+++++++ ||+.|+..++.++++|||+|++....|++.+..... ....|+ .+..+
T Consensus 59 ~~pt~~~Le~----~lA~l~G~~~al~~~-sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi--~~~~~ 131 (386)
T PRK06767 59 GNPTVKLFEE----RMAVLEGGEEALAFG-SGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMI--THSFC 131 (386)
T ss_pred CCcchHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCe--EEEEe
Confidence 3455566666 899999988887777 999999999999999999999877666655443322 233344 33222
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-CCCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-PFADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~~~Di 222 (1342)
+. .|++++++++++ ++++|+++.+++| ...++++|.++|+++|+++|+|++|+.+.... ++ ..+|+
T Consensus 132 ~~-----~d~~~l~~~i~~-~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~-----pl~~g~Di 200 (386)
T PRK06767 132 DM-----ETEADIENKIRP-NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQR-----PLELGCDA 200 (386)
T ss_pred CC-----CCHHHHHHhhCc-CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCC-----chhcCCcE
Confidence 32 278999998875 4567776666666 45599999999999999999999987544321 22 24799
Q ss_pred EEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
+++|++|+++|+. ||+++++++.++.+...... ..++..++..+++. ...+. .+..+.++..+++.++.+.|
T Consensus 201 v~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~-~~g~~~~~~~a~l~---~~~L~-tl~~r~~~~~~~a~~la~~L 275 (386)
T PRK06767 201 VVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRK-DIGGIMAPFDAWLL---LRGLK-TLAVRMDRHCDNAEKIVSFL 275 (386)
T ss_pred EEecCcceecCCCCceeEEEEeChHHHHHHHHHHHH-HhCCCCCHHHHHHH---HcCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 9999999996554 69999998877665322111 22333344433322 22222 44556788899999999999
Q ss_pred HhC-CcEEeeCC----------CCCeEEEEEccC
Q psy13354 300 DQR-GIRIVSGG----------TKSHIILVDLRN 322 (1342)
Q Consensus 300 ~~~-g~~~~~~~----------~~~~~v~i~~~~ 322 (1342)
.+. ++..+..| ..+.++.+.+++
T Consensus 276 ~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~ 309 (386)
T PRK06767 276 KNHDAVEGVWYPEGELASRQMKRGGGVISFSIKG 309 (386)
T ss_pred HcCCCccEEECCCcHHHHHhCCCCCceEEEEEcC
Confidence 985 56533311 124567777753
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=163.04 Aligned_cols=301 Identities=15% Similarity=0.146 Sum_probs=197.1
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCcc---CCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccCC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYY---GGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLNP 112 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~---~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~p 112 (1342)
.|.+|++++.+.+. .+. ..+...+ ...+...++.+.+++.++++++.+ .++++++|||.|+++++..++.+
T Consensus 3 ~p~~v~~~~~~~~~-~~~--~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~ 79 (349)
T TIGR01364 3 LPEEVLEQAQKELL-NFN--GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAE 79 (349)
T ss_pred CCHHHHHHHHHHHh-Ccc--CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCC
Confidence 56678999888775 222 1222222 223334477777999999999963 36667767999999999999999
Q ss_pred CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEE-cCCCCCccc-CHHHHHH
Q psy13354 113 GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIA-GASAYSQYI-DFERFYH 188 (1342)
Q Consensus 113 GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~-~~s~~~~~~-~l~~I~~ 188 (1342)
||++++......++- ........|. +..+..+.. ....+++++++. .+ ++++|.+ ++.+.++.. + +
T Consensus 80 ~~~~l~i~~G~fg~r-~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~th~ETstGv~~~-----~ 149 (349)
T TIGR01364 80 GKVADYIVTGAWSKK-AAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--SE-DAAYVHYCANETIHGVEFR-----E 149 (349)
T ss_pred CCeEEEEECCHHHHH-HHHHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--CC-CCCEEEEcCCCCcccEecc-----e
Confidence 999987553322221 2445566677 555543311 222356665552 22 4455444 333333333 3 6
Q ss_pred HHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc-----------C
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV-----------F 254 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~-----------~ 254 (1342)
+++.+++++++|+++++|.. +++ ..|++++|.+|+| ||+| |+++.+++..+.+.... .
T Consensus 150 l~~~~~~l~iVDavss~g~~-------~id~~~~d~~~~ssqK~l-gP~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~ 221 (349)
T TIGR01364 150 LPDVKNAPLVADMSSNILSR-------PIDVSKFGLIYAGAQKNI-GPAGLTVVIVRKDLLGRASRITPSMLNYKIHAEN 221 (349)
T ss_pred ecccCCCeEEEEccccccCc-------cCCHHHccEEEEeccccc-CCCceEEEEECHHHHhhcccCCCCcchHHHHHhc
Confidence 77778999999999998876 333 2579999999999 7999 99999998776553311 1
Q ss_pred CccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-C-CCC-eEEEEEccCCCCCHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQR-GIRIVSG-G-TKS-HIILVDLRNKKITGKI 329 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-~-~~~-~~v~i~~~~~~~~~~~ 329 (1342)
....++|+.+...++..++..+.++ +++.+.++..++++++++.|++. |+..... + ... .++.+.+++.....++
T Consensus 222 ~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~ 301 (349)
T TIGR01364 222 DSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEELEKRF 301 (349)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChhHhHHH
Confidence 2223678888888988888888777 69999999999999999999998 5644321 1 122 3455666644333333
Q ss_pred HHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.. .+.+.|+++.+... . .+.+|+|+..+++.
T Consensus 302 ~~-~~~~~Gi~~~~~~~----~----~g~vRvS~~~~nt~ 332 (349)
T TIGR01364 302 LK-EAEERGLVSLKGHR----S----VGGMRASIYNAMPL 332 (349)
T ss_pred HH-HHHHCCCcccCCcc----c----cCeeEEECcCCCCH
Confidence 34 44556995543321 1 24699999888774
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-13 Score=161.51 Aligned_cols=289 Identities=18% Similarity=0.185 Sum_probs=174.5
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCcc--CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY--GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN 111 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~--~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~ 111 (1342)
.+..++++.+++++.+.+. .|. .....+- ..+..+.. +++.+++++|++++++++ ||+.|+..++.+ +.
T Consensus 88 lg~s~l~~~vieAv~~~~~-~y~--~l~~~l~~g~~g~r~~~----le~~lA~l~gae~alvv~-sg~aAi~l~l~~-l~ 158 (454)
T TIGR00474 88 LGRAPLAEEAIEAVTDAAR-GYS--NLEYDLETGKRGSRYSH----VEGLLCELTGAEDALVVN-NNAAAVLLALNT-LA 158 (454)
T ss_pred CCCCCCCHHHHHHHHHHHh-ccc--chhccccccccchHHHH----HHHHHHHHhCCCcEEEEC-CHHHHHHHHHHH-hC
Confidence 3446778889999888775 332 1110000 01222333 555999999999888877 999999988855 68
Q ss_pred CCCEEEEeecc---CCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----cccCH
Q psy13354 112 PGDTIMGMSLQ---EGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-----QYIDF 183 (1342)
Q Consensus 112 pGD~Vlv~~~~---~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~~l 183 (1342)
+||+|+++... +++.+.....+...|+ +++.++.+. ..+++++++++++++..+++.+.+|+. ...|+
T Consensus 159 ~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~--~~~~v~~~~--~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl 234 (454)
T TIGR00474 159 KGKEVIVSRGELVEIGGSFRIPDVMEQSGA--KLVEVGTTN--RTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVSI 234 (454)
T ss_pred CcCEEEECCChhhhhcchhhHHHHHHHcCC--EEEEeCCCC--CCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCCH
Confidence 99999987655 3333344344556676 445445432 348999999998766666777777765 25699
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcC------CCC---CCCC-CCcEEEecCCccCCCCCeeEEEEechhHHHHhhcc
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAG------EYP---NPVP-FADFITSTTHKSLRGPRGGFILMKKKYKKIINSAV 253 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~------~~~---~~l~-~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~ 253 (1342)
++|+++|++||+++++|.+. |.+... ..+ .+.. .+|++++|.+||++||.+|++++++++++.++..
T Consensus 235 ~~I~~la~~~g~~vivD~~s--G~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~~~i~~l~~~- 311 (454)
T TIGR00474 235 AELVALGREHGLPVMEDLGS--GSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKKELIERLKKN- 311 (454)
T ss_pred HHHHHHHHHcCCeEEEECCC--cccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECHHHHHhhhhc-
Confidence 99999999999999999753 333110 111 1122 4799999999999888889999999888776532
Q ss_pred CCccccC-CcHHHHHHHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHHHHhC---Cc--EEeeCC------
Q psy13354 254 FPGIQGG-PLMHVIAAKAVAFKEVLKPD-----------FKIYQKQVVKNAKILSKILDQR---GI--RIVSGG------ 310 (1342)
Q Consensus 254 ~~~~~~~-~~~~~~~Aaa~al~~~l~~~-----------~~~~~~~l~~~a~~l~~~L~~~---g~--~~~~~~------ 310 (1342)
+..-.- ..-...+++...+..++... +....+++.+++..+.+.|++. ++ .+....
T Consensus 312 -~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg 390 (454)
T TIGR00474 312 -PLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGG 390 (454)
T ss_pred -hhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCC
Confidence 110000 00001122222333222211 1122356777888888888762 33 333311
Q ss_pred --CC--CeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 311 --TK--SHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 311 --~~--~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
+. -+-..+.+.....+...+...|++...
T Consensus 391 ~~p~~~l~~~~v~~~~~~~~~~~l~~~lr~~~~ 423 (454)
T TIGR00474 391 SLPDERLPSYAVTLTPDGLSAEKLEARLRELPP 423 (454)
T ss_pred CCcCCCCCeEEEEEecCCCCHHHHHHHHhcCCC
Confidence 01 122334443334456666677776553
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-14 Score=170.76 Aligned_cols=213 Identities=22% Similarity=0.258 Sum_probs=152.3
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++...++++ .++++.|.+.+++++ ||++|+..++.+++.+||+|+++...|++...... .+...|+ ++..+
T Consensus 62 ~~p~~~~le~----~lA~l~g~~~~i~~s-sG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi--~v~~v 134 (398)
T PRK08249 62 TNPTVQAFEE----KVRILEGAEAATAFS-TGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGV--DVTLC 134 (398)
T ss_pred CChHHHHHHH----HHHHHhCCCeEEEeC-ChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCe--EEEEc
Confidence 3555566666 999999998888887 99999999999999999999988877665433332 2445565 44433
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-CCCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-PFADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~~~Di 222 (1342)
+. .|++.+++++++ ++++|+++.+++| ...|+++|+++|+++|++||+|++|+.+... .++ ..+|+
T Consensus 135 d~-----~d~e~l~~~i~~-~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~-----~~l~~~~Di 203 (398)
T PRK08249 135 ET-----GDHEQIEAEIAK-GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQ-----NPLALGADL 203 (398)
T ss_pred CC-----CCHHHHHHhcCC-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccC-----CchhhCCCE
Confidence 43 489999999876 4567776666666 4559999999999999999999998754331 122 24799
Q ss_pred EEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
+++|+||+++|+. ||++++++++++.++.... ..+...++..+++.... +. .+..+.++..+++..+.+.|
T Consensus 204 vv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~--~~g~~~s~~~a~l~l~~---l~-tL~~R~~~~~~na~~la~~L 277 (398)
T PRK08249 204 VIHSATKFLSGHADALGGVVCGSKELMEQVYHYRE--INGATMDPMSAYLILRG---MK-TLKLRVRQQQESAMALAKYL 277 (398)
T ss_pred EeccCceecCCCCCceEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHHHHhC---cc-hHHHHHHHHHHHHHHHHHHH
Confidence 9999999995532 5888888888887765432 22334444444443332 22 44566788899999999999
Q ss_pred HhCC
Q psy13354 300 DQRG 303 (1342)
Q Consensus 300 ~~~g 303 (1342)
++..
T Consensus 278 ~~~p 281 (398)
T PRK08249 278 QTHP 281 (398)
T ss_pred HcCC
Confidence 8753
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-13 Score=162.06 Aligned_cols=240 Identities=19% Similarity=0.215 Sum_probs=159.8
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++...+|++ .++++.|.+.+++++ ||++|+..++ +++.+||+|+++...+++..... ..+...|+ ++..+
T Consensus 50 ~~pt~~~le~----~la~l~g~~~~~~~~-sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~--~v~~v 121 (366)
T PRK08247 50 GNPTRGVLEQ----AIADLEGGDQGFACS-SGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV--RFVYV 121 (366)
T ss_pred CCchHHHHHH----HHHHHhCCCcEEEEc-CHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCc--eEEEE
Confidence 3455566666 999999999887777 9999998776 57889999999887776654433 23455676 44444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.. |++.+++++++ ++++|+++.++|| ...++++|+++|++||+++|+|++|+.+... .+.. .+|+
T Consensus 122 d~~-----d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~-----~p~~~g~di 190 (366)
T PRK08247 122 NTA-----SLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQ-----RPLEEGADI 190 (366)
T ss_pred CCC-----CHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc-----CchhcCCcE
Confidence 543 89999998876 4577777666666 4458999999999999999999998654331 1222 4799
Q ss_pred EEecCCccCCCC---CeeEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGP---RGGFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp---~GG~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+++|++|+++|+ .||+++++ +++.+.+....... +...++..+.+... .+. .+....++..+++..+.+.
T Consensus 191 ~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~--g~~~s~~~a~l~~~---~l~-tl~~r~~~~~~~a~~l~~~ 264 (366)
T PRK08247 191 VIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAA--GAVLSPFDSWLLIR---GMK-TLALRMRQHEENAKAIAAF 264 (366)
T ss_pred EEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhc--CCCCChHHHHHHHh---ccC-cHHHHHHHHHHHHHHHHHH
Confidence 999999999654 35998886 56666665432211 11223322222211 222 4455667789999999999
Q ss_pred HHhC-CcEEeeCC-CCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 299 LDQR-GIRIVSGG-TKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 299 L~~~-g~~~~~~~-~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
|++. ++..+..| .++.+. +.+.. .+...++++.
T Consensus 265 L~~~p~v~~v~~P~~gg~~s-f~~~~----~~~~~~~~~~ 299 (366)
T PRK08247 265 LNEQPGVTDVLYPGRGGMLS-FRLQD----EEWVNPFLKS 299 (366)
T ss_pred HHhCCCeeEEecCCcCcEEE-EEECC----HHHHHHHHHc
Confidence 9985 55533333 444444 45542 3555566654
|
|
| >KOG1969|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.8e-14 Score=165.35 Aligned_cols=213 Identities=19% Similarity=0.288 Sum_probs=171.0
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcC--------------------------------C-CCcEEEEEccCcccH
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKK--------------------------------R-LHHAYLFTGTRGVGK 426 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~--------------------------------~-~~~~~Ll~G~~G~GK 426 (1342)
-|..||+|+.|.||.|-+.+=+.+..+|+.- + ....+||+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 5899999999999999888777776666421 1 114799999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcC-c---cCCceE
Q psy13354 427 TTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAP-I---NARYKI 502 (1342)
Q Consensus 427 T~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p-~---~~~~rv 502 (1342)
||+|+.+|+..+. -++++|+++.+....+.+.++.+.... + .+++.+
T Consensus 340 TTLAHViAkqaGY-----------------------------sVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~C 390 (877)
T KOG1969|consen 340 TTLAHVIAKQAGY-----------------------------SVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVC 390 (877)
T ss_pred hHHHHHHHHhcCc-----------------------------eEEEecccccccHHHHHHHHHHHHhhccccccCCCcce
Confidence 9999999999873 489999999888888888887765543 3 367889
Q ss_pred EEeccCccCCHHHHHHHHHhhcC--C-----CC--------------cEEEEEEeCCCC-CChHHHhccEEEEEEcCCCH
Q psy13354 503 YVIDEVHMLTHHAFNAMLKTLEE--P-----PK--------------YIKFILATTEPQ-KIPITVLSRCIQFNLKKMLH 560 (1342)
Q Consensus 503 viIDE~~~L~~~~~~~Ll~~Le~--p-----~~--------------~~vlIl~t~~~~-kl~~~L~sR~~~i~~~~l~~ 560 (1342)
+||||+|.-...+.+.++..++. + +. .--+|++||+.- --+..|+.-+.++.|.+++.
T Consensus 391 LViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~ 470 (877)
T KOG1969|consen 391 LVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQ 470 (877)
T ss_pred EEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCCh
Confidence 99999998888888999988862 1 11 113678888643 22346667789999999999
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC---CCHHHHHHHh
Q psy13354 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEK---ITLNSMQEML 621 (1342)
Q Consensus 561 ~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~---It~e~V~~~v 621 (1342)
.-+.+.|+.+|.++|+.++..++..|++.+.+|+|..+|-|+-+....... ++..++.+..
T Consensus 471 s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~ 534 (877)
T KOG1969|consen 471 SRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAKN 534 (877)
T ss_pred hHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhhh
Confidence 999999999999999999999999999999999999999998776655433 6666666554
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-14 Score=157.96 Aligned_cols=209 Identities=15% Similarity=0.199 Sum_probs=146.2
Q ss_pred HHHhhccCC-CCccccc-c-chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 379 VVLARKYRP-SNFNTLI-G-QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 379 ~~l~~k~~p-~~f~~lv-G-q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
++|.-.+.| .+|++.+ | +..++..+.+....... +.++||||+|+|||++++++++.+...+
T Consensus 9 l~l~~~~~~~~~fd~f~~~~n~~a~~~l~~~~~~~~~-~~l~l~Gp~G~GKThLl~a~~~~~~~~~-------------- 73 (235)
T PRK08084 9 LSLPLYLPDDETFASFYPGDNDSLLAALQNALRQEHS-GYIYLWSREGAGRSHLLHAACAELSQRG-------------- 73 (235)
T ss_pred eecCCCCCCcCCccccccCccHHHHHHHHHHHhCCCC-CeEEEECCCCCCHHHHHHHHHHHHHhCC--------------
Confidence 344433333 3688865 4 56677777777665543 4689999999999999999999876311
Q ss_pred CcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--HHHHHHHHhhcCC--CCcEE
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--HAFNAMLKTLEEP--PKYIK 531 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p--~~~~v 531 (1342)
....++.++... ....++++... ...+++|||++.+.. +....|...+... .....
T Consensus 74 ----------~~v~y~~~~~~~----~~~~~~~~~~~------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~ 133 (235)
T PRK08084 74 ----------RAVGYVPLDKRA----WFVPEVLEGME------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTR 133 (235)
T ss_pred ----------CeEEEEEHHHHh----hhhHHHHHHhh------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCe
Confidence 111233332211 11122222221 235899999998853 3334444444321 12345
Q ss_pred EEEEeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHH
Q psy13354 532 FILATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQA 604 (1342)
Q Consensus 532 lIl~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl 604 (1342)
+|++++.+. .+.+.|+||+ .++++.+|+.+++.+++++++..+|+.++++++++|+++++||+|.+.+.++++
T Consensus 134 li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 134 LLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred EEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 777777653 3568999999 899999999999999999999999999999999999999999999999999997
Q ss_pred Hhh--c-CCCCCHHHHHHHhc
Q psy13354 605 INY--S-SEKITLNSMQEMLS 622 (1342)
Q Consensus 605 ~~~--~-~~~It~e~V~~~v~ 622 (1342)
... . +.+||.+.+++++.
T Consensus 214 ~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 214 DRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHhcCCCCCHHHHHHHHc
Confidence 533 2 46699999998764
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.3e-13 Score=161.54 Aligned_cols=288 Identities=16% Similarity=0.128 Sum_probs=175.9
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccC--CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYG--GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN 111 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~--~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~ 111 (1342)
.+..++++++++++.+.+. .|. +....... .+..+.. +++.+++++|++++++++ ||+.|+..++.+ +.
T Consensus 93 lg~s~l~~~v~eav~~~~~-~~~--~le~~l~~g~~g~r~~~----~e~~lA~l~Gae~a~vv~-sgtaAl~l~l~~-l~ 163 (464)
T PRK04311 93 LGRALLSEAAIEAVTEAAR-GYS--NLEYDLATGKRGSRDRA----LAALLCALTGAEDALVVN-NNAAAVLLALNA-LA 163 (464)
T ss_pred CCCCCCCHHHHHHHHHHHh-ccc--ccccchhhcccchHHHH----HHHHHHHHhCCCeEEEEC-CHHHHHHHHHHH-hC
Confidence 4457788889999888774 332 11100100 1222333 555999999999888777 899999988866 58
Q ss_pred CCCEEEEeeccC---CccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----cccCH
Q psy13354 112 PGDTIMGMSLQE---GGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-----QYIDF 183 (1342)
Q Consensus 112 pGD~Vlv~~~~~---~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~~l 183 (1342)
+||+|+++..++ ++.+.....+...|+ +++.++.+ ...+++++++++++++..+++.+.+|+. ...|+
T Consensus 164 ~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~--~l~~v~~~--~~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl 239 (464)
T PRK04311 164 AGKEVIVSRGELVEIGGAFRIPDVMRQAGA--RLVEVGTT--NRTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVSL 239 (464)
T ss_pred CCCEEEEcchhhhhcCcchhhHHHHHHCCc--EEEEECCC--CCCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCCH
Confidence 999999876533 222333334455676 44544543 2347999999998776666777777753 35699
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhc------CCCC---CCC-CCCcEEEecCCccCCCCCeeEEEEechhHHHHhhcc
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAA------GEYP---NPV-PFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAV 253 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~------~~~~---~~l-~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~ 253 (1342)
++|+++|++||+++++|.+++ .+.. ...+ .++ ..+|++++|.+|+++||.+|++++++++++.++...
T Consensus 240 ~eI~~lak~~gi~vivD~gsG--~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~~li~~l~~~~ 317 (464)
T PRK04311 240 AELAALGKEHGLPVVYDLGSG--SLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKKELIARLKKHP 317 (464)
T ss_pred HHHHHHHHHcCCeEEEECCCc--ccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcHHHHHHHhhch
Confidence 999999999999999999643 2211 0111 112 247999999999998888899999999888776311
Q ss_pred --CCccccCCcHHHHHHHHHHHHHhccc--------h---HHHHHHHHHHHHHHHHHHHHhCC---c--EEeeC------
Q psy13354 254 --FPGIQGGPLMHVIAAKAVAFKEVLKP--------D---FKIYQKQVVKNAKILSKILDQRG---I--RIVSG------ 309 (1342)
Q Consensus 254 --~~~~~~~~~~~~~~Aaa~al~~~l~~--------~---~~~~~~~l~~~a~~l~~~L~~~g---~--~~~~~------ 309 (1342)
....... ...+++...+..++.. . +....+++.+++..+.+.|.... + .+...
T Consensus 318 ~~r~lr~dk---~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gg 394 (464)
T PRK04311 318 LKRALRVDK---LTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGG 394 (464)
T ss_pred hHHHHhcch---HHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCC
Confidence 0110111 1222333333322210 0 12223677888999999998742 2 33321
Q ss_pred ----CCCCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 310 ----GTKSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 310 ----~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
...-+-..+.+.....+...+...|++...
T Consensus 395 gs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~ 428 (464)
T PRK04311 395 GSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPP 428 (464)
T ss_pred CCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCC
Confidence 011122334444434556667777776443
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-14 Score=164.91 Aligned_cols=266 Identities=19% Similarity=0.220 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCC----
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK---- 150 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~---- 150 (1342)
..++.+.+++.||++++.+.++|+|.+|.++++++++|||.|+ +..++|.|....+...|....++.-. ++.
T Consensus 68 I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VL---v~RN~HkSv~~alil~ga~Pvyi~p~-~~~~gi~ 143 (417)
T PF01276_consen 68 IKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVL---VDRNCHKSVYNALILSGAIPVYIPPE-DNEYGII 143 (417)
T ss_dssp HHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEE---EETT--HHHHHHHHHHTEEEEEEEEE-E-TTS-B
T ss_pred HHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEE---EcCCcHHHHHHHHHHcCCeEEEecCC-ccccCCc
Confidence 3445669999999999999885666699999999999999999 55588899888888888744444322 221
Q ss_pred CCCCH-----HHHHHHHHhcCC--e--EEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-C
Q psy13354 151 EKIDY-----KKVEYLAKKNKP--K--LIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-F 219 (1342)
Q Consensus 151 ~~id~-----e~Le~~i~~~~~--~--liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~ 219 (1342)
+.+++ +.++++++++.. . +++++.|+|- ...++++|+++|++++++|+|||||+.-........+... .
T Consensus 144 ~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~g 223 (417)
T PF01276_consen 144 GGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALG 223 (417)
T ss_dssp EEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTT
T ss_pred cCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhhcc
Confidence 23556 999999986532 2 3444455554 5559999999999999999999999754332222222232 3
Q ss_pred Cc-------EEEecCCccCCCCCe-eEEEEechh---HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHH
Q psy13354 220 AD-------FITSTTHKSLRGPRG-GFILMKKKY---KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288 (1342)
Q Consensus 220 ~D-------ivv~S~sK~l~gp~G-G~iv~~~~l---~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l 288 (1342)
+| +++.|.||++++... +++..+.+. .+.++.....+..++|..+.++.+-.+...+.....++..++.
T Consensus 224 ad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~ 303 (417)
T PF01276_consen 224 ADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEA 303 (417)
T ss_dssp SS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 68 999999999988777 777777652 3555554334445566677777776665555234666778888
Q ss_pred HHHHHHHHHHHHh----CCcEEeeC----CCC-------------------C-----eEEEEEc---------cCCCCCH
Q psy13354 289 VKNAKILSKILDQ----RGIRIVSG----GTK-------------------S-----HIILVDL---------RNKKITG 327 (1342)
Q Consensus 289 ~~~a~~l~~~L~~----~g~~~~~~----~~~-------------------~-----~~v~i~~---------~~~~~~~ 327 (1342)
.+++..+++.+.+ .+|.+..+ ... . --+.+.+ .+.+.+.
T Consensus 304 i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g 383 (417)
T PF01276_consen 304 IELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYMLDPTKLTINTPGIDADGELSELGIPG 383 (417)
T ss_dssp HHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE-TTEEEEE-STBETTSSB-SS---H
T ss_pred HHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccccchhchhcccCccccCCcEEEEEccCcCcCCcccccCCCH
Confidence 8999999999843 24554331 111 0 1234444 3456677
Q ss_pred HHHHHHHHHCCceeeec
Q psy13354 328 KIAESILESANIICNKN 344 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~ 344 (1342)
..+.++|+++||.+-..
T Consensus 384 ~~~~~~L~~~~I~~Ek~ 400 (417)
T PF01276_consen 384 YIVEKYLREHGIQVEKT 400 (417)
T ss_dssp HHHHHHHHHTTEE-SEE
T ss_pred HHHHHHHHHcCCEEEec
Confidence 78888888889988643
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-13 Score=162.42 Aligned_cols=247 Identities=19% Similarity=0.242 Sum_probs=164.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++...++++ .+++++|.+++++++ ||++|+..++.+++++||+|+++...+++..... ..+...|. +++.++
T Consensus 60 ~p~~~~le~----~la~l~g~~~~v~~s-sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~--~v~~vd 132 (390)
T PRK08133 60 NPTVTMFQE----RLAALEGAEACVATA-SGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGI--ETTFVD 132 (390)
T ss_pred ChHHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCc--EEEEEC
Confidence 444445555 899999998877776 9999999999999999999998877776654433 23455676 455555
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++++++++++ ++++|++..+++| ...++++|+++|+++|++||+|++++.+... .++. .+|++
T Consensus 133 ~~-----d~~~l~~~i~~-~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~-----~pl~~g~Div 201 (390)
T PRK08133 133 LT-----DLDAWRAAVRP-NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQ-----QPLKLGADVV 201 (390)
T ss_pred CC-----CHHHHHHhcCc-CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccC-----CchhhCCcEE
Confidence 54 78999998876 4566666555555 4559999999999999999999998655431 1222 36999
Q ss_pred EecCCccCCCC---CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGP---RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 224 v~S~sK~l~gp---~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
++|+||+++++ .||++++++++++.+...... .+....+..+.+ + ...++ .+..+.++..+++..+.+.|+
T Consensus 202 v~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~--~g~~~~~~~a~~--~-l~gl~-tl~~R~~~~~~~a~~la~~L~ 275 (390)
T PRK08133 202 IHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRT--AGPTLSPFNAWV--F-LKGLE-TLSLRMEAHSANALALAEWLE 275 (390)
T ss_pred EeecceeecCCcceEeEEEEcCHHHHHHHHHHHHH--hCCCCCHHHHHH--H-Hcccc-hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999442 348888888776655432221 122223332222 2 22222 566677888899999999999
Q ss_pred hC-CcEEee-CC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 301 QR-GIRIVS-GG---------------TKSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 301 ~~-g~~~~~-~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
+. ++..+. +. ..+.++.+.+.+ +.+.+.++++.-.+..
T Consensus 276 ~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~---~~~~~~~f~~~l~l~~ 330 (390)
T PRK08133 276 AHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG---GREAAWRVIDATRLIS 330 (390)
T ss_pred hCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC---CHHHHHHHHHhCCcce
Confidence 85 443222 11 123466677653 3455667777655543
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-13 Score=163.97 Aligned_cols=246 Identities=18% Similarity=0.199 Sum_probs=163.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~ 146 (1342)
.+...++++ .+++++|.+.+++++ ||+.|+..++.+++++||+|+++...+++...... .....|+ .+..++
T Consensus 60 ~p~~~~Le~----~lA~~~g~~~~i~~~-sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi--~~~~~d 132 (388)
T PRK07811 60 NPTRTALEE----QLAALEGGAYGRAFS-SGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGV--EYTPVD 132 (388)
T ss_pred CccHHHHHH----HHHHHhCCCceEEeC-CHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCe--EEEEeC
Confidence 455556666 999999999888887 99999999999999999999988777664433222 2233354 444444
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
. .|++++++.+++ ++++|+++.+++| ...++++|+++|+++|++||+|++|+.+... .++. .+|++
T Consensus 133 ~-----~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~-----~p~~~gaDiv 201 (388)
T PRK07811 133 L-----SDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQ-----QPLALGADVV 201 (388)
T ss_pred C-----CCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccC-----CchhhCCcEE
Confidence 3 389999998876 4667777666666 5569999999999999999999998765431 1222 47999
Q ss_pred EecCCccCCCCC---eeEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|++|+++|+. ||+++++ +++.+.++.... ..+....+..+++ ++. .+. .+..+.++..+|+..+.+.|
T Consensus 202 v~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~--~~g~~~s~~~a~l--~~~-~L~-tl~~R~~~~~~na~~la~~L 275 (388)
T PRK07811 202 VHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQN--GAGAVPGPFDAYL--TLR-GLK-TLAVRMDRHSENAEAVAEFL 275 (388)
T ss_pred EecCceeecCCCCcEEEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHH--HHh-ccC-cHHHHHHHHHHHHHHHHHHH
Confidence 999999996654 5888876 456555543221 1122223333322 222 222 45567788899999999999
Q ss_pred HhC-CcEEee-CCC---------------CCeEEEEEccCCCCCHHHHHHHHHHCCce
Q psy13354 300 DQR-GIRIVS-GGT---------------KSHIILVDLRNKKITGKIAESILESANII 340 (1342)
Q Consensus 300 ~~~-g~~~~~-~~~---------------~~~~v~i~~~~~~~~~~~~~~ll~~~GI~ 340 (1342)
++. ++..+. ++- .+.++.+.+++ +.+.+.++++.-.+.
T Consensus 276 ~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~---~~~~~~~f~~~l~~~ 330 (388)
T PRK07811 276 AGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG---GEEAARDFCARTKVF 330 (388)
T ss_pred HhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCC---CHHHHHHHHHhCCcc
Confidence 885 333222 111 13366777753 234566777664543
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-13 Score=161.59 Aligned_cols=246 Identities=15% Similarity=0.176 Sum_probs=161.6
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~ 146 (1342)
++....|++ +++++.|.+.+++++ ||++|+..++.++++|||+|+++...|++....... ....+. .+..++
T Consensus 51 ~pt~~~L~~----~lA~l~g~~~~i~~~-sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi--~v~~vd 123 (386)
T PRK08045 51 NPTRDVVQR----ALAELEGGAGAVLTN-TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFVD 123 (386)
T ss_pred CccHHHHHH----HHHHHhCCCeEEEEC-CHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe--EEEEeC
Confidence 444455555 899999977666655 999999999999999999999888777654433322 223333 333333
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
..|++.+++.+++ ++++|+++.++|| ...|+++|.++|+++|++||+|++|..+.. ..++. .+|++
T Consensus 124 -----~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~-----~~pl~~gaDiv 192 (386)
T PRK08045 124 -----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPAL-----QNPLALGADLV 192 (386)
T ss_pred -----CCCHHHHHHhccc-CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcccc-----CCchhhCCCEE
Confidence 2489999998876 5677777777766 455999999999999999999999876533 12333 47999
Q ss_pred EecCCccCCCCCe---eEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|++|+++|+.+ |++++ ++++.+.+....... +...++..+.+. ...+. .+..++++..+++..+.+.|
T Consensus 193 v~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~--g~~~~p~~~~l~---~rgl~-tl~~R~~~~~~na~~la~~L 266 (386)
T PRK08045 193 LHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI--GVTGGAFDSYLL---LRGLR-TLVPRMELAQRNAQAIVKYL 266 (386)
T ss_pred EeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhc--CCCCCHHHHHHH---Hhhhc-cHHHHHHHHHHHHHHHHHHH
Confidence 9999999977664 88776 456666665322221 222233333222 22222 46677899999999999999
Q ss_pred HhCC-cE-EeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCce
Q psy13354 300 DQRG-IR-IVSGG---------------TKSHIILVDLRNKKITGKIAESILESANII 340 (1342)
Q Consensus 300 ~~~g-~~-~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~ 340 (1342)
+..+ +. +..++ ..+.++.+.+++ +.+.+.++++.-.+.
T Consensus 267 ~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~---~~~~~~~f~~~l~~~ 321 (386)
T PRK08045 267 QTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG---DEQTLRRFLGGLSLF 321 (386)
T ss_pred HcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC---cHHHHHHHHHhccce
Confidence 9864 32 22211 112356676653 245556666664544
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-13 Score=167.99 Aligned_cols=281 Identities=15% Similarity=0.149 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEecCCC
Q psy13354 73 LIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLNK 149 (1342)
Q Consensus 73 ~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~~ 149 (1342)
+...+..+++++++|.+ ..+++++||++++..++.++ ..+||+|+++...|+.+...+.. ....|. +++.++.++
T Consensus 112 ~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~--~~~~v~~~~ 189 (447)
T PRK00451 112 QAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGI--EVVEVPYED 189 (447)
T ss_pred HHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCc--EEEEecCCC
Confidence 34444556889999987 34445658888998888887 47999999877666655443332 223466 555556666
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEE--EcccchhhhhcCCCCCCCCCCcEEEec
Q psy13354 150 KEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMV--DMAHYAGLIAAGEYPNPVPFADFITST 226 (1342)
Q Consensus 150 ~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIv--Dea~~~g~~~~~~~~~~l~~~Divv~S 226 (1342)
+ .+|++++++.++++ +++++++.++++ ...|+++|+++|+++|+++++ |.+ +.|... .+. .-.+|++++|
T Consensus 190 ~-~~d~~~l~~~i~~~-t~~v~l~~pn~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~---~~~-~~~~D~~~~s 262 (447)
T PRK00451 190 G-VTDLEALEAAVDDD-TAAVVVQYPNFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLK---PPG-EYGADIVVGE 262 (447)
T ss_pred C-CCCHHHHHHhcCCC-eEEEEEECCCCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCC---Ccc-cCCCCEEEEC
Confidence 6 89999999998764 455555555544 555999999999999999998 543 333221 011 1147999997
Q ss_pred CCcc-----CCCCCeeEEEEechhHHHHhhcc-----------------------CCcccc----CCcHHHH-HHHHHHH
Q psy13354 227 THKS-----LRGPRGGFILMKKKYKKIINSAV-----------------------FPGIQG----GPLMHVI-AAKAVAF 273 (1342)
Q Consensus 227 ~sK~-----l~gp~GG~iv~~~~l~~~l~~~~-----------------------~~~~~~----~~~~~~~-~Aaa~al 273 (1342)
.+|| ++||..||+++++++++.+.... .....+ +.....+ .+++.++
T Consensus 263 ~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l 342 (447)
T PRK00451 263 GQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYM 342 (447)
T ss_pred CCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHH
Confidence 7775 54564499999988877642100 000001 1111122 2223233
Q ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCC
Q psy13354 274 KEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEK 352 (1342)
Q Consensus 274 ~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~ 352 (1342)
.....+++++..+++.++++++.+.|.+. |+++. .+....++.++++ ..+.++.++++++ ||.+.....+..+.
T Consensus 343 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~v~~~--~~~~~~~~~L~~~-gi~~~~~~~~~~~~- 417 (447)
T PRK00451 343 SLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELF-DGPFFNEFVVRLP--KPAEEVNEALLEK-GILGGYDLGRYYPE- 417 (447)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec-CCCeEEEEEEecC--CCHHHHHHHHHhc-CCCCCcccccccCC-
Confidence 33445578889999999999999999987 57764 2211122334443 2245677777665 77643211111111
Q ss_pred ccccccccccccccccc
Q psy13354 353 PYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 353 ~~~~~~lRi~~~~~~t~ 369 (1342)
..+.+|++++..+|.
T Consensus 418 --~~~~~rvs~~~~~t~ 432 (447)
T PRK00451 418 --LGNHLLVCVTEKRTK 432 (447)
T ss_pred --cCCEEEEecCCCCCH
Confidence 134699999887664
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.5e-14 Score=166.82 Aligned_cols=213 Identities=19% Similarity=0.201 Sum_probs=151.2
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~ 145 (1342)
+++....|++ .++++.|.+.+++++ ||++|+..++.+++++||+|+++...+++.+..... ....|. ++..+
T Consensus 51 ~npt~~~Le~----~lA~leg~e~ivvt~-gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi--~v~~v 123 (388)
T PRK08861 51 GNPNRGLLEQ----TLSELESGKGAVVTN-CGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDF--KVQFV 123 (388)
T ss_pred CCchHHHHHH----HHHHHhCCCeEEEEC-CHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCe--EEEEE
Confidence 3555666666 899999987777776 999999999999999999999877666654333322 223344 55544
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+. .|++++++++++ ++++|+++.++|| ...|+++|+++|+++|+++|+|++|..+.+. .+++ .+|+
T Consensus 124 d~-----~d~e~l~~~i~~-~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~-----~pl~~GaDi 192 (388)
T PRK08861 124 DQ-----SDAAALDAALAK-KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQ-----KPLELGADF 192 (388)
T ss_pred CC-----CCHHHHHHhcCc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccC-----CCcccCCCE
Confidence 42 388999988876 5677777666666 5559999999999999999999999876542 2333 4899
Q ss_pred EEecCCccCCCCC---eeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+++|+||+++|+. ||++++++ ++.+.++.... ..|...+|..+.+ . ..-+. -+.-+.++..+++..+.+.
T Consensus 193 vv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~--~~G~~~~p~~a~l--~-~rgl~-Tl~lR~~~~~~~a~~~a~~ 266 (388)
T PRK08861 193 VIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGN--CIGATGTPFDSYM--T-LRGIR-TLGARMRVHEESAQQILAY 266 (388)
T ss_pred EEeecceeccCCCcceeEEEEecHHHHHHHHHHHHh--ccCCCCChHHHHH--H-HhcCC-CHHHHHHHHHHHHHHHHHH
Confidence 9999999997765 58888754 56665553222 2234434444332 2 22232 5666788999999999999
Q ss_pred HHhCC
Q psy13354 299 LDQRG 303 (1342)
Q Consensus 299 L~~~g 303 (1342)
|+...
T Consensus 267 L~~~p 271 (388)
T PRK08861 267 LQTQS 271 (388)
T ss_pred HHhCC
Confidence 99864
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=167.30 Aligned_cols=317 Identities=15% Similarity=0.112 Sum_probs=183.3
Q ss_pred cCceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHH
Q psy13354 27 NNNIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~ 100 (1342)
++.|.+.++. .. .+|.+.+++.+.+.. .. .++. . ++.. ++..++++.+++++|.+ +.+++++||++
T Consensus 36 ~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~-~~~~-~-~~~~----~~~~~l~~~l~~~~~~~~~~v~~~~sgse 107 (413)
T cd00610 36 NRYLDFLSGIGVLNLGHNHPEVVEALKEQLAK-LT-HFSL-G-FFYN----EPAVELAELLLALTPEGLDKVFFVNSGTE 107 (413)
T ss_pred CEEEEcCccHHhhccCCCCHHHHHHHHHHHHh-Cc-CccC-c-ccCC----HHHHHHHHHHHHhCCCCCCEEEEcCcHHH
Confidence 3456665542 22 447799998888842 11 1110 0 0112 44555666999999832 44555559999
Q ss_pred HHHHHHHHc--cCCCCEEEEeeccCCccchhhHHhhhC----C----ceeEEEEecCCC------CCCCCHHHHHHHHHh
Q psy13354 101 ANQAVFFSV--LNPGDTIMGMSLQEGGHLTHGMMLNMS----G----KWFNSICYGLNK------KEKIDYKKVEYLAKK 164 (1342)
Q Consensus 101 A~~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~~~~~----g----~~~~~v~~~~~~------~~~id~e~Le~~i~~ 164 (1342)
|+..++..+ ..+++.|++.+..+.++.......... + ....++.++.++ ++..|++.+++.+++
T Consensus 108 a~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 187 (413)
T cd00610 108 AVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEE 187 (413)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhc
Confidence 999999987 367899998776655543322211110 0 011233444442 234488999998876
Q ss_pred c--CCeEEEEcCCCCC-c-ccC----HHHHHHHHHHcCCEEEEEcccchh-hhhcCCCCCCCC-CCcEEEecCCccCCCC
Q psy13354 165 N--KPKLIIAGASAYS-Q-YID----FERFYHIAKNINSYFMVDMAHYAG-LIAAGEYPNPVP-FADFITSTTHKSLRGP 234 (1342)
Q Consensus 165 ~--~~~liv~~~s~~~-~-~~~----l~~I~~la~~~gi~LIvDea~~~g-~~~~~~~~~~l~-~~Divv~S~sK~l~gp 234 (1342)
. +++++++.+.+++ + ..+ +++|.++|++||+++|+||+|+.. ..+......... .+|++ |+||+++++
T Consensus 188 ~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~--t~sK~l~~g 265 (413)
T cd00610 188 HPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIV--TLGKGLGGG 265 (413)
T ss_pred CCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeE--EEcccccCc
Confidence 3 4566666553333 2 234 999999999999999999998732 111110111111 24654 667999543
Q ss_pred Ce-eEEEEechhHHHH--hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCc--EEee-
Q psy13354 235 RG-GFILMKKKYKKII--NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI--RIVS- 308 (1342)
Q Consensus 235 ~G-G~iv~~~~l~~~l--~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~--~~~~- 308 (1342)
.. |++++++++++.+ ......+.++. ++...+++.+..+.+.. .+..+++.++.+++.+.|++... ....
T Consensus 266 ~~~g~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~~~a~~a~l~~l~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 341 (413)
T cd00610 266 LPLGAVLGREEIMDAFPAGPGLHGGTFGG--NPLACAAALAVLEVLEE--EGLLENAAELGEYLRERLRELAEKHPLVGD 341 (413)
T ss_pred cccEEEEEcHHHHHhhccCCCCCCCCCCc--CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhhCCcEEE
Confidence 22 8899999888886 22112222222 33333344444444332 34567888888889888877522 2111
Q ss_pred CCCCCeEEEEEccCC--------CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 309 GGTKSHIILVDLRNK--------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 309 ~~~~~~~v~i~~~~~--------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
....+.++++.+... .....+...++ ++||.+.+.. ...+|++++..++
T Consensus 342 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~v~~~~----------~~~lR~~~~~~~t 398 (413)
T cd00610 342 VRGRGLMIGIELVKDRATKPPDKELAAKIIKAAL-ERGLLLRPSG----------GNVIRLLPPLIIT 398 (413)
T ss_pred eecCceEEEEEEecCCCcCCcchHHHHHHHHHHH-HCCeEEeecC----------CCEEEEECCCcCC
Confidence 123457788877653 12334555555 5599998652 2358998877655
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.3e-13 Score=157.59 Aligned_cols=232 Identities=14% Similarity=0.143 Sum_probs=160.9
Q ss_pred chHHHHHHHHHHHHHHHhCCC---CceEecCCHH-HHHHHHHHHcc--C-CCCEEEEeeccCCccchhhHHhhhCCceeE
Q psy13354 69 KFIDLIEKIAINRLKKIFNAE---AANVQPHSGS-QANQAVFFSVL--N-PGDTIMGMSLQEGGHLTHGMMLNMSGKWFN 141 (1342)
Q Consensus 69 ~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs-~A~~~al~al~--~-pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~ 141 (1342)
...-.+.+.+.+.+++++|.+ .+++++ +|| .++.+++.++- . +||+|+++.. .|.+...++...|....
T Consensus 101 s~~~~l~~~~e~~~~~~~G~~~~~~a~~v~-~~Tg~al~laL~alr~~~~~gd~VI~p~~---th~S~~kAi~~~G~~pv 176 (444)
T TIGR03531 101 SLLYKLTNKLVKDFLKLLGLRSIKSAFVVP-LATGMSLSLCLSALRHKRPKAKYVIWPRI---DQKSCIKAISTAGFEPR 176 (444)
T ss_pred cHHHHHHHHHHHHHHHHcCCCCCCEEEEEC-CHHHHHHHHHHHHcCCcCCCCCEEEEECc---ChHHHHHHHHHcCCeEE
Confidence 335677788888999999998 566666 888 58888888774 2 6899997663 46777888888898655
Q ss_pred EEEecC-CCCCCCCHHHHHHHHHhcC---CeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC-
Q psy13354 142 SICYGL-NKKEKIDYKKVEYLAKKNK---PKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP- 214 (1342)
Q Consensus 142 ~v~~~~-~~~~~id~e~Le~~i~~~~---~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~- 214 (1342)
+++... ++++.+|++++++++++.+ +.+++.+++.++ ...|+++|+++|++||+|+|+|+||+.+........
T Consensus 177 ~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~ 256 (444)
T TIGR03531 177 VIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELIN 256 (444)
T ss_pred EeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhh
Confidence 554312 4678999999999998643 233333344343 467999999999999999999999986443211111
Q ss_pred CCC--CCCcEEEecCCccCCCCCe-eEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHH
Q psy13354 215 NPV--PFADFITSTTHKSLRGPRG-GFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVK 290 (1342)
Q Consensus 215 ~~l--~~~Divv~S~sK~l~gp~G-G~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~ 290 (1342)
... ..+|++++|+||++..|.+ |++++ ++++.+.+... .++.. ...+.+. ++..++....++++++.++..+
T Consensus 257 ~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~-y~g~~--~~s~~~~-~~~~ll~~G~~g~~~li~~~~~ 332 (444)
T TIGR03531 257 KAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKS-YPGRA--SASPSLD-VLITLLSLGSKGYLELLKERKE 332 (444)
T ss_pred ccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHh-ccCCC--CChHHHH-HHHHHHHhCHHHHHHHHHHHHH
Confidence 111 2369999999999966554 66657 55777777653 22222 2233333 3445556666688999999999
Q ss_pred HHHHHHHHHHhC----CcEEee
Q psy13354 291 NAKILSKILDQR----GIRIVS 308 (1342)
Q Consensus 291 ~a~~l~~~L~~~----g~~~~~ 308 (1342)
+++++.+.|.+. |..+..
T Consensus 333 ~a~~l~~~L~~l~~~~~~~~~~ 354 (444)
T TIGR03531 333 MYKYLKELLQKLAERHGERLLD 354 (444)
T ss_pred HHHHHHHHHHHHHHhhCcEeec
Confidence 999999998773 555543
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.1e-14 Score=155.55 Aligned_cols=200 Identities=17% Similarity=0.257 Sum_probs=150.1
Q ss_pred CCCCcccccc--chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 386 RPSNFNTLIG--QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 386 ~p~~f~~lvG--q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
+|.+|+++++ .+.++..+.++.........++|+||+|+|||++++++++.+...+
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~---------------------- 70 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG---------------------- 70 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC----------------------
Confidence 4668999773 4667777777776544456799999999999999999999874211
Q ss_pred cCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC--CcEEEEEEeCCCC-
Q psy13354 464 NGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP--KYIKFILATTEPQ- 540 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~--~~~vlIl~t~~~~- 540 (1342)
..+..+++.... +.. .+.....+++|||++.++...+..|+.+++... ...++|++++.+.
T Consensus 71 ----~~~~~i~~~~~~------~~~------~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~ 134 (227)
T PRK08903 71 ----RNARYLDAASPL------LAF------DFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPL 134 (227)
T ss_pred ----CcEEEEehHHhH------HHH------hhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 123444443211 111 223345799999999998878888888886422 2334566665433
Q ss_pred --CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc---CCCC
Q psy13354 541 --KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS---SEKI 612 (1342)
Q Consensus 541 --kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~---~~~I 612 (1342)
.+.+.+.||+ ..++++++++++....+.+.+.+.|+.++++++++|++.+.||++.+.+.++++..++ +..|
T Consensus 135 ~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i 214 (227)
T PRK08903 135 ALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPV 214 (227)
T ss_pred hCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 3456788785 7999999999999999999999999999999999999999999999999999877665 4569
Q ss_pred CHHHHHHHhcc
Q psy13354 613 TLNSMQEMLSI 623 (1342)
Q Consensus 613 t~e~V~~~v~~ 623 (1342)
|...|+++++.
T Consensus 215 ~~~~~~~~l~~ 225 (227)
T PRK08903 215 TLPLLREMLAQ 225 (227)
T ss_pred CHHHHHHHHhc
Confidence 99999998863
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=164.26 Aligned_cols=248 Identities=19% Similarity=0.247 Sum_probs=166.6
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~ 146 (1342)
++....+++ .+++++|.+.+++++ +|+.|+..++.++++|||+|+++...++++..... .....|+ ++..++
T Consensus 64 ~p~~~~Le~----~lA~l~G~~~~~~~~-sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~vd 136 (398)
T PRK07504 64 NPTVDMFEK----RMCALEGAEDARATA-SGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGI--ESTLVD 136 (398)
T ss_pred CchHHHHHH----HHHHHhCCCeeeEec-CHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCe--EEEEEC
Confidence 444556665 899999999888877 99999998888889999999988777766543332 2334465 444333
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+|++++++++++ ++++|+++++++| ...|+++|.++|+++|+++|+|++|+.+... .+.. .+|++
T Consensus 137 -----~~d~e~l~~ai~~-~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~-----~~~~~gaDiv 205 (398)
T PRK07504 137 -----GLDLDNWEKAVRP-NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQ-----KPLELGAHIV 205 (398)
T ss_pred -----CCCHHHHHHhcCc-CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccC-----CchhhCCCEE
Confidence 2589999998875 4567776666666 5559999999999999999999999866542 2222 37999
Q ss_pred EecCCccCCCCC---eeEEEEechhHHH-HhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKKKYKKI-INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~~l~~~-l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|+||+++|+. ||+++++++++.. ++.... ..+...++..+++.... +. .+..+.++..+++..+.+.|
T Consensus 206 v~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~--~~g~~~s~~~A~~~l~~---L~-tl~~R~~~~~~na~~la~~L 279 (398)
T PRK07504 206 VYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFR--HTGPSLSPFNAWTLLKG---LE-TLPVRVRQQTESAAAIADFL 279 (398)
T ss_pred EeeccccccCCccceEEEEEeCcHHHHHHHHHHHH--HhCCCCCHHHHHHHHhc---cc-hHHHHHHHHHHHHHHHHHHH
Confidence 999999995532 4888888876543 332111 12333444544443332 22 45567788889999999999
Q ss_pred HhCC-cE-EeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCceee
Q psy13354 300 DQRG-IR-IVSGG---------------TKSHIILVDLRNKKITGKIAESILESANIICN 342 (1342)
Q Consensus 300 ~~~g-~~-~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~ 342 (1342)
++.. +. +..++ ..+.++.+.+.+ +.+.+..+++.-.+.-.
T Consensus 280 ~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~---~~~~~~~~~~~l~~~~~ 336 (398)
T PRK07504 280 AGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKG---GKEAAFRFLNALKIVRI 336 (398)
T ss_pred HcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCC---CHHHHHHHHHhCCccee
Confidence 8853 33 22211 114467777753 24556677776555443
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.7e-14 Score=172.86 Aligned_cols=233 Identities=17% Similarity=0.201 Sum_probs=152.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCC----cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLH----HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~----~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
..+|+.||+|+.|++++||++.++.+..++....++ +.++|+||+|+|||++++.+++.+......+. .+..|
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~---npv~~ 147 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS---NPTLP 147 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh---hhhhh
Confidence 358999999999999999999999999998765433 45899999999999999999999874321111 01111
Q ss_pred CCCcchhhhccCCCccEEEEcc---CCCcCHHHHHHHHHHHhhc--C----ccCCceEEEeccCccCCH---HHHHHHHH
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDA---ASTRGINEMAQLLEQTIYA--P----INARYKIYVIDEVHMLTH---HAFNAMLK 521 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~---~~~~~~~~i~~ii~~~~~~--p----~~~~~rvviIDE~~~L~~---~~~~~Ll~ 521 (1342)
. ...... .....+.. ......+.+.+++..+... . ..++++||+|||++.+.. ..+..++.
T Consensus 148 ~------~~~~~~-~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr 220 (637)
T TIGR00602 148 D------FQKNDH-KVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILR 220 (637)
T ss_pred c------cccccc-ccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHH
Confidence 1 111000 00000000 0023346677777766521 1 235788999999965432 23444444
Q ss_pred --hhcCCCCcEEEEEEeCCCC---------CCh------HHHhc--cEEEEEEcCCCHHHHHHHHHHHHHhcCCC-----
Q psy13354 522 --TLEEPPKYIKFILATTEPQ---------KIP------ITVLS--RCIQFNLKKMLHHDIVNNLCYILNKENIK----- 577 (1342)
Q Consensus 522 --~Le~p~~~~vlIl~t~~~~---------kl~------~~L~s--R~~~i~~~~l~~~el~~~l~~~~~~~g~~----- 577 (1342)
+.+.. .+.+|+++++.. .+. +.|++ |+.++.|.|+...++.+.|..+++.++..
T Consensus 221 ~~~~e~~--~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~ 298 (637)
T TIGR00602 221 WKYVSIG--RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKI 298 (637)
T ss_pred HHhhcCC--CceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccccc
Confidence 44443 344566555321 122 68887 66889999999999999999999876532
Q ss_pred -c-chhHHHHHHHhcCCcHHHHHHHHHHHHhhcC--------CCCCHHHHHHHhc
Q psy13354 578 -F-ETSALNLIATGAQGSMRDALSLTDQAINYSS--------EKITLNSMQEMLS 622 (1342)
Q Consensus 578 -i-~~~al~~La~~~~g~lr~a~~~L~kl~~~~~--------~~It~e~V~~~v~ 622 (1342)
+ ++++++.|+..++||+|.|++.|+-++.-.+ ..++..+|.....
T Consensus 299 ~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~ 353 (637)
T TIGR00602 299 KVPKKTSVELLCQGCSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKI 353 (637)
T ss_pred ccCCHHHHHHHHHhCCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccc
Confidence 2 4689999999999999999999987654321 1255566555543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=165.14 Aligned_cols=211 Identities=17% Similarity=0.179 Sum_probs=147.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccch-hhHHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLT-HGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s-~~~~~~~~g~~~~~v~~~ 146 (1342)
.+...++++ .++++.|.+.+++++ +|++|+..++.++++|||+|+++...++..+. ....+...|+.+. .++
T Consensus 44 ~p~~~~L~~----~lA~l~g~~~~v~~~-sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~--~~~ 116 (376)
T PRK06460 44 NPTVLELTK----KIVELENAEMGVAFS-SGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVD--ASN 116 (376)
T ss_pred CccHHHHHH----HHHHHhCCCcEEEeC-CHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEE--EEC
Confidence 444555555 899999998888887 99999999999999999999987655543332 3344566676444 344
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-CCCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-PFADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~~~Div 223 (1342)
.+ +.+.+++.+ ..+++++++++++|| ...++++|+++|+++|++||+|++|+.+.. ..++ ..+|++
T Consensus 117 ~~-----~~~~l~~~~-~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~-----~~~l~~~~div 185 (376)
T PRK06460 117 PG-----SDNIIEKAK-SKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPIN-----QKPLELGADIV 185 (376)
T ss_pred CC-----CHHHHHHhc-CCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcccc-----CChhhcCCCEE
Confidence 43 233444433 345678777777776 556999999999999999999999875421 1122 236999
Q ss_pred EecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
+.|+||+++|+. +|++++++++++.++.....+..+ ..+..+ ..++ ... ++++.+++++.+++.++.+.|+
T Consensus 186 v~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~--~~~~~a--~~~l-~~~-~~l~~r~~~~~~n~~~l~~~L~ 259 (376)
T PRK06460 186 VHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTS--LDPHAA--YLTL-RGI-KTLKIRMDVINRNAEQIAEFLE 259 (376)
T ss_pred EeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCC--CCHHHH--HHHH-hch-hhHHHHHHHHHHHHHHHHHHHH
Confidence 999999996654 599999999888887644444332 233222 2222 222 3667788999999999999998
Q ss_pred hC
Q psy13354 301 QR 302 (1342)
Q Consensus 301 ~~ 302 (1342)
+.
T Consensus 260 ~~ 261 (376)
T PRK06460 260 GH 261 (376)
T ss_pred cC
Confidence 75
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-13 Score=163.29 Aligned_cols=309 Identities=15% Similarity=0.127 Sum_probs=178.8
Q ss_pred Cceeeeec--CCCCc---HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIAS--ENYTS---LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~--~n~l~---~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..|.+.++ +++++ |.+.+++.+++.. +. .. ...| .. +...++++++++++|.+++++++ ||++|+
T Consensus 28 ~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~--~~-~~~~-~~----~~~~~l~~~la~~~g~~~~~~~~-sg~~a~ 97 (379)
T TIGR00707 28 EYLDFVAGIAVNSLGHAHPKLVEALKEQLEK-LV--HV-SNLY-YT----EPQEELAEKLVEHSGADRVFFCN-SGAEAN 97 (379)
T ss_pred EEEEcCcchhhccCCCCCHHHHHHHHHHHhh-cc--cc-cccc-CC----HHHHHHHHHHHhhCCCCEEEEeC-CcHHHH
Confidence 44655553 45443 4588888888753 21 11 1112 22 33444555999999988655555 999999
Q ss_pred HHHHHHc---cC----CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCC----CHHHHHHHHHhcCCeEEE
Q psy13354 103 QAVFFSV---LN----PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKI----DYKKVEYLAKKNKPKLII 171 (1342)
Q Consensus 103 ~~al~al---~~----pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~i----d~e~Le~~i~~~~~~liv 171 (1342)
..++.++ .. +||+|++++..+.++............ ......+...+... |++.+++.+++ ++++++
T Consensus 98 ~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~ 175 (379)
T TIGR00707 98 EAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPK-YQKGFEPLVPGFSYAPYNDIESLKKAIDD-ETAAVI 175 (379)
T ss_pred HHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChh-hhccCCCCCCCceeeCCCCHHHHHHHhhh-CeeEEE
Confidence 9998865 22 379999877665544333222111000 00000111111111 79999998876 456666
Q ss_pred EcCCCCC-cc-----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCCC-eeEEEE
Q psy13354 172 AGASAYS-QY-----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGPR-GGFILM 241 (1342)
Q Consensus 172 ~~~s~~~-~~-----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp~-GG~iv~ 241 (1342)
+++.+++ +. .++++|.++|++||+++|+||+|. +....+.... ... ..|++ ++||+++++. .||+++
T Consensus 176 ~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~-~~~~~g~~~~~~~~~~~~d~~--t~sK~~~~G~riG~~~~ 252 (379)
T TIGR00707 176 VEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQT-GIGRTGKFFAYEHYGIEPDII--TLAKGLGGGVPIGATLA 252 (379)
T ss_pred EEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhhhHHhcCCCCCEE--EEcccccCCcccEEEEE
Confidence 6555444 21 248999999999999999999986 2211121110 111 24655 5789994221 299999
Q ss_pred echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEe--eCCCCCeEEEEE
Q psy13354 242 KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV--SGGTKSHIILVD 319 (1342)
Q Consensus 242 ~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~--~~~~~~~~v~i~ 319 (1342)
++++++.+........++ .+...+.++..++. ... . .++.+++.++++++++.|.+.+.... .....+.++|+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~-~~~~~~~aa~aaL~-~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~ 328 (379)
T TIGR00707 253 KEEVAEAFTPGDHGSTFG-GNPLACAAALAVLE-VIE-K-ERLLENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIE 328 (379)
T ss_pred cHHHHhhhcCCCCCCCCC-CCHHHHHHHHHHHH-HHH-h-hhHHHHHHHHHHHHHHHHHHHHhhCCCCccccCceEEEEE
Confidence 999988887643333333 23444444444443 322 1 24567788888888888876533221 111346678887
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++.. +.++... +.++||.+.+.. .+++|++++..++
T Consensus 329 ~~~~--~~~~~~~-l~~~Gv~v~~~~----------~~~lRi~~~~~~t 364 (379)
T TIGR00707 329 LEAP--CKDIVKK-ALEKGLLVNCAG----------PKVLRFLPPLIIT 364 (379)
T ss_pred ecCc--HHHHHHH-HHHCCcEEeeCC----------CCEEEEECCCcCC
Confidence 7542 3455555 555699998631 2469999876555
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=165.98 Aligned_cols=206 Identities=17% Similarity=0.192 Sum_probs=145.2
Q ss_pred HHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCCHH
Q psy13354 78 AINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKIDYK 156 (1342)
Q Consensus 78 ~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id~e 156 (1342)
+++.++++.|.+++++++ ||++|+..++.++++|||+|+++...|++...... .....|. +++.++.. |++
T Consensus 65 Le~~lA~l~g~~~~v~~~-sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~--~v~~v~~~-----d~~ 136 (405)
T PRK08776 65 LGEALAELEGGAGGVITA-TGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHF--ALITADLT-----DPR 136 (405)
T ss_pred HHHHHHHHhCCCceEEEc-CHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCc--EEEEECCC-----CHH
Confidence 444899999988887777 89999999999999999999987766655333222 2333444 45544542 889
Q ss_pred HHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCC
Q psy13354 157 KVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRG 233 (1342)
Q Consensus 157 ~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~g 233 (1342)
.+++.+++ +++++++++++|| ...++++|+++|+++|++||+|++|..+.. ..++. .+|++++|++|+++|
T Consensus 137 ~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~-----~~pl~~gaDivv~S~tK~l~g 210 (405)
T PRK08776 137 SLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPAL-----QKPLEFGADLVLHSTTKYING 210 (405)
T ss_pred HHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccccc-----CCcccccCCEEEecCceeecC
Confidence 99998865 5677777776666 455999999999999999999999875432 22333 379999999999976
Q ss_pred CC---eeEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 234 PR---GGFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 234 p~---GG~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
+. ||+++++ +++.+.+....... +...++..+.+.. ..+ ++++.+.++..+|+..+.+.|++..
T Consensus 211 ~~~~~~G~vv~~~~~l~~~l~~~~~~~--g~~~s~~~a~l~~---~gl-~tl~~r~~~~~~na~~la~~L~~~p 278 (405)
T PRK08776 211 HSDVVGGAVVARDAELHQQLVWWANAL--GLTGSPFDAFLTL---RGL-RTLDARLRVHQENADAIAALLDGHA 278 (405)
T ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhc--CCCCCHHHHHHHH---hhh-CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 64 4877774 56666665422221 1112333333322 233 3677888999999999999998753
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=165.97 Aligned_cols=212 Identities=18% Similarity=0.219 Sum_probs=150.2
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++...++++ .+++++|.+.+++++ ||++|+..++.+++++||+|++....+++.+... ..+...|.. +..++
T Consensus 53 ~p~~~~le~----~la~l~g~~~~~~~~-sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~--v~~v~ 125 (380)
T TIGR01325 53 NPTVAAFEE----RIAALEGAERAVATA-TGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIE--VSFVD 125 (380)
T ss_pred CchHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCE--EEEEC
Confidence 344555665 899999998777766 9999999999999999999998776665543332 234556664 44445
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++.+++.+.+ ++++|++..+++| ...|+++|.++|+++|++||+|++|+.+... .++. .+|++
T Consensus 126 ~~-----d~~~l~~~i~~-~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~-----~pl~~g~Div 194 (380)
T TIGR01325 126 PT-----DLNAWEAAVKP-NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQ-----QPLKLGADVV 194 (380)
T ss_pred CC-----CHHHHHHhcCC-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC-----CchhhCCCEE
Confidence 43 78899888865 4567777666665 5559999999999999999999998754331 1233 37999
Q ss_pred EecCCccCCCC---CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGP---RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 224 v~S~sK~l~gp---~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
++|++|+++|+ .||++++++++++.++..... .+....+..+++ ++ ..+ ..+..+.++..+++..+.+.|+
T Consensus 195 v~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~--~g~~~~p~~a~~--~l-~~l-~tl~~r~~~~~~~a~~la~~L~ 268 (380)
T TIGR01325 195 VYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRH--TGPAMSPFNAWV--LL-KGL-ETLSLRMQKQFDSALAIAEWLQ 268 (380)
T ss_pred EeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHh--hCCCCCHHHHHH--HH-hcc-CcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999553 248999998887777653222 233333333322 22 223 2556678889999999999998
Q ss_pred hCC
Q psy13354 301 QRG 303 (1342)
Q Consensus 301 ~~g 303 (1342)
+.+
T Consensus 269 ~~p 271 (380)
T TIGR01325 269 AQP 271 (380)
T ss_pred cCC
Confidence 864
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-14 Score=166.30 Aligned_cols=212 Identities=16% Similarity=0.125 Sum_probs=149.0
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++....|++ .++++.|...+++++ ||++|+..++.++++|||+|++++..|++..... ..+...|+. +..++
T Consensus 60 npt~~~Le~----~iA~le~~~~~~~~~-sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~--v~~v~ 132 (394)
T PRK09028 60 TPTHFAFQA----AIVELEGGAGTALYP-SGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIE--TTYYD 132 (394)
T ss_pred CchHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceE--EEEEC
Confidence 445556666 788888877777777 9999999999999999999998877665544322 233445553 33334
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Div 223 (1342)
.+ +.+.+++++.+ ++++|+++.++|| ...++++|+++|+++|+++++|++|+.+.. ..|++. +|++
T Consensus 133 ~~-----~~e~l~~~l~~-~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~-----~~Pl~~GaDiv 201 (394)
T PRK09028 133 PM-----IGEGIRELIRP-NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN-----SRPFEMGVDIS 201 (394)
T ss_pred CC-----CHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc-----CCccccCceEE
Confidence 32 56778888865 4566666666666 345999999999999999999999986543 334553 8999
Q ss_pred EecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
+.|.+||++|+.. |+++.++++.+.+..... ..|...+|..+.+. ..-+. -+.-+.++..+++..+.+.|+
T Consensus 202 v~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~--~~G~~~~p~~a~l~---~rgl~-TL~lR~~~~~~na~~la~~L~ 275 (394)
T PRK09028 202 IQAATKYIVGHSDVMLGTATANEKHWDQLREHSY--LMGQCTSPDDVYLA---MRGLR-TLGVRLAQHEKNALKVANWLA 275 (394)
T ss_pred EEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHHH---HcccC-cHHHHHHHHHHHHHHHHHHHh
Confidence 9999999977643 888777776666653211 22444444444322 22222 566778999999999999999
Q ss_pred hCC
Q psy13354 301 QRG 303 (1342)
Q Consensus 301 ~~g 303 (1342)
+..
T Consensus 276 ~~p 278 (394)
T PRK09028 276 TRP 278 (394)
T ss_pred cCC
Confidence 864
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.6e-14 Score=155.36 Aligned_cols=202 Identities=12% Similarity=0.140 Sum_probs=139.6
Q ss_pred CCCCccccccchhhH--HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 386 RPSNFNTLIGQNHIS--KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~--~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
.+.+|++.+++++.. ..+.+.... ...+.++||||+|+|||++++++++++...+.
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~--------------------- 68 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFID-LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQR--------------------- 68 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhc-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC---------------------
Confidence 456899998766542 333333332 33356899999999999999999999753210
Q ss_pred cCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC--HHHHHHHHHhhcCCC--CcEEEEEEeCCC
Q psy13354 464 NGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--HHAFNAMLKTLEEPP--KYIKFILATTEP 539 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--~~~~~~Ll~~Le~p~--~~~vlIl~t~~~ 539 (1342)
..-|+.++.... ...++++. ..+..+++|||++.+. .+....|+.+++.-. ...++|++++..
T Consensus 69 ---~~~y~~~~~~~~----~~~~~~~~------~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 69 ---TAIYIPLSKSQY----FSPAVLEN------LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred ---CeEEeeHHHhhh----hhHHHHhh------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 011222221110 11122222 2345699999999874 233345656554321 234556666653
Q ss_pred C----CChHHHhccEE---EEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh--c-C
Q psy13354 540 Q----KIPITVLSRCI---QFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY--S-S 609 (1342)
Q Consensus 540 ~----kl~~~L~sR~~---~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~--~-~ 609 (1342)
. ...+.+.||+. ++++.+|+.++...++++.+..+++.++++++++|+++++||+|.+.+.++++... . +
T Consensus 136 p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~ 215 (229)
T PRK06893 136 PHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQ 215 (229)
T ss_pred hHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC
Confidence 3 23479999984 89999999999999999999999999999999999999999999999999987533 2 4
Q ss_pred CCCCHHHHHHHhc
Q psy13354 610 EKITLNSMQEMLS 622 (1342)
Q Consensus 610 ~~It~e~V~~~v~ 622 (1342)
..||.+.|++++.
T Consensus 216 ~~it~~~v~~~L~ 228 (229)
T PRK06893 216 RKLTIPFVKEILG 228 (229)
T ss_pred CCCCHHHHHHHhc
Confidence 5699999998764
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.4e-14 Score=154.47 Aligned_cols=209 Identities=14% Similarity=0.211 Sum_probs=144.3
Q ss_pred HHhhccCC-CCccccccc-hhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 380 VLARKYRP-SNFNTLIGQ-NHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 380 ~l~~k~~p-~~f~~lvGq-~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+|.-.++| .+|++.++. ......+.... .+...+.++|+|++|+|||+++++++..+...+
T Consensus 7 ~l~~~~~~~~~f~~f~~~~~n~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~---------------- 69 (233)
T PRK08727 7 PLALRYPSDQRFDSYIAAPDGLLAQLQALA-AGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG---------------- 69 (233)
T ss_pred cccCCCCCcCChhhccCCcHHHHHHHHHHH-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC----------------
Confidence 44444444 378887654 44444444333 344456699999999999999999999875321
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC--HHHHHHHHHhhcCCC-CcEEEEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--HHAFNAMLKTLEEPP-KYIKFIL 534 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--~~~~~~Ll~~Le~p~-~~~vlIl 534 (1342)
. .+..++... ....+.+.++.. .+..+|+|||++.+. ......|+++++.-. ....+|+
T Consensus 70 --------~--~~~y~~~~~--~~~~~~~~~~~l------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ 131 (233)
T PRK08727 70 --------R--SSAYLPLQA--AAGRLRDALEAL------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLY 131 (233)
T ss_pred --------C--cEEEEeHHH--hhhhHHHHHHHH------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEE
Confidence 1 112222211 111223333332 233599999999885 334455666655321 1334677
Q ss_pred EeCCCC----CChHHHhcc---EEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 535 ATTEPQ----KIPITVLSR---CIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 535 ~t~~~~----kl~~~L~sR---~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
+++.+. .+.+.++|| |.++.|++|+.+++..++++++..+|+.++++++++|++.++||+|.+++.|+++..+
T Consensus 132 ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~ 211 (233)
T PRK08727 132 TARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRE 211 (233)
T ss_pred ECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 776543 346899999 7899999999999999999999999999999999999999999999999999887642
Q ss_pred ---cCCCCCHHHHHHHhcc
Q psy13354 608 ---SSEKITLNSMQEMLSI 623 (1342)
Q Consensus 608 ---~~~~It~e~V~~~v~~ 623 (1342)
.+..||.+.+++++..
T Consensus 212 ~~~~~~~it~~~~~~~l~~ 230 (233)
T PRK08727 212 SLAAKRRVTVPFLRRVLEE 230 (233)
T ss_pred HHHhCCCCCHHHHHHHHhh
Confidence 3456999999988754
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=163.80 Aligned_cols=212 Identities=18% Similarity=0.153 Sum_probs=148.0
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++...+|++ .++++.|.+.+++++ ||++|+..++.++++|||+|+++...|++....+ ......|+ ++..+
T Consensus 63 ~~pt~~~Le~----~lA~l~g~~~~l~~~-sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi--~v~~v 135 (394)
T PRK07050 63 ATPTSLALAQ----RLAEIEGGRHALLQP-SGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGI--TVRFY 135 (394)
T ss_pred CCHHHHHHHH----HHHHHhCCCeEEEec-cHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCe--EEEEE
Confidence 3454555555 899999988777776 9999999999999999999999887777655433 23455566 44444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.. +.+.+++.+++ ++++|++++++++ ...++++|+++|+++|++||+|++|+.+.... ++. .+|+
T Consensus 136 d~~-----~~~~l~~~i~~-~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~-----~l~~GaDi 204 (394)
T PRK07050 136 DPL-----IGAGIADLIQP-NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFK-----PFEHGVDI 204 (394)
T ss_pred CCC-----CHHHHHHhcCC-CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccC-----HHHcCCeE
Confidence 432 45778888765 4577777766666 55599999999999999999999998765422 232 3699
Q ss_pred EEecCCccCCCCC---eeEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
++.|++|+++|.. ||++++ ++++.+.++..... .|....+..+ ..++ ..+. .+..+.++..+++..+.+.
T Consensus 205 ~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~--~G~~~~~~~a--~l~l-r~l~-tl~~Rl~~~~~~a~~la~~ 278 (394)
T PRK07050 205 SVQALTKYQSGGSDVLMGATITADAELHAKLKLARMR--LGIGVSADDC--SLVL-RGLP-SLQVRLAAHDRSALEVAEW 278 (394)
T ss_pred EEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHh--cCCCCCHHHH--HHHH-cCCC-cHHHHHHHHHHHHHHHHHH
Confidence 9999999996543 577776 45777776543222 1222233222 2222 2232 4555778888999999999
Q ss_pred HHhC
Q psy13354 299 LDQR 302 (1342)
Q Consensus 299 L~~~ 302 (1342)
|++.
T Consensus 279 L~~~ 282 (394)
T PRK07050 279 LKAR 282 (394)
T ss_pred HHhC
Confidence 9885
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=156.66 Aligned_cols=190 Identities=17% Similarity=0.282 Sum_probs=136.7
Q ss_pred CccccccchhhHHHHHHHHH----------cC----CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 389 NFNTLIGQNHISKSLINALD----------KK----RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~----------~~----~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
.+++++|++.+++.+.+.+. .| .....++|+||||||||++|+.+++.+...+.. ++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~--------~~- 74 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVL--------SK- 74 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcc--------cC-
Confidence 35789999999877764431 11 123458999999999999999999988532100 01
Q ss_pred CCcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC--------HHHHHHHH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------HHAFNAML 520 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------~~~~~~Ll 520 (1342)
..+++++.++. .....+.++++.+. ..|++|||+|.|. .+.++.|+
T Consensus 75 -------------~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~-------~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll 134 (261)
T TIGR02881 75 -------------GHLIEVERADLVGEYIGHTAQKTREVIKKAL-------GGVLFIDEAYSLARGGEKDFGKEAIDTLV 134 (261)
T ss_pred -------------CceEEecHHHhhhhhccchHHHHHHHHHhcc-------CCEEEEechhhhccCCccchHHHHHHHHH
Confidence 11222222111 11233455554431 2499999999875 45678899
Q ss_pred HhhcCCCCcEEEEEEeCCCC-----CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh-----
Q psy13354 521 KTLEEPPKYIKFILATTEPQ-----KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG----- 589 (1342)
Q Consensus 521 ~~Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~----- 589 (1342)
+.+++...++++|+++...+ .+.+++.+|+ ..+.|++++.+++.+++++.++..+..++++++..|++.
T Consensus 135 ~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~ 214 (261)
T TIGR02881 135 KGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVD 214 (261)
T ss_pred HHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHH
Confidence 99998877887777754322 3567999999 789999999999999999999999999999999998654
Q ss_pred -----cCCcHHHHHHHHHHHHhh
Q psy13354 590 -----AQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 590 -----~~g~lr~a~~~L~kl~~~ 607 (1342)
..||.|.+.+.++++...
T Consensus 215 ~~~~~~~gn~R~~~n~~e~a~~~ 237 (261)
T TIGR02881 215 QLSSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred hccCCCCchHHHHHHHHHHHHHH
Confidence 358999999999986643
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=162.43 Aligned_cols=242 Identities=17% Similarity=0.188 Sum_probs=161.8
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~ 146 (1342)
+++...+||+ .++++.|.+++++++ ||++|+.+++. ++++||+|+++...+++...........+ ++..
T Consensus 52 ~~p~~~~le~----~lA~leg~~~~v~~~-sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~~-~~~~---- 120 (364)
T PRK07269 52 KNPTRAKLEE----TLAAIESADYALATS-SGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKEG-RFHF---- 120 (364)
T ss_pred CCccHHHHHH----HHHHHhCCCeEEEeC-CHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhcC-cEEE----
Confidence 4566667777 899999988888887 99999999984 67999999998877766544332221111 1111
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
++..|++++++++++ ++++|+++.++|| ...++++|+++|+++|+++|+|+++..+.. ..++. .+|++
T Consensus 121 ---~~~~d~~~l~~~i~~-~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~-----~~pl~~gaDiv 191 (364)
T PRK07269 121 ---TYANTEEELIAAIEE-DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIY-----QRPIELGADIV 191 (364)
T ss_pred ---EecCCHHHHHHhcCc-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc-----CCchhhCCcEE
Confidence 123589999999876 4567766666666 445999999999999999999999765432 22333 48999
Q ss_pred EecCCccCCCCC---eeEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|++|+++|.. ||+++++ +++.+.++.... ..|...++..+++.... + ..+..+.++..+++..+.+.|
T Consensus 192 v~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~--~~G~~~s~~~a~l~~~~---L-~tL~~r~~~~~~na~~~a~~L 265 (364)
T PRK07269 192 LHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLN--TTGAVLSPFDSYLLMRG---L-KTLSLRMERSTANAQEVVAFL 265 (364)
T ss_pred EecCceeccCCCcccceEEEeCcHHHHHHHHHHHH--HhCCCCCHHHHHHHHcC---C-CcHHHHHHHHHHHHHHHHHHH
Confidence 999999996533 5988875 466666653211 22333344544433222 2 256677889999999999999
Q ss_pred HhCC-c-EEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 300 DQRG-I-RIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 300 ~~~g-~-~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
++.. + .+..++ .+.++.+.+.. .+.+.++++.-.+
T Consensus 266 ~~~p~v~~v~ypg-~gg~~sf~~~~----~~~~~~f~~~l~~ 302 (364)
T PRK07269 266 KKSPAVKEVLYTG-KGGMISFKVAD----ETRIPHILNSLKV 302 (364)
T ss_pred HhCCCccEEeCCC-cCcEEEEEECC----HHHHHHHHHhCCc
Confidence 9864 3 343333 34556666542 3445566655333
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-13 Score=157.95 Aligned_cols=249 Identities=13% Similarity=0.143 Sum_probs=170.3
Q ss_pred CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEE
Q psy13354 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSIC 144 (1342)
Q Consensus 66 ~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~ 144 (1342)
.+++....||+ .++++-|.+.+++++ ||+.|+.+++.+++++||+|+++...|++..... ..+...|+.+..+
T Consensus 59 ~~nPt~~~le~----~la~LEg~~~a~~~~-SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~v- 132 (395)
T PRK08114 59 RGTLTHFSLQE----AMCELEGGAGCALYP-CGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWF- 132 (395)
T ss_pred CCChhHHHHHH----HHHHHhCCCeEEEEh-HHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEE-
Confidence 35666777777 888899999999999 8999999999999999999998776666554443 3345567754444
Q ss_pred ecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcC--CEEEEEcccchhhhhcCCCCCCCCC-
Q psy13354 145 YGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNIN--SYFMVDMAHYAGLIAAGEYPNPVPF- 219 (1342)
Q Consensus 145 ~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~g--i~LIvDea~~~g~~~~~~~~~~l~~- 219 (1342)
+.. |.+.++++++++ +++|++..+.++ ...|+++|+++|+++| +++++|.+++.+.. ..+++.
T Consensus 133 -d~~-----d~~~l~~~l~~~-TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-----~~pl~~G 200 (395)
T PRK08114 133 -DPL-----IGADIAKLIQPN-TKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-----FKALDFG 200 (395)
T ss_pred -CCC-----CHHHHHHhcCCC-ceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-----cCHHHcC
Confidence 432 788999998764 466665544444 4559999999999984 99999999877644 334443
Q ss_pred CcEEEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q psy13354 220 ADFITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILS 296 (1342)
Q Consensus 220 ~Divv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~ 296 (1342)
+|+++.|.+|+++|+. +|+++.+++..+.++... ...|...+|..+.+ . ..-++ -+.-+.++..+++..+.
T Consensus 201 aDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~--~~~G~~~~p~~a~l--~-~rgl~-TL~lR~~~~~~na~~va 274 (395)
T PRK08114 201 IDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENS--YLMGQMVDADTAYM--T-SRGLR-TLGVRLRQHEESSLKVA 274 (395)
T ss_pred CcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHH--HhccCCCCHHHHHH--H-HcCCC-cHHHHHHHHHHHHHHHH
Confidence 8999999999997764 388887776655554321 12344434444432 2 22222 45667899999999999
Q ss_pred HHHHhCC-cE-EeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 297 KILDQRG-IR-IVSGG---------------TKSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 297 ~~L~~~g-~~-~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
+.|++.. +. +..++ ..+.++.+.+++. .+.+.+.++++.-.+
T Consensus 275 ~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~-~~~~~~~~f~~~l~l 333 (395)
T PRK08114 275 EWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKK-LTDEQLANYLDNFSL 333 (395)
T ss_pred HHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCc-ccHHHHHHHHHhCCc
Confidence 9999864 32 22221 1234666776532 124556667666444
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-13 Score=160.49 Aligned_cols=241 Identities=15% Similarity=0.145 Sum_probs=154.3
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHc---CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCC--CCCCcccCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDK---KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID--GNGGITSQP 452 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~---~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~--~~~~~~~~~ 452 (1342)
..+|...|.|. +++|++..++.|...+.. +..++.++++||+|+|||++++.+.+.+...... ......+.+
T Consensus 5 ~~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 5 RDLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred hhhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 34677789995 689999999888888753 5566679999999999999999999988532110 000122333
Q ss_pred CCCCcchhhhccCCCccEE--EEccC-CCcCH-HHHHHHHHHHhhcCccCCceEEEeccCccCCH---HHHHHHHHh--h
Q psy13354 453 CGKCSVCVKIDNGCFMDYI--EMDAA-STRGI-NEMAQLLEQTIYAPINARYKIYVIDEVHMLTH---HAFNAMLKT--L 523 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~--~i~~~-~~~~~-~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~---~~~~~Ll~~--L 523 (1342)
|..+.+-..+.......+. ..... ..... +.+..+.+.+. ..+++.||+|||+|.+.. +....|++. .
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~ 158 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELN---ERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSN 158 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCeEEEEECchhhhccCCcHHHHhHhccccc
Confidence 4333221111100000000 00000 00011 12233333322 123456899999999942 234455555 2
Q ss_pred cCC-CCcEEEEEEeCCCC---CChHHHhccE--EEEEEcCCCHHHHHHHHHHHHHh--cCCCcchhHHHHHHHh---cCC
Q psy13354 524 EEP-PKYIKFILATTEPQ---KIPITVLSRC--IQFNLKKMLHHDIVNNLCYILNK--ENIKFETSALNLIATG---AQG 592 (1342)
Q Consensus 524 e~p-~~~~vlIl~t~~~~---kl~~~L~sR~--~~i~~~~l~~~el~~~l~~~~~~--~g~~i~~~al~~La~~---~~g 592 (1342)
.+. ...+.+|+++|.++ .+.+.+.+|+ ..+.|+|++.+++..++..+++. .+..+++++++++++. +.|
T Consensus 159 ~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 238 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG 238 (365)
T ss_pred cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC
Confidence 222 35788899998875 4667888887 57999999999999999999873 2345888888876654 579
Q ss_pred cHHHHHHHHHHHHhhcC----CCCCHHHHHHHhccC
Q psy13354 593 SMRDALSLTDQAINYSS----EKITLNSMQEMLSII 624 (1342)
Q Consensus 593 ~lr~a~~~L~kl~~~~~----~~It~e~V~~~v~~~ 624 (1342)
|+|.+++.|+++...+. ..||.++|++++...
T Consensus 239 d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 239 DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 99999999999876542 359999999887654
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-13 Score=151.36 Aligned_cols=207 Identities=18% Similarity=0.274 Sum_probs=154.9
Q ss_pred hccCCCCccccccchhhHHHHHHHHHcC------------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCccc
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINALDKK------------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITS 450 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l~~~------------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~ 450 (1342)
.+-...+++++=|.+..++++++++.-. ..|.++|||||||||||.+|+++|++.++
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A----------- 211 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA----------- 211 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-----------
Confidence 3344558999999999999999998421 56789999999999999999999998875
Q ss_pred CCCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------H
Q psy13354 451 QPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------H 513 (1342)
Q Consensus 451 ~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~ 513 (1342)
.|+.+.++. ..|..-+++++..+... .+.||||||+|.+. .
T Consensus 212 ------------------tFIrvvgSElVqKYiGEGaRlVRelF~lArek----aPsIIFiDEIDAIg~kR~d~~t~gDr 269 (406)
T COG1222 212 ------------------TFIRVVGSELVQKYIGEGARLVRELFELAREK----APSIIFIDEIDAIGAKRFDSGTSGDR 269 (406)
T ss_pred ------------------eEEEeccHHHHHHHhccchHHHHHHHHHHhhc----CCeEEEEechhhhhcccccCCCCchH
Confidence 366665542 23445677777766543 45699999999883 2
Q ss_pred HHHHHHHHhhc-----CCCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHH
Q psy13354 514 HAFNAMLKTLE-----EPPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNL 585 (1342)
Q Consensus 514 ~~~~~Ll~~Le-----~p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~ 585 (1342)
+.+..++++|. ++..++.+|++||+++-++|+|++ |+ ..++|+.|+.+...++++-+.++..+. ++-.++.
T Consensus 270 EVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~ 348 (406)
T COG1222 270 EVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLEL 348 (406)
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHH
Confidence 34555666654 356799999999999999999996 44 689999999999999999888776653 3345888
Q ss_pred HHHhcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 586 IATGAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 586 La~~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
|++.++| +-.++.+.+..+-.++ ...||.+|..+++..
T Consensus 349 la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 349 LARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 8888765 4444555555555554 234999988877743
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=162.48 Aligned_cols=212 Identities=18% Similarity=0.196 Sum_probs=147.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~ 146 (1342)
++....+++ .++++.|.+.+++++ ||++|+..++.+++++||+|+++...+++....... ....+.. +..++
T Consensus 50 ~p~~~~le~----~lA~l~g~~~v~~~~-gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~--v~~~d 122 (382)
T TIGR02080 50 NPTRDLLQQ----ALAELEGGAGAVVTN-TGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFR--VLFVD 122 (382)
T ss_pred CchHHHHHH----HHHHHhCCCcEEEEc-CHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeE--EEEEC
Confidence 444555666 899999977766666 999999999999999999999888777654443332 2333343 33223
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
. .|++.+++++++ ++++|+++.++|| ...++++|+++|+++|++||+|++|..+... .++. .+|++
T Consensus 123 ~-----~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~-----~pl~~gaDiv 191 (382)
T TIGR02080 123 Q-----GDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQ-----NPLALGADLV 191 (382)
T ss_pred C-----CCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccC-----CchhhCCCEE
Confidence 2 278999998875 4677777776666 4459999999999999999999999765431 1222 36999
Q ss_pred EecCCccCCCCC---eeEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|+||+++|+. +|+++++ +++.+.+..... ..+...++..+.+. +. .++ .+..+.++..+|+..+.++|
T Consensus 192 v~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~--~~g~~~sp~~a~l~--lr-~l~-tl~~R~~~~~~na~~~a~~L 265 (382)
T TIGR02080 192 LHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWAN--NLGVTGGAFDSYLT--LR-GLR-TLVARMRLQQRNAQAIVEYL 265 (382)
T ss_pred EeecceeccCCCCceeEEEEeCCHHHHHHHHHHHH--ccCCCCCHHHHHHH--Hc-ccc-hHHHHHHHHHHHHHHHHHHH
Confidence 999999997655 4888774 566666654322 22333344444433 22 222 45566788899999999999
Q ss_pred HhCC
Q psy13354 300 DQRG 303 (1342)
Q Consensus 300 ~~~g 303 (1342)
+..+
T Consensus 266 ~~~p 269 (382)
T TIGR02080 266 QTQP 269 (382)
T ss_pred HhCC
Confidence 8754
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.6e-13 Score=157.58 Aligned_cols=244 Identities=18% Similarity=0.177 Sum_probs=157.0
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+.+....|++ .++++. .+++++++ ||++|+..++.+++++||+|+++...+++...... .+...|+ +++.+
T Consensus 49 ~~p~~~~Le~----~lA~l~-~~~~v~~~-sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v 120 (366)
T PRK07582 49 SNPTWRALEA----ALGELE-GAEALVFP-SGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREA 120 (366)
T ss_pred CCccHHHHHH----HHHHHc-CCCEEEEC-CHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEE
Confidence 3455666777 777777 45676766 99999999999999999999987755544332221 2344565 45555
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.++++ + .+.+ +.++++++.+++| ...++++|+++|+++|+++++|++|..... . .+++ .+|+
T Consensus 121 ~~~~~~----~----~~~~-~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~---~--~p~~~g~Di 186 (366)
T PRK07582 121 PTAGMA----E----AALA-GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLG---Q--RPLELGADL 186 (366)
T ss_pred CCCChH----H----Hhcc-CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccc---c--CchhcCCcE
Confidence 554221 1 2222 4567777777776 355999999999999999999999853211 1 1222 3699
Q ss_pred EEecCCccCCCCCe---eEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPRG---GFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~G---G~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+++|+||+++|+.| ||++++ +++.+.+..... ..+...++..+.+.... +. .+..+.++..+++..+.+.
T Consensus 187 vv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~--~~g~~~~~~~a~l~~r~---l~-tl~~R~~~~~~na~~la~~ 260 (366)
T PRK07582 187 VVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRL--LAGAIPGPFEAWLAHRS---LG-TLGLRFARQCANALAVAEL 260 (366)
T ss_pred EEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHH--HhCCCCCHHHHHHHHhc---cc-cHHHHHHHHHHHHHHHHHH
Confidence 99999999977665 998875 567666654322 11222233433322222 22 4455678889999999999
Q ss_pred HHhCC-cE-EeeCC----C-----------CCeEEEEEccCCCCCHHHHHHHHHHCCceee
Q psy13354 299 LDQRG-IR-IVSGG----T-----------KSHIILVDLRNKKITGKIAESILESANIICN 342 (1342)
Q Consensus 299 L~~~g-~~-~~~~~----~-----------~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~ 342 (1342)
|++.. +. +..++ + .+.++.+.++ +.+.+.++++..++...
T Consensus 261 L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~----~~~~~~~~~~~l~~~~~ 317 (366)
T PRK07582 261 LAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA----DAAAAERFVAASRLVVA 317 (366)
T ss_pred HHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC----CHHHHHHHHHhCCccee
Confidence 99853 32 22111 1 2446667765 24667778888777665
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-13 Score=163.39 Aligned_cols=215 Identities=18% Similarity=0.198 Sum_probs=147.7
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++....||+ .++++.|..++++++ ||+.|+.+++.+++++||+|+++...|++...... .+...|+.+.++
T Consensus 59 ~nPtv~~lE~----~la~leg~~~av~~~-SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~v-- 131 (432)
T PRK06702 59 GNPTLAAFEQ----KLAELEGGVGAVATA-SGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFF-- 131 (432)
T ss_pred CCcHHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEE--
Confidence 3566677777 999999999888877 99999999999999999999998877765544432 246667744444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Di 222 (1342)
+. .+|++.+++++++++ ++|++..+.+| ...|+++|+++|+++|+++|+|++++...+ ..+++. +|+
T Consensus 132 d~----~~d~~~l~~~I~~~T-k~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~-----~~pl~~GADI 201 (432)
T PRK06702 132 NP----NLTADEIVALANDKT-KLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYL-----CQAFEHGANI 201 (432)
T ss_pred CC----CCCHHHHHHhCCcCC-eEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhh-----CChhhcCCCE
Confidence 32 368999999998755 45555455555 444999999999999999999998753322 334543 899
Q ss_pred EEecCCccCCCCCe---eEEEEech----------hH---------------------HHHhhccCCccccCCcHHHHHH
Q psy13354 223 ITSTTHKSLRGPRG---GFILMKKK----------YK---------------------KIINSAVFPGIQGGPLMHVIAA 268 (1342)
Q Consensus 223 vv~S~sK~l~gp~G---G~iv~~~~----------l~---------------------~~l~~~~~~~~~~~~~~~~~~A 268 (1342)
++.|++|+++|..+ |+++.... +. ...+.. ....++..++|..+.
T Consensus 202 vv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~sp~~a~ 280 (432)
T PRK06702 202 IVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQ-LLRDYGNCMSPFNAY 280 (432)
T ss_pred EEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHH-HHHHccCCCCHHHHH
Confidence 99999999966544 76664321 11 001100 011223344444444
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 269 KAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 269 aa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
+... .++ .++.+.++..+|+..+.+.|++.+
T Consensus 281 l~~r---gL~-Tl~lR~~r~~~Na~~la~~L~~~p 311 (432)
T PRK06702 281 ISNI---GLE-TLHLRMERHSENALAVAKWLADHE 311 (432)
T ss_pred HHHh---ccC-cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3322 222 566778888999999999999864
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-12 Score=156.67 Aligned_cols=249 Identities=17% Similarity=0.187 Sum_probs=166.3
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++....|++ .++++.|.+++++++ ||++|+..++.+++++||+|++....|+++.... ..+...|+ +++.++
T Consensus 82 ~Pt~~~Le~----~lA~leg~~~~iv~~-sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi--~~v~~~ 154 (427)
T PRK07049 82 HPNSEIVED----RLAVYEGAESAALFS-SGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGV--GAVGFA 154 (427)
T ss_pred CcCHHHHHH----HHHHHhCCCcEEEEc-cHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCc--EEEEEe
Confidence 455566666 899999988877777 9999999999999999999998887776654432 22345565 444443
Q ss_pred CCCCCCCCHHHHHHHHHh----cCCeEEEEcCCCCC--cccCHHHHHHHHHH------cCCEEEEEcccchhhhhcCCCC
Q psy13354 147 LNKKEKIDYKKVEYLAKK----NKPKLIIAGASAYS--QYIDFERFYHIAKN------INSYFMVDMAHYAGLIAAGEYP 214 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~----~~~~liv~~~s~~~--~~~~l~~I~~la~~------~gi~LIvDea~~~g~~~~~~~~ 214 (1342)
.. .|++.+++.+.+ .+++++++++++|| ...++++|.++|+. ++++||+|+++..... .
T Consensus 155 ~~----~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~-----~ 225 (427)
T PRK07049 155 DG----LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVF-----Q 225 (427)
T ss_pred CC----CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccccc-----C
Confidence 21 367778776642 35678888777777 44589999999988 8999999999653322 1
Q ss_pred CCCC-CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHH
Q psy13354 215 NPVP-FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVK 290 (1342)
Q Consensus 215 ~~l~-~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~ 290 (1342)
.++. .+|+++.|+||+++|..| ||+++++++++.+......+ +...++..+.++ ...+. .+..++++..+
T Consensus 226 ~pl~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~--g~~ls~~~a~l~---~r~L~-tl~~R~~~~~~ 299 (427)
T PRK07049 226 KPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAI--GTQLDPHSCWML---GRSLE-TLVLRMERANR 299 (427)
T ss_pred CccccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhc--CCCCCHHHHHHH---HcCCC-hHHHHHHHHHH
Confidence 2222 369999999999965555 99999998888887643333 333333333322 22222 45566778899
Q ss_pred HHHHHHHHHHhC-CcEEee-CCC-----------------CCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 291 NAKILSKILDQR-GIRIVS-GGT-----------------KSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 291 ~a~~l~~~L~~~-g~~~~~-~~~-----------------~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
++..+.+.|++. ++..+. ++. .+.++.+.+.+ +.+.+.++++.-.++.
T Consensus 300 ~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~---~~~~~~~f~~~l~l~~ 366 (427)
T PRK07049 300 NARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKG---GQAAAFRFLNALQIFK 366 (427)
T ss_pred HHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcC---CHHHHHHHHHcCcccE
Confidence 999999999986 343222 211 12356666653 2455667776655544
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-13 Score=168.57 Aligned_cols=228 Identities=24% Similarity=0.320 Sum_probs=159.5
Q ss_pred HHHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 377 IKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 377 ~~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
....++..+||++|++++||+..++.+.+.+..+... .++|+||+|+|||++|+.+.+........ ++.
T Consensus 140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~-~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~--------~~~-- 208 (615)
T TIGR02903 140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQ-HIILYGPPGVGKTTAARLALEEAKKLKHT--------PFA-- 208 (615)
T ss_pred hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCC-eEEEECCCCCCHHHHHHHHHHhhhhccCC--------ccc--
Confidence 3456788899999999999999999998888766554 48999999999999999998876421100 000
Q ss_pred cchhhhccCCCccEEEEccCCCcC-H------------HH----HHHHHHHHhh------cCccCCceEEEeccCccCCH
Q psy13354 457 SVCVKIDNGCFMDYIEMDAASTRG-I------------NE----MAQLLEQTIY------APINARYKIYVIDEVHMLTH 513 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~~~-~------------~~----i~~ii~~~~~------~p~~~~~rvviIDE~~~L~~ 513 (1342)
....|+.+++..... . +. .+..+..... ........+++|||++.|+.
T Consensus 209 ---------~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~ 279 (615)
T TIGR02903 209 ---------EDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP 279 (615)
T ss_pred ---------CCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH
Confidence 001233333221100 0 00 0111111000 00011234999999999999
Q ss_pred HHHHHHHHhhcCC----------------------------CCcEEEEEEeC-CCCCChHHHhccEEEEEEcCCCHHHHH
Q psy13354 514 HAFNAMLKTLEEP----------------------------PKYIKFILATT-EPQKIPITVLSRCIQFNLKKMLHHDIV 564 (1342)
Q Consensus 514 ~~~~~Ll~~Le~p----------------------------~~~~vlIl~t~-~~~kl~~~L~sR~~~i~~~~l~~~el~ 564 (1342)
..++.|++++++. +..+++|.+++ .+..+.++|++||..+.|.+++.+++.
T Consensus 280 ~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~ 359 (615)
T TIGR02903 280 LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHH
Confidence 9999999999752 12345555554 456788899999999999999999999
Q ss_pred HHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc--------C--C--CCCHHHHHHHhccCc
Q psy13354 565 NNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS--------S--E--KITLNSMQEMLSIID 625 (1342)
Q Consensus 565 ~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~--------~--~--~It~e~V~~~v~~~~ 625 (1342)
.++.+.+.+.++.+++++++.|++++. +.|++++.|+.+..+. . . .|+.++|+++++...
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 999999999898999999999999865 6699999887765442 1 1 378888888887643
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.3e-13 Score=156.82 Aligned_cols=250 Identities=18% Similarity=0.134 Sum_probs=166.9
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++....|++ .++.+.+.+.+++++ ||+.|+..++.++++|||+|+++...|+++.... ..+...|+.+..+
T Consensus 62 gnPt~~~Le~----~la~le~~~~~v~~s-SG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~v-- 134 (395)
T PRK05967 62 GTPTTDALCK----AIDALEGSAGTILVP-SGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYY-- 134 (395)
T ss_pred CChHHHHHHH----HHHHHhCCCCEEEEC-cHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEe--
Confidence 3454445555 888888877788877 8999999999999999999998887776654433 3456667754444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Di 222 (1342)
+.+ +.+.++++++++ +++|++..+++| ...|+++|+++|+++|+++|+|++++...+ ..+++. +|+
T Consensus 135 d~~-----~~e~l~~al~~~-TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~-----~~pl~~GaDi 203 (395)
T PRK05967 135 DPE-----IGAGIAKLMRPN-TKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLY-----FRPLDFGVDI 203 (395)
T ss_pred CCC-----CHHHHHHhcCcC-ceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCcee-----cChhHcCCCE
Confidence 432 457788888764 566666655555 445999999999999999999999875433 335553 899
Q ss_pred EEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++.|.+|+++|-. +|+++.+++..+.+..... ..|...+|..+.+ . ..-+ +-+..+.++..+++..+.+.|
T Consensus 204 vv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~--~~G~~~~p~da~l--~-~rgl-~Tl~lR~~~~~~na~~lA~~L 277 (395)
T PRK05967 204 SIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHG--TLGLCAGPDDTYQ--I-LRGL-RTMGIRLEHHRKSALEIARWL 277 (395)
T ss_pred EEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHH--HcCCCCCHHHHHH--H-HcCc-ccHHHHHHHHHHHHHHHHHHH
Confidence 9999999995533 2888877766555543212 2344444444332 2 2222 256667889999999999999
Q ss_pred HhCC-c-EEeeCC---------------CCCeEEEEEccCC-CCCHHHHHHHHHHCCce
Q psy13354 300 DQRG-I-RIVSGG---------------TKSHIILVDLRNK-KITGKIAESILESANII 340 (1342)
Q Consensus 300 ~~~g-~-~~~~~~---------------~~~~~v~i~~~~~-~~~~~~~~~ll~~~GI~ 340 (1342)
++.. + .+..++ ..+.++.+.++.. ..+.+.+.++++.-.+.
T Consensus 278 ~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l~ 336 (395)
T PRK05967 278 EGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIF 336 (395)
T ss_pred HhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCcc
Confidence 9853 3 222221 1234666777532 11346667777765543
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-12 Score=152.82 Aligned_cols=311 Identities=15% Similarity=0.124 Sum_probs=197.9
Q ss_pred eeecCCCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHH
Q psy13354 32 LIASENYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 32 l~a~~n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~ 107 (1342)
+.||+.-.-|. ..+++.+.+.... ...+...++.+++.+.++++++.+ .++++++|||.++++++.
T Consensus 7 f~~gp~~~~~~~~~~~~~~~~~~~~----------HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~ 76 (374)
T TIGR01365 7 FSSGPCAKRPGWSIEELKNAPLGRS----------HRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALW 76 (374)
T ss_pred cCCCccCCCchhhHHHHhhhhcccC----------cCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHH
Confidence 56666666666 6666655443211 123445577777888999999974 356778899999999999
Q ss_pred Hcc-CCCCEEEEeeccCCccchhh-HHhhhCCce-eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC-CCCCcccCH
Q psy13354 108 SVL-NPGDTIMGMSLQEGGHLTHG-MMLNMSGKW-FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA-SAYSQYIDF 183 (1342)
Q Consensus 108 al~-~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~-~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~-s~~~~~~~l 183 (1342)
.++ .+||.|++.. .++.+ .. ...+..|.. +..+..+ ....+|+++++. ...+.++++ +..+...|+
T Consensus 77 nl~~~~g~~vLv~g-~FG~r--~~~eia~~~g~~~v~~l~~~--~g~~~~~~~ve~-----~~~v~~vhnETSTGv~npv 146 (374)
T TIGR01365 77 SMLGCRGVDVLAWE-SFGKG--WVTDVTKQLKLPDVRVLEAE--YGKLPDLKKVDF-----KNDVVFTWNGTTSGVRVPN 146 (374)
T ss_pred HcCCCCCCeEEEEC-HHHHH--HHHHHHHhcCCCCcEEEcCC--CCCCCCHHHcCC-----CCCEEEecCCCchheeccc
Confidence 998 5899988643 22222 12 455667773 5566433 444578988873 133444433 444455577
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---------
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--------- 253 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--------- 253 (1342)
++++..+ +++++|+|.+.++|...- ..+.+|++++|.+|++++|+| |+++.++...+......
T Consensus 147 ~~i~~~~--~~~lliVDavSs~g~~~l-----~~d~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~ 219 (374)
T TIGR01365 147 GDFIPAD--REGLTICDATSAAFAQDL-----DYHKLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIF 219 (374)
T ss_pred ccccccc--CCCcEEEEccchhcCCCC-----ChhHCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhh
Confidence 6655322 589999999988876511 122379999999999988999 89999987665544210
Q ss_pred -------------CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCC-cEEeeC--CCCCe-E
Q psy13354 254 -------------FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRG-IRIVSG--GTKSH-I 315 (1342)
Q Consensus 254 -------------~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~--~~~~~-~ 315 (1342)
...+..+|+.....++..++..+.++ +++.+.+++.++++.+++++++.| +.+... ...++ .
T Consensus 220 ~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tv 299 (374)
T TIGR01365 220 RLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTS 299 (374)
T ss_pred ccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCe
Confidence 01122233333444444445544454 799999999999999999999999 666542 11233 3
Q ss_pred EEEEccCCCC-----C-----HHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 316 ILVDLRNKKI-----T-----GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 316 v~i~~~~~~~-----~-----~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
+.+.++.... + ...+...++++||.+.++..+..+ ..+|++..... +.+|+..+
T Consensus 300 t~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~------~~fRIg~~G~i----~~~di~~l 363 (374)
T TIGR01365 300 VCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAP------SGLRIWCGATV----EKSDLECL 363 (374)
T ss_pred EEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccccCC------CceEEecCCcC----CHHHHHHH
Confidence 4455544321 1 344666666679999876554332 35999887764 44555443
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.1e-13 Score=160.05 Aligned_cols=293 Identities=16% Similarity=0.141 Sum_probs=173.7
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHccCCC-CEE
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVLNPG-DTI 116 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~~pG-D~V 116 (1342)
.|.+.+++.+.+.. +.. .. ..|.. ... .++.++++++++.+ +.+++++||++|+..+++.+..+| +.|
T Consensus 61 ~p~v~~ai~~~~~~-~~~--~~-~~~~~-~~~----~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~i 131 (398)
T PRK03244 61 HPAVVEAVTRQLAT-LGH--VS-NLFAT-EPQ----IALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTKI 131 (398)
T ss_pred CHHHHHHHHHHHHh-ccC--cc-CccCC-HHH----HHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeE
Confidence 35588888888753 321 11 12222 212 34555888888754 456666699999999999776666 355
Q ss_pred EEeeccCCccchhhHHhhhCCce----------eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC--
Q psy13354 117 MGMSLQEGGHLTHGMMLNMSGKW----------FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID-- 182 (1342)
Q Consensus 117 lv~~~~~~~~~s~~~~~~~~g~~----------~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~-- 182 (1342)
+.....+.++..... ...|.. ..+..++. .|++.+++.+.+ +.++|++.+..++ ...+
T Consensus 132 i~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~-~~~aviiep~~~~~G~~~~~~ 203 (398)
T PRK03244 132 VAAEGGFHGRTMGAL--ALTGQPAKRAPFEPLPGGVEHVPY-----GDVDALAAAVDD-DTAAVFLEPIQGEAGVVPPPA 203 (398)
T ss_pred EEECCCcCCccHHHH--hccCCcccccCCCCCCCCceEeCC-----CCHHHHHHhhcC-CeEEEEEecccCCCCCcCCCH
Confidence 554444443322211 111110 11222232 278999988853 5666777665444 2222
Q ss_pred --HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCCC-eeEEEEechhHHHHhhccCCc
Q psy13354 183 --FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGPR-GGFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 183 --l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp~-GG~iv~~~~l~~~l~~~~~~~ 256 (1342)
+++|.++|++||+++|+||+|. |....+... .... ..|++ +++|+++++. -|++++++++++.+.......
T Consensus 204 ~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pDi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~ 280 (398)
T PRK03244 204 GYLAAAREITDRHGALLVLDEVQT-GIGRTGAWFAHQHDGVTPDVV--TLAKGLGGGLPIGACLAFGPAADLLTPGLHGS 280 (398)
T ss_pred HHHHHHHHHHHHcCCEEEEecccc-CCcccchHHhhhhhCCCCCEE--EEchhhhCCcccEEEEEcHHHHhhccCCCCcC
Confidence 8999999999999999999986 221112111 1111 25765 5679994322 289999998888876533333
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee-CCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS-GGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
.++. ++...+++.+.++.+.+ .+..+++.+..+++.+.|++.+++... ....+.++|+.++.. ....+...+++
T Consensus 281 t~~~--~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~~~~i~~~~~-~~~~~~~~l~~ 355 (398)
T PRK03244 281 TFGG--NPVACAAALAVLDTIAS--EGLLENAERLGEQLRAGIEALGHPLVDHVRGRGLLLGIVLTAP-VAKAVEAAARE 355 (398)
T ss_pred CCCC--CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhcCCCceeeEeeccEEEEEEEecc-HHHHHHHHHHH
Confidence 4433 34445555555554321 235677888889999999886543221 113567888887532 23455555555
Q ss_pred HCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+||.+.+.. ...+|++++..++
T Consensus 356 -~Gv~~~~~~----------~~~iR~~p~~~~t 377 (398)
T PRK03244 356 -AGFLVNAVA----------PDVIRLAPPLIIT 377 (398)
T ss_pred -CCeEEeecC----------CCEEEEECCCcCC
Confidence 599998631 2469999887655
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-12 Score=157.62 Aligned_cols=296 Identities=16% Similarity=0.113 Sum_probs=173.2
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC--------
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN-------- 111 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~-------- 111 (1342)
.|.+.+++.+.+. .+.... ..+ ..+...++++ .+++++|.+.+++++ ||++|++.++..+..
T Consensus 59 ~~~i~~a~~~~~~-~~~~~~---~~~-~~~~~~~l~~----~l~~~~~~~~~~~~~-SGs~A~e~al~~a~~~~~~~~g~ 128 (401)
T PRK00854 59 HPKILAAMVEQAG-RLTLTS---RAF-RNDQLAPLYE----ELAALTGSHKVLPMN-SGAEAVETAIKAVRKWGYEVKGV 128 (401)
T ss_pred CHHHHHHHHHHHh-hccccc---ccc-CCHHHHHHHH----HHHhhCCCCEEEEeC-CcHHHHHHHHHHHHHHHHhccCC
Confidence 6779999888885 332221 111 2233444444 888888877666655 999999999998842
Q ss_pred -CC-CEEEEeeccCCccchhhHHhhhC-------C-ceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c-
Q psy13354 112 -PG-DTIMGMSLQEGGHLTHGMMLNMS-------G-KWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q- 179 (1342)
Q Consensus 112 -pG-D~Vlv~~~~~~~~~s~~~~~~~~-------g-~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~- 179 (1342)
+| ++|++....+.+.......+... + ....+..++.. |++++++.+.+ +.++|++.++.++ +
T Consensus 129 ~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~i~~-~~~aii~e~~~~~~G~ 202 (401)
T PRK00854 129 PEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFG-----DAEALEAAITP-NTVAFLVEPIQGEAGV 202 (401)
T ss_pred CCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCC-CeEEEEEccccCCCCC
Confidence 23 67777654443332111111100 0 00112222332 88999998875 4566666554444 2
Q ss_pred cc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCCC--eeEEEEechhHHHHh
Q psy13354 180 YI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGPR--GGFILMKKKYKKIIN 250 (1342)
Q Consensus 180 ~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp~--GG~iv~~~~l~~~l~ 250 (1342)
.. .+++|+++|++||+++|+||+|. |....+... .... .+|+++. +|++++.. .|++++++++++.+.
T Consensus 203 ~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g~g~~g~~~~~~~~g~~~D~~~~--~K~l~gg~~~ig~v~~~~~~~~~l~ 279 (401)
T PRK00854 203 IIPPAGYFTRVRELCTANNVTLILDEIQT-GLGRTGKLLAEEHEGIEADVTLI--GKALSGGFYPVSAVLSNSEVLGVLK 279 (401)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCchHhHHhhcCCCCCEEEe--cccccCCccCeEEEEEcHHHHhccc
Confidence 22 39999999999999999999996 322222111 0111 2587776 49995542 489999999888776
Q ss_pred hccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee-CCCCCeEEEEEccC-CCCCHH
Q psy13354 251 SAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS-GGTKSHIILVDLRN-KKITGK 328 (1342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~~~~~~v~i~~~~-~~~~~~ 328 (1342)
.......+++ ++..++++.+.++.+.+ ....++++++.+++.+.|++.+..... ....+.++.+.+.. .....+
T Consensus 280 ~~~~~~t~~~--~~~~~aa~~a~L~~l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~~~i~~~~~~~~~~~ 355 (401)
T PRK00854 280 PGQHGSTFGG--NPLACAVARAALKVLTE--EGMIENAAEMGAYFLEGLRSIRSNIVREVRGRGLMLAVELEPEAGGARQ 355 (401)
T ss_pred CCCCCCCCCc--CHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHhhccCceEEEeccceEEEEEEecCchhHHH
Confidence 5333333333 33444444444444331 235678888899999999886543221 11234445454432 222345
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+...+++ +||.+.+. . .+++|++++..++.
T Consensus 356 ~~~~L~~-~GV~v~~~-------~---~~~lR~~p~~~~t~ 385 (401)
T PRK00854 356 YCEALKE-RGLLAKDT-------H---DHTIRLAPPLVITR 385 (401)
T ss_pred HHHHHHH-CCeEEecC-------C---CCEEEEeCCcccCH
Confidence 6666665 59998632 1 24799998766553
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-12 Score=155.24 Aligned_cols=309 Identities=10% Similarity=0.033 Sum_probs=186.1
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceE-ecCCHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANV-QPHSGSQANQAVF 106 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi-~~~sGs~A~~~al 106 (1342)
-.+.+|+..+++.+.+++..........+ ...+...++.+.+++.++++++.+ +.++ +++|||.+++.++
T Consensus 5 ~~f~pGP~~~~~~v~~a~~~~~~~~~~~~-------hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~ 77 (361)
T TIGR01366 5 GRFGSGPSKVRLEQLQALTTTAASLFGTS-------HRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAAT 77 (361)
T ss_pred CcccCCCcCCCHHHHHHHHhcCccccccC-------cCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHH
Confidence 34778999999999999764311011001 112333466667899999999984 3444 4667999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEE-EEcCCCCC-cccCHH
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLI-IAGASAYS-QYIDFE 184 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~li-v~~~s~~~-~~~~l~ 184 (1342)
.+++.+ +.+++....++..+.........+..+..+..+ +...++. .+.+ ++++| +++.++.+ ...|++
T Consensus 78 ~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~-----~~~~-~~~lV~~~h~et~tG~~~pi~ 148 (361)
T TIGR01366 78 FGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTAD--PGSAPEP-----QADP-GVDVIAWAHNETSTGVAVPVR 148 (361)
T ss_pred Hhcccc-cccEEecCHHHHHHHHHHHhhhccCCceEEecC--CCCCCCC-----ccCC-CCCEEEEcccCCccceecccc
Confidence 999743 333333333333332221111112234555443 2233333 2233 34444 44444444 444888
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC---------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF--------- 254 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~--------- 254 (1342)
+| ++++|+++++|+++++|...- .++.+|++++|.+|+++++.| ++++.+++..+.+.....
T Consensus 149 ~I---~~~~g~~~iVDavqs~g~~~i-----dv~~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~ 220 (361)
T TIGR01366 149 RP---EGSDDALVVIDATSGAGGLPV-----DIAETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFL 220 (361)
T ss_pred cc---cccCCCeEEEEcCccccCCCC-----CHHHCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhh
Confidence 77 588999999999999887611 112379999999999955555 666678877666542111
Q ss_pred -----------CccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCC--CCeE-EEE
Q psy13354 255 -----------PGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRG-IRIVSGGT--KSHI-ILV 318 (1342)
Q Consensus 255 -----------~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~--~~~~-v~i 318 (1342)
....+++......++..++..+... +++...++..+.++++++.+.+.+ ++++.... .... ..+
T Consensus 221 d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v 300 (361)
T TIGR01366 221 SLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTI 300 (361)
T ss_pred hHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEE
Confidence 1223455555555777777766655 478888999999999999999987 45443111 1222 334
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.++ .+.+.+.+...|+++||.+.+.... +....+|+|...++|.
T Consensus 301 ~~~-~g~~~~~v~~~L~~~gI~i~~~~~~------l~~~~vRis~~~~~t~ 344 (361)
T TIGR01366 301 DFV-DDIDAATVAKILRANGIVDTEPYRK------LGRNQLRVAMFPAIDP 344 (361)
T ss_pred ECC-CccCHHHHHHHHHHCCCeeccCccc------cCCCcEEEEcCCCCCH
Confidence 444 3345555555556679998643211 1234699999998774
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-12 Score=161.36 Aligned_cols=223 Identities=14% Similarity=0.142 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CC--
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KK-- 150 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~-- 150 (1342)
..++.+..++.||++++.+.++|+|.+|.+++++++++||.|+ +...+|.|....+...|. .++++... +.
T Consensus 207 I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vl---v~RN~HKSv~~al~L~ga--~Pvyl~P~~~~~Gi 281 (755)
T PRK15029 207 FGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVV---VDRNCHKSIEQGLILTGA--KPVYMVPSRNRYGI 281 (755)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEE---eecccHHHHHHHHHHcCC--eEEEecccccccCC
Confidence 3446669999999999999996777799999999999999999 555889998888888888 44444322 21
Q ss_pred -CCCC-----HHHHHHHHHhcC---------CeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC
Q psy13354 151 -EKID-----YKKVEYLAKKNK---------PKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP 214 (1342)
Q Consensus 151 -~~id-----~e~Le~~i~~~~---------~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~ 214 (1342)
+.++ ++.+++++.++. |..+++++|+|- ...++++|+++|+++|++|++||||++-+.....++
T Consensus 282 ~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p 361 (755)
T PRK15029 282 IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYA 361 (755)
T ss_pred ccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECccccccccCcccc
Confidence 2344 899999886532 224555555555 555999999999999999999999975432222222
Q ss_pred --CCC-------CCCc-EEEecCCccCCCCCe-eEEEEech--h--HHHHhhccCCccccCCcHHHHHHHHHHHHHhccc
Q psy13354 215 --NPV-------PFAD-FITSTTHKSLRGPRG-GFILMKKK--Y--KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKP 279 (1342)
Q Consensus 215 --~~l-------~~~D-ivv~S~sK~l~gp~G-G~iv~~~~--l--~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~ 279 (1342)
+++ ..+| +++.|.||++++.+. +++-.+.. . .+.++.....+.+++|..+.++++-.+...+...
T Consensus 362 ~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~ 441 (755)
T PRK15029 362 DHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGN 441 (755)
T ss_pred ccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhh
Confidence 223 2477 999999999988777 56655433 1 2345543334444556666666665554444322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 280 DFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 280 ~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
..+...++..+.+..+++.+.+.
T Consensus 442 ~G~~l~~~~i~~~~~~r~~l~~~ 464 (755)
T PRK15029 442 SGLSLTQEVIDEAVDFRQAMARL 464 (755)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Confidence 45556777778888888888654
|
|
| >KOG0634|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=147.75 Aligned_cols=292 Identities=13% Similarity=0.075 Sum_probs=191.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhC----C----CCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhh
Q psy13354 64 YYGGCKFIDLIEKIAINRLKKIFN----A----EAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNM 135 (1342)
Q Consensus 64 ~~~~~~~~~~Le~~~~~~la~~~g----~----~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~ 135 (1342)
.|+.+.+..+|.. .+.++.+ . +..++.+++.++|++.+++.++++||+|++-..++++. ...++.
T Consensus 95 QYg~s~G~peLl~----fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~A---L~s~~a 167 (472)
T KOG0634|consen 95 QYGQSSGIPELLL----FIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSA---LQSMEA 167 (472)
T ss_pred ccccccCcHHHHH----HHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHH---HHhccc
Confidence 3567777888888 5555655 1 24566665888899999999999999999766554433 333345
Q ss_pred CCceeEEEEecCCCCCCCCHHHHHHHHHhc--------CCeEEEEcC-CCCC-----cccCHHHHHHHHHHcCCEEEEEc
Q psy13354 136 SGKWFNSICYGLNKKEKIDYKKVEYLAKKN--------KPKLIIAGA-SAYS-----QYIDFERFYHIAKNINSYFMVDM 201 (1342)
Q Consensus 136 ~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--------~~~liv~~~-s~~~-----~~~~l~~I~~la~~~gi~LIvDe 201 (1342)
.|+ .+++++.|++| +++|.+++.+..- +|.+++.-+ +.|| ...--++|.++|++|+++||+||
T Consensus 168 ~gv--~~ipv~md~~G-i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDd 244 (472)
T KOG0634|consen 168 LGV--KIIPVKMDQDG-IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDD 244 (472)
T ss_pred cCc--eEEeccccCCC-CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecC
Confidence 554 88888887766 8999999977632 367877755 2333 33357899999999999999999
Q ss_pred ccchhhhhc---C-----C-----------CCCCCCC----CcEEEecCCccCCCCCe--eEEEEechhHHHHhhccCCc
Q psy13354 202 AHYAGLIAA---G-----E-----------YPNPVPF----ADFITSTTHKSLRGPRG--GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 202 a~~~g~~~~---~-----~-----------~~~~l~~----~Divv~S~sK~l~gp~G--G~iv~~~~l~~~l~~~~~~~ 256 (1342)
.|.+..+.. . . .++.+.. ..+-..||||-+ +|.- ||+.+++-+++.+-......
T Consensus 245 pYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKii-aPGlRlG~it~~~~~l~ril~~ae~~ 323 (472)
T KOG0634|consen 245 PYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKII-APGLRLGWITGNSLFLKRILDLAEVA 323 (472)
T ss_pred ccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhh-cCcceeEEeecCHHHHHHHhhhccee
Confidence 988655542 0 0 1111110 124467999999 5433 99999997776665433222
Q ss_pred cccCCcHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHhC---C-cEEeeCCCCCeEEEEEcc-------
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLK----PDFKIYQKQVVKNAKILSKILDQR---G-IRIVSGGTKSHIILVDLR------- 321 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~----~~~~~~~~~l~~~a~~l~~~L~~~---g-~~~~~~~~~~~~v~i~~~------- 321 (1342)
+.+ |....+.-+.+-+..... +|+.+++..+..++..+..+|.+. + +++ .+|.++.++||.++
T Consensus 324 t~~-pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~-~~P~aGmFiwv~i~~~~~~~~ 401 (472)
T KOG0634|consen 324 TSG-PSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEY-HPPKAGMFIWVEIPYINFDTK 401 (472)
T ss_pred ecC-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEE-ecCCcceEEEEEecccccccc
Confidence 222 222222222222222222 367788888889999999988872 3 333 35788999999996
Q ss_pred CCCC-CHHHHHHHHHHCCceeeeccCCCCCCCccc-ccccccccccccc
Q psy13354 322 NKKI-TGKIAESILESANIICNKNSIPNDPEKPYF-TSGIRLGSSAITT 368 (1342)
Q Consensus 322 ~~~~-~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~-~~~lRi~~~~~~t 368 (1342)
.... -.+.....+.++||.+.++.++.+...... ..++|++++....
T Consensus 402 ~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~ 450 (472)
T KOG0634|consen 402 KSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEP 450 (472)
T ss_pred cchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCH
Confidence 2221 246677777788999998877665432221 2379999887644
|
|
| >KOG0633|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=137.93 Aligned_cols=254 Identities=15% Similarity=0.156 Sum_probs=177.0
Q ss_pred CHHHHHHHHHHHccCCC-CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-CCeEEEEcC
Q psy13354 97 SGSQANQAVFFSVLNPG-DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-KPKLIIAGA 174 (1342)
Q Consensus 97 sGs~A~~~al~al~~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-~~~liv~~~ 174 (1342)
++-+.+..+++..+.|| ++|+..+++++.+..-+ ...++ .++.++.+.+|.++.|.+.+.+... .+++++++.
T Consensus 94 GsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A---~iNd~--eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tS 168 (375)
T KOG0633|consen 94 GSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDA---AINDA--EVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTS 168 (375)
T ss_pred CcHHHHHHHHhheecCCccceeecCCcceeEEEEe---ecCCc--eEEEecCCCCccccHHHHHHHHhccccceEEEEcC
Confidence 44458889999999999 78888777776653222 34555 6677788889999999999988765 678888888
Q ss_pred CCCC--cccCHHHHHHHHHHc-CCEEEEEcccchhhhhcCCCCCCCCCC-cEEEecCCccCCCCCe---eEEEEechhHH
Q psy13354 175 SAYS--QYIDFERFYHIAKNI-NSYFMVDMAHYAGLIAAGEYPNPVPFA-DFITSTTHKSLRGPRG---GFILMKKKYKK 247 (1342)
Q Consensus 175 s~~~--~~~~l~~I~~la~~~-gi~LIvDea~~~g~~~~~~~~~~l~~~-Divv~S~sK~l~gp~G---G~iv~~~~l~~ 247 (1342)
|++| .....+.|.++.+-- +.++++||||..+.-........-... -++..++||.| |..| |+.+.+.++++
T Consensus 169 PgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsf-GLAGiRvG~~~~~~~ia~ 247 (375)
T KOG0633|consen 169 PGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSF-GLAGIRVGYGAFPLSIAE 247 (375)
T ss_pred CCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhc-CcceeEeecccccHHHHH
Confidence 7777 233555666655543 689999999864322111111111122 35678999999 8888 99999999999
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCCeEEEEEccC--CC
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKSHIILVDLRN--KK 324 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~~~v~i~~~~--~~ 324 (1342)
.++....+++.+.+ ...++..|+.+.....++.+++.+.+.+.++...|.+.. +.-+.++.+.+|+.+.+.+ .+
T Consensus 248 iln~~KaPYNiS~~---~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~n~ 324 (375)
T KOG0633|consen 248 ILNRAKAPYNISVA---GSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGGDNG 324 (375)
T ss_pred HHHhccCCccccch---hHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcCCCcH
Confidence 99998889987753 233333344433334788889999999999999998853 3333456778888888864 33
Q ss_pred CCHHHHHHHHHHCCceeeec-cCCCCCCCccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKN-SIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~-~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.....+++.+.||+|+-. .-++ ..+++|++++.
T Consensus 325 ~akkly~q~at~~gVvVRfrgse~~------c~G~lRitvGt 360 (375)
T KOG0633|consen 325 MAKKLYKQDATKMGVVVRFRGSEEG------CKGYLRITVGT 360 (375)
T ss_pred HHHHHHHHHHHhcceEEEEcCCccc------cceeEEEEcCC
Confidence 45677788888899999843 1222 25678987654
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-12 Score=150.55 Aligned_cols=251 Identities=19% Similarity=0.205 Sum_probs=168.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCC--------CceEecCCHHHHHHHHHHHccC--------C-----CCEEEEeeccC
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAE--------AANVQPHSGSQANQAVFFSVLN--------P-----GDTIMGMSLQE 123 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~--------~~vi~~~sGs~A~~~al~al~~--------p-----GD~Vlv~~~~~ 123 (1342)
+...+...++|.++.+++++++|.+ ..-++++|||+|+..++.+.-. . +..+++.+ .
T Consensus 71 ~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s--~ 148 (373)
T PF00282_consen 71 WEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVS--E 148 (373)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEE--T
T ss_pred cccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccc--c
Confidence 3456778899999999999999988 2345556999999988865521 1 23344322 2
Q ss_pred CccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCE
Q psy13354 124 GGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--QYIDFERFYHIAKNINSY 196 (1342)
Q Consensus 124 ~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~ 196 (1342)
.+|++..+++...|.+ ++.++.++++++|+++|++++.+. .|.+|+.+.+.+. ...|+++|+++|+++++|
T Consensus 149 ~aH~S~~Kaa~~lGlg--~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~w 226 (373)
T PF00282_consen 149 QAHYSIEKAARILGLG--VRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIW 226 (373)
T ss_dssp TS-THHHHHHHHTTSE--EEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-E
T ss_pred ccccHHHHhcceeeeE--EEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhcccccee
Confidence 4678888889999997 455577788999999999987643 2434444443333 666999999999999999
Q ss_pred EEEEcccchhhhhcCCCC---CCCCCCcEEEecCCccCCCCCe-eEEEEech-hHHHHhhccCCc---------------
Q psy13354 197 FMVDMAHYAGLIAAGEYP---NPVPFADFITSTTHKSLRGPRG-GFILMKKK-YKKIINSAVFPG--------------- 256 (1342)
Q Consensus 197 LIvDea~~~g~~~~~~~~---~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~-l~~~l~~~~~~~--------------- 256 (1342)
++||+|++...+....+. .-++.+|.++.++|||+..|.+ |+++.++. ...........+
T Consensus 227 lHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~ 306 (373)
T PF00282_consen 227 LHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYG 306 (373)
T ss_dssp EEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEE
T ss_pred eeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccc
Confidence 999999875433222211 1233579999999999988888 88887763 222211000111
Q ss_pred --cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCCeEEEEEc
Q psy13354 257 --IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 257 --~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~~~v~i~~ 320 (1342)
...++.......+...++....+++.+..++..++++++.+.|.+.+ +++.. ++...++.+++
T Consensus 307 ~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~-~~~~~~vcFr~ 372 (373)
T PF00282_consen 307 DYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVN-EPDLNIVCFRY 372 (373)
T ss_dssp EGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS-TTSSSEEEEEE
T ss_pred cccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEc-CCCceEEEEEe
Confidence 11223334455667677777777899999999999999999999964 78765 44556666654
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-12 Score=161.11 Aligned_cols=285 Identities=15% Similarity=0.177 Sum_probs=176.8
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC-------C-CCEEEEeeccCCccchhhHHhhhCCce
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN-------P-GDTIMGMSLQEGGHLTHGMMLNMSGKW 139 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~-------p-GD~Vlv~~~~~~~~~s~~~~~~~~g~~ 139 (1342)
..++.++..++.+++++++|.+.+.+.+++|+.|..++++++-. + .++|+++...|+.+... +...|.
T Consensus 538 sQG~lq~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas---a~~~Gi- 613 (954)
T PRK12566 538 AEGYRAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS---AQMAGM- 613 (954)
T ss_pred hcCHHHHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH---HHHCCC-
Confidence 45566666677789999999999999998999999888877632 2 35677777666555433 344555
Q ss_pred eEEEEecCCCCCCCCHHHHHHHHHhcCC--eEEEE-cCCCCCcc-cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC
Q psy13354 140 FNSICYGLNKKEKIDYKKVEYLAKKNKP--KLIIA-GASAYSQY-IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN 215 (1342)
Q Consensus 140 ~~~v~~~~~~~~~id~e~Le~~i~~~~~--~liv~-~~s~~~~~-~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~ 215 (1342)
+++.++.+++|.+|+++|++++.+.++ +.|++ ++++.... .++++|+++||++|+++++|++|..+... ...
T Consensus 614 -eVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~---l~~ 689 (954)
T PRK12566 614 -RVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVG---LAR 689 (954)
T ss_pred -EEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccC---CCC
Confidence 666667778899999999999974333 33333 34444433 36999999999999999999999754441 111
Q ss_pred CCC-CCcEEEecCCccCCCCCe------eEEEEechhHHHHhhcc-------CC--ccc--cCCcHHHHHHHHHHHHHhc
Q psy13354 216 PVP-FADFITSTTHKSLRGPRG------GFILMKKKYKKIINSAV-------FP--GIQ--GGPLMHVIAAKAVAFKEVL 277 (1342)
Q Consensus 216 ~l~-~~Divv~S~sK~l~gp~G------G~iv~~~~l~~~l~~~~-------~~--~~~--~~~~~~~~~Aaa~al~~~l 277 (1342)
+.+ .+|++++++||||++|.| |.+...+.+...+.... .+ ... .+.++...+-.+......+
T Consensus 690 Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~l 769 (954)
T PRK12566 690 PADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMM 769 (954)
T ss_pred hhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHH
Confidence 222 379999999999987766 44444454444444211 00 001 1111111222233333333
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC-C--eEEEEEccCC-----CCCHHHHHHHHHHCCceeeeccCCCC
Q psy13354 278 KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK-S--HIILVDLRNK-----KITGKIAESILESANIICNKNSIPND 349 (1342)
Q Consensus 278 ~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~-~--~~v~i~~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~ 349 (1342)
...+.+.......+++|+.+.|.+ ++.+...+.+ . +-+.+++... ....++..+|+ ++||......+|.
T Consensus 770 G~eLk~aa~~ailnAnYla~rL~~-~~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~-d~Gihapt~~fPv- 846 (954)
T PRK12566 770 GPQLADASEVAILSANYLANQLGG-AFPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLM-DYGFHAPTMSFPV- 846 (954)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHh-hCCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHH-HCCcEEeEEeecc-
Confidence 222444444457789999999977 4444332211 1 3333444321 22346777777 6799987755553
Q ss_pred CCCccccccccccccccccc
Q psy13354 350 PEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 350 ~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+.+|++.+..++.
T Consensus 847 ------~~~LmIepTE~esk 860 (954)
T PRK12566 847 ------PGTLMVEPTESESK 860 (954)
T ss_pred ------CCEEEEEeeeeCCH
Confidence 24699998887664
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-13 Score=160.49 Aligned_cols=207 Identities=17% Similarity=0.160 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCC
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKI 153 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~i 153 (1342)
.+++.++++++.|.+.+++++ +|++|+..++ .++++||+|+++...|+++.... ..+...|+ .+..++..
T Consensus 135 ~~aLE~~lA~leg~e~ai~~~-SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~--~v~~vd~~----- 205 (464)
T PLN02509 135 RDALESLLAKLDKADRAFCFT-SGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV--VVKRVNTT----- 205 (464)
T ss_pred HHHHHHHHHHHhCCCEEEEeC-cHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCe--EEEEeCCC-----
Confidence 344445999999988887777 9998886555 57899999998877776554332 23345566 44444432
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCcc
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKS 230 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~ 230 (1342)
|++++++++++. .++|+++.++++ ...|+++|+++|++||++||+|++|+.+.... ++. .+|++++|++|+
T Consensus 206 d~e~l~~ai~~~-TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~-----pl~~gaDivv~S~tK~ 279 (464)
T PLN02509 206 NLDEVAAAIGPQ-TKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSR-----PLELGADIVMHSATKF 279 (464)
T ss_pred CHHHHHHhCCcC-CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCC-----hhhcCCcEEEecCccc
Confidence 789999888754 466666665555 44599999999999999999999987765421 222 479999999999
Q ss_pred CCCCC---eeEEEEech-hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 231 LRGPR---GGFILMKKK-YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 231 l~gp~---GG~iv~~~~-l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
++|+. ||+++++++ +.+.++..... .++...|..+++....++ .+..+.++..+++.++.+.|++.
T Consensus 280 l~G~gdv~gG~v~~~~~~l~~~~~~~~~~--~g~~l~p~~A~l~lr~L~----tL~~R~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 280 IAGHSDVMAGVLAVKGEKLAKEVYFLQNS--EGSGLAPFDCWLCLRGIK----TMALRIEKQQENARKIAMYLSSH 349 (464)
T ss_pred ccCCCccceeEEEeccHHHHHHHHHHHHh--cCCCcCHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHhcC
Confidence 97654 588887553 33433321111 123334444443333222 45567889999999999999875
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.8e-13 Score=160.40 Aligned_cols=214 Identities=16% Similarity=0.141 Sum_probs=145.6
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~ 146 (1342)
+++....+|+ .++++.|.+++++++ +|+.|+..++.++++|||+|+++...++++......+...|+. +..++
T Consensus 45 g~p~~~~lE~----~la~leg~~~~v~~s-sG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~--v~~v~ 117 (397)
T PRK05939 45 GTPTTAALEA----KITKMEGGVGTVCFA-TGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVE--VTMVD 117 (397)
T ss_pred CCHHHHHHHH----HHHHHhCCCeEEEeC-CHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCE--EEEEC
Confidence 4566667777 899999999988888 9999999999999999999999887787766555555666774 44445
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.. |+++++++++++ +++|+++.+++| ...|+++|+++|+++|+++|+|++|+.+.. ..+.. .+|++
T Consensus 118 ~~-----d~e~l~~~l~~~-tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~-----~~~~~~gaDiv 186 (397)
T PRK05939 118 AT-----DVQNVAAAIRPN-TRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL-----FRPKDVGASLV 186 (397)
T ss_pred CC-----CHHHHHHhCCCC-CeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc-----cCccccCCEEE
Confidence 43 899999998764 555555454444 345999999999999999999999876532 12332 47999
Q ss_pred EecCCccCCCCCe--eEEEEe-ch--------hHH-------------HHhhccCCccccCCcHHHHHHHHHHHHHhccc
Q psy13354 224 TSTTHKSLRGPRG--GFILMK-KK--------YKK-------------IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKP 279 (1342)
Q Consensus 224 v~S~sK~l~gp~G--G~iv~~-~~--------l~~-------------~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~ 279 (1342)
+.|+||+++|..+ |+++.. .. +.. .++.. .....|+...|..+. +. ..-+ +
T Consensus 187 v~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~~~p~~a~--l~-~rgl-~ 261 (397)
T PRK05939 187 INSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKK-GLRDMGATLSSEAAH--RI-AIGA-E 261 (397)
T ss_pred EecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHH-HHHhcCCCCCHHHHH--HH-HcCc-C
Confidence 9999999955332 444443 21 111 11110 001223333333332 12 2222 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 280 DFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 280 ~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
-+..+.++..+|+..+.+.|++.+
T Consensus 262 tl~~R~~~~~~na~~la~~L~~~p 285 (397)
T PRK05939 262 TLALRVDRSCSNALALAQFLEAHP 285 (397)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 566678888999999999999864
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.2e-13 Score=157.48 Aligned_cols=210 Identities=21% Similarity=0.211 Sum_probs=144.7
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~ 146 (1342)
++...++++ .+++++|.+.+++++ +|+.|+..++. ++++||+|++++..+++....+. .....|+. ++.++
T Consensus 46 ~p~~~~le~----~la~l~g~~~~l~~~-sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~--v~~vd 117 (378)
T TIGR01329 46 NPTRTALES----LLAKLDKADRAFAFS-SGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVV--VVHVD 117 (378)
T ss_pred ChHHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcE--EEEeC
Confidence 444455555 999999998887777 89999988776 78999999988777665543332 33456764 44445
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++++++++++ ++++++++.++++ ...|+++|+++|+++|+++|+|++|+.+.. ..++. .+|++
T Consensus 118 ~~-----d~~~le~~i~~-~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~-----~~~l~~g~Di~ 186 (378)
T TIGR01329 118 TT-----DLDKVKAALGP-KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL-----CNPLELGADIV 186 (378)
T ss_pred CC-----CHHHHHHhcCc-CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc-----CChhhcCCcEE
Confidence 43 89999998875 4566666655555 455999999999999999999999865533 12233 47999
Q ss_pred EecCCccCCCCC---eeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|++|+++|+. ||++++++ ++.+.++..... .+....+..+++. ...+ ..+..+.++..+++..+.+.|
T Consensus 187 v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~--~G~~~~~~~a~l~---~~~l-~tl~~R~e~~~~na~~la~~L 260 (378)
T TIGR01329 187 YHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNS--TGSGLAPFDCWLL---LRGI-KTLAIRIEKQQENARAIAMFL 260 (378)
T ss_pred EEecceeccCCccceeEEEEeCcHHHHHHHHHHHHh--cCCcCCHHHHHHH---HccC-CCHHHHHHHHHHHHHHHHHHH
Confidence 999999997754 58888855 554555543221 2222233333221 2222 356677888999999999999
Q ss_pred HhC
Q psy13354 300 DQR 302 (1342)
Q Consensus 300 ~~~ 302 (1342)
++.
T Consensus 261 ~~~ 263 (378)
T TIGR01329 261 STH 263 (378)
T ss_pred HhC
Confidence 874
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.6e-12 Score=162.40 Aligned_cols=320 Identities=16% Similarity=0.136 Sum_probs=193.6
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV 109 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al 109 (1342)
+.+.+....++|.+...+...- .+..-.|... .....+..+++.++.+++++++|.+.+.+.+++|++|..+.+.++
T Consensus 502 i~lGsct~~~~p~~~~~~~~~~--~f~~~hP~qp-~e~~qG~l~~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~ 578 (954)
T PRK05367 502 IPLGSCTMKLNAAAEMIPITWP--EFANLHPFAP-AEQAAGYRELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAI 578 (954)
T ss_pred eeCCcCCCcCCHHHHHHHHhCc--cccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHH
Confidence 5565655666666444433221 1111011000 011445678888899999999999988888867777776655444
Q ss_pred c----CCCC----EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCCCc
Q psy13354 110 L----NPGD----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAYSQ 179 (1342)
Q Consensus 110 ~----~pGD----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~~~ 179 (1342)
. .+|| +|+++...|++.. ..+...|. +++.++.+.+|.+|+++|++++.++ +...|++..+++.+
T Consensus 579 r~~~~~~G~~~r~~vlis~~aH~snp---~sa~~~G~--~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G 653 (954)
T PRK05367 579 RAYHESRGEGHRDVCLIPSSAHGTNP---ASAVMAGM--KVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHG 653 (954)
T ss_pred HHHhhccCCCCCCEEEEEchhhhhhH---HHHHHCCC--EEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCe
Confidence 2 5666 5887765554443 33455666 5566677778999999999999764 34445554444443
Q ss_pred c--cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-CCCcEEEecCCccCCCCCe------eEEEEechhHHHHh
Q psy13354 180 Y--IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-PFADFITSTTHKSLRGPRG------GFILMKKKYKKIIN 250 (1342)
Q Consensus 180 ~--~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~~~Divv~S~sK~l~gp~G------G~iv~~~~l~~~l~ 250 (1342)
. .|+++|+++||++|+++++|+||..+...-. .+. -.+|++++++||||++|.| |++.+++.+...+.
T Consensus 654 ~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~---~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lp 730 (954)
T PRK05367 654 VFEETIREICEIVHEHGGQVYLDGANMNAQVGLA---RPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLP 730 (954)
T ss_pred eecCCHHHHHHHHHHcCCEEEEECcChhhccCCC---ChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCC
Confidence 3 5899999999999999999999975544211 121 2489999999999965554 68888876555543
Q ss_pred hcc-----CCccccCCc-HH-----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC---CCCeEE
Q psy13354 251 SAV-----FPGIQGGPL-MH-----VIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG---TKSHII 316 (1342)
Q Consensus 251 ~~~-----~~~~~~~~~-~~-----~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~---~~~~~v 316 (1342)
... .....+... .+ ....++..+..+..+++++..++...+++++.+.|.+. +++.... .-.+-+
T Consensus 731 g~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~-~~~~~~~~~~~~~~e~ 809 (954)
T PRK05367 731 GHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH-YPVLYTGANGRVAHEC 809 (954)
T ss_pred CCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh-cCccccCCCCCcccce
Confidence 221 000011111 11 11112223334455577777787889999999999773 4432211 112334
Q ss_pred EEEccC---C--CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 317 LVDLRN---K--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 317 ~i~~~~---~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+++.. . ....++++++ .++|+......+|. .+.+|++.+..++.
T Consensus 810 i~~~~~~~~~~g~~~~di~krL-~d~G~~~~t~~~pv-------~~~l~i~ptE~~s~ 859 (954)
T PRK05367 810 ILDLRPLKESTGITVDDIAKRL-IDYGFHAPTMSFPV-------AGTLMVEPTESESK 859 (954)
T ss_pred EEEeecccccCCCCHHHHHHHH-HHCCCeEeecCCcc-------CCEEEEEeeecCCH
Confidence 444432 1 1234566666 55699987755543 24589988886553
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.7e-13 Score=152.07 Aligned_cols=190 Identities=16% Similarity=0.159 Sum_probs=135.4
Q ss_pred CccccccchhhHHHHHHHHH----------cC----CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 389 NFNTLIGQNHISKSLINALD----------KK----RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~----------~~----~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
.+.+++|++.+++.+.+.+. .| ..+..++|+||||||||++|+.+++.+...+...
T Consensus 21 l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~---------- 90 (287)
T CHL00181 21 LDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIK---------- 90 (287)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCC----------
Confidence 34589999999887765531 11 2334589999999999999999999875321100
Q ss_pred CCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccC---------CHHHHHHH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHML---------THHAFNAM 519 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L---------~~~~~~~L 519 (1342)
...+++++.+... ......++++.+ ...|++|||++.+ +.+.++.|
T Consensus 91 ------------~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a-------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L 151 (287)
T CHL00181 91 ------------KGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA-------MGGVLFIDEAYYLYKPDNERDYGSEAIEIL 151 (287)
T ss_pred ------------CCceEEecHHHHHHHHhccchHHHHHHHHHc-------cCCEEEEEccchhccCCCccchHHHHHHHH
Confidence 0123444322100 011233344332 2359999999986 45678899
Q ss_pred HHhhcCCCCcEEEEEEeCCCC-----CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh----
Q psy13354 520 LKTLEEPPKYIKFILATTEPQ-----KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG---- 589 (1342)
Q Consensus 520 l~~Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~---- 589 (1342)
++.+++...++++|++++... ...+.+.+|+ ..+.|++++.+++.+++...+++.+..+++++...+.+.
T Consensus 152 ~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~ 231 (287)
T CHL00181 152 LQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKR 231 (287)
T ss_pred HHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Confidence 999998878888888765321 2237899999 689999999999999999999999999999988777764
Q ss_pred ----cCCcHHHHHHHHHHHHhh
Q psy13354 590 ----AQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 590 ----~~g~lr~a~~~L~kl~~~ 607 (1342)
.-||.|.+.+.++++...
T Consensus 232 ~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 232 MEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred CCCCCCccHHHHHHHHHHHHHH
Confidence 238899999999986654
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-13 Score=158.35 Aligned_cols=210 Identities=18% Similarity=0.211 Sum_probs=144.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchh-hHHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTH-GMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~-~~~~~~~g~~~~~v~~~ 146 (1342)
++....|++ .++++.|.+.+++++ +|+.|+..++ ++++|||+|+++...+++.+.. ...+...|+ +++.++
T Consensus 49 ~p~~~~Le~----~lA~l~g~~~~~~~~-sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~--~v~~v~ 120 (377)
T PRK07671 49 NPTRAALEE----LIAVLEGGHAGFAFG-SGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGI--EHTFVD 120 (377)
T ss_pred ChHHHHHHH----HHHHHhCCCceEEeC-CHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCe--EEEEEC
Confidence 444455555 999999998887777 8998887765 5789999999888776644332 223445566 444444
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.. |++++++++++ ++++|+++.++|| ...++++|+++|+++|+++|+|++|+.+... .+.. .+|++
T Consensus 121 ~~-----d~~~l~~ai~~-~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~-----~p~~~g~Div 189 (377)
T PRK07671 121 TS-----NLEEVEEAIRP-NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQ-----SPISLGADIV 189 (377)
T ss_pred CC-----CHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccC-----ChhhhCCeEE
Confidence 33 89999998876 4567776666666 4559999999999999999999998654331 1233 46999
Q ss_pred EecCCccCCCCC---eeEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|++|+++|+. ||+++++ +++.+.++..... .++...+..+.+. +.. + ..+..+.++..+|+..+.+.|
T Consensus 190 v~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~--~g~~~~~~~a~l~--~~~-l-~tl~~R~~~~~~na~~la~~L 263 (377)
T PRK07671 190 LHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNS--TGGILGPQDSWLL--LRG-L-KTLGIRMEEHETNSRAIAEFL 263 (377)
T ss_pred EecCcccccCCccceeEEEEeCcHHHHHHHHHHHHh--hcCCCCHHHHHHH--HcC-c-ChHHHHHHHHHHHHHHHHHHH
Confidence 999999997664 4877775 4666666543222 1233333333322 221 2 245567888899999999999
Q ss_pred HhC
Q psy13354 300 DQR 302 (1342)
Q Consensus 300 ~~~ 302 (1342)
++.
T Consensus 264 ~~~ 266 (377)
T PRK07671 264 NNH 266 (377)
T ss_pred HcC
Confidence 875
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=157.14 Aligned_cols=211 Identities=18% Similarity=0.173 Sum_probs=149.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++....+++ .++++.|.+.+++++ +|+.|+..++. ++++||+|+++...|++.+..+ ..+...|+.+..+ +
T Consensus 53 ~p~~~~le~----~lA~l~g~~~~v~~~-sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v--~ 124 (390)
T PRK08064 53 NPTREALED----IIAELEGGTKGFAFA-SGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFV--D 124 (390)
T ss_pred ChhHHHHHH----HHHHHhCCCCeEEEC-CHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEE--C
Confidence 454555555 999999998877776 99999988886 7889999999888777654433 3445667744444 5
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++++++.++++ +++|+++.+++| ...|+++|.++|+++|+++|+|++|+.+... .+.+ .+|++
T Consensus 125 ~~-----d~~~l~~~l~~~-tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~-----~~~~~g~Div 193 (390)
T PRK08064 125 MT-----NLEEVAQNIKPN-TKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQ-----KPLDLGADVV 193 (390)
T ss_pred CC-----CHHHHHHhcCCC-ceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCccccc-----CchhhCCcEE
Confidence 43 788999888764 566666666655 4559999999999999999999998754331 1222 37999
Q ss_pred EecCCccCCCCCe---eEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
+.|+||+++|+.| |+++++ +++.+.++....++. ....+..+.. .. ..+. .+..+.++..+++..+.+.|
T Consensus 194 v~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g--~~~~~~~a~l--~~-~gl~-tl~~R~~~~~~~a~~la~~L 267 (390)
T PRK08064 194 LHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFG--AVLGVQDCWL--VL-RGLK-TLHVRLEHSSETANKIALYL 267 (390)
T ss_pred EeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcC--CCCCHHHHHH--HH-cccC-cHHHHHHHHHHHHHHHHHHH
Confidence 9999999977654 887775 477777766444332 2223333332 22 2222 45567888899999999999
Q ss_pred HhCC
Q psy13354 300 DQRG 303 (1342)
Q Consensus 300 ~~~g 303 (1342)
++.+
T Consensus 268 ~~~~ 271 (390)
T PRK08064 268 QEHP 271 (390)
T ss_pred hcCC
Confidence 8854
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-13 Score=144.67 Aligned_cols=185 Identities=13% Similarity=0.197 Sum_probs=131.3
Q ss_pred Ccccc-cc--chhhHHHHHHHHHc-CCCC--cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 389 NFNTL-IG--QNHISKSLINALDK-KRLH--HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 389 ~f~~l-vG--q~~~~~~L~~~l~~-~~~~--~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
+|+++ +| .+.++..+.++.+. +.-+ +.++||||+|+|||++++++++..+.
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~----------------------- 70 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA----------------------- 70 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-----------------------
Confidence 67774 34 45567777776653 2112 56899999999999999998876531
Q ss_pred ccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCC--
Q psy13354 463 DNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQ-- 540 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~-- 540 (1342)
.+.. .. . ...+ +.....+++|||+|.+.....-.+++.+.+.. . .+|++++.+.
T Consensus 71 ------~~~~--~~-~----~~~~---------~~~~~d~lliDdi~~~~~~~lf~l~N~~~e~g-~-~ilits~~~p~~ 126 (214)
T PRK06620 71 ------YIIK--DI-F----FNEE---------ILEKYNAFIIEDIENWQEPALLHIFNIINEKQ-K-YLLLTSSDKSRN 126 (214)
T ss_pred ------EEcc--hh-h----hchh---------HHhcCCEEEEeccccchHHHHHHHHHHHHhcC-C-EEEEEcCCCccc
Confidence 0110 00 0 0001 11234699999999876544444444444432 3 3455554433
Q ss_pred -CChHHHhccEE---EEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc---CCCCC
Q psy13354 541 -KIPITVLSRCI---QFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS---SEKIT 613 (1342)
Q Consensus 541 -kl~~~L~sR~~---~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~---~~~It 613 (1342)
.+ +.|+||+. ++++.+|+.+++..++++.++..|+.++++++++|++++.+|+|.+++.|+++..++ +..||
T Consensus 127 l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it 205 (214)
T PRK06620 127 FTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKIT 205 (214)
T ss_pred cch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34 89999985 999999999999999999999999999999999999999999999999999976543 34599
Q ss_pred HHHHHHHh
Q psy13354 614 LNSMQEML 621 (1342)
Q Consensus 614 ~e~V~~~v 621 (1342)
.+.+++++
T Consensus 206 ~~~~~~~l 213 (214)
T PRK06620 206 ISLVKEVL 213 (214)
T ss_pred HHHHHHHh
Confidence 99988875
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-12 Score=160.55 Aligned_cols=270 Identities=16% Similarity=0.142 Sum_probs=178.7
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--------CCCCEEEEeeccCCccchhhHHhhhCCce
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL--------NPGDTIMGMSLQEGGHLTHGMMLNMSGKW 139 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~--------~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~ 139 (1342)
..+..++..++.+++++++|.+.+.+.+++|+.|..++++++- ...++|+++...|++.... +...|.
T Consensus 525 sqG~lq~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPas---a~~~G~- 600 (939)
T TIGR00461 525 VEGYQELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPAS---AAMAGM- 600 (939)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHH---HHHCCC-
Confidence 4567788888999999999999888899888888876666552 1335788777666555433 345565
Q ss_pred eEEEEecCCCCCCCCHHHHHHHHHh--cCCeEEEE-cCCCCCcccC-HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC
Q psy13354 140 FNSICYGLNKKEKIDYKKVEYLAKK--NKPKLIIA-GASAYSQYID-FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN 215 (1342)
Q Consensus 140 ~~~v~~~~~~~~~id~e~Le~~i~~--~~~~liv~-~~s~~~~~~~-l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~ 215 (1342)
+++.++.+++|.+|+++|++++.+ .++++|++ ++++++...+ +++|+++||++|.++++|+|+..+...- ..
T Consensus 601 -~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l---~~ 676 (939)
T TIGR00461 601 -QVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGL---TS 676 (939)
T ss_pred -EEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecccHHHHHHHHHHcCCEEEEEecChhhCCCC---CC
Confidence 556667778899999999999985 24455544 4455544445 9999999999999999999986543311 11
Q ss_pred CCC-CCcEEEecCCccCCCC-----Ce-eEEEEechhHHHHhhccC---------Cc----ccc-CCcH-HHHHHHHHHH
Q psy13354 216 PVP-FADFITSTTHKSLRGP-----RG-GFILMKKKYKKIINSAVF---------PG----IQG-GPLM-HVIAAKAVAF 273 (1342)
Q Consensus 216 ~l~-~~Divv~S~sK~l~gp-----~G-G~iv~~~~l~~~l~~~~~---------~~----~~~-~~~~-~~~~Aaa~al 273 (1342)
+-+ .+|++++|.||+|++| +| |++.+++++...+-.... .. ..+ +..+ .....++..+
T Consensus 677 Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi 756 (939)
T TIGR00461 677 PGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYI 756 (939)
T ss_pred ccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHH
Confidence 222 4899999999999744 44 999999876555431100 00 001 1111 1222333344
Q ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC---CeEEEEEccCC-----CCCHHHHHHHHHHCCceeeecc
Q psy13354 274 KEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK---SHIILVDLRNK-----KITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 274 ~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~---~~~v~i~~~~~-----~~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
..+..+++++..+....+++|+.+.|.+ ++++...... .+-+.++++.. ....+++.+|++. |+......
T Consensus 757 ~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~-G~hapt~~ 834 (939)
T TIGR00461 757 KMMGNEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDY-GFHAPTLS 834 (939)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhC-CeeccccC
Confidence 4455667888888899999999999987 5665543221 23455666531 2345677777765 99876544
Q ss_pred CC
Q psy13354 346 IP 347 (1342)
Q Consensus 346 ~p 347 (1342)
+|
T Consensus 835 ~p 836 (939)
T TIGR00461 835 FP 836 (939)
T ss_pred Cc
Confidence 44
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-11 Score=144.77 Aligned_cols=250 Identities=20% Similarity=0.235 Sum_probs=172.3
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~ 145 (1342)
+++....||+ .++.+-|.+.++.|+ ||+.|+..++.+++++||+|+++.-.|++.+..... +...|+ ++..+
T Consensus 61 ~nPT~~~lE~----~~a~LEg~~~~~afs-SGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi--~~~~~ 133 (396)
T COG0626 61 GNPTRDALEE----ALAELEGGEDAFAFS-SGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGV--EVTFV 133 (396)
T ss_pred CCccHHHHHH----HHHHhhCCCcEEEec-CcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCe--EEEEE
Confidence 4677777887 888888999999999 999999999999999999999977777776665544 455666 44444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Di 222 (1342)
+.. +.+.+++++.+.++++|++-.|.|| ...|+++|+++|+++|+++|+|.+++.+.+ ..|++. +||
T Consensus 134 d~~-----~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~-----q~PL~~GaDI 203 (396)
T COG0626 134 DPG-----DDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVL-----QRPLELGADI 203 (396)
T ss_pred CCC-----ChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccc-----cChhhcCCCE
Confidence 433 5667777776545677777665566 555999999999999999999998766554 456665 899
Q ss_pred EEecCCccCCCCC---eeEEEEechh-HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKY-KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l-~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
++.|.+|.++|-. ||+++++++. .+.+... .....|+..+|..+-+ . .+-+. -+..+.++..+|+..+.+.
T Consensus 204 VvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~-~~~~~G~~l~p~dA~l--~-lRGlk-TL~~Rm~~~~~nA~~IA~~ 278 (396)
T COG0626 204 VVHSATKYLGGHSDVLGGVVLTPNEELYELLFFA-QRANTGAVLSPFDAWL--L-LRGLR-TLALRMERHNENALKIAEF 278 (396)
T ss_pred EEEeccccccCCcceeeeEEecChHHHHHHHHHH-HHhhcCCCCCHHHHHH--H-Hhccc-hHHHHHHHHHHHHHHHHHH
Confidence 9999999995432 2877766644 4443221 1112344444444432 2 22232 4556788999999999999
Q ss_pred HHhCC-cE-EeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCceee
Q psy13354 299 LDQRG-IR-IVSGG---------------TKSHIILVDLRNKKITGKIAESILESANIICN 342 (1342)
Q Consensus 299 L~~~g-~~-~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~ 342 (1342)
|.+.. +. ++.++ ..+.++.+.+.+. +.+.++++.-.+...
T Consensus 279 L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~----~~~~~f~~~L~l~~~ 335 (396)
T COG0626 279 LADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE----EAAKKFLDSLKLFKL 335 (396)
T ss_pred HhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh----HHHHHHHHhCCccEE
Confidence 99853 33 32222 1345666776653 556777776555554
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-12 Score=154.27 Aligned_cols=298 Identities=13% Similarity=0.064 Sum_probs=172.2
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc------
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL------ 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~------ 110 (1342)
.+-.|.+.+++.+.+.+ +. ... . ....+... ++.++++++.+.+.+.+++ ||++|+..++....
T Consensus 55 Gh~~p~v~~a~~~~~~~-~~-~~~--~-~~~~~~~~----~l~~~l~~~~~~~~~~~~~-sGseA~e~a~klar~~~~~~ 124 (403)
T PRK05093 55 GHCHPALVKALKEQGEK-LW-HIS--N-VFTNEPAL----RLAKKLIDATFAERVFFAN-SGAEANEAAFKLARRYACDR 124 (403)
T ss_pred CCCCHHHHHHHHHHHHh-cC-ccc--C-ccCCHHHH----HHHHHHHhhCCCCEEEEeC-chHHHHHHHHHHHHHHHhhc
Confidence 34566689998888753 21 111 1 11222233 4455788877666555555 99999999998651
Q ss_pred --CCCCEEEEeeccCCccchhhHHhh-----hCCc---eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 111 --NPGDTIMGMSLQEGGHLTHGMMLN-----MSGK---WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 111 --~pGD~Vlv~~~~~~~~~s~~~~~~-----~~g~---~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
...+.|+..+..+.+.......+. ..+. ....+.++.+ |++.+++.+.+ +.++|++.+.+.+
T Consensus 125 ~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~-~~aaiiiep~~~~gg 198 (403)
T PRK05093 125 HGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFN-----DLAAVKAVIDD-HTCAVVVEPIQGEGG 198 (403)
T ss_pred CCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCC-----CHHHHHHHhcC-CeEEEEEecccCCCC
Confidence 123456655544333221110000 0000 0012223333 78999988864 4666776553332
Q ss_pred ----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-CCeeEEEEechhHHHHh
Q psy13354 179 ----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG-PRGGFILMKKKYKKIIN 250 (1342)
Q Consensus 179 ----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g-p~GG~iv~~~~l~~~l~ 250 (1342)
....+++|+++|++||+++|+||+|. |....+.... ... .+|+ .|+||++++ ...|++++++++++.+.
T Consensus 199 ~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi--~s~sK~l~~G~rig~vv~~~~i~~~l~ 275 (403)
T PRK05093 199 VIPATPEFLQGLRELCDQHNALLIFDEVQT-GMGRTGDLFAYMHYGVTPDI--LTSAKALGGGFPIGAMLTTAEIASHFK 275 (403)
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCccchhhhhcCCCCCE--EEecccccCCcceEEEEEcHHHHhhcC
Confidence 22359999999999999999999987 4322332211 111 1464 477899942 11299999999988886
Q ss_pred hccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcE--Ee-eCCCCCeEEEEEccCCC--C
Q psy13354 251 SAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIR--IV-SGGTKSHIILVDLRNKK--I 325 (1342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~--~~-~~~~~~~~v~i~~~~~~--~ 325 (1342)
.......++ .+.+.++++..++ +.... .+..+++.++.+++.+.|.+.+.. +. ..+..+.++|+.++... .
T Consensus 276 ~~~~~~t~~-~~~~~~~aa~a~L-~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~ 351 (403)
T PRK05093 276 VGTHGSTYG-GNPLACAVAEAVF-DIINT--PEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKGR 351 (403)
T ss_pred CCCCCCCCC-CCHHHHHHHHHHH-HHHhh--ccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcchhH
Confidence 543433443 2333444444333 33321 245678888999999999875321 11 11234667888876432 3
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+++..++++ ||.+.+. + .+++|++++..++
T Consensus 352 ~~~~~~~l~~~-Gv~v~~~-------g---~~~lRl~~~~~~~ 383 (403)
T PRK05093 352 ARDFLNAAAEE-GVMVLVA-------G---PDVLRFAPSLVIE 383 (403)
T ss_pred HHHHHHHHHHC-CeEEecC-------C---CCEEEEeCCCCCC
Confidence 45677777765 9998742 1 2469998777655
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=155.02 Aligned_cols=210 Identities=18% Similarity=0.165 Sum_probs=142.4
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++....|++ .++++.|.+.+++++ ||+.|+.+++ ++++|||+|++++..+++.+... ..+...|+ .+..++
T Consensus 49 ~p~~~~Le~----~la~l~g~~~al~~~-SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi--~v~~vd 120 (380)
T PRK06176 49 NPTRFALEE----LIADLEGGVKGFAFA-SGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGL--SCTIID 120 (380)
T ss_pred ChhHHHHHH----HHHHHhCCCCEEEEC-CHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCe--EEEEcC
Confidence 444556666 999999998888877 9999998766 56799999999887776554433 23445565 444444
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.. |++++++++++ ++++|++..+++| ...|+++|+++|+++|++||+|++|+.+... .++. .+|++
T Consensus 121 ~~-----d~e~l~~ai~~-~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~-----~p~~~gaDiv 189 (380)
T PRK06176 121 TS-----DLSQIKKAIKP-NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQ-----NPLLLGADIV 189 (380)
T ss_pred CC-----CHHHHHHhcCc-CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccC-----CccccCCCEE
Confidence 33 89999998876 4566666555555 4559999999999999999999998764331 1222 47999
Q ss_pred EecCCccCCCCC---eeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|++|+++|+. ||++++++ ++.+.++..... .+....+..+.. . ...+ ..+..+.++..+++..+.+.|
T Consensus 190 v~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~--~G~~~~~~~~~l--~-~~gl-~tl~~R~~~~~~~a~~la~~L 263 (380)
T PRK06176 190 VHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNA--IGGVLGPQDSWL--L-QRGI-KTLGLRMEAHQKNALCVAEFL 263 (380)
T ss_pred EecCceeccCCccceeeEEEecHHHHHHHHHHHHHH--hcCCCCHHHHHH--H-Hhcc-CcHHHHHHHHHHHHHHHHHHH
Confidence 999999997654 58888754 565555432221 122222222211 1 1112 245566788888999999999
Q ss_pred HhC
Q psy13354 300 DQR 302 (1342)
Q Consensus 300 ~~~ 302 (1342)
++.
T Consensus 264 ~~~ 266 (380)
T PRK06176 264 EKH 266 (380)
T ss_pred HhC
Confidence 875
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=158.16 Aligned_cols=216 Identities=16% Similarity=0.153 Sum_probs=142.3
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++...++|+ .++++.|.+++++++ ||++|+..++.+++++||+|++++..|++...... .+...|+ +++.+
T Consensus 62 ~~p~~~~le~----~lA~l~g~~~av~~s-SGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi--~v~~v 134 (433)
T PRK08134 62 SNPTVAVLEE----RVAALEGGVGAIATA-SGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGI--ETTFV 134 (433)
T ss_pred cChHHHHHHH----HHHHHhCCCcEEEeC-CHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCe--EEEEE
Confidence 3455556666 999999998876666 99999999999999999999998877765433322 2344565 55555
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
+.+ |++++++++++.+..+++.+++|+. ...|+++|+++|+++|+++|+|++|+.+.. ..++. .+|++
T Consensus 135 d~~-----d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~-----~~pl~~GaD~v 204 (433)
T PRK08134 135 KPG-----DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYL-----LRPFEHGADLV 204 (433)
T ss_pred CCC-----CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCccccc-----CCchhcCCCEE
Confidence 554 8999999998755444444444333 556999999999999999999999987654 22333 48999
Q ss_pred EecCCccCCCCC---eeEEEEechhH-------HHHhhc------------------------cCCccccCCcHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKKKYK-------KIINSA------------------------VFPGIQGGPLMHVIAAK 269 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~~l~-------~~l~~~------------------------~~~~~~~~~~~~~~~Aa 269 (1342)
+.|.||+++|+. ||+++.+.... ..+... ......+...++..+++
T Consensus 205 v~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l 284 (433)
T PRK08134 205 YHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQ 284 (433)
T ss_pred EeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999994433 26555322110 000000 00011222233333332
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 270 AVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 270 a~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
. ...++ .+..+.++..+++..+.+.|++..
T Consensus 285 ~---~~gL~-tl~~R~~~~~~nA~~la~~L~~~p 314 (433)
T PRK08134 285 L---LQGIE-TLPLRMERHVANTRKVVAFLASHP 314 (433)
T ss_pred H---hcCCC-cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2 22232 567788999999999999998853
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.5e-12 Score=147.71 Aligned_cols=312 Identities=15% Similarity=0.106 Sum_probs=203.9
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~ 104 (1342)
+.+.+.+|+..+|++|++++...+.+--..|.+--......+...++.+.+++.++++++.+ +++++.+|||.++.+
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea 86 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAA 86 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHH
Confidence 34778999999999999999988753222232222222345566688888999999999975 467777899999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchh--hHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cc
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTH--GMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QY 180 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~--~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~ 180 (1342)
+...++.+||++++.. .+.++. ...+...|........+.. ....+++++++. ....+.+.++.+..+ +.
T Consensus 87 ~~~nl~~~~~~~l~~~---~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~hnETstGv 160 (365)
T PLN02452 87 IPLNLCKPGDKADFVV---TGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWEL---TPDAKFVHICANETIHGV 160 (365)
T ss_pred HHHhcCCCCCeEEEEE---CCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHcCC---CCCCcEEEECCCCCCCcE
Confidence 9999999999988654 444442 3345555652222211111 112456666422 123455555444433 22
Q ss_pred --cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc--
Q psy13354 181 --IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV-- 253 (1342)
Q Consensus 181 --~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~-- 253 (1342)
.+++++. ++++|+|.++++|.. +++ ..++..+|.+|++ ||+| |+++.++++.+.+....
T Consensus 161 ~~~~~~~i~------~~~lvVDa~Ss~g~~-------pidv~~~~v~~~saqK~l-GP~Gl~~v~vr~~~l~~~~~~~~~ 226 (365)
T PLN02452 161 EFKDYPDVG------NVPLVADMSSNFLSK-------PVDVSKYGVIYAGAQKNV-GPSGVTIVIIRKDLIGNARPITPG 226 (365)
T ss_pred ecCcccccC------CCeEEEECCccccCc-------ccCHHHcCEEEEeccccc-CCCCeEEEEEcHHHHhhcccCCCc
Confidence 3565553 389999999988765 333 2356667999999 8999 99999998776654321
Q ss_pred ---------CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhC-CcEEe-eCC--CCCeEEEEE
Q psy13354 254 ---------FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQR-GIRIV-SGG--TKSHIILVD 319 (1342)
Q Consensus 254 ---------~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~-g~~~~-~~~--~~~~~v~i~ 319 (1342)
....+++|+.+...++..++..+.++ +++.+.++.++.++++++.|++. |+... ..+ .....+.+.
T Consensus 227 ~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~ 306 (365)
T PLN02452 227 MLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFT 306 (365)
T ss_pred hhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEE
Confidence 11223678888888888888877765 79999999999999999999984 66211 111 122456677
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+++..+ .+.+.+.++++|+...++ +.. -+++|+|+=...+
T Consensus 307 ~~~~~~-~~~f~~~~~~~g~~~~~G----~r~----~gg~R~s~yna~~ 346 (365)
T PLN02452 307 LGGSEL-EAEFVKEAAKAGMVQLKG----HRS----VGGMRASIYNAMP 346 (365)
T ss_pred cCCchh-HHHHHHHHHHCCCcccCC----ccc----cCceEEECcCCCC
Confidence 776543 344555555669988643 322 2349998766433
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-12 Score=150.83 Aligned_cols=248 Identities=20% Similarity=0.286 Sum_probs=167.5
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++....+|+ .++++.|.+.+++++ ||+.|+..++.+++++||+|+++...|++...... .+...|+. +..+
T Consensus 53 gnPt~~~le~----~la~Le~g~~a~~~~-SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~--v~~~ 125 (386)
T PF01053_consen 53 GNPTVRALEQ----RLAALEGGEDALLFS-SGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVE--VTFV 125 (386)
T ss_dssp C-HHHHHHHH----HHHHHHT-SEEEEES-SHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSE--EEEE
T ss_pred ccccHHHHHH----HHHHhhcccceeecc-chHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcE--EEEe
Confidence 4666666666 889999999899988 99999999999999999999998877766555444 34556664 4444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcC-CEEEEEcccchhhhhcCCCCCCCCC-Cc
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNIN-SYFMVDMAHYAGLIAAGEYPNPVPF-AD 221 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~g-i~LIvDea~~~g~~~~~~~~~~l~~-~D 221 (1342)
+.. |++++++++++ +.++|++-.+.|| ...|+++|+++|+++| +++++|.+.+.... ..++.. +|
T Consensus 126 d~~-----d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~-----~~pL~~GaD 194 (386)
T PF01053_consen 126 DPT-----DLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYN-----QNPLELGAD 194 (386)
T ss_dssp STT-----SHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTT-----C-GGGGT-S
T ss_pred Cch-----hHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceee-----eccCcCCce
Confidence 544 89999999987 5566666555555 5559999999999998 99999998765433 345554 89
Q ss_pred EEEecCCccCCCCC---eeEEEEec--hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGPR---GGFILMKK--KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILS 296 (1342)
Q Consensus 222 ivv~S~sK~l~gp~---GG~iv~~~--~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~ 296 (1342)
+++.|.+|+++|-. ||++++++ ++.+.++... ...|...+|..+.+. . ..+. -+..+.++..+|+..+.
T Consensus 195 ivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~--~~~G~~~~p~da~ll--~-rgl~-Tl~~R~~~~~~nA~~lA 268 (386)
T PF01053_consen 195 IVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFR--RLLGATLSPFDAWLL--L-RGLR-TLPLRMERQNENAEALA 268 (386)
T ss_dssp EEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH--HHHT-B--HHHHHHH--H-HHHT-THHHHHHHHHHHHHHHH
T ss_pred EEEeeccccccCCcceeeEEEEECchhhhhhhhcchh--hhcCccchHHHHHHH--h-cCCC-cHHHHHHHHHHHHHHHH
Confidence 99999999996543 38888776 6766665432 234444444444332 2 2232 56677899999999999
Q ss_pred HHHHhCC-cE-EeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 297 KILDQRG-IR-IVSGG---------------TKSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 297 ~~L~~~g-~~-~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
+.|++.. +. +..+. ..+.++.+.+++.. +.+..+++.-.+..
T Consensus 269 ~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~---~~~~~f~~~l~l~~ 327 (386)
T PF01053_consen 269 EFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGE---EAARRFLDALKLFS 327 (386)
T ss_dssp HHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHH---HHHHHHHHH-SSSE
T ss_pred HHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccch---hhhHhHHhhhhhHh
Confidence 9999864 33 33221 22347778877532 56777777766653
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=156.03 Aligned_cols=214 Identities=18% Similarity=0.173 Sum_probs=143.7
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++....|++ .++++.|.+.+++++ ||++|+..++.++++|||+|+++...|++..... ..+...|+ .++.++
T Consensus 62 ~p~~~~le~----~lA~l~g~~~al~~~-SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~--~v~~vd 134 (427)
T PRK05994 62 NPTNAVLEE----RVAALEGGTAALAVA-SGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGW--QVRWAD 134 (427)
T ss_pred CccHHHHHH----HHHHHhCCCcEEEEc-CHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCc--EEEEEC
Confidence 344555666 899999998877777 9999999999999999999999887776554332 22445566 444445
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++++++++++. +++|++..+++| ...|+++|+++|+++|+++|+|++|+.+.. ..+++ .+|++
T Consensus 135 ~~-----d~~~l~~ai~~~-tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~-----~~pl~~gaDiv 203 (427)
T PRK05994 135 AD-----DPASFERAITPR-TKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYL-----IRPIEHGADIV 203 (427)
T ss_pred CC-----CHHHHHHhcCcC-CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcccccc-----CCccccCCcEE
Confidence 43 889999988764 556555555554 455999999999999999999999976543 22333 48999
Q ss_pred EecCCccCCCCCe---eEEEEech-----------------------hHHHHh-------h-ccCCccccCCcHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILMKKK-----------------------YKKIIN-------S-AVFPGIQGGPLMHVIAAK 269 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~~~-----------------------l~~~l~-------~-~~~~~~~~~~~~~~~~Aa 269 (1342)
+.|++|+++|+.+ |+++.... +.+.+. . .......|..+++..+++
T Consensus 204 v~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l 283 (427)
T PRK05994 204 VHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFL 283 (427)
T ss_pred EEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999965543 66653221 111100 0 000112233344444443
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 270 AVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 270 a~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
... .+ ..+..+.++..+++..+.+.|++.+
T Consensus 284 ~~~---~l-~tL~~r~~~~~~~a~~la~~L~~~p 313 (427)
T PRK05994 284 ILT---GI-ETLPLRMQRHSDNALAVAEWLKGHP 313 (427)
T ss_pred HHc---Cc-ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 322 22 2566778899999999999998853
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.3e-13 Score=146.96 Aligned_cols=200 Identities=14% Similarity=0.195 Sum_probs=142.4
Q ss_pred CCCcccccc--chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhcc
Q psy13354 387 PSNFNTLIG--QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDN 464 (1342)
Q Consensus 387 p~~f~~lvG--q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~ 464 (1342)
+.+|++.++ ++.+++.+.+.+... .++.++|+||+|+|||++|+.+++.+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lll~G~~G~GKT~la~~~~~~~~~~~----------------------- 66 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGK-GDRFLYLWGESGSGKSHLLQAACAAAEERG----------------------- 66 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHHHhcC-----------------------
Confidence 457888763 567888888886643 455689999999999999999999875211
Q ss_pred CCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH--HHHHHHHhhcCCC-CcEEEEEEeCCCC-
Q psy13354 465 GCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH--AFNAMLKTLEEPP-KYIKFILATTEPQ- 540 (1342)
Q Consensus 465 ~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~--~~~~Ll~~Le~p~-~~~vlIl~t~~~~- 540 (1342)
..++.++++... ....++++. .....+++|||++.++.. ..+.|...++... ....+|++++...
T Consensus 67 ---~~~~~i~~~~~~--~~~~~~~~~------~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~ 135 (226)
T TIGR03420 67 ---KSAIYLPLAELA--QADPEVLEG------LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPA 135 (226)
T ss_pred ---CcEEEEeHHHHH--HhHHHHHhh------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChH
Confidence 123334332211 111222222 233469999999998753 3666766655311 1235666666432
Q ss_pred C--Ch-HHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh---cCCC
Q psy13354 541 K--IP-ITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY---SSEK 611 (1342)
Q Consensus 541 k--l~-~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~---~~~~ 611 (1342)
. .. +.+.+|+ ..+.+++++.++...++..++.+.++.+++++++.|++.++||+|.+.+.++++..+ .++.
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~ 215 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRK 215 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 2 22 6778775 589999999999999999999889999999999999999999999999998886654 3566
Q ss_pred CCHHHHHHHh
Q psy13354 612 ITLNSMQEML 621 (1342)
Q Consensus 612 It~e~V~~~v 621 (1342)
||.+.|.+++
T Consensus 216 i~~~~~~~~~ 225 (226)
T TIGR03420 216 ITIPFVKEVL 225 (226)
T ss_pred CCHHHHHHHh
Confidence 9999998875
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=156.39 Aligned_cols=214 Identities=18% Similarity=0.192 Sum_probs=142.5
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~ 146 (1342)
++....|++ .++++.|.+.+++++ ||++|+..++.+++++||+|++....+++...... .+...|+ .+..++
T Consensus 57 ~pt~~~Le~----~lA~l~g~~~~l~~s-sG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi--~v~~~d 129 (425)
T PRK06084 57 NPTNDVLEQ----RVAALEGGVGALAVA-SGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGI--ETRFAA 129 (425)
T ss_pred CchHHHHHH----HHHHHhCCCceeEeh-hHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhccccee--EEEEEC
Confidence 444556666 899999988888777 99999999999999999999988766664333221 1222343 444344
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.. |++++++++++. +++|++.++++| ...++++|+++|+++|++||+|++|+.+.. ..++. .+|++
T Consensus 130 ~~-----d~e~le~ai~~~-tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~-----~~p~~~gaDiv 198 (425)
T PRK06084 130 HD-----DIAALEALIDER-TKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVL-----CRPFEHGADIV 198 (425)
T ss_pred CC-----CHHHHHHHhccC-CcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----CChhhcCCCEE
Confidence 32 899999998764 566666555555 555999999999999999999999986543 22333 37999
Q ss_pred EecCCccCCCCC---eeEEEEechhH-HHHhhcc-------------------------------CCccccCCcHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKKKYK-KIINSAV-------------------------------FPGIQGGPLMHVIAA 268 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~~l~-~~l~~~~-------------------------------~~~~~~~~~~~~~~A 268 (1342)
+.|++|+++|+. ||+++.+.... ....... .....|...+|..++
T Consensus 199 v~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~ 278 (425)
T PRK06084 199 VHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAF 278 (425)
T ss_pred EECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 999999996543 37776543211 0000000 001223334444443
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 269 KAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 269 aa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
+.. ..+ ..+..+.++..+++..+.+.|++.+
T Consensus 279 l~l---rgl-~tl~~R~~~~~~na~~la~~L~~~p 309 (425)
T PRK06084 279 LIL---QGL-ETLALRMERHTENALKVARYLQQHP 309 (425)
T ss_pred HHH---cCc-CcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 322 222 2566788999999999999999853
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.9e-12 Score=153.56 Aligned_cols=299 Identities=13% Similarity=0.080 Sum_probs=170.8
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc----cCC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV----LNP 112 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al----~~p 112 (1342)
.+-.|.+.+++.+.+......+ . .+ ..+...+ +.+++++..+.+. +++++||++|+..+++++ ..+
T Consensus 46 Gh~~p~v~~a~~~~~~~~~~~~---~-~~-~~~~~~~----la~~l~~~~~~~~-v~~~~sGseA~~~al~~ar~~~~~~ 115 (389)
T PRK01278 46 GHAHPHLVEALKEQAEKLWHVS---N-LY-RIPEQER----LAERLVENSFADK-VFFTNSGAEAVECAIKTARRYHYGK 115 (389)
T ss_pred CCCCHHHHHHHHHHHHhcCccc---c-cc-CChHHHH----HHHHHHhhCCCCE-EEEcCCcHHHHHHHHHHHHHHHHhc
Confidence 3455779999888875322111 1 11 2233333 4457887776554 455559999999999877 456
Q ss_pred CC----EEEEeeccCCccchhhHHhhhCCceeEEEEe-cCCCCCC----CCHHHHHHHHHhcCCeEEEEcCCCCC-----
Q psy13354 113 GD----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICY-GLNKKEK----IDYKKVEYLAKKNKPKLIIAGASAYS----- 178 (1342)
Q Consensus 113 GD----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~-~~~~~~~----id~e~Le~~i~~~~~~liv~~~s~~~----- 178 (1342)
|| +|++.+..+.++...+... .+.......+ +...++. .|++++++.+++ +.++|++.+.+++
T Consensus 116 G~~~r~~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~avivep~~~~~G~~~ 192 (389)
T PRK01278 116 GHPERYRIITFEGAFHGRTLATIAA--GGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITP-NTAAILIEPIQGEGGIRP 192 (389)
T ss_pred CCCCCCEEEEECCCcCCCcHHHHhc--cCChhhcccCCCCCCCceEeCCCCHHHHHHhhCC-CeEEEEEecccCCCCCcC
Confidence 76 8888776665553333221 1110000000 1111111 489999998875 5667777665433
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-CCeeEEEEechhHHHHhhcc
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG-PRGGFILMKKKYKKIINSAV 253 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g-p~GG~iv~~~~l~~~l~~~~ 253 (1342)
...++++|.++|++||++||+||+|. |....+.... ... .+|++ +++|.+++ ...|++++++++++.+....
T Consensus 193 ~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~ 269 (389)
T PRK01278 193 APDEFLKGLRQLCDENGLLLIFDEVQC-GMGRTGKLFAHEWAGVTPDIM--AVAKGIGGGFPLGACLATEEAAKGMTPGT 269 (389)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCcceeecccCCCCCEE--EEehhccCCcceEEEEEcHHHHhccCCCC
Confidence 23379999999999999999999987 3222222111 111 14654 67899942 12399999998888876544
Q ss_pred CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cE-Eee-CCCCCeEEEEEccCCCCCHHH
Q psy13354 254 FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IR-IVS-GGTKSHIILVDLRNKKITGKI 329 (1342)
Q Consensus 254 ~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~-~~~-~~~~~~~v~i~~~~~~~~~~~ 329 (1342)
....+++ ++...+++.+..+.+.+ ....+++.++.+++.+.|+... .. +.. ....+.++++.+.. .+.++
T Consensus 270 ~~~t~~~--~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~~--~~~~~ 343 (389)
T PRK01278 270 HGSTYGG--NPLAMAVGNAVLDVILA--PGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVV--PNRDL 343 (389)
T ss_pred CCCCCCc--cHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEec--CHHHH
Confidence 4444443 33444444444444321 1234556666666666665421 11 111 11234566666643 34567
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
...++++ ||.+.|.. .+++|++++..++
T Consensus 344 ~~~l~~~-GV~~~p~~----------~~~lR~~p~~~~~ 371 (389)
T PRK01278 344 VQALRDE-GLLTVGAG----------DNVVRLLPPLIIT 371 (389)
T ss_pred HHHHHHC-CeEEeecC----------CCEEEEeCCcccC
Confidence 7777776 99987541 2469998765444
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-12 Score=154.88 Aligned_cols=237 Identities=20% Similarity=0.180 Sum_probs=152.9
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc---CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK---KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~---~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
++...|.| +.++|++..++.|...+.. +..++.++++||+|+|||++++.+++.+..... .....+.+|..+
T Consensus 22 ~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~--~~~~v~in~~~~ 96 (394)
T PRK00411 22 VLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAV--KVVYVYINCQID 96 (394)
T ss_pred hCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEECCcC
Confidence 34445556 5688998888888777633 344556899999999999999999998853220 011233444443
Q ss_pred cchhhhccCCCccEEEEcc-CCCcCHHH-HHHHHHHHhhcCccCCceEEEeccCccCC----HHHHHHHHHhhcCCC-Cc
Q psy13354 457 SVCVKIDNGCFMDYIEMDA-ASTRGINE-MAQLLEQTIYAPINARYKIYVIDEVHMLT----HHAFNAMLKTLEEPP-KY 529 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~-~~~~~~~~-i~~ii~~~~~~p~~~~~rvviIDE~~~L~----~~~~~~Ll~~Le~p~-~~ 529 (1342)
.+...+.......+..... ......+. +..+.+.+.. .+.+.||+|||+|.+. .+....|++.+++.+ ..
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~ 173 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDE---RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGAR 173 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCe
Confidence 3221111000000000000 00011122 2222222221 2344689999999885 345566666665433 36
Q ss_pred EEEEEEeCCCC---CChHHHhccE--EEEEEcCCCHHHHHHHHHHHHHhc--CCCcchhHHHHHHHhc---CCcHHHHHH
Q psy13354 530 IKFILATTEPQ---KIPITVLSRC--IQFNLKKMLHHDIVNNLCYILNKE--NIKFETSALNLIATGA---QGSMRDALS 599 (1342)
Q Consensus 530 ~vlIl~t~~~~---kl~~~L~sR~--~~i~~~~l~~~el~~~l~~~~~~~--g~~i~~~al~~La~~~---~g~lr~a~~ 599 (1342)
+.+|++++..+ .+.+.+.+|+ ..+.|++++.+++.+++..+++.. ...+++++++.+++.+ .||+|.+++
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ 253 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAID 253 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHH
Confidence 77888888654 4556777776 678999999999999999998753 3468999999999988 899999999
Q ss_pred HHHHHHhhc----CCCCCHHHHHHHhccC
Q psy13354 600 LTDQAINYS----SEKITLNSMQEMLSII 624 (1342)
Q Consensus 600 ~L~kl~~~~----~~~It~e~V~~~v~~~ 624 (1342)
.|.++...+ ...||.++|.+++...
T Consensus 254 ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 254 LLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 998876654 2459999999888655
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.4e-12 Score=149.27 Aligned_cols=244 Identities=17% Similarity=0.152 Sum_probs=160.4
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++...+||+ .++++.|.+.+++++ ||+.|+.+++.+++++||+|+++...++..+... ..+...|+. ++.+
T Consensus 62 ~~P~~~~lE~----~la~leg~~~av~~s-SG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~--v~fv 134 (384)
T PRK06434 62 GNPTVQAFEE----KYAVLENAEHALSFS-SGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIH--VDYI 134 (384)
T ss_pred CChhHHHHHH----HHHHHhCCCcEEEeC-CHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcE--EEEE
Confidence 5676777777 899999999888888 9999999999999999999998776666655443 445666774 4444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.++.. .+. +.+.++++|++..+.++ ...|+++|+++|++++ +++|.+++.+.. ..+++ .+|+
T Consensus 135 d~~~~~-----~~~--l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~-----~~pl~~gaDi 200 (384)
T PRK06434 135 DTDRLN-----SLD--FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYN-----QNPLDLGADV 200 (384)
T ss_pred CCCChh-----hee--ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCccc-----CCchhcCCCE
Confidence 544211 111 22334567666554444 5559999999999998 467999754322 22333 4899
Q ss_pred EEecCCccCCCCC---eeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+++|.+|+++|+. ||++++++ ++.+.++.... ..|...++..+++.. ..+ ..+..+.++..+++..+.+.
T Consensus 201 vv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~--~~G~~~~~~~A~l~~---~gL-~tL~~R~~r~~~~a~~~a~~ 274 (384)
T PRK06434 201 VIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRK--TLGSNPDPIQAYLAL---RGL-KTLGLRMEKHNKNGMELARF 274 (384)
T ss_pred EEeecccccCCCCCceEEEEecCcHHHHHHHHHHHH--hcCCCCCHHHHHHHH---hCC-CcHHHHHHHHHHHHHHHHHH
Confidence 9999999997744 58887754 55555553221 223333444444322 222 35677889999999999999
Q ss_pred HHhCC-cE-EeeCC---------CCCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 299 LDQRG-IR-IVSGG---------TKSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 299 L~~~g-~~-~~~~~---------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
|++.. +. +..++ ..+.++.+.++. .+.+.++++.-.+..
T Consensus 275 L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~----~~~~~~f~~~l~l~~ 324 (384)
T PRK06434 275 LRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRS----MEDVHKFIRNLEIPM 324 (384)
T ss_pred HHcCCCccEEECCChHHHHHhcCCCCceEEEEECC----HHHHHHHHHhCCcce
Confidence 99864 32 22221 134567777753 455667777655443
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-13 Score=157.88 Aligned_cols=260 Identities=20% Similarity=0.193 Sum_probs=164.4
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEE
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMG 118 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv 118 (1342)
..|++++++..+.. |. ..|+..+...++++ ++++++|.+.+++++ +||.|+..+++++++|++.|++
T Consensus 7 ~~~~m~~a~~~a~~-----gd---~~Yg~D~~~~~l~~----~i~~l~g~e~a~f~~-sGT~An~~al~~~~~~~~~vi~ 73 (290)
T PF01212_consen 7 PTPAMLEAMAAANV-----GD---DAYGEDPTTARLEE----RIAELFGKEAALFVP-SGTMANQLALRAHLRPGESVIC 73 (290)
T ss_dssp S-HHEEHHHHHTTS-----B----CCTTSSHHHHHHHH----HHHHHHTSSEEEEES-SHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHcccc-----CC---cccCCChhHHHHHH----HHHHHcCCCEEEEeC-CCChHHHHHHHHHHhcCCceec
Confidence 66778888744432 11 23666666667777 999999999777666 9999999999999999999997
Q ss_pred eeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh-----cCCeEEEEcCCCCC------cccCHHHHH
Q psy13354 119 MSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK-----NKPKLIIAGASAYS------QYIDFERFY 187 (1342)
Q Consensus 119 ~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~-----~~~~liv~~~s~~~------~~~~l~~I~ 187 (1342)
....|.............|. ++++++.+++|.+++++|++.+.. ..+++|.+..+++. +..++++|.
T Consensus 74 ~~~aHi~~~E~ga~~~~~G~--~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~ 151 (290)
T PF01212_consen 74 ADTAHIHFDETGAIEELSGA--KLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAIS 151 (290)
T ss_dssp ETTEHHHHSSTTHHHHHTTC--EEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHH
T ss_pred cccceeeeeccchhhHhcCc--EEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHH
Confidence 55332222222223345566 667667665599999999999987 34678888776663 333789999
Q ss_pred HHHHHcCCEEEEEcccchhhhhc-CC-CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccCCcHH-
Q psy13354 188 HIAKNINSYFMVDMAHYAGLIAA-GE-YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMH- 264 (1342)
Q Consensus 188 ~la~~~gi~LIvDea~~~g~~~~-~~-~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~- 264 (1342)
++|++||+.|+.|+|..+-.... +. .......+|++..|++|.++++.|+++++++++++......... .+.....
T Consensus 152 ~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~~~~~~~k~~-gg~~~~~G 230 (290)
T PF01212_consen 152 ELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPGGAVLAGNKEFIAKARRQRKRL-GGGMRQAG 230 (290)
T ss_dssp HHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSSEEEEEESHHHHHHHHHHHHHH-THHHHHTT
T ss_pred HHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccccceEEEechHHHHHHHHHHHHh-ccCeeecc
Confidence 99999999999999864322200 00 00012347999999999997788899999998655433221111 0000000
Q ss_pred HHHH--H-HHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEE
Q psy13354 265 VIAA--K-AVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHII 316 (1342)
Q Consensus 265 ~~~A--a-a~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v 316 (1342)
..++ + ..+....++.+ .....+-.++++++.+.|...|+.+.. +..++.+
T Consensus 231 ~~~a~~~~~~~~l~~l~~~-~~~~~~~~~~A~~La~~l~~~~~~~~~-~~~tn~~ 283 (290)
T PF01212_consen 231 VLAAAELYQFAALRALELW-LERARHANAMAKRLAAGLEALGGVLPR-PVETNQV 283 (290)
T ss_dssp HHHHHHHHHHHHHCHEECS-HHHHHCHHHHHHCHHHCHHEECEEEET-TSS-HHH
T ss_pred eeeeechhhHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHCCCcccC-CCCCcEE
Confidence 1111 0 01122223324 345677788999999999998887543 4444433
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >KOG0730|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-12 Score=152.05 Aligned_cols=189 Identities=17% Similarity=0.233 Sum_probs=145.2
Q ss_pred cCCCCccccccchhhHHHHHHHHHc-----------C-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDK-----------K-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~-----------~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~ 452 (1342)
....+|+|+-|++.++.+|++++.. | ..+.++|||||||||||++|+++|++..+
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~------------- 494 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM------------- 494 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC-------------
Confidence 3456899999999999999988742 3 67789999999999999999999998864
Q ss_pred CCCCcchhhhccCCCccEEEEccC------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH-----------H
Q psy13354 453 CGKCSVCVKIDNGCFMDYIEMDAA------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH-----------A 515 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~~i~~~------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~-----------~ 515 (1342)
+|+.+.+. -..+...+++++..+...+- -|+++||+|.+..+ .
T Consensus 495 ----------------nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP----~IiFfDEiDsi~~~R~g~~~~v~~RV 554 (693)
T KOG0730|consen 495 ----------------NFLSVKGPELFSKYVGESERAIREVFRKARQVAP----CIIFFDEIDALAGSRGGSSSGVTDRV 554 (693)
T ss_pred ----------------CeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCC----eEEehhhHHhHhhccCCCccchHHHH
Confidence 45555432 12344678888888877643 59999999988432 3
Q ss_pred HHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchh-HHHHHHHh
Q psy13354 516 FNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETS-ALNLIATG 589 (1342)
Q Consensus 516 ~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~-al~~La~~ 589 (1342)
.+.||.-++-. ..++++|.+||+++.++++|.+ |+ ..+.+++|+.+...++++..+++.. ++++ .++.|++.
T Consensus 555 lsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp--~~~~vdl~~La~~ 632 (693)
T KOG0730|consen 555 LSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP--FSEDVDLEELAQA 632 (693)
T ss_pred HHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC--CCccccHHHHHHH
Confidence 56677766643 3467778889999999999998 77 7899999999999999998887655 4454 68889998
Q ss_pred cCC-cHHHHHHHHHHHHhhc
Q psy13354 590 AQG-SMRDALSLTDQAINYS 608 (1342)
Q Consensus 590 ~~g-~lr~a~~~L~kl~~~~ 608 (1342)
+.| +=.++..+++.+..++
T Consensus 633 T~g~SGAel~~lCq~A~~~a 652 (693)
T KOG0730|consen 633 TEGYSGAEIVAVCQEAALLA 652 (693)
T ss_pred hccCChHHHHHHHHHHHHHH
Confidence 765 5566666676666554
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=157.06 Aligned_cols=215 Identities=18% Similarity=0.164 Sum_probs=144.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchh-hHHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTH-GMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~-~~~~~~~g~~~~~v~~~ 146 (1342)
++....+|+ .++++.|.+++++++ ||+.|+.+++.+++++||+|++++..+++.... ...+...|+. +..++
T Consensus 68 ~pt~~~le~----~la~l~g~~~~v~fs-SG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~--v~~vd 140 (437)
T PRK05613 68 NPTVEALEN----RIASLEGGVHAVAFA-SGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIE--VTFVE 140 (437)
T ss_pred ChHHHHHHH----HHHHHhCCCeEEEeC-CHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeE--EEEEC
Confidence 444455555 999999998888888 999999999999999999999988777766332 2344566764 44444
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFIT 224 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv 224 (1342)
+. .|++++++.+++++..+++.+++|+. ...|+++|+++|+++|+++|+|++++.+... .+.. .+|+++
T Consensus 141 -~~---~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~-----~p~~~GaDivv 211 (437)
T PRK05613 141 -NP---DDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALV-----RPLELGADVVV 211 (437)
T ss_pred -CC---CCHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCcccccc-----ChHHhCCCEEE
Confidence 21 27899999988754444444444443 4569999999999999999999998776441 2233 479999
Q ss_pred ecCCccCCCC-C--eeEEEEechhHH-----------------------------------HHhhccCCccccCCcHHHH
Q psy13354 225 STTHKSLRGP-R--GGFILMKKKYKK-----------------------------------IINSAVFPGIQGGPLMHVI 266 (1342)
Q Consensus 225 ~S~sK~l~gp-~--GG~iv~~~~l~~-----------------------------------~l~~~~~~~~~~~~~~~~~ 266 (1342)
+|+||+++|. . ||+++.+..... .... ......|...+|..
T Consensus 212 ~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~p~~ 290 (437)
T PRK05613 212 ASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARA-GLLRDTGATLSPFN 290 (437)
T ss_pred eeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHH-HHHHhcCCCCCHHH
Confidence 9999999543 2 477775432110 0000 00112233334444
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 267 AAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 267 ~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
+.+. ..-+ .-+..+.++..+++..+.+.|++.+
T Consensus 291 a~l~---~rgl-~TL~lR~~~~~~nA~~lA~~L~~hp 323 (437)
T PRK05613 291 AWVT---AQGL-DTLSLRLERHNENAIKVAEFLNNHE 323 (437)
T ss_pred HHHH---Hccc-CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4322 2222 2566678899999999999999864
|
|
| >KOG1358|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=145.56 Aligned_cols=328 Identities=18% Similarity=0.199 Sum_probs=217.2
Q ss_pred CceeeeecCCCCcHH----HHHHHhHHHHhccccCCC-CCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASENYTSLA----VMEAQGTLLTNKYAEGYP-GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~-~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
+.+..+++.||++.. +.+.....+. .|+.|.- .+++|+.-..+..+|+ .+++++|+++.++++ .|.+++
T Consensus 94 ~~~~N~aS~NfL~l~~~~~ike~a~~~lr-kyGvGsCGPrGFYGt~DvHldlE~----~iakF~G~E~aivYs-~gF~ti 167 (467)
T KOG1358|consen 94 KDVLNFASANFLGLIENEEIKEEASFTLR-KYGVGSCGPRGFYGTIDVHLDLEK----RIAKFMGTEDAIVYS-YGFSTI 167 (467)
T ss_pred ceeecccchhhhhhcccHHHHHHHHHHHH-HhCCCCcCCCcccccceeecccHH----HHHHhhCCcceeeec-cccchh
Confidence 445568889998876 7777677775 6765544 4466788888888898 999999999999999 899999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC------------CeEE
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK------------PKLI 170 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~------------~~li 170 (1342)
..++.++...||.+.+.. ..+++....+....- .+..+.++ |.++++..+.+.. .+.+
T Consensus 168 ~S~ipafsKrGDIi~~de---~~nfaIq~GlqlSRS--~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~Rrfi 237 (467)
T KOG1358|consen 168 ESAIPAFSKRGDIIFVDE---AVNFAIQKGLQLSRS--TISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTRRFI 237 (467)
T ss_pred hhcchhhhccCcEEEEeh---hhhHHHHHHHhhhhh--eeEEecCC-----CHHHHHHhccCcchhhhhccccccceEEE
Confidence 999999999999999544 444444433333332 45555666 6777766554322 2233
Q ss_pred EEcC--CCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-----CCCC-CCCCCcEEEecCCccCCCCCeeEEEEe
Q psy13354 171 IAGA--SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-----EYPN-PVPFADFITSTTHKSLRGPRGGFILMK 242 (1342)
Q Consensus 171 v~~~--s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-----~~~~-~l~~~Divv~S~sK~l~gp~GG~iv~~ 242 (1342)
++-. -|++...|+.+|+++..+|...||+||.+++|..+.. .+++ +....|++++|+.-++ +..|||.+++
T Consensus 238 v~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~al-as~GgFc~G~ 316 (467)
T KOG1358|consen 238 VVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETAL-ASGGGFCAGK 316 (467)
T ss_pred EEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccc-cccCceeecc
Confidence 3321 3444667999999999999999999999999887652 2332 2245799999999888 7778988886
Q ss_pred chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEcc
Q psy13354 243 KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLR 321 (1342)
Q Consensus 243 ~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~ 321 (1342)
.-+.+.-+-....+.++....|..+.++.......+ +-.+..+.+......+...|... ++.+. +...++++.+.+.
T Consensus 317 ~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~-~~p~~~~~L~~k~~~~H~~l~~~s~~~v~-~~~~SPi~hl~l~ 394 (467)
T KOG1358|consen 317 SFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEE-WNPEIVQPLRAKVAKFHAALSSNSGFIVS-GSPESPIIHLQLE 394 (467)
T ss_pred eeeEeeeeccccceeeeccCchhhhhhHHHHHHHHh-hCcchhhhhhccccccchhhhcCCceEEe-cCcCCceeeeeec
Confidence 644443333445566666656666655544444443 33346677777778888888874 45553 3455777777776
Q ss_pred CCCCC--------HHHHHHHHHHCCceeeeccCC-CCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 322 NKKIT--------GKIAESILESANIICNKNSIP-NDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 322 ~~~~~--------~~~~~~ll~~~GI~v~~~~~p-~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
....+ .+++...+.+ |+.+....+- .....+. +..+|+++++. ++++++.+.+
T Consensus 395 ~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~-~pSiri~~~a~----~seeel~ra~ 456 (467)
T KOG1358|consen 395 RSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPI-PPSIRICVSAG----MSEEELERAA 456 (467)
T ss_pred ccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCC-CCcEEEEEeCC----CCHHHHHHHH
Confidence 53322 3556666666 7777654321 1111111 12499998885 4566665544
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=165.56 Aligned_cols=219 Identities=20% Similarity=0.228 Sum_probs=162.7
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
..|+.+.+|..+++++|+++.+..+.+.+..+...+ .+|+||||+|||++++.+++.+..... |
T Consensus 170 ~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n-~lL~G~pG~GKT~l~~~la~~~~~~~~---------p------ 233 (731)
T TIGR02639 170 VDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNN-PLLVGEPGVGKTAIAEGLALRIAEGKV---------P------ 233 (731)
T ss_pred hhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCc-eEEECCCCCCHHHHHHHHHHHHHhCCC---------c------
Confidence 468888999999999999999999999888877665 699999999999999999999852110 0
Q ss_pred hhhhccCCCccEEEEccCC------C--cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC---------HHHHHHHHH
Q psy13354 459 CVKIDNGCFMDYIEMDAAS------T--RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT---------HHAFNAMLK 521 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~------~--~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~---------~~~~~~Ll~ 521 (1342)
.......++.++.+. . .....++++++++... .+-|++|||+|.+. .+..+.|..
T Consensus 234 ----~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~----~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~ 305 (731)
T TIGR02639 234 ----ENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE----PNAILFIDEIHTIVGAGATSGGSMDASNLLKP 305 (731)
T ss_pred ----hhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhcc----CCeEEEEecHHHHhccCCCCCccHHHHHHHHH
Confidence 000012345555321 1 1123566666665432 34699999999773 235677888
Q ss_pred hhcCCCCcEEEEEEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----cCCCcchhHHHHHHHhcCC
Q psy13354 522 TLEEPPKYIKFILATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----ENIKFETSALNLIATGAQG 592 (1342)
Q Consensus 522 ~Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----~g~~i~~~al~~La~~~~g 592 (1342)
++++ ..+.+|.+||..+ ...+++.+|++.+.+.+|+.++..++|+..... +++.++++++..+++.++.
T Consensus 306 ~l~~--g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r 383 (731)
T TIGR02639 306 ALSS--GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR 383 (731)
T ss_pred HHhC--CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc
Confidence 8876 4688888888632 457799999999999999999999999976654 5678999999999998754
Q ss_pred ------cHHHHHHHHHHHHhhcC--------CCCCHHHHHHHhcc
Q psy13354 593 ------SMRDALSLTDQAINYSS--------EKITLNSMQEMLSI 623 (1342)
Q Consensus 593 ------~lr~a~~~L~kl~~~~~--------~~It~e~V~~~v~~ 623 (1342)
-+++++.+++.+..... ..|+.++|.+++..
T Consensus 384 yi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~ 428 (731)
T TIGR02639 384 YINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAK 428 (731)
T ss_pred ccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHH
Confidence 37889999988765321 22888888887754
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=156.92 Aligned_cols=214 Identities=18% Similarity=0.188 Sum_probs=141.4
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~ 146 (1342)
++....|++ .++++.|.+.+++++ ||+.|+..++.+++.+||+|++....+++...... .+...|+ +++.++
T Consensus 68 ~p~~~~Le~----~lA~l~g~~~av~~s-SG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi--~v~~vd 140 (436)
T PRK07812 68 NPTQDVVEQ----RIAALEGGVAALLLA-SGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGI--EVSFVE 140 (436)
T ss_pred CchHHHHHH----HHHHHhCCCeEEEEc-cHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeE--EEEEEC
Confidence 455556666 999999999888888 99999999999999999999988766655433222 2333454 555443
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
+. .|++.++++++++ +++|++..++++ ...|+++|+++|+++|+++|+|++|+.+.. ..++. .+|++
T Consensus 141 -d~---~d~e~l~~ai~~~-tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~-----~~pl~~GaDiv 210 (436)
T PRK07812 141 -DP---DDLDAWRAAVRPN-TKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYL-----IRPLEHGADIV 210 (436)
T ss_pred -CC---CCHHHHHHhCCCC-CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----CCchhcCCCEE
Confidence 21 2899999888764 455555444444 555999999999999999999999876544 22333 48999
Q ss_pred EecCCccCCCCCe---eEEEEechhH------------------------------HHHhhccCCccccCCcHHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILMKKKYK------------------------------KIINSAVFPGIQGGPLMHVIAAKA 270 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~~~l~------------------------------~~l~~~~~~~~~~~~~~~~~~Aaa 270 (1342)
+.|+||+++|..+ |+++.+.... ...+.. .....|+..+|..+.+.
T Consensus 211 v~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~l~p~~a~l~ 289 (436)
T PRK07812 211 VHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQ-LLRDLGSAISPFNAFLI 289 (436)
T ss_pred EEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHH-HHHhcCCCCCHHHHHHH
Confidence 9999999954432 5555433110 001100 00122333344433322
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 271 VAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 271 ~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
...+ .-+..+.++..+++..+.+.|++.+
T Consensus 290 ---~rgl-~tL~~R~~~~~~nA~~la~~L~~~p 318 (436)
T PRK07812 290 ---AQGL-ETLSLRIERHVANAQRVAEFLEARD 318 (436)
T ss_pred ---hcCc-CcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2222 2566788999999999999999863
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-11 Score=149.93 Aligned_cols=295 Identities=13% Similarity=0.131 Sum_probs=170.9
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC-----
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN----- 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~----- 111 (1342)
.+-.|.+.+++.+.+. .+... . .. ...+...+ +.++++++.+.+.+.++ +||++|+..++.....
T Consensus 55 Gh~~p~v~~ai~~~~~-~~~~~--~-~~-~~~~~~~~----l~~~l~~~~~~~~~~~~-~SGseA~e~Alk~a~~~~~~~ 124 (396)
T PRK04073 55 GHRHPKIIQALKDQAD-KVTLT--S-RA-FHSDQLGP----WYEKVAKLTGKDMVLPM-NTGAEAVETAIKAARRWAYDV 124 (396)
T ss_pred CCCCHHHHHHHHHHHh-hcccc--c-cc-cCCHHHHH----HHHHHHhcCCCCeEEEc-CChHHHHHHHHHHHHHHhhhc
Confidence 3456779999888875 33221 1 11 12233333 44588888776655554 5999999999987631
Q ss_pred ----CC-CEEEEeeccCCccchhhHHhhhCCce----------eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCC
Q psy13354 112 ----PG-DTIMGMSLQEGGHLTHGMMLNMSGKW----------FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASA 176 (1342)
Q Consensus 112 ----pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~----------~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~ 176 (1342)
+| ++|++....+.+..... +...+.. ..+..++.+ |++++++.+.+ +.+++++.+..
T Consensus 125 ~g~~~~r~~ii~~~~~~HG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~-~~~~viiep~~ 196 (396)
T PRK04073 125 KGVEPNKAEIIACEGNFHGRTMAA--VSLSSEEEYKRGFGPMLPGIKKIPYG-----DLEALKAAITP-NTAAFLVEPIQ 196 (396)
T ss_pred cCCCCCCCEEEEECCCcCCCCHHH--HhhcCCcccccCCCCCCCCceEeCCC-----CHHHHHHhccc-CeEEEEEcCcc
Confidence 34 67777654443332111 1111100 011222332 78999988865 45677776654
Q ss_pred CC-c-cc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC--CeeEEEEechh
Q psy13354 177 YS-Q-YI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP--RGGFILMKKKY 245 (1342)
Q Consensus 177 ~~-~-~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp--~GG~iv~~~~l 245 (1342)
++ + .. .+++|.++|++||+++|+||+|.. ....+... .... .+|+++ ++|.++++ +.|++++++++
T Consensus 197 ~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g-~g~~g~~~~~~~~~~~pdi~~--~sK~lg~gg~~ig~~~~~~~i 273 (396)
T PRK04073 197 GEAGINIPPEGFLKAARELCKEENVLFIADEIQTG-LGRTGKLFACDWDNVTPDMYI--LGKALGGGVFPISCVAANRDI 273 (396)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhC-CCcCcHHHHhhhcCCCCCEEE--ecccccCCCCcceEEEEcHHH
Confidence 44 1 11 389999999999999999999872 11111111 1111 257665 57999432 22999999999
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee-CCCCCeEEEEEccCCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS-GGTKSHIILVDLRNKK 324 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~~~~~~v~i~~~~~~ 324 (1342)
++.+........+++ ++...+++.+.++.+.+ +.+.++..++++++.+.|++.+...+. ....+.++++.+..
T Consensus 274 ~~~~~~~~~~~t~~~--~~~~~aaa~aaL~~~~~--~~l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~g~~~~~~~~~-- 347 (396)
T PRK04073 274 LGVFTPGSHGSTFGG--NPLACAVSIAALEVLEE--EKLPERSLELGEYFKEQLKEIDNPMIKEVRGRGLFIGVELNE-- 347 (396)
T ss_pred HhhhcCCCCCCCCCC--CHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHhhcCCcccceecceEEEEEEecc--
Confidence 888865433333333 23334444444444321 134567778889999999876432111 12235677777653
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+.++...+++ +||.+.+. + .+.+|++.+...+.
T Consensus 348 ~~~~~~~~l~~-~Gv~~~~~-------~---~~~iRi~p~l~~t~ 381 (396)
T PRK04073 348 PARPYCEALKE-EGLLCKET-------H---ETVIRFAPPLVITK 381 (396)
T ss_pred hHHHHHHHHHH-CCeEEecC-------C---CCEEEEECCcccCH
Confidence 23456666655 59998742 1 24699987665553
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-11 Score=143.40 Aligned_cols=271 Identities=15% Similarity=0.128 Sum_probs=180.4
Q ss_pred CCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC-CCCEEEEee----ccCCccchh-hHHhhh
Q psy13354 62 KRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN-PGDTIMGMS----LQEGGHLTH-GMMLNM 135 (1342)
Q Consensus 62 ~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~-pGD~Vlv~~----~~~~~~~s~-~~~~~~ 135 (1342)
+..|++.+....|++ .+++++|.+.++.+. +|..+...+++.+++ |||++.+.. +.+..++.. ......
T Consensus 67 DD~Y~gdpSv~~Lee----~vael~G~E~alpth-qGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l 141 (467)
T TIGR02617 67 DEAYSGSRSYYALAE----SVKNIFGYQYTIPTH-QGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQI 141 (467)
T ss_pred CcccccCchHHHHHH----HHHHHhCCceEEECC-CCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHHH
Confidence 344666777778888 888899999877777 889999999999988 788777422 134444443 345566
Q ss_pred CCceeEEEEe--------cCCCCCCCCHHHHHHHHHhcC---CeEEE---EcCCCCC---cccCHHHHHHHHHHcCCEEE
Q psy13354 136 SGKWFNSICY--------GLNKKEKIDYKKVEYLAKKNK---PKLII---AGASAYS---QYIDFERFYHIAKNINSYFM 198 (1342)
Q Consensus 136 ~g~~~~~v~~--------~~~~~~~id~e~Le~~i~~~~---~~liv---~~~s~~~---~~~~l~~I~~la~~~gi~LI 198 (1342)
.|.....+.. +...+|.+|++++++.+++.. ...+. +++..-+ +...++++.++|++||+.++
T Consensus 142 ~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplh 221 (467)
T TIGR02617 142 NGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVV 221 (467)
T ss_pred cCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEE
Confidence 6764443321 122357899999999998632 22222 2222222 33478899999999999999
Q ss_pred EEcccchh-hh--------hcCCCCCC-----CCCCcEEEecCCccCCCCCeeEEEEech----hHHHHhhcc----CCc
Q psy13354 199 VDMAHYAG-LI--------AAGEYPNP-----VPFADFITSTTHKSLRGPRGGFILMKKK----YKKIINSAV----FPG 256 (1342)
Q Consensus 199 vDea~~~g-~~--------~~~~~~~~-----l~~~Divv~S~sK~l~gp~GG~iv~~~~----l~~~l~~~~----~~~ 256 (1342)
.|+|..+- +. +.+..... +..+|.+++|++|.+++|.||+++++++ +.+.++... ..-
T Consensus 222 LDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~ 301 (467)
T TIGR02617 222 MDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMGGLLCFKDDSFFDVYTECRTLCVVQEGFP 301 (467)
T ss_pred EEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcccceEEecchhHHHHHHHHHhhcccccCCc
Confidence 99986542 21 11221111 2457999999999998899999999875 233333321 112
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC-------C-CCHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK-------K-ITGK 328 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~-------~-~~~~ 328 (1342)
++|+.....+.|++..+.+... .++........++|.+.|.+.|++++. .++|-++++.... . ....
T Consensus 302 tYGGlagrd~ea~a~Gl~e~~~---~~yl~~ri~qv~yl~~~L~~~Gvpi~~--~Gghav~iDa~~~lphip~~~fpa~a 376 (467)
T TIGR02617 302 TYGGLEGGAMERLAVGLYDGMN---LDWLAYRINQVQYLVNGLEEIGVVCQQ--AGGHAAFVDAGKLLPHIPADQFPAHA 376 (467)
T ss_pred CcCchhHHHHHHHHhhhhhccc---HHHHHHHHHHHHHHHHHHHhCCCcEEe--cCccEEEEehhhhCCCCChhhCcHHH
Confidence 3455444556666666776654 345666778889999999999999866 7788888875331 1 2356
Q ss_pred HHHHHHHHCCceee
Q psy13354 329 IAESILESANIICN 342 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~ 342 (1342)
++..+..+.||-..
T Consensus 377 l~~~ly~~~GiR~~ 390 (467)
T TIGR02617 377 LACELYKVAGIRAV 390 (467)
T ss_pred HHHHHHHHcCcceE
Confidence 77777788888654
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.6e-12 Score=151.62 Aligned_cols=203 Identities=14% Similarity=0.155 Sum_probs=147.1
Q ss_pred CCccccccchhhHHHHHHHH--------HcC-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 388 SNFNTLIGQNHISKSLINAL--------DKK-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 388 ~~f~~lvGq~~~~~~L~~~l--------~~~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
.+|+++.|++.+++.+.+.. ..| ..+.++|||||||||||++|+++|++++.
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~------------------- 285 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL------------------- 285 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------------------
Confidence 46899999998887776532 122 56788999999999999999999999863
Q ss_pred hhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH------------HHHHHHH
Q psy13354 459 CVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH------------HAFNAML 520 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~------------~~~~~Ll 520 (1342)
.++.++.+. ..+...+++++..+... .+-||+|||+|.+.. ...+.|+
T Consensus 286 ----------~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~----~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL 351 (489)
T CHL00195 286 ----------PLLRLDVGKLFGGIVGESESRMRQMIRIAEAL----SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFI 351 (489)
T ss_pred ----------CEEEEEhHHhcccccChHHHHHHHHHHHHHhc----CCcEEEehhhhhhhccccCCCCchHHHHHHHHHH
Confidence 244444321 11234577777665543 345999999996521 1345677
Q ss_pred HhhcCCCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCC-cchhHHHHHHHhcCC-cHH
Q psy13354 521 KTLEEPPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIK-FETSALNLIATGAQG-SMR 595 (1342)
Q Consensus 521 ~~Le~p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~-i~~~al~~La~~~~g-~lr 595 (1342)
..+++....+++|.+||.++.+++++.+ |+ ..+.++.|+.++..++++.++++.+.. .++..++.|++.+.| +-.
T Consensus 352 ~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGA 431 (489)
T CHL00195 352 TWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGA 431 (489)
T ss_pred HHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHH
Confidence 7888777778888999999999999976 67 789999999999999999999886543 345668888888755 666
Q ss_pred HHHHHHHHHHhhc---CCCCCHHHHHHHhcc
Q psy13354 596 DALSLTDQAINYS---SEKITLNSMQEMLSI 623 (1342)
Q Consensus 596 ~a~~~L~kl~~~~---~~~It~e~V~~~v~~ 623 (1342)
++.+.+..+...+ +..+|.+++..++..
T Consensus 432 dI~~lv~eA~~~A~~~~~~lt~~dl~~a~~~ 462 (489)
T CHL00195 432 EIEQSIIEAMYIAFYEKREFTTDDILLALKQ 462 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCcCHHHHHHHHHh
Confidence 6666666554433 345888888777643
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.4e-12 Score=150.75 Aligned_cols=306 Identities=15% Similarity=0.123 Sum_probs=174.9
Q ss_pred Cceeeeec--C---CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIAS--E---NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~--~---n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
+.|.+.++ . .+-.|.+.+++.+.+...+..+ .. + ..+.. .++.++++++.+.+.+.+ .+||++|+
T Consensus 36 ~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~---~~-~-~~~~~----~~la~~L~~~~~~~~~~f-~~SGseA~ 105 (397)
T TIGR03246 36 EYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIG---NG-Y-TNEPV----LRLAKKLVDATFADKVFF-CNSGAEAN 105 (397)
T ss_pred EEEECCcCHhhccCCCCCHHHHHHHHHHHHhccccc---Cc-c-CCHHH----HHHHHHHHhhCCCCEEEE-eCCcHHHH
Confidence 44655443 2 3345679999888885322111 11 1 12223 335558888877665544 44999999
Q ss_pred HHHHHHcc-------CC-CCEEEEeeccCCccchhhHHhhhCCc----------eeEEEEecCCCCCCCCHHHHHHHHHh
Q psy13354 103 QAVFFSVL-------NP-GDTIMGMSLQEGGHLTHGMMLNMSGK----------WFNSICYGLNKKEKIDYKKVEYLAKK 164 (1342)
Q Consensus 103 ~~al~al~-------~p-GD~Vlv~~~~~~~~~s~~~~~~~~g~----------~~~~v~~~~~~~~~id~e~Le~~i~~ 164 (1342)
..+++... ++ .+.|+..+-.+.+..... +...+. ...+..++.+ |++++++.+.+
T Consensus 106 e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~ 178 (397)
T TIGR03246 106 EAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFT--VSVGGQPKYSQGFAPLPGGIKHAPYN-----DLAAAKALISD 178 (397)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHH--HHhcCCcccccCCCCCCCceEEeCCC-----CHHHHHHHhcc
Confidence 99999761 12 345665554433332111 111110 0012223333 88999998864
Q ss_pred cCCeEEEEcCCCCC------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-C
Q psy13354 165 NKPKLIIAGASAYS------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG-P 234 (1342)
Q Consensus 165 ~~~~liv~~~s~~~------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g-p 234 (1342)
+.++|++.+.+.+ ...++++|.++|++||+++|+||+| .|+...+.... .+. .+|++ +++|.+++ .
T Consensus 179 -~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lggG~ 254 (397)
T TIGR03246 179 -KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGVGRTGELYAYMHYGVTPDIL--TSAKALGGGF 254 (397)
T ss_pred -CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcCCccccchhhhhcCCCCCEE--EeehhhhCCc
Confidence 4566666553322 2336999999999999999999998 44422222211 111 25776 56799942 1
Q ss_pred CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEeeC-CC
Q psy13354 235 RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVSG-GT 311 (1342)
Q Consensus 235 ~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~~-~~ 311 (1342)
+-|++++++++++.+.......++++ +|..++++.+.++... -.++.+++.++.+++.+.|++.+ +.+... ..
T Consensus 255 pigav~~~~~i~~~~~~~~~~~t~~~--~p~~~aaa~a~l~~~~--~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg 330 (397)
T TIGR03246 255 PIGAMLTTTEIAAHLKVGTHGTTYGG--NPLACAVAGKVLDLVN--TPELLAGVKQRHDLFVDGLEKINARYNVFSEIRG 330 (397)
T ss_pred ceeEEEEcHHHHHhccCCCcCCCCCC--CHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeec
Confidence 22889999999888865433344432 3344555555555543 13467888899999999998754 221111 11
Q ss_pred CCeEEEEEccCC--CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 312 KSHIILVDLRNK--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 312 ~~~~v~i~~~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+.++.+.+... .....+...+++ +||++.+. + .+.+|++.+..++.
T Consensus 331 ~G~~~~i~~~~~~~~~~~~~~~~l~~-~Gv~~~~~---g-------~~~lR~~p~~~~t~ 379 (397)
T TIGR03246 331 KGLLIGAVLTEAYQGKAKQFVNAAAE-EGVIALIA---G-------PNVVRFAPSLVISD 379 (397)
T ss_pred CceEEEEEEcCchhhHHHHHHHHHHH-CCeEEeec---C-------CCEEEEeCCCCCCH
Confidence 234444544321 123455665555 59998752 1 24699987776654
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=135.64 Aligned_cols=160 Identities=25% Similarity=0.349 Sum_probs=113.5
Q ss_pred HHHHHHHHh--CCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCC--C
Q psy13354 78 AINRLKKIF--NAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEK--I 153 (1342)
Q Consensus 78 ~~~~la~~~--g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~--i 153 (1342)
+++.+++++ +.+.+++++ +|+.|+..+++++..++++|++....++++.. ......|..+.. ++.+.++. .
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~-~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~g~~~~~--v~~~~~~~~~~ 79 (170)
T cd01494 5 LEEKLARLLQPGNDKAVFVP-SGTGANEAALLALLGPGDEVIVDANGHGSRYW--VAAELAGAKPVP--VPVDDAGYGGL 79 (170)
T ss_pred HHHHHHHHcCCCCCcEEEeC-CcHHHHHHHHHHhCCCCCEEEEeecccceehh--hHHHhcCCEEEE--eccCCCCccch
Confidence 455899999 666777777 99999999999999889999988866665542 344556664444 45443332 2
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccC
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSL 231 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l 231 (1342)
+.+.+++.....+++++++++++++ ...++++|+++|+++|+++|+|++|..+.............+|++++|+||++
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~~ 159 (170)
T cd01494 80 DVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNL 159 (170)
T ss_pred hhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEccccc
Confidence 3335555555556788887766655 33478999999999999999999998776643221122234799999999999
Q ss_pred CCCCeeEEEEe
Q psy13354 232 RGPRGGFILMK 242 (1342)
Q Consensus 232 ~gp~GG~iv~~ 242 (1342)
+++.+|+++++
T Consensus 160 ~~~~~G~l~~~ 170 (170)
T cd01494 160 GGEGGGVVIVK 170 (170)
T ss_pred CCCceEEEEeC
Confidence 66444998764
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-12 Score=154.51 Aligned_cols=215 Identities=20% Similarity=0.204 Sum_probs=143.5
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++....|++ .++++.|.+++++++ ||+.|+..++.+++++||+|+++...|++.+... ..+...|+ +++.+
T Consensus 62 ~~p~~~~Le~----~lA~leg~~~al~~~-sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv--~v~~v 134 (431)
T PRK08248 62 MNPTTDVFEK----RIAALEGGIGALAVS-SGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGI--TVKFV 134 (431)
T ss_pred CCchHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCE--EEEEE
Confidence 3555566666 899999988888877 9999999999999999999998887776554433 33455666 45555
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.. |+++++++++++ +++|+++.+++| ...|+++|+++|+++|+++|+|++++.+.. ..+++ .+|+
T Consensus 135 d~~-----d~e~l~~ai~~~-tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~-----~~pl~~gaDi 203 (431)
T PRK08248 135 DPS-----DPENFEAAITDK-TKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYL-----LRPIEHGADI 203 (431)
T ss_pred CCC-----CHHHHHHhcCCC-CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcccc-----CChhHcCCCE
Confidence 543 899999988764 556666555445 445999999999999999999999864322 12223 4799
Q ss_pred EEecCCccCCCCC---eeEEEEechhH-----------------------HHH------hh-c-cCCccccCCcHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKYK-----------------------KII------NS-A-VFPGIQGGPLMHVIAA 268 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l~-----------------------~~l------~~-~-~~~~~~~~~~~~~~~A 268 (1342)
++.|++|+++|+. ||+++.+.+.. +.+ .. . ......|...+|..+.
T Consensus 204 vv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ 283 (431)
T PRK08248 204 VVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSF 283 (431)
T ss_pred EEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHH
Confidence 9999999995543 26555443211 000 00 0 0011223333444333
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 269 KAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 269 aa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
+. .+-+ .-+..+.++..+++..+.+.|++.+
T Consensus 284 l~---~rgl-~tl~~R~~~~~~nA~~la~~L~~~p 314 (431)
T PRK08248 284 LL---LQGL-ETLHLRMERHSENALAVAKFLEEHE 314 (431)
T ss_pred HH---hcCc-CcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22 2222 2455678899999999999999863
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-12 Score=140.34 Aligned_cols=164 Identities=21% Similarity=0.220 Sum_probs=127.6
Q ss_pred CCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhC
Q psy13354 58 GYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMS 136 (1342)
Q Consensus 58 g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~ 136 (1342)
|+..++ .+++..+.+|+ +++.+-|.-.++.+. ||+.|+..++..+.++||+|+.++.-|++....... +...
T Consensus 53 G~iYsR--i~NPT~~vlE~----RiAaLEGG~aa~a~a-SG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~ 125 (426)
T COG2873 53 GNIYTR--IMNPTTDVLEE----RIAALEGGVAALAVA-SGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRL 125 (426)
T ss_pred Cceeee--ccCchHHHHHH----HHHHhhcchhhhhhc-cchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhc
Confidence 444333 35677778888 899888877777777 999999999999999999999998888887765543 4677
Q ss_pred CceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC
Q psy13354 137 GKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN 215 (1342)
Q Consensus 137 g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~ 215 (1342)
|+.+.++ +.+ |++.+++++.++++.+++-+-+|+. ...|+++|+++||++|+++|||...+...+ ..
T Consensus 126 Gi~v~fv--d~~-----d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl-----~r 193 (426)
T COG2873 126 GIEVRFV--DPD-----DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYL-----CR 193 (426)
T ss_pred CcEEEEe--CCC-----CHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCccee-----cc
Confidence 7755544 544 8999999999987777776666666 666999999999999999999998654422 33
Q ss_pred CCC-CCcEEEecCCccCCCCCe----eEEEE
Q psy13354 216 PVP-FADFITSTTHKSLRGPRG----GFILM 241 (1342)
Q Consensus 216 ~l~-~~Divv~S~sK~l~gp~G----G~iv~ 241 (1342)
|++ .+|+|+.|.+||+ |..| |.|+-
T Consensus 194 P~~hGADIVvHS~TK~i-gGhGt~iGG~iVD 223 (426)
T COG2873 194 PIEHGADIVVHSATKYI-GGHGTAIGGVIVD 223 (426)
T ss_pred hhhcCCCEEEEeecccc-cCCccccceEEEe
Confidence 555 4899999999999 5544 66663
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-12 Score=141.48 Aligned_cols=200 Identities=16% Similarity=0.219 Sum_probs=136.6
Q ss_pred Cccccc-cch-hhHHHHHHHHHc--CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhcc
Q psy13354 389 NFNTLI-GQN-HISKSLINALDK--KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDN 464 (1342)
Q Consensus 389 ~f~~lv-Gq~-~~~~~L~~~l~~--~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~ 464 (1342)
+|++.+ |.. .+++.+.+.... +...+.++|+|++|+|||++++++++++...+
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~----------------------- 73 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRG----------------------- 73 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC-----------------------
Confidence 788865 432 222333333222 22235689999999999999999998875211
Q ss_pred CCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC--HHHHHHHHHhhcCCC-CcEEEEEEeCCCC-
Q psy13354 465 GCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--HHAFNAMLKTLEEPP-KYIKFILATTEPQ- 540 (1342)
Q Consensus 465 ~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--~~~~~~Ll~~Le~p~-~~~vlIl~t~~~~- 540 (1342)
..+..++..... ....++++... +..+++|||++.+. ....+.|+.+++.-. ....+|++++...
T Consensus 74 ---~~v~y~~~~~~~--~~~~~~~~~~~------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 74 ---EPAVYLPLAELL--DRGPELLDNLE------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred ---CcEEEeeHHHHH--hhhHHHHHhhh------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 112223221100 01122222222 23489999999874 234566777775422 2344666665433
Q ss_pred ---CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc---CCC
Q psy13354 541 ---KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS---SEK 611 (1342)
Q Consensus 541 ---kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~---~~~ 611 (1342)
...+.|.||+ .++.+.+++.+++..+++.++...|+.++++++++|++.+++|+|.+.+.++++..++ +.+
T Consensus 143 ~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~ 222 (234)
T PRK05642 143 ELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRK 222 (234)
T ss_pred HcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 3357999998 8999999999999999998898899999999999999999999999999999876543 456
Q ss_pred CCHHHHHHHhc
Q psy13354 612 ITLNSMQEMLS 622 (1342)
Q Consensus 612 It~e~V~~~v~ 622 (1342)
||...+++++.
T Consensus 223 it~~~~~~~L~ 233 (234)
T PRK05642 223 LTIPFLKETLG 233 (234)
T ss_pred CCHHHHHHHhc
Confidence 99999998874
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-12 Score=156.98 Aligned_cols=205 Identities=20% Similarity=0.269 Sum_probs=148.1
Q ss_pred cCCCCccccccchhhHHHHHHHHH-----------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALD-----------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~-----------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
....+|++++|++++++.+.+.+. ....+.++|||||||||||++++++++.+...
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~------------- 115 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP------------- 115 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------------
Confidence 345689999999999988877664 24667789999999999999999999987631
Q ss_pred CCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-------------- 513 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-------------- 513 (1342)
++.++.+. ..+...++++++.+... .+.||+|||+|.+..
T Consensus 116 ----------------~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~----~p~Il~iDEid~l~~~r~~~~~~~~~~~~ 175 (495)
T TIGR01241 116 ----------------FFSISGSDFVEMFVGVGASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDERE 175 (495)
T ss_pred ----------------eeeccHHHHHHHHhcccHHHHHHHHHHHHhc----CCCEEEEechhhhhhccccCcCCccHHHH
Confidence 22222211 12334677777766432 345999999998732
Q ss_pred HHHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 514 HAFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 514 ~~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
...+.|+..++.. ...+++|.+||.++.+.+++.+ |+ ..+.++.|+.++..++++.+++..... ++..+..+++
T Consensus 176 ~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~ 254 (495)
T TIGR01241 176 QTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVAR 254 (495)
T ss_pred HHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHH
Confidence 2345666666543 3467888899999999999987 55 789999999999999999888765543 3445778888
Q ss_pred hcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 589 GAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
.+.| +.+++.+++..+...+ ...|+.+++++++..
T Consensus 255 ~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~ 294 (495)
T TIGR01241 255 RTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDR 294 (495)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 8765 6677777777654432 234999999988754
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >PRK08485 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.1e-13 Score=137.00 Aligned_cols=129 Identities=27% Similarity=0.319 Sum_probs=117.3
Q ss_pred CCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEE---
Q psy13354 476 ASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQ--- 552 (1342)
Q Consensus 476 ~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~--- 552 (1342)
....++++++++++.+...|. ..+ ++|+++|.|+.+++|+|+++||+||++++||++|+.+.++++||+|||+.
T Consensus 34 ~~~i~Vd~iReii~~~~~~~~--~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~ 110 (206)
T PRK08485 34 KEEFKIEDAKEVIAEAYIAES--EEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKR 110 (206)
T ss_pred CCCCCHHHHHHHHHHHhhCCC--CcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccc
Confidence 336889999999999988885 344 45789999999999999999999999999999999999999999999986
Q ss_pred ----------EEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q psy13354 553 ----------FNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS 608 (1342)
Q Consensus 553 ----------i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~ 608 (1342)
++|.+++.+++.+++.+ ++++++...+++++.+++.+.|++|+++++.++.+.|.
T Consensus 111 ~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l~~f 175 (206)
T PRK08485 111 KQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEELEYF 175 (206)
T ss_pred cccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence 77899999999999998 78889888999999999999999999999999888775
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-11 Score=144.58 Aligned_cols=294 Identities=15% Similarity=0.142 Sum_probs=168.9
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCC-CE
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPG-DT 115 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pG-D~ 115 (1342)
..+|.+.+++.+.+.+... .... ...+++.++.+++.+..+.+. +++++||++|+..+++.. ..+| +.
T Consensus 45 ~~~p~v~~a~~~~~~~~~~---~~~~------~~~~~~~~la~~l~~~~~~~~-~~~~~sG~~a~~~A~~~a~~~~g~~~ 114 (377)
T PRK02936 45 HCHPTVTKAVQEQLDDIWH---VSNL------FTNSLQEEVASLLAENSAGDL-VFFCNSGAEANEAALKLARKHTGKSK 114 (377)
T ss_pred CCCHHHHHHHHHHHHhccc---cccc------cCCHHHHHHHHHHHhcCCCCE-EEEeCCcHHHHHHHHHHHHHhcCCCe
Confidence 4556799999988853211 1111 113566666778877766554 455559999999999864 2244 56
Q ss_pred EEEeeccCCccchhhHHhhhCCce----------eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC------Cc
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKW----------FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY------SQ 179 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~----------~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~------~~ 179 (1342)
|++.+..+.+....... ..+.. .....++.+ |++++++.+.+ +.+++++.+... +.
T Consensus 115 vi~~~~~~Hg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~-~~~~ii~e~i~~~~G~~~~~ 186 (377)
T PRK02936 115 IVTFEQSFHGRTFGTMS--ATGQEKIKEGFGPLLPGFTHVPFN-----DIKALKEVMNE-EVAAVMLEVVQGEGGVIPAD 186 (377)
T ss_pred EEEECCCcCCCcHHhhh--ccCCccccccCCCCCCCceEeCCC-----CHHHHHHhccC-CeEEEEEecccCCCCCccCC
Confidence 77665444333221111 11110 011122222 78999988864 355666544221 13
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-CCeeEEEEechhHHHHhhccCC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG-PRGGFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g-p~GG~iv~~~~l~~~l~~~~~~ 255 (1342)
..++++|.++|++||+++|+||+|. |....+.... ... ..|++ ++||++++ ..+|++++++++++.+......
T Consensus 187 ~~~l~~l~~l~~~~~~~lI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~ig~v~~~~~~~~~~~~~~~~ 263 (377)
T PRK02936 187 PAFLQEVQTLCKKFGALLIIDEVQT-GIGRTGTLFAYEQFGLDPDIV--TVAKGLGNGIPVGAMIGKKELGTAFGPGSHG 263 (377)
T ss_pred HHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhhCCCCcEE--EEcccccCCCccEEEEEcHHHHhhccCCCCC
Confidence 3469999999999999999999985 3322222111 111 14654 67899942 1349999999998887654333
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeC-CCCCeEEEEEccCCCCCHHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSG-GTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~-~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
..++ .+...++++. +..+... .++..+++.++.+++++.|.+. ++..... ...+.++|+.++.. ...+..
T Consensus 264 ~t~~-~~~~~~aaa~-a~l~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~---~~~~~~ 336 (377)
T PRK02936 264 STFG-GNPLAMAAAK-EVLQVIK--QPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTEE---VAPVIE 336 (377)
T ss_pred CCCC-CCHHHHHHHH-HHHHHHH--hccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecch---HHHHHH
Confidence 3333 2333444444 4444431 1234567777788888877763 2222110 12457889888653 334444
Q ss_pred HHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+.++||.+.+. + .+.+|++++..++.
T Consensus 337 ~l~~~gv~v~~~-------g---~~~lRi~p~~~~~~ 363 (377)
T PRK02936 337 QLREEGLLVLSA-------G---PNVIRLLPPLVVTK 363 (377)
T ss_pred HHHHCCeEEecC-------C---CCEEEEECCcccCH
Confidence 556679998752 1 24699987665553
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-12 Score=145.16 Aligned_cols=188 Identities=18% Similarity=0.213 Sum_probs=136.4
Q ss_pred cccccchhhHHHHHHHHH----------cC----CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 391 NTLIGQNHISKSLINALD----------KK----RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~----------~~----~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
++++|++.+++.+.+.+. .| .....++|+||||||||++|+.+++.+...+....
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~----------- 90 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRK----------- 90 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCccc-----------
Confidence 579999999988766432 11 12336899999999999999999998863221100
Q ss_pred cchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccC---------CHHHHHHHHH
Q psy13354 457 SVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHML---------THHAFNAMLK 521 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L---------~~~~~~~Ll~ 521 (1342)
..++.++.+. ......++++++.+ ..-+++|||++.| +.+.++.|++
T Consensus 91 -----------~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a-------~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~ 152 (284)
T TIGR02880 91 -----------GHLVSVTRDDLVGQYIGHTAPKTKEILKRA-------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQ 152 (284)
T ss_pred -----------ceEEEecHHHHhHhhcccchHHHHHHHHHc-------cCcEEEEechhhhccCCCccchHHHHHHHHHH
Confidence 0122222210 01112344555443 1249999999977 3456789999
Q ss_pred hhcCCCCcEEEEEEeCCC--CC---ChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh------
Q psy13354 522 TLEEPPKYIKFILATTEP--QK---IPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG------ 589 (1342)
Q Consensus 522 ~Le~p~~~~vlIl~t~~~--~k---l~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~------ 589 (1342)
.+++...++++|++++.. +. +.+.+.+|+ ..++|++++.+++..++...+++.+..+++++.+.+.++
T Consensus 153 ~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~ 232 (284)
T TIGR02880 153 VMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRT 232 (284)
T ss_pred HHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCC
Confidence 999888888888876543 22 347899999 789999999999999999999999999999999998876
Q ss_pred --cCCcHHHHHHHHHHHHhh
Q psy13354 590 --AQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 590 --~~g~lr~a~~~L~kl~~~ 607 (1342)
.-||.|.+.+.++++...
T Consensus 233 ~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 233 QPHFANARSIRNAIDRARLR 252 (284)
T ss_pred CCCCChHHHHHHHHHHHHHH
Confidence 359999999999987655
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-11 Score=139.90 Aligned_cols=309 Identities=16% Similarity=0.145 Sum_probs=187.5
Q ss_pred ccCceeeeecC-----CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHH
Q psy13354 26 QNNNIELIASE-----NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQ 100 (1342)
Q Consensus 26 ~~~~i~l~a~~-----n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~ 100 (1342)
.+++|.+.++- .-..|.+.+++.+....-+. .+..++ .+...++.+++.+..+..+-++|++||++
T Consensus 41 G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h---~sn~~~------~~~~~~la~~L~~~s~~~d~vff~NSGaE 111 (404)
T COG4992 41 GREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWH---VSNLFY------NEPQAELAEKLVELSPFADRVFFCNSGAE 111 (404)
T ss_pred CCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhh---cccccC------ChHHHHHHHHHHhhCccccEEEEcCCcHH
Confidence 34567665543 23567799998887653332 111222 23445566689988872245566669999
Q ss_pred HHHHHHHHcc---C-CC-CEEEEeeccCCccchh-----hHH--hhhCC-ceeEEEEecCCCCCCCCHHHHHHHHHhcCC
Q psy13354 101 ANQAVFFSVL---N-PG-DTIMGMSLQEGGHLTH-----GMM--LNMSG-KWFNSICYGLNKKEKIDYKKVEYLAKKNKP 167 (1342)
Q Consensus 101 A~~~al~al~---~-pG-D~Vlv~~~~~~~~~s~-----~~~--~~~~g-~~~~~v~~~~~~~~~id~e~Le~~i~~~~~ 167 (1342)
|+++++...- . |+ .+|+.....+.++-.. +.. -...+ ....+..+|++ |++++++++.+++.
T Consensus 112 A~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-----Di~al~~ai~~~ta 186 (404)
T COG4992 112 ANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-----DIEALEAAIDEDTA 186 (404)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-----CHHHHHHHhccCeE
Confidence 9999998762 2 22 3666644433322111 111 00000 00112223444 99999999998544
Q ss_pred eEEEEcC-----CCCC-cccCHHHHHHHHHHcCCEEEEEcccch----hhhhcCCCCCCCCCCcEEEecCCccCCCCCe-
Q psy13354 168 KLIIAGA-----SAYS-QYIDFERFYHIAKNINSYFMVDMAHYA----GLIAAGEYPNPVPFADFITSTTHKSLRGPRG- 236 (1342)
Q Consensus 168 ~liv~~~-----s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~----g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G- 236 (1342)
+ |++-+ +..+ ....++++.++|++||+++|.||+|.- |.+.+..+.+.. +||++.+ |.++|..-
T Consensus 187 A-vivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~--PDI~tla--K~LgGG~Pi 261 (404)
T COG4992 187 A-VIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVE--PDILTLA--KALGGGFPI 261 (404)
T ss_pred E-EEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCC--CCEEEee--ccccCCccc
Confidence 4 44422 2222 334799999999999999999999862 222222222222 5888655 99965333
Q ss_pred eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeC-CCCC
Q psy13354 237 GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSG-GTKS 313 (1342)
Q Consensus 237 G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~-~~~~ 313 (1342)
|++++++.+.+.+....+..++|+ +|..+|++.+..+.+.+ +...++..+...++.+.|.++ .++++.. ..-+
T Consensus 262 gA~la~~~~~~~~~~G~HgSTfGG--NpLacAv~~a~l~~l~~--e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~G 337 (404)
T COG4992 262 GAMLATEEIASAFTPGDHGSTFGG--NPLACAVALAVLEVLLE--EGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRG 337 (404)
T ss_pred eeeEEchhhhhcCCCCcccCCCCc--CHHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecce
Confidence 888887777788888777777776 67777777777777642 345677788888888888874 2332221 1235
Q ss_pred eEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 314 HIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 314 ~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.++-+.+.......++...+.++ |+++.+. +...+|+...-..+
T Consensus 338 LmiGiel~~~~~a~~~~~~~~~~-gvL~~~a----------~~~ViR~~PpL~i~ 381 (404)
T COG4992 338 LMIGIELKEPYRARDIVRALREE-GVLVLPA----------GPNVIRFLPPLVIT 381 (404)
T ss_pred eEEEEEecCcccHHHHHHHHHHC-CeEEecC----------CCCeEEecCCccCC
Confidence 56667776654345677777665 9998743 13458986555433
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-11 Score=145.80 Aligned_cols=294 Identities=14% Similarity=0.114 Sum_probs=167.2
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL-------- 110 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~-------- 110 (1342)
..|.+.+++.+.+. .+.. .+. .+ .. +....+++.++++.+.+.+. +++||++|+..++..+.
T Consensus 48 ~~p~v~~a~~~~~~-~~~~--~~~-~~-~~----~~~~~~~~~l~~~~~~~~~~-~~~SGs~A~e~al~~~~~~~~~~~~ 117 (400)
T PTZ00125 48 CHPKILAALINQAQ-KLTL--TSR-AF-YN----DVLGLAEKYITDLFGYDKVL-PMNSGAEAGETALKFARKWGYEVKG 117 (400)
T ss_pred CCHHHHHHHHHHHH-hccc--ccc-cc-cC----HHHHHHHHHHHhCCCCCEEE-EeCCcHHHHHHHHHHHHHHHHhccC
Confidence 57889999888874 3322 111 11 12 23344555888888776555 45599999999998773
Q ss_pred --CCCCEEEEeeccCCccchhhHHhhhCCce-e---------EEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 111 --NPGDTIMGMSLQEGGHLTHGMMLNMSGKW-F---------NSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 111 --~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~-~---------~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
..++.|++.+..+.+...... ...+.. . ....+++ .|++++++.+...+.++|++.+..++
T Consensus 118 ~~~~~~~vl~~~~~~Hg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~v~~ep~~~~ 190 (400)
T PTZ00125 118 IPENQAKIIFCNGNFSGRTIGAC--SASTDPKCYNNFGPFVPGFELVDY-----NDVEALEKLLQDPNVAAFIVEPIQGE 190 (400)
T ss_pred CCCCCCeEEEECCCcCCccHHHH--hhcCCcchhccCCCCCCCceEeCC-----CCHHHHHHHhCCCCeEEEEEcCccCC
Confidence 134677765544333321111 111100 0 0111222 28999999886445677777554333
Q ss_pred --cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC-C-CCC-CCcEEEecCCccCCCCC-e-eEEEEechhHH
Q psy13354 179 --QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP-N-PVP-FADFITSTTHKSLRGPR-G-GFILMKKKYKK 247 (1342)
Q Consensus 179 --~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~-~-~l~-~~Divv~S~sK~l~gp~-G-G~iv~~~~l~~ 247 (1342)
...+ +++|.++|++||+++|+||+|. |....+... . ... .+|+++ ++|+++++. . |++++++++++
T Consensus 191 ~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~-g~g~~G~~~~~~~~~~~pd~~~--~sK~l~~g~~~ig~v~~~~~~~~ 267 (400)
T PTZ00125 191 AGVIVPDDGYLKQVYELCKKYNVLLIVDEIQT-GLGRTGKLLAHDHEGVKPDIVL--LGKALSGGLYPISAVLANDDVML 267 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhhHHHhcCCCCCEEE--EcccccCCCcCcEEEEEcHHHHh
Confidence 2233 9999999999999999999985 221111111 0 011 247775 469995432 3 89999999988
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEEEEEccCC
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
.+........++. ++...+++.+..+.+.+. ...++..+..+++.+.|.+. ++..... ..+.++++.++..
T Consensus 268 ~~~~~~~~~t~~~--~~~~~~aa~~~l~~i~~~--~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-~~g~~~~v~~~~~ 342 (400)
T PTZ00125 268 VIKPGEHGSTYGG--NPLACAVAVEALEVLKEE--KLAENAQRLGEVFRDGLKELLKKSPWVKEIR-GKGLLNAIVFDHS 342 (400)
T ss_pred hccCCCCCCCCCc--CHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-cccEEEEEEEccC
Confidence 8765333333332 233333333433333211 23456666777777777663 3221111 2456667766532
Q ss_pred --CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 324 --KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 324 --~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
....++...++ ++||.+.+. . ...+|++.+...+
T Consensus 343 ~~~~~~~~~~~l~-~~Gv~v~~~----~------~~~lRi~~~~~~~ 378 (400)
T PTZ00125 343 DGVNAWDLCLKLK-ENGLLAKPT----H------DNIIRFAPPLVIT 378 (400)
T ss_pred cchHHHHHHHHHH-HCCeEEeec----C------CCEEEEECCccCC
Confidence 22345666666 459999753 1 2469999875444
|
|
| >PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-12 Score=129.92 Aligned_cols=133 Identities=26% Similarity=0.370 Sum_probs=114.5
Q ss_pred CCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccc---CCchh
Q psy13354 612 ITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILI---KDSPN 688 (1342)
Q Consensus 612 It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~---~~~~~ 688 (1342)
||.++|.+++|.+..+.++++++++.++|...++..++++..+|.+|..++..|..+||+++.+|..++... ...+.
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~~~~~~ 80 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDKSNLLELSEEE 80 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG--CTTT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchhhcccCCHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999874222 34556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccccc
Q psy13354 689 YNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHNH 744 (1342)
Q Consensus 689 ~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~~ 744 (1342)
.+.+.+++++||.++|.++++.+.++..++|.+.+|++.+|+.++++|.+.++++.
T Consensus 81 ~~~~~~~a~~~~~~~l~~~~~~l~~~~~~lr~s~~pr~~lE~~llrl~~~~~~~~~ 136 (143)
T PF12169_consen 81 EEKLKELAKKFSPERLQRILQILLEAENELRYSSNPRILLEMALLRLCQLKSLPSP 136 (143)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhcccc
Confidence 77899999999999999999999999999999999999999999999998777543
|
It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G. |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=149.70 Aligned_cols=211 Identities=12% Similarity=0.209 Sum_probs=142.1
Q ss_pred CCCccccc-cc--hhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 387 PSNFNTLI-GQ--NHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 387 p~~f~~lv-Gq--~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
+.+|++.+ |. +.+...+...... |...+.++|||++|+|||++++++++.+....+.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~------------------- 171 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSD------------------- 171 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCC-------------------
Confidence 46899965 43 3344455554443 3334568999999999999999999987531111
Q ss_pred ccCCCccEEEEccCCCc--CHHHHH---HHHHHHhhcCccCCceEEEeccCccCC--HHHHHHHHHhhcCCC-CcEEEEE
Q psy13354 463 DNGCFMDYIEMDAASTR--GINEMA---QLLEQTIYAPINARYKIYVIDEVHMLT--HHAFNAMLKTLEEPP-KYIKFIL 534 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~~~~--~~~~i~---~ii~~~~~~p~~~~~rvviIDE~~~L~--~~~~~~Ll~~Le~p~-~~~vlIl 534 (1342)
..+..+++.... -...+. +.++.+. .......+++|||++.+. ...++.|..+++.-. ..-.+|+
T Consensus 172 -----~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~--~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIl 244 (450)
T PRK14087 172 -----LKVSYMSGDEFARKAVDILQKTHKEIEQFK--NEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFF 244 (450)
T ss_pred -----CeEEEEEHHHHHHHHHHHHHHhhhHHHHHH--HHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEE
Confidence 112223221100 000111 0111110 112345699999999886 445566666554321 1224677
Q ss_pred EeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCC--CcchhHHHHHHHhcCCcHHHHHHHHHHHH
Q psy13354 535 ATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENI--KFETSALNLIATGAQGSMRDALSLTDQAI 605 (1342)
Q Consensus 535 ~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~--~i~~~al~~La~~~~g~lr~a~~~L~kl~ 605 (1342)
+++.+. .+.+.|.||+ .++++.+|+.+++.++|+++++..|. .++++++++|++.++||+|.+.+.|+++.
T Consensus 245 tsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~ 324 (450)
T PRK14087 245 SSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLN 324 (450)
T ss_pred ECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 777654 3457889987 68999999999999999999999885 69999999999999999999999999987
Q ss_pred hhc--C---CCCCHHHHHHHhcc
Q psy13354 606 NYS--S---EKITLNSMQEMLSI 623 (1342)
Q Consensus 606 ~~~--~---~~It~e~V~~~v~~ 623 (1342)
.++ . ..||.+.|++++..
T Consensus 325 ~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 325 FWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHhcccCCCCCCHHHHHHHHhh
Confidence 654 2 45999999988864
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-11 Score=146.65 Aligned_cols=295 Identities=15% Similarity=0.113 Sum_probs=166.6
Q ss_pred HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCC-------
Q psy13354 41 LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPG------- 113 (1342)
Q Consensus 41 ~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pG------- 113 (1342)
|.+.+++.+.+.. .. ..... |. .++..+++++++++.|.+.++++ +||++|+..+++++..++
T Consensus 58 p~v~~a~~~~~~~-~~--~~~~~-~~-----~~~~~~la~~l~~~~~~~~v~~~-~gg~eA~~~al~~a~~~~~~~~~~~ 127 (396)
T PRK02627 58 PKLVEAIQEQAAK-LI--HTSNL-YY-----IEPQEELAEKLVELSGMDKVFFC-NSGAEANEAAIKLARKYGHKKGIEK 127 (396)
T ss_pred HHHHHHHHHHHhh-cc--ccccc-cC-----CHHHHHHHHHHHhhcCCCEEEEC-CCcHHHHHHHHHHHHHHhcccCCCC
Confidence 5688888887742 21 11111 11 25566677788888887655555 499999999999775433
Q ss_pred CEEEEeeccCCccchhhHHhhhCCcee-EEEEecCCCCC----CCCHHHHHHHHHhcCCeEEEEcCCCCC------cccC
Q psy13354 114 DTIMGMSLQEGGHLTHGMMLNMSGKWF-NSICYGLNKKE----KIDYKKVEYLAKKNKPKLIIAGASAYS------QYID 182 (1342)
Q Consensus 114 D~Vlv~~~~~~~~~s~~~~~~~~g~~~-~~v~~~~~~~~----~id~e~Le~~i~~~~~~liv~~~s~~~------~~~~ 182 (1342)
++|++....+.++...... ..+... .....+...+. ..|++++++.+.+ +++++++.+.+++ ....
T Consensus 128 ~~ii~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~vii~p~~~~~G~~~~~~~~ 204 (396)
T PRK02627 128 PEIITAENSFHGRTLATLS--ATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITD-KTAAVMLEPIQGEGGVNPADKEY 204 (396)
T ss_pred CeEEEECCCcCcccHHHHH--hcCCccccccCCCCCCCceEeCCCCHHHHHHhcCC-CeEEEEEecccCCCCCccCCHHH
Confidence 5677665544333222111 111100 00001111111 1288999998854 4566666554332 2236
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC-CeeEEEEechhHHHHhhccCCccc
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP-RGGFILMKKKYKKIINSAVFPGIQ 258 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~~l~~~~~~~~~ 258 (1342)
+++|.++|++||++||+||+|. |....+.... ... ..|++ ++||.+++. .-|++++++++++.+........+
T Consensus 205 l~~l~~l~~~~~~~lI~DE~~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~~~~G~rig~~~~~~~~~~~~~~~~~~~t~ 281 (396)
T PRK02627 205 LQALRELCDENGILLILDEVQT-GMGRTGKLFAYQHYGIEPDIM--TLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTF 281 (396)
T ss_pred HHHHHHHHHHcCCEEEEechhc-CCCccCceeeehhcCCCCCEE--EEcchhhCCcccEEEEEcHHHHhccCCCCCCCCC
Confidence 9999999999999999999987 2211222111 111 14654 578999421 129999999888877653333333
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEee-CCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVS-GGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~-~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
+. ++...+++.+..+.... ++..+++.++.+++.+.|.+.. +.... ....+.++|+.+. ....+++..+++
T Consensus 282 ~~--~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~ 355 (396)
T PRK02627 282 GG--NPLACAAALAVIEIIEE--EGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELD--RPAAEIVKKALE 355 (396)
T ss_pred CC--CHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEec--CcHHHHHHHHHH
Confidence 32 33333344444444321 2345666666777777665531 11111 1234567888773 234567777776
Q ss_pred HCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+ ||.+.+.. .+++|++++..++
T Consensus 356 ~-Gv~v~~~~----------~~~lRi~~~~~~~ 377 (396)
T PRK02627 356 K-GLLINVTG----------DNVLRLLPPLIIS 377 (396)
T ss_pred C-CeEEeecC----------CCEEEEECCcccC
Confidence 6 99998641 2458998765444
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-11 Score=126.85 Aligned_cols=261 Identities=16% Similarity=0.191 Sum_probs=168.5
Q ss_pred CceeeeecC--CCCcHHHHHHHhHHHHhccccCCCCCCcc-------CCcchHHHHHHHHHHHHHHHhCCCCceEecCCH
Q psy13354 28 NNIELIASE--NYTSLAVMEAQGTLLTNKYAEGYPGKRYY-------GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~--n~l~~~v~eal~~~l~~~~~~g~~~~~~~-------~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sG 98 (1342)
..|++.+-+ ..++++.+.|+.+. +.||+-..+. ...+....+.+ .+++++|.+.+-++. ++
T Consensus 16 ~~iNv~PiQrGGiLt~eArkal~E~-----gDGYSvCD~C~~Grldei~kPpI~~F~~----dlaeFlg~D~~R~t~-GA 85 (382)
T COG1103 16 GFINVNPIQRGGILTEEARKALLEW-----GDGYSVCDFCLEGRLDEITKPPIKDFLE----DLAEFLGMDEVRVTA-GA 85 (382)
T ss_pred CccccChhhccCcCCHHHHHHHHHh-----cCCcchhhhhccCccccccCCcHHHHHH----HHHHHhCCceeeecc-cc
Confidence 455554443 56777777775543 3455443332 12232333333 599999999777776 88
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---c---CCeEEEE
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---N---KPKLIIA 172 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~---~~~liv~ 172 (1342)
-+|-++++.+++.+||.|++ ...+|++..-+.++.|.++..++-.--.++.++++...+.+.+ . .|.+.++
T Consensus 86 Re~KfavMhal~~~gd~vV~---D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lall 162 (382)
T COG1103 86 REAKFAVMHALCKEGDWVVV---DSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALL 162 (382)
T ss_pred hhhHHHHHHHhccCCCEEEE---cCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEE
Confidence 99999999999999999994 4467777777788888866555422226788898877776643 2 2555544
Q ss_pred cC--CCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe--eEEEEechhHH
Q psy13354 173 GA--SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG--GFILMKKKYKK 247 (1342)
Q Consensus 173 ~~--s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G--G~iv~~~~l~~ 247 (1342)
+. ++|.+..|.+.++++|+++|++++..+||..|.+.- +... .+||+++|.||++ +..| |++..+.++.+
T Consensus 163 Th~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpv----s~ke~g~DFiVgSGHKsm-AAs~PiGvl~~~eE~ae 237 (382)
T COG1103 163 THVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPV----SGKEIGADFIVGSGHKSM-AASAPIGVLAMSEEWAE 237 (382)
T ss_pred eccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccc----cccccCCCEEEecCccch-hccCCeeEEeehhHHHH
Confidence 33 677788899999999999999999999999887721 1111 3799999999999 4444 99999999988
Q ss_pred HHhhccCC-c------cccCCcH-HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEee
Q psy13354 248 IINSAVFP-G------IQGGPLM-HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVS 308 (1342)
Q Consensus 248 ~l~~~~~~-~------~~~~~~~-~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~ 308 (1342)
.+-..... + ..|++.. .....+.+++-... +..+ .++.-.+.++++.+.|++.| +....
T Consensus 238 ~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~-eRVk-rWdeEv~kaR~fv~elEkigg~~qlG 305 (382)
T COG1103 238 IVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVV-ERVK-RWDEEVEKARWFVAELEKIGGVKQLG 305 (382)
T ss_pred HHHhhcccccccceeeeecccccCchHHHHHhcCHHHH-HHHH-HHHHHHHHHHHHHHHHHHhhhHHHhC
Confidence 76543311 1 1122110 01111221221111 1111 23334567889999999976 66544
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-11 Score=148.23 Aligned_cols=205 Identities=16% Similarity=0.269 Sum_probs=140.7
Q ss_pred Ccccc-ccc--hhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhcc
Q psy13354 389 NFNTL-IGQ--NHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDN 464 (1342)
Q Consensus 389 ~f~~l-vGq--~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~ 464 (1342)
+|++. +|. ..++..+.....+ +...+.++||||+|+|||++++++++.+....+.
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~--------------------- 178 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPN--------------------- 178 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCC---------------------
Confidence 78884 453 3355555555544 2334568999999999999999999998632111
Q ss_pred CCCccEEEEccCCCcC--HH-----HHHHHHHHHhhcCccCCceEEEeccCccCCH--HHHHHHHHhhcCCC-CcEEEEE
Q psy13354 465 GCFMDYIEMDAASTRG--IN-----EMAQLLEQTIYAPINARYKIYVIDEVHMLTH--HAFNAMLKTLEEPP-KYIKFIL 534 (1342)
Q Consensus 465 ~~~~d~~~i~~~~~~~--~~-----~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p~-~~~vlIl 534 (1342)
..++.+++..... .. ...++.+.. ....+++|||++.+.. ..++.|+.+++..- ....+|+
T Consensus 179 ---~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iii 249 (450)
T PRK00149 179 ---AKVVYVTSEKFTNDFVNALRNNTMEEFKEKY------RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVL 249 (450)
T ss_pred ---CeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEE
Confidence 1233333321100 00 111111111 2345999999998843 23455555443211 1123566
Q ss_pred EeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 535 ATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 535 ~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
+++.+. .+.+.+.||+ .++++.+|+.+++.++|+++++..++.++++++++|++.++||+|.+...|+++..+
T Consensus 250 ts~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 250 TSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAY 329 (450)
T ss_pred ECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHH
Confidence 666543 3557899998 689999999999999999999999999999999999999999999999999998877
Q ss_pred c---CCCCCHHHHHHHhcc
Q psy13354 608 S---SEKITLNSMQEMLSI 623 (1342)
Q Consensus 608 ~---~~~It~e~V~~~v~~ 623 (1342)
+ +..||.+.+++++..
T Consensus 330 ~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 330 ASLTGKPITLELAKEALKD 348 (450)
T ss_pred HHhhCCCCCHHHHHHHHHH
Confidence 5 456999999988864
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=149.54 Aligned_cols=157 Identities=21% Similarity=0.257 Sum_probs=115.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchh-hHHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTH-GMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~-~~~~~~~g~~~~~v~~~ 146 (1342)
++...+|++ .+++++|.+.+++++ ||+.|+..++.+++.+||+|++....+++.+.. ...+...|+ .++.++
T Consensus 56 ~p~~~~le~----~lA~l~g~~~~v~~~-sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~--~v~~v~ 128 (418)
T TIGR01326 56 NPTTDVLEQ----RIAALEGGVAALAVA-SGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGI--EVRFVD 128 (418)
T ss_pred ChhHHHHHH----HHHHHhCCCeEEEEc-cHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCc--EEEEEC
Confidence 444455555 899999988777777 999999999999999999999887766654333 233455676 444445
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++++++.++++ +++|+++.+++| ...|+++|+++|+++|+++|+|++|+.+.. ..++. .+|++
T Consensus 129 ~~-----d~~~l~~~l~~~-t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~-----~~~l~~g~Div 197 (418)
T TIGR01326 129 PD-----DPEEFEKAIDEN-TKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYL-----CRPIDHGADIV 197 (418)
T ss_pred CC-----CHHHHHHhcCcC-CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhc-----CCchhcCCeEE
Confidence 43 899999988764 556666665555 445999999999999999999999876532 22333 37999
Q ss_pred EecCCccCCCCCe---eEEEEec
Q psy13354 224 TSTTHKSLRGPRG---GFILMKK 243 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~~ 243 (1342)
++|++|++ ++.| |++++++
T Consensus 198 v~S~sK~l-~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 198 VHSATKYI-GGHGTAIGGVIVDG 219 (418)
T ss_pred EECccccc-cCCccceEEEEEec
Confidence 99999999 5544 6666543
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=147.80 Aligned_cols=208 Identities=12% Similarity=0.188 Sum_probs=141.0
Q ss_pred CCccccc-cch--hhHHHHHHHHHc-----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 388 SNFNTLI-GQN--HISKSLINALDK-----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 388 ~~f~~lv-Gq~--~~~~~L~~~l~~-----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
.+|++.+ |.. .+...+.+..+. +...+.++||||+|+|||++++++++.+.+.+
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~------------------ 169 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESG------------------ 169 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcC------------------
Confidence 3799965 532 233444444331 23335689999999999999999999986421
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHH--H-hhcCccCCceEEEeccCccCCH--HHHHHHHHhhcCC-CCcEEEE
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQ--T-IYAPINARYKIYVIDEVHMLTH--HAFNAMLKTLEEP-PKYIKFI 533 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~--~-~~~p~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p-~~~~vlI 533 (1342)
..+..++..... ..+.+.+.. . ..........+++|||++.+.. ..++.|+..++.- .....+|
T Consensus 170 --------~~v~yi~~~~f~--~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~II 239 (445)
T PRK12422 170 --------GKILYVRSELFT--EHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIV 239 (445)
T ss_pred --------CCEEEeeHHHHH--HHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEE
Confidence 123333221100 011111100 0 0011234556999999999853 3445555554321 1223567
Q ss_pred EEeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHH-
Q psy13354 534 LATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAI- 605 (1342)
Q Consensus 534 l~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~- 605 (1342)
++++... .+.++|.||+ .++++.+|+.+++..+|++.++..|+.++++++++|++...+|+|.+.+.|++++
T Consensus 240 lts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~ 319 (445)
T PRK12422 240 ISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAK 319 (445)
T ss_pred EecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 7776643 4567999998 7999999999999999999999999999999999999999999999999999984
Q ss_pred --hhc---CCCCCHHHHHHHhcc
Q psy13354 606 --NYS---SEKITLNSMQEMLSI 623 (1342)
Q Consensus 606 --~~~---~~~It~e~V~~~v~~ 623 (1342)
+|+ +..||.+++++++..
T Consensus 320 ~~a~~~~~~~~i~~~~~~~~l~~ 342 (445)
T PRK12422 320 RVAYKKLSHQLLYVDDIKALLHD 342 (445)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHH
Confidence 554 356999999888853
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=135.44 Aligned_cols=119 Identities=26% Similarity=0.399 Sum_probs=104.7
Q ss_pred EEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC------------CCCChHHHhccEEEEEEcCCCHHHHHHHHHH
Q psy13354 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE------------PQKIPITVLSRCIQFNLKKMLHHDIVNNLCY 569 (1342)
Q Consensus 502 vviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~------------~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~ 569 (1342)
|+||||+|+|.-+.+..|.+.+|+.-..+ +|++||+ |+-++..+++|..++.-.|++.++++.++.-
T Consensus 294 VLFIDEvHmLDIE~FsFlnrAlEse~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~i 372 (450)
T COG1224 294 VLFIDEVHMLDIECFSFLNRALESELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRI 372 (450)
T ss_pred eEEEechhhhhHHHHHHHHHHhhcccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHHH
Confidence 99999999999999999999999875554 7788874 5678889999999999999999999999999
Q ss_pred HHHhcCCCcchhHHHHHHHhc-CCcHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 570 ILNKENIKFETSALNLIATGA-QGSMRDALSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 570 ~~~~~g~~i~~~al~~La~~~-~g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
+++.+++.++++|+++|+... ..++|-++++|.-+...+ .+.|..+||+++-
T Consensus 373 Ra~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~ 429 (450)
T COG1224 373 RAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAK 429 (450)
T ss_pred hhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHH
Confidence 999999999999999999974 679999999998655444 4569999998765
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-12 Score=139.84 Aligned_cols=198 Identities=10% Similarity=0.067 Sum_probs=137.6
Q ss_pred HHhhccCCC-Ccccccc---chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 380 VLARKYRPS-NFNTLIG---QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 380 ~l~~k~~p~-~f~~lvG---q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
+|.-.+.|. +|++.+. ...++..+.+.. +...+.++|+||+|+|||++++++++....
T Consensus 9 ~l~~~~~~~~~~~~Fi~~~~N~~a~~~l~~~~--~~~~~~l~l~G~~GsGKThLl~~~~~~~~~---------------- 70 (226)
T PRK09087 9 PLNFSHDPAYGRDDLLVTESNRAAVSLVDHWP--NWPSPVVVLAGPVGSGKTHLASIWREKSDA---------------- 70 (226)
T ss_pred eeCCCCCCCCChhceeecCchHHHHHHHHhcc--cCCCCeEEEECCCCCCHHHHHHHHHHhcCC----------------
Confidence 333334433 7888763 344566555533 223456899999999999999999876531
Q ss_pred CcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC-CcEEEEE
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP-KYIKFIL 534 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~-~~~vlIl 534 (1342)
.+ ++... -..+++..... .+|+|||++.+.. ...+|+.+++.-. ....+|+
T Consensus 71 -------------~~--i~~~~-----~~~~~~~~~~~-------~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ili 122 (226)
T PRK09087 71 -------------LL--IHPNE-----IGSDAANAAAE-------GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLM 122 (226)
T ss_pred -------------EE--ecHHH-----cchHHHHhhhc-------CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEE
Confidence 12 21110 01112222211 3899999998742 2344555543221 1344666
Q ss_pred EeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 535 ATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 535 ~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
+++... ...+.++||+ .++++.+|+.+++..++++.++..++.++++++++|++.+.++++.+...++++..+
T Consensus 123 ts~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~ 202 (226)
T PRK09087 123 TSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRL 202 (226)
T ss_pred ECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 666443 2357899998 899999999999999999999999999999999999999999999999988887665
Q ss_pred c---CCCCCHHHHHHHhcc
Q psy13354 608 S---SEKITLNSMQEMLSI 623 (1342)
Q Consensus 608 ~---~~~It~e~V~~~v~~ 623 (1342)
+ +.+||...+++++..
T Consensus 203 ~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 203 ALERKSRITRALAAEVLNE 221 (226)
T ss_pred HHHhCCCCCHHHHHHHHHh
Confidence 4 567999999998854
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-11 Score=144.93 Aligned_cols=206 Identities=11% Similarity=0.191 Sum_probs=139.4
Q ss_pred CCccccc-cchh--hHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 388 SNFNTLI-GQNH--ISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 388 ~~f~~lv-Gq~~--~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
.+|++++ |... +...+...... +...+.++|||++|+|||++++++++.+......
T Consensus 285 ~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g-------------------- 344 (617)
T PRK14086 285 YTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPG-------------------- 344 (617)
T ss_pred CCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCC--------------------
Confidence 4799975 4322 33344444443 3334568999999999999999999987521100
Q ss_pred cCCCccEEEEccCCCcCHHHHHHHHHHHhh------cCccCCceEEEeccCccCCH--HHHHHHHHhhcCCCC-cEEEEE
Q psy13354 464 NGCFMDYIEMDAASTRGINEMAQLLEQTIY------APINARYKIYVIDEVHMLTH--HAFNAMLKTLEEPPK-YIKFIL 534 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~------~p~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p~~-~~vlIl 534 (1342)
..+..++... -+.++...... ...+.+..+|+|||++++.. ...+.|+.+++.-.. ...+|+
T Consensus 345 ----~~V~Yitaee-----f~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~III 415 (617)
T PRK14086 345 ----TRVRYVSSEE-----FTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVL 415 (617)
T ss_pred ----CeEEEeeHHH-----HHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 1122232211 01111111100 00123456999999998843 234555555543211 223566
Q ss_pred EeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 535 ATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 535 ~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
+++... .+.+.|.||+ .++++.+|+.+....+|+++++..++.++++++++|++...+|+|.+...|+++..+
T Consensus 416 TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~ 495 (617)
T PRK14086 416 SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAF 495 (617)
T ss_pred ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 777643 4567899997 789999999999999999999999999999999999999999999999999998877
Q ss_pred c---CCCCCHHHHHHHhc
Q psy13354 608 S---SEKITLNSMQEMLS 622 (1342)
Q Consensus 608 ~---~~~It~e~V~~~v~ 622 (1342)
+ +..||.+.+++++.
T Consensus 496 a~~~~~~itl~la~~vL~ 513 (617)
T PRK14086 496 ASLNRQPVDLGLTEIVLR 513 (617)
T ss_pred HHhhCCCCCHHHHHHHHH
Confidence 5 45699988887774
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.6e-11 Score=144.05 Aligned_cols=295 Identities=15% Similarity=0.091 Sum_probs=170.8
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc-------
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL------- 110 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~------- 110 (1342)
+-.|.+.+|+.+.+...... +.. + ..+. ..++.++++++.+.+ .+++++||++|+..+++...
T Consensus 55 h~~p~v~~A~~~~~~~~~~~---~~~-~-~~~~----~~~la~~l~~~~~~~-~v~~~~sGseA~e~Alk~ar~~~~~~~ 124 (406)
T PRK12381 55 HAHPALREALNEQASKFWHT---GNG-Y-TNEP----VLRLAKKLIDATFAD-RVFFCNSGAEANEAALKLARKYAHDRY 124 (406)
T ss_pred CCCHHHHHHHHHHHhhcccc---cCc-c-CCHH----HHHHHHHHHhhCCCC-eEEEcCCcHHHHHHHHHHHHHHHhhcC
Confidence 34567999988888532111 111 1 1222 233555888877665 44555599999999998752
Q ss_pred -CCCCEEEEeeccCCccchhhHHhhhCCce----------eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 111 -NPGDTIMGMSLQEGGHLTHGMMLNMSGKW----------FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 111 -~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~----------~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
.+...|+.....+.++.... +...+.. ..+..++. .|++++++.+.+ +.+.+++. |.++
T Consensus 125 ~~~r~~ii~~~~~yHG~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~-~~aaviiE-Pv~~~ 195 (406)
T PRK12381 125 GSHKSGIVAFKNAFHGRTLFT--VSAGGQPKYSQDFAPLPPDIRHAAY-----NDLNSASALIDD-QTCAVIVE-PIQGE 195 (406)
T ss_pred CCCCCeEEEECCCcCCcchhH--HhhcCCcccccCCCCCCCCeeEeCC-----CCHHHHHHhccC-CeeEEEEe-CCcCC
Confidence 13466776555444432211 1111110 01122222 278899988864 45666664 4444
Q ss_pred ------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC-CeeEEEEechhHHH
Q psy13354 179 ------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP-RGGFILMKKKYKKI 248 (1342)
Q Consensus 179 ------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~~ 248 (1342)
...++++|.++|++||+++|+||+|. |....+.... ... .+|+ .+++|++++. .-|++++++++++.
T Consensus 196 gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G~gr~G~~~~~~~~~v~pDi--~t~sK~l~gG~~ig~~~~~~~~~~~ 272 (406)
T PRK12381 196 GGVIPADKAFLQGLRELCDRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDV--LTTAKALGGGFPIGAMLTTEKCASV 272 (406)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEcchhh-CCCCCcchhhhHhhCCCCCE--EEehhhhhCCCceEEEEEcHHHHhh
Confidence 23479999999999999999999983 4322222211 111 2465 4778999421 22999999999888
Q ss_pred HhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEee-CCCCCeEEEEEccCCC-
Q psy13354 249 INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVS-GGTKSHIILVDLRNKK- 324 (1342)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~-~~~~~~~v~i~~~~~~- 324 (1342)
+.......++++ +|...+++.+.++.+. -.+..+++.++.+++.+.|++.+ +.+.. ....+.++++.+....
T Consensus 273 ~~~~~~~~t~~~--~pl~~aaa~a~l~~l~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~ 348 (406)
T PRK12381 273 MTVGTHGTTYGG--NPLASAVAGKVLELIN--TPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYA 348 (406)
T ss_pred cCCCCCCCCCCC--CHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchh
Confidence 865433333332 3444444445444443 22467888889999999888753 22111 1123456677665421
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.....+...+.++||.+.+. + ...+|++++..++
T Consensus 349 ~~~~~~~~~l~~~Gv~v~~~-------g---~~~lRl~p~~~~t 382 (406)
T PRK12381 349 GKAKQISQEAAKAGVMVLIA-------G---PNVVRFAPALNIS 382 (406)
T ss_pred hHHHHHHHHHHHCCcEEeeC-------C---CCEEEEeCCccCC
Confidence 12233444455569999743 1 2368998877555
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=147.75 Aligned_cols=205 Identities=15% Similarity=0.273 Sum_probs=138.4
Q ss_pred CCccc-cccchh--hHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 388 SNFNT-LIGQNH--ISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 388 ~~f~~-lvGq~~--~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
.+|++ ++|... +...+.+.... +...+.++|||++|+|||++++++++++....+.
T Consensus 107 ~tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~-------------------- 166 (405)
T TIGR00362 107 YTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPN-------------------- 166 (405)
T ss_pred CcccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC--------------------
Confidence 36888 456433 34444444443 2334568999999999999999999998632110
Q ss_pred cCCCccEEEEccCCCcC--H-----HHHHHHHHHHhhcCccCCceEEEeccCccCCH--HHHHHHHHhhcCC-CCcEEEE
Q psy13354 464 NGCFMDYIEMDAASTRG--I-----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--HAFNAMLKTLEEP-PKYIKFI 533 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~~--~-----~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p-~~~~vlI 533 (1342)
..++.+++..... . ..+.+..+.. ....+++|||++.+.. ..++.|+.+++.. .....+|
T Consensus 167 ----~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~ii 236 (405)
T TIGR00362 167 ----AKVVYVSSEKFTNDFVNALRNNKMEEFKEKY------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIV 236 (405)
T ss_pred ----CcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 1122332211000 0 0111111111 1245999999998853 2345566555432 1123356
Q ss_pred EEeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy13354 534 LATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 534 l~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~ 606 (1342)
++++... .+.+.+.||+ ..+++.+|+.+++..+++++++..++.++++++++|++.+.+|+|.+...|.++..
T Consensus 237 its~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 237 LTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLA 316 (405)
T ss_pred EecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 6776533 3557889998 57999999999999999999999999999999999999999999999999999877
Q ss_pred hc---CCCCCHHHHHHHhc
Q psy13354 607 YS---SEKITLNSMQEMLS 622 (1342)
Q Consensus 607 ~~---~~~It~e~V~~~v~ 622 (1342)
++ +..||.+.+++++.
T Consensus 317 ~a~~~~~~it~~~~~~~L~ 335 (405)
T TIGR00362 317 YASLTGKPITLELAKEALK 335 (405)
T ss_pred HHHHhCCCCCHHHHHHHHH
Confidence 65 45699888887774
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-10 Score=141.66 Aligned_cols=295 Identities=14% Similarity=0.115 Sum_probs=165.2
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL-------- 110 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~-------- 110 (1342)
..|.+.+++.+.+. .+. +.+. .+ ..+...+++ +.+++++|.+.+.+++ ||++|+..++..+.
T Consensus 54 ~~p~v~~a~~~~~~-~~~--~~~~-~~-~~~~~~~l~----~~l~~~~~~~~~~~~~-SGs~A~e~ai~~a~~~~~~~~~ 123 (401)
T TIGR01885 54 CHPKIVKALTEQAQ-KLT--LSSR-AF-YNDVFGEFA----EYVTKLFGYDKVLPMN-TGAEAVETAIKLARKWGYKVKG 123 (401)
T ss_pred CCHHHHHHHHHHHH-hcc--cccc-cc-CCHHHHHHH----HHHHhhcCCCEEEEeC-ccHHHHHHHHHHHHHHhhhhcC
Confidence 36779999888875 332 2211 11 233334444 4888888876555555 99999999999752
Q ss_pred -CCC-CEEEEeeccCCccchhhHHhhhCCc----------eeEEEEecCCCCCCCCHHHHHHHHHhcC--CeEEEEcCCC
Q psy13354 111 -NPG-DTIMGMSLQEGGHLTHGMMLNMSGK----------WFNSICYGLNKKEKIDYKKVEYLAKKNK--PKLIIAGASA 176 (1342)
Q Consensus 111 -~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~----------~~~~v~~~~~~~~~id~e~Le~~i~~~~--~~liv~~~s~ 176 (1342)
.+| +.|+.....|.+.... .+...+. ......++++ |++++++.+.+.. ...+++.+..
T Consensus 124 ~~~~~~~i~~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~avi~E~v~ 196 (401)
T TIGR01885 124 IPENQAIIVSAKGNFHGRTLG--AISMSTDPDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDHGPNVCAFIVEPIQ 196 (401)
T ss_pred CCCCCCEEEEECCCcCcccHH--HHhCcCCcccccccCCCCCCceEeCCC-----CHHHHHHHHHhcCCCEEEEEEeCcc
Confidence 234 4555444333332111 1111110 0112323333 7899998886432 3345553322
Q ss_pred CC--ccc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC-CCcEEEecCCccCCCCC--eeEEEEechh
Q psy13354 177 YS--QYI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP-FADFITSTTHKSLRGPR--GGFILMKKKY 245 (1342)
Q Consensus 177 ~~--~~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~-~~Divv~S~sK~l~gp~--GG~iv~~~~l 245 (1342)
.+ ... .+++|.++|++||+++|+||+|. |....+..... .. .+|+++ ++|.+++.. -|++++++++
T Consensus 197 ~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~g~~G~~~~~~~~~~~~di~~--~gK~l~~g~~~ig~v~~~~~i 273 (401)
T TIGR01885 197 GEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQT-GLGRTGKLLCVDHENVKPDIVL--LGKALSGGVYPVSAVLADDDV 273 (401)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchhhHHhhcCCCCCEEE--eeccccCCCCCcEEEEEcHHH
Confidence 11 122 39999999999999999999984 42212222111 11 257775 459994421 1789999998
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee-CCCCCeEEEEEccCCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS-GGTKSHIILVDLRNKK 324 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~~~~~~v~i~~~~~~ 324 (1342)
++.+........+++ + |...+++.+.++.+.+. .+.++..++.+++.+.|++.+..++. ....+.+..+.++...
T Consensus 274 ~~~~~~~~~~~t~~~-~-p~~~~aa~a~L~~i~~~--~l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~~~~i~~~~~~ 349 (401)
T TIGR01885 274 MLTIKPGEHGSTYGG-N-PLACAVAVAALEVLEEE--KLAENAEKLGEIFRDQLKKLPKPIITEVRGRGLLNAIVIDESK 349 (401)
T ss_pred HhhccCCCCCCCCCC-C-HHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHhccCCceeEEeecCeeEEEEeccCc
Confidence 888765333333333 2 33344444444554321 34567788899999999987543322 1123444444444332
Q ss_pred ---CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 325 ---ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 325 ---~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
...++...+. ++||.+.+.. ...+|++++..++
T Consensus 350 ~~~~~~~l~~~l~-~~Gv~v~~~~----------~~~lRi~p~l~~t 385 (401)
T TIGR01885 350 TGRTAWDLCLKLK-EKGLLAKPTH----------GNIIRLAPPLVIT 385 (401)
T ss_pred chhHHHHHHHHHH-hCCEEEEecC----------CCEEEEeCCccCC
Confidence 2345666665 5699997531 2469998875444
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=147.31 Aligned_cols=209 Identities=14% Similarity=0.152 Sum_probs=143.6
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCc
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGI 448 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~ 448 (1342)
...+..+.+|+++.|.+..++.+.+++.. -..+.++|||||||||||++|+++++.+..
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--------- 243 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--------- 243 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC---------
Confidence 35567778999999999999999888742 135668999999999999999999998763
Q ss_pred ccCCCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH---------
Q psy13354 449 TSQPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------- 513 (1342)
Q Consensus 449 ~~~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------- 513 (1342)
.++.+..+. ..+...+++++..+.. ..+.||+|||+|.+..
T Consensus 244 --------------------~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg 299 (438)
T PTZ00361 244 --------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGG 299 (438)
T ss_pred --------------------CEEEEecchhhhhhcchHHHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcc
Confidence 133332221 1122345566655443 3456999999987621
Q ss_pred --HHHH---HHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHH
Q psy13354 514 --HAFN---AMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSAL 583 (1342)
Q Consensus 514 --~~~~---~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al 583 (1342)
+... .|+..++. ....+.+|++||.++.+.+++.+ |+ ..++|++|+.++..++++.++.+..+.- +..+
T Consensus 300 ~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-dvdl 378 (438)
T PTZ00361 300 EKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-DVDL 378 (438)
T ss_pred cHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-CcCH
Confidence 1223 34444442 24578899999999999999875 66 7899999999999999998887665432 2235
Q ss_pred HHHHHhc-CCcHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 584 NLIATGA-QGSMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 584 ~~La~~~-~g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
+.++..+ +.+..++.+.+..+...+ ...|+.+|+.+++..
T Consensus 379 ~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 379 EEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 5556554 345555666666554443 235999999887754
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-10 Score=145.73 Aligned_cols=227 Identities=20% Similarity=0.199 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEecCC--CC-
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLN--KK- 150 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~--~~- 150 (1342)
..++.+..++.||++++.+.++|+|.+|.+++++++.+||.|+ +..++|-|.... +-..|. .++++... +.
T Consensus 176 i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VL---vdRN~HKSv~hgaLiLsGa--~PVYl~P~~n~~G 250 (720)
T PRK13578 176 AKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVL---FDRNNHKSNHHGALIQAGA--TPVYLETARNPFG 250 (720)
T ss_pred HHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEE---eecccHHHHHHHHHHHcCC--eEEEeeccccccC
Confidence 3446669999999999999996777799999999999999999 555888887764 777787 55554332 21
Q ss_pred --CCCCH-----HHHHHHHHhc--------CC-eEEEEcCCCCC-cccCHHHHHHH-HHHcCCEEEEEcccchhhhhcCC
Q psy13354 151 --EKIDY-----KKVEYLAKKN--------KP-KLIIAGASAYS-QYIDFERFYHI-AKNINSYFMVDMAHYAGLIAAGE 212 (1342)
Q Consensus 151 --~~id~-----e~Le~~i~~~--------~~-~liv~~~s~~~-~~~~l~~I~~l-a~~~gi~LIvDea~~~g~~~~~~ 212 (1342)
+.+++ +.+++++.++ +| +++++..++|- ...++++|+++ |+.++ +|++||||+.-......
T Consensus 251 i~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~ 329 (720)
T PRK13578 251 FIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPM 329 (720)
T ss_pred CcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcc
Confidence 33454 4488888765 22 55666566655 44599999999 68888 99999999754321111
Q ss_pred ----CCCCCC-CCc----EEEecCCccCCCCCe-eEEEEechhH---------HHHhhccCCccccCCcHHHHHHHHHHH
Q psy13354 213 ----YPNPVP-FAD----FITSTTHKSLRGPRG-GFILMKKKYK---------KIINSAVFPGIQGGPLMHVIAAKAVAF 273 (1342)
Q Consensus 213 ----~~~~l~-~~D----ivv~S~sK~l~gp~G-G~iv~~~~l~---------~~l~~~~~~~~~~~~~~~~~~Aaa~al 273 (1342)
+...++ .+| +++.|.||.+++.+. +++-.+...+ +.++....-+.+++|+.+.++++-.+.
T Consensus 330 ~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPsY~LmASLDva~ 409 (720)
T PRK13578 330 MADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYPLFAALDVNA 409 (720)
T ss_pred cccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 111122 367 999999999987776 6665544321 345443333444566666666665554
Q ss_pred HHhccchHHHHHHHHHHHHHHHHHHH-Hh-CCcEEe
Q psy13354 274 KEVLKPDFKIYQKQVVKNAKILSKIL-DQ-RGIRIV 307 (1342)
Q Consensus 274 ~~~l~~~~~~~~~~l~~~a~~l~~~L-~~-~g~~~~ 307 (1342)
..+.....+...++..+.+..+++.+ .. .++.+.
T Consensus 410 ~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~ 445 (720)
T PRK13578 410 KMHEGESGRRLWMECVKLGIEARKLILARCKLIRPF 445 (720)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeec
Confidence 44432244566777778888888877 33 345543
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.2e-12 Score=152.13 Aligned_cols=218 Identities=19% Similarity=0.244 Sum_probs=142.4
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcC----CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKK----RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~----~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
..|++||+|++.+||+.|+.-++.++.+++.. .....+||+||+|||||++++.+|++++.....+.++.....
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~-- 84 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRE-- 84 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccc--
Confidence 47999999999999999998888888888643 224578999999999999999999999865444332211000
Q ss_pred CCcchhhhccCCCccEEEEcc--CC-CcCHHHHHHH-HHHHhhcCc-------cCCceEEEeccCccCC----HHHHHHH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDA--AS-TRGINEMAQL-LEQTIYAPI-------NARYKIYVIDEVHMLT----HHAFNAM 519 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~--~~-~~~~~~i~~i-i~~~~~~p~-------~~~~rvviIDE~~~L~----~~~~~~L 519 (1342)
......++..... .. ....+.+.+. +....+... ..+++||+|||..... ..-.+.|
T Consensus 85 --------~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L 156 (519)
T PF03215_consen 85 --------SDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREAL 156 (519)
T ss_pred --------cccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHH
Confidence 0000011110000 00 0011223333 222222111 2468899999977542 2235667
Q ss_pred HHhhcCCCC-cEEEEEEeCC-------CC--------CChHHHhcc--EEEEEEcCCCHHHHHHHHHHHHHhc-----CC
Q psy13354 520 LKTLEEPPK-YIKFILATTE-------PQ--------KIPITVLSR--CIQFNLKKMLHHDIVNNLCYILNKE-----NI 576 (1342)
Q Consensus 520 l~~Le~p~~-~~vlIl~t~~-------~~--------kl~~~L~sR--~~~i~~~~l~~~el~~~l~~~~~~~-----g~ 576 (1342)
.+++..... .++||++-.+ .. -+.+.++.. +..+.|.|+...-+.+.|.+++..+ +.
T Consensus 157 ~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~ 236 (519)
T PF03215_consen 157 RQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGK 236 (519)
T ss_pred HHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCC
Confidence 778876655 7777776111 00 234566654 4899999999999999999999987 33
Q ss_pred -Ccc--hhHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy13354 577 -KFE--TSALNLIATGAQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 577 -~i~--~~al~~La~~~~g~lr~a~~~L~kl~~ 606 (1342)
..+ .+.++.|++.+.||+|.|++.|+-.+.
T Consensus 237 ~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 237 NKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred ccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 233 345999999999999999999987665
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-11 Score=145.52 Aligned_cols=205 Identities=16% Similarity=0.189 Sum_probs=144.4
Q ss_pred cCCCCccccccchhhHHHHHHHHHc-----------C-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDK-----------K-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~-----------~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~ 452 (1342)
-...+|+++.|.+.+++.+.+++.. | ..+.++|||||||||||++|+++++.+..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~------------- 205 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA------------- 205 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------------
Confidence 4455899999999999999887741 1 35678999999999999999999998763
Q ss_pred CCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH-----------HH
Q psy13354 453 CGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-----------HA 515 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-----------~~ 515 (1342)
.++.+.++. ..+...+++++..+.. ..+.||+|||+|.+.. +.
T Consensus 206 ----------------~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~----~~P~ILfIDEID~i~~~r~~~~~~~d~~~ 265 (398)
T PTZ00454 206 ----------------TFIRVVGSEFVQKYLGEGPRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGADREV 265 (398)
T ss_pred ----------------CEEEEehHHHHHHhcchhHHHHHHHHHHHHh----cCCeEEEEECHhhhccccccccCCccHHH
Confidence 122222210 1122345666655433 3456999999997621 12
Q ss_pred ---HHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q psy13354 516 ---FNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587 (1342)
Q Consensus 516 ---~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La 587 (1342)
...|+..++. ....+++|++||.++.+++++.+ |+ ..++|+.|+.++...+++.++.+.++. .+-.+..++
T Consensus 266 ~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la 344 (398)
T PTZ00454 266 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFV 344 (398)
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHH
Confidence 2344555553 33578899999999999999886 66 679999999999999999888776654 233466777
Q ss_pred HhcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 588 TGAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 588 ~~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
+.+.| +..++.+++..+...+ ...|+.+|+.+++..
T Consensus 345 ~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~ 385 (398)
T PTZ00454 345 SRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKT 385 (398)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 77644 7777888887766544 234888888877643
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-10 Score=135.72 Aligned_cols=314 Identities=11% Similarity=0.094 Sum_probs=200.5
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~ 104 (1342)
+.+.+.+|+..+|++|++++.+.+.+....|.+--......+...++.+.+.+.++++++.+ +++++++|||.++.+
T Consensus 4 ~~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea 83 (364)
T PRK12462 4 NQLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSM 83 (364)
T ss_pred ccceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHH
Confidence 46789999999999999999988865433233222223345666778888999999999984 466778789999999
Q ss_pred HHHHccCCCCEEE-EeeccCCccchhh--HHhhhCCceeEEEEecC--CCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 105 VFFSVLNPGDTIM-GMSLQEGGHLTHG--MMLNMSGKWFNSICYGL--NKKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 105 al~al~~pGD~Vl-v~~~~~~~~~s~~--~~~~~~g~~~~~v~~~~--~~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+...++.+||+++ +.. .+.++.. ......| .++.+.... +....++++.++ +.+ ..+.+.++.+..+
T Consensus 84 ~~~Nll~~g~~~~~~~~---tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~--~~~-d~~~v~~t~NETst 156 (364)
T PRK12462 84 IPMNFSRPGAAAPEYVT---TGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAELD--WDA-RAPFRHYVSNETVE 156 (364)
T ss_pred HHHHcCCCCCcEEEEEe---CCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHhc--cCC-CCcEEEEccCCCCc
Confidence 9999999999654 322 3444432 2334445 334442111 112334565542 112 2455555443333
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--- 253 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--- 253 (1342)
...+ ++.+.+++++|+|.+..++.. +-..+..|++..+.+|++ ||+| ++++.+++.++......
T Consensus 157 Gv~~~-----~~~~~~~~llvvD~sS~~~s~-----pid~~~~dvi~agsQKnl-gP~Gltvvivs~~al~~~~~~~p~~ 225 (364)
T PRK12462 157 GLQFP-----DAAGLPDSPLIADMSSDFMSR-----PFDVEAYGMVYAHAQKNL-GPAGVTVAIIRRALLERVPDTLPPM 225 (364)
T ss_pred eEecC-----cccccCCCeEEEEcCchhhCC-----CCChHHccEEEeeccccC-CCCceEEEEECHHHHhhccccCCch
Confidence 2222 333346899999999876544 111223599999999999 6999 98889887765543321
Q ss_pred --------CCccccCCcHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHhCC-cEEee--CCCCC-eEEEEE
Q psy13354 254 --------FPGIQGGPLMHVIAAKAVAFKEVLKP--DFKIYQKQVVKNAKILSKILDQRG-IRIVS--GGTKS-HIILVD 319 (1342)
Q Consensus 254 --------~~~~~~~~~~~~~~Aaa~al~~~l~~--~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~--~~~~~-~~v~i~ 319 (1342)
....++||+.....++..++..+.++ +++.+.++..+.++.+++.+.+.. +-... +...+ .-+.+.
T Consensus 226 ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~ 305 (364)
T PRK12462 226 LDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFR 305 (364)
T ss_pred hhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEE
Confidence 12234677788888888888887776 899999999999999999999864 43322 11112 234556
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+..++.++...+. ++|+....+ +.. -+++|.|+=...+
T Consensus 306 ~~~~~l~~~f~~~a~-~~gl~~lkG----hr~----vgg~Ras~yna~~ 345 (364)
T PRK12462 306 FRQPRLDTLFKEQST-EAGFCGLSG----HRS----IGGIRASLYNAVS 345 (364)
T ss_pred cCCHHHHHHHHHHHH-HCCCccccC----Ccc----cCceEEEcCCCCC
Confidence 666555555655555 458876532 211 2569988766444
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-11 Score=141.26 Aligned_cols=248 Identities=15% Similarity=0.198 Sum_probs=157.9
Q ss_pred hccCCCCccccccchhhHHHHHHHHH---cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINALD---KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l~---~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
.-|.|.. +++.+..++.+...+. .|..|+.+++||++|||||.+++.+.+++....... ...+.+|..-.+-
T Consensus 12 ~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~--~~~yINc~~~~t~ 86 (366)
T COG1474 12 EDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANV--EVVYINCLELRTP 86 (366)
T ss_pred CCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccC--ceEEEeeeeCCCH
Confidence 4466654 7887777766655543 455555689999999999999999999998542221 1344455443333
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhh---cCCCCcEEEEEEe
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTL---EEPPKYIKFILAT 536 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~L---e~p~~~~vlIl~t 536 (1342)
..+.......+..+........+....+.+.... ....-||++||++.|.+...+.|..++ +.....+.+|+.+
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~---~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~ 163 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK---KGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVS 163 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh---cCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEe
Confidence 3322211111110000000111122222222221 344558889999988654334454444 4444456677777
Q ss_pred CCCC---CChHHHhccE--EEEEEcCCCHHHHHHHHHHHHHh--cCCCcchhHHHHHHHh---cCCcHHHHHHHHHHHHh
Q psy13354 537 TEPQ---KIPITVLSRC--IQFNLKKMLHHDIVNNLCYILNK--ENIKFETSALNLIATG---AQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 537 ~~~~---kl~~~L~sR~--~~i~~~~l~~~el~~~l~~~~~~--~g~~i~~~al~~La~~---~~g~lr~a~~~L~kl~~ 606 (1342)
|..+ .+.+.++|+. ..+.|+|++.+|+..+|..+++. ..-.++++++++++.. .+||.|.++..|..+..
T Consensus 164 n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~e 243 (366)
T COG1474 164 NDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGE 243 (366)
T ss_pred ccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 7764 5667888887 56889999999999999999985 3456899999888854 57899999999999887
Q ss_pred hcC----CCCCHHHHHHHhccCcHHHHHHHHHHHHc
Q psy13354 607 YSS----EKITLNSMQEMLSIIDQKYLIQILDALAE 638 (1342)
Q Consensus 607 ~~~----~~It~e~V~~~v~~~~~~~if~l~dal~~ 638 (1342)
.+. ..++.++|.++..........+.++.+..
T Consensus 244 iAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~L~~ 279 (366)
T COG1474 244 IAEREGSRKVSEDHVREAQEEIERDVLEEVLKTLPL 279 (366)
T ss_pred HHHhhCCCCcCHHHHHHHHHHhhHHHHHHHHHcCCH
Confidence 764 45999999998655555555455444433
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=152.46 Aligned_cols=203 Identities=18% Similarity=0.257 Sum_probs=145.7
Q ss_pred CCCccccccchhhHHHHHHHH---Hc--------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINAL---DK--------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l---~~--------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
..+|++++|.+.+++.+.+.+ +. ...+..+||+||||||||++|+++|.++..+
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p--------------- 243 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP--------------- 243 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Confidence 458999999999887776665 22 2446789999999999999999999987531
Q ss_pred CcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------HH
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------------HA 515 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------------~~ 515 (1342)
++.++++. ..+...+++++..+.. ..+.||+|||+|.+.. ..
T Consensus 244 --------------~i~is~s~f~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 305 (638)
T CHL00176 244 --------------FFSISGSEFVEMFVGVGAARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQT 305 (638)
T ss_pred --------------eeeccHHHHHHHhhhhhHHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHH
Confidence 22221111 1122456666666543 2345999999998731 13
Q ss_pred HHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhcc--E-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhc
Q psy13354 516 FNAMLKTLEE--PPKYIKFILATTEPQKIPITVLSR--C-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGA 590 (1342)
Q Consensus 516 ~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~sR--~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~ 590 (1342)
.+.|+..++. ....+++|.+||.++.+.+++.+. + ..+.+..|+.++...+++.++++... .++..+..+++.+
T Consensus 306 L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t 384 (638)
T CHL00176 306 LNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRT 384 (638)
T ss_pred HHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcC
Confidence 4555655553 235678899999999999999864 4 78999999999999999999887443 3566788999988
Q ss_pred CC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 591 QG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 591 ~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
.| +.+++.++++.++..+ ...||.+++++++.+
T Consensus 385 ~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 385 PGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDR 422 (638)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 76 7778888877765443 234899998888744
|
|
| >PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2 | Back alignment and domain information |
|---|
Probab=99.35 E-value=6e-12 Score=133.73 Aligned_cols=164 Identities=15% Similarity=0.183 Sum_probs=123.2
Q ss_pred EEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcC
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAP 495 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p 495 (1342)
|||||++-..+...++.+.+.+.... ....++..++... ....++++.+.+.|
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~-----------------------~~~~~~~~~~~~~----~~~~~l~~~~~s~s 53 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKD-----------------------FDDFNVIVFDGSE----DDIDELLEELQSPS 53 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTT-----------------------EEEEEEEE-STTS-----HHH-HTTTSTTTT
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCC-----------------------CccceEEEEcccc----CcHHHHHHHHhcCC
Confidence 89999999999999999999865221 0112344444433 34555889999999
Q ss_pred ccCCceEEEeccC----ccCCHHHHHHHHHhhcCCCCcEEEEEEeC-CCC---CChHHHhccEEEEEEcCCCHHHHHHHH
Q psy13354 496 INARYKIYVIDEV----HMLTHHAFNAMLKTLEEPPKYIKFILATT-EPQ---KIPITVLSRCIQFNLKKMLHHDIVNNL 567 (1342)
Q Consensus 496 ~~~~~rvviIDE~----~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~-~~~---kl~~~L~sR~~~i~~~~l~~~el~~~l 567 (1342)
+|+++|+|+|+++ +....+..+.|.+++++|++++++|+.++ ..+ ++.+.+.+.+.+++|.+++..++..|+
T Consensus 54 lF~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i 133 (172)
T PF06144_consen 54 LFGDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWI 133 (172)
T ss_dssp SSSSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHH
T ss_pred ccCCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHH
Confidence 9999999999999 44566778999999999999999999888 444 456788899999999999999999999
Q ss_pred HHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy13354 568 CYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 568 ~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~ 606 (1342)
++++++.|+.++++++++|++.+++|++.+.++|+|+.+
T Consensus 134 ~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 134 KERAKKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999863
|
7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F. |
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=136.78 Aligned_cols=102 Identities=31% Similarity=0.456 Sum_probs=80.8
Q ss_pred EEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC------------CCCChHHHhccEEEEEEcCCCHHHHHHHHHH
Q psy13354 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE------------PQKIPITVLSRCIQFNLKKMLHHDIVNNLCY 569 (1342)
Q Consensus 502 vviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~------------~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~ 569 (1342)
|++|||+|+|.-+.+..|.+.+|.+-.++ +|++||+ ++-++..+++|+.++...|++.+|+.+++.-
T Consensus 281 VLFIDEvHmLDiEcFsfLnralEs~~sPi-iIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~i 359 (398)
T PF06068_consen 281 VLFIDEVHMLDIECFSFLNRALESELSPI-IILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILKI 359 (398)
T ss_dssp EEEEESGGGSBHHHHHHHHHHHTSTT--E-EEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHHH
T ss_pred eEEecchhhccHHHHHHHHHHhcCCCCcE-EEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHHh
Confidence 99999999999999999999999875554 7888874 4567789999999999999999999999999
Q ss_pred HHHhcCCCcchhHHHHHHHhc-CCcHHHHHHHHHHH
Q psy13354 570 ILNKENIKFETSALNLIATGA-QGSMRDALSLTDQA 604 (1342)
Q Consensus 570 ~~~~~g~~i~~~al~~La~~~-~g~lr~a~~~L~kl 604 (1342)
+++.+++.++++++++|++.. ..++|-++++|.-+
T Consensus 360 R~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 360 RAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp HHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred hhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 999999999999999999864 78999999988654
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=148.32 Aligned_cols=207 Identities=14% Similarity=0.197 Sum_probs=139.3
Q ss_pred CCccccc-cc--hhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhcc
Q psy13354 388 SNFNTLI-GQ--NHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDN 464 (1342)
Q Consensus 388 ~~f~~lv-Gq--~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~ 464 (1342)
.+|++.+ |. ..+.....+...+....+.++||||+|+|||++++++++.+....+.
T Consensus 102 ~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~--------------------- 160 (440)
T PRK14088 102 YTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPD--------------------- 160 (440)
T ss_pred CcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCC---------------------
Confidence 4788865 63 33444455545433224569999999999999999999998632111
Q ss_pred CCCccEEEEccCCCcCHHHHHHHHHHHhhcC-------ccCCceEEEeccCccCCH--HHHHHHHHhhcCCC-CcEEEEE
Q psy13354 465 GCFMDYIEMDAASTRGINEMAQLLEQTIYAP-------INARYKIYVIDEVHMLTH--HAFNAMLKTLEEPP-KYIKFIL 534 (1342)
Q Consensus 465 ~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p-------~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p~-~~~vlIl 534 (1342)
..+..+++.. -+.++........ +.....+++|||++.+.. ..++.|+.+++.-. ....+|+
T Consensus 161 ---~~v~yi~~~~-----f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIi 232 (440)
T PRK14088 161 ---LRVMYITSEK-----FLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVI 232 (440)
T ss_pred ---CeEEEEEHHH-----HHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEE
Confidence 1122232211 1111111111000 012356999999997742 23445555543211 1224566
Q ss_pred EeCCCC----CChHHHhccEE---EEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 535 ATTEPQ----KIPITVLSRCI---QFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 535 ~t~~~~----kl~~~L~sR~~---~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
+++... .+.+.+.||+. ++++.+|+.+++..++++.++..++.++++++++|++.+.||+|.+...|.++..+
T Consensus 233 tsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 233 CSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVY 312 (440)
T ss_pred ECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHH
Confidence 665433 34568899984 89999999999999999999999999999999999999999999999999998776
Q ss_pred c---CCCCCHHHHHHHhcc
Q psy13354 608 S---SEKITLNSMQEMLSI 623 (1342)
Q Consensus 608 ~---~~~It~e~V~~~v~~ 623 (1342)
+ +..||.+.+++++..
T Consensus 313 ~~~~~~~it~~~a~~~L~~ 331 (440)
T PRK14088 313 KETTGEEVDLKEAILLLKD 331 (440)
T ss_pred HHHhCCCCCHHHHHHHHHH
Confidence 5 456999998888853
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.9e-11 Score=131.24 Aligned_cols=270 Identities=21% Similarity=0.290 Sum_probs=144.9
Q ss_pred HHHHHhHH-HHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecC--CHHHHHHHHHHHccCCCCEEEE
Q psy13354 43 VMEAQGTL-LTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPH--SGSQANQAVFFSVLNPGDTIMG 118 (1342)
Q Consensus 43 v~eal~~~-l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~--sGs~A~~~al~al~~pGD~Vlv 118 (1342)
|++|+.+. +... .+.++..|+. ..+.+.|++ .+++.+|++++++.+. |||+|+..++.++++|||+++.
T Consensus 29 VL~Af~~~~vs~~---hf~~tTGYGY~D~GRd~le~----iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~ 101 (403)
T PF06838_consen 29 VLKAFQENRVSDS---HFAGTTGYGYDDIGRDKLER----IYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLS 101 (403)
T ss_dssp HHHHHHHTT--GG---GCS---TT-TT-HHHHHHHH----HHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEE
T ss_pred HHHHHHHcCCChh---hcCCCCcCCCCCccHHHHHH----HHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEE
Confidence 66665553 3222 2333334444 334455555 9999999998888432 9999999999999999999996
Q ss_pred e-eccCCccchhhHH----------hhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEE-cCCCCC-----ccc
Q psy13354 119 M-SLQEGGHLTHGMM----------LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIA-GASAYS-----QYI 181 (1342)
Q Consensus 119 ~-~~~~~~~~s~~~~----------~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~-~~s~~~-----~~~ 181 (1342)
. ..+| -+.... +.-.|+ .+..+++.+++.+|++.+++.+++ +++++.+ -...|+ ...
T Consensus 102 ~tG~PY---DTL~~VIG~~g~~~GSL~e~Gi--~Y~~v~L~~dg~~D~~~i~~~~~~-~tk~v~IQRSrGYs~R~sl~i~ 175 (403)
T PF06838_consen 102 ITGKPY---DTLEEVIGIRGNGPGSLKEFGI--KYREVPLTEDGTIDWEAIKKALKP-NTKMVLIQRSRGYSWRPSLTIE 175 (403)
T ss_dssp SSSS-----CCHHHHHTSSSSSSSSTGGGT---EEEE--B-TTSSB-HHHHHHHHHT-TEEEEEEE-S-TTSSS----HH
T ss_pred cCCCch---hhHHHHhCCCCCCCCChHHhCc--eeEEEeecCCCCcCHHHHHHhhcc-CceEEEEecCCCCCCCCCCCHH
Confidence 2 2111 111112 223344 555557778899999999999996 4555555 334455 223
Q ss_pred CHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCC---CCeeEEEEechhHHHHhhcc-C
Q psy13354 182 DFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRG---PRGGFILMKKKYKKIINSAV-F 254 (1342)
Q Consensus 182 ~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~g---p~GG~iv~~~~l~~~l~~~~-~ 254 (1342)
+++++++++++. +++++||.+|+-..- . ..|.+ .+|++++|+-|..+| |.||||++++++++..-... .
T Consensus 176 ~I~~~i~~vk~~~p~~iifVDNCYGEFvE--~--~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTa 251 (403)
T PF06838_consen 176 EIKEIIKFVKEINPDVIIFVDNCYGEFVE--T--QEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTA 251 (403)
T ss_dssp HHHHHHHHHHHH-TTSEEEEE-TTTTTTS--S--S-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhhCCCeEEEEeCCcceecc--c--cCccccchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcC
Confidence 556666666665 799999999864322 1 11222 389999999999854 68899999999988865422 2
Q ss_pred Ccc---ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC---CeEEEEEccCCCCCHH
Q psy13354 255 PGI---QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK---SHIILVDLRNKKITGK 328 (1342)
Q Consensus 255 ~~~---~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~---~~~v~i~~~~~~~~~~ 328 (1342)
|+. .|.+.. ..-.+...+ .+. ..++..-.+-+......++++|+++.+.+.. .-+-.+.+..+..-..
T Consensus 252 PGiG~e~G~t~~-~~R~~~QGl--FlA---P~vV~eAlKgaif~A~~fe~lG~~v~P~~~~~R~DiIQai~l~~~e~l~~ 325 (403)
T PF06838_consen 252 PGIGKEVGATLG-TNRLMFQGL--FLA---PHVVGEALKGAIFAAALFEKLGFEVSPKPDDPRSDIIQAIELGSPEKLIA 325 (403)
T ss_dssp TTTGGGSS--TT-THHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHHTT-EEES-TTS--SSS-EEEE-SSHHHHHH
T ss_pred CccccccccCcc-hHHHHHhHH--hhc---hHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCCCCceEEEEECCCHHHHHH
Confidence 221 111110 011111111 111 1234555666777778888899998763221 2355666654332224
Q ss_pred HHHHHHH
Q psy13354 329 IAESILE 335 (1342)
Q Consensus 329 ~~~~ll~ 335 (1342)
+++...+
T Consensus 326 FC~~iQ~ 332 (403)
T PF06838_consen 326 FCQGIQA 332 (403)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-11 Score=144.59 Aligned_cols=204 Identities=18% Similarity=0.239 Sum_probs=142.1
Q ss_pred CCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
...+|+++.|.+..++.+.+.+.. ...+..+|||||||||||++|+++++.++.
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~-------------- 191 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------------- 191 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC--------------
Confidence 345789999999999999887732 145678999999999999999999998863
Q ss_pred CCCcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------HHHH
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------HHAF 516 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~~~~ 516 (1342)
.++.++++.. .....++++++.+.. ..+.+|+|||+|.+. .+..
T Consensus 192 ---------------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~ 252 (389)
T PRK03992 192 ---------------TFIRVVGSELVQKFIGEGARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQ 252 (389)
T ss_pred ---------------CEEEeehHHHhHhhccchHHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCccHHHH
Confidence 2333333211 122345555555543 234599999999872 2233
Q ss_pred HHHHHhh---cC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 517 NAMLKTL---EE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 517 ~~Ll~~L---e~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
..|..++ +. ....+++|++||.++.+.+++.+ |+ ..++|++|+.++..++++.+++...+. .+..+..+++
T Consensus 253 ~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~ 331 (389)
T PRK03992 253 RTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAE 331 (389)
T ss_pred HHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHH
Confidence 3444444 32 23478899999999999999885 66 689999999999999999887765543 1234677788
Q ss_pred hcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 589 GAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
.+.| +.+++..++..+...+ ...|+.+|+.+++..
T Consensus 332 ~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~ 371 (389)
T PRK03992 332 LTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEK 371 (389)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 7755 5566666666655543 234888888877744
|
|
| >KOG0734|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=140.86 Aligned_cols=200 Identities=20% Similarity=0.255 Sum_probs=149.1
Q ss_pred cCCCCccccccchhhHHHHHHHHH-----------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALD-----------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~-----------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
....+|+|+-|-++++++|.+.+. .|++|..+||+||||||||.+||++|-+.+-
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V-------------- 363 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV-------------- 363 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC--------------
Confidence 445689999999999998888873 5799999999999999999999999987752
Q ss_pred CCCcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH-----------HHH
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-----------HAF 516 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-----------~~~ 516 (1342)
.|+...++.. .|...+++++.++.... +-||+|||+|.... ...
T Consensus 364 ---------------PFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~A----PcIIFIDEiDavG~kR~~~~~~y~kqTl 424 (752)
T KOG0734|consen 364 ---------------PFFYASGSEFDEMFVGVGARRVRDLFAAAKARA----PCIIFIDEIDAVGGKRNPSDQHYAKQTL 424 (752)
T ss_pred ---------------CeEeccccchhhhhhcccHHHHHHHHHHHHhcC----CeEEEEechhhhcccCCccHHHHHHHHH
Confidence 2333333322 24467899998886543 34999999998842 235
Q ss_pred HHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHhc
Q psy13354 517 NAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFE-TSALNLIATGA 590 (1342)
Q Consensus 517 ~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~-~~al~~La~~~ 590 (1342)
|.||--++. +.+.+++|.+||.++.++++|.+ |+ ..+..+.|+-....++|+.++++-- ++ +-....||+-+
T Consensus 425 NQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~--~~~~VD~~iiARGT 502 (752)
T KOG0734|consen 425 NQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP--LDEDVDPKIIARGT 502 (752)
T ss_pred HHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC--cccCCCHhHhccCC
Confidence 666666663 45678899999999999999985 55 6788899999999999998887632 23 22355677766
Q ss_pred CC-cHHHHHHHHHHHHhhcC----CCCCHHHHHH
Q psy13354 591 QG-SMRDALSLTDQAINYSS----EKITLNSMQE 619 (1342)
Q Consensus 591 ~g-~lr~a~~~L~kl~~~~~----~~It~e~V~~ 619 (1342)
.| +-.++.|++.+++.++. ..+|-.+.+.
T Consensus 503 ~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~ 536 (752)
T KOG0734|consen 503 PGFSGADLANLVNQAALKAAVDGAEMVTMKHLEF 536 (752)
T ss_pred CCCchHHHHHHHHHHHHHHHhcCcccccHHHHhh
Confidence 44 67788899999888763 2366666553
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-11 Score=132.11 Aligned_cols=192 Identities=13% Similarity=0.170 Sum_probs=123.5
Q ss_pred CCcccc-ccc--hhhHHHHHHHHHcC-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 388 SNFNTL-IGQ--NHISKSLINALDKK-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 388 ~~f~~l-vGq--~~~~~~L~~~l~~~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
.+|++. +|. +.+........... ...+.+++|||+|+|||++.+++++++....+.
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~-------------------- 64 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPG-------------------- 64 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTT--------------------
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcccc--------------------
Confidence 479997 463 44445555444432 223468999999999999999999988632111
Q ss_pred cCCCccEEEEccCCCcCHHHHHHHHHHHhhc------CccCCceEEEeccCccCCHHH--HHHHHHhhcCCC-CcEEEEE
Q psy13354 464 NGCFMDYIEMDAASTRGINEMAQLLEQTIYA------PINARYKIYVIDEVHMLTHHA--FNAMLKTLEEPP-KYIKFIL 534 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~------p~~~~~rvviIDE~~~L~~~~--~~~Ll~~Le~p~-~~~vlIl 534 (1342)
..+..+++.. -.+++.+..... .......+++||+++.+.... ++.|..+++.-. ..-.+|+
T Consensus 65 ----~~v~y~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ 135 (219)
T PF00308_consen 65 ----KRVVYLSAEE-----FIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLIL 135 (219)
T ss_dssp ----S-EEEEEHHH-----HHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred ----ccceeecHHH-----HHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEE
Confidence 1234443321 111111111110 012345699999999996543 566666655321 1224577
Q ss_pred EeCCC-C---CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 535 ATTEP-Q---KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 535 ~t~~~-~---kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
+++.. . .+.+.+.||. .++++.+|+.++...++++++...|+.++++++++|++...+|+|.+...|+++..+
T Consensus 136 ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 136 TSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAY 215 (219)
T ss_dssp EESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred EeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 77543 2 4567899996 799999999999999999999999999999999999999999999999999998877
Q ss_pred c
Q psy13354 608 S 608 (1342)
Q Consensus 608 ~ 608 (1342)
+
T Consensus 216 ~ 216 (219)
T PF00308_consen 216 A 216 (219)
T ss_dssp H
T ss_pred h
Confidence 4
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=157.57 Aligned_cols=204 Identities=20% Similarity=0.219 Sum_probs=152.8
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
..|+.+.+|..++.++||++.+..+.+.+..+...+ .+|+||||+|||++++.+++.+.... .|
T Consensus 175 ~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n-~lLvG~pGvGKTal~~~La~~i~~~~---------v~------ 238 (852)
T TIGR03345 175 TDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNN-PILTGEAGVGKTAVVEGLALRIAAGD---------VP------ 238 (852)
T ss_pred hhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCc-eeEECCCCCCHHHHHHHHHHHHhhCC---------CC------
Confidence 568888999999999999999999999988887766 68999999999999999999986311 00
Q ss_pred hhhhccCCCccEEEEccCC------CcC--HHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------HHHHHHHHh
Q psy13354 459 CVKIDNGCFMDYIEMDAAS------TRG--INEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------HAFNAMLKT 522 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~------~~~--~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------~~~~~Ll~~ 522 (1342)
.......++.++.+. ..+ ...++++++++... ..+-|++|||+|.+.. +..+.|+.+
T Consensus 239 ----~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~---~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~ 311 (852)
T TIGR03345 239 ----PALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKAS---PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA 311 (852)
T ss_pred ----ccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhc---CCCeEEEEeChHHhccCCCccccccHHHHhhHH
Confidence 000112334343321 111 24677777776432 3456999999998842 234568888
Q ss_pred hcCCCCcEEEEEEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----cCCCcchhHHHHHHHhcCC-
Q psy13354 523 LEEPPKYIKFILATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----ENIKFETSALNLIATGAQG- 592 (1342)
Q Consensus 523 Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----~g~~i~~~al~~La~~~~g- 592 (1342)
+++ ..+.+|.+|+..+ ...++|.+||+.+.+.+|+.++...+|+..... +++.++++++..+++.+.+
T Consensus 312 l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 312 LAR--GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhC--CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 886 4788899888643 367899999999999999999999996555433 5789999999999998864
Q ss_pred -----cHHHHHHHHHHHHhh
Q psy13354 593 -----SMRDALSLTDQAINY 607 (1342)
Q Consensus 593 -----~lr~a~~~L~kl~~~ 607 (1342)
-+.+++.+||.++..
T Consensus 390 i~~r~LPDKAIdlldea~a~ 409 (852)
T TIGR03345 390 IPGRQLPDKAVSLLDTACAR 409 (852)
T ss_pred cccccCccHHHHHHHHHHHH
Confidence 577789999987654
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-12 Score=149.38 Aligned_cols=259 Identities=20% Similarity=0.246 Sum_probs=168.3
Q ss_pred HHHHHHHHcccCeeE-EecccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHH
Q psy13354 811 QAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLA 889 (1342)
Q Consensus 811 ~~~~~~~~~~~~~~i-~~~~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~ 889 (1342)
+.|++.|++.. +++ .+.+|+||.++++.+.+|++.+|.+|.++.||||.| .++++++.
T Consensus 177 kni~~~l~~~G-~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~G--------------------rsg~dw~~ 235 (486)
T COG2509 177 KNIREYLESLG-GEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPG--------------------RSGRDWFE 235 (486)
T ss_pred HHHHHHHHhcC-cEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccC--------------------cchHHHHH
Confidence 45666776655 777 666899999999999999999999999999999999 88999999
Q ss_pred HHHHHcCCCccccccCCCcccccCccccccceeecCCCCCCCcccc-cCCCCCCCCcccc--------------------
Q psy13354 890 KRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSV-LGNINLHPKQLSC-------------------- 948 (1342)
Q Consensus 890 ~~l~~~g~~~~~~~~~~~~r~~~~si~~~~~~~~~~d~~~~~~f~~-~~~~~~~~~~~~c-------------------- 948 (1342)
...+++|..+..=.-....|+.-....++.......| ..+..+.= .+..+.++|.||.
T Consensus 236 ~l~~K~Gv~~~~~p~dIGVRvE~p~~vmd~~~~~~~~-~k~~~~t~k~~~~VrtFCmcP~G~VV~e~~e~g~~~vNG~S~ 314 (486)
T COG2509 236 MLHKKLGVKMRAKPFDIGVRVEHPQSVMDPHTRLGAA-PKFLYYTKKYGDGVRTFCMCPGGEVVAENYEDGFVVVNGHSY 314 (486)
T ss_pred HHHHhcCcccccCCeeEEEEEecchHhhCcccccccc-ceeEEEeccCCCeEEEEEECCCCeEEeeeccCceEEEcccch
Confidence 9999999987655555557777666656554432222 11111110 0111222333221
Q ss_pred -----------chhhcch---hHHHH-HHhhccc-CCCCccccccccCCCCCCcccccccCCCCCccceeEeecccccce
Q psy13354 949 -----------FITHTNE---KTHNI-IRSEFKN-SPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINE 1012 (1342)
Q Consensus 949 -----------~~~~~~~---~~~~~-i~~~~~~-~p~~~~~~~~~g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~ 1012 (1342)
+++..+. ..|.+ ...++.. .-.++|. ..+++|+.+-...| |...+....++++| ....
T Consensus 315 ~~r~s~NtNfAllV~i~~tep~~~~~ey~r~ia~lA~~lgGg-~~i~Q~~gDf~~gR--rSt~~ri~~~~v~P---Tlk~ 388 (486)
T COG2509 315 YARKSENTNFALLVTIEFTEPFEDGIEYGRSIARLATTLGGG-KAIIQRVGDFLKGR--RSTWSRIGRVFVEP---TLKP 388 (486)
T ss_pred hcccccCcceEEEEeccccCCCCchHHHHHHHHHHHHHhcCC-cchHHHhhHHHcCC--cChHHHhhcccccc---cccc
Confidence 1111100 00000 1111111 1123321 25677777766654 33223334456778 4444
Q ss_pred eecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeC-cc--------CccccccccCcCCeeecccccC-chh
Q psy13354 1013 YYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PC--------NLKSSLETKQIHGLFFAGQING-TTG 1082 (1342)
Q Consensus 1013 ~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~-p~--------~l~~tlesk~~~gL~~aGqi~g-~~g 1082 (1342)
+-|..++..||..+...|+..|+.|++.. |||+.+...+. |. +.+..||+ .|+|||-|||-.| +.|
T Consensus 389 v~pgDls~~lP~~v~~~iiE~le~ldk~i---pG~as~dtlLygvE~k~ys~ri~~d~~~~t-~i~gLy~aGdGAG~arg 464 (486)
T COG2509 389 VTPGDLSLALPDRVVEDLIEALENLDKVI---PGVASDDTLLYGVETKFYSVRIKVDEDLST-SIKGLYPAGDGAGLARG 464 (486)
T ss_pred cccCchhhhCCHHHHHHHHHHHHHhhccC---CCcccccceeeeeeeeeeeeeEeeccccee-eecceEEccccccccch
Confidence 88999999999999999999999998877 76655544433 22 34455666 7999999999999 577
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy13354 1083 YEEAASQGLLAGLNAALFS 1101 (1342)
Q Consensus 1083 y~eA~~~G~~Ag~na~~~~ 1101 (1342)
---||++|+.|+-..+++.
T Consensus 465 I~~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 465 IVSAAADGIKAAEGIARKY 483 (486)
T ss_pred hHHHhhhhHHHHHHHHHHh
Confidence 7789999999998887754
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.4e-11 Score=146.79 Aligned_cols=221 Identities=17% Similarity=0.145 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CC--
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KK-- 150 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~-- 150 (1342)
..++.+..++.||++++.+.++|+|.+|.+++++++.+||.|+ +...+|.|....+...|+ .++++... +.
T Consensus 197 i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VL---vdRN~HKSv~haLilsga--~PVYl~P~rn~~Gi 271 (714)
T PRK15400 197 HKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVL---IDRNCHKSLTHLMMMSDV--TPIYFRPTRNAYGI 271 (714)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEE---eecccHHHHHHHHHHcCC--eEEEecccccccCC
Confidence 3446668999999999999996777799999999999999999 555888888888888887 55554433 21
Q ss_pred -CCCC-----HHHHHHHHHhcC----CeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCC
Q psy13354 151 -EKID-----YKKVEYLAKKNK----PKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPV 217 (1342)
Q Consensus 151 -~~id-----~e~Le~~i~~~~----~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l 217 (1342)
+.++ ++.+++.+.+.. |..+++.+++|- ...+++.|+++|+.++ |++||||+.-......++ +++
T Consensus 272 ~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam 349 (714)
T PRK15400 272 LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGM 349 (714)
T ss_pred ccCCCccccCHHHHHHHHHhCccccCccEEEEECCCCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChh
Confidence 2345 899999887542 224555455555 5559999999999888 689999975432112221 222
Q ss_pred C-CC---c--EEEecCCccCCCCCe-eEEEEechhH-HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHH
Q psy13354 218 P-FA---D--FITSTTHKSLRGPRG-GFILMKKKYK-KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289 (1342)
Q Consensus 218 ~-~~---D--ivv~S~sK~l~gp~G-G~iv~~~~l~-~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~ 289 (1342)
. .+ | +++.|.||.++|.+. +++-.+..+- +.++....-+.+++|..+..+++-.+...+.....+...++..
T Consensus 350 ~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~i 429 (714)
T PRK15400 350 SGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSI 429 (714)
T ss_pred hcCCCCCCceEEEEchhhcccchhHHhHHHHcCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 1 23 4 899999999977666 4443333221 3344432333445566666666655554443224566777888
Q ss_pred HHHHHHHHHHHhC
Q psy13354 290 KNAKILSKILDQR 302 (1342)
Q Consensus 290 ~~a~~l~~~L~~~ 302 (1342)
+.+..+++.+.+.
T Consensus 430 ~~a~~~R~~l~~~ 442 (714)
T PRK15400 430 ERAIKFRKEIKRL 442 (714)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888764
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-11 Score=157.64 Aligned_cols=187 Identities=16% Similarity=0.212 Sum_probs=136.2
Q ss_pred CCCccccccchhhHHHHHHHHH------------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALD------------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~------------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
...|+++.|++.+++.|.+.+. ....+.++|||||||||||++|+++|+++++
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--------------- 513 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--------------- 513 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---------------
Confidence 3479999999999999988874 2245678999999999999999999998863
Q ss_pred CCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC------------HHHH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT------------HHAF 516 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~------------~~~~ 516 (1342)
.++.++++. ......+++++..+.. ..+.||+|||+|.+. ....
T Consensus 514 --------------~fi~v~~~~l~~~~vGese~~i~~~f~~A~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~ 575 (733)
T TIGR01243 514 --------------NFIAVRGPEILSKWVGESEKAIREIFRKARQ----AAPAIIFFDEIDAIAPARGARFDTSVTDRIV 575 (733)
T ss_pred --------------CEEEEehHHHhhcccCcHHHHHHHHHHHHHh----cCCEEEEEEChhhhhccCCCCCCccHHHHHH
Confidence 344444321 1122356666666543 345799999999772 2245
Q ss_pred HHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcC
Q psy13354 517 NAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQ 591 (1342)
Q Consensus 517 ~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~ 591 (1342)
+.|+..++. ....+++|++||.++.+++++++ |+ ..+.+++|+.++..++++.+.++..+. ++..++.|++.+.
T Consensus 576 ~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~ 654 (733)
T TIGR01243 576 NQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTE 654 (733)
T ss_pred HHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcC
Confidence 778888773 45678899999999999999985 88 789999999999999988666544332 2335788888887
Q ss_pred C-cHHHHHHHHHHHHhh
Q psy13354 592 G-SMRDALSLTDQAINY 607 (1342)
Q Consensus 592 g-~lr~a~~~L~kl~~~ 607 (1342)
| +-.++.+.+..+...
T Consensus 655 g~sgadi~~~~~~A~~~ 671 (733)
T TIGR01243 655 GYTGADIEAVCREAAMA 671 (733)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 6 445555666554443
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-10 Score=143.03 Aligned_cols=220 Identities=18% Similarity=0.143 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CC--
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KK-- 150 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~-- 150 (1342)
..++.+.+++.||++++.+.++|+|.+|.+++++++.|||.|+ +...+|-|....+-..|+ .++++... +.
T Consensus 197 i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VL---vdRN~HKSv~~aLilsga--~PVYl~P~~n~~Gi 271 (713)
T PRK15399 197 HLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLL---IDRNCHKSLAHLLMMSDV--VPIWLKPTRNALGI 271 (713)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEE---eecccHHHHHHHHHHcCC--eeEEecccccccCC
Confidence 3445668999999999999996777799999999999999999 555888888888888887 55554432 22
Q ss_pred -CCCCH-----HHHHHHHHhc----CCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEE-EEEcccchhhhhcCCCC--CC
Q psy13354 151 -EKIDY-----KKVEYLAKKN----KPKLIIAGASAYS-QYIDFERFYHIAKNINSYF-MVDMAHYAGLIAAGEYP--NP 216 (1342)
Q Consensus 151 -~~id~-----e~Le~~i~~~----~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~L-IvDea~~~g~~~~~~~~--~~ 216 (1342)
+.+++ +.+++.+.++ +|+.+++++++|- ...++++|+++| |+.+ ++||||+.-......++ ++
T Consensus 272 ~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sa 348 (713)
T PRK15399 272 LGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSG 348 (713)
T ss_pred cCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcCh
Confidence 23455 8899888754 2345555566655 444999999999 6666 69999975332111111 12
Q ss_pred CC---CCcEE---EecCCccCCCCCe-eEEEEechhH-HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHH
Q psy13354 217 VP---FADFI---TSTTHKSLRGPRG-GFILMKKKYK-KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288 (1342)
Q Consensus 217 l~---~~Div---v~S~sK~l~gp~G-G~iv~~~~l~-~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l 288 (1342)
+. .+|.+ +.|.||.++|.+. +++-.+..+- +.++....-+.+++|..+..+++-.+...+.....+...++.
T Consensus 349 m~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~ 428 (713)
T PRK15399 349 MSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRS 428 (713)
T ss_pred hhCCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 21 24655 8999999988777 6666654322 334443333344556666666665555444322456677778
Q ss_pred HHHHHHHHHHHHhC
Q psy13354 289 VKNAKILSKILDQR 302 (1342)
Q Consensus 289 ~~~a~~l~~~L~~~ 302 (1342)
.+.+..+++.+.+.
T Consensus 429 i~~a~~fR~~l~~~ 442 (713)
T PRK15399 429 VERALHFRKEVQRL 442 (713)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888888764
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-11 Score=145.05 Aligned_cols=178 Identities=13% Similarity=0.206 Sum_probs=123.6
Q ss_pred hccCCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCccc
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITS 450 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~ 450 (1342)
.++.+.+|++|.|++..++.++.++.. -..++.+|||||||||||++++++++.+......
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~------- 246 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA------- 246 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccc-------
Confidence 456677999999999999999888742 1356789999999999999999999998632100
Q ss_pred CCCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH-----------
Q psy13354 451 QPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH----------- 513 (1342)
Q Consensus 451 ~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~----------- 513 (1342)
.......++.+..+. ......++.+++.+......+.+-||+|||+|.+..
T Consensus 247 ------------~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e 314 (512)
T TIGR03689 247 ------------ETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVE 314 (512)
T ss_pred ------------ccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHH
Confidence 000001122221111 111234666666665544344567999999997731
Q ss_pred -HHHHHHHHhhcCCC--CcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcch
Q psy13354 514 -HAFNAMLKTLEEPP--KYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFET 580 (1342)
Q Consensus 514 -~~~~~Ll~~Le~p~--~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~ 580 (1342)
...+.|+..++... +.+++|.+||.++.++++|++ |+ ..++|++|+.++..++++.++.. .+.+++
T Consensus 315 ~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~ 386 (512)
T TIGR03689 315 TTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDA 386 (512)
T ss_pred HHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchH
Confidence 12467777776533 578889999999999999997 77 67999999999999999988764 344433
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >KOG0733|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.8e-11 Score=138.89 Aligned_cols=176 Identities=19% Similarity=0.221 Sum_probs=135.6
Q ss_pred CccccccchhhHHHHHHHHHc----------C-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 389 NFNTLIGQNHISKSLINALDK----------K-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~----------~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
.|+++-|.+..+.+|...+.. | ..+.++|||||||||||.+|+++|.++.
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~------------------- 248 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG------------------- 248 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-------------------
Confidence 599999999999888777632 2 4567899999999999999999999997
Q ss_pred chhhhccCCCccEEEEccC------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH-----------HHHHHH
Q psy13354 458 VCVKIDNGCFMDYIEMDAA------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH-----------AFNAML 520 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~-----------~~~~Ll 520 (1342)
..|+.+.+. +..+.+.++++++++.... +-||||||+|.++.. .+..|+
T Consensus 249 ----------vPf~~isApeivSGvSGESEkkiRelF~~A~~~a----PcivFiDeIDAI~pkRe~aqreMErRiVaQLl 314 (802)
T KOG0733|consen 249 ----------VPFLSISAPEIVSGVSGESEKKIRELFDQAKSNA----PCIVFIDEIDAITPKREEAQREMERRIVAQLL 314 (802)
T ss_pred ----------CceEeecchhhhcccCcccHHHHHHHHHHHhccC----CeEEEeecccccccchhhHHHHHHHHHHHHHH
Confidence 246666553 3344567999999886653 349999999998532 356778
Q ss_pred HhhcCC------CCcEEEEEEeCCCCCChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcC
Q psy13354 521 KTLEEP------PKYIKFILATTEPQKIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQ 591 (1342)
Q Consensus 521 ~~Le~p------~~~~vlIl~t~~~~kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~ 591 (1342)
..+++. ...+++|.+||+++.+.++|++-+ ..+.+.-|++....++|..+++...+.- +-....||+.+.
T Consensus 315 t~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTP 393 (802)
T KOG0733|consen 315 TSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTP 393 (802)
T ss_pred HhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCC
Confidence 877764 246888999999999999998644 6788999999999999999998665543 334677888887
Q ss_pred CcHHHHH
Q psy13354 592 GSMRDAL 598 (1342)
Q Consensus 592 g~lr~a~ 598 (1342)
|-...-+
T Consensus 394 GfVGADL 400 (802)
T KOG0733|consen 394 GFVGADL 400 (802)
T ss_pred CccchhH
Confidence 7555444
|
|
| >KOG1970|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=135.85 Aligned_cols=216 Identities=17% Similarity=0.182 Sum_probs=145.6
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHH-----cCCCC-cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALD-----KKRLH-HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~-----~~~~~-~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~ 452 (1342)
-.|+.||+|.+.++|.-|+.-+.+++.+++ ..+++ +.+|++||+||||||+++.++++++.+...+.++..
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~--- 146 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPIN--- 146 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcc---
Confidence 359999999999999999999999999998 55554 578999999999999999999999876555543322
Q ss_pred CCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhh-cC-------ccCCceEEEeccCccCCH-----HHHHHH
Q psy13354 453 CGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIY-AP-------INARYKIYVIDEVHMLTH-----HAFNAM 519 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~-~p-------~~~~~rvviIDE~~~L~~-----~~~~~L 519 (1342)
|-.-........+ ... ...+....+...++.+.. .. ...++++|+|||...... ...+.|
T Consensus 147 ~~~~~~~h~~t~~------~~~-~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL 219 (634)
T KOG1970|consen 147 LKEPENLHNETSF------LMF-PYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVL 219 (634)
T ss_pred ccccccccccchh------ccc-chhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHH
Confidence 1110000000000 000 001112233334443321 11 234567999999764421 134556
Q ss_pred HHhhcCCCCcEEEEEEeCCC------C-CChHHHh--ccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcc------hhHHH
Q psy13354 520 LKTLEEPPKYIKFILATTEP------Q-KIPITVL--SRCIQFNLKKMLHHDIVNNLCYILNKENIKFE------TSALN 584 (1342)
Q Consensus 520 l~~Le~p~~~~vlIl~t~~~------~-kl~~~L~--sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~------~~al~ 584 (1342)
..|...+-..++||++-... + ...+.+. -|...+.|.|+.+.-+.+.|+.++..++...+ ...++
T Consensus 220 ~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 220 RLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred HHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 66666666667666653221 1 3344444 45589999999999999999999999888777 67789
Q ss_pred HHHHhcCCcHHHHHHHHHHH
Q psy13354 585 LIATGAQGSMRDALSLTDQA 604 (1342)
Q Consensus 585 ~La~~~~g~lr~a~~~L~kl 604 (1342)
.+++.++||+|.|++.|+-.
T Consensus 300 ~i~~~s~GDIRsAInsLQls 319 (634)
T KOG1970|consen 300 LICQGSGGDIRSAINSLQLS 319 (634)
T ss_pred HHHHhcCccHHHHHhHhhhh
Confidence 99999999999999998644
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-10 Score=128.62 Aligned_cols=272 Identities=16% Similarity=0.166 Sum_probs=183.9
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc----cCCC----CEEEEeeccCCccchhhHHhhhCCc
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV----LNPG----DTIMGMSLQEGGHLTHGMMLNMSGK 138 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al----~~pG----D~Vlv~~~~~~~~~s~~~~~~~~g~ 138 (1342)
...++.++...+.+|++++.|.+.+.+.+++|+++=...+.++ -..| +.+++++..|+.+.+.+.+ .|.
T Consensus 103 ~vqG~l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam---~G~ 179 (496)
T COG1003 103 QVQGYLELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAM---AGF 179 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhh---cCc
Confidence 3566778888888899999999999999999998665555444 1233 5788888888877666544 333
Q ss_pred eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCCccc--CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC
Q psy13354 139 WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYI--DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP 216 (1342)
Q Consensus 139 ~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~--~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~ 216 (1342)
++|.++++++|.+|+++|++++.++..++.+. +|+..+.. ++.+|+++.|++|..|+.|+|...+.++-. . |
T Consensus 180 --~VV~V~~~~~G~VDlddLk~k~~~~~AalMiT-nPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~-r--P 253 (496)
T COG1003 180 --KVVVVKCDENGNVDLDDLRAKAEDNLAALMIT-NPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLA-R--P 253 (496)
T ss_pred --eEEEEecCCCCCccHHHHHHHhccceeEEEec-cCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhccc-c--c
Confidence 88888999999999999999998655555554 55555333 899999999999999999999765555321 1 2
Q ss_pred CC-CCcEEEecCCccCCCCCe------eEEEEechhHHHHhhc----c-C--------Cc-------cccCCcHHHHHHH
Q psy13354 217 VP-FADFITSTTHKSLRGPRG------GFILMKKKYKKIINSA----V-F--------PG-------IQGGPLMHVIAAK 269 (1342)
Q Consensus 217 l~-~~Divv~S~sK~l~gp~G------G~iv~~~~l~~~l~~~----~-~--------~~-------~~~~~~~~~~~Aa 269 (1342)
-+ .+|++-..+||+|+.|.| |-|..+.+++..+-.. . . .. .+|+ .....-+
T Consensus 254 Gd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs--~~il~~a 331 (496)
T COG1003 254 GDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGS--ASILPIA 331 (496)
T ss_pred cccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCc--chHHHHH
Confidence 22 379999999999976655 5566665555544320 0 0 00 0111 1122222
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC--CCeEEEEEcc----CCC-CCHHHHHHHHHHCCceee
Q psy13354 270 AVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT--KSHIILVDLR----NKK-ITGKIAESILESANIICN 342 (1342)
Q Consensus 270 a~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~--~~~~v~i~~~----~~~-~~~~~~~~ll~~~GI~v~ 342 (1342)
+.-+..+..++++...+.-.-|++|+...|+. .+++...+. -.|-+.++.+ ..+ ...+++.++++ .|+...
T Consensus 332 ~~YI~~mG~~GL~~ase~AvLNANYia~rL~~-~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD-~GfHaP 409 (496)
T COG1003 332 WAYIRMMGADGLKQASEVAVLNANYIARRLKG-YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLD-YGFHAP 409 (496)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh-cCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHh-cCCCCC
Confidence 33334445567888888889999999999987 344433222 2344555554 222 24577777776 599999
Q ss_pred eccCCCCCC
Q psy13354 343 KNSIPNDPE 351 (1342)
Q Consensus 343 ~~~~p~~~~ 351 (1342)
..++|....
T Consensus 410 T~~FPliV~ 418 (496)
T COG1003 410 TMYFPLIVA 418 (496)
T ss_pred cccCccccc
Confidence 888886543
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.2e-11 Score=153.77 Aligned_cols=198 Identities=18% Similarity=0.243 Sum_probs=128.4
Q ss_pred Cccc-cccchhhHHHHHHHHHc----C-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 389 NFNT-LIGQNHISKSLINALDK----K-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 389 ~f~~-lvGq~~~~~~L~~~l~~----~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
.|++ +.||+.+++.+.+.+.. + ..++.++|+||||||||++|+.+++.++.... ...|+.-.....+
T Consensus 317 ~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~-------~i~~~~~~~~~~i 389 (775)
T TIGR00763 317 ILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFV-------RFSLGGVRDEAEI 389 (775)
T ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeE-------EEeCCCcccHHHH
Confidence 3444 88999999998875531 1 22346999999999999999999999973210 0001000000011
Q ss_pred ccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH----HHHHHHHhhcCC------------
Q psy13354 463 DNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH----AFNAMLKTLEEP------------ 526 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~----~~~~Ll~~Le~p------------ 526 (1342)
.. ....+ + ++ ....+.+.+..+. ....||+|||+|.+... ..++|++.|+..
T Consensus 390 ~g-~~~~~--~-g~---~~g~i~~~l~~~~-----~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~ 457 (775)
T TIGR00763 390 RG-HRRTY--V-GA---MPGRIIQGLKKAK-----TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDV 457 (775)
T ss_pred cC-CCCce--e-CC---CCchHHHHHHHhC-----cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCc
Confidence 00 00000 0 00 0112333333321 22349999999999643 357888887631
Q ss_pred ---CCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHH-----Hhc-----CCCcchhHHHHHHHhc--C
Q psy13354 527 ---PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYIL-----NKE-----NIKFETSALNLIATGA--Q 591 (1342)
Q Consensus 527 ---~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~-----~~~-----g~~i~~~al~~La~~~--~ 591 (1342)
..+++||+++|..+.++++|++|+.+++|++++.++...++...+ +.. ++.++++++..|++.. +
T Consensus 458 ~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e 537 (775)
T TIGR00763 458 PFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTRE 537 (775)
T ss_pred eeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChh
Confidence 146888999999999999999999999999999999988887655 222 4579999999998853 3
Q ss_pred CcHHHHHHHHHHHH
Q psy13354 592 GSMRDALSLTDQAI 605 (1342)
Q Consensus 592 g~lr~a~~~L~kl~ 605 (1342)
...|.+...+++++
T Consensus 538 ~g~R~l~r~i~~~~ 551 (775)
T TIGR00763 538 AGVRNLERQIEKIC 551 (775)
T ss_pred cCChHHHHHHHHHH
Confidence 46666666665544
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >KOG0742|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-10 Score=128.90 Aligned_cols=154 Identities=23% Similarity=0.301 Sum_probs=114.1
Q ss_pred CccccccchhhHHHHHHHHH-------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhh
Q psy13354 389 NFNTLIGQNHISKSLINALD-------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVK 461 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~-------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~ 461 (1342)
.|+++|-+......+..... ...+..+++||||||||||.+|+.+|+..+
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SG----------------------- 409 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSG----------------------- 409 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcC-----------------------
Confidence 49999998777766655441 223345799999999999999999999876
Q ss_pred hccCCCccEEEEccCCC-----cCHHHHHHHHHHHhhcCccCCceEEEeccCccC---------C---HHHHHHHHHhhc
Q psy13354 462 IDNGCFMDYIEMDAAST-----RGINEMAQLLEQTIYAPINARYKIYVIDEVHML---------T---HHAFNAMLKTLE 524 (1342)
Q Consensus 462 ~~~~~~~d~~~i~~~~~-----~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L---------~---~~~~~~Ll~~Le 524 (1342)
.|+..+.+.+. .++..+.++++-+ .-..+.-+++|||+|.+ + ..+.|+||----
T Consensus 410 ------lDYA~mTGGDVAPlG~qaVTkiH~lFDWa---kkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG 480 (630)
T KOG0742|consen 410 ------LDYAIMTGGDVAPLGAQAVTKIHKLFDWA---KKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 480 (630)
T ss_pred ------CceehhcCCCccccchHHHHHHHHHHHHH---hhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc
Confidence 34554444321 2234455555544 33345569999999955 1 224566665556
Q ss_pred CCCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhc
Q psy13354 525 EPPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKE 574 (1342)
Q Consensus 525 ~p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~ 574 (1342)
+.+.++++++++|++..++-++.+|. .+++|+-|.+++..+.|..++.++
T Consensus 481 dqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 481 DQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred ccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 67789999999999999999999999 899999999999999998888763
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.7e-10 Score=127.79 Aligned_cols=297 Identities=14% Similarity=0.050 Sum_probs=172.6
Q ss_pred CceeeeecCCC-----CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASENY-----TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~-----l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
.+|.++.+..+ -+|.|.+|+.+.+......+.| . ++|-.+++.+.+.++.-+-+=|++|||+|.
T Consensus 54 ~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~~fg~P--------t---e~Ei~~Aell~~~~p~~e~vrfvnSGTEAt 122 (432)
T COG0001 54 EYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSFGAP--------T---ELEVELAELLIERVPSIEKVRFVNSGTEAT 122 (432)
T ss_pred EeeehhccCcccccCCCCHHHHHHHHHHHHhcCCCCCC--------C---HHHHHHHHHHHHhcCcccEEEEecchhHHH
Confidence 44655554432 2455999988888643332222 1 566667788999988744444555999999
Q ss_pred HHHHHHc--cCCCCEEEEeeccCCccchhhHH-----------hhhCC----ceeEEEEecCCCCCCCCHHHHHHHHHhc
Q psy13354 103 QAVFFSV--LNPGDTIMGMSLQEGGHLTHGMM-----------LNMSG----KWFNSICYGLNKKEKIDYKKVEYLAKKN 165 (1342)
Q Consensus 103 ~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~-----------~~~~g----~~~~~v~~~~~~~~~id~e~Le~~i~~~ 165 (1342)
+.+++.. ....|+|+...-.|.+|...... ....| .--.++.++++ |++.+++++.+.
T Consensus 123 msAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~ 197 (432)
T COG0001 123 MSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEAFEEY 197 (432)
T ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHHHHHc
Confidence 9999866 23456777655444443322211 01111 11133344556 899999999876
Q ss_pred --CCeEEEEcC--CCCC----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcEEEecCCccCCCCCe
Q psy13354 166 --KPKLIIAGA--SAYS----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADFITSTTHKSLRGPRG 236 (1342)
Q Consensus 166 --~~~liv~~~--s~~~----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Divv~S~sK~l~gp~G 236 (1342)
..+.|++.| +|.+ ...-++.|.++|++||++||.||+....-...+-....+.. +|+. ++.|.++|.--
T Consensus 198 g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlt--tlGKiIGGGlP 275 (432)
T COG0001 198 GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLT--TLGKIIGGGLP 275 (432)
T ss_pred CCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchh--hhhhhhcCCcc
Confidence 445566644 3322 33369999999999999999999976333321222222221 4766 45699955322
Q ss_pred -eEEEEechhHHHHhhccCCccccC-CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcEEeeCC
Q psy13354 237 -GFILMKKKYKKIINSAVFPGIQGG-PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIRIVSGG 310 (1342)
Q Consensus 237 -G~iv~~~~l~~~l~~~~~~~~~~~-~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~~~~~~ 310 (1342)
|++.++.++++.+......+.-++ +.+|...++..+.++.+.. .+...+++.+..++|.+.|++ .|+++....
T Consensus 276 ~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~-~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~ 354 (432)
T COG0001 276 IGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMT-EEGVYERLDALGERLAEGLRAAAERHGIPLTVNR 354 (432)
T ss_pred eeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEee
Confidence 889999999998876543333222 2245555555555554431 111456666667777766654 576665433
Q ss_pred CCCeEEEEEccCCC------------CCHHHHHHHHHHCCceeeec
Q psy13354 311 TKSHIILVDLRNKK------------ITGKIAESILESANIICNKN 344 (1342)
Q Consensus 311 ~~~~~v~i~~~~~~------------~~~~~~~~ll~~~GI~v~~~ 344 (1342)
.++.+.++...... .-..++..+|++ ||++.|.
T Consensus 355 ~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l~ps 399 (432)
T COG0001 355 VGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPS 399 (432)
T ss_pred ecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-CcccCCc
Confidence 44433333322111 112456666665 9998854
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=138.73 Aligned_cols=205 Identities=18% Similarity=0.252 Sum_probs=138.1
Q ss_pred cCCCCccccccchhhHHHHHHHHHcC------------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDKK------------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~~------------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~ 452 (1342)
.....|+++.|.+..++.+.+.+... ..+.++|||||||||||++|+++++.+...
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~------------ 183 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT------------ 183 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC------------
Confidence 44557999999999999998887421 346779999999999999999999988631
Q ss_pred CCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------HHH
Q psy13354 453 CGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------HHA 515 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~~~ 515 (1342)
++.+..+. ..+...+++++..+.. ..+.||+|||+|.+. .+.
T Consensus 184 -----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~~~~~~~ 242 (364)
T TIGR01242 184 -----------------FIRVVGSELVRKYIGEGARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGTSGDREV 242 (364)
T ss_pred -----------------EEecchHHHHHHhhhHHHHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCCCccHHH
Confidence 22222110 0111234444444332 234599999999873 122
Q ss_pred HHHHHHh---hcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q psy13354 516 FNAMLKT---LEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587 (1342)
Q Consensus 516 ~~~Ll~~---Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La 587 (1342)
...+.++ ++. ...++.+|++||.++.+++++.+ |+ ..+.++.|+.++..+++..++...... ++..+..++
T Consensus 243 ~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la 321 (364)
T TIGR01242 243 QRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIA 321 (364)
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHH
Confidence 2334333 442 23578899999999999999885 55 689999999999999998877654432 123467788
Q ss_pred HhcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 588 TGAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 588 ~~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
+.+.| +.+++.+.+..+...+ ...|+.+|+.+++..
T Consensus 322 ~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 322 KMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 87755 4455666665544432 345999999887754
|
Many proteins may score above the trusted cutoff because an internal |
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-09 Score=131.52 Aligned_cols=290 Identities=16% Similarity=0.122 Sum_probs=157.4
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc--cCCCCEEE
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV--LNPGDTIM 117 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al--~~pGD~Vl 117 (1342)
.|.+.+++.+.+.. +. .++ +. ...+++.++++.+.. ..+..+++++||++|+..+++.. ...+++|+
T Consensus 46 ~p~v~~a~~~~~~~-~~-~~~-~~------~~~~~~~~la~~l~~--~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv 114 (375)
T PRK04260 46 HPQVQQALQKQAGL-IW-HSP-NL------YLNSLQEEVAQKLIG--DKDYLAFFCNSGAEANEAAIKIARKATGKQEII 114 (375)
T ss_pred CHHHHHHHHHHHHh-cC-ccc-Cc------cCCHHHHHHHHHHhc--CcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEE
Confidence 66799998888753 21 111 11 122455534433332 11234567779999999998876 23467777
Q ss_pred EeeccCCccchhhHHhh-------hCCceeEEEE-ecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC------cccCH
Q psy13354 118 GMSLQEGGHLTHGMMLN-------MSGKWFNSIC-YGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS------QYIDF 183 (1342)
Q Consensus 118 v~~~~~~~~~s~~~~~~-------~~g~~~~~v~-~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~------~~~~l 183 (1342)
+.+..+.+......... ..+..+..+. .+. .|++.+++.+.+ +.+++++.+.+.+ ...++
T Consensus 115 ~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~dl~~l~~~l~~-~~a~vi~e~v~~~~G~~~~~~~~l 188 (375)
T PRK04260 115 TFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIF-----NDLNSVKALVNK-NTAAVMLELVQGESGVLPADKDFV 188 (375)
T ss_pred EECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCC-----CCHHHHHHhcCC-CeEEEEECCeECCCCCcCCCHHHH
Confidence 76544433221111100 0000000011 111 378899887754 4556666543322 11248
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-CCeeEEEEechhHHHHhhccCCcccc
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG-PRGGFILMKKKYKKIINSAVFPGIQG 259 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g-p~GG~iv~~~~l~~~l~~~~~~~~~~ 259 (1342)
++|.++|+++|+++|+||+|. |....+.... ... ..|++ ||||++++ .+.|++++++++.+.+........++
T Consensus 189 ~~~~~l~~~~~~~~i~De~~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~ 265 (375)
T PRK04260 189 KALADYCQETGILLIVDEVQT-GMGRTGKLYAFEHYGIEPDIF--TLAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTFG 265 (375)
T ss_pred HHHHHHHHHcCCEEEEechhh-CCCcccchhhhHhhCCCCCEE--EecccccCCcceEEEEEcHHHHhhcCCCCCCCCCC
Confidence 999999999999999999985 4322222111 111 25754 78899942 23499999998888776433333333
Q ss_pred CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH----hCC-cEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 260 GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD----QRG-IRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 260 ~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~----~~g-~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
+ ++..++++.+..+.... +...++..+..+++++.+. +.+ +.... ..+.++|+.+.. ...++...++
T Consensus 266 ~--~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~~~~~~--~~~~~~~~l~ 337 (375)
T PRK04260 266 G--NKLSMAAASATLDIMLT--AGFLEQALENGNYLQEQLQKALQDKETVTTVR--GLGYMIGIETTA--DLSQLVEAAR 337 (375)
T ss_pred c--CHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe--ccceEEEEEecC--cHHHHHHHHH
Confidence 2 33344444455544321 1233444444455554444 333 12111 257788888743 2345555555
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+ +||.+.+. + ...+|++++...+
T Consensus 338 ~-~Gi~v~~~-------~---~~~lR~~~~~~~t 360 (375)
T PRK04260 338 D-KGLIVLTA-------G---TNVIRLLPPLTLT 360 (375)
T ss_pred h-CCCEEecC-------C---CCEEEEcCCCccC
Confidence 4 69998642 1 2469999877655
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-10 Score=132.82 Aligned_cols=205 Identities=12% Similarity=0.199 Sum_probs=143.1
Q ss_pred Cccccc-c--chhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhcc
Q psy13354 389 NFNTLI-G--QNHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDN 464 (1342)
Q Consensus 389 ~f~~lv-G--q~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~ 464 (1342)
+|++.+ | ..-+........+. |...+.++|||+.|.|||++++++.+......+.
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~--------------------- 143 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPN--------------------- 143 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCC---------------------
Confidence 577743 3 33444444444443 3345669999999999999999999998743221
Q ss_pred CCCccEEEEccCCCcCHHHHHHHHHHHhh------cCccCCceEEEeccCccCCH--HHHHHHHHhhcCCCCc-EEEEEE
Q psy13354 465 GCFMDYIEMDAASTRGINEMAQLLEQTIY------APINARYKIYVIDEVHMLTH--HAFNAMLKTLEEPPKY-IKFILA 535 (1342)
Q Consensus 465 ~~~~d~~~i~~~~~~~~~~i~~ii~~~~~------~p~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p~~~-~vlIl~ 535 (1342)
.-++.+.... -+.+.+..... .... ...+++||+++++.. ..++.|..++..-... -.+|++
T Consensus 144 ---a~v~y~~se~-----f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvlt 214 (408)
T COG0593 144 ---ARVVYLTSED-----FTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLT 214 (408)
T ss_pred ---ceEEeccHHH-----HHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEE
Confidence 1233332221 11122211111 0112 446999999999854 2356666665542211 156777
Q ss_pred eCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q psy13354 536 TTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS 608 (1342)
Q Consensus 536 t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~ 608 (1342)
+++++ .+.+.|+||+ .+++..+|+.+....+|++.++..++.++++++.++++....|+|.+...|+++..++
T Consensus 215 sdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a 294 (408)
T COG0593 215 SDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFA 294 (408)
T ss_pred cCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 77655 3457899986 7999999999999999999999999999999999999999999999999999988886
Q ss_pred ---CCCCCHHHHHHHhcc
Q psy13354 609 ---SEKITLNSMQEMLSI 623 (1342)
Q Consensus 609 ---~~~It~e~V~~~v~~ 623 (1342)
+..||.+.|.+++..
T Consensus 295 ~~~~~~iTi~~v~e~L~~ 312 (408)
T COG0593 295 LFTKRAITIDLVKEILKD 312 (408)
T ss_pred HhcCccCcHHHHHHHHHH
Confidence 346999999988843
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-09 Score=133.36 Aligned_cols=308 Identities=14% Similarity=0.074 Sum_probs=165.2
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh-CCCCceEecCCHHHHHHHHHHHcc--CCCC
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF-NAEAANVQPHSGSQANQAVFFSVL--NPGD 114 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~-g~~~~vi~~~sGs~A~~~al~al~--~pGD 114 (1342)
+-.|.+.+|+.+.+. .+..+..+ .+ .. +...++.+++++++ +..+.++|++||++|+..+++... ....
T Consensus 59 h~~p~v~~a~~~q~~-~~~~~~~~--~~-~~----~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~ 130 (433)
T PRK08117 59 HRHPKVVQAIKEQAD-KLMHGPSG--VI-YY----ESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRP 130 (433)
T ss_pred CCCHHHHHHHHHHHH-hccCcccc--cc-CC----HHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCC
Confidence 356779999888885 33222111 11 12 33344555888887 333567777799999999998642 2234
Q ss_pred EEEEeeccCCccchhhHHhhh-----C------CceeEEEEecCCCC--CC--------CCHHHHHHHHHh----cCCeE
Q psy13354 115 TIMGMSLQEGGHLTHGMMLNM-----S------GKWFNSICYGLNKK--EK--------IDYKKVEYLAKK----NKPKL 169 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~~~~~-----~------g~~~~~v~~~~~~~--~~--------id~e~Le~~i~~----~~~~l 169 (1342)
.|+...-.+.++......+.. . -.++..++++.... .. -+++++++.+.. ...+.
T Consensus 131 ~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aa 210 (433)
T PRK08117 131 YIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAA 210 (433)
T ss_pred eEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEE
Confidence 566554333332211111110 0 01112232221100 00 145667776653 23455
Q ss_pred EEEcCCCCC-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCC-CCeeE
Q psy13354 170 IIAGASAYS-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRG-PRGGF 238 (1342)
Q Consensus 170 iv~~~s~~~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~g-p~GG~ 238 (1342)
|++.+ ..+ ....+++|.++|++||+++|+||+|. |+...+... ...+ .+|+ .+++|++++ .+.|+
T Consensus 211 vi~Ep-i~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G~gr~G~~~~~~~~gv~pDi--~t~sK~lg~G~piga 286 (433)
T PRK08117 211 VIIEP-VLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT-GFGRTGEWFAAQTFGVVPDI--MTIAKGIASGLPLSA 286 (433)
T ss_pred EEECC-eeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-ccCccccchhHhhcCCCCCE--eehhhhccCCCccee
Confidence 66533 322 22249999999999999999999997 432222211 1111 1465 477899943 22388
Q ss_pred EEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEee-CCCCCeE
Q psy13354 239 ILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVS-GGTKSHI 315 (1342)
Q Consensus 239 iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~-~~~~~~~ 315 (1342)
+++++++++.+......+++++ +|..++++.+..+.+.. +...+++.++.+++.+.|.+.. +.+.. -...+.+
T Consensus 287 v~~~~~i~~~~~~~~~~~T~~~--np~~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~ 362 (433)
T PRK08117 287 VVASKELMEQWPLGSHGTTFGG--NPVACAAALATLEVIKE--EKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLM 362 (433)
T ss_pred EEEcHHHHhhccCCCCCCCCCc--CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcE
Confidence 9999988887754333333333 45555555566655431 2356677777888888887642 22111 1122334
Q ss_pred EEEEccCCC------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 316 ILVDLRNKK------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 316 v~i~~~~~~------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+++.+.... ....+...++ ++||++.+... . ...+|++.+..++.+
T Consensus 363 ~gi~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~g~----~----~~~lRl~p~~~~t~~ 414 (433)
T PRK08117 363 IGIEIVDPDGEPDGDAVEKILDKCL-EKGLLFYLCGN----A----GNVLRMIPPLTVTKE 414 (433)
T ss_pred EEEEEecCCCCcchHHHHHHHHHHH-HCCCEEeecCC----C----CCEEEEeCCccCCHH
Confidence 455553221 1223444444 56998865311 1 246999887766643
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-09 Score=130.66 Aligned_cols=297 Identities=14% Similarity=0.099 Sum_probs=168.6
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc---C--
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL---N-- 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~---~-- 111 (1342)
.+-.|.+.+++.+.+.. .. +... .+ .. +...++.+++.+..+.+ .+.+++||++|++.+++... +
T Consensus 30 Gh~~p~v~~ai~~q~~~-~~--~~~~-~~-~~----~~~~~la~~l~~~~~~~-~v~f~~sGseA~e~AlklAr~~~~~~ 99 (382)
T PLN00144 30 GHGDPDWVKAVAEQAGT-LA--HVSN-VY-HT----IPQVELAKRLVASSFAD-RVFFCNSGTEANEAAIKFARKYQRVR 99 (382)
T ss_pred CCCCHHHHHHHHHHHHh-cC--Cccc-cc-cC----HHHHHHHHHHHhcCCCC-eEEEeCCcHHHHHHHHHHHHHHHhcc
Confidence 45677899998888853 21 1111 11 12 22334555677766544 55666699999999998652 1
Q ss_pred ----C------CCEEEEeeccCCccchhhHHhhhCC---c-----eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEc
Q psy13354 112 ----P------GDTIMGMSLQEGGHLTHGMMLNMSG---K-----WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAG 173 (1342)
Q Consensus 112 ----p------GD~Vlv~~~~~~~~~s~~~~~~~~g---~-----~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~ 173 (1342)
+ ..+|+.....+.++-.....+.... . ......++.+ |++.+++.+...+++.+++.
T Consensus 100 ~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~~~~aavi~e 174 (382)
T PLN00144 100 APDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYG-----NLEAARKLIQKGKTAAVFVE 174 (382)
T ss_pred CCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCC-----CHHHHHHhcCCCCeEEEEEc
Confidence 0 2467765544433321111111000 0 0011222322 78999988865567777776
Q ss_pred CCCCC----ccc--CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-CCeeEEEEec
Q psy13354 174 ASAYS----QYI--DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG-PRGGFILMKK 243 (1342)
Q Consensus 174 ~s~~~----~~~--~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g-p~GG~iv~~~ 243 (1342)
|..++ ... .+++|.++|++||+++|+||+|.. +...+.... ... .+| +.+++|.+++ .+.|++++++
T Consensus 175 P~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg-~gr~g~~~~~~~~~~~PD--i~t~sK~l~~G~pig~v~~~~ 251 (382)
T PLN00144 175 PVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCG-LGRTGYLWAHEAYGVEPD--IMTLAKPLAGGLPIGAVLVTE 251 (382)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC-CCccchHhhhhhcCCCCC--EEEecccccCCcceEEEEEcH
Confidence 54333 222 399999999999999999999862 211221111 111 257 4566799943 2339999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcEEeeCCCCCeEEEEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIRIVSGGTKSHIILVD 319 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~~~~~~~~~~~v~i~ 319 (1342)
++++.+.......++++ +|..++++.+.++.+.+ .++.+++.+..+++.+.|.+ .+...... ..+.++|+.
T Consensus 252 ~~~~~~~~~~~~~T~~~--~pl~~aaa~a~l~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~vr-g~G~~~~l~ 326 (382)
T PLN00144 252 KVASAINPGDHGSTFAG--GPLVCNAALAVLDKISK--PGFLASVAKKGEYLRELLRRKLGGNPHVKEVR-GVGLLVGIQ 326 (382)
T ss_pred HHHhccCCCCCCCCCCC--CHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHhhCCCceeee-cCceEEEEE
Confidence 99888765434333433 45556666655555532 23455666666666665554 22111111 256788888
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.. ....+...+++ +||.+.+... ...+|++++...+
T Consensus 327 l~~--~~~~~~~~~~~-~Gv~i~~~~~---------~~~lrl~p~~~~~ 363 (382)
T PLN00144 327 LDV--PAGPLVDACRD-SGLLVLTAGK---------GDVVRLVPPLVIS 363 (382)
T ss_pred ecC--ccHHHHHHHHH-CCeEEeecCC---------CCEEEEeCCCccC
Confidence 732 23456665554 6999976410 1469998877544
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.3e-10 Score=134.84 Aligned_cols=261 Identities=15% Similarity=0.048 Sum_probs=143.3
Q ss_pred CceeeeecC-----CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASE-----NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~-----n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..|.+.++. .+.+|.+.+++.+.+.+.. .+....+...+ +++++++.+...+.+++++||++|+
T Consensus 49 ~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-------~~~~~~~~~~~----lae~l~~~~~~~~~v~~~~sGseA~ 117 (423)
T TIGR00713 49 EYIDYVLSWGPLILGHAHPRVVEAVKEALERGT-------SYGAPTEAEIL----LAKEIISRVPSVEMVRFVNSGTEAT 117 (423)
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhCC-------cCCCCCHHHHH----HHHHHHHhCCcccEEEEeCCHHHHH
Confidence 446655442 3667889999998885311 11222333334 4447777765444566677999999
Q ss_pred HHHHHHc--cCCCCEEEEeeccCCccchhhHHhhhCCc---------------eeEEEEecCCCCCCCCHHHHHHHHHh-
Q psy13354 103 QAVFFSV--LNPGDTIMGMSLQEGGHLTHGMMLNMSGK---------------WFNSICYGLNKKEKIDYKKVEYLAKK- 164 (1342)
Q Consensus 103 ~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~---------------~~~~v~~~~~~~~~id~e~Le~~i~~- 164 (1342)
..+++.. ....++|++....+.++..........+. ....+.++.+ |++++++.+..
T Consensus 118 e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~~ 192 (423)
T TIGR00713 118 MSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYN-----DLEALEEVFEEY 192 (423)
T ss_pred HHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCC-----CHHHHHHHHHHc
Confidence 9999864 23457888766555443211111000000 0011222222 78999998874
Q ss_pred -cCCeEEEEc-CCCCC----c-ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCC-CC
Q psy13354 165 -NKPKLIIAG-ASAYS----Q-YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRG-PR 235 (1342)
Q Consensus 165 -~~~~liv~~-~s~~~----~-~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~g-p~ 235 (1342)
.+.+.|++. .++++ . ...+++|.++|++||+++|+||+|.....+......... ..|++ +++|.+++ .+
T Consensus 193 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l~~G~p 270 (423)
T TIGR00713 193 GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKIIGGGLP 270 (423)
T ss_pred CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhhhcCCCc
Confidence 234555553 22223 1 234899999999999999999998532211110000111 24654 68899942 23
Q ss_pred eeEEEEechhHHHHhhccCCcc-ccCCcHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHhCCcEE
Q psy13354 236 GGFILMKKKYKKIINSAVFPGI-QGGPLMHVIAAKAVAFKEVLKP--DFKIYQKQVVKNAKILSKILDQRGIRI 306 (1342)
Q Consensus 236 GG~iv~~~~l~~~l~~~~~~~~-~~~~~~~~~~Aaa~al~~~l~~--~~~~~~~~l~~~a~~l~~~L~~~g~~~ 306 (1342)
.|++++++++++.+......+. .+...++..++++.+.++.+.+ ..+...+.....++.+.+.+.+.++..
T Consensus 271 ig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 344 (423)
T TIGR00713 271 VGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPH 344 (423)
T ss_pred eeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 4999999999988864211111 1112244444445455554432 234444444444555555555666554
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-09 Score=133.09 Aligned_cols=296 Identities=14% Similarity=0.126 Sum_probs=159.8
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC-------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN------- 111 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~------- 111 (1342)
-.|.+.+++.+.+. .+.. ..+.+ ..+...+ +.+.++++++.+.+.+ ++||++|+..+++....
T Consensus 92 ~~p~v~~ai~~ql~-~~~~--~~~~~--~~~~~~~----la~~L~~~~~~~~~~f-~~SGseA~e~AlklAr~~~~~~~g 161 (474)
T PLN02624 92 CHPKIIKALTEQAE-KLTL--SSRAF--YNDKFPE----FAEYLTSMFGYDMVLP-MNTGAEGVETAIKLARKWGYEKKG 161 (474)
T ss_pred CCHHHHHHHHHHHH-hcCC--ccccc--CCHHHHH----HHHHHHhhcCCCeEEE-eCChHHHHHHHHHHHHHHHHhhcC
Confidence 37779999999885 3322 21211 2233334 4447888887665555 45999999999975431
Q ss_pred -C-CC-EEEEeeccCCccchhhHHhhhCCce----------eEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCC
Q psy13354 112 -P-GD-TIMGMSLQEGGHLTHGMMLNMSGKW----------FNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASA 176 (1342)
Q Consensus 112 -p-GD-~Vlv~~~~~~~~~s~~~~~~~~g~~----------~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~ 176 (1342)
+ +. .|+...-.+.+.... .+...+-. ..+..++.+ |++.+++.+... ..+.|++.+..
T Consensus 162 ~~~~~~~ii~~~~~yHG~t~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~iaaiiiEpv~ 234 (474)
T PLN02624 162 IPKNEAIIVSCCGCFHGRTLA--AISMSCDNEATRGFGPLLPGHLKVDFG-----DLDALEKIFEEDGDRIAAFLFEPIQ 234 (474)
T ss_pred CCCCCcEEEEECCCcCCCCHH--HhhcCCCccccccCCCCCCCceEeCCC-----CHHHHHHHHHhCCCCEEEEEECCcc
Confidence 1 33 355443222222111 11111100 011222332 788999888643 34567775544
Q ss_pred CC--ccc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC-CCcEEEecCCccCCCC--CeeEEEEechh
Q psy13354 177 YS--QYI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP-FADFITSTTHKSLRGP--RGGFILMKKKY 245 (1342)
Q Consensus 177 ~~--~~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~-~~Divv~S~sK~l~gp--~GG~iv~~~~l 245 (1342)
.+ ... .+++|.++|++||+++|+||+|. |....+..... .. .+|+++. +|.++++ +.|++++++++
T Consensus 235 ~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G~GrtG~~~a~~~~~i~pDiv~l--sK~lggG~~pigav~~~~~i 311 (474)
T PLN02624 235 GEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-GLARTGKMLACDWEEVRPDVVIL--GKALGGGVIPVSAVLADKDV 311 (474)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CcCcCcchhhHHhcCCCCCEEEe--cccccCCCCcceeeeecHHH
Confidence 33 122 39999999999999999999996 32112211110 11 2577764 6999543 23888898888
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cE-Eee-CCCCCeEEEEEcc
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IR-IVS-GGTKSHIILVDLR 321 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~-~~~-~~~~~~~v~i~~~ 321 (1342)
++.+.......++++ ++...+++.+.++.+.+. ...++..++.+++++.|.+.. ++ .+. ....+.++.+.+.
T Consensus 312 ~~~~~~~~~~~T~~g--~pl~~aaa~aaLe~l~~~--~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~ 387 (474)
T PLN02624 312 MLCIKPGEHGSTFGG--NPLASAVAMAALQVVQDE--KLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLN 387 (474)
T ss_pred HhHhccCCcCCCCCC--CHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEec
Confidence 877754333233332 334444444444544311 244566666777777776632 21 011 0112334444443
Q ss_pred CCC----CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 322 NKK----ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 322 ~~~----~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
... ...++...+ .++||++.+. + ...+|++.+..++.
T Consensus 388 ~~~~~~~~a~~~~~~L-~e~GV~v~p~-------~---~~~lR~~p~l~~t~ 428 (474)
T PLN02624 388 SPKLGPVSAYDVCLKL-KERGLLAKPT-------H---DTIIRLAPPLSISE 428 (474)
T ss_pred CCCcChHHHHHHHHHH-HhCCeEEecC-------C---CCEEEEECCccCCH
Confidence 321 123555554 5569999753 1 24699987665553
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-09 Score=132.76 Aligned_cols=302 Identities=13% Similarity=0.090 Sum_probs=169.0
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc---C-
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL---N- 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~---~- 111 (1342)
.+-.|.+.+|+.+.+. ... .. +.++ .. +....+.+++.+.+... ..+.|++|||+|+..+++... +
T Consensus 97 GH~~p~v~~Ai~~ql~-~l~--~~-~~~~-~~----~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~ 167 (459)
T PRK11522 97 GHRNPVVVSAVQNQLA-KQP--LH-SQEL-LD----PLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSP 167 (459)
T ss_pred CCCCHHHHHHHHHHHh-hCc--cc-cccc-CC----HHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhcc
Confidence 4556779999888875 221 11 1111 12 33444555777776543 456677799999999998652 1
Q ss_pred CC-CEEEEeeccCCccchhhHHhhhCCce-e---------EEEEecCCCCCCCCHHHHHHHHHh-----cCCeEEEEcCC
Q psy13354 112 PG-DTIMGMSLQEGGHLTHGMMLNMSGKW-F---------NSICYGLNKKEKIDYKKVEYLAKK-----NKPKLIIAGAS 175 (1342)
Q Consensus 112 pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~-~---------~~v~~~~~~~~~id~e~Le~~i~~-----~~~~liv~~~s 175 (1342)
+| ..|+...-.|.++-..... ..+.. + .+..++.+ |.+++++.+.. ...+.+++.+
T Consensus 168 ~gr~~ii~~~~~yHG~t~~~ls--~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~~~~iAavIvEp- 239 (459)
T PRK11522 168 RGKFTFIATSGAFHGKSLGALS--ATAKSTFRKPFMPLLPGFRHVPFG-----NIEAMRTALSECKKTGDDVAAVILEP- 239 (459)
T ss_pred CCCcEEEEecCCCCCCcHHHhh--hcCCcccccCCCCCCCCCcccCCC-----CHHHHHHHHHHhhccCCcEEEEEEec-
Confidence 22 3566654444333211111 11100 0 01112222 67888887753 2334555533
Q ss_pred CCC-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC--CeeEEEEec
Q psy13354 176 AYS-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP--RGGFILMKK 243 (1342)
Q Consensus 176 ~~~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp--~GG~iv~~~ 243 (1342)
..+ ....++++.++|++||+++|+||+|. |+--.+.... ... .+|++ +++|.+++. +-|++++++
T Consensus 240 v~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-G~GRtG~~~a~e~~gv~PDiv--t~gK~lggG~~Pigav~~~~ 316 (459)
T PRK11522 240 IQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQT-GMGRTGKMFACEHENVQPDIL--CLAKALGGGVMPIGATIATE 316 (459)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEecccee-cCCccchhhhhhccCCCCCEE--EechhhhCCCccceeEEEcH
Confidence 322 22249999999999999999999984 3211121111 111 26887 556999653 236677777
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcE-EeeC-CCCCeEEEEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIR-IVSG-GTKSHIILVD 319 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~-~~~~-~~~~~~v~i~ 319 (1342)
++++.+......+..+...+|..+|++.+.++.+.+. +..++..++.++|.+.|+++ .++ ++.. ...+.++.+.
T Consensus 317 ~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~--~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~gie 394 (459)
T PRK11522 317 EVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQ--NLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIE 394 (459)
T ss_pred HHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEE
Confidence 7777664321112222222677777777777776432 46788888889999888774 222 1110 1234566677
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+........+...+++ +||++.+.. .. ...+|+..+..++.
T Consensus 395 l~~~~~~~~i~~~l~~-~Gvl~~~~~----~~----~~~lr~~Ppl~~t~ 435 (459)
T PRK11522 395 FVDNEIGYNFASEMFR-QRVLVAGTL----NN----AKTIRIEPPLTLTI 435 (459)
T ss_pred ecCchHHHHHHHHHHH-CCeEEEecC----CC----CCEEEEECCccCCH
Confidence 6554323355555555 599997531 11 24689887776553
|
|
| >KOG0733|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=136.18 Aligned_cols=170 Identities=18% Similarity=0.233 Sum_probs=128.3
Q ss_pred CCCccccccchhhHHHHHHHHHcC------------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALDKK------------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~~~------------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
..+|+|+-+++++..+|.-+|-.. ..|.++|++||||||||.+|+++|++..
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag---------------- 570 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG---------------- 570 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc----------------
Confidence 347999999999999998888432 4467899999999999999999999876
Q ss_pred CCcchhhhccCCCccEEEEccCC--CcCH----HHHHHHHHHHhhcCccCCceEEEeccCccCC-----------HHHHH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAAS--TRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------HHAFN 517 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~--~~~~----~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~~~~~ 517 (1342)
.+|+.+.+.. +..+ ..+++++..+.. +.+-||++||+|.|. ...+|
T Consensus 571 -------------~NFisVKGPELlNkYVGESErAVR~vFqRAR~----saPCVIFFDEiDaL~p~R~~~~s~~s~RvvN 633 (802)
T KOG0733|consen 571 -------------ANFISVKGPELLNKYVGESERAVRQVFQRARA----SAPCVIFFDEIDALVPRRSDEGSSVSSRVVN 633 (802)
T ss_pred -------------CceEeecCHHHHHHHhhhHHHHHHHHHHHhhc----CCCeEEEecchhhcCcccCCCCchhHHHHHH
Confidence 3577766542 1222 346666665543 345699999999883 23577
Q ss_pred HHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhH-HHHHHHh
Q psy13354 518 AMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSA-LNLIATG 589 (1342)
Q Consensus 518 ~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~a-l~~La~~ 589 (1342)
.||--|+.- ...+.+|.+||+++.+++++++ |. .......|+.++...+|+...+..+..+++++ ++.|++.
T Consensus 634 qLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~ 711 (802)
T KOG0733|consen 634 QLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN 711 (802)
T ss_pred HHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc
Confidence 888777654 3467778889999999999996 44 56777888999999999999987666676655 6667764
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-09 Score=128.68 Aligned_cols=303 Identities=13% Similarity=0.070 Sum_probs=169.1
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHccC----
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLN---- 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~~---- 111 (1342)
..-.|.+.+|+.+.+.. .. +. +.++ .. +....+++++.+.+... ..++|++||++|+..+++....
T Consensus 90 Gh~hp~v~~Av~~ql~~-l~--~~-~~~~-~~----~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~ 160 (442)
T TIGR03372 90 GHRNPNVIAAVENQLAK-QP--LH-SQEL-LD----PLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSP 160 (442)
T ss_pred CCCCHHHHHHHHHHHHh-CC--Cc-cccc-CC----HHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhh
Confidence 55667799998888753 21 11 1111 12 23344556788776544 5567777999999999986521
Q ss_pred CC-CEEEEeeccCCccchhhHHhhh-----CCc---eeEEEEecCCCCCCCCHHHHHHHHHh-----cCCeEEEEcCCCC
Q psy13354 112 PG-DTIMGMSLQEGGHLTHGMMLNM-----SGK---WFNSICYGLNKKEKIDYKKVEYLAKK-----NKPKLIIAGASAY 177 (1342)
Q Consensus 112 pG-D~Vlv~~~~~~~~~s~~~~~~~-----~g~---~~~~v~~~~~~~~~id~e~Le~~i~~-----~~~~liv~~~s~~ 177 (1342)
+| ..|++....+.++......+.. .+. ...+..++.+ |.+.+++.+.. ...+.+++. |..
T Consensus 161 ~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~-----d~~~~~~~l~~~~~~~~~vAavIvE-pv~ 234 (442)
T TIGR03372 161 RGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG-----DIEAMLKALNECKKTGDDVAAIILE-PIQ 234 (442)
T ss_pred cCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC-----CHHHHHHHHHHHhcCCCcEEEEEEe-Ccc
Confidence 23 4677655444333221111100 000 0011122322 67777776642 234556653 333
Q ss_pred C-------cccCHHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCC--CCC-CCcEEEecCCccCCCC--CeeEEEEech
Q psy13354 178 S-------QYIDFERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPN--PVP-FADFITSTTHKSLRGP--RGGFILMKKK 244 (1342)
Q Consensus 178 ~-------~~~~l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp--~GG~iv~~~~ 244 (1342)
+ ....++++.++|++||+++|+||+|. +|-. +.... ... .+|+++ ++|.+++. +.|+++++++
T Consensus 235 g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRt--G~~~a~e~~gv~PDivt--~gK~lg~G~~Pigavv~~~~ 310 (442)
T TIGR03372 235 GEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRT--GKMFACEHEGVQPDILC--LAKALGGGVMPIGATIATEA 310 (442)
T ss_pred CCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcc--ccchhhhhcCCCCCeee--ehhhhcCCcccceEEEecHH
Confidence 2 22249999999999999999999984 3222 22111 111 268876 56999543 3477778888
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cE-Eee-CCCCCeEEEEEc
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IR-IVS-GGTKSHIILVDL 320 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~-~~~-~~~~~~~v~i~~ 320 (1342)
+++.+......+..+...+|..+|++.+.++.+.+. ++.++..+..+++.+.|++.. ++ .+. -...+.++.+.+
T Consensus 311 i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~--~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel 388 (442)
T TIGR03372 311 VFSVLFDNPFLHTTTFGGNPLACAAALATINELLEK--NLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEF 388 (442)
T ss_pred HHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEe
Confidence 888774321112222222567777777777766421 245666777777877776631 11 111 113356677777
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
........+...+++ +||++.+...+ ...+|+..+-..+.
T Consensus 389 ~~~~~~~~i~~~l~~-~Gvl~~~~~~~--------~~~lr~~Ppl~~t~ 428 (442)
T TIGR03372 389 RDNEIGYAFAKELFQ-QNILVAGTLNN--------AKSIRIEPPLTITI 428 (442)
T ss_pred CChHHHHHHHHHHHH-CCcEEeecCCC--------CCEEEEECCcccCH
Confidence 544323455666665 59999753211 23588877765553
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >KOG1942|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-10 Score=120.56 Aligned_cols=119 Identities=29% Similarity=0.392 Sum_probs=102.5
Q ss_pred EEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC-------------CCCChHHHhccEEEEEEcCCCHHHHHHHHH
Q psy13354 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE-------------PQKIPITVLSRCIQFNLKKMLHHDIVNNLC 568 (1342)
Q Consensus 502 vviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~-------------~~kl~~~L~sR~~~i~~~~l~~~el~~~l~ 568 (1342)
|++|||+|+|.-+.+..|-+.||.|-..+ +||++|+ |+-+++.+++|..++.-.++++++++++++
T Consensus 299 VLFIDEVhMLDiEcFTyL~kalES~iaPi-vifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii~ 377 (456)
T KOG1942|consen 299 VLFIDEVHMLDIECFTYLHKALESPIAPI-VIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQIIK 377 (456)
T ss_pred ceEeeehhhhhhHHHHHHHHHhcCCCCce-EEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHHH
Confidence 99999999999999999999999986555 6788764 457788999999999999999999999999
Q ss_pred HHHHhcCCCcchhHHHHHHHh-cCCcHHHHHHHHHHHHhh----cCCCCCHHHHHHHh
Q psy13354 569 YILNKENIKFETSALNLIATG-AQGSMRDALSLTDQAINY----SSEKITLNSMQEML 621 (1342)
Q Consensus 569 ~~~~~~g~~i~~~al~~La~~-~~g~lr~a~~~L~kl~~~----~~~~It~e~V~~~v 621 (1342)
.+++.+|+.++++++.+|++. +..++|-++++|.-+... ..+.|..++|+++-
T Consensus 378 ~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 378 IRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred HHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 999999999999999999996 467999999998743322 23458888888765
|
|
| >KOG0053|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-10 Score=131.41 Aligned_cols=212 Identities=19% Similarity=0.214 Sum_probs=147.1
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~ 145 (1342)
+++....++. .++.+.|+..+++++ ||..|+..++..++.+|++|+..+..|++....... ....|+....+
T Consensus 75 ~nPt~~~le~----~iaal~ga~~~l~fs-SGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~v-- 147 (409)
T KOG0053|consen 75 GNPTRDVLES----GIAALEGAAHALLFS-SGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFV-- 147 (409)
T ss_pred CCCchHHHHH----HHHHHhCCceEEEec-ccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeee--
Confidence 4555566666 899999999999999 999999999999999999999988888776554433 34556543433
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Di 222 (1342)
+.+ |++.++.++.+ +.++|++-.|.|| ...|+++|+++|+++|++||||+..+.+. ...++.. +||
T Consensus 148 d~~-----~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~-----~~~pL~lGADI 216 (409)
T KOG0053|consen 148 DVD-----DLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPY-----NQDPLPLGADI 216 (409)
T ss_pred chh-----hHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCccc-----ccChhhcCCCE
Confidence 444 67788888877 4566666556666 66699999999999999999999865432 2446665 999
Q ss_pred EEecCCccCCCCC---eeEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
++.|.+|+++|-. ||.++.+ +++...+..... ..++...|..+.. ..+. +. .+.-+.++..+++-.+.+.
T Consensus 217 V~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~--~lg~~~~p~~~~l--l~Rg-lk-tl~lRi~~~~ena~~~A~~ 290 (409)
T KOG0053|consen 217 VVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQE--DLGWCEDPFDLFL--LSRG-LK-TLHLRINKHSENALKIALL 290 (409)
T ss_pred EEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHH--HhcCCCCHHHHHH--HhcC-cc-hhhhhHHHHHHHHHHHHHH
Confidence 9999999995532 3888887 677766655321 1222223333222 2222 21 2333456667777777777
Q ss_pred HHhC
Q psy13354 299 LDQR 302 (1342)
Q Consensus 299 L~~~ 302 (1342)
|+..
T Consensus 291 Le~~ 294 (409)
T KOG0053|consen 291 LEAH 294 (409)
T ss_pred hhhC
Confidence 7764
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-09 Score=130.32 Aligned_cols=254 Identities=14% Similarity=0.145 Sum_probs=164.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHccC----C-----C--------------------
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVLN----P-----G-------------------- 113 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~~----p-----G-------------------- 113 (1342)
+..++....+|+++.+++++++|.+ ..++++ +||.||..++.+.-. | +
T Consensus 115 ~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~Ts-GGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~ 193 (608)
T TIGR03811 115 YESSPATSQMEEEVGKEFATLMGYKNGWGHIVA-DGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKE 193 (608)
T ss_pred cccCchHHHHHHHHHHHHHHHhCCCCCCeEEeC-ChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhccccccc
Confidence 4456677899999999999999987 345555 999999877665411 0 0
Q ss_pred -----------------------C------EEEEeeccCCccchhhHHhhhCCcee-EEEEecCCCCCCCCHHHHHHHHH
Q psy13354 114 -----------------------D------TIMGMSLQEGGHLTHGMMLNMSGKWF-NSICYGLNKKEKIDYKKVEYLAK 163 (1342)
Q Consensus 114 -----------------------D------~Vlv~~~~~~~~~s~~~~~~~~g~~~-~~v~~~~~~~~~id~e~Le~~i~ 163 (1342)
. .++ .+..+|++..+++...|.+. .++.+++++++++|++.|++.+.
T Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl---~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~ 270 (608)
T TIGR03811 194 IMDLLESAGDQIDEIKAHSARSGKDLQKLGKWL---VPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIR 270 (608)
T ss_pred ccccccccccchhhhhhhccccccccccceEEE---ECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHH
Confidence 0 223 23356888888888888764 34567888899999999998886
Q ss_pred hc----CC-eEEEEcCCC--CCcccCHHHHHHHH---HHcCC--EEEEEcccchhh---hhcC-----------------
Q psy13354 164 KN----KP-KLIIAGASA--YSQYIDFERFYHIA---KNINS--YFMVDMAHYAGL---IAAG----------------- 211 (1342)
Q Consensus 164 ~~----~~-~liv~~~s~--~~~~~~l~~I~~la---~~~gi--~LIvDea~~~g~---~~~~----------------- 211 (1342)
+. .| ..||.+.+. .+...|+++|+++| +++|+ |++||+|++... +...
T Consensus 271 ~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~ 350 (608)
T TIGR03811 271 KLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEY 350 (608)
T ss_pred HHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccc
Confidence 42 23 334443333 33667999999999 66887 699999987532 1110
Q ss_pred -CC--------------CCCCCCCcEEEecCCccCCCCCe-eEEEEec-hhHHHHhhccCCc---------------ccc
Q psy13354 212 -EY--------------PNPVPFADFITSTTHKSLRGPRG-GFILMKK-KYKKIINSAVFPG---------------IQG 259 (1342)
Q Consensus 212 -~~--------------~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~-~l~~~l~~~~~~~---------------~~~ 259 (1342)
.+ ...++.+|.++..+||++..|.+ |+++.++ .+.+.+.. ..++ ...
T Consensus 351 ~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~-~a~Yl~~~~~~~p~~~g~~~le 429 (608)
T TIGR03811 351 GVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISY-FATYVFEKGADIPALLGAYILE 429 (608)
T ss_pred cccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhc-CcchhccccccCccccccccee
Confidence 00 00134589999999999978888 8777765 33332211 1111 111
Q ss_pred CC-cHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHhCC-------cEE--eeCCCCCeEEEEEccCCC
Q psy13354 260 GP-LMHVIAAKAVAFKEV--LKPDFKIYQKQVVKNAKILSKILDQRG-------IRI--VSGGTKSHIILVDLRNKK 324 (1342)
Q Consensus 260 ~~-~~~~~~Aaa~al~~~--l~~~~~~~~~~l~~~a~~l~~~L~~~g-------~~~--~~~~~~~~~v~i~~~~~~ 324 (1342)
++ ......+++.++..+ ..+++.++.++..++++++.+.|.+.+ +++ .. ++..+++.+.+...+
T Consensus 430 gSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~-~pdlniV~Fr~~~~g 505 (608)
T TIGR03811 430 GSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLT-KPDFNMVDYVFNEKG 505 (608)
T ss_pred cCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecC-CCCcceEEEEEecCC
Confidence 11 112244445555544 455888999999999999999998843 444 33 345666666665444
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.8e-10 Score=126.82 Aligned_cols=232 Identities=19% Similarity=0.176 Sum_probs=155.7
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCC
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNP 112 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~p 112 (1342)
-+-+.+++++++++..... .+.. . .++ ..+.....+. .+.+.++...|+..+.+++ +.+.|+..++.++..+
T Consensus 34 lG~s~~~~e~iea~~~~~~-~~v~-L---e~~l~~g~~~~R~~-~~~~~~~~~~~aea~~ivn-nn~aAVll~~~al~~~ 106 (395)
T COG1921 34 LGRSLYSPEAIEAMKEAMR-APVE-L---ETDLKTGKRGARLT-ELAELLCGLTGAEAAAIVN-NNAAAVLLTLNALAEG 106 (395)
T ss_pred CCCccCCHHHHHHHHHHhc-ccce-e---eeecccchhhHHHH-HHHHHHhcccchhheeeEC-CcHHHHHHHHhhhccC
Confidence 3568899999999888774 3321 1 111 1222222333 3445666666677777777 8888999888888774
Q ss_pred CCEEEE--eeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHH
Q psy13354 113 GDTIMG--MSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYH 188 (1342)
Q Consensus 113 GD~Vlv--~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~ 188 (1342)
+..|+. ..++ ++++.....++..|+ +.+.+. ....-...+++.++.+++..++.++.++++ ...+++++++
T Consensus 107 ~EvVis~g~lV~-gg~~~v~d~~~~aG~--~l~EvG--~tn~t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~~~~l~~ 181 (395)
T COG1921 107 KEVVVSRGELVE-GGAFRVPDIIRLAGA--KLVEVG--TTNRTHLKDYELAINENTALLLKVHSSNYGFTGMLSEEELVE 181 (395)
T ss_pred CeEEEEcccccc-CCCCChhHHHHHcCC--EEEEec--ccCcCCHHHHHHHhccCCeeEEEEeeccccccccccHHHHHH
Confidence 444444 3333 678888888888888 445333 334457889999999988888888888776 4448899999
Q ss_pred HHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccCCcHHHHH
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIA 267 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~ 267 (1342)
+||++|+++++|.+.+.-.-........+. .+|++++|..|.|+||.+|+|++++++++.++........-. .-+..+
T Consensus 182 ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkKelI~~lq~~~l~Ralrv-~K~tla 260 (395)
T COG1921 182 IAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQSHPLKRALRV-DKETLA 260 (395)
T ss_pred HHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCccceEechHHHHHHHHhhhhhhhhhc-CcHhHH
Confidence 999999999999976432110000011112 379999999999999999999999999999876422221111 124566
Q ss_pred HHHHHHHHhcc
Q psy13354 268 AKAVAFKEVLK 278 (1342)
Q Consensus 268 Aaa~al~~~l~ 278 (1342)
++.+++..+..
T Consensus 261 ~l~~aLe~y~~ 271 (395)
T COG1921 261 ALEAALELYLQ 271 (395)
T ss_pred HHHHHHHHHcC
Confidence 66667766654
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-10 Score=129.16 Aligned_cols=222 Identities=17% Similarity=0.161 Sum_probs=139.2
Q ss_pred cccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC--CCCcchhhhccCCCc
Q psy13354 391 NTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC--GKCSVCVKIDNGCFM 468 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c--~~~~~~~~~~~~~~~ 468 (1342)
..=.++..+...+...+..+ ++.++++||+|+|||++++.+++.+.+...... ...+| ..+.....+...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~--~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~---~~~~~~~~~~~~l~~i~~~--- 94 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQR--EGFILITGEVGAGKTTLIRNLLKRLDQERVVAA---KLVNTRVDAEDLLRMVAAD--- 94 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcC--CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEe---eeeCCCCCHHHHHHHHHHH---
Confidence 33344566777777777654 456899999999999999999998864210000 00000 001001111100
Q ss_pred cEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC---CCcEEEEEEeCCCC-----
Q psy13354 469 DYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP---PKYIKFILATTEPQ----- 540 (1342)
Q Consensus 469 d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p---~~~~vlIl~t~~~~----- 540 (1342)
..+..........++.+...+......+++.+++|||++.++....+.|....+-. ...+.++++. .++
T Consensus 95 --lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g-~~~~~~~l 171 (269)
T TIGR03015 95 --FGLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVG-QPEFRETL 171 (269)
T ss_pred --cCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcC-CHHHHHHH
Confidence 01111111112223333333333333456679999999999987777665443321 1222334443 222
Q ss_pred --CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcC----CCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc----C
Q psy13354 541 --KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKEN----IKFETSALNLIATGAQGSMRDALSLTDQAINYS----S 609 (1342)
Q Consensus 541 --kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g----~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~----~ 609 (1342)
.....+.+|. ..+++++++.+++..++..+++..| ..+++++++.|++.++|++|.+...++.+...+ .
T Consensus 172 ~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~ 251 (269)
T TIGR03015 172 QSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEK 251 (269)
T ss_pred cCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCC
Confidence 1234677785 7899999999999999999998765 369999999999999999999999998876654 3
Q ss_pred CCCCHHHHHHHhcc
Q psy13354 610 EKITLNSMQEMLSI 623 (1342)
Q Consensus 610 ~~It~e~V~~~v~~ 623 (1342)
+.|+.++|++++..
T Consensus 252 ~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 252 REIGGEEVREVIAE 265 (269)
T ss_pred CCCCHHHHHHHHHH
Confidence 45999999988854
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-09 Score=132.50 Aligned_cols=308 Identities=14% Similarity=0.036 Sum_probs=167.8
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHccC----
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLN---- 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~~---- 111 (1342)
..-.|.+.+++.+.+.. .. +.....+ .. +...++++++.+.+... +.+.|++||++|++.+++....
T Consensus 57 Gh~~p~v~~ai~~q~~~-~~--~~~~~~~-~~----~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~ 128 (423)
T PRK05964 57 GHNHPYIDQAIREQLDR-LD--HVIFAGF-TH----EPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRN 128 (423)
T ss_pred CCCCHHHHHHHHHHHhh-CC--Ccccccc-CC----HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 44567799998888752 21 1110011 11 33344566788777422 4556667999999999986521
Q ss_pred ---CC-CEEEEeeccCCccchhhHHhhhC--------C--ceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcC-
Q psy13354 112 ---PG-DTIMGMSLQEGGHLTHGMMLNMS--------G--KWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGA- 174 (1342)
Q Consensus 112 ---pG-D~Vlv~~~~~~~~~s~~~~~~~~--------g--~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~- 174 (1342)
+| .+|+.....|.++......+... + .....++++.++....+++.+++.+.+. ..+.|++.+
T Consensus 129 ~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~ 208 (423)
T PRK05964 129 RGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPL 208 (423)
T ss_pred cCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence 33 46776555444432222111100 0 1123344443211112377888888643 334555533
Q ss_pred -CCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC--CeeEEEEec
Q psy13354 175 -SAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP--RGGFILMKK 243 (1342)
Q Consensus 175 -s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp--~GG~iv~~~ 243 (1342)
.... ....+++|.++|++||+++|+||+|. |....+... .... .+|+++ ++|+++|+ +.|++++++
T Consensus 209 i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~gr~G~~~a~~~~~v~pDi~~--~~K~l~gG~~p~~av~~~~ 285 (423)
T PRK05964 209 VQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIAT-GFGRTGTLFACEQAGVSPDIMC--LSKGLTGGYLPLAATLCTA 285 (423)
T ss_pred cccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcCcchhHHHhcCCCCCeee--eehhhhcCcccceEEEEcH
Confidence 1111 33469999999999999999999984 221112111 1111 257764 56999554 238899999
Q ss_pred hhHHHHhhc--cCCccccC--CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-CCCCeEEE
Q psy13354 244 KYKKIINSA--VFPGIQGG--PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSG-GTKSHIIL 317 (1342)
Q Consensus 244 ~l~~~l~~~--~~~~~~~~--~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-~~~~~~v~ 317 (1342)
++++.+... ......++ ..+|..++++.+..+.+.. +...++..++.+++.+.|++. .++.+.. ...+.++.
T Consensus 286 ~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~--~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~ 363 (423)
T PRK05964 286 EIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFED--EPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGA 363 (423)
T ss_pred HHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEE
Confidence 998887532 11111111 2245555555555554431 234577777788888888764 2222111 12345556
Q ss_pred EEccCCC---CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 318 VDLRNKK---ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 318 i~~~~~~---~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+.+.... ....+...++ ++||++.+. .+.+|++.+..++.
T Consensus 364 i~l~~~~~~~~~~~l~~~l~-~~Gv~v~~~-----------~~~lR~~p~l~~t~ 406 (423)
T PRK05964 364 VELDRPVLERDGPALRAFAL-ERGVLLRPL-----------GNTIYLMPPYIITA 406 (423)
T ss_pred EEeccCcchhHHHHHHHHHH-HCCeEEEec-----------CCEEEEeCCcccCH
Confidence 6665432 1234555555 469999753 12589988876664
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-09 Score=128.14 Aligned_cols=302 Identities=12% Similarity=0.035 Sum_probs=167.7
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc------
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL------ 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~------ 110 (1342)
.+-.|.+.+++.+.+.. .. +....+ .. +...++.+++.+..+..+.+.+++||++|++.+++...
T Consensus 55 Gh~~p~v~~ai~~q~~~-~~--~~~~~~--~~----~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~ 125 (408)
T PRK04612 55 GHNDPDLVAALTEQAGK-LW--HTSNVF--YS----APPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQ 125 (408)
T ss_pred CCCCHHHHHHHHHHHHh-cc--cccccc--CC----HHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhh
Confidence 55677799998888753 21 111111 12 22334555777766433566777799999999998653
Q ss_pred C--CC-CEEEEeeccCCccchhhHHhhh-C--Ccee-----EEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 111 N--PG-DTIMGMSLQEGGHLTHGMMLNM-S--GKWF-----NSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 111 ~--pG-D~Vlv~~~~~~~~~s~~~~~~~-~--g~~~-----~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+ ++ .+|+.....|.+.........- . ...+ .+..++. .|++.+++.+...+++++++.|....
T Consensus 126 g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~aavi~eP~~~~g 200 (408)
T PRK04612 126 GRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-----NDVEALEAAMAGGDVAAVMLEPIQGEG 200 (408)
T ss_pred CCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-----CCHHHHHHhhCCCCEEEEEECCccCCC
Confidence 1 12 3577655444333221111100 0 0000 0111122 27888988886556677777553322
Q ss_pred ---c--ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCC-CeeEEEEechhHHHHhh
Q psy13354 179 ---Q--YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGP-RGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 ---~--~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~~l~~ 251 (1342)
. ...+++|.++|++||+++|+||+|. |....+....... ....-+.+++|++++. +-|++++++++++.+..
T Consensus 201 g~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~a~~~~~~~pdi~t~~K~l~~G~piga~~~~~~~~~~~~~ 279 (408)
T PRK04612 201 GVMPAAPGFLARVRALCDQHDALLVLDEIQC-GMGRTGTLFAHWQEQVTPDIVTLAKALGGGFPIGAMLAGPKVAETMQF 279 (408)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCchhhhhhcCCCCCEEEEcchhcCCCceEEEEECHHHHhhhcC
Confidence 1 2259999999999999999999986 2211222111111 1122344667999431 22888888888887765
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEeeC-CCCCeEEEEEccCC--CCC
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVSG-GTKSHIILVDLRNK--KIT 326 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~~-~~~~~~v~i~~~~~--~~~ 326 (1342)
....+++++ +|..++++.+.++...+ .++.++..++.+++.+.|+++. +.++.. ...+.++.+.+... ...
T Consensus 280 ~~~~~t~~~--~p~~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~a 355 (408)
T PRK04612 280 GAHGTTFGG--NPLAAAVARVALRKLAS--PQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHAGQA 355 (408)
T ss_pred CCcCCCCCC--CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchhhHH
Confidence 444444443 45566666666666542 3467788888888888887642 221110 12234555555321 112
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
..+... +.++||++.+. + ...+|+..+-..+
T Consensus 356 ~~i~~~-l~~~Gvlv~~~-------g---~~~lRl~Ppl~it 386 (408)
T PRK04612 356 GAILDL-AAEHGLLLLQA-------G---PDVLRFVPALNLT 386 (408)
T ss_pred HHHHHH-HHHCCeEEeeC-------C---CCEEEEcCCccCC
Confidence 334444 45569998642 1 2468987666544
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-09 Score=137.58 Aligned_cols=300 Identities=13% Similarity=0.073 Sum_probs=183.5
Q ss_pred eecCCC----CcHHHHHHHhHHHHhccccCCCCCCccCC--cchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHH
Q psy13354 33 IASENY----TSLAVMEAQGTLLTNKYAEGYPGKRYYGG--CKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQA 104 (1342)
Q Consensus 33 ~a~~n~----l~~~v~eal~~~l~~~~~~g~~~~~~~~~--~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~ 104 (1342)
+.+..+ +|+.+.+++.+... .|. .|. -|.. ..+..+.....+..+++++|.+ ++.++. ++|.+.++
T Consensus 107 fiG~G~y~~~~P~~v~~~i~~~~~-~~T-ayt---PYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d-~aTAaaea 180 (993)
T PLN02414 107 YIGMGYYNTHVPPVILRNILENPG-WYT-QYT---PYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLD-EGTAAAEA 180 (993)
T ss_pred ccCCCCCCccCCHHHHHHHHhChH-HHh-hcC---CCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecC-ChHHHHHH
Confidence 444444 67777788776542 121 111 1211 2344444555777999999998 344455 88888888
Q ss_pred HHHHc-cCCC--CEEEEeeccCCccchhhHH-hhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 105 VFFSV-LNPG--DTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 105 al~al-~~pG--D~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
+++++ +.+| |+|++++..|+.....+.. .+..|+.+..+ +.+.. + ...+ ....++++.+++. .
T Consensus 181 ~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v--~~~~~---~------~~~~-~v~~vlvq~P~~~G~ 248 (993)
T PLN02414 181 MAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVA--DEKDF---D------YSSG-DVCGVLVQYPATDGE 248 (993)
T ss_pred HHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEe--cchhh---c------cccC-ceEEEEEecCCCCeE
Confidence 87777 4544 7899988888877665543 34567655555 43311 1 0111 2223445455444 5
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccC-----CCCCeeEEEEechhHHHHhhcc
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSL-----RGPRGGFILMKKKYKKIINSAV 253 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l-----~gp~GG~iv~~~~l~~~l~~~~ 253 (1342)
..|+++|+++||++|+++++ .++..+...- .++-+ .+||++++.+||. +||..||+++++++...+....
T Consensus 249 v~dv~~I~~~ah~~GaL~iV-aad~lal~~l---~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~Pgri 324 (993)
T PLN02414 249 VLDYAEFVKNAHANGVKVVM-ATDLLALTML---KPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGRI 324 (993)
T ss_pred EcCHHHHHHHHHHcCCEEEE-EECHHHhcCC---CCHhhccCcEEEECCCccccCCCCCCCCeeEEEECHHHHhhCCCcc
Confidence 66999999999999999999 7776654411 11212 4899999999998 3444499999998765443111
Q ss_pred CCc-----------------------cccCCcHHHHHHHHHHH-----HHhccchHHHHHHHHHHHHHHHHHHHHhCCcE
Q psy13354 254 FPG-----------------------IQGGPLMHVIAAKAVAF-----KEVLKPDFKIYQKQVVKNAKILSKILDQRGIR 305 (1342)
Q Consensus 254 ~~~-----------------------~~~~~~~~~~~Aaa~al-----~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~ 305 (1342)
..+ -.++++.....++.+++ ..+...+++++.+++.+++.++.+.|...|++
T Consensus 325 VG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~ 404 (993)
T PLN02414 325 IGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQ 404 (993)
T ss_pred cCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 000 01233332222222111 22344578888899999999999999988988
Q ss_pred EeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 306 IVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 306 ~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+..+ .....+.+.++ .+.++.++++ ++||.++... .+.+|+|++..+|.
T Consensus 405 ~~~~-~~f~~vt~~~~---~~~~v~~~L~-~~gI~l~~~~----------~~~lrvs~~e~~T~ 453 (993)
T PLN02414 405 VQSL-PFFDTVKVKCS---DADAIADAAA-KVGINLRVVD----------ANTVTVSFDETTTL 453 (993)
T ss_pred cCCC-CCcCeEEEecC---CHHHHHHHHH-HCCCeeEEec----------CCeEEEEeeccCCH
Confidence 7543 33445556654 2345555555 5599777432 23599999998885
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-09 Score=130.08 Aligned_cols=294 Identities=13% Similarity=0.054 Sum_probs=160.5
Q ss_pred CceeeeecC-----CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASE-----NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~-----n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..|.+.++. .+-.|.+.+++.+.+.. . .. .+... +....+++++.+.+.....+++++||++|+
T Consensus 51 ~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~-~-~~-----~~~~~----~~~~~la~~L~~~~~~~~~v~~~~sGseA~ 119 (426)
T PRK00062 51 EYIDYVGSWGPMILGHAHPEVVEAVIEAAEK-G-LS-----FGAPT----ELEVELAELVIELVPSIEMVRMVNSGTEAT 119 (426)
T ss_pred EEEEcccchhhhhcCCCCHHHHHHHHHHHHh-C-Cc-----CCCCC----HHHHHHHHHHHHhCCCCCEEEEecCHHHHH
Confidence 456665542 25667799999888864 2 11 11222 233345557777653223455666999999
Q ss_pred HHHHHHccC--CCCEEEEeeccCCccchhhHHh----------hh-CCce----eEEEEecCCCCCCCCHHHHHHHHHh-
Q psy13354 103 QAVFFSVLN--PGDTIMGMSLQEGGHLTHGMML----------NM-SGKW----FNSICYGLNKKEKIDYKKVEYLAKK- 164 (1342)
Q Consensus 103 ~~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~----------~~-~g~~----~~~v~~~~~~~~~id~e~Le~~i~~- 164 (1342)
..+++.... .+++|++....+.++....... .. .+.. ...+.++.+ |++.+++.+..
T Consensus 120 e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~~ 194 (426)
T PRK00062 120 MSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYN-----DLEAVEELFEEY 194 (426)
T ss_pred HHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCC-----CHHHHHHHHHhC
Confidence 999997633 3577887665555442111110 00 0100 011222222 78899888864
Q ss_pred -cCCeEEEEcC--CCCCccc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCC-CCCCC-CCcEEEecCCccCCCC-
Q psy13354 165 -NKPKLIIAGA--SAYSQYI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEY-PNPVP-FADFITSTTHKSLRGP- 234 (1342)
Q Consensus 165 -~~~~liv~~~--s~~~~~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~-~~~l~-~~Divv~S~sK~l~gp- 234 (1342)
.+.+.|++.+ ++.+... .+++|.++|++||+++|+||+|. |+..+... ...+. .+|+ .+++|.+++.
T Consensus 195 ~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~r~g~~~~~~~~~~~pDi--~~~gK~l~~G~ 271 (426)
T PRK00062 195 GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GFRVALGGAQGYYGVTPDL--TTLGKIIGGGL 271 (426)
T ss_pred CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-ccccCCccHHHHhCCCcch--HhhhhHhhCCC
Confidence 2344555532 2222222 39999999999999999999996 33221111 11111 1465 4678999432
Q ss_pred CeeEEEEechhHHHHhhccCCccc-cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcEEeeC
Q psy13354 235 RGGFILMKKKYKKIINSAVFPGIQ-GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIRIVSG 309 (1342)
Q Consensus 235 ~GG~iv~~~~l~~~l~~~~~~~~~-~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~~~~~ 309 (1342)
+.|++++++++++.+......+.+ +...++..++++.+.++.+.+. +..++..++.+++++.|++ .++.....
T Consensus 272 p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vr 349 (426)
T PRK00062 272 PVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEP--GFYEELEALTKRLAEGLKEAAKKAGIPLTVN 349 (426)
T ss_pred cceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 248889999998888642222221 1123455555566666655432 3566667777777777664 35443221
Q ss_pred CCCCeEEEEEccCCC----------C---CHHHHHHHHHHCCceeeec
Q psy13354 310 GTKSHIILVDLRNKK----------I---TGKIAESILESANIICNKN 344 (1342)
Q Consensus 310 ~~~~~~v~i~~~~~~----------~---~~~~~~~ll~~~GI~v~~~ 344 (1342)
+ .+.++.+.+.... . ...+...+++ +||++.+.
T Consensus 350 g-~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~Gv~v~~~ 395 (426)
T PRK00062 350 R-VGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLD-EGVYLAPS 395 (426)
T ss_pred E-ecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHH-CCeEeecC
Confidence 2 2334444443210 0 1245555554 59998764
|
|
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-10 Score=127.91 Aligned_cols=234 Identities=17% Similarity=0.236 Sum_probs=149.6
Q ss_pred CccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHh-------ccCCCCCCCCcccCCCCCCcchhh
Q psy13354 389 NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL-------NCIGIDGNGGITSQPCGKCSVCVK 461 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L-------~~~~~~~~~~~~~~~c~~~~~~~~ 461 (1342)
.|..++||++++..|.-++-.....+ ++|.|++|+|||++++.++..+ .|+. +..-..||..|..|..
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~-vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~r~ 76 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGG-VMVMGDRGTGKSTAVRALAALLPEIKAVAGCPF----NSSPSDPEMMCEEVRI 76 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCe-EEEEcCCCCCHHHHHHHHHHhhcccccccCCCC----CCCCCCccccChHHhh
Confidence 48999999999988866666655555 7899999999999999999987 3321 1223578889999987
Q ss_pred hccC--------CCccEEEEc--cC--CCcCHHHHHHHHHH----HhhcCcc-CCceEEEeccCccCCHHHHHHHHHhhc
Q psy13354 462 IDNG--------CFMDYIEMD--AA--STRGINEMAQLLEQ----TIYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLE 524 (1342)
Q Consensus 462 ~~~~--------~~~d~~~i~--~~--~~~~~~~i~~ii~~----~~~~p~~-~~~rvviIDE~~~L~~~~~~~Ll~~Le 524 (1342)
.... ....|..+- .+ ...|.-++...+.. ....+++ ++.-++++||++.++...++.|++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~ 156 (337)
T TIGR02030 77 RVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAA 156 (337)
T ss_pred hhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHH
Confidence 5321 011122211 11 11122233333221 1112233 455699999999999999999999997
Q ss_pred CCC-------------CcEEEEEEeCCCC-CChHHHhccE-EEEEEcCCCH-HHHHHHHHHHHH----------------
Q psy13354 525 EPP-------------KYIKFILATTEPQ-KIPITVLSRC-IQFNLKKMLH-HDIVNNLCYILN---------------- 572 (1342)
Q Consensus 525 ~p~-------------~~~vlIl~t~~~~-kl~~~L~sR~-~~i~~~~l~~-~el~~~l~~~~~---------------- 572 (1342)
+.. ..+++|.+.|-.+ .+.+++.+|+ ..+.+..++. ++..+++.....
T Consensus 157 ~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~ 236 (337)
T TIGR02030 157 SGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQ 236 (337)
T ss_pred hCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhh
Confidence 642 2333333333223 5788999999 6777887765 555555544211
Q ss_pred -------------hcCCCcchhHHHHHHHh---cCC-cHHHHHHHHHHHHhhc--C--CCCCHHHHHHHhccCcHH
Q psy13354 573 -------------KENIKFETSALNLIATG---AQG-SMRDALSLTDQAINYS--S--EKITLNSMQEMLSIIDQK 627 (1342)
Q Consensus 573 -------------~~g~~i~~~al~~La~~---~~g-~lr~a~~~L~kl~~~~--~--~~It~e~V~~~v~~~~~~ 627 (1342)
-..+.+++++++++++. ++. ++|..+.++.-+.+++ . ..|+.+||+.++......
T Consensus 237 ~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 237 EALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred hcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 13566888888887764 344 5788887776544433 3 359999999877544433
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.3e-10 Score=140.99 Aligned_cols=219 Identities=20% Similarity=0.220 Sum_probs=149.1
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchh
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~ 460 (1342)
|..+-+--.++.++|.+..++.+.+.+...... .+||+||||+|||++++.++..+.... .+.....|
T Consensus 176 l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~-n~LLvGppGvGKT~lae~la~~i~~~~----vP~~l~~~------- 243 (758)
T PRK11034 176 LNQLARVGGIDPLIGREKELERAIQVLCRRRKN-NPLLVGESGVGKTAIAEGLAWRIVQGD----VPEVMADC------- 243 (758)
T ss_pred HHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCC-CeEEECCCCCCHHHHHHHHHHHHHhcC----CCchhcCC-------
Confidence 333344556778999999999999999886544 468999999999999999998864211 00000011
Q ss_pred hhccCCCccEEEEccC------CC--cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC---------HHHHHHHHHhh
Q psy13354 461 KIDNGCFMDYIEMDAA------ST--RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT---------HHAFNAMLKTL 523 (1342)
Q Consensus 461 ~~~~~~~~d~~~i~~~------~~--~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~---------~~~~~~Ll~~L 523 (1342)
.++.++.+ .. .....++.++..+.. .+..|++|||+|.+. .+..+.|..++
T Consensus 244 --------~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~----~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L 311 (758)
T PRK11034 244 --------TIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL 311 (758)
T ss_pred --------eEEeccHHHHhcccchhhhHHHHHHHHHHHHHh----cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 12222211 11 112335566655543 234599999999771 22345566677
Q ss_pred cCCCCcEEEEEEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHH----hcCCCcchhHHHHHHHhcCC--
Q psy13354 524 EEPPKYIKFILATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILN----KENIKFETSALNLIATGAQG-- 592 (1342)
Q Consensus 524 e~p~~~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~----~~g~~i~~~al~~La~~~~g-- 592 (1342)
+. ..+.+|.+|+..+ ...++|.+|++.+.+.+|+.++...+|+.... .+++.++++++..+++.+..
T Consensus 312 ~~--g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 312 SS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred hC--CCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 65 4677888887654 35789999999999999999999999886554 36889999999998876543
Q ss_pred ----cHHHHHHHHHHHHhhc--------CCCCCHHHHHHHhccCc
Q psy13354 593 ----SMRDALSLTDQAINYS--------SEKITLNSMQEMLSIID 625 (1342)
Q Consensus 593 ----~lr~a~~~L~kl~~~~--------~~~It~e~V~~~v~~~~ 625 (1342)
-+.+++.+|+.+++.. ...|+.++|.+++....
T Consensus 390 ~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 390 NDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred cCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 5668999999887543 12367777777765443
|
|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.2e-10 Score=128.29 Aligned_cols=234 Identities=17% Similarity=0.248 Sum_probs=140.2
Q ss_pred cCCCCccccccchhhHHHHHHHH-HcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC-----Ccc
Q psy13354 385 YRPSNFNTLIGQNHISKSLINAL-DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK-----CSV 458 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l-~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~-----~~~ 458 (1342)
-.|..|++++||+++++.+.-++ ..| . +++||+|+||+|||++++.+++.+.+.... ...+|+. |..
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~~-~-~~vLl~G~pG~gKT~lar~la~llP~~~~~-----e~~~~~~~~~~~~~~ 74 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAIDPG-I-GGVLVFGDRGTGKSTAVRALAALLPLIKAV-----EGCPVNSARPEDCPE 74 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhccC-C-CcEEEEcCCCCCHHHHHHHHHHHCCCcchh-----cccccccCcccCCcc
Confidence 35889999999999999887554 344 3 348999999999999999999999753211 1122222 111
Q ss_pred hhhhccCC----CccEEEEcc--CC--CcCHHHHHHHHHH----HhhcCcc-CCceEEEeccCccCCHHHHHHHHHhhcC
Q psy13354 459 CVKIDNGC----FMDYIEMDA--AS--TRGINEMAQLLEQ----TIYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEE 525 (1342)
Q Consensus 459 ~~~~~~~~----~~d~~~i~~--~~--~~~~~~i~~ii~~----~~~~p~~-~~~rvviIDE~~~L~~~~~~~Ll~~Le~ 525 (1342)
+....... ...|..+-. +. ..|.-++...+.. ....+++ ++.-++++||++.++...++.|++.+++
T Consensus 75 ~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee 154 (334)
T PRK13407 75 WAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQS 154 (334)
T ss_pred cccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHc
Confidence 11110000 011221111 11 1121223322211 1122233 3445999999999999999999999976
Q ss_pred CC-------------CcEEEEEEeCCCC-CChHHHhccE-EEEEEcCCCH-HHHHHHHHHHHH-----------------
Q psy13354 526 PP-------------KYIKFILATTEPQ-KIPITVLSRC-IQFNLKKMLH-HDIVNNLCYILN----------------- 572 (1342)
Q Consensus 526 p~-------------~~~vlIl~t~~~~-kl~~~L~sR~-~~i~~~~l~~-~el~~~l~~~~~----------------- 572 (1342)
.. ...++|.+.|-.+ .+.+++..|+ ..+.+.++.. ++..+++.....
T Consensus 155 ~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~ 234 (334)
T PRK13407 155 GENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDM 234 (334)
T ss_pred CCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhcccccccc
Confidence 42 3344444444323 5778999998 6777777665 554445443211
Q ss_pred ------------hcCCCcchhHHHHHHHhc---C-CcHHHHHHHHHHHHhhc--C--CCCCHHHHHHHhccCc
Q psy13354 573 ------------KENIKFETSALNLIATGA---Q-GSMRDALSLTDQAINYS--S--EKITLNSMQEMLSIID 625 (1342)
Q Consensus 573 ------------~~g~~i~~~al~~La~~~---~-g~lr~a~~~L~kl~~~~--~--~~It~e~V~~~v~~~~ 625 (1342)
-..+.++++.++++++.+ + .++|..+.++.-+..++ . ..|+.+||+++.....
T Consensus 235 ~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl 307 (334)
T PRK13407 235 QLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMAL 307 (334)
T ss_pred CCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHhh
Confidence 134678888888887753 3 47777777665544443 2 3499999987774433
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=130.12 Aligned_cols=263 Identities=19% Similarity=0.249 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--C---
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--K--- 149 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~--- 149 (1342)
..++.+..++.+|+++..+.++|.|.||..++++++.+||.|+ +..++|-|....+-..|. .++++... +
T Consensus 72 i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VL---vdRN~HKSi~~glilaGa--~Pvyl~p~~np~~g 146 (557)
T COG1982 72 IKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVL---VDRNCHKSIHHGLILAGA--TPVYLEPSRNPLYG 146 (557)
T ss_pred HHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEE---ecCCccHHHHHHHHHcCC--ceEEecCCCCcccc
Confidence 3446669999999999999886777799999999999999999 555777776666666676 55554432 3
Q ss_pred -CCCCCHHHHHHHHHhcCC--eEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC-CC-CCCcEE
Q psy13354 150 -KEKIDYKKVEYLAKKNKP--KLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN-PV-PFADFI 223 (1342)
Q Consensus 150 -~~~id~e~Le~~i~~~~~--~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~-~l-~~~Div 223 (1342)
-+.++.+.+.+.+.++.. +++++.+++|- ...++++|.+.++.+++|+.+|++|..-.......+. .. ..+|++
T Consensus 147 i~ggI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~ 226 (557)
T COG1982 147 IIGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFV 226 (557)
T ss_pred ccCCCCHHHHHHHHHhChhhheeEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEE
Confidence 256899999987766432 45555555555 5559999999999999999999998753322222222 11 236899
Q ss_pred EecCCccCCCCCe-eEEEEec--h-hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG-GFILMKK--K-YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIY----QKQVVKNAKIL 295 (1342)
Q Consensus 224 v~S~sK~l~gp~G-G~iv~~~--~-l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~----~~~l~~~a~~l 295 (1342)
+.|.||.+++..- .++-.++ . -.+++......+..++|..+..+++-.| ........+.. .+...+.++.+
T Consensus 227 tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~~h~STSPsY~l~ASlD~A-r~~~~~~G~~l~~~~~~~~i~~r~~~ 305 (557)
T COG1982 227 TQSTHKLLAALSQASMIHVKDGRAVNHERFNEALMMHQSTSPSYPLMASLDVA-RMQEGNAGRELWQEVIDEAIDFRKAL 305 (557)
T ss_pred EechhhhhhhhhhhHHHhhCCCccCCHHHHHHHHHHHccCCchHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999966544 5555553 1 1233443323334455666666666553 33322233333 45556666666
Q ss_pred HHHHHhCC-cEEeeCCC--------------------CCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 296 SKILDQRG-IRIVSGGT--------------------KSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 296 ~~~L~~~g-~~~~~~~~--------------------~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
++...+.+ |++..++. +-.-+.+.+++.+.+...+..+|+++||....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~e~gii~e~ 374 (557)
T COG1982 306 RRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLREHGIIPEE 374 (557)
T ss_pred HHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecCCCCCcHHHHHHHHHHcCCeeee
Confidence 66666654 55544221 11124455667888889999999888988764
|
|
| >KOG2004|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=138.51 Aligned_cols=179 Identities=21% Similarity=0.299 Sum_probs=124.3
Q ss_pred cccccchhhHHHHHHHHHcCC-----CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccC
Q psy13354 391 NTLIGQNHISKSLINALDKKR-----LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNG 465 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~~~-----~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 465 (1342)
+|..|.+++++.+.+.|.-++ -+..++|+||||+|||++++.||+.|+.. ++.++-|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk------------------FfRfSvG 472 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK------------------FFRFSVG 472 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc------------------eEEEecc
Confidence 678999999999999886443 34689999999999999999999999842 1222223
Q ss_pred CCccEEEEccCCCcCHHH-HHHHHHHHhhcCccCCceEEEeccCccCCH----HHHHHHHHhhcC-------------C-
Q psy13354 466 CFMDYIEMDAASTRGINE-MAQLLEQTIYAPINARYKIYVIDEVHMLTH----HAFNAMLKTLEE-------------P- 526 (1342)
Q Consensus 466 ~~~d~~~i~~~~~~~~~~-i~~ii~~~~~~p~~~~~rvviIDE~~~L~~----~~~~~Ll~~Le~-------------p- 526 (1342)
--.|+.++.+...+.+.. -..+++.+... .-...+++|||+|++.. +-..+||..|+- |
T Consensus 473 G~tDvAeIkGHRRTYVGAMPGkiIq~LK~v--~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~ 550 (906)
T KOG2004|consen 473 GMTDVAEIKGHRRTYVGAMPGKIIQCLKKV--KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPV 550 (906)
T ss_pred ccccHHhhcccceeeeccCChHHHHHHHhh--CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhcccccc
Confidence 223444444433333322 11233333222 12345999999999963 235677776652 2
Q ss_pred -CCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----------cCCCcchhHHHHHHHh
Q psy13354 527 -PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----------ENIKFETSALNLIATG 589 (1342)
Q Consensus 527 -~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----------~g~~i~~~al~~La~~ 589 (1342)
-+.++||+++|..+.++++|++|..+++++.+..+|-.++..+++-. +.++|+++++..|.++
T Consensus 551 DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~ 624 (906)
T KOG2004|consen 551 DLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIER 624 (906)
T ss_pred chhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHH
Confidence 24789999999999999999999999999999999988887776543 2345777776666553
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-10 Score=146.31 Aligned_cols=197 Identities=19% Similarity=0.264 Sum_probs=130.8
Q ss_pred cccccchhhHHHHHHHHHcC--------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 391 NTLIGQNHISKSLINALDKK--------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~~--------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
+.++||+++++.+.+++... +..+++||+||+|+|||++|+.+|+.+.+.. .+|..|..+.-.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~---------~~~~~~d~s~~~ 579 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE---------DAMIRLDMSEYM 579 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc---------cceEEEEchhcc
Confidence 56899999999999998632 2235799999999999999999999997531 111111111000
Q ss_pred ccCCCccEEEEccC--CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC-----------CCc
Q psy13354 463 DNGCFMDYIEMDAA--STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP-----------PKY 529 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~--~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p-----------~~~ 529 (1342)
.. +. +..+-++ ...+.++...+.+.+...| ++||++||++++..+.++.|++.+|+. -.+
T Consensus 580 ~~--~~-~~~l~g~~~gyvg~~~~~~l~~~~~~~p----~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~ 652 (821)
T CHL00095 580 EK--HT-VSKLIGSPPGYVGYNEGGQLTEAVRKKP----YTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKN 652 (821)
T ss_pred cc--cc-HHHhcCCCCcccCcCccchHHHHHHhCC----CeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCc
Confidence 00 00 0000000 1111222233444444444 479999999999999999999999974 257
Q ss_pred EEEEEEeCCCC-------------------------------------CChHHHhccE-EEEEEcCCCHHHHHHHHHHHH
Q psy13354 530 IKFILATTEPQ-------------------------------------KIPITVLSRC-IQFNLKKMLHHDIVNNLCYIL 571 (1342)
Q Consensus 530 ~vlIl~t~~~~-------------------------------------kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~ 571 (1342)
+++|+++|--. .+.|.+.+|+ .++.|.|++.+++.+++...+
T Consensus 653 ~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 653 TLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred eEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 88999876311 0224688998 899999999999999988776
Q ss_pred Hh-------cC--CCcchhHHHHHHHhc---CCcHHHHHHHHHH
Q psy13354 572 NK-------EN--IKFETSALNLIATGA---QGSMRDALSLTDQ 603 (1342)
Q Consensus 572 ~~-------~g--~~i~~~al~~La~~~---~g~lr~a~~~L~k 603 (1342)
.+ .| +.+++++.++|++.. ....|-+.+.+++
T Consensus 733 ~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~ 776 (821)
T CHL00095 733 KNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMR 776 (821)
T ss_pred HHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 64 33 468999999999963 2345555555544
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-09 Score=127.63 Aligned_cols=308 Identities=13% Similarity=0.063 Sum_probs=167.3
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHcc-CCC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVL-NPG 113 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~-~pG 113 (1342)
..-.|.+.+++.+.+.. .. +..... ... +...++.+++.+..... ..++|.+||++|++.+++... -+|
T Consensus 55 Gh~~p~v~~ai~~ql~~-~~--~~~~~~-~~~----~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tg 126 (421)
T PRK09792 55 GHRHPDLVAAVEQQLQQ-FT--HTAYQI-VPY----ESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTG 126 (421)
T ss_pred CCCCHHHHHHHHHHHHh-cc--CcccCc-cCC----HHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcC
Confidence 45677799998888753 21 111111 112 22334555677776422 355566699999999998762 223
Q ss_pred -CEEEEeeccCCccchhhHHhh------hCC-----ceeEEEEecCCCCCC---CCHHHHHHHHHh----cCCeEEEEcC
Q psy13354 114 -DTIMGMSLQEGGHLTHGMMLN------MSG-----KWFNSICYGLNKKEK---IDYKKVEYLAKK----NKPKLIIAGA 174 (1342)
Q Consensus 114 -D~Vlv~~~~~~~~~s~~~~~~------~~g-----~~~~~v~~~~~~~~~---id~e~Le~~i~~----~~~~liv~~~ 174 (1342)
.+|+...-.|.++......+. ..+ ..+..++++.+.++. -+++.+++.+.. .+.+.+++.+
T Consensus 127 r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EP 206 (421)
T PRK09792 127 RPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEP 206 (421)
T ss_pred CCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEcc
Confidence 467765544433321111110 001 112333443322221 134677777763 3456777755
Q ss_pred CCCC------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CC-CCCcEEEecCCccCCCC-CeeEEEEech
Q psy13354 175 SAYS------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PV-PFADFITSTTHKSLRGP-RGGFILMKKK 244 (1342)
Q Consensus 175 s~~~------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l-~~~Divv~S~sK~l~gp-~GG~iv~~~~ 244 (1342)
...+ ....+++|.++|++||+++|+||++..... .+.... .+ ..+|+ .+++|++++. +-|+++++++
T Consensus 207 vq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr-~G~~~a~~~~~~~pDi--~t~gK~l~~G~pigav~~~~~ 283 (421)
T PRK09792 207 VQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFAR-TGKLFAMDHYADKPDL--MTMAKSLAGGMPLSGVVGNAN 283 (421)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCC-CCchhHHHhcCCCCcE--EEeehhhcCCCceEEEEEcHH
Confidence 3222 222499999999999999999999863211 222111 11 13575 4667999432 2299999999
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCC-CeEEEEEcc
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTK-SHIILVDLR 321 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~-~~~v~i~~~ 321 (1342)
+++.+.......++++ +|..++++.+..+.+.+. +..+++.+..+++.+.|+.+ .++.+....+ +.++|+.+.
T Consensus 284 i~~~~~~~~~~~T~~g--npl~~aaa~a~l~~l~~~--~~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~ 359 (421)
T PRK09792 284 IMDAPAPGGLGGTYAG--NPLAVAAAHAVLNIIDKE--SLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFN 359 (421)
T ss_pred HHhccCCCCcCCCCCC--CHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHhCCCcceecccceEEEEEec
Confidence 8887765433334433 455566666666665422 34455556666666666542 1221122233 678888886
Q ss_pred CCC-------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 322 NKK-------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 322 ~~~-------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.. ....+...+++ +||++.+. + +. ...+|+..+...+
T Consensus 360 ~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~~---g-~~----~~~irl~P~l~i~ 404 (421)
T PRK09792 360 DPQTGEPSAAIAQKIQQRALA-QGLLLLTC---G-AY----GNVIRFLYPLTIP 404 (421)
T ss_pred CCccCCcchHHHHHHHHHHHH-CCcEEeec---C-CC----CCEEEEeCCCcCC
Confidence 431 12345555555 59998521 1 10 2468987766444
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-10 Score=143.34 Aligned_cols=193 Identities=16% Similarity=0.255 Sum_probs=126.3
Q ss_pred cccccchhhHHHHHHHHHc--------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC---cch
Q psy13354 391 NTLIGQNHISKSLINALDK--------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC---SVC 459 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~--------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~---~~~ 459 (1342)
..++||+++++.+.+++.. +++...+||+||+|+|||++|+.+|+.+++.- ....|... +.+
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~-------i~id~se~~~~~~~ 530 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIEL-------LRFDMSEYMERHTV 530 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCc-------EEeechhhcccccH
Confidence 3589999999999999863 23334699999999999999999999986321 01111111 011
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC-----------C
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP-----------K 528 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~-----------~ 528 (1342)
..+. +..+.++.. +.-..+.+.....| +.||++||++++..+.++.|++.|++.. .
T Consensus 531 ~~Li-G~~~gyvg~--------~~~g~L~~~v~~~p----~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~r 597 (758)
T PRK11034 531 SRLI-GAPPGYVGF--------DQGGLLTDAVIKHP----HAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred HHHc-CCCCCcccc--------cccchHHHHHHhCC----CcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCC
Confidence 1110 111111111 11111222222233 4699999999999999999999998641 4
Q ss_pred cEEEEEEeCCC-------------------------CCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHh-------cC
Q psy13354 529 YIKFILATTEP-------------------------QKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNK-------EN 575 (1342)
Q Consensus 529 ~~vlIl~t~~~-------------------------~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~-------~g 575 (1342)
++++|+++|.- ..+.|.+..|+ .++.|.+++.+++.+++...+.+ .|
T Consensus 598 n~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~ 677 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred CcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 67789988721 12447888998 69999999999999988766542 34
Q ss_pred --CCcchhHHHHHHHhc---CCcHHHHHHHHHH
Q psy13354 576 --IKFETSALNLIATGA---QGSMRDALSLTDQ 603 (1342)
Q Consensus 576 --~~i~~~al~~La~~~---~g~lr~a~~~L~k 603 (1342)
+.++++++++|++.. ....|-+.+.+++
T Consensus 678 i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 678 VSLEVSQEARDWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_pred CCceECHHHHHHHHHhCCCCCCCCchHHHHHHH
Confidence 468899999999753 2344555555444
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-09 Score=136.73 Aligned_cols=270 Identities=13% Similarity=0.074 Sum_probs=171.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc-cCCC--CEEEEeeccCCccchhhHH-hhhCCceeE
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV-LNPG--DTIMGMSLQEGGHLTHGMM-LNMSGKWFN 141 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al-~~pG--D~Vlv~~~~~~~~~s~~~~-~~~~g~~~~ 141 (1342)
.++..+.....+..+++++|.+ ++.++. ++|++.+++++++ ..++ |+|++++..||.....+.. .+..|+.+.
T Consensus 116 sQG~Leal~~~Qt~la~LtG~~~anaSl~d-~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~ 194 (954)
T PRK05367 116 SQGRLEALLNFQTMVADLTGLEIANASLLD-EATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVV 194 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhhccccc-cHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEE
Confidence 3444455555777999999998 345555 8888888888776 4554 8999888888776555433 355677555
Q ss_pred EEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-C
Q psy13354 142 SICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-F 219 (1342)
Q Consensus 142 ~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~ 219 (1342)
.+ +.+++. + ......++++.+++. ...|+++|+++||++|+++++|..+....... .+-+ .
T Consensus 195 ~~--~~~~d~--~---------~~~~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~----~pge~G 257 (954)
T PRK05367 195 VG--DAAKAL--D---------HDDVFGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLT----PPGEMG 257 (954)
T ss_pred Ee--cCccCC--C---------cccEEEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCC----ChhhcC
Confidence 44 443221 1 123344555555555 55599999999999999999998764333211 1222 4
Q ss_pred CcEEEecCCcc-----CCCCCeeEEEEechhHHHHhhccCCc-----------------------cccCCcHHH---HHH
Q psy13354 220 ADFITSTTHKS-----LRGPRGGFILMKKKYKKIINSAVFPG-----------------------IQGGPLMHV---IAA 268 (1342)
Q Consensus 220 ~Divv~S~sK~-----l~gp~GG~iv~~~~l~~~l~~~~~~~-----------------------~~~~~~~~~---~~A 268 (1342)
+||++++.+|| ++||..||+++++++.+.+......+ -.++++... ..+
T Consensus 258 aDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a 337 (954)
T PRK05367 258 ADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLA 337 (954)
T ss_pred CCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHH
Confidence 89999999999 65664499999998777664221111 012222111 111
Q ss_pred HHHH--HHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccC
Q psy13354 269 KAVA--FKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSI 346 (1342)
Q Consensus 269 aa~a--l~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~ 346 (1342)
+.++ +..+...+++++.++...++.++.+.|...|+++... .....+.+.++ ....++.+++++ +||.+....
T Consensus 338 ~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~-~~f~~~~~~~~--~~~~~i~~~l~~-~gi~~~~~~- 412 (954)
T PRK05367 338 VMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHD-SFFDTLTVEVG--GDAAAVLARALA-AGINLRRVD- 412 (954)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCC-CCCCeEEEeCC--CCHHHHHHHHHH-CCceecccc-
Confidence 1111 1223455788889999999999999998888887542 22234445543 234556666655 599884321
Q ss_pred CCCCCCccccccccccccccccc
Q psy13354 347 PNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 347 p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+.+|++++..+|.
T Consensus 413 ---------~~~l~is~~e~~t~ 426 (954)
T PRK05367 413 ---------DDHVGISLDETTTR 426 (954)
T ss_pred ---------CCEEEEEecccCCH
Confidence 23599999998774
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-09 Score=126.55 Aligned_cols=295 Identities=16% Similarity=0.094 Sum_probs=164.8
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc------CC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL------NP 112 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~------~p 112 (1342)
-.|.+.+++.+.+. +...+.. . ...+.+.++.+++.+..+.+. +++++||++|++.++..+. ++
T Consensus 53 ~~p~v~~a~~~q~~-~~~~~~~--~------~~~~~~~~la~~l~~~~~~~~-v~f~~SGseA~e~Aik~ar~~~~~~~~ 122 (395)
T PRK03715 53 CNPGMVEALAAQAE-KLINPSP--A------FYNEPMAKLAGLLTQHSCFDK-VFFANSGAEANEGAIKLARKWGRKHKN 122 (395)
T ss_pred CCHHHHHHHHHHHH-hcccccc--c------ccCHHHHHHHHHHhhccCCCE-EEEeCCcHHHHHHHHHHHHHHhhccCC
Confidence 45779999888874 2221111 1 112455656667776655444 4555599999999998874 12
Q ss_pred C-CEEEEeeccCCccchhhHHhhhCCce-eEEEEecCCCCC----CCCHHHHHHHHHhcCCeEEEEcCCCCC-------c
Q psy13354 113 G-DTIMGMSLQEGGHLTHGMMLNMSGKW-FNSICYGLNKKE----KIDYKKVEYLAKKNKPKLIIAGASAYS-------Q 179 (1342)
Q Consensus 113 G-D~Vlv~~~~~~~~~s~~~~~~~~g~~-~~~v~~~~~~~~----~id~e~Le~~i~~~~~~liv~~~s~~~-------~ 179 (1342)
| ++|++....+.+.... .+...+.. .+....+....+ ..|++++++.+.+ ..++|++.+ ..+ .
T Consensus 123 ~r~~ii~~~~~yHG~t~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aavi~Ep-v~~~gG~~~~~ 198 (395)
T PRK03715 123 GAYEIITFDHSFHGRTLA--TMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITD-KTVAVMLEP-VQGEGGVIPAT 198 (395)
T ss_pred CCcEEEEECCCcCCChHH--HHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCC-CceEEEEeC-CcCCCCCccCC
Confidence 3 4666655443333211 11222210 000000100000 1378888888864 455566644 222 1
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC-CeeEEEEechhHHHHhhccCC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP-RGGFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~~l~~~~~~ 255 (1342)
...+++|.++|++||+++|+||+|. |+...+... ..+. .+|+++ ++|.+++. +.|++++++++.. +......
T Consensus 199 ~~~l~~l~~l~~~~~~llI~DEv~t-G~GRtG~~~a~~~~gv~PDi~t--~gK~lg~G~p~~av~~~~~i~~-~~~~~~~ 274 (395)
T PRK03715 199 REFMQQLRALTKQHGLLLIVDEVQT-GCGRTGTLFAYELSGIEPDIMT--LGKGIGGGVPLAALLAKAEVAV-FEAGDQG 274 (395)
T ss_pred HHHHHHHHHHHHHcCCEEEEecccc-CCCCCcchhhHhhcCCCCceee--ehhhhhCCcceEEEEEcccccc-ccCCCcC
Confidence 2239999999999999999999987 421122211 1111 258764 56999552 3377788887753 2221122
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
.+++ .+|..++++.+.++.+.+ +++.++..++.+++.+.|++. ++..+. ..+.++.+.+... ....+.
T Consensus 275 ~T~~--g~pl~~aaala~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~i~~vr--G~Glm~~i~l~~~--~~~~~~ 346 (395)
T PRK03715 275 GTYN--GNPLMTAVGVAVISQLLA--PGFLEGVRARGEYLKEKLLELSEERGLEGER--GEGLLRALLLGKD--IGPQIV 346 (395)
T ss_pred CCCC--CCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHhhcCCcCeEE--cceeEEEEEecCc--hHHHHH
Confidence 2333 246677777777776642 346788888888998888763 433222 2356677777542 122233
Q ss_pred HHHHHC---CceeeeccCCCCCCCccccccccccccccccc
Q psy13354 332 SILESA---NIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 332 ~ll~~~---GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
..+.+. ||++.+.. ...+|++.+..+|.
T Consensus 347 ~~~~~~~~~Gi~~~~~~----------~~~lR~~p~l~~t~ 377 (395)
T PRK03715 347 EKARDMQPDGLLLNAPR----------PNLLRFMPALNVTT 377 (395)
T ss_pred HHHHhccCCCEEEeecC----------CCEEEEeCCcccCH
Confidence 333344 99886421 13589988887664
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.7e-10 Score=133.11 Aligned_cols=193 Identities=19% Similarity=0.269 Sum_probs=132.8
Q ss_pred cccccchhhHHHHHHHHH-----cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccC
Q psy13354 391 NTLIGQNHISKSLINALD-----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNG 465 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~-----~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 465 (1342)
.|..|.+.+++.+.+-+. ++.-++.++|.||||+|||++++.||+.++.. +..++-|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk------------------fvR~sLG 384 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK------------------FVRISLG 384 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC------------------EEEEecC
Confidence 568899999998877763 33445789999999999999999999999842 1111111
Q ss_pred CCccEEEEccCCCcCHH----HHHHHHHHHhhcCccCCceEEEeccCccCCHH----HHHHHHHhhcC------------
Q psy13354 466 CFMDYIEMDAASTRGIN----EMAQLLEQTIYAPINARYKIYVIDEVHMLTHH----AFNAMLKTLEE------------ 525 (1342)
Q Consensus 466 ~~~d~~~i~~~~~~~~~----~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~----~~~~Ll~~Le~------------ 525 (1342)
---|-.++.+...+.+. .+-+-+..+.. ...|+++||+|+++.+ -..+||..|+-
T Consensus 385 GvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~-----~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLe 459 (782)
T COG0466 385 GVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV-----KNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLE 459 (782)
T ss_pred ccccHHHhccccccccccCChHHHHHHHHhCC-----cCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhcccc
Confidence 11122222222222222 22222222222 2349999999999643 45788877752
Q ss_pred -C--CCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHH-----hcC-----CCcchhHHHHHHHhc--
Q psy13354 526 -P--PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILN-----KEN-----IKFETSALNLIATGA-- 590 (1342)
Q Consensus 526 -p--~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~-----~~g-----~~i~~~al~~La~~~-- 590 (1342)
| -+++.||.++|..+.++.+|++|..+++++.++++|-.++.++++- .+| +.++++++..|.+.-
T Consensus 460 v~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTR 539 (782)
T COG0466 460 VPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTR 539 (782)
T ss_pred CccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhH
Confidence 1 2578999999999999999999999999999999999888777653 334 469999999998863
Q ss_pred CCcHHHHHHHHHHHHh
Q psy13354 591 QGSMRDALSLTDQAIN 606 (1342)
Q Consensus 591 ~g~lr~a~~~L~kl~~ 606 (1342)
+.-.|.+...+.+++.
T Consensus 540 EAGVR~LeR~i~ki~R 555 (782)
T COG0466 540 EAGVRNLEREIAKICR 555 (782)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 4566666666666553
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-08 Score=124.48 Aligned_cols=307 Identities=13% Similarity=0.114 Sum_probs=159.7
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC----CCCce-EecCCHHHHHHHHHHHcc-
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN----AEAAN-VQPHSGSQANQAVFFSVL- 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g----~~~~v-i~~~sGs~A~~~al~al~- 110 (1342)
.+-.|.+.+++.+.+.. .. +.....+ .. +....+.+++.+.+. .+..+ ++++||++|++.+++...
T Consensus 54 Gh~~p~v~~ai~~ql~~-~~--~~~~~~~-~~----~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~ 125 (425)
T PRK09264 54 GHNNPVLKQALIDYLQR-DG--ITHGLDM-HT----TAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARK 125 (425)
T ss_pred CCCCHHHHHHHHHHHHh-cc--ccccccc-Cc----HHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHH
Confidence 45667799999888753 11 1111111 12 223334456666542 22234 445699999999998762
Q ss_pred -CCCCEEEEeeccCCccchhhHHhh-----hC--C---ceeEEEEecCCCCCC-CCHHHHHHHHHhc-----CCeEEEEc
Q psy13354 111 -NPGDTIMGMSLQEGGHLTHGMMLN-----MS--G---KWFNSICYGLNKKEK-IDYKKVEYLAKKN-----KPKLIIAG 173 (1342)
Q Consensus 111 -~pGD~Vlv~~~~~~~~~s~~~~~~-----~~--g---~~~~~v~~~~~~~~~-id~e~Le~~i~~~-----~~~liv~~ 173 (1342)
....+|+...-.|.++-.....+. .. + ..+..++++...... -|++++++.+.+. ..+.|++.
T Consensus 126 ~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~E 205 (425)
T PRK09264 126 VTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVE 205 (425)
T ss_pred hcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEe
Confidence 223567765444433321111110 00 1 112333332110000 1667788877642 23455553
Q ss_pred CCCCC-------cccCHHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe---eEEEE
Q psy13354 174 ASAYS-------QYIDFERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG---GFILM 241 (1342)
Q Consensus 174 ~s~~~-------~~~~l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G---G~iv~ 241 (1342)
+ ..+ ....+++|.++|++||+++|+||+|. +|..+......... .+|+++ ++|.+ ++.| |++++
T Consensus 206 p-v~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t--~~K~l-~~~G~pigav~~ 281 (425)
T PRK09264 206 T-VQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVT--LSKSI-SGYGLPMALVLI 281 (425)
T ss_pred c-ccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEE--ecccc-CCCccceEEEEE
Confidence 3 222 33479999999999999999999985 22111100001111 258764 46999 5434 88898
Q ss_pred echhHHHHhhccCCccccCCcHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHHHHHHHhC--CcE--EeeCCCCCeEE
Q psy13354 242 KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFK-EVLKPDFKIYQKQVVKNAKILSKILDQR--GIR--IVSGGTKSHII 316 (1342)
Q Consensus 242 ~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~-~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~--~~~~~~~~~~v 316 (1342)
++++ ..+.......++++ +|..++++.+.. +... -.++.+++.++.+++.+.|.++ .++ +......+.+.
T Consensus 282 ~~~i-~~~~~~~~~~T~~g--np~~~aaa~a~l~~~~~--~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~ 356 (425)
T PRK09264 282 KPEL-DVWKPGEHNGTFRG--NNLAFVTATAALEEYWS--DDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQ 356 (425)
T ss_pred chhh-hccCCCccCCCCCC--CHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhCCCceecceecccEE
Confidence 8876 33332222223332 233333443333 4332 1245677777888888877653 121 11112235677
Q ss_pred EEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 317 LVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 317 ~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++.+.+......+...+++ +||.+.+.... ..++|++.+..++.
T Consensus 357 ~i~l~~~~~~~~l~~~~~~-~Gv~~~~~~~~--------~~~lr~~p~l~~t~ 400 (425)
T PRK09264 357 GIDFGDGELAGKIAAEAFE-NGLIIETSGPE--------DEVVKLLPPLTIDE 400 (425)
T ss_pred EEEecChHHHHHHHHHHHH-CCCEEeccCCC--------CCEEEEeCCCCCCH
Confidence 8887654333455555555 59998753111 24688887766553
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-10 Score=127.47 Aligned_cols=152 Identities=11% Similarity=0.140 Sum_probs=113.5
Q ss_pred CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCC------CcCHHH
Q psy13354 410 KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINE 483 (1342)
Q Consensus 410 ~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~ 483 (1342)
-+.|..++||||||||||.+|+++++++++ .++.+++++ ..+...
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~-----------------------------~~i~vsa~eL~sk~vGEsEk~ 195 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGI-----------------------------EPIVMSAGELESENAGEPGKL 195 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-----------------------------CeEEEEHHHhhcCcCCcHHHH
Confidence 367789999999999999999999999974 355665532 223356
Q ss_pred HHHHHHHHhhcC-ccCCceEEEeccCccCCH-----------HH-HHHHHHhhcCC--------------CCcEEEEEEe
Q psy13354 484 MAQLLEQTIYAP-INARYKIYVIDEVHMLTH-----------HA-FNAMLKTLEEP--------------PKYIKFILAT 536 (1342)
Q Consensus 484 i~~ii~~~~~~p-~~~~~rvviIDE~~~L~~-----------~~-~~~Ll~~Le~p--------------~~~~vlIl~t 536 (1342)
+++++..+.... ..+..-||+|||+|.+.. .. ...|+..+++| ...+.+|.++
T Consensus 196 IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTT 275 (413)
T PLN00020 196 IRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTG 275 (413)
T ss_pred HHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeC
Confidence 888888776432 234567999999997621 11 24677766643 3567888899
Q ss_pred CCCCCChHHHhc--cEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCc
Q psy13354 537 TEPQKIPITVLS--RCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGS 593 (1342)
Q Consensus 537 ~~~~kl~~~L~s--R~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~ 593 (1342)
|+++.++++|++ |+..+ +..|+.++..++++.+++..++ +.+.+..|+....|-
T Consensus 276 Nrpd~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 276 NDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTFPGQ 331 (413)
T ss_pred CCcccCCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCCC
Confidence 999999999998 77443 4689999999999998888764 577788888877664
|
|
| >KOG0737|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=6e-10 Score=125.05 Aligned_cols=187 Identities=24% Similarity=0.305 Sum_probs=131.8
Q ss_pred CccccccchhhHHHHHHHHH----------cC---CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 389 NFNTLIGQNHISKSLINALD----------KK---RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~----------~~---~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
+|+|+-|.+.+++.|.+.+- .+ +.+.++|+|||||||||.+|+++|++..+
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga---------------- 153 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA---------------- 153 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC----------------
Confidence 67777777777777766652 12 34568999999999999999999999874
Q ss_pred CcchhhhccCCCccEEEEccCCCc--CHHHHHHHHHHHhhcCccCCceEEEeccCccCC-------HHHH----H---HH
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTR--GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-------HHAF----N---AM 519 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~--~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-------~~~~----~---~L 519 (1342)
.|+.+..+... .-.+-..++....+.|..=.+.+++|||++.+- .++. + .+
T Consensus 154 -------------~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~ 220 (386)
T KOG0737|consen 154 -------------NFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMAL 220 (386)
T ss_pred -------------CcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 24444444322 223556666666666665667899999999663 1111 1 22
Q ss_pred HHhhcC-CCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCC-cHHH
Q psy13354 520 LKTLEE-PPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQG-SMRD 596 (1342)
Q Consensus 520 l~~Le~-p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g-~lr~ 596 (1342)
.+=|.. ....++++.+||++..+..++.+|. .+++..-|+..+..++|+-+++.+.+. ++-.+..+++.+.| +-++
T Consensus 221 WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSD 299 (386)
T KOG0737|consen 221 WDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSD 299 (386)
T ss_pred hccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHH
Confidence 232333 3345656667888899999999998 889999999999999999999998876 55558889998877 4455
Q ss_pred HHHHHHHHH
Q psy13354 597 ALSLTDQAI 605 (1342)
Q Consensus 597 a~~~L~kl~ 605 (1342)
+.+++..++
T Consensus 300 LkelC~~Aa 308 (386)
T KOG0737|consen 300 LKELCRLAA 308 (386)
T ss_pred HHHHHHHHh
Confidence 555554444
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.6e-09 Score=111.13 Aligned_cols=327 Identities=15% Similarity=0.100 Sum_probs=182.4
Q ss_pred cCceeeeecCCCCcHHHHHHHhHHHHhccccCCCC--CCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHH-
Q psy13354 27 NNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPG--KRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQ- 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~--~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~- 100 (1342)
...+.+..++...=|++-+...+...+....+... -..|.+..+...|.+++.+.+.+.+|+. .-+..+ +||+
T Consensus 30 ~g~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalT-nGSQs 108 (417)
T COG3977 30 PGAIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALT-NGSQS 108 (417)
T ss_pred CCceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeec-CCccc
Confidence 34566667666666665555555444333222111 1346778888899999999999999986 444555 5555
Q ss_pred HHHHHHHHcc---CCCC--EEEE-eeccCCccchhhHHhhhCCceeEEEEecC----CC----CCCCCHHHHHHHHHhcC
Q psy13354 101 ANQAVFFSVL---NPGD--TIMG-MSLQEGGHLTHGMMLNMSGKWFNSICYGL----NK----KEKIDYKKVEYLAKKNK 166 (1342)
Q Consensus 101 A~~~al~al~---~pGD--~Vlv-~~~~~~~~~s~~~~~~~~g~~~~~v~~~~----~~----~~~id~e~Le~~i~~~~ 166 (1342)
+.+.++..+. ..|+ .|+. ..++|.++...+ .-+- .+|.+.. .+ .+.+|.+++.-. ..
T Consensus 109 ~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~----l~~d--~fVs~kP~iel~~~g~FKY~vDF~~l~i~---e~ 179 (417)
T COG3977 109 AFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAG----LEED--LFVSAKPNIELLPAGQFKYHVDFEHLHIG---ES 179 (417)
T ss_pred hHHHHHHHhcCccCCCcceeEeeccChhhccccccc----cCcc--ceeeccCCcccccccceeeccCHHHcccc---cc
Confidence 8888877773 2444 3444 233343332211 0000 1111111 11 134566666532 34
Q ss_pred CeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC----CCCCCcEEEecCCccCCCCCe-
Q psy13354 167 PKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN----PVPFADFITSTTHKSLRGPRG- 236 (1342)
Q Consensus 167 ~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~----~l~~~Divv~S~sK~l~gp~G- 236 (1342)
...|+++-|.|| +..++.+|.++|++||+++++|.||+.-+- +..+. .+..--+.++|+||. |.+|
T Consensus 180 ~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP--~iifsd~~~~w~~NiilC~SLSK~--GLPG~ 255 (417)
T COG3977 180 TGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFP--GIIFSDATPLWNENIILCMSLSKL--GLPGS 255 (417)
T ss_pred cceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCC--ceecccccccCCCCEEEEeehhhc--CCCCc
Confidence 556666666655 333799999999999999999999875321 11111 111124678899997 4555
Q ss_pred --eEEEEechhHHHHhhccCCccc-cCCcHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHhCCcEEeeC
Q psy13354 237 --GFILMKKKYKKIINSAVFPGIQ-GGPLMHVIAAKAVAFKEVLKPDFK----IYQKQVVKNAKILSKILDQRGIRIVSG 309 (1342)
Q Consensus 237 --G~iv~~~~l~~~l~~~~~~~~~-~~~~~~~~~Aaa~al~~~l~~~~~----~~~~~l~~~a~~l~~~L~~~g~~~~~~ 309 (1342)
|.++++++++..+.+...--.. .+..-++.++-...-.+.+.-.-+ -++++.+.....++..|.+..+.+..
T Consensus 256 R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHk- 334 (417)
T COG3977 256 RCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHK- 334 (417)
T ss_pred ceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeec-
Confidence 9999999999888764211111 111112222211111111110001 12333444444555555554555543
Q ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeecc--CCCCCCCc-ccccccccccccccc
Q psy13354 310 GTKSHIILVDLRNKKITGKIAESILESANIICNKNS--IPNDPEKP-YFTSGIRLGSSAITT 368 (1342)
Q Consensus 310 ~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~--~p~~~~~~-~~~~~lRi~~~~~~t 368 (1342)
|.+.-+.|+.+.+...+.+.+.+.|+..||.+.|+. +|+.+..+ -...++|+++....+
T Consensus 335 pEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~ 396 (417)
T COG3977 335 PEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPE 396 (417)
T ss_pred CCcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEecCCCHH
Confidence 677788898888877777777777777799999865 34443210 012468887766433
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.9e-10 Score=143.07 Aligned_cols=199 Identities=16% Similarity=0.226 Sum_probs=134.7
Q ss_pred cccccchhhHHHHHHHHHc-------CCCC-cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 391 NTLIGQNHISKSLINALDK-------KRLH-HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~-------~~~~-~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
+.++||+.+++.+.+++.. ...| ..+||+||+|+|||.+|+.+++.+.... .+..+-.|..+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~----------~~~~~~dmse~ 635 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE----------QNLITINMSEF 635 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC----------cceEEEeHHHh
Confidence 4689999999999888853 1222 3589999999999999999999986210 01111112111
Q ss_pred ccCCCccEEEEccCC--CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC-----------Cc
Q psy13354 463 DNGCFMDYIEMDAAS--TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP-----------KY 529 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~~--~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~-----------~~ 529 (1342)
..... +..+-++. ..+-+.-..+.+.+...| +.||++||++++..+.++.|++++++.. .+
T Consensus 636 ~~~~~--~~~l~g~~~gyvg~~~~g~L~~~v~~~p----~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n 709 (852)
T TIGR03345 636 QEAHT--VSRLKGSPPGYVGYGEGGVLTEAVRRKP----YSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKN 709 (852)
T ss_pred hhhhh--hccccCCCCCcccccccchHHHHHHhCC----CcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccc
Confidence 11000 00010100 011111112233333333 4699999999999999999999998764 67
Q ss_pred EEEEEEeCCC-----------C------------------CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh-------
Q psy13354 530 IKFILATTEP-----------Q------------------KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK------- 573 (1342)
Q Consensus 530 ~vlIl~t~~~-----------~------------------kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~------- 573 (1342)
+++|+++|-. . .+.+.+.+|+.++.|.+++.+++.+++...+..
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~ 789 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKE 789 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8899987731 0 134688999999999999999999998876654
Q ss_pred c-C--CCcchhHHHHHHHhcCC---cHHHHHHHHHHHH
Q psy13354 574 E-N--IKFETSALNLIATGAQG---SMRDALSLTDQAI 605 (1342)
Q Consensus 574 ~-g--~~i~~~al~~La~~~~g---~lr~a~~~L~kl~ 605 (1342)
. | +.++++++++|++.+.+ ..|.+.+.+++.+
T Consensus 790 ~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 790 NHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred hcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 1 4 46899999999998866 7899888887643
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >KOG0731|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=134.07 Aligned_cols=204 Identities=18% Similarity=0.263 Sum_probs=146.5
Q ss_pred cCCCCccccccchhhHHHHHHHHH---c--------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALD---K--------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~---~--------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
-.+..|.|+.|.+.++++|.+.++ + -++|+.+||+||||||||.+|+++|.+.+-
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------------- 370 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------------- 370 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC--------------
Confidence 445789999999999998888763 2 278899999999999999999999998862
Q ss_pred CCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH-------------
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH------------- 514 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~------------- 514 (1342)
.|+.++++. ..+...+++++..+... .+.+|+|||+|.+...
T Consensus 371 ---------------PF~svSGSEFvE~~~g~~asrvr~lf~~ar~~----aP~iifideida~~~~r~G~~~~~~~~e~ 431 (774)
T KOG0731|consen 371 ---------------PFFSVSGSEFVEMFVGVGASRVRDLFPLARKN----APSIIFIDEIDAVGRKRGGKGTGGGQDER 431 (774)
T ss_pred ---------------ceeeechHHHHHHhcccchHHHHHHHHHhhcc----CCeEEEecccccccccccccccCCCChHH
Confidence 244444432 12234677877776543 2459999999977321
Q ss_pred --HHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q psy13354 515 --AFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587 (1342)
Q Consensus 515 --~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La 587 (1342)
..|.|+--++. ....++++.+||+++-+++++++ |+ ..+....|+..+..+++.-++++.....++..+..++
T Consensus 432 e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a 511 (774)
T KOG0731|consen 432 EQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLA 511 (774)
T ss_pred HHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHH
Confidence 24555555543 33567788889999999999986 44 6788899999999999998888777765666666688
Q ss_pred HhcCCcHH-HHHHHHHHHHhhcC----CCCCHHHHHHHh
Q psy13354 588 TGAQGSMR-DALSLTDQAINYSS----EKITLNSMQEML 621 (1342)
Q Consensus 588 ~~~~g~lr-~a~~~L~kl~~~~~----~~It~e~V~~~v 621 (1342)
..+.|... ++.+++..+...+. ..|+..+++.++
T Consensus 512 ~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~ 550 (774)
T KOG0731|consen 512 SLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAI 550 (774)
T ss_pred hcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHH
Confidence 88877444 45566666554432 337666666555
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-08 Score=123.57 Aligned_cols=304 Identities=13% Similarity=0.064 Sum_probs=158.0
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHcc--CCC
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVL--NPG 113 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~--~pG 113 (1342)
+-.|.+.+++.+.+.. +. +.....+ ..+ . ..++.+.+.+..+.+ +.+++++||++|+..++.... ...
T Consensus 57 h~~~~i~~a~~~~~~~-~~--~~~~~~~-~~~---~-~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r 128 (425)
T PRK08088 57 HLHPKVVAAVEAQLKK-LS--HTCFQVL-AYE---P-YLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKR 128 (425)
T ss_pred CCCHHHHHHHHHHHhh-CC--Ccccccc-CCH---H-HHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCC
Confidence 3477788888888752 22 1111111 111 2 224555777776643 356666699999998887652 223
Q ss_pred CEEEEeeccCCccchhhHHhhh------CCc-----eeEEEEecCCCCCCCC----HHHHHHHHH----hcCCeEEEEcC
Q psy13354 114 DTIMGMSLQEGGHLTHGMMLNM------SGK-----WFNSICYGLNKKEKID----YKKVEYLAK----KNKPKLIIAGA 174 (1342)
Q Consensus 114 D~Vlv~~~~~~~~~s~~~~~~~------~g~-----~~~~v~~~~~~~~~id----~e~Le~~i~----~~~~~liv~~~ 174 (1342)
..|++....+.+.......+.. .+. .+..++++.+.++ .+ ++.+++.+. ....+.+++.+
T Consensus 129 ~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~l~~~l~~~~~~~~~aavi~Ep 207 (425)
T PRK08088 129 SGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG-VSEDDAIASIERIFKNDAAPEDIAAIIIEP 207 (425)
T ss_pred CeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccC-ccHHHHHHHHHHHHHhccCCCceEEEEECc
Confidence 4455544444333222222110 010 0112223322111 12 456777775 23445666643
Q ss_pred CCCC-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC-CeeEEEEec
Q psy13354 175 SAYS-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP-RGGFILMKK 243 (1342)
Q Consensus 175 s~~~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp-~GG~iv~~~ 243 (1342)
..+ ....+++|.++|++||+++|+||+|.. ....+.... ... ..| +.||||.+++. .-||+++++
T Consensus 208 -i~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g-~g~~g~~~~~~~~~~~pd--i~s~sK~l~~G~rig~v~~~~ 283 (425)
T PRK08088 208 -VQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTG-AGRTGTLFAMEQMGVAAD--LTTFAKSIAGGFPLAGVTGRA 283 (425)
T ss_pred -ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC-CCcCcchhHHhhcCCCCC--EEEEeccccCCCcceeeEecH
Confidence 222 333599999999999999999999873 211221111 111 135 56888999421 129999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcEEeeCCCCCeEEEEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIRIVSGGTKSHIILVD 319 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~~~~~~~~~~~v~i~ 319 (1342)
++++.+........+++ ++...+++.++.+.... ++..+++++..+++.+.|.+ .+......+ .+.++|+.
T Consensus 284 ~~~~~~~~~~~~~t~~~--~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g-~G~~~~l~ 358 (425)
T PRK08088 284 EVMDAIAPGGLGGTYAG--NPIACAAALAVLKVFEQ--ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRG-LGAMIAIE 358 (425)
T ss_pred HHHhhcCCCCCCCCCCc--CHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEec-cceEEEEE
Confidence 99988876544444433 33334444444444321 12333444444444444433 332111112 26778988
Q ss_pred ccCCC--------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 320 LRNKK--------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 320 ~~~~~--------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.... ....+...+++ +||.+.+...+ ...+|++++..++
T Consensus 359 l~~~~~~~~p~~~~~~~l~~~~~~-~Gv~~~~~~~~--------~~~iRl~~~~~~t 406 (425)
T PRK08088 359 LFEDGDHSKPNAKLTAQIVARARD-KGLILLSCGPY--------YNVLRILVPLTIE 406 (425)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHh-CCCEEecCCCC--------CCEEEEECCCCcC
Confidence 84321 12345555554 59887642111 2469999886554
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.9e-10 Score=143.36 Aligned_cols=195 Identities=16% Similarity=0.250 Sum_probs=131.1
Q ss_pred cccccchhhHHHHHHHHHcC--------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 391 NTLIGQNHISKSLINALDKK--------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~~--------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
+.++||+++++.+.+++... ++.+++||+||+|+|||++|+.+++.+.+.- ....|.....+..+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~-------~~~d~se~~~~~~~ 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHL-------ERFDMSEYMEKHTV 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCe-------EEEeCchhhhcccH
Confidence 45899999999999998642 2335699999999999999999999986421 00001100000000
Q ss_pred c--cCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC-----------CCc
Q psy13354 463 D--NGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP-----------PKY 529 (1342)
Q Consensus 463 ~--~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p-----------~~~ 529 (1342)
. -+..+ ...+.+....+.+.+...| +.||++||++++..+.++.|++++++. -.+
T Consensus 527 ~~lig~~~--------gyvg~~~~~~l~~~~~~~p----~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~ 594 (731)
T TIGR02639 527 SRLIGAPP--------GYVGFEQGGLLTEAVRKHP----HCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRN 594 (731)
T ss_pred HHHhcCCC--------CCcccchhhHHHHHHHhCC----CeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCC
Confidence 0 00001 1112223334444444444 479999999999999999999999864 135
Q ss_pred EEEEEEeCCCC-------------------------CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHh-------cC-
Q psy13354 530 IKFILATTEPQ-------------------------KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNK-------EN- 575 (1342)
Q Consensus 530 ~vlIl~t~~~~-------------------------kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~-------~g- 575 (1342)
+++|+++|--. .+.+.+.+|+ .++.|.|++.+++.+++...+++ .|
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~ 674 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNI 674 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77888776421 2356788898 79999999999999999887763 22
Q ss_pred -CCcchhHHHHHHHhc---CCcHHHHHHHHHHH
Q psy13354 576 -IKFETSALNLIATGA---QGSMRDALSLTDQA 604 (1342)
Q Consensus 576 -~~i~~~al~~La~~~---~g~lr~a~~~L~kl 604 (1342)
+.++++++++|++.. ....|.+.+.+++.
T Consensus 675 ~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 675 KLELTDDAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred eEEeCHHHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 578999999999863 34566666655543
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=141.86 Aligned_cols=202 Identities=23% Similarity=0.247 Sum_probs=145.6
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchh
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~ 460 (1342)
|.++-+...|+.++|++..++.+.+.+......+ ++|+||||+|||++++.+|+.+..... |
T Consensus 169 l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n-~lL~G~pGvGKTal~~~la~~i~~~~v---------p-------- 230 (821)
T CHL00095 169 LTKEAIDGNLDPVIGREKEIERVIQILGRRTKNN-PILIGEPGVGKTAIAEGLAQRIVNRDV---------P-------- 230 (821)
T ss_pred HHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCC-eEEECCCCCCHHHHHHHHHHHHHhCCC---------C--------
Confidence 4444556678899999999999999998776655 699999999999999999999852110 0
Q ss_pred hhccCCCccEEEEccC------CCcC--HHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------HHHHHHHHhhc
Q psy13354 461 KIDNGCFMDYIEMDAA------STRG--INEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------HAFNAMLKTLE 524 (1342)
Q Consensus 461 ~~~~~~~~d~~~i~~~------~~~~--~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------~~~~~Ll~~Le 524 (1342)
.......+++++.+ ...+ .+.+..+++++.. .+..|++|||+|.+.. +..+.|..++.
T Consensus 231 --~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~ 304 (821)
T CHL00095 231 --DILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE----NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA 304 (821)
T ss_pred --hhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh----cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh
Confidence 00112345666643 1122 2345666666543 2456899999997732 24566777777
Q ss_pred CCCCcEEEEEEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHH----hcCCCcchhHHHHHHHhcCC---
Q psy13354 525 EPPKYIKFILATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILN----KENIKFETSALNLIATGAQG--- 592 (1342)
Q Consensus 525 ~p~~~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~----~~g~~i~~~al~~La~~~~g--- 592 (1342)
. ..+.+|.+|+..+ ...+.+.+|+..+.+..++.++...++..... ..++.++++++..+++.+++
T Consensus 305 r--g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 305 R--GELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred C--CCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 5 4677888887654 34579999999999999999998888765443 35778999999999998875
Q ss_pred ---cHHHHHHHHHHHHhhc
Q psy13354 593 ---SMRDALSLTDQAINYS 608 (1342)
Q Consensus 593 ---~lr~a~~~L~kl~~~~ 608 (1342)
-+++++.+||.+++..
T Consensus 383 ~r~lPdkaidlld~a~a~~ 401 (821)
T CHL00095 383 DRFLPDKAIDLLDEAGSRV 401 (821)
T ss_pred cccCchHHHHHHHHHHHHH
Confidence 3778999999877643
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=140.02 Aligned_cols=201 Identities=17% Similarity=0.276 Sum_probs=132.8
Q ss_pred ccccchhhHHHHHHHHHc-----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCC
Q psy13354 392 TLIGQNHISKSLINALDK-----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGC 466 (1342)
Q Consensus 392 ~lvGq~~~~~~L~~~l~~-----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 466 (1342)
++.|++.+++.+.+.+.. ....+.++|+||||+|||++++.+++.++.
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~--------------------------- 375 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR--------------------------- 375 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------------------
Confidence 489999999998876642 223457899999999999999999998862
Q ss_pred CccEEEEccCCCcCHHHH------------HHHHHHHhhcCccCCceEEEeccCccCCHHH----HHHHHHhhcCC----
Q psy13354 467 FMDYIEMDAASTRGINEM------------AQLLEQTIYAPINARYKIYVIDEVHMLTHHA----FNAMLKTLEEP---- 526 (1342)
Q Consensus 467 ~~d~~~i~~~~~~~~~~i------------~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~----~~~Ll~~Le~p---- 526 (1342)
.+..++.+.......+ ..++....... ....|+++||+|.++.+. .++|+..++..
T Consensus 376 --~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~--~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~ 451 (784)
T PRK10787 376 --KYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVG--VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVA 451 (784)
T ss_pred --CEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcC--CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEE
Confidence 1222221111100000 01111111111 233599999999997653 58999998741
Q ss_pred -----------CCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----------cCCCcchhHHHH
Q psy13354 527 -----------PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----------ENIKFETSALNL 585 (1342)
Q Consensus 527 -----------~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----------~g~~i~~~al~~ 585 (1342)
-++++||+++|.. .++++|++|+.+++|.+++.+++.++++.++.. ..+.++++++..
T Consensus 452 ~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ 530 (784)
T PRK10787 452 FSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIG 530 (784)
T ss_pred EecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHH
Confidence 2567788877776 599999999999999999999999998887742 235799999999
Q ss_pred HHHhc--CCcHHHHHHHHHHHHhhc------CC-----CCCHHHHHHHhccC
Q psy13354 586 IATGA--QGSMRDALSLTDQAINYS------SE-----KITLNSMQEMLSII 624 (1342)
Q Consensus 586 La~~~--~g~lr~a~~~L~kl~~~~------~~-----~It~e~V~~~v~~~ 624 (1342)
+++.. +-..|.+...+++++... ++ .|+.+++.+.++..
T Consensus 531 ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 531 IIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCC
Confidence 99753 234455444444433211 11 26666666666543
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-08 Score=123.90 Aligned_cols=305 Identities=13% Similarity=0.110 Sum_probs=163.2
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh--C--CC-CceEecCCHHHHHHHHHHHcc-
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF--N--AE-AANVQPHSGSQANQAVFFSVL- 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~--g--~~-~~vi~~~sGs~A~~~al~al~- 110 (1342)
.+-.|.+.+++.+.+.... +.....+ .. +....+.+++.+.. + .. .+.++++||++|++.+++...
T Consensus 50 Gh~~p~v~~ai~~ql~~~~---~~~~~~~-~~----~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~ 121 (412)
T TIGR02407 50 GHNNPKLKQALIDYLADDG---IIHSLDM-AT----EAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARK 121 (412)
T ss_pred CCCCHHHHHHHHHHHhhcc---ceecccc-Cc----HHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhh
Confidence 4567889999888875311 1111111 11 23333555677653 2 22 233445699999999998763
Q ss_pred -CCCCEEEEeeccCCccchhhHHhh-----hCCce---eEEEEecCCCCC---CCCHHHHHHHHHhc-----CCeEEEEc
Q psy13354 111 -NPGDTIMGMSLQEGGHLTHGMMLN-----MSGKW---FNSICYGLNKKE---KIDYKKVEYLAKKN-----KPKLIIAG 173 (1342)
Q Consensus 111 -~pGD~Vlv~~~~~~~~~s~~~~~~-----~~g~~---~~~v~~~~~~~~---~id~e~Le~~i~~~-----~~~liv~~ 173 (1342)
....+|+...-.|.++-.....+. ..+.+ ..++.+|..... .-+++.+++.+.++ +.+.|++.
T Consensus 122 ~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~E 201 (412)
T TIGR02407 122 VTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILE 201 (412)
T ss_pred hcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEec
Confidence 233567765544433322211110 00000 112222322100 01466777777632 34556653
Q ss_pred CC-----C-CCcccCHHHHHHHHHHcCCEEEEEcccc-hhhhh---cCCCCCCCCCCcEEEecCCccCCCCCe---eEEE
Q psy13354 174 AS-----A-YSQYIDFERFYHIAKNINSYFMVDMAHY-AGLIA---AGEYPNPVPFADFITSTTHKSLRGPRG---GFIL 240 (1342)
Q Consensus 174 ~s-----~-~~~~~~l~~I~~la~~~gi~LIvDea~~-~g~~~---~~~~~~~l~~~Divv~S~sK~l~gp~G---G~iv 240 (1342)
+- . .+....+++|.++|++||+++|+||++. +|..+ ...+.+. .+|+++ ++|++ ++.| |+++
T Consensus 202 pi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v--~PDi~~--~~K~l-g~~G~pigav~ 276 (412)
T TIGR02407 202 TVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGI--EPDIVC--LSKSI-SGYGLPLALTL 276 (412)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCC--CCCEEE--echhc-cCCccceeEEE
Confidence 31 1 1234479999999999999999999986 32211 1111111 258775 55999 4434 8999
Q ss_pred EechhHHHHhhccCCccccCCcHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHh----CC-cEEeeCCCCCe
Q psy13354 241 MKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-LKPDFKIYQKQVVKNAKILSKILDQ----RG-IRIVSGGTKSH 314 (1342)
Q Consensus 241 ~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-l~~~~~~~~~~l~~~a~~l~~~L~~----~g-~~~~~~~~~~~ 314 (1342)
+++++ +.+.......+++ .++..++++.+..+. +.+ ..+.++..+..+++.+.|+. .+ +.. .....+.
T Consensus 277 ~~~~~-~~~~~~~~~~T~~--gnpl~~aaa~a~l~~~i~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~-~vrg~Gl 350 (412)
T TIGR02407 277 IKPEL-DVWKPGEHNGTFR--GNNLAFVTATAALEYYWSD--DAFEKAVQRKSEIIQERLDRIVAEYPELIK-QVRGRGL 350 (412)
T ss_pred Echhh-hccCCCccCCCCC--ccHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHhhCCCceE-eeeccee
Confidence 98875 4443222233333 244555555555553 432 23456666777777776664 22 222 1223467
Q ss_pred EEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 315 IILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 315 ~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++|+.+++......+...+++ +||.+.+... . ...+|+..+...+.
T Consensus 351 ~~~l~l~~~~~~~~~~~~~~~-~Gv~v~~~~~----~----~~~lr~~p~l~~t~ 396 (412)
T TIGR02407 351 MQGIECGDGDLAGKIAKAAFE-NGLIIETSGP----N----DEVIKLLPPLTIDE 396 (412)
T ss_pred EEEEEecChHHHHHHHHHHHH-CCCEEeccCC----C----CCEEEEECCCCCCH
Confidence 888888754333455555555 5999975311 1 24589887776554
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.7e-09 Score=127.04 Aligned_cols=248 Identities=18% Similarity=0.115 Sum_probs=140.6
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC-CC-CceEecCCHHHHHHHHHHHcc----
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN-AE-AANVQPHSGSQANQAVFFSVL---- 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g-~~-~~vi~~~sGs~A~~~al~al~---- 110 (1342)
.+-.|.+.+|+.+.+. .+..... .+....+ ...++.+++.+.+. .+ ..++|++||++|+..+++...
T Consensus 104 Gh~hp~v~~Av~~ql~-~~~~~~~--~~~~~~~----~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~ 176 (504)
T PLN02760 104 GGSEPRLVAAATEQLN-KLPFYHS--FWNRTTK----PSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNN 176 (504)
T ss_pred CCCCHHHHHHHHHHHh-hccceec--ccccCcH----HHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHH
Confidence 3455779999888875 3321111 0011222 23334457777643 33 345666699999999999763
Q ss_pred --C-CC-CEEEEeeccCCccchhhHHhhhCCc------------eeEEEEecCCCC----C-------CCCHHHHHHHHH
Q psy13354 111 --N-PG-DTIMGMSLQEGGHLTHGMMLNMSGK------------WFNSICYGLNKK----E-------KIDYKKVEYLAK 163 (1342)
Q Consensus 111 --~-pG-D~Vlv~~~~~~~~~s~~~~~~~~g~------------~~~~v~~~~~~~----~-------~id~e~Le~~i~ 163 (1342)
+ ++ ..|+...-.+.+..... +...|. .+..++.|.... + ....+++++.+.
T Consensus 177 ~~g~~~r~~iI~~~~~yHG~t~~a--~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~ 254 (504)
T PLN02760 177 ALGRPNKKKFIARSKSYHGSTLIS--ASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLIL 254 (504)
T ss_pred hcCCCCCcEEEEECCCccCChHhh--hhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 1 33 46776554444332111 111110 012222211000 0 001245666664
Q ss_pred h---cCCeEEEEcCCCCC-------cccCHHHHHHHHHHcCCEEEEEccc-chhhhhcC---CCCCCCCCCcEEEecCCc
Q psy13354 164 K---NKPKLIIAGASAYS-------QYIDFERFYHIAKNINSYFMVDMAH-YAGLIAAG---EYPNPVPFADFITSTTHK 229 (1342)
Q Consensus 164 ~---~~~~liv~~~s~~~-------~~~~l~~I~~la~~~gi~LIvDea~-~~g~~~~~---~~~~~l~~~Divv~S~sK 229 (1342)
. .+.+.|++.+ ..+ ....+++|.++|++||+++|+||++ ++|..+.. .+.+. .+|++++ +|
T Consensus 255 ~~~~~~iAAvI~EP-v~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv--~PDivtl--gK 329 (504)
T PLN02760 255 KEGPETIAAFIAEP-VMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNI--KPDLVSL--AK 329 (504)
T ss_pred hcCCCceEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCC--CCcEEEe--cc
Confidence 2 2345566633 322 2224999999999999999999999 45544331 12222 2687655 59
Q ss_pred cCCCC--CeeEEEEechhHHHHhhc-------cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 230 SLRGP--RGGFILMKKKYKKIINSA-------VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 230 ~l~gp--~GG~iv~~~~l~~~l~~~-------~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
.++|. +-|++++++++++.+... .+.+++++ +|..+|++.+.++.+.+. +..++..++.++|.+.|+
T Consensus 330 ~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~g--nPl~~Aaala~Le~i~~~--~l~~~~~~~g~~l~~~L~ 405 (504)
T PLN02760 330 ALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSG--HPVSCAVALEALKIYKER--NIPEHVNKIAPRFQDGIK 405 (504)
T ss_pred cccCCccccceEeecHHHHhhhhcccccccCcccCCCCCC--CHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHH
Confidence 99653 236688889998887542 22334443 577777777777776432 457788888888888887
Q ss_pred hC
Q psy13354 301 QR 302 (1342)
Q Consensus 301 ~~ 302 (1342)
+.
T Consensus 406 ~l 407 (504)
T PLN02760 406 AF 407 (504)
T ss_pred HH
Confidence 64
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-08 Score=124.02 Aligned_cols=316 Identities=16% Similarity=0.071 Sum_probs=167.1
Q ss_pred Cceeeeec-----CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHH
Q psy13354 28 NNIELIAS-----ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~-----~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A 101 (1342)
..|.+.++ -.+-.|.+.+|+.+.+.. .. +.... +... +...++.+++.+..+.. .-+.|++|||+|
T Consensus 42 ~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~-~~--~~~~~-~~~~----~~~~~la~~L~~~~p~~~~~v~f~~sGsEA 113 (443)
T PRK08360 42 EYIDFLSDAAVQNVGHNNPRVVKAIKEQTDK-LI--HYTPI-YGFP----VEPLLLAEKLIEIAPGDNPKVSFGLSGSDA 113 (443)
T ss_pred EEEEccccHhhcccCCCCHHHHHHHHHHHHh-cc--Ccccc-ccCc----HHHHHHHHHHHHhCCCCCCEEEEcCCHHHH
Confidence 44555444 245677799998888753 21 11111 1112 23334555788777654 456777799999
Q ss_pred HHHHHHHcc--CCCCEEEEeeccCCccchhhHHhhh--------CC--ceeEEEEecCCC--CCC--------CCHHHHH
Q psy13354 102 NQAVFFSVL--NPGDTIMGMSLQEGGHLTHGMMLNM--------SG--KWFNSICYGLNK--KEK--------IDYKKVE 159 (1342)
Q Consensus 102 ~~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~~--------~g--~~~~~v~~~~~~--~~~--------id~e~Le 159 (1342)
++.+++... .....|+.....+.++-.....+.. .+ ..+..++++... .+. -+++.++
T Consensus 114 ve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (443)
T PRK08360 114 NDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIK 193 (443)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHH
Confidence 999998652 2234566544333332111111000 00 112223222110 010 1234556
Q ss_pred HHHHh----cCCeEEEEcCCCCC------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEec
Q psy13354 160 YLAKK----NKPKLIIAGASAYS------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITST 226 (1342)
Q Consensus 160 ~~i~~----~~~~liv~~~s~~~------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S 226 (1342)
+.+.. .+.+.+++.|-..+ ....+++|.++|++||+++|+||+|.. ....+.... ..+ ..|++ +
T Consensus 194 ~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~gr~G~~~a~~~~~~~pDii--t 270 (443)
T PRK08360 194 EKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSG-LGRTGKWFAIEHFGVEPDII--T 270 (443)
T ss_pred HHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC-CCcCccchhhhhcCCCCCEE--E
Confidence 66642 34566777552122 122599999999999999999999873 211222111 111 25776 5
Q ss_pred CCccCCCC-CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--C
Q psy13354 227 THKSLRGP-RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--G 303 (1342)
Q Consensus 227 ~sK~l~gp-~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g 303 (1342)
++|++++. +.|++++++++++.+......+++++ ++..++++.+..+.+.+. +..++..++.+++.+.|++. .
T Consensus 271 lsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~--~p~~~aaa~a~l~~l~~~--~l~~~~~~~g~~l~~~L~~l~~~ 346 (443)
T PRK08360 271 LGKPLGGGLPISATIGRAEIMDSLPPLAHAFTLSG--NPVASAAALAVIEEIEEK--NLLKRAEKLGNYTKKRLEEMKKK 346 (443)
T ss_pred ecccccCCceeEEEEEcHHHHhhhcCCCCCCCCCc--CHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999421 23999999999888865333333332 344455555555554322 35677777788888877653 2
Q ss_pred cEEeeC-CCCCeEEEEEccCCC--------CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 304 IRIVSG-GTKSHIILVDLRNKK--------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 304 ~~~~~~-~~~~~~v~i~~~~~~--------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+++.. ...+.++.+.+.... ....+...++ ++||++.+.. ...+|+..+..++.
T Consensus 347 ~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~----------~~~lr~~P~l~~t~ 410 (443)
T PRK08360 347 HELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAW-ELGLIVTFFS----------GNVLRIQPPLTIEK 410 (443)
T ss_pred CCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHH-HCCeEEeecC----------CCEEEEeCCCCCCH
Confidence 222111 112334445443211 1123444544 4699986421 24589877776654
|
|
| >PRK14700 recombination factor protein RarA; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=121.08 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=121.4
Q ss_pred hhcCCCCcEEEEEEeCCCC--CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhc------CCCcchhHHHHHHHhcCCc
Q psy13354 522 TLEEPPKYIKFILATTEPQ--KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKE------NIKFETSALNLIATGAQGS 593 (1342)
Q Consensus 522 ~Le~p~~~~vlIl~t~~~~--kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~------g~~i~~~al~~La~~~~g~ 593 (1342)
++|+ ..++||.+|++.. .+-++|+|||.++.|.+++.+++...|++.+... .+.+++++++.|++.++||
T Consensus 3 ~vE~--G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GD 80 (300)
T PRK14700 3 YVES--GKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGD 80 (300)
T ss_pred CccC--CcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCH
Confidence 3444 4788999998877 5678999999999999999999999999988752 3689999999999999999
Q ss_pred HHHHHHHHHHHHhhc-C-CC--CCHHHHHHHhccC----------cHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHH
Q psy13354 594 MRDALSLTDQAINYS-S-EK--ITLNSMQEMLSII----------DQKYLIQILDALAEQDGNLILSIANKIEIYNLSYS 659 (1342)
Q Consensus 594 lr~a~~~L~kl~~~~-~-~~--It~e~V~~~v~~~----------~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~ 659 (1342)
.|.++|.||.++... . +. ||.+.|++++... .-+.+..+.+++...|.+.|+-.+..|++.||+|.
T Consensus 81 aR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~ 160 (300)
T PRK14700 81 CRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPL 160 (300)
T ss_pred HHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHH
Confidence 999999999976533 2 22 9999999988533 23477888999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy13354 660 IVLKDLSL 667 (1342)
Q Consensus 660 ~il~~L~~ 667 (1342)
.|.+.|..
T Consensus 161 ~IaRRLii 168 (300)
T PRK14700 161 VIARRMLC 168 (300)
T ss_pred HHHHHHHH
Confidence 88766544
|
|
| >KOG0738|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=120.34 Aligned_cols=194 Identities=17% Similarity=0.168 Sum_probs=126.8
Q ss_pred hhccCCCCccccccchhhHHHHHHHHH---------cC-C-CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCccc
Q psy13354 382 ARKYRPSNFNTLIGQNHISKSLINALD---------KK-R-LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITS 450 (1342)
Q Consensus 382 ~~k~~p~~f~~lvGq~~~~~~L~~~l~---------~~-~-~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~ 450 (1342)
.....-..|+|+.|...+++-|++++- +| + .=.++|++||||||||.+|+++|.+.+.
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t----------- 271 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT----------- 271 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC-----------
Confidence 344455689999999999999999973 22 2 2257999999999999999999998762
Q ss_pred CCCCCCcchhhhccCCCccEEEEccCCCc--CHHHHHHHHHHHhhcCccCCceEEEeccCccCCH------------HHH
Q psy13354 451 QPCGKCSVCVKIDNGCFMDYIEMDAASTR--GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH------------HAF 516 (1342)
Q Consensus 451 ~~c~~~~~~~~~~~~~~~d~~~i~~~~~~--~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~------------~~~ 516 (1342)
-|+.+..+... ...+-..++..+..+..|--+.+|+|||+|.|.. ...
T Consensus 272 ------------------TFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvK 333 (491)
T KOG0738|consen 272 ------------------TFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVK 333 (491)
T ss_pred ------------------eEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHH
Confidence 24555443211 1122233333333333344456999999998832 234
Q ss_pred HHHHHhhcCC-----CCcEEEEEE-eCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh
Q psy13354 517 NAMLKTLEEP-----PKYIKFILA-TTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG 589 (1342)
Q Consensus 517 ~~Ll~~Le~p-----~~~~vlIl~-t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~ 589 (1342)
+.||-.++.- ...+++|++ ||-+..++.++++|+ ..+-.+-|+.+.....++..+..- ..-++-.++.|++.
T Consensus 334 sELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~-~~~~~~~~~~lae~ 412 (491)
T KOG0738|consen 334 SELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSV-ELDDPVNLEDLAER 412 (491)
T ss_pred HHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc-cCCCCccHHHHHHH
Confidence 5666665532 145677776 566779999999999 567677777777777766555433 23456668888888
Q ss_pred cCC-cHHHHHHHHHHHH
Q psy13354 590 AQG-SMRDALSLTDQAI 605 (1342)
Q Consensus 590 ~~g-~lr~a~~~L~kl~ 605 (1342)
++| +-.++.+.|..+.
T Consensus 413 ~eGySGaDI~nvCreAs 429 (491)
T KOG0738|consen 413 SEGYSGADITNVCREAS 429 (491)
T ss_pred hcCCChHHHHHHHHHHH
Confidence 766 3334445554433
|
|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=136.29 Aligned_cols=227 Identities=19% Similarity=0.293 Sum_probs=147.6
Q ss_pred CccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHh-----------ccCCCCCCCCcccCCCCCCc
Q psy13354 389 NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL-----------NCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L-----------~~~~~~~~~~~~~~~c~~~~ 457 (1342)
.|.+++||++++..|.-++..+...+ +||+|++|+|||++|+.+++.+ +|+ -..||..|.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~-vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~--------p~~~~~~~~ 72 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGG-VLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCD--------PDDPEEWCE 72 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCe-EEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCC--------CCCccccCh
Confidence 48899999999999888888777654 9999999999999999999998 342 245899999
Q ss_pred chhhhccCCC---ccEEEEccCCC----cCHHHHHHHHHHHh----hcCc-cCCceEEEeccCccCCHHHHHHHHHhhcC
Q psy13354 458 VCVKIDNGCF---MDYIEMDAAST----RGINEMAQLLEQTI----YAPI-NARYKIYVIDEVHMLTHHAFNAMLKTLEE 525 (1342)
Q Consensus 458 ~~~~~~~~~~---~d~~~i~~~~~----~~~~~i~~ii~~~~----~~p~-~~~~rvviIDE~~~L~~~~~~~Ll~~Le~ 525 (1342)
.|..+....+ ..|+.+..+.. .|..++...+..-. ...+ .+..-+++|||++.|+...++.|++.+++
T Consensus 73 ~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~ 152 (633)
T TIGR02442 73 ECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAM 152 (633)
T ss_pred hhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhc
Confidence 9999876654 24555433211 11112222221100 0011 23455999999999999999999999986
Q ss_pred C-------------CCcEEEEEEeCCC-CCChHHHhccE-EEEEEcCCC-HHHHHHHHHHHHH-----------------
Q psy13354 526 P-------------PKYIKFILATTEP-QKIPITVLSRC-IQFNLKKML-HHDIVNNLCYILN----------------- 572 (1342)
Q Consensus 526 p-------------~~~~vlIl~t~~~-~kl~~~L~sR~-~~i~~~~l~-~~el~~~l~~~~~----------------- 572 (1342)
. +..+.+|.++|-. ..+.++|.+|+ ..+.+..+. .++..+++.+...
T Consensus 153 g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 232 (633)
T TIGR02442 153 GVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQE 232 (633)
T ss_pred CCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHH
Confidence 4 2345555555532 25678999999 556666654 3433333332111
Q ss_pred ------------hcCCCcchhHHHHHHHhc---CC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhccC
Q psy13354 573 ------------KENIKFETSALNLIATGA---QG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSII 624 (1342)
Q Consensus 573 ------------~~g~~i~~~al~~La~~~---~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~~ 624 (1342)
...+.++++++++|++.+ +- ++|..+..+.-+-.++ ...|+.+||++++...
T Consensus 233 ~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lv 304 (633)
T TIGR02442 233 ELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELV 304 (633)
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 124678888888888764 22 4666666554332222 2458888888877443
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-08 Score=121.08 Aligned_cols=282 Identities=11% Similarity=0.008 Sum_probs=157.5
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc-CCC-
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL-NPG- 113 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~-~pG- 113 (1342)
.+-.|.+.+++.+.+.... . +.... +.+.++.+++.+.++.. ..+.|++||++|++.+++... -+|
T Consensus 68 Gh~~p~v~~ai~~q~~~~~--~-----~~~~~----~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr 136 (433)
T PRK00615 68 GHSHPKICDAIQQGAERGT--S-----YGLTS----EQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGR 136 (433)
T ss_pred CCCCHHHHHHHHHHHHhCC--C-----CCCCC----HHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCC
Confidence 4456779999888875321 1 11112 23344556777777643 466677799999999998662 234
Q ss_pred CEEEEeeccCCccchh-hHHhhhCCce--------------eEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCC
Q psy13354 114 DTIMGMSLQEGGHLTH-GMMLNMSGKW--------------FNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASA 176 (1342)
Q Consensus 114 D~Vlv~~~~~~~~~s~-~~~~~~~g~~--------------~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~ 176 (1342)
.+|+...-.|.++... .......+.. ...+.++.+ |++++++.+... ..+.|++. |.
T Consensus 137 ~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~~aavI~E-pv 210 (433)
T PRK00615 137 SIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYN-----DFQIFQTVMNSLGHRVAGVIFE-PI 210 (433)
T ss_pred CEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCC-----CHHHHHHHHHhcCCceEEEEEC-CC
Confidence 4666544433332100 0011111000 001111222 788888888643 34556653 33
Q ss_pred CC-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhc----CCCCCCCCCCcEEEecCCccCCC-CCeeEEEEech
Q psy13354 177 YS-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAA----GEYPNPVPFADFITSTTHKSLRG-PRGGFILMKKK 244 (1342)
Q Consensus 177 ~~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~----~~~~~~l~~~Divv~S~sK~l~g-p~GG~iv~~~~ 244 (1342)
.+ ....+++|.++|++||+++|+||+|. |+-.+ ..+.+. .+|+++ ++|.++| .++|+++++++
T Consensus 211 ~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R~G~~ga~~~~gv--~PDi~~--~gK~lggG~p~~av~~~~~ 285 (433)
T PRK00615 211 CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFRVAQGGAAAIYHV--KPDITV--YGKILGGGLPAAAVVAHKS 285 (433)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccccHhHHHHhcCC--CCCeEE--EcccccCCcceeeeeecHH
Confidence 33 22247899999999999999999994 43111 111111 258875 5799953 34699999999
Q ss_pred hHHHHhhccCCcc-ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcEEeeCCCCCeEEEEE
Q psy13354 245 YKKIINSAVFPGI-QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIRIVSGGTKSHIILVD 319 (1342)
Q Consensus 245 l~~~l~~~~~~~~-~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~~~~~~~~~~~v~i~ 319 (1342)
+++.+......+. .+...+|..++++.+.++.+.+ +...+++.++.+++.+.|++ .|+++.... .+.++.+.
T Consensus 286 i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r-~G~~~~i~ 362 (433)
T PRK00615 286 IMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCRE--QGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVR-YGSMFSFF 362 (433)
T ss_pred HHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-eceEEEEE
Confidence 9988864222111 1223466777777777777642 23467777777777666554 455432212 23334444
Q ss_pred ccCCC-------------CCHHHHHHHHHHCCceeeec
Q psy13354 320 LRNKK-------------ITGKIAESILESANIICNKN 344 (1342)
Q Consensus 320 ~~~~~-------------~~~~~~~~ll~~~GI~v~~~ 344 (1342)
+.... ....+...+++ +||++.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~ 399 (433)
T PRK00615 363 FNENRPNNLAEAQLSDIEAFQTFYQSAFS-KGVYLSPS 399 (433)
T ss_pred EeCCCCCChHHHhhCCHHHHHHHHHHHHH-CCeeecCc
Confidence 43211 01234555555 59998754
|
|
| >KOG0739|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.8e-10 Score=120.80 Aligned_cols=181 Identities=15% Similarity=0.190 Sum_probs=121.9
Q ss_pred CCCccccccchhhHHHHHHHHH---------cC-C-CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALD---------KK-R-LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~---------~~-~-~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
-..|+|+.|.+.+++.|++++- .| + .-.++||||||||||+.+|+++|.+.+.
T Consensus 129 NVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS---------------- 192 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS---------------- 192 (439)
T ss_pred CCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC----------------
Confidence 3469999999999999999862 22 2 2368999999999999999999998873
Q ss_pred CcchhhhccCCCccEEEEccCCC--cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH-------H----HHHHHHh
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAAST--RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH-------A----FNAMLKT 522 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~--~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~-------~----~~~Ll~~ 522 (1342)
-|+.+..++. .+..+-..++..+..+.....+.||+|||+|.+... + ...||=.
T Consensus 193 -------------TFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQ 259 (439)
T KOG0739|consen 193 -------------TFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQ 259 (439)
T ss_pred -------------ceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHh
Confidence 2444433321 112234455555555556677889999999988321 1 1222222
Q ss_pred h---cCCCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHH
Q psy13354 523 L---EEPPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRD 596 (1342)
Q Consensus 523 L---e~p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~ 596 (1342)
+ -+..+.++++.+||-+..++.+|++|+ ..+.++-|.........+-.+-.-...+++.....|++.++|.-..
T Consensus 260 MqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 260 MQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred hhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcC
Confidence 2 234456666667788888999999999 5555555555444444443444445568899999999998875443
|
|
| >KOG0743|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=125.05 Aligned_cols=199 Identities=18% Similarity=0.289 Sum_probs=131.7
Q ss_pred CCCccccccchhhHHHHHHHH----HcC--------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINAL----DKK--------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l----~~~--------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
|.+|+.++-....++.+.+.+ +++ -....||||||||||||+++-++|+.|+.
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y--------------- 261 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY--------------- 261 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC---------------
Confidence 456666666555554444443 332 12367999999999999999999999973
Q ss_pred CCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCcc-CC--HH---------------HH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHM-LT--HH---------------AF 516 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~-L~--~~---------------~~ 516 (1342)
|+..++.++...-++++.++... ..+.||+|+++|. +. .. ..
T Consensus 262 --------------dIydLeLt~v~~n~dLr~LL~~t------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTl 321 (457)
T KOG0743|consen 262 --------------DIYDLELTEVKLDSDLRHLLLAT------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTL 321 (457)
T ss_pred --------------ceEEeeeccccCcHHHHHHHHhC------CCCcEEEEeecccccccccccccccccccCCcceeeh
Confidence 56666666555556788888775 3456999999983 31 11 13
Q ss_pred HHHHHhhcCC----CCcEEEEEEeCCCCCChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh
Q psy13354 517 NAMLKTLEEP----PKYIKFILATTEPQKIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG 589 (1342)
Q Consensus 517 ~~Ll~~Le~p----~~~~vlIl~t~~~~kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~ 589 (1342)
.-||+.++.. ...-++||+||..+|++|+|.+++ ..+.+...+.+......++.+.-.. +..
T Consensus 322 SGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~-------- 390 (457)
T KOG0743|consen 322 SGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHR-------- 390 (457)
T ss_pred HHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---Ccc--------
Confidence 4588888853 235689999999999999999955 6788888888888777666554322 111
Q ss_pred cCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccC---cHHHHHHHHHHHHccC
Q psy13354 590 AQGSMRDALSLTDQAINYSSEKITLNSMQEMLSII---DQKYLIQILDALAEQD 640 (1342)
Q Consensus 590 ~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~---~~~~if~l~dal~~~~ 640 (1342)
+..+++++ ..+..+|..+|.+.+-.. ....+-.|++++.+.+
T Consensus 391 -------L~~eie~l--~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~ 435 (457)
T KOG0743|consen 391 -------LFDEIERL--IEETEVTPAQVAEELMKNKNDADVALKGLVEALESKK 435 (457)
T ss_pred -------hhHHHHHH--hhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence 22233331 123457888887766433 3345666777665544
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.7e-09 Score=113.69 Aligned_cols=190 Identities=17% Similarity=0.267 Sum_probs=138.9
Q ss_pred hccCCCCccccccchhhHHHHHHHH---HcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINAL---DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l---~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
....|..+++|+|-+..++.|.+.. -.|..++.+|++|++|||||++++++..+...++
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G------------------ 80 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG------------------ 80 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC------------------
Confidence 3466788999999888887776654 4678888999999999999999999999987432
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-HHHHHHHHHhhc----CCCCcEEEEE
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-HHAFNAMLKTLE----EPPKYIKFIL 534 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-~~~~~~Ll~~Le----~p~~~~vlIl 534 (1342)
..++++.... ..++.++++.+...| .+-||++|+..+=. ......|...|| ..|+++++..
T Consensus 81 --------LRlIev~k~~---L~~l~~l~~~l~~~~---~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyA 146 (249)
T PF05673_consen 81 --------LRLIEVSKED---LGDLPELLDLLRDRP---YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYA 146 (249)
T ss_pred --------ceEEEECHHH---hccHHHHHHHHhcCC---CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEE
Confidence 3466665432 235666666666554 24589999977443 334455555554 5677887777
Q ss_pred EeCCCCCCh---------------H--------HHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcch-----hHHHH
Q psy13354 535 ATTEPQKIP---------------I--------TVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFET-----SALNL 585 (1342)
Q Consensus 535 ~t~~~~kl~---------------~--------~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~-----~al~~ 585 (1342)
++|+++-+. + +|.+|+ ..+.|.+++.++..+++..++++.|+.+++ +|++.
T Consensus 147 TSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~w 226 (249)
T PF05673_consen 147 TSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQW 226 (249)
T ss_pred ecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 777543111 1 667787 899999999999999999999999999984 55555
Q ss_pred HHHhcCCcHHHHHHHHHHH
Q psy13354 586 IATGAQGSMRDALSLTDQA 604 (1342)
Q Consensus 586 La~~~~g~lr~a~~~L~kl 604 (1342)
-....+.+-|.|.+-++.+
T Consensus 227 a~~rg~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 227 ALRRGGRSGRTARQFIDDL 245 (249)
T ss_pred HHHcCCCCHHHHHHHHHHH
Confidence 5566677999988876543
|
|
| >KOG0727|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=112.73 Aligned_cols=203 Identities=15% Similarity=0.205 Sum_probs=133.3
Q ss_pred CCC-CccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC
Q psy13354 386 RPS-NFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452 (1342)
Q Consensus 386 ~p~-~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~ 452 (1342)
+|. ++.|+-|.+..++++++++.- -..|.++|+|||||||||.+++++|++-..
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a------------- 215 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA------------- 215 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch-------------
Confidence 443 678888888888888888742 156778999999999999999999987642
Q ss_pred CCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH-----------HH
Q psy13354 453 CGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-----------HA 515 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-----------~~ 515 (1342)
.|+.+.++. ..|..-+++++.-+.. ..+.+|+|||+|.+.+ +.
T Consensus 216 ----------------~firvvgsefvqkylgegprmvrdvfrlake----napsiifideidaiatkrfdaqtgadrev 275 (408)
T KOG0727|consen 216 ----------------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----NAPSIIFIDEIDAIATKRFDAQTGADREV 275 (408)
T ss_pred ----------------heeeeccHHHHHHHhccCcHHHHHHHHHHhc----cCCcEEEeehhhhHhhhhccccccccHHH
Confidence 355555542 2344566666655543 3346999999997732 34
Q ss_pred HHHHHHhhcC-----CCCcEEEEEEeCCCCCChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q psy13354 516 FNAMLKTLEE-----PPKYIKFILATTEPQKIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587 (1342)
Q Consensus 516 ~~~Ll~~Le~-----p~~~~vlIl~t~~~~kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La 587 (1342)
+..|+..|.. +..++.+|++||+.+.+.+++++-+ ..++|+-++..+.+-...-+..+.++.-+-+.-.+++
T Consensus 276 qril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~ 355 (408)
T KOG0727|consen 276 QRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVA 355 (408)
T ss_pred HHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhc
Confidence 5556555543 4568899999999999999998655 6799998888887777766666666542223233344
Q ss_pred HhcCCcHHHHHHHHHHHHhhcC--C--CCCHHHHHHHh
Q psy13354 588 TGAQGSMRDALSLTDQAINYSS--E--KITLNSMQEML 621 (1342)
Q Consensus 588 ~~~~g~lr~a~~~L~kl~~~~~--~--~It~e~V~~~v 621 (1342)
+--.-+-.++...++.+-..+- . -|...|.++..
T Consensus 356 rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay 393 (408)
T KOG0727|consen 356 RPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAY 393 (408)
T ss_pred CccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHH
Confidence 3222233344444444433331 1 15566665544
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-08 Score=121.41 Aligned_cols=305 Identities=13% Similarity=0.069 Sum_probs=161.9
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--CCceEecCCHHHHHHHHHHHcc--CC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--EAANVQPHSGSQANQAVFFSVL--NP 112 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~~~vi~~~sGs~A~~~al~al~--~p 112 (1342)
.+-.|.+.+++.+.+.. .. +.... ....+ ...++.+++.+.... ...++|++|||+|++.+++... ..
T Consensus 55 Gh~~p~v~~ai~~ql~~-~~--~~~~~-~~~~~----~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tg 126 (421)
T PRK06777 55 GHRHPKVVAAVRQQLDQ-FT--HTAYQ-IVPYA----SYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTG 126 (421)
T ss_pred CCCCHHHHHHHHHHHhh-cc--ccccc-ccCCh----HHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhC
Confidence 45677799998888753 21 11111 11122 223345577777653 1345556699999999998652 22
Q ss_pred CCEEEEeeccCCccchhhHHhhh----C--C-----ceeEEEEecCCCCC---CCCHHHHHHHHHh----cCCeEEEEcC
Q psy13354 113 GDTIMGMSLQEGGHLTHGMMLNM----S--G-----KWFNSICYGLNKKE---KIDYKKVEYLAKK----NKPKLIIAGA 174 (1342)
Q Consensus 113 GD~Vlv~~~~~~~~~s~~~~~~~----~--g-----~~~~~v~~~~~~~~---~id~e~Le~~i~~----~~~~liv~~~ 174 (1342)
..+|+.....|.++......+.. . + ..+..++++....+ .-+++.+++.+.. ...+.+++.+
T Consensus 127 r~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Ep 206 (421)
T PRK06777 127 RPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEP 206 (421)
T ss_pred CCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 34576655444443222211100 0 0 00111222211111 1135667777752 2345566643
Q ss_pred CCCC-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC-CeeEEEEec
Q psy13354 175 SAYS-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP-RGGFILMKK 243 (1342)
Q Consensus 175 s~~~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp-~GG~iv~~~ 243 (1342)
... ....+++|.++|++||+++|+||+|. |....+.... ..+ .+|++ +++|.+++. +.|++++++
T Consensus 207 -v~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~gr~g~~~~~~~~~~~pDiv--~~sK~l~~G~pigav~~~~ 282 (421)
T PRK06777 207 -IQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT-GFARTGKLFAMEYYDVKPDLI--TMAKSLGGGMPISAVVGRA 282 (421)
T ss_pred -ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCccCCchhhhhhcCCCCCEE--eeehhhcCCCceEEEEEcH
Confidence 221 33359999999999999999999987 3222222211 111 25766 578999421 229999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEEEEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSHIILVD 319 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v~i~ 319 (1342)
++++.+.......++++ ++..++++.+.++.+.+ ++..++..++.+++.+.|++. ++.....+.+..+ .+.
T Consensus 283 ~i~~~~~~~~~~~T~~~--~p~~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~-~i~ 357 (421)
T PRK06777 283 EVMDAPAPGGLGGTYAG--NPLAVAAALAVLDVIAE--EKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMV-AVE 357 (421)
T ss_pred HHHhccCCCCCCCCCCc--CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEE-EEE
Confidence 98888765433333332 44445555555555432 356778888888888888774 2211112333333 333
Q ss_pred ccCC--C-CCHHHHHHH---HHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 320 LRNK--K-ITGKIAESI---LESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 320 ~~~~--~-~~~~~~~~l---l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+... . .+.++...+ +.++||++.+...+ .+.+|+...-.
T Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~--------g~~lr~~ppl~ 402 (421)
T PRK06777 358 FNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVH--------GNVIRFLYPLT 402 (421)
T ss_pred EecCccCCccHHHHHHHHHHHHhCCeEEeecCCC--------CCEEEEeCCCC
Confidence 3221 1 122333333 33469999764221 13689876543
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-09 Score=132.59 Aligned_cols=203 Identities=20% Similarity=0.250 Sum_probs=145.5
Q ss_pred CCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 388 SNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 388 ~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
.+|.++.|.+.+++.+.+++.. -+.+..+|||||||||||.+|+++++.++.
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~---------------- 302 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS---------------- 302 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC----------------
Confidence 3577777777777777666631 144558999999999999999999997762
Q ss_pred CcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------HHHHHH
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------HHAFNA 518 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~~~~~~ 518 (1342)
.|+.++.++.. ....+++++..+.. ..+.||++||+|.+. ....+.
T Consensus 303 -------------~fi~v~~~~l~sk~vGesek~ir~~F~~A~~----~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~ 365 (494)
T COG0464 303 -------------RFISVKGSELLSKWVGESEKNIRELFEKARK----LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQ 365 (494)
T ss_pred -------------eEEEeeCHHHhccccchHHHHHHHHHHHHHc----CCCcEEEEEchhhhhccCCCCCchHHHHHHHH
Confidence 35555554211 23457777777663 344599999999872 246778
Q ss_pred HHHhhc--CCCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCC-cchhHHHHHHHhcCC
Q psy13354 519 MLKTLE--EPPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIK-FETSALNLIATGAQG 592 (1342)
Q Consensus 519 Ll~~Le--~p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~-i~~~al~~La~~~~g 592 (1342)
|+..++ +...++++|.+||.++.++++++. |+ ..+.+++|+.++..++++..++..+.. .++-.++.+++.+.|
T Consensus 366 lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 366 LLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 888885 445677788889999999999998 88 789999999999999999999876664 445667888886654
Q ss_pred -cHHHHHHHHHHHHhhc-----CCCCCHHHHHHHhcc
Q psy13354 593 -SMRDALSLTDQAINYS-----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 593 -~lr~a~~~L~kl~~~~-----~~~It~e~V~~~v~~ 623 (1342)
+-.++..++..+...+ ...||.+|..+++..
T Consensus 446 ~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 446 YSGADIAALVREAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHh
Confidence 5555556665554443 224777776666644
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-08 Score=122.62 Aligned_cols=291 Identities=13% Similarity=0.035 Sum_probs=159.9
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHccC----
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLN---- 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~~---- 111 (1342)
..-.|.+.+|+.+.+. ....... ..+ .. +....+.+++.+..+.. +.+.+++|||+|++.+++....
T Consensus 58 Gh~~p~i~~Ai~~q~~-~~~~~~~--~~~-~~----~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~ 129 (428)
T PRK07986 58 GYNHPQLNAAMKSQID-AMSHVMF--GGI-TH----PPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQA 129 (428)
T ss_pred CCCCHHHHHHHHHHHh-hcCCccc--ccc-CC----HHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 3456779999888875 2211110 011 11 23344556777777543 4667777999999999986531
Q ss_pred ---CCCEEEEeeccCCccchhhHHhhh---------CC--ceeEEEEecCCC---CC-CCCHHHHHHHHHhc--CCeEEE
Q psy13354 112 ---PGDTIMGMSLQEGGHLTHGMMLNM---------SG--KWFNSICYGLNK---KE-KIDYKKVEYLAKKN--KPKLII 171 (1342)
Q Consensus 112 ---pGD~Vlv~~~~~~~~~s~~~~~~~---------~g--~~~~~v~~~~~~---~~-~id~e~Le~~i~~~--~~~liv 171 (1342)
...+|+.....|.+.......+.. .+ ..+..++.+... ++ .-|++++++.+... ....|+
T Consensus 130 ~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi 209 (428)
T PRK07986 130 KGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVI 209 (428)
T ss_pred cCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 235777755444332111111100 00 011122222110 01 11566777777532 334455
Q ss_pred EcC--CCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC--CeeEE
Q psy13354 172 AGA--SAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP--RGGFI 239 (1342)
Q Consensus 172 ~~~--s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp--~GG~i 239 (1342)
+.+ ...+ ....+++|.++|++||+++|+||+| .|+...+... .... .+|+++ ++|.++|. +.|++
T Consensus 210 ~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~-tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~gG~~p~~av 286 (428)
T PRK07986 210 LEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA-TGFGRTGKLFACEHAGIAPDILC--LGKALTGGTMTLSAT 286 (428)
T ss_pred EechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCccCCCeeeecccCCCCCEEE--echhhhCCcccCcch
Confidence 533 1112 2346999999999999999999998 4432122211 1111 258885 67999543 23677
Q ss_pred EEechhHHHHhhcc-----CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-CCC
Q psy13354 240 LMKKKYKKIINSAV-----FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSG-GTK 312 (1342)
Q Consensus 240 v~~~~l~~~l~~~~-----~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-~~~ 312 (1342)
++++++++.+.... +.++++ .+|..+|++.+.++.+.+. +..++..++.+++.+.|++. ..+.+.. ...
T Consensus 287 ~~~~~i~~~~~~~~~~~~~~~~T~~--g~p~~~aaa~a~L~~i~~~--~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~ 362 (428)
T PRK07986 287 LTTREVAETISNGEAGCFMHGPTFM--GNPLACAVANASLSLLESG--DWQQQVAAIEAQLREELAPLRDAPMVADVRVL 362 (428)
T ss_pred hchHHHHHHhhcCCCCccccCCCCC--cCHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHhcCCCEEeEecc
Confidence 88889988886521 223333 3567777777766665422 34677888888888888764 2221110 122
Q ss_pred CeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 313 SHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 313 ~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
+.+..+.+..+.....+...++ ++||++.+
T Consensus 363 Gl~~~ve~~~~~~~~~~~~~l~-~~Gl~~~~ 392 (428)
T PRK07986 363 GAIGVVETTRPVNMAALQRFFV-EQGVWIRP 392 (428)
T ss_pred ceEEEEEeCCcccHHHHHHHHH-HCCcEEEe
Confidence 4556666654432334555555 56999875
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.4e-08 Score=119.77 Aligned_cols=244 Identities=14% Similarity=0.046 Sum_probs=140.0
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--CCCC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL--NPGD 114 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~--~pGD 114 (1342)
.+-.|.+.+++.+.+.... . +.... +.+.++.+++.+.+..-+-+.|++|||+|++.+++... ...+
T Consensus 114 Gh~~p~v~~av~~ql~~~~--~-----~~~~~----~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tgr~ 182 (474)
T PLN02482 114 GHADDEVLAALAETMKKGT--S-----FGAPC----LLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTGRE 182 (474)
T ss_pred CCCCHHHHHHHHHHHhhCC--C-----CCCCC----HHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcCCC
Confidence 3445779999888885321 1 11111 34445666787776533456667799999999998662 2235
Q ss_pred EEEEeeccCCccchh-hHH----------hhhCCce----eEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCC
Q psy13354 115 TIMGMSLQEGGHLTH-GMM----------LNMSGKW----FNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAY 177 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~-~~~----------~~~~g~~----~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~ 177 (1342)
+|+...-.|.++... ... ....|.. ..++.++++ |++.+++.+..+ ..+.|++.+ ..
T Consensus 183 ~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n-----d~~~l~~~l~~~~~~iAavI~Ep-v~ 256 (474)
T PLN02482 183 KIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYN-----DLEAVKKLFEANKGEIAAVILEP-VV 256 (474)
T ss_pred EEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCC-----ChHHHHHHHHhCCCceEEEEECC-CC
Confidence 676654444332211 100 0000110 012223333 788899888643 345566533 22
Q ss_pred C-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC-CCCCC-CCcEEEecCCccCCCC-CeeEEEEechhHH
Q psy13354 178 S-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY-PNPVP-FADFITSTTHKSLRGP-RGGFILMKKKYKK 247 (1342)
Q Consensus 178 ~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~-~~~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~ 247 (1342)
+ ....+++|.++|++||+++|+||++. |+..+... ...+. .+|++ +++|+++|. +-|.+++++++++
T Consensus 257 g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR~g~~ga~~~~gv~PDi~--t~gK~lggG~Pigav~g~~ei~~ 333 (474)
T PLN02482 257 GNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFRIAYGGAQEYFGITPDLT--TLGKVIGGGLPVGAYGGRREIME 333 (474)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CeecCcchHhHHhCCCCCEE--EecchhhCCCceEEEEEcHHHHH
Confidence 2 23358899999999999999999984 44221100 00111 25876 456999542 2266789999998
Q ss_pred HHhhccCCcc-ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 248 IINSAVFPGI-QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 248 ~l~~~~~~~~-~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
.+......+. .+...+|..++++.+.++.+.+ .+..+++.++.+++++.|.+.
T Consensus 334 ~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~--~~~~~~~~~~g~~l~~~L~~l 387 (474)
T PLN02482 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ--PGTYEYLDKITKKLIQGILEA 387 (474)
T ss_pred hhccCCCcccccCcchhHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHH
Confidence 8864211111 1112355666667777776642 245677888888888888764
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.1e-09 Score=134.78 Aligned_cols=203 Identities=18% Similarity=0.255 Sum_probs=142.5
Q ss_pred cCCCCccccccchhhHHHHHHHHH-----------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALD-----------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~-----------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
.....|+++.|.+.+++.+.+.+. .+..+..++|+||+|+|||++++.+++.++.
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~-------------- 211 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------------- 211 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--------------
Confidence 445679999998888877766553 2355677999999999999999999998863
Q ss_pred CCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-------------- 513 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-------------- 513 (1342)
.++.++++. ..+...++++++.+... .+.||+|||+|.+..
T Consensus 212 ---------------~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~----~P~IifIDEiD~l~~~r~~~~~g~~~~~~ 272 (644)
T PRK10733 212 ---------------PFFTISGSDFVEMFVGVGASRVRDMFEQAKKA----APCIIFIDEIDAVGRQRGAGLGGGHDERE 272 (644)
T ss_pred ---------------CEEEEehHHhHHhhhcccHHHHHHHHHHHHhc----CCcEEEehhHhhhhhccCCCCCCCchHHH
Confidence 233333321 12334567777666433 346999999998732
Q ss_pred HHHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 514 HAFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 514 ~~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
...+.|+..++.. ...+++|.+||.++.+++++.+ |+ ..+.++.|+.++..++++.++++..+.- +..+..+++
T Consensus 273 ~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~d~~~la~ 351 (644)
T PRK10733 273 QTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DIDAAIIAR 351 (644)
T ss_pred HHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cCCHHHHHh
Confidence 1345666666542 3568888999999999999985 77 7899999999999999998887755422 223566888
Q ss_pred hcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 589 GAQG-SMRDALSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
.+.| +..++.+++..+...+ ...|+.+++++++
T Consensus 352 ~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 352 GTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 7765 5555666665555433 2348888887765
|
|
| >KOG0728|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-09 Score=113.51 Aligned_cols=214 Identities=19% Similarity=0.262 Sum_probs=143.1
Q ss_pred HHHHHHhhccCCCCccccccchhhHHHHHHHHHcC------------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCC
Q psy13354 376 IIKVVLARKYRPSNFNTLIGQNHISKSLINALDKK------------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443 (1342)
Q Consensus 376 ~~~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~------------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~ 443 (1342)
+..+.+..|-...+++-+-|.+..++++++.|.-. --|..+|+|||||+|||.+|++++..-.|
T Consensus 132 LVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c---- 207 (404)
T KOG0728|consen 132 LVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---- 207 (404)
T ss_pred hhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce----
Confidence 34455667666666666666788888888887422 22457999999999999999999998765
Q ss_pred CCCCcccCCCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH----
Q psy13354 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH---- 513 (1342)
Q Consensus 444 ~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~---- 513 (1342)
-|+.+.++. ..+..-+++++-.+. ...+.+++.||+|.+..
T Consensus 208 -------------------------~firvsgselvqk~igegsrmvrelfvmar----ehapsiifmdeidsigs~r~e 258 (404)
T KOG0728|consen 208 -------------------------TFIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRVE 258 (404)
T ss_pred -------------------------EEEEechHHHHHHHhhhhHHHHHHHHHHHH----hcCCceEeeeccccccccccc
Confidence 255554431 122234555544433 33456999999998832
Q ss_pred -------HHHHHHHHh---hcC--CCCcEEEEEEeCCCCCChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCc
Q psy13354 514 -------HAFNAMLKT---LEE--PPKYIKFILATTEPQKIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKF 578 (1342)
Q Consensus 514 -------~~~~~Ll~~---Le~--p~~~~vlIl~t~~~~kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i 578 (1342)
+.+...+.. |+. ...++.+|++||+.+-+++++++-+ ..++|++|+++...++|+-+.++.++.=
T Consensus 259 ~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~r 338 (404)
T KOG0728|consen 259 SGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTR 338 (404)
T ss_pred CCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhc
Confidence 234444444 432 3568899999999999999998655 6799999999999999987776644321
Q ss_pred chhHHHHHHHhcCC-cHHHHHHHHHHHHhhcC--C--CCCHHHHHHHhcc
Q psy13354 579 ETSALNLIATGAQG-SMRDALSLTDQAINYSS--E--KITLNSMQEMLSI 623 (1342)
Q Consensus 579 ~~~al~~La~~~~g-~lr~a~~~L~kl~~~~~--~--~It~e~V~~~v~~ 623 (1342)
--.+..+|+...| +-......+..+-.|+- . .+|.+|.+-+++.
T Consensus 339 -gi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~k 387 (404)
T KOG0728|consen 339 -GINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 387 (404)
T ss_pred -ccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHH
Confidence 1125566665433 44455556666666663 2 2888887776643
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.4e-08 Score=122.14 Aligned_cols=312 Identities=13% Similarity=0.065 Sum_probs=166.7
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC-----
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN----- 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~----- 111 (1342)
..-.|.+.+|+.+.+.. .. +... .+ .. +...++.+++.+.++....+.|++||++|++.+++....
T Consensus 62 Gh~~p~v~~ai~~q~~~-~~--~~~~-~~-~~----~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~ 132 (451)
T PRK07678 62 GYGRKELAEAAYEQLKT-LS--YFPL-TQ-SH----EPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQK 132 (451)
T ss_pred CCCCHHHHHHHHHHHHh-cC--cccc-cc-CC----HHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence 44567788998888752 21 1111 11 12 223345567888776555677777999999999986521
Q ss_pred --CC-CEEEEeeccCCccchhhHHhh----------hCCceeEEEEecCCCCCC-------CC---HHHHHHHHH---hc
Q psy13354 112 --PG-DTIMGMSLQEGGHLTHGMMLN----------MSGKWFNSICYGLNKKEK-------ID---YKKVEYLAK---KN 165 (1342)
Q Consensus 112 --pG-D~Vlv~~~~~~~~~s~~~~~~----------~~g~~~~~v~~~~~~~~~-------id---~e~Le~~i~---~~ 165 (1342)
+| .+|+...-.|.++........ ....++..++.+...... -+ ++.+++.+. ..
T Consensus 133 g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (451)
T PRK07678 133 GEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSE 212 (451)
T ss_pred CCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCC
Confidence 23 467765544433322111110 000111222221110000 01 233555564 23
Q ss_pred CCeEEEEcC--CC----CCcccCHHHHHHHHHHcCCEEEEEcccc-hhhhh---cCCCCCCCCCCcEEEecCCccCCCC-
Q psy13354 166 KPKLIIAGA--SA----YSQYIDFERFYHIAKNINSYFMVDMAHY-AGLIA---AGEYPNPVPFADFITSTTHKSLRGP- 234 (1342)
Q Consensus 166 ~~~liv~~~--s~----~~~~~~l~~I~~la~~~gi~LIvDea~~-~g~~~---~~~~~~~l~~~Divv~S~sK~l~gp- 234 (1342)
+.+.|++.| +. .+....++++.++|++||+++|+||++. +|..+ ...+.+. .+|+++. +|.++|.
T Consensus 213 ~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv--~PDivt~--gK~lggG~ 288 (451)
T PRK07678 213 TIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGV--KPDIITM--AKGITSAY 288 (451)
T ss_pred ceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCC--CCCEEEe--ecccccCC
Confidence 456666644 11 1233369999999999999999999983 44322 1111221 2698866 5999553
Q ss_pred -CeeEEEEechhHHHHhhcc----CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcE
Q psy13354 235 -RGGFILMKKKYKKIINSAV----FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIR 305 (1342)
Q Consensus 235 -~GG~iv~~~~l~~~l~~~~----~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~ 305 (1342)
+-|++++++++++.+.... ..+..+...+|..+|++.+.++.+.+. .+.++..+..++|.+.|.+ .++.
T Consensus 289 ~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~--~~~~~~~~~g~~l~~~l~~~~~~~~~v 366 (451)
T PRK07678 289 LPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENE--NLIERSAQLGELLLEQLKEELGEHPLV 366 (451)
T ss_pred cceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 2388889999988876421 112222233667777777777776422 3566777777788777754 2322
Q ss_pred EeeCCCCCeEEEEEccCC------CC---CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 306 IVSGGTKSHIILVDLRNK------KI---TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 306 ~~~~~~~~~~v~i~~~~~------~~---~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.... ..+.++.+.+... .+ ...+...+++ +||++.+. .|.++.. ...+|++.+..+|.
T Consensus 367 ~~vr-g~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~-~Gv~~~~~-g~~v~~~---~~~lrl~Ppl~it~ 433 (451)
T PRK07678 367 GDIR-GKGLLVGIELVNDKETKEPADNDKVASVVAACKE-KGLIIGKN-GDTVAGY---NNVLTLSPPLVISS 433 (451)
T ss_pred EEEE-eeceEEEEEEecCCcccCcCchHHHHHHHHHHHH-CCcEEeec-CccccCC---CCEEEEECCCcCCH
Confidence 1111 1233444554211 11 1234444444 59999753 2222221 24589887776553
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-08 Score=119.07 Aligned_cols=315 Identities=14% Similarity=0.082 Sum_probs=161.8
Q ss_pred Cceeeeec-----CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHH
Q psy13354 28 NNIELIAS-----ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQ 100 (1342)
Q Consensus 28 ~~i~l~a~-----~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~ 100 (1342)
..|.+.++ -.+-.|.+.+|+.+.+.. .. +.... .... +...++.+++.+..... +.++|++||++
T Consensus 34 ~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~-~~--~~~~~-~~~~----~~~~~la~~l~~~~p~~~~~~v~f~~sGse 105 (420)
T TIGR00700 34 RLIDFASGIAVLNIGHSHPRVVDAVRTQVAE-FT--HTCFM-VTPY----EGYVALAEKLNRIAPGSGPKKSVFFNSGAE 105 (420)
T ss_pred EEEECccCHHhccCCCCCHHHHHHHHHHHHh-cc--Ccccc-ccCC----hHHHHHHHHHHHhCCCCCCCEEEEeCCcHH
Confidence 44555443 245677899998888853 21 11110 0111 22333555777776422 45667779999
Q ss_pred HHHHHHHHcc--CCCCEEEEeeccCCccchhhHHhh------hCC-----ceeEEEEecCCCCC-----CC----CHHHH
Q psy13354 101 ANQAVFFSVL--NPGDTIMGMSLQEGGHLTHGMMLN------MSG-----KWFNSICYGLNKKE-----KI----DYKKV 158 (1342)
Q Consensus 101 A~~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~------~~g-----~~~~~v~~~~~~~~-----~i----d~e~L 158 (1342)
|++.+++... ....+|+.....|.++-.....+. ..+ .++..++++..... .. +++.+
T Consensus 106 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (420)
T TIGR00700 106 AVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAA 185 (420)
T ss_pred HHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHH
Confidence 9999998652 223456665444433322211110 001 01122222211000 01 24566
Q ss_pred HHHHH----hcCCeEEEEcC--CC----CCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEe
Q psy13354 159 EYLAK----KNKPKLIIAGA--SA----YSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITS 225 (1342)
Q Consensus 159 e~~i~----~~~~~liv~~~--s~----~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~ 225 (1342)
++.+. ....+.|++.+ +. .+....+++|.++|++||+++|+||++..... .+... .... .+|+++
T Consensus 186 ~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr-~g~~~a~~~~~~~pDi~~- 263 (420)
T TIGR00700 186 RAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFAR-TGAMFACEHEGPEPDLIT- 263 (420)
T ss_pred HHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcc-cchhHHHhhcCCCCCEEE-
Confidence 66653 23345566643 11 11223599999999999999999999863211 22111 1111 257664
Q ss_pred cCCccCCCC-CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhC-
Q psy13354 226 TTHKSLRGP-RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-KPDFKIYQKQVVKNAKILSKILDQR- 302 (1342)
Q Consensus 226 S~sK~l~gp-~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-~~~~~~~~~~l~~~a~~l~~~L~~~- 302 (1342)
++|.+++. +-|++++++++++.+.......++++ ++...+++.+..+.+ ++. +.++..+..+++.+.|.+.
T Consensus 264 -lsK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~~--~pl~~aaa~a~l~~l~~~~---~~~~~~~~g~~l~~~L~~l~ 337 (420)
T TIGR00700 264 -TAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAG--NPLACAAALAVLAIIESEG---LIERARQIGRLVTDRLTTLK 337 (420)
T ss_pred -eeccccCCcceEEEEecHHHHhhcCCCCcCCCCCc--CHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHH
Confidence 77999421 12999999999888765433344443 344455554555543 222 3445555555666666542
Q ss_pred ---C-cEEeeCCCCCeEEEEEccCC---CCCHHHHHHHH---HHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 303 ---G-IRIVSGGTKSHIILVDLRNK---KITGKIAESIL---ESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 303 ---g-~~~~~~~~~~~~v~i~~~~~---~~~~~~~~~ll---~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+ +..+. +. +.+.++.+.+. ..+..+...+. .++||.+.+...+ .+.+|++.+...+
T Consensus 338 ~~~~~~~~vr-g~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f--------~~~lRl~p~l~~~ 403 (420)
T TIGR00700 338 AVDPRIGDVR-GL-GAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMF--------GNIIRFLPPLTIG 403 (420)
T ss_pred hhCCCEEEee-cc-ceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCC--------CCEEEEECCCCcC
Confidence 2 22222 23 55666655322 11222333332 4569999864322 1468998765333
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-08 Score=120.25 Aligned_cols=307 Identities=14% Similarity=0.096 Sum_probs=161.1
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc--cCC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV--LNP 112 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al--~~p 112 (1342)
.+-.|.+.+|+.+.+.. .. .+. . ..... +...++.+++.+.++.. ..++|++||++|+..+++.. ...
T Consensus 71 Gh~~p~v~~ai~~q~~~-~~-~~~-~-~~~~~----~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tg 142 (443)
T PRK06058 71 GNSAPRVVEAVREQVAR-FT-HTC-F-MVTPY----EGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTG 142 (443)
T ss_pred CCCCHHHHHHHHHHHHh-cc-Ccc-c-cccCC----HHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhC
Confidence 45667799998888853 21 111 0 01112 33344566787776532 45666779999999999844 223
Q ss_pred CCEEEEeeccCCccchhhHHhh------hCC-----ceeEEEEec--CCCC--CCCC--------HHHHHHHHHhcCCeE
Q psy13354 113 GDTIMGMSLQEGGHLTHGMMLN------MSG-----KWFNSICYG--LNKK--EKID--------YKKVEYLAKKNKPKL 169 (1342)
Q Consensus 113 GD~Vlv~~~~~~~~~s~~~~~~------~~g-----~~~~~v~~~--~~~~--~~id--------~e~Le~~i~~~~~~l 169 (1342)
.++|++....|.++......+. ..+ ..+..++++ .++. ...+ .+.+++.+...+.+.
T Consensus 143 r~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAa 222 (443)
T PRK06058 143 RQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAA 222 (443)
T ss_pred CCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEE
Confidence 4677776554444322211110 000 011112211 1110 0011 122333333344566
Q ss_pred EEEcCCCCC-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC-CeeE
Q psy13354 170 IIAGASAYS-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP-RGGF 238 (1342)
Q Consensus 170 iv~~~s~~~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp-~GG~ 238 (1342)
+++.+ ..+ ....+++|.++|++||+++|.||++. |+...+... ...+ .+|+++. +|.+++. +-|+
T Consensus 223 vi~EP-i~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~t-GfgRtG~~fa~~~~gv~PDiv~~--gK~l~~G~Pi~a 298 (443)
T PRK06058 223 VIIEP-IQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQT-GFARTGAWFACEHEGIVPDLITT--AKGIAGGLPLSA 298 (443)
T ss_pred EEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcChhhhHHHhcCCCCCEEEE--cccccCCCccEE
Confidence 66643 322 23369999999999999999999986 221112111 1111 2588866 4999432 1288
Q ss_pred EEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCe
Q psy13354 239 ILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSH 314 (1342)
Q Consensus 239 iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~ 314 (1342)
+++++++++.+......+++++ +|..++++.+.++.+.+. +..++..+..+++.+.|+++ ++.....+. +.
T Consensus 299 v~~~~~i~~~~~~~~~~~T~~g--npl~~aaa~a~L~~~~~~--~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~-G~ 373 (443)
T PRK06058 299 VTGRAEIMDAPHPGGLGGTYGG--NPVACAAALAAIETIEED--DLVARARQIEALMTDRLRALAAEDDRIGDVRGR-GA 373 (443)
T ss_pred EEEcHHHHhhccCCCCCCCCCC--CHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHhhCCcEEeeecc-ce
Confidence 9999999888765433334433 455566666666654322 35677777788888888763 321111223 33
Q ss_pred EEEEEccCC---CCCH----HHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 315 IILVDLRNK---KITG----KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 315 ~v~i~~~~~---~~~~----~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++.+.+... ..+. .+...++ ++||++.+.... ...+|+..+-..+.
T Consensus 374 ~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~~~~~~~~--------~~~lr~~Ppl~~t~ 426 (443)
T PRK06058 374 MIAIELVKPGTTEPDAELTKALAAAAH-AAGVIVLTCGTY--------GNVIRLLPPLVIGD 426 (443)
T ss_pred EEEEEEecCCCCCCcHHHHHHHHHHHH-HCCeEEeccCCC--------CCEEEEECCCccCH
Confidence 344444221 1122 2333444 469999753111 13588866655443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1342 | ||||
| 3ces_A | 651 | Crystal Structure Of E.Coli Mnmg (Gida), A Highly-C | 0.0 | ||
| 3cp2_A | 649 | Crystal Structure Of Gida From E. Coli Length = 649 | 0.0 | ||
| 3g05_A | 576 | Crystal Structure Of N-Terminal Domain (2-550) Of E | 0.0 | ||
| 2zxh_A | 637 | Structure Of Aquifex Aeolicus Gida In The Form I Cr | 1e-142 | ||
| 3cp8_A | 641 | Crystal Structure Of Gida From Chlorobium Tepidum L | 1e-137 | ||
| 3pgy_A | 415 | Serine Hydroxymethyltransferase From Staphylococcus | 1e-135 | ||
| 1kkj_A | 419 | Crystal Structure Of Serine Hydroxymethyltransferas | 1e-132 | ||
| 1yjs_A | 419 | K226q Mutant Of Serine Hydroxymethyltransferase Fro | 1e-131 | ||
| 2vi8_A | 405 | Crystal Structure Of S172absshmt Internal Aldimine | 1e-131 | ||
| 2vgs_A | 407 | Crystal Structure Of E53qbsshmt Internal Aldimine L | 1e-131 | ||
| 2w7d_A | 405 | Crystal Structure Of Y51fbsshmt Internal Aldimine L | 1e-131 | ||
| 1yjy_A | 419 | K226m Mutant Of Serine Hydroxymethyltransferase Fro | 1e-131 | ||
| 2vmn_A | 405 | Crystal Structure Of N341absshmt Internal Aldimine | 1e-131 | ||
| 2vmv_A | 405 | Crystal Structure Of F351gbsshmt Internal Aldimine | 1e-131 | ||
| 2w7i_A | 405 | Crystal Structure Of Y61absshmt Internal Aldimine L | 1e-131 | ||
| 2vmr_A | 405 | Crystal Structure Of Y60absshmt Internal Aldimine L | 1e-131 | ||
| 1dfo_A | 417 | Crystal Structure At 2.4 Angstrom Resolution Of E. | 1e-126 | ||
| 1eqb_A | 417 | X-Ray Crystal Structure At 2.7 Angstroms Resolution | 1e-126 | ||
| 3g8m_A | 417 | Serine Hydroxymethyltransferase Y55f Mutant Length | 1e-126 | ||
| 3ecd_A | 425 | Crystal Structure Of Serine Hydroxymethyltransferas | 1e-126 | ||
| 3gbx_A | 420 | Serine Hydroxymethyltransferase From Salmonella Typ | 1e-122 | ||
| 2dkj_A | 407 | Crystal Structure Of T.Th.Hb8 Serine Hydroxymethylt | 1e-121 | ||
| 3n0l_A | 417 | Crystal Structure Of Serine Hydroxymethyltransferas | 1e-115 | ||
| 3h7f_A | 447 | Crystal Structure Of Serine Hydroxymethyltransferas | 1e-110 | ||
| 3ou5_A | 490 | Human Mitochondrial Serine Hydroxymethyltransferase | 2e-95 | ||
| 1xxi_B | 368 | Adp Bound E. Coli Clamp Loader Complex Length = 368 | 1e-87 | ||
| 1jr3_A | 373 | Crystal Structure Of The Processivity Clamp Loader | 1e-87 | ||
| 3glh_B | 376 | Crystal Structure Of The E. Coli Clamp Loader Bound | 1e-87 | ||
| 3glf_B | 395 | Crystal Structure Of The Ecoli Clamp Loader Bound T | 1e-87 | ||
| 1cj0_A | 470 | Crystal Structure Of Rabbit Cytosolic Serine Hydrox | 3e-87 | ||
| 1ls3_B | 483 | Crystal Structure Of The Complex Between Rabbit Cyt | 3e-87 | ||
| 3glg_B | 395 | Crystal Structure Of A Mutant (Gammat157a) E. Coli | 6e-87 | ||
| 1rvu_A | 483 | E75q Mutant Of Rabbit Cytosolic Serine Hydroxymethy | 7e-87 | ||
| 1bj4_A | 470 | Recombinant Serine Hydroxymethyltransferase (human) | 1e-86 | ||
| 1rv3_A | 483 | E75l Mutant Of Rabbit Cytosolic Serine Hydroxymethy | 2e-86 | ||
| 1eji_A | 478 | Recombinant Serine Hydroxymethyltransferase (Mouse) | 2e-81 | ||
| 1njg_A | 250 | Nucleotide-Free Form Of An Isolated E. Coli Clamp L | 5e-74 | ||
| 1iqp_A | 327 | Crystal Structure Of The Clamp Loader Small Subunit | 1e-18 | ||
| 2chg_A | 226 | Replication Factor C Domains 1 And 2 Length = 226 | 7e-14 | ||
| 2chq_A | 319 | Replication Factor C Adpnp Complex Length = 319 | 1e-13 | ||
| 1sxj_D | 353 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 9e-12 | ||
| 3g5s_A | 443 | Crystal Structure Of Thermus Thermophilus Trmfo In | 1e-11 | ||
| 3g5q_A | 443 | Crystal Structure Of Thermus Thermophilus Trmfo Len | 3e-11 | ||
| 1sxj_B | 323 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 5e-10 | ||
| 1sxj_C | 340 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 1e-09 | ||
| 3pvs_A | 447 | Structure And Biochemical Activities Of Escherichia | 2e-07 | ||
| 1jr3_E | 334 | Crystal Structure Of The Processivity Clamp Loader | 2e-07 | ||
| 1xxh_E | 334 | Atpgs Bound E. Coli Clamp Loader Complex Length = 3 | 8e-07 | ||
| 1sxj_E | 354 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 7e-04 | ||
| 2cul_A | 232 | Crystal Structure Of The Gida-Related Protein From | 9e-04 |
| >pdb|3CES|A Chain A, Crystal Structure Of E.Coli Mnmg (Gida), A Highly-Conserved Trna Modifying Enzyme Length = 651 | Back alignment and structure |
|
| >pdb|3CP2|A Chain A, Crystal Structure Of Gida From E. Coli Length = 649 | Back alignment and structure |
|
| >pdb|3G05|A Chain A, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli Mnmg Length = 576 | Back alignment and structure |
|
| >pdb|2ZXH|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form I Crystal Length = 637 | Back alignment and structure |
|
| >pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum Length = 641 | Back alignment and structure |
|
| >pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus Aureus, S95p Mutant. Length = 415 | Back alignment and structure |
|
| >pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From B.Stearothermophilus Length = 419 | Back alignment and structure |
|
| >pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Glycine Length = 419 | Back alignment and structure |
|
| >pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine Length = 407 | Back alignment and structure |
|
| >pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Serine Length = 419 | Back alignment and structure |
|
| >pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli Serine Hydroxymethyltransferase In Complex With Glycine And 5-Formyl Tetrahydrofolate Length = 417 | Back alignment and structure |
|
| >pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of Ternary Complex Between The Y65f Mutant Of E-Coli Serine Hydroxymethyltransferase, Glycine And 5-Formyl Tetrahydrofolate Length = 417 | Back alignment and structure |
|
| >pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant Length = 417 | Back alignment and structure |
|
| >pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Burkholderia Pseudomallei Length = 425 | Back alignment and structure |
|
| >pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella Typhimurium Length = 420 | Back alignment and structure |
|
| >pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine Hydroxymethyltransferase Length = 407 | Back alignment and structure |
|
| >pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Campylobacter Jejuni Length = 417 | Back alignment and structure |
|
| >pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Mycobacterium Tuberculosis Length = 447 | Back alignment and structure |
|
| >pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2 Length = 490 | Back alignment and structure |
|
| >pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex Length = 368 | Back alignment and structure |
|
| >pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii Length = 373 | Back alignment and structure |
|
| >pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide Length = 376 | Back alignment and structure |
|
| >pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer-template Dna Length = 395 | Back alignment and structure |
|
| >pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine Hydroxymethyltransferase At 2.8 Angstrom Resolution Length = 470 | Back alignment and structure |
|
| >pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic Serine Hydroxymethyltransferase And Triglu-5-Formyl-Tetrahydrofolate Length = 483 | Back alignment and structure |
|
| >pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna Length = 395 | Back alignment and structure |
|
| >pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine Hydroxymethyltransferase Length = 483 | Back alignment and structure |
|
| >pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human) Length = 470 | Back alignment and structure |
|
| >pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine Hydroxymethyltransferase, Complex With Glycine Length = 483 | Back alignment and structure |
|
| >pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse) Length = 478 | Back alignment and structure |
|
| >pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader Gamma Subunit Length = 250 | Back alignment and structure |
|
| >pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus Length = 327 | Back alignment and structure |
|
| >pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2 Length = 226 | Back alignment and structure |
|
| >pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex Length = 319 | Back alignment and structure |
|
| >pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 353 | Back alignment and structure |
|
| >pdb|3G5S|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex With Glutathione Length = 443 | Back alignment and structure |
|
| >pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo Length = 443 | Back alignment and structure |
|
| >pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 323 | Back alignment and structure |
|
| >pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 340 | Back alignment and structure |
|
| >pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli Mgsa Length = 447 | Back alignment and structure |
|
| >pdb|1JR3|E Chain E, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii Length = 334 | Back alignment and structure |
|
| >pdb|1XXH|E Chain E, Atpgs Bound E. Coli Clamp Loader Complex Length = 334 | Back alignment and structure |
|
| >pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 354 | Back alignment and structure |
|
| >pdb|2CUL|A Chain A, Crystal Structure Of The Gida-Related Protein From Thermus Thermophilus Hb8 Length = 232 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A Length = 651 | Back alignment and structure |
|---|
Score = 989 bits (2560), Expect = 0.0
Identities = 342/576 (59%), Positives = 433/576 (75%), Gaps = 11/576 (1%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG+MA A D++GIQFRILN+SKG AVRATRAQ DR+LY+QA+R
Sbjct: 78 KGHLVKEV----DALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTA 133
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL +FQ+ V+DLI++ ++++G VT++G+KF +K V+LT GTFL+GKIHIGL +YS
Sbjct: 134 LENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYS 193
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + L++RL+EL L GRLKTGTPPRID RTIDFS + +Q GD +P+PVFS +
Sbjct: 194 GGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGD-NPMPVFSFM 252
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
GN + HP+Q+ C+ITHTNEKTH++IRS SP+++G IE +GPRYCPSIEDKV RF +
Sbjct: 253 GNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADR 312
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
H IFLEPEG+ NE YPNGISTSLPF+ Q+++V+S+ GM+NA I+RPGYAIEYD+F+P
Sbjct: 313 NQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDP 372
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK +LE+K I GLFFAGQINGTTGYEEAA+QGLLAGLNAA S D++ W P R QAYL
Sbjct: 373 RDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYL 432
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL T G +EPYRMFTSRAEYRL LREDNADLRLTEIG +LG V ++W F +K
Sbjct: 433 GVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKL 492
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E I +E QRLK TW+ PS E L + E S +LL P + Y LT+L
Sbjct: 493 ENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFA 552
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
+ E +Q++IQ++YEGYI RQ +E+EK NEN LP LDY ++ LS
Sbjct: 553 P------ALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSN 606
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
E KLN +KP +IGQASRISGVTPAA+++LL++LK
Sbjct: 607 EVIAKLNDHKPASIGQASRISGVTPAAISILLVWLK 642
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} Length = 641 | Back alignment and structure |
|---|
Score = 975 bits (2523), Expect = 0.0
Identities = 251/577 (43%), Positives = 359/577 (62%), Gaps = 8/577 (1%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG + + DA+GG M A D +GIQFR+LN SKG A+ + RAQ D+ Y +R
Sbjct: 71 KGQITREI----DALGGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRI 126
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
+E++ N+ L Q+ V + + K V + G +K IL GTFLNG IHIG+ +
Sbjct: 127 VEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIHIGMDHFP 186
Query: 877 AGR-FGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSV 935
GR + L + L L S GRLKTGTPPRID R++D++ + EQ GD FS
Sbjct: 187 GGRSTAEPPVEGLTESLASLGFSFGRLKTGTPPRIDSRSVDYTIVTEQPGD-VDPVPFSF 245
Query: 936 LGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPK 995
+ +SC++T T EKTH+I+R+ F SP+F+GK++ +GPRYCPSIEDK+ RFP
Sbjct: 246 SSTSVANRNLVSCYLTKTTEKTHDILRTGFDRSPLFTGKVQGVGPRYCPSIEDKISRFPD 305
Query: 996 KKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN 1055
K SHHIFLEPEG E Y NG STSLP + QI ++SI G++ A +IRPGYAIEYD+F+
Sbjct: 306 KSSHHIFLEPEGTDTVEMYVNGFSTSLPEDIQIAGLRSIPGLEEAKMIRPGYAIEYDFFH 365
Query: 1056 PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAY 1115
P ++S++ET+ + LFFAGQINGT+GYEEAA+QGL+AG+NA ++ + GRDQAY
Sbjct: 366 PWQIRSTMETRPVENLFFAGQINGTSGYEEAAAQGLMAGINAVRKILGKELIVLGRDQAY 425
Query: 1116 LGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKK 1175
+GVL+DDLITK +EPYRMFTS AE+RL LR DNADLRL +IG+ VS E
Sbjct: 426 IGVLIDDLITKETKEPYRMFTSSAEHRLILRHDNADLRLRKIGYDCNLVSSDDLHRTESI 485
Query: 1176 REIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGI 1235
+ + L+ +K + P+ +NT + +K +L+ P ++ +
Sbjct: 486 IKRVQHCLEVMKTAKVTPAEINT-LLMNKGLQELKTPARALSLIKRPGISLQDILEHSL- 543
Query: 1236 NGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLS 1295
+ ++ + +Q++I+++YEGYI R+ ++ ++L +P N +Y + SLS
Sbjct: 544 SVRSAAEELCNDPRVAEQVQIEIKYEGYIKREQLVADRIARLDSLHIPDNFNYDSLNSLS 603
Query: 1296 IEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
E R+KL K++P TIGQASRI GV+P+ +++L+I L
Sbjct: 604 SEGREKLLKHRPATIGQASRILGVSPSDVSILMIRLG 640
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* Length = 637 | Back alignment and structure |
|---|
Score = 956 bits (2473), Expect = 0.0
Identities = 262/582 (45%), Positives = 372/582 (63%), Gaps = 30/582 (5%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG ++ + DA+GG M A D++GIQF++LN+ KG AV++ RAQ D+ Y++ ++
Sbjct: 77 KGIVVREI----DALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKV 132
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
ENQ NLY+ QEEV D+I+K N+++GV T +G+++ +K V++TTGTFLNG I+IG K
Sbjct: 133 CENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIP 192
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR G+ + L+ + R KTGTP R+DKRTIDFS +E GD DP P FS
Sbjct: 193 GGRLGEPRSEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGD-DPPPKFSFW 251
Query: 937 GN------INLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKV 990
+Q++C+IT+T KTH IIR + ++ G I+ IGPRYCPSIEDK+
Sbjct: 252 TEPVGSYWFPKGKEQVNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKI 311
Query: 991 YRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIE 1050
+FP K+ H IFLEPEG+ E YPNG+STSLP E Q E+ +SI G++N +IRP YAIE
Sbjct: 312 VKFPDKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIE 371
Query: 1051 YDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPG 1110
YD P L +LETK+I GLF AG NGTTGYEEAA QG++AG+NAAL + ++P
Sbjct: 372 YDVVPPTELYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLR 431
Query: 1111 RDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWK 1170
RD++Y+GV++DDL TKG+ EPYR+FTSR+EYRL +R+DNA LRL ++G +LG +S +Q+K
Sbjct: 432 RDESYIGVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYK 491
Query: 1171 IFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLT 1230
+ ++ I K + K ++ ++ + + Y+L ++
Sbjct: 492 LVKELEREIEKWKEFYKSERVSVAVGGDTR-SYSVATLMTMNYTLDDVKEKFGYEVPQH- 549
Query: 1231 SLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMK 1290
+K++++IQL+YE YI R+ EK K E+ K+P ++DY K
Sbjct: 550 -----------------PYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDK 592
Query: 1291 IQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
I L+ EAR+KL K+KP T+GQASRI G+TPAA+T LL+YL
Sbjct: 593 IPGLTKEAREKLKKFKPITVGQASRIDGITPAAITALLVYLG 634
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A* Length = 420 | Back alignment and structure |
|---|
Score = 736 bits (1903), Expect = 0.0
Identities = 218/382 (57%), Positives = 296/382 (77%), Gaps = 3/382 (0%)
Query: 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP 60
M+ + N++ D ++W+ + +EK RQ +IELIASENYTS VM+AQG+ LTNKYAEGYP
Sbjct: 4 MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP 63
Query: 61 GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
GKRYYGGC+++D++E++AI+R K++F A+ ANVQPHSGSQAN AV+ ++L PGDT++GM+
Sbjct: 64 GKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGMN 123
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQY 180
L +GGHLTHG +N SGK +N + YG+++ KIDY ++ LAK++KPK+II G SAYS
Sbjct: 124 LAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGV 183
Query: 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFIL 240
+D+ + IA +I +Y VDMAH AGLIAAG YPNPVP A +T+TTHK+L GPRGG IL
Sbjct: 184 VDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL 243
Query: 241 MK---KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297
K ++ K +NSAVFP QGGPLMHVIA KAVA KE ++P+FK+YQ+QV KNAK + +
Sbjct: 244 AKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVE 303
Query: 298 ILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTS 357
+ RG ++VSGGT++H+ L+DL +K +TGK A++ L ANI NKNS+PNDP+ P+ TS
Sbjct: 304 VFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTS 363
Query: 358 GIRLGSSAITTRGFSELEIIKV 379
GIR+GS A+T RGF E E+ ++
Sbjct: 364 GIRIGSPAVTRRGFKEAEVKEL 385
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... Length = 405 | Back alignment and structure |
|---|
Score = 732 bits (1892), Expect = 0.0
Identities = 214/375 (57%), Positives = 290/375 (77%), Gaps = 1/375 (0%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
+ L + DP+++ I +E++RQ+ IELIASEN+ S AVMEAQG++LTNKYAEGYPG+RYY
Sbjct: 2 KYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYY 61
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGG 125
GGC+++D++E++A R K++F AE ANVQPHSG+QAN AV+F+VL GDT++GM+L GG
Sbjct: 62 GGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGG 121
Query: 126 HLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFE 184
HLTHG +N SG +N + YG++ + IDY V A+ ++PKLI+A A+AY + IDF
Sbjct: 122 HLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAAYPRIIDFA 181
Query: 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKK 244
+F IA + +Y MVDMAH AGL+AAG +PNPVP+A F+T+TTHK+LRGPRGG IL +++
Sbjct: 182 KFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQ 241
Query: 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304
+ K I+ A+FPGIQGGPLMHVIAAKAVAF E L+ DFK Y K+VV NAK L+ L G
Sbjct: 242 FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGF 301
Query: 305 RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364
+VSGGT +H++LVDLR +++TGK AE +L+ I NKN+IP DPE P+ TSGIR+G++
Sbjct: 302 TLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTA 361
Query: 365 AITTRGFSELEIIKV 379
A+TTRGF E+ ++
Sbjct: 362 AVTTRGFGLEEMDEI 376
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} Length = 417 | Back alignment and structure |
|---|
Score = 732 bits (1891), Expect = 0.0
Identities = 200/377 (53%), Positives = 272/377 (72%), Gaps = 1/377 (0%)
Query: 4 KNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKR 63
+L D +I+++ KE +RQ +E+IASEN+T VME G++LTNKYAEGYPGKR
Sbjct: 2 NAMSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKR 61
Query: 64 YYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
YYGGC+F+D IE +AI R KK+FN + ANVQP+SGSQANQ V+ +++NPGD I+GM L
Sbjct: 62 YYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSH 121
Query: 124 GGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
GGHLTHG ++ SGK + S YG+ +IDY+KV +AKK KPKLI+ GASAY++ IDF
Sbjct: 122 GGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAYARVIDF 181
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
+F IA I +Y D+AH AGL+ AGE+P+P P+A ++STTHK+LRGPRGG I+
Sbjct: 182 AKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGGIIMTND 241
Query: 244 -KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302
+ K INSA+FPGIQGGPLMHVIAAKAV FK L ++K+Y KQV NA++L+ +L R
Sbjct: 242 EELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR 301
Query: 303 GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLG 362
++VS GT +H++L+ +++ +GK A+ L +A I NKN++P + P+ TSG+RLG
Sbjct: 302 KFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLG 361
Query: 363 SSAITTRGFSELEIIKV 379
+ A+T RGF E E+ V
Sbjct: 362 TPALTARGFKEKEMEIV 378
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} Length = 407 | Back alignment and structure |
|---|
Score = 727 bits (1880), Expect = 0.0
Identities = 210/376 (55%), Positives = 275/376 (73%), Gaps = 2/376 (0%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
+ K D ++E+I E++RQ +ELIASEN+ S V EA G++LTNKYAEGYPG RYY
Sbjct: 2 VSTLKRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYY 61
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGG 125
GGC+ ID +E +AI R K +F A ANVQPHSGSQAN AV+ +++ PGDT+MGM L GG
Sbjct: 62 GGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGG 121
Query: 126 HLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFE 184
HLTHG +N SGK + + YG+ E ID ++V LA +++PK+I+AGASAY ++ DF+
Sbjct: 122 HLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFK 181
Query: 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK- 243
F IA + +Y +VDMAH+AGL+AAG +PNP+P+A +TSTTHK+LRGPRGG IL
Sbjct: 182 AFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDP 241
Query: 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303
+ K I+ +FPGIQGGPL HVIA KAVAF E L+P+FK Y + VV+NAK L++ L +RG
Sbjct: 242 ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRG 301
Query: 304 IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGS 363
RIV+GGT +H+ LVDLR K +TGK AE L++ I NKN+IP DP+ P TSGIR+G+
Sbjct: 302 YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGT 361
Query: 364 SAITTRGFSELEIIKV 379
AITTRGF+ E+ V
Sbjct: 362 PAITTRGFTPEEMPLV 377
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} Length = 425 | Back alignment and structure |
|---|
Score = 727 bits (1878), Expect = 0.0
Identities = 218/377 (57%), Positives = 277/377 (73%), Gaps = 2/377 (0%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
+++L++ D + ILKE +RQ + +ELIASEN S AV++AQG++LTNKYAEGYPGKRY
Sbjct: 10 SQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRY 69
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEG 124
YGGC+F D +E +AI R+K++FNA ANVQPHSG+QAN AV ++ PGDT++GMSL G
Sbjct: 70 YGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAG 129
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
GHLTHG +SGKWFN++ YG+++ IDY +VE LA+++KP LIIAG SAY + +DF
Sbjct: 130 GHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDF 189
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
RF IA ++ + MVDMAH AG+IAAG + NPV A +TSTTHK+LRGPRGGF+L
Sbjct: 190 ARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLTND 249
Query: 244 -KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302
+ K INSAVFPG+QGGPLMHVIA KAVAF E L DFK Y +V+ NA+ L +L
Sbjct: 250 EEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG 309
Query: 303 GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLG 362
G+ +V+GGT +H++LVDLR K + G E LE A I CNKN IP DPEKP TSGIRLG
Sbjct: 310 GVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLG 369
Query: 363 SSAITTRGFSELEIIKV 379
+ A TTRGF E +V
Sbjct: 370 TPAGTTRGFGAAEFREV 386
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} Length = 447 | Back alignment and structure |
|---|
Score = 725 bits (1875), Expect = 0.0
Identities = 187/381 (49%), Positives = 266/381 (69%), Gaps = 6/381 (1%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
+ L+++DP I E++ KE RQ + +E+IASEN+ AV++AQG++LTNKYAEG PG+RY
Sbjct: 23 SAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRY 82
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEG 124
YGGC+ +D++E +A +R K +F AE ANVQPHSG+QAN AV ++++PG+ ++G+ L G
Sbjct: 83 YGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANG 142
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
GHLTHGM LN SGK + + YG++ ID V A + +PK+IIAG SAY + +DF
Sbjct: 143 GHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLDF 202
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
F IA + + +VDMAH+AGL+AAG +P+PVP AD +++T HK+L G R G I+ K+
Sbjct: 203 AAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGGRSGLIVGKQ 262
Query: 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL---- 299
+Y K INSAVFPG QGGPLMHVIA KAVA K P+F Q++ + A+I++ L
Sbjct: 263 QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPD 322
Query: 300 -DQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSG 358
+ G+ +VSGGT H++LVDLR+ + G+ AE +L I N+N++PNDP P TSG
Sbjct: 323 VAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSG 382
Query: 359 IRLGSSAITTRGFSELEIIKV 379
+R+G+ A+ TRGF + E +V
Sbjct: 383 LRIGTPALATRGFGDTEFTEV 403
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} SCOP: c.67.1.4 PDB: 3ou5_A Length = 490 | Back alignment and structure |
|---|
Score = 677 bits (1749), Expect = 0.0
Identities = 179/402 (44%), Positives = 251/402 (62%), Gaps = 26/402 (6%)
Query: 4 KNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKR 63
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKR
Sbjct: 31 GQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKR 90
Query: 64 YYGGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGM 119
YYGG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG+
Sbjct: 91 YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGL 150
Query: 120 SLQEGGHLTHGMM-----LNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAG 173
L +GGHLTHG M ++ + +F S+ Y LN K IDY ++ A+ +P+LIIAG
Sbjct: 151 DLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAG 210
Query: 174 ASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRG 233
SAY++ ID+ R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LRG
Sbjct: 211 TSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRG 270
Query: 234 PRGGFILMKK---------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLK 278
R G I +K ++ IN AVFP +QGGP H IAA AVA K+
Sbjct: 271 ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACT 330
Query: 279 PDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESAN 338
P F+ Y QV+KNA+ ++ L +RG +VSGGT +H++LVDLR K + G AE +LE +
Sbjct: 331 PMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVS 390
Query: 339 IICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
I NKN+ P D G+RLG+ A+T+R F E + +VV
Sbjct: 391 ITANKNTCPGD-RSAITPGGLRLGAPALTSRQFREDDFRRVV 431
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* Length = 483 | Back alignment and structure |
|---|
Score = 673 bits (1739), Expect = 0.0
Identities = 176/401 (43%), Positives = 246/401 (61%), Gaps = 26/401 (6%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
+ L D ++++II KE RQ +ELIASEN+ S AV+EA G+ L NKY+ GYPG+RY
Sbjct: 22 AQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRY 81
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG + ID +E + R + + + NVQP+SGS AN AV+ +++ P IMG+
Sbjct: 82 YGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLD 141
Query: 121 LQEGGHLTHGMM-----LNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGA 174
L +GGHLTHG M ++ + +F S+ Y +N IDY ++E A+ PKLIIAG
Sbjct: 142 LPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGT 201
Query: 175 SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234
S YS+ +D+ R IA +Y M DMAH +GL+ AG P+P +T+TTHK+LRG
Sbjct: 202 SCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGC 261
Query: 235 RGGFILMKK---------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKP 279
R G I ++ + +INSAVFPG+QGGP H IA AVA K+ + P
Sbjct: 262 RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP 321
Query: 280 DFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339
+FK YQ+QVV N + LS L + G +IV+GG+ +H+ILVDLR+K G AE +LE+ +I
Sbjct: 322 EFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSI 381
Query: 340 ICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
CNKN+ P D + SG+RLG+ A+T+RG E + KV
Sbjct: 382 ACNKNTCPGD-KSALRPSGLRLGTPALTSRGLLEKDFQKVA 421
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Length = 373 | Back alignment and structure |
|---|
Score = 547 bits (1411), Expect = 0.0
Identities = 165/361 (45%), Positives = 240/361 (66%), Gaps = 6/361 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F ++GQ H+ +L N L R+HHAYLF+GTRGVGKT+I+R+LAK LNC
Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT+ PCG C C +I+ G F+D IE+DAAS + + LL+ YAP R
Sbjct: 65 -----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L +ILN+E+I E AL L+A A+GS+RDALSLTDQAI +++ ++
Sbjct: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP 679
ML +D + +++A+ E +G ++++ N+ + + +L ++ LLH+I+++Q+SP
Sbjct: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299
Query: 680 EILIKDSPNYNE-IIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
L D + +L++ IQL+YQ + GR EL APD G MTLLR L F
Sbjct: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359
Query: 739 Q 739
Sbjct: 360 H 360
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Length = 250 | Back alignment and structure |
|---|
Score = 427 bits (1100), Expect = e-140
Identities = 129/242 (53%), Positives = 176/242 (72%), Gaps = 5/242 (2%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F ++GQ H+ +L N L R+HHAYLF+GTRGVGKT+I+R+LAK LNC
Sbjct: 12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT+ PCG C C +I+ G F+D IE+DAAS + + LL+ YAP R
Sbjct: 72 -----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 126
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 127 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 186
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L +ILN+E+I E AL L+A A+GS+RDALSLTDQAI +++ ++
Sbjct: 187 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 246
Query: 620 ML 621
ML
Sbjct: 247 ML 248
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* Length = 443 | Back alignment and structure |
|---|
Score = 304 bits (781), Expect = 2e-92
Identities = 76/393 (19%), Positives = 130/393 (33%), Gaps = 55/393 (13%)
Query: 768 LDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 827
+ G ++ A D + + A A VDR + I L L + +
Sbjct: 71 MRRAGSLVMEAADLA----------RVPAGGALA--VDREEFSGYITERLTGHPLLEVVR 118
Query: 828 EEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTS 887
EEV ++ +L TG + + LK G +
Sbjct: 119 EEVREIP------------------PGITVLATGPLTSEALAEALKRRF-GDHFLAYYDA 159
Query: 888 LAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLS 947
+ + + + ++ EE+ F +
Sbjct: 160 ASPIVLYESIDLTKCFRAGRYGQSADYLNCPMTEEEYRRFHQAL-------LEAQRHTPH 212
Query: 948 CFITHTNEKTHNIIRSEFKN--SPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEP 1005
+ + + + + G ++ +G R K+ + L
Sbjct: 213 DWEKLEFFEACVPVEELARRGYQTLLFGPMKPVGLVDP--------RTGKEPFAVVQLRQ 264
Query: 1006 EGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCN-LKSSLE 1064
E + G T L + Q L+Q I G++NA I+R G Y N L +LE
Sbjct: 265 EDKAGRMWSLVGFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHRNTYLNAPRLLGETLE 324
Query: 1065 TKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLI 1124
++ GL+ AG + G GY E+A+ G LAGLNAA + P P +++ LG LV L
Sbjct: 325 FREAEGLYAAGVLAGVEGYLESAATGFLAGLNAARKALGLPPVAP-PEESMLGGLVRYLA 383
Query: 1125 TKGIQEPYRMF-----TSRAEYRLNLREDNADL 1152
T + M+ E R+ +E +
Sbjct: 384 TANPEGFQPMYANWGLVPPVEGRMGKKEKRQAM 416
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Length = 334 | Back alignment and structure |
|---|
Score = 288 bits (740), Expect = 4e-88
Identities = 69/330 (20%), Positives = 114/330 (34%), Gaps = 35/330 (10%)
Query: 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455
+ L+ + R HHA L G+G + L++ L C + CG
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC-----QQPQGHKSCGH 61
Query: 456 CSVCVKIDNGCFMDYIEM---DAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT 512
C C + G DY + +T G++ + ++ E+ K+ + + +LT
Sbjct: 62 CRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT 121
Query: 513 HHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILN 572
A NA+LKTLEEPP F LAT EP+++ T+ SRC L V L
Sbjct: 122 DAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL----- 176
Query: 573 KENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQI 632
+ AL + GS AL+L + E + Q + + +
Sbjct: 177 SREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARETL----CQALAYSVPSGDWYSL 232
Query: 633 LDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEI 692
L AL + L L+ LL + + +
Sbjct: 233 LAALNHEQAPARLHW-----------------LATLLMDALKRHHGAAQVT-NVDVPGLV 274
Query: 693 IQLSKKFNIEQIQLFYQISIHGRNELELAP 722
+L+ + ++Q H R +L
Sbjct: 275 AELANHLSPSRLQAILGDVCHIREQLMSVT 304
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Length = 305 | Back alignment and structure |
|---|
Score = 270 bits (691), Expect = 7e-82
Identities = 51/315 (16%), Positives = 113/315 (35%), Gaps = 30/315 (9%)
Query: 420 GTRGVGKTTISRILAKCLNC-IGIDG-NGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS 477
G + +T RI+ K I I+G + + + V+ D +E+D
Sbjct: 1 GAKDQLETL-KRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG 59
Query: 478 -TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536
GI+++ + + Y+P K ++ + +T A NA LK LEEPP+Y +L T
Sbjct: 60 ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNT 119
Query: 537 TEPQKIPITVLSRCIQF------NLKKMLHHDIVNNLCYI-LNKENIKFETSALNLIATG 589
+ T+ SR + + ++ I + + L + + K A L A
Sbjct: 120 RRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEK 179
Query: 590 AQGSMR-----DALSLTDQAINYSSE-KITLNSMQEMLSIIDQKYLIQILDALAEQDGNL 643
G M + L + ++ E + + E S ++ K + D
Sbjct: 180 LSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVESKEFFALFDQ-------- 231
Query: 644 ILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQ 703
+ + + ++++ L+ ++ + + + + ++++ N
Sbjct: 232 VTNTITGKDA-----FLLIQRLTRIILHENTWESVEDQKSVSFLDSILRVKIANLNNKLT 286
Query: 704 IQLFYQISIHGRNEL 718
+ I + +
Sbjct: 287 LMNILAIHRERKRGV 301
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 Length = 232 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 3e-64
Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 13/174 (7%)
Query: 793 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFF 852
K V A A+ +L E L+LFQ L+++ N+++GV T G
Sbjct: 63 KDERVWAFHARAKYLL---------EGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPAR 113
Query: 853 SKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTP--PRI 910
+ V+L G+FL ++ +G AGR + S L + L L + P P
Sbjct: 114 GEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFVEREGEVPETPST 173
Query: 911 DKRTIDFSKMEEQIGDFDPVPVFSVLGNI-NLHPKQLSCFITHTNEKTHNIIRS 963
+ + + + L + + +E+ +
Sbjct: 174 PGYRVRYLAFHPEEWEEKTFR-LKRLEGLYAVGLCVREGDYARMSEEGKRLAEH 226
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 7e-58
Identities = 52/306 (16%), Positives = 106/306 (34%), Gaps = 56/306 (18%)
Query: 389 NFNTLIGQNHISKS---LINALDKKRLH-HAYLFTGTRGVGKTTISRILAKCLNC----- 439
++GQ ++ ++ + + ++ A L G G GKT I+ +A+ L
Sbjct: 42 ASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT 101
Query: 440 --------IGIDGNGGITSQPCGKCSVCVKIDNGC-FMDYIEMDAASTRGINEMA----- 485
+Q + + E+D ++R +A
Sbjct: 102 AIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGD 161
Query: 486 ------QLLEQTIYAPINARYK--------IYVIDEVHMLTHHAFNAMLKTLEEPPKYIK 531
++ EQ R + + IDEVHML +F+ + + LE +
Sbjct: 162 TGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV- 220
Query: 532 FILATTE------------PQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFE 579
I+AT P IPI +L R + + D L +E+++
Sbjct: 221 LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMS 280
Query: 580 TSALNLIA-TGAQGSMRDALSLTDQAINYS----SEKITLNSMQEMLSI-IDQKYLIQIL 633
A ++ G + S+R A+ L A ++ ++ ++ + S+ +D+ Q +
Sbjct: 281 EDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYM 340
Query: 634 DALAEQ 639
+
Sbjct: 341 KEYQDA 346
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 7e-37
Identities = 63/329 (19%), Positives = 133/329 (40%), Gaps = 23/329 (6%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + N L ++ L + D+ R L G G GK T L + + G+
Sbjct: 7 KYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVY 66
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG---------INEMAQ---LLEQT 491
Q + ++++ ++E+ + + E+AQ + Q
Sbjct: 67 RLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQD 126
Query: 492 IYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCI 551
+ RYK +I+E + LT A A+ +T+E+ K I+ I+ I + S+C+
Sbjct: 127 SKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCL 186
Query: 552 QFNLKKMLHHDIVNNLCYILNKENIKFET-SALNLIATGAQGSMRDALSLTDQAINYSSE 610
+I L ++ E I+ ET L IA + G++R +L L +++ +
Sbjct: 187 LIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSL-LMLESM-ALNN 244
Query: 611 KITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLH 670
++ L S ++ + ++ + ++ S+ + IE + Y ++ + +
Sbjct: 245 ELALKSSSPIIKPDWIIVIHKLTRKIVKER-----SVNSLIECRAVLYDLLAHCIP--AN 297
Query: 671 QISLIQISPEILIKDSPNYNEIIQLSKKF 699
I L +++ +L ++ N + +
Sbjct: 298 II-LKELTFSLLDVETLNTTNKSSIIEYS 325
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-30
Identities = 65/297 (21%), Positives = 124/297 (41%), Gaps = 35/297 (11%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + ++GQ+ + + L +++K + H LF+G G GKT + LA+ L
Sbjct: 10 KYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGENWR 68
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN---EMAQLLEQTIYAPINARY 500
N +IEM+A+ RGI+ + +T A +
Sbjct: 69 DN------------------------FIEMNASDERGIDVVRHKIKEFARTAPIG-GAPF 103
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKI--PITVLSRCIQFNLKKM 558
KI +DE LT A A+ +T+E K +FIL+ +I PI SRC F K +
Sbjct: 104 KIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ--SRCAVFRFKPV 161
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
+ L I KE +K L + + G R A++ Q E + +++
Sbjct: 162 PKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL-QGAAAIGEVVDADTIY 220
Query: 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YNLSYSIVLKDLSLLLHQISL 674
++ + + + +++ + + + +++ + Y +S ++ L + + +
Sbjct: 221 QITATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPI 277
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 4e-30
Identities = 84/327 (25%), Positives = 134/327 (40%), Gaps = 43/327 (13%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + ++GQ HI K L + + + H LF G GVGKTT + LA+ L
Sbjct: 18 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGENWR 76
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN---EMAQLLEQTIYAPINARY 500
N ++E++A+ RGIN E + +T A +
Sbjct: 77 HN------------------------FLELNASDERGINVIREKVKEFARTKPIG-GASF 111
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKI--PITVLSRCIQFNLKKM 558
KI +DE LT A A+ +T+E ++FIL+ KI PI SRC F + +
Sbjct: 112 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ--SRCAIFRFRPL 169
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
DI L YI E ++ L I A+G MR A+++ QA +KIT ++
Sbjct: 170 RDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINIL-QAAAALDKKITDENVF 228
Query: 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YNLSYSIVLKDLSLLLHQISL-IQ 676
+ S + + +++ + + +I + LS VL + + + +
Sbjct: 229 MVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEP 288
Query: 677 ISPEILI-------KDSPNYNEIIQLS 696
+ + NEIIQL
Sbjct: 289 KKVLLADKIGEYNFRLVEGANEIIQLE 315
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 353 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 8e-29
Identities = 68/320 (21%), Positives = 121/320 (37%), Gaps = 47/320 (14%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP N + + Q+H L L L H LF G G GKT+ L K L +
Sbjct: 30 KYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGPDLM 88
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN-------EMAQ-----LLEQT 491
+ +E++A+ RGI+ A+ +
Sbjct: 89 KS-----------------------RILELNASDERGISIVREKVKNFARLTVSKPSKHD 125
Query: 492 IYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKI--PITVLSR 549
+ YKI ++DE +T A +A+ +T+E +F L +I P+ S+
Sbjct: 126 LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA--SQ 183
Query: 550 CIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSL-----TDQA 604
C +F K + + ++ L +I +EN+K + L I + G +R ++L
Sbjct: 184 CSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQ 243
Query: 605 INYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKD 664
+ IT ++E+ ++ LI+I++ + D + I N S + V+
Sbjct: 244 YLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQ 303
Query: 665 LSLLLHQISLIQISPEILIK 684
L I+ +
Sbjct: 304 LHEYY--ITNDNFDTNFKNQ 321
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 4e-27
Identities = 62/242 (25%), Positives = 102/242 (42%), Gaps = 34/242 (14%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + ++GQ+ + + L +++K + H LF+G G GKT + LA+ L
Sbjct: 10 KYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGENWR 68
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN---EMAQLLEQTIYAPINARY 500
N +IEM+A+ RGI+ + +T A +
Sbjct: 69 DN------------------------FIEMNASDERGIDVVRHKIKEFARTAPIG-GAPF 103
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKI--PITVLSRCIQFNLKKM 558
KI +DE LT A A+ +T+E K +FIL+ +I PI SRC F K +
Sbjct: 104 KIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ--SRCAVFRFKPV 161
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
+ L I KE +K L + + G R A++ Q E + +++
Sbjct: 162 PKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL-QGAAAIGEVVDADTIY 220
Query: 619 EM 620
++
Sbjct: 221 QI 222
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 5e-27
Identities = 60/323 (18%), Positives = 121/323 (37%), Gaps = 36/323 (11%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + ++G L + H + +G G+GKTT LA L
Sbjct: 14 KYRPQVLSDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYA 72
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN---EMAQLLEQTIYAPINARY 500
+E++A+ RGI+ + Q ++
Sbjct: 73 DG------------------------VLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKH 108
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
KI ++DE +T A A+ +T+E +F A + KI + S+C K+
Sbjct: 109 KIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSD 168
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEM 620
D++ L I+ E++K+ L I A+G MR A++ Q+ + +++ ++
Sbjct: 169 EDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNL-QSTVAGHGLVNADNVFKI 227
Query: 621 LSIIDQKYLIQIL------DALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQ-IS 673
+ + ++L D++ +L + I+I S+ + + +
Sbjct: 228 VDSPHPLIVKKMLLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLE 287
Query: 674 LIQISPEILIKDSPNYNEIIQLS 696
+I+ ++ +QL+
Sbjct: 288 MIKEIGLTHMRILEGVGTYLQLA 310
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 7e-27
Identities = 67/329 (20%), Positives = 130/329 (39%), Gaps = 41/329 (12%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + + GQN + ++ +D+ +L H LF G G GKT+ LA+ +
Sbjct: 18 KYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYS 76
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQ--TIYAPINARYK 501
+E++A+ RGI+ + ++ + + +K
Sbjct: 77 NM------------------------VLELNASDDRGIDVVRNQIKDFASTRQIFSKGFK 112
Query: 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHH 561
+ ++DE +T+ A NA+ + +E K +F + K+ +LS+C +F + +
Sbjct: 113 LIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQE 172
Query: 562 DIVNNLCYILNKENIKFETSALNLIATGAQGSMRDAL----SLTDQAINYSSEKITLNSM 617
I + +L E +K +A + + G MR L S N ++I+ + +
Sbjct: 173 AIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVI 232
Query: 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YNLSYSIVLKDLSLLLHQ----- 671
E L +L ++ E D NK+ L+ +++ + +L
Sbjct: 233 YECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQN 292
Query: 672 ----ISLIQISPEILIKDSPNYNEIIQLS 696
+ L+ +I S N+ IQ S
Sbjct: 293 EETRVHLLTKLADIEYSISKGGNDQIQGS 321
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-22
Identities = 62/422 (14%), Positives = 136/422 (32%), Gaps = 92/422 (21%)
Query: 384 KYRPSNFNTLIGQNHISKSLINAL-----------------DKKRLHHAYLFTGTRGVGK 426
KY P+N + G L N L A + G G+GK
Sbjct: 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAA-MLYGPPGIGK 90
Query: 427 TTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINE--- 483
TT + ++A+ L D +E +A+ R
Sbjct: 91 TTAAHLVAQELG-----------------------------YDILEQNASDVRSKTLLNA 121
Query: 484 -----------MAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLE-EPPKYIK 531
+ +N ++ + ++DEV ++ + + +
Sbjct: 122 GVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTP 181
Query: 532 FILATTEP--QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG 589
IL E K+ C+ ++ + I + L I +E K + + ++ +
Sbjct: 182 LILICNERNLPKMR-PFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT 240
Query: 590 AQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDAL--------AEQDG 641
+G +R ++L I+ +++ I ++ E+ ++ ++ D G
Sbjct: 241 TRGDIRQVINLL-STISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIG 299
Query: 642 NLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNI 701
+ ++ +KI +Y + D + L+ Q + + P +L + + + +
Sbjct: 300 SRNFTLNDKIALYFDDF-----DFTPLMIQENYLSTRPSVLKPGQSHLEAVAEAA----- 349
Query: 702 EQIQLF--YQISIHGRNEL-ELAPDEYAGFTMTLLR-MLVFQTLHNHLDYNN--LKNSKD 755
I L + I +L L P ++ V + +++ +NSK
Sbjct: 350 NCISLGDIVEKKIRSSEQLWSLLP--LHAVLSSVYPASKVAGHMAGRINFTAWLGQNSKS 407
Query: 756 TK 757
K
Sbjct: 408 AK 409
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 99.4 bits (247), Expect = 8e-22
Identities = 59/352 (16%), Positives = 106/352 (30%), Gaps = 51/352 (14%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E +S I ++E N L + + Y L + ++A G Y
Sbjct: 14 ETVSMIPRDERLKKMQE--AGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMMGDEAY 71
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGG 125
G + +E+ ++++F + V H G A + + PG + G
Sbjct: 72 AGSENFYHLER----TVQELFGFKHI-VPTHQGRGAENLLSQLAIKPGQYVAGNMY---F 123
Query: 126 HLTHGMMLNMSGKWFNSICYG-------LNKKEKIDYKKVEYLAKKNKPKLI-------- 170
T + + + + K ID KK++ L + + I
Sbjct: 124 TTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVT 183
Query: 171 --IAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAG-----LIAAGEYPNPVP----- 218
+AG S + + + D + N
Sbjct: 184 VNLAGGQPVSM-ANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVH 242
Query: 219 ----FADFITSTTHKSLRGPRGGFILMKKK--YKKIINSAVFPG---IQGGPLMHVIAAK 269
+AD T + K GGF+ M + V GG + A
Sbjct: 243 EMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAM 302
Query: 270 AVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLR 321
A+ +E ++ + Y + VK + L L G+ IV H + +D R
Sbjct: 303 AIGLREAMQYE---YIEHRVKQVRYLGDKLKAAGVPIVE-PVGGHAVFLDAR 350
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 89.9 bits (222), Expect = 3e-18
Identities = 100/629 (15%), Positives = 200/629 (31%), Gaps = 152/629 (24%)
Query: 150 KEKIDYKKVE-----YLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHY 204
+ D K V+ L+K+ +I++ + F + + F+ ++
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 205 AGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSA-VFPGIQGGPLM 263
Y F+ S R P + ++ ++ N VF
Sbjct: 90 -------NYK-------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK------Y 129
Query: 264 HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSG--GT-KSHIILVDL 320
+V + Y K ++ A L ++ + + ++ G G+ K+ + L
Sbjct: 130 NV-------------SRLQPYLK--LRQA--LLELRPAKNV-LIDGVLGSGKTWVALDVC 171
Query: 321 RNKKIT----GKI----------AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366
+ K+ KI E++LE + + PN + +S I+L +I
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRIHSI 230
Query: 367 TTRGFSELEIIKVVLARKYRPS--------------NFN----TLIGQNHIS--KSLINA 406
L + ++ Y FN L+ + K + +
Sbjct: 231 QAE-LRRL-----LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL----TTRFKQVTDF 280
Query: 407 LDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGC 466
L H L + + + +L K L+C D + + +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----LPREVL-TTNPRR------ 329
Query: 467 FMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+ + A S R + + +K D++ + + N L+ E
Sbjct: 330 ----LSIIAESIR---DGLATWD---------NWKHVNCDKLTTIIESSLNV-LEPAEYR 372
Query: 527 PKYIKF-ILATTEPQ--KIPITVLSRCIQFNLKKMLHHDIVNNLC-YILNKENIKFETSA 582
+ + + P IP +LS I F++ K +VN L Y L ++ K T +
Sbjct: 373 KMFDRLSVF----PPSAHIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 583 LNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILD---ALAEQ 639
+ I + + + +L +++ + T +S + +DQ Y + E
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-YFYSHIGHHLKNIEH 486
Query: 640 DG------NLILS---IANKIE----IYNLSYSI--VLKDLSLLLHQISLIQISPEILIK 684
+ L + KI +N S SI L+ L I E L+
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 685 D----SPNYNEIIQLSKKFNIEQIQLFYQ 709
P E + SK ++ +I L +
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAE 575
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 1e-16
Identities = 118/760 (15%), Positives = 220/760 (28%), Gaps = 240/760 (31%)
Query: 241 MKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQ-----KQVVKNAKIL 295
+ +YK I+ V F++ +F K ++ +I
Sbjct: 14 HQYQYKDIL--------------SV-------FEDAFVDNFDCKDVQDMPKSILSKEEI- 51
Query: 296 SKIL-----DQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILES-----ANIICNKNS 345
I+ +R+ + + +++ K E +L + I +
Sbjct: 52 DHIIMSKDAVSGTLRL--------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 346 IPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVVLARKYRPSNFNTLIGQNHISKSLIN 405
P+ + Y RL + + F++ + R + L
Sbjct: 104 QPSMMTRMYIEQRDRLYND---NQVFAKYNV--------SRLQPYLKLR----------Q 142
Query: 406 ALDKKRLHHAYLFT-GTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDN 464
AL + R + G G GKT +A C V K+D
Sbjct: 143 ALLELR-PAKNVLIDGVLGSGKTW----VA---------------LDVCLSYKVQCKMDF 182
Query: 465 GCFMDYIEM-DAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTL 523
F ++ + + S + EM Q L I +R + H+ N L+ +
Sbjct: 183 KIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSR------------SDHSSNIKLR-I 227
Query: 524 EEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIK-FETSA 582
++ +L + + L ++ N+ N + F S
Sbjct: 228 HSIQAELRRLLKSKP----------------YENCL--LVLLNVQ---NAKAWNAFNLSC 266
Query: 583 LNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ------EMLSIIDQKYLIQILDAL 636
L+ T R +TD ++ I+L+ E+ S++ KYL L
Sbjct: 267 KILLTT------RFK-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDL 318
Query: 637 AEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLS 696
+ + +S+I E I+D
Sbjct: 319 PRE--------VLTT--------------NPRR--LSII---AE-SIRDGLA---TWDNW 347
Query: 697 KKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRML-VFQTLHNHLDYNNLKNSKD 755
K N +++ + S+ N LE P EY + L VF
Sbjct: 348 KHVNCDKLTTIIESSL---NVLE--PAEYR----KMFDRLSVFP--------------PS 384
Query: 756 TKGNLI-HAVLTVL-DAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAI 813
I +L+++ + ++N + V++ + I
Sbjct: 385 AH---IPTILLSLIWFDV---------IKSDVMVVVNKL------HKYSLVEKQPKESTI 426
Query: 814 RFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTT--GTFLNGKIHI 870
++YL + ++++ I+ I F S +I F + HI
Sbjct: 427 SIP-----SIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYS---HI 477
Query: 871 G--LKSYS-AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDF 927
G LK+ R F L R E ++ H I + I D
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 928 DPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKN 967
D P + L N L F+ E N+I S++ +
Sbjct: 538 D--PKYERLVNAILD------FLPKIEE---NLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 2e-14
Identities = 103/605 (17%), Positives = 178/605 (29%), Gaps = 183/605 (30%)
Query: 816 YLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGI---------KFFSKTVILTTGTFLNG 866
+++ L +EE+D +I+ + + G + + F + V+ FL
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 867 KIH-------IGLKSYSAGR---FGD---FS---------TTSLAKRLKELQLS-----H 899
I + + Y R + D F+ L + L EL+ +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 900 GRLKTGTPPRIDKR--TIDFSKMEEQIGDFDPVPVFSV-LGNIN---LHPKQLSCFITHT 953
G L +G K +D + +F + L N N + L
Sbjct: 157 GVLGSG------KTWVALDVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEML------- 202
Query: 954 NEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEY 1013
+K I + + S I SI+ ++ R K K
Sbjct: 203 -QKLLYQIDPNWTSRSDHSSNI----KLRIHSIQAELRRLLKSKP--------------- 242
Query: 1014 YPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP-CNLKSSLETKQIHGLF 1072
Y N L LV + ++NA + FN C K L T+
Sbjct: 243 YEN----CL-------LV--LLNVQNAKAW--------NAFNLSC--KILLTTRFKQVTD 279
Query: 1073 FAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDL---ITKG-- 1127
F T + S L +L + YL DL +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLK------------YLDCRPQDLPREVLTTNP 327
Query: 1128 -----IQEPYRMFTSRAEYRLNLREDNADLRLTE-IGWKLGCVS-------YKQWKIFEK 1174
I E R + + + N D +LT I L + + + +F
Sbjct: 328 RRLSIIAESIRDGLATWDN---WKHVNCD-KLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 1175 KREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSL-- 1232
I T L + W + + V+ K H+YSL + P + ++ S+
Sbjct: 384 SAHIPTILLSLI---WFDVI---KSDVMVVVNKL--HKYSL--VEKQPKESTISIPSIYL 433
Query: 1233 ----KGINGKNLYNT--EIYQE----DIKKQLKIQL-----QYEGYILRQINEVEKNKIN 1277
K N L+ + + Y D + L + G+ L+ I E+ +
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 1278 ENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLK 1337
+ L + +++ QK+ A SG L L Y K
Sbjct: 494 RMVFL--DFRFLE---------QKIRH-----DSTAWNASGSILNTLQQLKFY------K 531
Query: 1338 NFIKK 1342
+I
Sbjct: 532 PYICD 536
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 1e-08
Identities = 65/551 (11%), Positives = 153/551 (27%), Gaps = 171/551 (31%)
Query: 915 IDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRS-EFK---NSP- 969
+DF E Q D + VF C + +I+ E S
Sbjct: 7 MDFETGEHQYQYKDILSVF--EDAFV---DNFDC--KDVQDMPKSILSKEEIDHIIMSKD 59
Query: 970 ----------IFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVI--NEYYPNG 1017
K E + ++ + Y+F +P + E
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 1018 ISTSLPF--------EAQIELVQS-----------IDGMKNANIIRPGYAIEYDYFNPCN 1058
+ + F + ++L Q+ IDG+ + G
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-----G------------ 162
Query: 1059 LKSSL--ETKQIHGL--FFAGQIN-GTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQ 1113
K+ + + + + +I + +L L L Q W D
Sbjct: 163 -KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET-VLEMLQ-KLLYQIDPNWTSRSDH 219
Query: 1114 AY-------------------------LGVLVDDLITKGIQEPY----RM-FTSR----- 1138
+ L VL ++ + ++ T+R
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 1139 ----AEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLKDTWINPS 1194
A ++ D+ + LT + + K + ++L R T NP
Sbjct: 279 DFLSAATTTHISLDHHSMTLTP---------DEVKSLLLKYLDCRPQDLPREVLT-TNPR 328
Query: 1195 ILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTS--------LKGINGKNLYNT-EI 1245
L+ ++ + I+ + + W +VN + LT+ L+ + +++ +
Sbjct: 329 RLS------IIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 1246 YQEDIK---KQLKI---QLQYE--GYILRQINE---VEKNKINENLKLPHNLDYMKIQSL 1294
+ L + + ++ ++++ VEK + + ++ Y++++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSI-YLELKVK 438
Query: 1295 S----------IEARQKLNKYKPETIGQASR-----------ISGVTPAALTLLL--IYL 1331
++ + + + + + L ++L
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 1332 KSGFLKNFIKK 1342
FL+ I+
Sbjct: 499 DFRFLEQKIRH 509
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Length = 324 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 7e-17
Identities = 51/325 (15%), Positives = 97/325 (29%), Gaps = 75/325 (23%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRPS + I ++ + K ++ H L + + G GKTT+++ L +N
Sbjct: 19 KYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA---- 74
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN-------EMAQLLEQTIYAPI 496
D + ++ S I+ A A
Sbjct: 75 -------------------------DMMFVNG-SDCKIDFVRGPLTNFASA------ASF 102
Query: 497 NARYKIYVIDEV-HMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKI--PITVLSRCIQF 553
+ R K+ VIDE + + +E I+ I P+ SRC
Sbjct: 103 DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPL--QSRCRVI 160
Query: 554 -------NLKKMLHHDIVNNLCYILNKENIKF-ETSALNLIATGAQGSMRDALSLTDQAI 605
K + ++ L I E I + + + R + I
Sbjct: 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR-------KTI 213
Query: 606 NY-----SSEKITLNSMQEMLSIIDQKYLI-QILDALAEQDGNLILSIANKIEIYNLSYS 659
S + + + + + I +L++L +D + + Y YS
Sbjct: 214 GELDSYSSKGVLDAGILSL---VTNDRGAIDDVLESLKNKD---VKQLRALAPKYAADYS 267
Query: 660 IVLKDLSLLLHQISLIQISPEILIK 684
+ L+ ++ Q +
Sbjct: 268 WFVGKLAEEIYSRVTPQSIIRMYEI 292
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 2e-09
Identities = 60/271 (22%), Positives = 96/271 (35%), Gaps = 73/271 (26%)
Query: 381 LARKYRPSNFNTLIGQNHI---SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
LA + RP N IGQ H+ K L A++ LH + + G G GKTT++ ++A+
Sbjct: 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLH-SMILWGPPGTGKTTLAEVIARYA 74
Query: 438 NCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPIN 497
N D + A ++ G+ E+ + +E+
Sbjct: 75 NA-----------------------------DVERISAVTS-GVKEIREAIERARQNRNA 104
Query: 498 ARYKIYVIDEVHMLTHHAFN-----AMLKTLEEPPKYIKFILATTE--------PQKIPI 544
R I +DEV H FN A L +E+ I FI ATTE
Sbjct: 105 GRRTILFVDEV-----HRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA----- 152
Query: 545 TVLSRCIQFNLKKMLHHDI-------VNNLCYILNKENIKFETSALNLIATGAQGSMRDA 597
+LSR + LK + DI + + ++I IA G R A
Sbjct: 153 -LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRA 211
Query: 598 LSLTDQAINYSSE------KITLNSMQEMLS 622
L+ + + + + + E+
Sbjct: 212 LNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 1e-08
Identities = 62/358 (17%), Positives = 108/358 (30%), Gaps = 54/358 (15%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E + + E LKE N L +S Y L + +++A G Y
Sbjct: 15 EKIRVPSREEREAALKE--AGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAY 72
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGG 125
G + ++ + K++FN + + H G A +F +L
Sbjct: 73 AGSRNYYDLKD----KAKELFNYDYI-IPAHQGRGAENILFPVLLKYKQKEGKAKNPVFI 127
Query: 126 HLTH-----GMMLNMSGKWFNSICYGL-------NKKEKIDYKKVEYLAKKNKPKLI--- 170
H + K N + + K D KK++ ++ I
Sbjct: 128 SNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAI 187
Query: 171 -------IAGASAYSQYIDFERFYHIAKNINSYFMVDMAH--------------YAGLIA 209
AG S + + Y IAK + ++D A Y
Sbjct: 188 VSTVTCNSAGGQPVSM-SNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATI 246
Query: 210 AGEYPNPVPFADFITSTTHKSLRGPRGGFILMK------KKYKKIINSAVFPGIQGGPLM 263
+ +AD +T + K GG + ++ ++ GG
Sbjct: 247 KEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAG 306
Query: 264 HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLR 321
+AA +E + + Y + K L L + GI I T H + VD +
Sbjct: 307 RDMAAMVQGLEEGTEEE---YLHYRIGQVKYLGDRLREAGIPIQY-PTGGHAVFVDCK 360
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-08
Identities = 38/261 (14%), Positives = 90/261 (34%), Gaps = 27/261 (10%)
Query: 99 SQANQAVFFSVLNPGDTIMGMSLQEGGH--LTHGMMLNMSG---KWFN-SICYGLNKKEK 152
+ +V S I+ + H + H + +S + N K
Sbjct: 82 TSGILSVIQSFSQKKGDIL---MARNVHKSVLHALD--ISQQEGHFIETHQSPLTNHYNK 136
Query: 153 IDYKKVEYLAKKNKPKLIIAGASAYSQYI-DFERFYHIAKNINSYFMVDMAHYAGLIAAG 211
++ ++ + KL++ Y + E +N ++D AH A G
Sbjct: 137 VNLSRLNN----DGHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQG 192
Query: 212 EYPNPVPF-ADFITSTTHKSLRGPRGGFILMKKK---YKKIINSAVFPGIQGGPLMHVIA 267
+ + + AD++ + HK+L G +L K Y++ I + P ++A
Sbjct: 193 FPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMA 252
Query: 268 AKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327
+ A + D ++ + + + L+ +G ++ ++ ++ + TG
Sbjct: 253 SLESAAQFYKTYDSTLFFAKRAQLI----ECLENKGFEMLQVDDPLKLL---IKYEGFTG 305
Query: 328 KIAESILESANIICNKNSIPN 348
++ +A+I
Sbjct: 306 HDIQNWFMNAHIYLELADDYQ 326
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 9e-07
Identities = 38/299 (12%), Positives = 88/299 (29%), Gaps = 26/299 (8%)
Query: 378 KVVLARKYRPSNFNTLIG----QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRIL 433
KV + + + ++ + + G G GKT +S+ +
Sbjct: 10 KVFIDPLSVFKE---IPFREDILRDAAIAIRYFVKNEVKFSNLF-LGLTGTGKTFVSKYI 65
Query: 434 AKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA----STRGINEMAQLLE 489
+ + + + C ++ + S
Sbjct: 66 FNEIEEVKKEDEEYKDVKQA--YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYI 123
Query: 490 QTIYAPINARYKIYVIDEV-HMLTHHAFNAMLKTLEEPPKYIKFILATTE---PQKIPIT 545
I I +DEV ++ + +L L I I+ + + +
Sbjct: 124 DKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPR 183
Query: 546 VLSRCIQFNLKKMLHHDIVNNLCYILNKENIK---FETSALNLIA---TGAQGSMRDALS 599
VLS + K + + + + + ++ L+ IA G R A++
Sbjct: 184 VLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVN 243
Query: 600 LTDQAINY--SSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNL 656
L +A I + + + +Q+ LI+ + AL + S+ ++ +
Sbjct: 244 LLFRAAQLASGGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIESEDVMSA 302
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 6e-05
Identities = 44/340 (12%), Positives = 96/340 (28%), Gaps = 43/340 (12%)
Query: 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGH--LTHGMML 133
+ ++F A+ + S +N+ + + + D ++ + H + G+ML
Sbjct: 208 GESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVV---VDRNCHKSIEQGLML 264
Query: 134 -NMSGKWFNSI-----CYGLNKKEKIDYKKVEYLAKKN---------KPKLIIAGASAYS 178
+ G +++ + ++ ++ KP + Y
Sbjct: 265 TGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYD 324
Query: 179 QYI-DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF----------ADFITSTT 227
+ + + + + D A Y Y + F T +T
Sbjct: 325 GVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHST 384
Query: 228 HKSLRGPR-GGFILMKKKYKKI----INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFK 282
HK L +I +++ I N A PL + A+ VA +
Sbjct: 385 HKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGL 444
Query: 283 IYQKQVVKNA-KILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIIC 341
++V+ A + G ++ TGK + ++
Sbjct: 445 SLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLT 504
Query: 342 NKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVVL 381
+ G +S L+ IKV +
Sbjct: 505 ------TVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSI 538
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 8e-05
Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 18/157 (11%)
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEP---------PKYIKFILATTE---PQKIPITVLS 548
+ +DEVHML F + + LE + I T + P IP+ +L
Sbjct: 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD 356
Query: 549 RCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT-GAQGSMRDALSL----TDQ 603
R + ++ + E I ALN + G + ++R ++ L
Sbjct: 357 RVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLL 416
Query: 604 AINYSSEKITLNSMQEMLSI-IDQKYLIQILDALAEQ 639
A + I ++E+ + D K +IL ++
Sbjct: 417 AKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDK 453
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* Length = 401 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 65/281 (23%), Positives = 96/281 (34%), Gaps = 43/281 (15%)
Query: 80 NRLKKIFNAEAANVQPHSGSQANQAVFFS--VLNPGDTIMGMSLQEGGHLTHGMMLNMSG 137
+ + EAA V S AN A + VL PG I H
Sbjct: 98 AEIAGLHQKEAALVFS-SAYNANDATLSTLRVLFPGLIIYS---DSLNH----------- 142
Query: 138 KWFNSICYG--LNKKEKIDYK--KVEYL------AKKNKPKLIIAGASAYSQYIDF---E 184
S+ G N K ++ V +L PKLI A S YS DF +
Sbjct: 143 ---ASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLI-AFESVYSMDGDFGPIK 198
Query: 185 RFYHIAKNINSYFMVDMAHYAGLIAA-----GEYPNPVPFADFITSTTHKSLRGPRGGFI 239
IA+ + +D H G+ E + D T K+ G GG+I
Sbjct: 199 EICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY-GVFGGYI 257
Query: 240 LMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKI 298
+ + S I L IAA A A LK + + + +AK+L
Sbjct: 258 AASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMR 317
Query: 299 LDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339
L G+ I SHI+ V + + T +++ +L +
Sbjct: 318 LKALGMPI--IDHGSHIVPVVIGDPVHTKAVSDMLLSDYGV 356
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 408 DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDG 444
HH Y+ G G GK+ ++ +A L+ +DG
Sbjct: 3 TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 58/265 (21%), Positives = 100/265 (37%), Gaps = 52/265 (19%)
Query: 97 SGSQANQAVFFSVLNPGDTIMG-----MSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKE 151
S AN +F ++L P D I+ S+ +G L Y N
Sbjct: 111 SCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQR----------YRYKNNAMG 160
Query: 152 KIDYKKVEYLAKKNKPKLIIA-------GASAYSQYIDFERFYHIAKNINSYFMVDMAHY 204
++ K E K + KLI G A D + +A N+ MVD +H
Sbjct: 161 DLEAKLKEADEKGARFKLIATDGVFSMDGIIA-----DLKSICDLADKYNALVMVDDSHA 215
Query: 205 AGLIAAG-----EYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKK-IINSA---VF- 254
G I EY D +T T K+L G GG+ K+ + + N + +F
Sbjct: 216 VGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGHKEIIEWLRNRSRPYLFS 275
Query: 255 ----PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG 310
P ++A E+LK + +KQ+ +N++ +++ G ++
Sbjct: 276 NTVAPV--------IVATSLKVL-ELLKTEGPQLRKQLQENSRYFRAGMEKLGFQL--VP 324
Query: 311 TKSHIILVDLRNKKITGKIAESILE 335
II V L + ++ +A+ +L+
Sbjct: 325 GNHPIIPVMLGDAQLATNMADHLLQ 349
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1342 | |||
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 100.0 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 100.0 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 100.0 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 100.0 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 100.0 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 100.0 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 100.0 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 100.0 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 100.0 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 100.0 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 100.0 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 100.0 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 100.0 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 100.0 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 100.0 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 100.0 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 100.0 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 100.0 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 100.0 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 100.0 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.97 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.97 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.97 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.96 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.94 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.93 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.9 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.9 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.89 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.89 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.89 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.89 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.89 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.89 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.88 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.88 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.88 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.88 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.88 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.88 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.88 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.88 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.88 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.88 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.88 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.88 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.88 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.87 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.87 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.87 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.87 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.87 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.87 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.87 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.87 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.87 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.87 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.87 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.86 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.86 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.86 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.86 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.86 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.86 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.86 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.86 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.86 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.86 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.86 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.86 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.86 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.86 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.86 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.86 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.86 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.86 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.85 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.85 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.85 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.85 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.85 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.85 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.85 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.85 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.85 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.85 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.85 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.85 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.85 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.85 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.85 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.84 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.84 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.84 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.84 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.84 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.84 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.84 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.84 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.84 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.84 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.84 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.84 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.84 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.83 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.83 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.83 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.83 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.83 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.83 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.83 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.82 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.82 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.82 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.82 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.82 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.82 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.81 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.81 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.81 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.81 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.81 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.81 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.81 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.8 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.8 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.8 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.8 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.8 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.8 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.79 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.79 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.79 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.79 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.79 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.79 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.79 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.79 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.79 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.79 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.79 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.78 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.78 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.78 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.78 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.78 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.78 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.78 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.78 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.78 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.78 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.78 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.77 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.77 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.77 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.77 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.77 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.77 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.77 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.77 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.76 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.76 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.76 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.76 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.63 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.76 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.76 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.76 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 99.75 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.75 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.75 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.75 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.75 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.75 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.75 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.74 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.74 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.74 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.74 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.74 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.74 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.74 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.73 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.73 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.73 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.73 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.72 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.72 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.72 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.72 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.72 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.71 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.71 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.71 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.71 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.7 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.69 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.69 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.69 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.69 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.69 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.68 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.68 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.68 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.68 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.68 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.68 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.68 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.68 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.68 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.68 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.67 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.67 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.67 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.67 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.66 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 99.66 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.66 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 99.66 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.66 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.65 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.65 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.65 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.65 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.65 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.64 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 99.64 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.64 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 99.63 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 99.63 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.63 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 99.63 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.63 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.62 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.62 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.62 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.61 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.61 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.61 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.61 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.61 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.61 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 99.61 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 99.61 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.61 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.61 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.6 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 99.6 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.6 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.6 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.59 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 99.59 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 99.58 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 99.58 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.57 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.57 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.57 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 99.57 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.57 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 99.57 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.56 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.56 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.56 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.56 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 99.56 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.55 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.55 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.54 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.53 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.53 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.53 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.53 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 99.52 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.52 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.52 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.52 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.52 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.51 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.51 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.5 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.49 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.49 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.49 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.48 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.47 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.46 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.44 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.44 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.44 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.41 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.41 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 99.38 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.37 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.36 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.35 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.35 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.35 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.33 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.31 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 98.98 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.3 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.29 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.28 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.28 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.27 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.26 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.26 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.25 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.24 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 99.24 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.22 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.21 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.17 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.17 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.16 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 99.16 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.15 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.12 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.07 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.05 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.05 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.86 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 98.83 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 98.82 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 98.82 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.82 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 98.73 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 98.7 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.68 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.64 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 98.61 | |
| 1jql_B | 140 | DNA polymerase III, delta subunit; processivity cl | 98.58 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 98.54 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 98.52 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.47 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 98.44 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 98.22 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 98.16 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 98.1 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 98.04 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.02 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 97.92 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 97.89 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 97.73 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 97.7 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 97.7 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 97.64 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 97.56 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 97.55 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 97.51 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 97.38 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.36 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 97.17 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 97.1 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 97.09 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 96.91 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 96.82 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 96.76 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 96.58 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 96.22 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.04 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 95.88 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 95.8 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 95.53 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 95.25 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 95.15 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.09 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 94.97 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 94.66 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 94.63 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 94.51 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 94.48 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 94.27 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 94.19 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 93.9 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 93.88 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 93.7 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 93.66 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 93.49 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 93.23 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 93.17 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 92.96 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 92.89 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 92.68 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 92.44 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 92.37 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 92.35 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 92.28 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 92.07 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 92.02 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 91.99 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 91.82 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 91.81 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 91.79 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 91.77 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 91.77 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 91.69 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 91.48 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 91.42 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 91.36 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 91.25 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 91.06 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 91.05 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 90.92 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 90.73 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 90.72 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 90.63 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 90.49 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 90.45 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 90.42 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 90.29 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 90.18 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 90.16 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 90.15 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 90.13 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 90.13 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 90.11 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 90.06 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 89.95 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 89.9 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 89.86 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 89.84 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 89.82 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 89.78 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 89.77 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 89.75 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 89.71 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 89.71 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 89.67 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 89.63 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 89.56 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 89.52 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 89.48 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 89.46 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 89.4 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 89.36 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 89.35 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 89.34 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 89.28 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 89.13 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 88.9 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 88.82 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 88.8 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 88.7 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 88.66 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 88.63 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 88.59 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 88.56 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 88.53 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 88.5 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 88.35 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 88.35 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 88.13 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 88.03 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 88.0 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 87.91 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 87.85 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 87.78 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 87.55 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 87.54 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 87.46 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 87.32 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 87.25 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 87.23 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 87.17 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 87.16 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 87.15 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 87.12 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 87.1 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 87.0 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 86.94 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 86.93 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 86.61 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 86.31 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 86.31 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 86.16 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 86.14 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 86.13 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 85.94 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 85.94 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 85.91 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 85.85 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 85.85 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 85.81 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 85.7 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 85.7 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 85.65 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 85.53 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 85.52 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 85.34 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 85.24 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 85.04 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 85.03 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 84.99 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 84.92 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 84.85 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 84.71 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 84.67 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 84.59 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 84.54 |
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-143 Score=1321.73 Aligned_cols=552 Identities=48% Similarity=0.767 Sum_probs=517.3
Q ss_pred hhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCCeE
Q psy13354 761 IHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKI 840 (1342)
Q Consensus 761 ~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~ 840 (1342)
..++++|++++||.|++.+|.+++||+++|.+|||+||++|+|+||..|.+.|++.+++++|++|++.+|++|..++++|
T Consensus 77 ~g~lv~eldalgg~~~~~~d~~gi~f~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V 156 (637)
T 2zxi_A 77 KGIVVREIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQV 156 (637)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBE
T ss_pred hHHHHHHHHHhhhHHHHHhhhcccceeecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHcCCCccccccCCCcccccCccccccc
Q psy13354 841 LGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKM 920 (1342)
Q Consensus 841 ~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~~~~~ 920 (1342)
.||++.+|..+.|++||+|||||+++.+|+|...+++||.|+.+|.+++..|+++|+++.+++||||||++++||||+++
T Consensus 157 ~GV~t~dG~~i~AdaVVLATG~~s~~~~~~G~~~~~~Gr~G~~~A~~la~~L~~lG~~v~~l~tgtppRi~~~sId~~~~ 236 (637)
T 2zxi_A 157 VGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSAL 236 (637)
T ss_dssp EEEEETTSCEEECSEEEECCTTCBTCEEEETTEEEECSBTTBCCBCTHHHHHHHTTCCCEEEEEEECCEEEGGGCCCTTS
T ss_pred EEEEECCCcEEEeCEEEEccCCCccCceeccceecCCCCCCchhHHHHHHHHHhcCCceEEecCCcCceecccccCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCcccccCCCCC------CCCccccchhhcchhHHHHHHhhcccCCCCccccccccCCCCCCcccccccCC
Q psy13354 921 EEQIGDFDPVPVFSVLGNINL------HPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFP 994 (1342)
Q Consensus 921 ~~~~~d~~~~~~f~~~~~~~~------~~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~k~~~~~ 994 (1342)
..|+|| ..+.+|||++.... ..+|++||+|+|++++|++|+.|++.+|+|+|.++++|||||||||+|++||+
T Consensus 237 ~~q~~d-~~~~~fs~~~~~~~~~~~~~~~~ql~c~~t~t~~~~~~ii~~~l~~~~~~~g~i~~~Gprycpsie~k~~rf~ 315 (637)
T 2zxi_A 237 EVAPGD-DPPPKFSFWTEPVGSYWFPKGKEQVNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKIVKFP 315 (637)
T ss_dssp EEECCC-SSCBCSCSSSSSTTCSBCCTTCCCCCEEEEECCHHHHHHHHHTC---------------CCCCSHHHHHHHCT
T ss_pred ccccCC-CCCCCccccCCCcccccccCcccceeccccCccHHHHHHHHhcchhccccCccccccCCccCcchhhhhcccC
Confidence 999999 99999999987421 24699999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeec
Q psy13354 995 KKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFA 1074 (1342)
Q Consensus 995 ~~~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~a 1074 (1342)
+|++|++|||||++++.++|++|+||+||+++|.+++++|||||||+|+||||+||||||||++|++|||+|.++|||||
T Consensus 316 dk~~h~i~lepEg~~~~~~y~~G~stslp~~~Q~~~~~~ipGle~a~~~r~Gy~ieyd~i~p~~l~~tLe~k~~~gLf~A 395 (637)
T 2zxi_A 316 DKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLETKKIRGLFHA 395 (637)
T ss_dssp TCSCCEEEEEECCSSCCEEEEETCCCCSCHHHHHHHHTTSTTCTTCCEEECCEEEEEEECCGGGBCTTSBBSSSBTEEEC
T ss_pred CcccceeeeccccccCceeeecCCCCcCCHHHHHHHHhhCcCcccceEeccccccccceEchhhcCccccccCCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcCCCCccccccchhhhhhhccCccccccc
Q psy13354 1075 GQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRL 1154 (1342)
Q Consensus 1075 Gqi~g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~~~epyrm~tsr~e~r~~lr~dna~~rl 1154 (1342)
||||||+|||||||||++||+|||++++|++||+|+|++|||||||||||||||+||||||||||||||+||+||||+||
T Consensus 396 GqinGt~GyeEAaaqGl~AG~nAa~~~~~~~~~~~~r~~ayig~liddl~t~g~~epyrm~tsrae~rl~lr~dnad~rl 475 (637)
T 2zxi_A 396 GNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRL 475 (637)
T ss_dssp GGGGTBCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTCHHHHHHHHHHHHCCSSCBCGGGCCCTTTTTSCSTTHHHHH
T ss_pred eecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCChhheehhhHHHHHhhcCCCchhhhcccHHHHHHHhccCChhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccCcccccccCHHhhhcCCCCChhhHhc-cc
Q psy13354 1155 TEIGWKLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTS-LK 1233 (1342)
Q Consensus 1155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~-~~ 1233 (1342)
||+||++|||+++||+.|++|++.+++++++|++++++|. . .. . ....|++|+|+ |+++|++|.+ +.
T Consensus 476 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--------~~-~-~~~~~~~~~l~-~~~~~~~~~~~~~ 543 (637)
T 2zxi_A 476 AKLGRELGLLSEEQYKLVKELEREIEKWKEFYKSERVSVA-V--------GG-D-TRSYSVATLMT-MNYTLDDVKEKFG 543 (637)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEE-E--------TT-E-EEEEEHHHHTT-TTCCHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCccCC-C--------CC-C-CCcCCHHHHhC-CCCCHHHHHHhhC
Confidence 9999999999999999999999999999999999999775 1 11 2 45679999999 9999999998 65
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHhh
Q psy13354 1234 GINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQA 1313 (1342)
Q Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~a 1313 (1342)
|+ .. +++++.+++||++||+|||+||+++|++++++|+++||+||||++|+|||+|+||||+++||.|||||
T Consensus 544 ~~-~~-------~~~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~e~~~~p~~~~y~~~~~ls~e~~~kl~~~~p~~~~~a 615 (637)
T 2zxi_A 544 YE-VP-------QHPYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKKFKPITVGQA 615 (637)
T ss_dssp CC-CC-------SSHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCBCCTTCCGGGCTTCCHHHHHHHHHHCCSBHHHH
T ss_pred Cc-cC-------CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhCCCCcCCCCcccCCCcCHHHHHHHHhcCCCCHHHH
Confidence 64 22 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHhc
Q psy13354 1314 SRISGVTPAALTLLLIYLKS 1333 (1342)
Q Consensus 1314 ~ri~Gv~p~~i~~l~~~~~~ 1333 (1342)
|||||||||||+.|++||++
T Consensus 616 ~ri~gv~p~~~~~l~~~~~~ 635 (637)
T 2zxi_A 616 SRIDGITPAAITALLVYLGK 635 (637)
T ss_dssp TTSTTCCHHHHHHHHHHTTC
T ss_pred hhCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999985
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-143 Score=1321.46 Aligned_cols=565 Identities=60% Similarity=0.979 Sum_probs=444.9
Q ss_pred hhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCCeE
Q psy13354 761 IHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKI 840 (1342)
Q Consensus 761 ~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~ 840 (1342)
..++++|++++||.|+..+|.+++||++||.+|||+||++|+|+||..|.+.|++.+++++|++|++++|++|..++++|
T Consensus 78 ~~~lv~ei~algg~~~~~~d~~gi~f~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V 157 (651)
T 3ces_A 78 KGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRV 157 (651)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBE
T ss_pred hHHHHHHHHHhccHHHHHhhhcccchhhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEE
Confidence 46899999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred EEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHcCCCccccccCCCcccccCccccccc
Q psy13354 841 LGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKM 920 (1342)
Q Consensus 841 ~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~~~~~ 920 (1342)
.||.+.+|..+.|+.||+|||||+++.+++|...++.|+.|...+.+++..|+++|+++.+++||||||++++||||+++
T Consensus 158 ~GV~t~dG~~I~Ad~VVLATGt~s~~~~i~G~~~~~~griGg~~a~eLA~~L~~lG~~v~~~~tgtpprid~~sId~~~~ 237 (651)
T 3ces_A 158 VGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVL 237 (651)
T ss_dssp EEEEETTSEEEEEEEEEECCSTTTCCEEECC-------------CCHHHHHHHTTTCCEEEECCEECCEEEGGGSCGGGS
T ss_pred EEEEECCCCEEECCEEEEcCCCCccCccccCcccCCCCCccchhhhHHHHHHHhcCCeEEEecCCCCCcccccccChHHh
Confidence 99999999899999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccCCCCccccccccCCCCCCcccccccCCCCCccc
Q psy13354 921 EEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHH 1000 (1342)
Q Consensus 921 ~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~k~~~~~~~~~~~ 1000 (1342)
..|+|| ..+.+|||++...-..+|++||+|+|++++|++++.|+|.+|+|+|.++++|||||||||+|++||++|++|+
T Consensus 238 ~~q~~d-~~~~~fsf~~~~~~~~~q~~c~~t~t~~~~~~ii~~~~~~~~~~~g~i~~~Gprycpsie~k~~rf~~k~~~~ 316 (651)
T 3ces_A 238 AQQHGD-NPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQ 316 (651)
T ss_dssp EEECCC-SSCCCSSTTCCGGGSCCCCCEEEEECCHHHHHHHHHTGGGC---------------CCHHHHHHHSCSSSCCE
T ss_pred eeeccC-CCCCCCccCCCCCCcccceecceeCccHHHHHHHHhcccccCcccccccccCCcccccccccccccCCCccce
Confidence 999999 9999999988742123599999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCc
Q psy13354 1001 IFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGT 1080 (1342)
Q Consensus 1001 ~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~ 1080 (1342)
+|||||++++.++|++|+||+||+++|.+++++|||||||+|+||||+||||||||++|++|||+|.++|||||||||||
T Consensus 317 i~lepeg~~~~~~y~~G~st~lp~~~q~~~~~~ipGle~a~i~r~Gy~ieyd~i~p~~L~~tle~k~~~gLf~AGqinGt 396 (651)
T 3ces_A 317 IFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGT 396 (651)
T ss_dssp EEEEESCTTCCEEEEETCCCCSCHHHHHHHHHTSTTCTTCCEEECCEEEEEEEECGGGBCTTSBBSSSBTEEECSGGGTC
T ss_pred eEeccccccCCeeeecCCCCCCCHHHHHHHHhhCCCccceEEEeccceeccCccchhhcCccccccCCCCeEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcCCCCccccccchhhhhhhccCccccccchhhhHh
Q psy13354 1081 TGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWK 1160 (1342)
Q Consensus 1081 ~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~~~epyrm~tsr~e~r~~lr~dna~~rl~~~~~~ 1160 (1342)
+|||||||||++||+|||++++|++|++|+|++|||||||||||||||+||||||||||||||+||+||||+||||+||+
T Consensus 397 tGYeEAaaqGl~AG~nAa~~~~~~~~~~~~r~~ayiG~liddl~t~g~~epyrm~tsrae~rl~lr~dnad~rl~~~~~~ 476 (651)
T 3ces_A 397 TGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRE 476 (651)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTCHHHHHHHHHHHHSSCCCGGGHHHHHTTCSTTCGGGHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHhcCCCCCCCChhhhhhhhHHHHHHHhcccchHHhhhhHHHHHHHhcccchhhhchHhHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccCcccccccCHHhhhcCCCCChhhHhcccccCCCCC
Q psy13354 1161 LGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNL 1240 (1342)
Q Consensus 1161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 1240 (1342)
+|||+++||+.|++|++.+++++++|++++++|.+.++..+.....+++....|++|+|+||+++|++|.++.|....
T Consensus 477 ~gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 554 (651)
T 3ces_A 477 LGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPA-- 554 (651)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHHHTCEECTTSTTHHHHHTTSSSCCSSCEEHHHHHTSTTCCHHHHTTSTTTCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCchHHHHHHHHHhcCCcccccCCHHHHhCCCCCCHHHHHhhcCCccC--
Confidence 999999999999999999999999999999988766665666555566777889999999999999999987765222
Q ss_pred cccccCc-HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHhhhcCCCC
Q psy13354 1241 YNTEIYQ-EDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGV 1319 (1342)
Q Consensus 1241 ~~~~~~~-~~~~~~~~~~~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~a~ri~Gv 1319 (1342)
++ +++.+++||++||+|||+||+++|++++++|+++||+||||++|+|||+|+||||+++||.|||||||||||
T Consensus 555 -----~~~~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~e~~~~p~~~~y~~~~~ls~e~~~kl~~~~p~~~~~a~ri~gv 629 (651)
T 3ces_A 555 -----LTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGV 629 (651)
T ss_dssp -----CSCHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred -----CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCCCcCCCCcccCCCcCHHHHHHHHhcCCCCHHHHhhCCCC
Confidence 67 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhc
Q psy13354 1320 TPAALTLLLIYLKS 1333 (1342)
Q Consensus 1320 ~p~~i~~l~~~~~~ 1333 (1342)
|||||+.|++||++
T Consensus 630 ~p~~~~~l~~~~~~ 643 (651)
T 3ces_A 630 TPAAISILLVWLKK 643 (651)
T ss_dssp --------------
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999985
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-137 Score=1275.57 Aligned_cols=564 Identities=44% Similarity=0.702 Sum_probs=529.2
Q ss_pred hhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCCeE
Q psy13354 761 IHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKI 840 (1342)
Q Consensus 761 ~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~ 840 (1342)
..++++|+++++|.|++.+|.+++||++||.+|||+||++|+|+||..|.+.|++.++++||++|++++|++|..++++|
T Consensus 71 ~~~lv~el~al~g~~~~~~d~~gi~f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V 150 (641)
T 3cp8_A 71 KGQITREIDALGGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKF 150 (641)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHEEEEEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEE
T ss_pred HHHHHHHHHhcccHHHHHHHhcCCchhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCC-CCcchHHHHHHHHHcCCCccccccCCCcccccCcccccc
Q psy13354 841 LGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRF-GDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSK 919 (1342)
Q Consensus 841 ~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~-g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~~~~ 919 (1342)
.||.+.+|..+.|+.||+|||||++|.+|+|...+++|++ |+.++.+++..|.++|+++.+++||||||++++||||+.
T Consensus 151 ~GV~t~~G~~i~Ad~VVLATG~~s~~~i~~G~~~~~~g~~vG~~~a~~la~~L~~~G~kv~~l~tGtpprv~~~sid~~~ 230 (641)
T 3cp8_A 151 SSVTVRSGRAIQAKAAILACGTFLNGLIHIGMDHFPGGRSTAEPPVEGLTESLASLGFSFGRLKTGTPPRIDSRSVDYTI 230 (641)
T ss_dssp EEEEETTSCEEEEEEEEECCTTCBTCEEEETTEEEECSSSTTSCCBCSHHHHHHHTTCCEEEEEEEECCEEEGGGSCTTT
T ss_pred EEEEECCCcEEEeCEEEECcCCCCCccceeeeeeeccccccCCchhhhhHHHHHhCCceEEeecCCCCcccCcccCChhh
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccCCCCccccccccCCCCCCcccccccCCCCCcc
Q psy13354 920 MEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSH 999 (1342)
Q Consensus 920 ~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~k~~~~~~~~~~ 999 (1342)
++.|+|| ..+.+|||+++.....+|++||+|+|+.++|.+|+.|+|.+|+|+|.++|.|||||||||+|++||++|++|
T Consensus 231 ~e~~~gd-~~~~~fsf~~~~~p~~~~~~C~~T~T~~~~h~II~~~~~~~p~~~g~isG~G~RycPsIedki~rf~d~~~~ 309 (641)
T 3cp8_A 231 VTEQPGD-VDPVPFSFSSTSVANRNLVSCYLTKTTEKTHDILRTGFDRSPLFTGKVQGVGPRYCPSIEDKISRFPDKSSH 309 (641)
T ss_dssp SEEECCC-SSCCCSSSSCCCCGGGCCCCEEEEECCHHHHHHHHTTTTTCTTCCC---------CCCSHHHHHHCCSCSCC
T ss_pred hhccccc-ccccccccccCCCCcccccccccccCchhhhhHHhcCccccCCCCCcccCcCCccCcchhhhheeccCCCcc
Confidence 9999999 888999998763212359999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeecccccC
Q psy13354 1000 HIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQING 1079 (1342)
Q Consensus 1000 ~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g 1079 (1342)
|+|||||++++.++|+||+||+||+++|.+++++|||||+|+|+||||++|||||||++|++|||||.++||||||||||
T Consensus 310 ~~~lepe~~~~~~~~~~g~st~l~~~~q~~~~~~i~gle~a~~~~~G~~~~y~~i~p~~l~~tle~k~~~gLf~AGqi~g 389 (641)
T 3cp8_A 310 HIFLEPEGTDTVEMYVNGFSTSLPEDIQIAGLRSIPGLEEAKMIRPGYAIEYDFFHPWQIRSTMETRPVENLFFAGQING 389 (641)
T ss_dssp EEEEEESSTTCCEEEEETCCCCSCHHHHHHHHTTSTTCTTCCEEECCEEEEEEEECGGGBCTTSBBSSSBTEEECSGGGT
T ss_pred eEEEecCCCCCCceecCCccccccHHHHHHHHhcCcchhhceEecceeeecceEECHHHcCCcccccCcCCEEEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcCCCCccccccchhhhhhhccCccccccchhhhH
Q psy13354 1080 TTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGW 1159 (1342)
Q Consensus 1080 ~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~~~epyrm~tsr~e~r~~lr~dna~~rl~~~~~ 1159 (1342)
|+||+||||||++||+|||++++|++|++|+|++||||||||||||||++||||||||||||||+||+||||.||||+|+
T Consensus 390 ~~Gy~eA~a~G~~AG~naa~~~~~~~~~~~~r~~~y~g~l~~~l~~~g~~epyrm~tsrae~rl~lr~dna~~~~~~~~~ 469 (641)
T 3cp8_A 390 TSGYEEAAAQGLMAGINAVRKILGKELIVLGRDQAYIGVLIDDLITKETKEPYRMFTSSAEHRLILRHDNADLRLRKIGY 469 (641)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCHHHHHHHHHHHCCCSSCBCTTTCCCSCCGGGCGGGHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhhHHHHHHHHHHhcCccchhhhccchHhhhhhhcccCcccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccCcccccccCHHhhhcCCCCChhhHhcccccC---
Q psy13354 1160 KLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN--- 1236 (1342)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~--- 1236 (1342)
++|||+++||+.|++|++.+++++++|++++++|..| +..+.....+++....|++|+|+||+++|++|.++.|+.
T Consensus 470 ~~gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 548 (641)
T 3cp8_A 470 DCNLVSSDDLHRTESIIKRVQHCLEVMKTAKVTPAEI-NTLLMNKGLQELKTPARALSLIKRPGISLQDILEHSLSVRSA 548 (641)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHTCCCCCSCCCCHHHHSSSSCCHHHHHTTCHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhcCccChHHH-HHHHHhhcCCccccccCHHHHhCCCCCCHHHHHhhCcccccc
Confidence 9999999999999999999999999999999988844 445554455567778899999999999999999876642
Q ss_pred -CCCCcccccC--cHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHhh
Q psy13354 1237 -GKNLYNTEIY--QEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQA 1313 (1342)
Q Consensus 1237 -~~~~~~~~~~--~~~~~~~~~~~~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~a 1313 (1342)
.. + ++++.+++||++||+|||+||+++|++++++|+++||+||||++|+|||+|+||||+++||.|||||
T Consensus 549 ~~~-------~~~~~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~e~~~~p~~~~y~~~~~ls~e~~~kl~~~~p~~~~~a 621 (641)
T 3cp8_A 549 AEE-------LCNDPRVAEQVQIEIKYEGYIKREQLVADRIARLDSLHIPDNFNYDSLNSLSSEGREKLLKHRPATIGQA 621 (641)
T ss_dssp CCH-------HHHCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCSSSCTTCCSSCCTTHHHHHHHHCCSSHHHH
T ss_pred ccc-------cCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcCCCCcCCCCcccCCCcCHHHHHHHHhcCCCCHHHH
Confidence 11 4 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHhc
Q psy13354 1314 SRISGVTPAALTLLLIYLKS 1333 (1342)
Q Consensus 1314 ~ri~Gv~p~~i~~l~~~~~~ 1333 (1342)
|||||||||||+.|++||++
T Consensus 622 ~ri~gv~p~~~~~l~~~~~~ 641 (641)
T 3cp8_A 622 SRILGVSPSDVSILMIRLGR 641 (641)
T ss_dssp TTSTTSCHHHHHHHHTTC--
T ss_pred hhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999973
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-72 Score=641.29 Aligned_cols=294 Identities=27% Similarity=0.344 Sum_probs=262.5
Q ss_pred chhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCC
Q psy13354 759 NLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTN 838 (1342)
Q Consensus 759 ~~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~ 838 (1342)
+..++|++|||+|||.|++++|.++| ||+|++ |+||..|++.|++.|+++|||+|.|++|++|.
T Consensus 62 ~akGlL~~EIdaLGg~m~~~aD~~~i----------pAg~al--~vDR~~f~~~~~~~le~~pni~l~q~eV~~l~---- 125 (443)
T 3g5s_A 62 NAKGLLQAEMRRAGSLVMEAADLARV----------PAGGAL--AVDREEFSGYITERLTGHPLLEVVREEVREIP---- 125 (443)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHSEE----------CCTTEE--EECHHHHHHHHHHHHHTCTTEEEECSCCCSCC----
T ss_pred cchhHHHHHHHHcCChHhhhhhhcCC----------CCCccc--cCCcHHHHHHHHHHHHcCCCeEEEhhhhhhhc----
Confidence 57789999999999999999999999 899997 79999999999999999999999999999995
Q ss_pred eEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHc-CCCccccccCCCcccccCcccc
Q psy13354 839 KILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKEL-QLSHGRLKTGTPPRIDKRTIDF 917 (1342)
Q Consensus 839 ~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~-g~~~~~~~~~~~~r~~~~si~~ 917 (1342)
+++||||||| .+|.+|+++|+++ |.+..||||||||||+++||||
T Consensus 126 --------------~~~vIiatG~--------------------~~s~~Ls~~L~~~tG~~~~~f~~~tpPrv~~~SId~ 171 (443)
T 3g5s_A 126 --------------PGITVLATGP--------------------LTSEALAEALKRRFGDHFLAYYDAASPIVLYESIDL 171 (443)
T ss_dssp --------------SSSEEECCCT--------------------TCCHHHHHHHHHHHCGGGEEEEEEECCEEEGGGSCG
T ss_pred --------------CCCEEEeCCC--------------------CccHHHHHHHHHhhCCCceeeccCCCCEeeCCcccH
Confidence 4799999995 4799999999996 9999999999999999999999
Q ss_pred ccceeecCCCCCCCcccccCCCCCCCCccccchhhcch--hHHH------HHHhhcccCCCCccccccccCCCCCCccc-
Q psy13354 918 SKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNE--KTHN------IIRSEFKNSPIFSGKIESIGPRYCPSIED- 988 (1342)
Q Consensus 918 ~~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~--~~~~------~i~~~~~~~p~~~~~~~~~g~r~~~s~~~- 988 (1342)
++++.|++. .. + .++++|++++++. .++. +++.|++.+|+|+| |||||+
T Consensus 172 ~~~~~q~~~-~~--~----------~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~f~G---------CpsIE~~ 229 (443)
T 3g5s_A 172 TKCFRAGRY-GQ--S----------ADYLNCPMTEEEYRRFHQALLEAQRHTPHDWEKLEFFEA---------CVPVEEL 229 (443)
T ss_dssp GGCEECCCC------------------CEEEEECHHHHHHHHHHHHHCCBCCCC-------CTT---------CCCHHHH
T ss_pred HHhhcccCC-CC--C----------cccCCCCCChhHHHHHHHHHhccchhhhhccccCcccCC---------CcCHHHH
Confidence 999999986 32 1 2378898887542 2333 45667999999987 999999
Q ss_pred -----ccccCCC-------------CCccceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEE
Q psy13354 989 -----KVYRFPK-------------KKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIE 1050 (1342)
Q Consensus 989 -----k~~~~~~-------------~~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~ 1050 (1342)
|++||.+ +++|+||||||+++++++|+|||||+||+++|++++|+|||||||+|+||||+||
T Consensus 230 a~rg~k~~rF~p~kp~gl~d~~~~~~p~a~v~LepE~~~~~~~y~~GfsTsLp~~~Q~~~~r~IpGLE~a~~~r~G~~~e 309 (443)
T 3g5s_A 230 ARRGYQTLLFGPMKPVGLVDPRTGKEPFAVVQLRQEDKAGRMWSLVGFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHR 309 (443)
T ss_dssp HHTCTTHHHHTTTCCTTCCBTTTTBCCSEEEEEEECSTTSCEEEETTCCCCBCHHHHHHHHTTSTTCTTCCEEECCEEEE
T ss_pred hhcCCceeecCCCccccCCCcccCCccceEEEEeecCCCCCEEeCCceecCCCHHHHHHHHhcCcChhhCeeeeCcEeec
Confidence 7888854 2356999999999999999999999999999999999999999999999999999
Q ss_pred eeeeC-ccCccccccccCcCCeeecccccCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhh
Q psy13354 1051 YDYFN-PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLIT 1125 (1342)
Q Consensus 1051 ~~~i~-p~~l~~tlesk~~~gL~~aGqi~g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~ 1125 (1342)
||||| |++|++|||+|.++|||||||||||+|||||||||++||+|||++++|++|++|+|+ +||||||||||+
T Consensus 310 y~~i~sP~~L~~tle~k~~~~Lf~AGqi~G~~Gy~eAaa~Gl~AG~naa~~~~g~~p~~l~r~-~yiGvLiddl~~ 384 (443)
T 3g5s_A 310 NTYLNAPRLLGETLEFREAEGLYAAGVLAGVEGYLESAATGFLAGLNAARKALGLPPVAPPEE-SMLGGLVRYLAT 384 (443)
T ss_dssp EEEECHHHHBCTTSEETTEEEEEECGGGGTBCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCTT-SHHHHHHHHHHH
T ss_pred CceecChhHhChhceecCCCCEEECccccccHHHHHHHHhHHHHHHHHHHHhcCCCCCCCChh-hhhhHHHHHhhc
Confidence 99999 999999999999999999999999999999999999999999999999999999996 899999999999
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=406.58 Aligned_cols=375 Identities=47% Similarity=0.795 Sum_probs=323.0
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
++.++..||.+++.+.++..|+.+.|.|.+|||+.|+.|++++...+.++|.+|||+.+||++++..+++|..+.++.++
T Consensus 32 ~~~l~~~Dpei~~~i~~E~~RQ~~~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~ 111 (490)
T 3ou5_A 32 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALE 111 (490)
T ss_dssp CCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHH
T ss_pred ccchhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCc----eEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-----HHhhhCCceeEEEEecCC-CCCCCC
Q psy13354 85 IFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-----MMLNMSGKWFNSICYGLN-KKEKID 154 (1342)
Q Consensus 85 ~~g~~~~----vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-----~~~~~~g~~~~~v~~~~~-~~~~id 154 (1342)
+||++++ .+.+.||+.||.+++.++++|||+|+.+++.+++|.+++ ..+...|..++.++++++ +++.+|
T Consensus 112 lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~ID 191 (490)
T 3ou5_A 112 AFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLID 191 (490)
T ss_dssp HTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEEC
T ss_pred HhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCccc
Confidence 9999965 688889999999999999999999999999999999987 345667777888888887 678999
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCC
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp 234 (1342)
+|.+++.+.+++|++|+++.+.|+...|++++.++|++.|++|++|.||..|.+.++.+++|++.+|++++|.||+|.||
T Consensus 192 yd~~~~~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTLrGP 271 (490)
T 3ou5_A 192 YNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 271 (490)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTTCSC
T ss_pred HHHHHHHHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEec---------------hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 235 RGGFILMKK---------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 235 ~GG~iv~~~---------------~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
.||+|++++ ++.+.+....+|+..++|.....+|.+.++.+.+.+.++++.+++.+|++.|.+.|
T Consensus 272 rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L 351 (490)
T 3ou5_A 272 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADAL 351 (490)
T ss_dssp SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 999999987 57888988889999999999999999999999888899999999999999999999
Q ss_pred HhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 300 DQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 300 ~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
.+.|++++++++++|.+++++.+.+.+...+..+|++.||.+....+|+. ..++-+++||+|+.+.|++++.++++..+
T Consensus 352 ~~~G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D-~sp~~~SGiRiGTpa~TtRG~~e~dm~~I 430 (490)
T 3ou5_A 352 LERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD-RSAITPGGLRLGAPALTSRQFREDDFRRV 430 (490)
T ss_dssp HHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTC-CCSSSCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred HhCCCeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCC-CCCCCCCeeEECCHHHHhCCCCHHHHHHH
Confidence 99999999999999999999988888899999999999999999888987 45667789999999999999999998665
Q ss_pred H
Q psy13354 380 V 380 (1342)
Q Consensus 380 ~ 380 (1342)
+
T Consensus 431 A 431 (490)
T 3ou5_A 431 V 431 (490)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=402.39 Aligned_cols=359 Identities=45% Similarity=0.774 Sum_probs=335.7
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
.+|++||+|..|++++||+++++.|.+++..++.+|+|||+||+|+|||++++.+++.++|.. .....+|+.|.+
T Consensus 4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~-----~~~~~~~~~~~~ 78 (373)
T 1jr3_A 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-----GITATPCGVCDN 78 (373)
T ss_dssp CCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTT-----CSCSSCCSSSHH
T ss_pred HHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCC-----CCCCCCCcccHH
Confidence 478999999999999999999999999999999999999999999999999999999999753 334578999999
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE 538 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~ 538 (1342)
|..+..+.++++.+++.+...+++.++++++.+...|.+++++||+|||+|.++.+..+.|+++++++++++++|+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred HHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 99999999999999988766677889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHH
Q psy13354 539 PQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618 (1342)
Q Consensus 539 ~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~ 618 (1342)
++++.+++.+||..++|.+++.+++..|+..+++++|+.+++++++.+++.++||+|.+.++++++..++.+.||.++|+
T Consensus 159 ~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v~ 238 (373)
T 1jr3_A 159 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 (373)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHHH
T ss_pred hHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc-ccCCchhHHHHHHHHh
Q psy13354 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI-LIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 619 ~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~-~~~~~~~~~~~~~~a~ 697 (1342)
++++......+|++++++..++...++.+++.+...|++|..+++.|.++||+++.++...+. ...+++..+.+.++++
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~a~ 318 (373)
T 1jr3_A 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 (373)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCccccccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875443 2345667788999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLH 742 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~ 742 (1342)
+||.++|.++++.+.++|.++|++.|+++.+|+++++++.+.|..
T Consensus 319 ~~~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~~~~~~ 363 (373)
T 1jr3_A 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 (373)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTCSSS
T ss_pred hCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999988999999999999999987654
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=376.99 Aligned_cols=375 Identities=47% Similarity=0.792 Sum_probs=295.0
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
+..++..||.+++.+.++..|+.+.|.|.+++|+++|.|++|+...+.+.|..|++++++|++++..+++|+.+++++++
T Consensus 32 ~~~l~~~d~~~~~~~~~e~~rq~~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~ 111 (490)
T 2a7v_A 32 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALE 111 (490)
T ss_dssp CCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHH
T ss_pred cchhhhcCHHHHHHHHHHHHHHHcCceEECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999988888999889999999
Q ss_pred HhCCCC----ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-----HhhhCCceeEEEEecCC-CCCCCC
Q psy13354 85 IFNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-----MLNMSGKWFNSICYGLN-KKEKID 154 (1342)
Q Consensus 85 ~~g~~~----~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-----~~~~~g~~~~~v~~~~~-~~~~id 154 (1342)
++|.+. +.++++|||.|+..++.++++|||+|++..+.|++|++++. .+...|..+.+++++++ +++.+|
T Consensus 112 l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD 191 (490)
T 2a7v_A 112 AFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLID 191 (490)
T ss_dssp HTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBC
T ss_pred HcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcC
Confidence 999986 56676799999999999999999999998888887766543 23455665667777766 578999
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCC
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp 234 (1342)
++++++++.+.++++++++.++++...|+++|+++|++||++|++|++|..|..+.+..+.++..+|++++|+||+|+||
T Consensus 192 ~d~le~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp 271 (490)
T 2a7v_A 192 YNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 271 (490)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSC
T ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccc
Confidence 99999999876788999888889888899999999999999999999999888777766666667899999999999889
Q ss_pred CeeEEEEech---------------hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 235 RGGFILMKKK---------------YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 235 ~GG~iv~~~~---------------l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
.||+++++++ +.+.++...+++..+++..+..+|++.++.+...+.++++.+++.+|++++.+.|
T Consensus 272 ~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L 351 (490)
T 2a7v_A 272 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADAL 351 (490)
T ss_dssp SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999874 5677777667777788888888888888887765567888999999999999999
Q ss_pred HhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 300 DQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 300 ~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
.+.|+++..++.+++++|++++..+.+...+..+|++.||.+....+|+.. .++.++++|+++.+.++++++++|+..+
T Consensus 352 ~~~G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~-~p~~~~~iRig~~a~t~~g~~~~d~~~~ 430 (490)
T 2a7v_A 352 LERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRV 430 (490)
T ss_dssp HHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred HHcCcEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCC-CCCCCCceEecccccccCCCCHHHHHHH
Confidence 999999876556789999999877667777888888899999988777763 3555788999999999999999998664
Q ss_pred H
Q psy13354 380 V 380 (1342)
Q Consensus 380 ~ 380 (1342)
+
T Consensus 431 ~ 431 (490)
T 2a7v_A 431 V 431 (490)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=353.26 Aligned_cols=309 Identities=11% Similarity=0.064 Sum_probs=276.4
Q ss_pred HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcC
Q psy13354 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG 480 (1342)
Q Consensus 401 ~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~ 480 (1342)
+.+.+.++ ++++|+||||||+|+||+++++.+++.+.|.+.. + .+.++++.
T Consensus 7 ~~l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~--------~---------------~~~~~~~~----- 57 (343)
T 1jr3_D 7 EQLRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE--------E---------------HHTFSIDP----- 57 (343)
T ss_dssp TTHHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC--------E---------------EEEEECCT-----
T ss_pred HHHHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC--------e---------------eEEEEecC-----
Confidence 35667777 7899999999999999999999999998753100 0 12334442
Q ss_pred HHHHHHHHHHHhhcCccCCceEEEeccCcc-CCHHHHHHHHHhhcCCCCcEEEEEEeCCC------CCChHHHhccEEEE
Q psy13354 481 INEMAQLLEQTIYAPINARYKIYVIDEVHM-LTHHAFNAMLKTLEEPPKYIKFILATTEP------QKIPITVLSRCIQF 553 (1342)
Q Consensus 481 ~~~i~~ii~~~~~~p~~~~~rvviIDE~~~-L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~------~kl~~~L~sR~~~i 553 (1342)
..+++++++.+.+.|+++++|||+|||+|. ++++.+++|++++|+||+++++|+++++. .++.++|.|||.++
T Consensus 58 ~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~ 137 (343)
T 1jr3_D 58 NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQV 137 (343)
T ss_dssp TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEE
T ss_pred CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEE
Confidence 157899999999999999999999999999 99999999999999999999999999874 35788999999999
Q ss_pred EEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc-CCCCCHHHHHHHhccCcHHHHHHH
Q psy13354 554 NLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS-SEKITLNSMQEMLSIIDQKYLIQI 632 (1342)
Q Consensus 554 ~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~-~~~It~e~V~~~v~~~~~~~if~l 632 (1342)
+|.+++.+++.+|+.++++++|+.++++++++|++.++||++.+.++|+|+..|. ++.||.++|+++++...+.++|++
T Consensus 138 ~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l 217 (343)
T 1jr3_D 138 TCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHW 217 (343)
T ss_dssp EECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHH
T ss_pred EeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999986 456999999999999999999999
Q ss_pred HHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc---------cCCchhHHHHHHHHhcCCHHH
Q psy13354 633 LDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL---------IKDSPNYNEIIQLSKKFNIEQ 703 (1342)
Q Consensus 633 ~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~---------~~~~~~~~~~~~~a~~~s~~~ 703 (1342)
++++..+|...|+.++++|...|++|..+++.|.++||+++.++...+.| ..+++..+.+.+++++||.++
T Consensus 218 ~~ai~~~d~~~al~~l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~~g~~~~i~~~l~i~~~~~~~~~~~~~~~s~~~ 297 (343)
T 1jr3_D 218 VDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQ 297 (343)
T ss_dssp HHHHTTSCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHHHHHHHHHSCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999865544 345566777889999999999
Q ss_pred HHHHHHHHHHHHHhhccC--CChhHHHHHHHHHhHcc
Q psy13354 704 IQLFYQISIHGRNELELA--PDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 704 L~~~l~~l~~~d~~lK~~--~~~~~~le~~ll~l~~~ 738 (1342)
|.++++.|.++|.++|++ .++|..+|.+++++|..
T Consensus 298 L~~~l~~l~~~d~~lK~~~~~~~~~~le~l~l~l~~~ 334 (343)
T 1jr3_D 298 LRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHK 334 (343)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Confidence 999999999999999975 58999999999999873
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=338.05 Aligned_cols=311 Identities=19% Similarity=0.280 Sum_probs=282.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|++||+|..|++++||+++++.|...++.|+++| |+|+||+|+|||++++.+++.+.|..
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~---------------- 74 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYGKN---------------- 74 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTS----------------
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCC----------------
Confidence 3589999999999999999999999999999999998 99999999999999999999997521
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHh--hcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI--YAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~--~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
....+.+++.++..+++.+++.+..+. ..++.++++|++|||+|.++.+.+++|++++|+|+.++.+|++
T Consensus 75 --------~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 75 --------YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp --------HHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred --------ccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 113577888877677888888877665 3456677999999999999999999999999999999999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCC----C
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE----K 611 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~----~ 611 (1342)
+|.+.++.++|+|||..++|.+++.+++.+|+.++++++++.+++++++.+++.++|++|+++++++++..+... .
T Consensus 147 ~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~ 226 (340)
T 1sxj_C 147 ANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDE 226 (340)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCC
T ss_pred ecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988766543 6
Q ss_pred CCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHH
Q psy13354 612 ITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYN 690 (1342)
Q Consensus 612 It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~-~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~ 690 (1342)
||.++|.++++......++++++++..++...|+.++.++.. .|++|..++..|.++++.+
T Consensus 227 it~~~v~~~~~~~~~~~i~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~------------------ 288 (340)
T 1sxj_C 227 ISDDVIYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY------------------ 288 (340)
T ss_dssp BCHHHHHHHTTCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS------------------
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------------------
Confidence 999999999999999999999999999999999999999998 9999999999988888653
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 691 EIIQLSKKFN-IEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 691 ~~~~~a~~~s-~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
.++ ..++..++..+.++|..||.+.++.+.+|.+++++|..
T Consensus 289 -------~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~l~~~l~~~ 330 (340)
T 1sxj_C 289 -------ELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKAS 330 (340)
T ss_dssp -------CCSSHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred -------cCCcHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 356 78899999999999999999899999999999999875
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-35 Score=341.16 Aligned_cols=313 Identities=23% Similarity=0.252 Sum_probs=265.0
Q ss_pred cccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEE
Q psy13354 393 LIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIE 472 (1342)
Q Consensus 393 lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~ 472 (1342)
++-|+.+++.|.+++++|+++|+|||+||+|+|||++|+.+++.++|... ....+|+.|++|..+..+.|+|+..
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~-----~~~~~c~~c~~c~~~~~~~~~d~~~ 78 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQP-----QGHKSCGHCRGCQLMQAGTHPDYYT 78 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSC-----BTTBCCSCSHHHHHHHHTCCTTEEE
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCC-----CCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 34578889999999999999999999999999999999999999998642 2247899999999999999999999
Q ss_pred EccC---CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhcc
Q psy13354 473 MDAA---STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSR 549 (1342)
Q Consensus 473 i~~~---~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR 549 (1342)
+++. ...++++++++++.+...|++++++|+||||+|.|+.+++|+|++++|+|+++++||++++++++++++|+||
T Consensus 79 ~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR 158 (334)
T 1a5t_A 79 LAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR 158 (334)
T ss_dssp ECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred EeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc
Confidence 9875 5678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHH
Q psy13354 550 CIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYL 629 (1342)
Q Consensus 550 ~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~i 629 (1342)
|..++|++++.+++.+||.+++ .+++++++.+++.++|++|.+++++++.... . ...+
T Consensus 159 c~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~-~----------------~~~~ 216 (334)
T 1a5t_A 159 CRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQ-A----------------RETL 216 (334)
T ss_dssp SEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHH-H----------------HHHH
T ss_pred ceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHH-H----------------HHHH
Confidence 9999999999999999998764 6789999999999999999999999875421 1 1122
Q ss_pred HHHHHHHHc-cChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHH
Q psy13354 630 IQILDALAE-QDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFY 708 (1342)
Q Consensus 630 f~l~dal~~-~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l 708 (1342)
++.+..+.. .+. +++++.+. ++++..++..|.++||++++++... .+..+.+..+.+.+++++|+.+++.+++
T Consensus 217 ~~~~~~~~~~~~~---~~~~~~l~--~~~~~~~l~~l~~~~rdll~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~l~~~~ 290 (334)
T 1a5t_A 217 CQALAYSVPSGDW---YSLLAALN--HEQAPARLHWLATLLMDALKRHHGA-AQVTNVDVPGLVAELANHLSPSRLQAIL 290 (334)
T ss_dssp HHHHHHHHHHCCC---GGGHHHHC--STTHHHHHHHHHHHHHHHTCC-------CCCTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhChHH---HHHHHHHh--cccHHHHHHHHHHHHHHHHHhccCC-ccccCHHHHHHHHHHHHhCCHHHHHHHH
Confidence 333333322 221 12333332 5688999999999999999887653 3556677788899999999999999999
Q ss_pred HHHHHHHHhhc--cCCChhHHHHHHHHHhHcc
Q psy13354 709 QISIHGRNELE--LAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 709 ~~l~~~d~~lK--~~~~~~~~le~~ll~l~~~ 738 (1342)
+.+.+++..+| ++.|+++.+|.++++++..
T Consensus 291 ~~l~~~~~~l~~~~~~n~~l~le~ll~~l~~~ 322 (334)
T 1a5t_A 291 GDVCHIREQLMSVTGINRELLITDLLLRIEHY 322 (334)
T ss_dssp HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999 7889999999999999853
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=332.83 Aligned_cols=310 Identities=22% Similarity=0.310 Sum_probs=277.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|++||+|..|++++||+.+++.+.+.+..++.++ |||+||+|+|||++++.+++.+.+..
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~---------------- 66 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGEN---------------- 66 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCC-EEEESSSSSSHHHHHHHHHHHHHTTC----------------
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCe-EEEECcCCcCHHHHHHHHHHHhcCCc----------------
Confidence 3579999999999999999999999999999998888 99999999999999999999987421
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHh-hcCcc-CCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI-YAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~-~~p~~-~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
....+++++++...+.+.+++.+..+. ..|+. +++++|+|||+|.++.+.++.|+++++++++++++|++
T Consensus 67 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~ 138 (319)
T 2chq_A 67 --------WRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILS 138 (319)
T ss_dssp --------HHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEE
T ss_pred --------ccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 012466777766556566666655544 55665 66899999999999999999999999999999999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHH
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e 615 (1342)
++.++++.+++.+||..++|.+++.+++.+|+..+++++|+.+++++++.+++.++||+|.+.++++++..+ .+.||.+
T Consensus 139 ~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~-~~~i~~~ 217 (319)
T 2chq_A 139 CNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI-GEVVDAD 217 (319)
T ss_dssp ESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS-SSCBCHH
T ss_pred eCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765 5679999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHH
Q psy13354 616 SMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQ 694 (1342)
Q Consensus 616 ~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~-~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~ 694 (1342)
+|.++++.....++|++++++..++...+++++.+++. .|.+|..++..+.++++.+
T Consensus 218 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l---------------------- 275 (319)
T 2chq_A 218 TIYQITATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISM---------------------- 275 (319)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTS----------------------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------------------
Confidence 99999999999999999999999999999999999998 8999999999988887653
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 695 LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 695 ~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+++.+++.+++..+.++|..+|++.+++..+|.+++++|.+
T Consensus 276 ---~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~ 316 (319)
T 2chq_A 276 ---PIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTL 316 (319)
T ss_dssp ---CSCTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 48889999999999999999999999999999999999875
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=342.43 Aligned_cols=374 Identities=47% Similarity=0.795 Sum_probs=304.5
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
++++..+|.++..+..+..++.+.|.|.+++|++++.+++++.+.+.+.|..|++++++|+++...+++++.++++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~ 102 (483)
T 1rv3_A 23 QPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQA 102 (483)
T ss_dssp SCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHHHHHHHHHHhhcCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHH
Confidence 46777889999999888888888899999999999999999999998878778898889999999999999999999999
Q ss_pred hCCCC----ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-----hhhCCceeEEEEecCC-CCCCCCH
Q psy13354 86 FNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-----LNMSGKWFNSICYGLN-KKEKIDY 155 (1342)
Q Consensus 86 ~g~~~----~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-----~~~~g~~~~~v~~~~~-~~~~id~ 155 (1342)
+|.+. +.+.+++|++|+.+++.++++|||+|+++++.|+++..++.. +...|..+..++++++ ++|.+|+
T Consensus 103 ~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~ 182 (483)
T 1rv3_A 103 YGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDY 182 (483)
T ss_dssp TTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCH
T ss_pred hCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCH
Confidence 99884 324444888999999999999999999999998888765532 2333434678877766 6789999
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCC
Q psy13354 156 KKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235 (1342)
Q Consensus 156 e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~ 235 (1342)
+++++++++.++++|++++++++...|+++|+++|+++|++|++|++|..|....+.+..++..+|++++|+||+|+||.
T Consensus 183 d~le~~i~~~~tklIi~~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gpr 262 (483)
T 1rv3_A 183 DRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCR 262 (483)
T ss_dssp HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCS
T ss_pred HHHHHHHhhcCCcEEEEeCCcCCCcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCC
Confidence 99999998556777777777777667999999999999999999999998888776666666568999999999999999
Q ss_pred eeEEEEech---------------hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 236 GGFILMKKK---------------YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 236 GG~iv~~~~---------------l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
||+++++++ +.+.+.....++..++++.+..++++.++......+++++.+++.++++++.+.|.
T Consensus 263 gG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 342 (483)
T 1rv3_A 263 AGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALV 342 (483)
T ss_dssp CEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999984 44455444445556778788888888888777655788899999999999999999
Q ss_pred hCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 301 QRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 301 ~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
+.|+++..++..++++|+++...+.+.+.+..+|++.||.+.....|+.. .++..+++|++++..+++++.++++.+++
T Consensus 343 ~~g~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~-~~~~~~~iRis~~~~~t~g~~~edi~~~~ 421 (483)
T 1rv3_A 343 ELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDK-SALRPSGLRLGTPALTSRGLLEKDFQKVA 421 (483)
T ss_dssp HTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCS-CTTSCCEEEEECHHHHHTTCCHHHHHHHH
T ss_pred hcCCEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCC-cCCCCceEEeecCCcccCCCCHHHHHHHH
Confidence 99999876544568899999765556666777888889999965555442 23446789999999999898888876533
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-33 Score=323.59 Aligned_cols=310 Identities=25% Similarity=0.326 Sum_probs=276.6
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|++||+|.+|++++||+++++.|.+.+..++.+| +||+||+|+|||++++.+++.+.+..
T Consensus 12 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~l~~~l~~~~---------------- 74 (327)
T 1iqp_A 12 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGEN---------------- 74 (327)
T ss_dssp TSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCE-EEEESCTTSSHHHHHHHHHHHHHGGG----------------
T ss_pred CCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCc----------------
Confidence 4589999999999999999999999999999998887 99999999999999999999987421
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHH-hhcCcc-CCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQT-IYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~-~~~p~~-~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
....++++++++..+.+.+++.+... ...|++ +++++|+|||++.++.+.+++|++++++++.++++|++
T Consensus 75 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~ 146 (327)
T 1iqp_A 75 --------WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILS 146 (327)
T ss_dssp --------HHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred --------ccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 01246777776544445555554443 456666 77899999999999999999999999999999999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHH
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e 615 (1342)
++.++++.+++.+||..+.|.+++.+++..|+..+++++|+.+++++++.+++.++||+|.+.++++++..+. ..||.+
T Consensus 147 ~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~-~~i~~~ 225 (327)
T 1iqp_A 147 CNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALD-KKITDE 225 (327)
T ss_dssp ESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SEECHH
T ss_pred eCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC-CCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877553 479999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHH
Q psy13354 616 SMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIE-IYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQ 694 (1342)
Q Consensus 616 ~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~-~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~ 694 (1342)
+|.++++.....+++++++++..++...++..+++++ ..|.+|..++..|.++++.+
T Consensus 226 ~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~---------------------- 283 (327)
T 1iqp_A 226 NVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL---------------------- 283 (327)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGS----------------------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------------------
Confidence 9999999999999999999999999999999999998 88999999999998876531
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 695 LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 695 ~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+|+.+++.+++..+.++|..+|++.|+++.+|.+++++|.+
T Consensus 284 ---~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~ 324 (327)
T 1iqp_A 284 ---PIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLI 324 (327)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999864
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=330.19 Aligned_cols=374 Identities=50% Similarity=0.865 Sum_probs=300.3
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
.+.+...+|.+++.+..+..++.+.|.+.+++|+++|.+++++.+.+.+.|..++++++++.+......+++.+++++++
T Consensus 23 ~~~l~~~~~~i~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~ 102 (447)
T 3h7f_A 23 SAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKA 102 (447)
T ss_dssp GCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhCceeEecCCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHH
Confidence 45677889999999988777777889999999999999999999988777877888888888888777777766689999
Q ss_pred HhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHH
Q psy13354 85 IFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAK 163 (1342)
Q Consensus 85 ~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~ 163 (1342)
++|.+.+.++++||++|+..++.++++|||+|+++.+.+++++..+......|..+..++++.+ +++.+|++++++++.
T Consensus 103 ~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~ 182 (447)
T 3h7f_A 103 LFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATAL 182 (447)
T ss_dssp HHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHH
T ss_pred HcCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHH
Confidence 9999977774559999999999999999999999888877755444333333444566777766 567899999999997
Q ss_pred hcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEec
Q psy13354 164 KNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243 (1342)
Q Consensus 164 ~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~ 243 (1342)
+.++++++++.++++...++++|+++|++||++||+|++|..|....+.++.++..+|++++|+||+++|+.||++++++
T Consensus 183 ~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l~G~~gG~i~~~~ 262 (447)
T 3h7f_A 183 EFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGGRSGLIVGKQ 262 (447)
T ss_dssp HHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGGCCCSCEEEEECG
T ss_pred hcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCCCCCCeEEEEECH
Confidence 76788888878888877799999999999999999999998887666665656666899999999999889999999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-----CcEEeeCCCCCeEEEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-----GIRIVSGGTKSHIILV 318 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-----g~~~~~~~~~~~~v~i 318 (1342)
++++.+.....++..+++..+..+++++++.....++++++.+++.++++++.+.|.+. |+++..++..++++|+
T Consensus 263 ~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~ 342 (447)
T 3h7f_A 263 QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLV 342 (447)
T ss_dssp GGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEE
T ss_pred HHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEE
Confidence 99888877666777777777777877777777665577889999999999999999988 8988665567889999
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHH
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIK 378 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~ 378 (1342)
++...+.+.+.+..+++++||.+.....|....+++.++++|+++...++.+++++++..
T Consensus 343 ~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~ 402 (447)
T 3h7f_A 343 DLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTE 402 (447)
T ss_dssp ECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHH
T ss_pred EcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHH
Confidence 998766677888888888899998544444222233356799999999888888877654
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=321.98 Aligned_cols=373 Identities=54% Similarity=0.915 Sum_probs=296.5
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF 86 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~ 86 (1342)
.++..+|.+++.+..+..++.+.+.+++++|++++.+++++.+.+.+.+..+++++.++.+.....++++.+++++++++
T Consensus 5 ~~~~~~~~i~~~~~~e~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 84 (417)
T 3n0l_A 5 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLF 84 (417)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHhcCeeeecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHh
Confidence 56778899999998777777788999999999999999999998866777778877888888888999999999999999
Q ss_pred CCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC
Q psy13354 87 NAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK 166 (1342)
Q Consensus 87 g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~ 166 (1342)
|.+...++.++|++|+..++.++++|||+|++..+.++++...+......|..+.+++++.++++.+|++++++++++.+
T Consensus 85 g~~~~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 164 (417)
T 3n0l_A 85 NCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEK 164 (417)
T ss_dssp TCSEEECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHC
T ss_pred CCCCcceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcC
Confidence 99866344448899999999999999999999888777665544444555666677777777778899999999998556
Q ss_pred CeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEe-chh
Q psy13354 167 PKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK-KKY 245 (1342)
Q Consensus 167 ~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~-~~l 245 (1342)
+++|++++++++...++++|.++|++||++||+|++|..|....+.++..+...|++++|+||+|+|+.||+++++ +++
T Consensus 165 ~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~~~~~~~~~ 244 (417)
T 3n0l_A 165 PKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGGIIMTNDEEL 244 (417)
T ss_dssp CSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCSCEEEEESCHHH
T ss_pred CeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCCeeEEEECCHHH
Confidence 7788887777887779999999999999999999999888776666555555679999999999988889999998 688
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKI 325 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~ 325 (1342)
.+.+.....++..++++....+++.+++......+++++.+++.++++++.+.|.+.|+++...+...+++|+.++..+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (417)
T 3n0l_A 245 AKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREF 324 (417)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTSSS
T ss_pred HHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCCCCceEEEEEcccCCC
Confidence 88887665566666666777777777776655557788899999999999999999888876544567889999876666
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
+.+.+..+++++||.+.+...|..+..++...++|+++...++.+++++++..+
T Consensus 325 ~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~ 378 (417)
T 3n0l_A 325 SGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIV 378 (417)
T ss_dssp CHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHH
Confidence 677777888888999998877777655666678999999888888777776543
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=322.69 Aligned_cols=373 Identities=58% Similarity=0.984 Sum_probs=283.8
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF 86 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~ 86 (1342)
+++..+|++++....+..+..+.+.+++++|+.+|.+.+++.+.+.+.+..+++++.++.+......+++.+++++++++
T Consensus 10 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 89 (420)
T 3gbx_A 10 NIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELF 89 (420)
T ss_dssp CHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHhhhcceeeeccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHh
Confidence 46788899999998877777788999999999999999999998866676677777777776666788888889999999
Q ss_pred CCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC
Q psy13354 87 NAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK 166 (1342)
Q Consensus 87 g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~ 166 (1342)
|.+...++.++|++|+..++.++++|||+|++....|+++...+......|..+..++++.++++.+|++++++++++++
T Consensus 90 ~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 169 (420)
T 3gbx_A 90 GADYANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHK 169 (420)
T ss_dssp TCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHC
T ss_pred CCCCceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcC
Confidence 99866554458999999999999999999999887777654333333344555566777777778899999999998877
Q ss_pred CeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEec---
Q psy13354 167 PKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK--- 243 (1342)
Q Consensus 167 ~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~--- 243 (1342)
++++++++++++...++++|+++|++||++||+||+|+.|....+.++..+..+|++++|+||+++|+.||++++++
T Consensus 170 ~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gg~~~~~~~~~ 249 (420)
T 3gbx_A 170 PKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGDE 249 (420)
T ss_dssp CSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCSCEEEEESSCCH
T ss_pred CeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCCceEEEEcCCcH
Confidence 88888878888888899999999999999999999998887766655555556899999999999888899999998
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
++.+.+.....++..++++.+..++++.++.....++++++.+++.++++++.+.|.+.|+++..++..++++|+.++..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 329 (420)
T 3gbx_A 250 ELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDK 329 (420)
T ss_dssp HHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGG
T ss_pred HHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCCCeEEEEEcCCC
Confidence 78787776656666667777777777777777665577888999999999999999999998865445688999998765
Q ss_pred CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 324 KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
..+.+.+..+++++||.+.+...|...+.++...++|++++..++.+.+++++..+
T Consensus 330 ~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~ 385 (420)
T 3gbx_A 330 NLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKEL 385 (420)
T ss_dssp TCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHH
Confidence 55677777777888999999776665554555667999999998888777776543
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=317.15 Aligned_cols=314 Identities=22% Similarity=0.306 Sum_probs=276.1
Q ss_pred HHHHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 376 IIKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 376 ~~~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
....+|++||+|.+|++++||+++++.+..++..+..+| +||+||+|+|||++++.+++.+.+..
T Consensus 22 ~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~la~~l~~~~-------------- 86 (353)
T 1sxj_D 22 LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGPD-------------- 86 (353)
T ss_dssp ----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCC-EEEECSTTSSHHHHHHHHHHHHHHHH--------------
T ss_pred ccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCE-EEEECCCCCCHHHHHHHHHHHhCCCc--------------
Confidence 345799999999999999999999999999999998888 89999999999999999999987420
Q ss_pred CcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcC------------ccCCceEEEeccCccCCHHHHHHHHHhh
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAP------------INARYKIYVIDEVHMLTHHAFNAMLKTL 523 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p------------~~~~~rvviIDE~~~L~~~~~~~Ll~~L 523 (1342)
.....+..++++...+...+++.+....... ..+++++|+|||++.++...+++|++++
T Consensus 87 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~l 157 (353)
T 1sxj_D 87 ---------LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTM 157 (353)
T ss_dssp ---------HHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHH
T ss_pred ---------ccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHH
Confidence 0012466777776667777776665544321 1346789999999999999999999999
Q ss_pred cCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHH
Q psy13354 524 EEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQ 603 (1342)
Q Consensus 524 e~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~k 603 (1342)
++++..+.+|++++.+.++.+++.+||..++|.+++.+++..++..++.++++.+++++++.+++.++||+|.+++++++
T Consensus 158 e~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~ 237 (353)
T 1sxj_D 158 ETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQS 237 (353)
T ss_dssp HHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC-----CCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhC
Q psy13354 604 AINYSSE-----KITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQIS 678 (1342)
Q Consensus 604 l~~~~~~-----~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~ 678 (1342)
+..+++. .||.++|++++.......++++++++..++...++.+++++...|++|..|+..+.++++
T Consensus 238 ~~~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~-------- 309 (353)
T 1sxj_D 238 ASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYI-------- 309 (353)
T ss_dssp THHHHHHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHH--------
T ss_pred HHHhcCCCccCccccHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------
Confidence 8777543 699999999999999999999999999999999999999999999999999888887652
Q ss_pred cccccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 679 PEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 679 ~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
+++.++.+++.+++..+.++|..||.+.|+++.+|.+++++|.
T Consensus 310 ----------------~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~l~~~~~~~~~ 352 (353)
T 1sxj_D 310 ----------------TNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQ 352 (353)
T ss_dssp ----------------HCSSSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ----------------HhccCCHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 3567899999999999999999999988999999999999874
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-32 Score=314.34 Aligned_cols=297 Identities=18% Similarity=0.250 Sum_probs=254.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|++||+|++|++++||+++++.+.+++..++.++.||++||||+|||++++++++.++
T Consensus 13 ~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~------------------- 73 (324)
T 3u61_B 13 EHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN------------------- 73 (324)
T ss_dssp CSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-------------------
T ss_pred cchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-------------------
Confidence 3479999999999999999999999999999999999999999999999999999999986
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHH-HhhcCccCCceEEEeccCccCC-HHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQ-TIYAPINARYKIYVIDEVHMLT-HHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~-~~~~p~~~~~rvviIDE~~~L~-~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
.++++++++. .+.+.+++.+.. +...++++++++|+|||+|.++ .+.++.|++++++++.++.+|++
T Consensus 74 ----------~~~~~i~~~~-~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~ 142 (324)
T 3u61_B 74 ----------ADMMFVNGSD-CKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIIT 142 (324)
T ss_dssp ----------EEEEEEETTT-CCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEE
T ss_pred ----------CCEEEEcccc-cCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEE
Confidence 3578888765 347777776665 5667888899999999999999 99999999999999899999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHH-------HHHHHHHHHHhcCCCcch-hHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHD-------IVNNLCYILNKENIKFET-SALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~e-------l~~~l~~~~~~~g~~i~~-~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
+|..+++.++|++||.+++|.+|+.++ +..++...+..+++.+++ ++++.+++.++||+|.+++.|+++.
T Consensus 143 ~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-- 220 (324)
T 3u61_B 143 ANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-- 220 (324)
T ss_dssp ESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG--
T ss_pred eCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh--
Confidence 999999999999999999999999877 566677778889999999 9999999999999999999999987
Q ss_pred cCCCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCch
Q psy13354 608 SSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSP 687 (1342)
Q Consensus 608 ~~~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~ 687 (1342)
..+.||.++|.+++.. .+.++++++++..++...++..+.++.. +|..|+..|+.
T Consensus 221 ~~~~i~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~a~~~~~~l~~---~~~~i~~~l~~-------------------- 275 (324)
T 3u61_B 221 SKGVLDAGILSLVTND--RGAIDDVLESLKNKDVKQLRALAPKYAA---DYSWFVGKLAE-------------------- 275 (324)
T ss_dssp GGTCBCC--------------CHHHHHHHHTTCHHHHHHHHHHHSS---CHHHHHHHHHH--------------------
T ss_pred ccCCCCHHHHHHHhCC--HHHHHHHHHHHHcCCHHHHHHHHHHhcc---CHHHHHHHHHH--------------------
Confidence 5567999999998866 6689999999999999999999998877 78888766532
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 688 NYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 688 ~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
.+++.++.+++.+++..+.+.|..+|.+.++.+.+|.+++++|.
T Consensus 276 ------~~~~~~~~~~l~~i~~~l~~~d~~l~~g~~~~~~le~~~~~~~~ 319 (324)
T 3u61_B 276 ------EIYSRVTPQSIIRMYEIVGENNQYHGIAANTELHLAYLFIQLAC 319 (324)
T ss_dssp ------HHHHHSCHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred ------HHHHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 33457888999999999999999999988999999999999974
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=320.42 Aligned_cols=329 Identities=18% Similarity=0.225 Sum_probs=256.1
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHH-HcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCC---CCCcccCCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINAL-DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDG---NGGITSQPCGK 455 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l-~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~---~~~~~~~~c~~ 455 (1342)
+|++||+|++|++++||+.+++.|.+++ ..++.+| ++|+||+|+|||++++.+++.+.+..... .+.....+|..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 7999999999999999999999999999 8899998 99999999999999999999887643211 00011235666
Q ss_pred CcchhhhccCCCccEEEEccCCCcC--HHHHHHHHHHHhh-cCc---------cCCceEEEeccCccCCHHHHHHHHHhh
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTRG--INEMAQLLEQTIY-API---------NARYKIYVIDEVHMLTHHAFNAMLKTL 523 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~~--~~~i~~ii~~~~~-~p~---------~~~~rvviIDE~~~L~~~~~~~Ll~~L 523 (1342)
|..|..+... ++++++...... ...+++.++.+.. .++ .++++++||||++.++.+.+++|++++
T Consensus 82 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~l 158 (354)
T 1sxj_E 82 KLELNVVSSP---YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158 (354)
T ss_dssp ----CCEECS---SEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred cceeeeeccc---ceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence 6666554433 455665543211 1246676666533 222 457899999999999999999999999
Q ss_pred cCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHhcCCcHHHHHHHHH
Q psy13354 524 EEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFE-TSALNLIATGAQGSMRDALSLTD 602 (1342)
Q Consensus 524 e~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~-~~al~~La~~~~g~lr~a~~~L~ 602 (1342)
+++++++.+|+++++++++.++++|||..++|.+++.+++.+|+..+++++|+.++ +++++.+++.++||+|.++++++
T Consensus 159 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 159 EKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp HHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99989999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHH----HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhC
Q psy13354 603 QAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLIL----SIANKIEIYNLSYSIVLKDLSLLLHQISLIQIS 678 (1342)
Q Consensus 603 kl~~~~~~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al----~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~ 678 (1342)
++..+..+.||.+++ +.....+.++|++++++..++...++ +.+.++...|.++..|+..|..++.
T Consensus 239 ~~~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~-------- 308 (354)
T 1sxj_E 239 SMALNNELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLL-------- 308 (354)
T ss_dssp HHHHTTTTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTT--------
T ss_pred HHHHhCCCCcCcCcC--CCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--------
Confidence 998887656876654 23344456899999999987665544 4455666778888877755543221
Q ss_pred cccccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 679 PEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 679 ~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
.+++++..++.+++..+.+.|..+|.+.++++.||.+++++|.+
T Consensus 309 ----------------~~~~~~~~~l~~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~ 352 (354)
T 1sxj_E 309 ----------------DVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCC 352 (354)
T ss_dssp ----------------TCTTSCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred ----------------hccCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 12478999999999999999999998899999999999999853
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=310.78 Aligned_cols=307 Identities=18% Similarity=0.242 Sum_probs=272.9
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
.+|++||+|..|++++||+.+++.|.+.+..++.++ ++|+||+|+|||++++.+++.+.|..
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~----------------- 70 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGRS----------------- 70 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHHGGG-----------------
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCc-----------------
Confidence 478999999999999999999999999999999988 99999999999999999999987521
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHh--hcCc-cCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI--YAPI-NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~--~~p~-~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
....+++++++...+++.++++++.+. ..++ .+++++|+|||+|.++.+..++|+++++++++++++|++
T Consensus 71 -------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~ 143 (323)
T 1sxj_B 71 -------YADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFA 143 (323)
T ss_dssp -------HHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEE
T ss_pred -------ccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEE
Confidence 113477788776667888888888776 4455 456899999999999999999999999999999999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHH
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e 615 (1342)
++..+++.+++.+||..++|.+++.+++.+|+..+++++|+.+++++++.+++.++||+|.++++++++... .+.||.+
T Consensus 144 ~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~-~~~i~~~ 222 (323)
T 1sxj_B 144 CNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG-HGLVNAD 222 (323)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HSSBCHH
T ss_pred eCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCcCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997743 3679999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHH
Q psy13354 616 SMQEMLSIIDQKYLIQILDALAEQDGNLILSIANK-IEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQ 694 (1342)
Q Consensus 616 ~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~-L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~ 694 (1342)
+|.++++.....++++++++ ++...++.++.+ +...|.++..++..+.++++.+.
T Consensus 223 ~v~~~~~~~~~~~i~~~~~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l~--------------------- 278 (323)
T 1sxj_B 223 NVFKIVDSPHPLIVKKMLLA---SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLA--------------------- 278 (323)
T ss_dssp HHHHHHTSCCHHHHHHHHSC---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCT---------------------
T ss_pred HHHHHHCCCCHHHHHHHHhc---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---------------------
Confidence 99999999999999999988 788889998887 88888888888887776655431
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 695 LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 695 ~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
.++..++.++++.+.++|..+|++.++++.+|.++++++.+
T Consensus 279 ---~~~~~~l~~~l~~l~~~~~~l~~~~~~~l~le~l~~~~~~~ 319 (323)
T 1sxj_B 279 ---QVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKL 319 (323)
T ss_dssp ---TSCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhh
Confidence 27889999999999999999998899999999999999864
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=311.40 Aligned_cols=375 Identities=58% Similarity=0.940 Sum_probs=275.9
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
+..++..+|++...+..+..+..+.+.+.+++|+++|.+++++.+.+.+.|..++++..++.+....+.+++.+++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (425)
T 3ecd_A 10 SQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKR 89 (425)
T ss_dssp HCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHhcceeeecccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHH
Confidence 44677788888888877777777789999999999999999999988666666777666666555445666666688999
Q ss_pred HhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHH
Q psy13354 85 IFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAK 163 (1342)
Q Consensus 85 ~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~ 163 (1342)
++|.+.+.++++||++|+..++.+++++||+|++....|+++...+......|..+..++++.+ +++.+|++++++.++
T Consensus 90 ~~~~~~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~ 169 (425)
T 3ecd_A 90 LFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQ 169 (425)
T ss_dssp HHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHH
T ss_pred HhCCCCceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHh
Confidence 9999877565559999999999999999999999887776633333333345665677777766 557899999999998
Q ss_pred hcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEec
Q psy13354 164 KNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243 (1342)
Q Consensus 164 ~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~ 243 (1342)
+.+++++++++++++...++++|.++|++||++||+||+|..|....+.+...+..+|++++|+||+++|+.|||+++++
T Consensus 170 ~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~g~~~~~~ 249 (425)
T 3ecd_A 170 QHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLTND 249 (425)
T ss_dssp HHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCSCEEEEESC
T ss_pred hcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCCcEEEEeCC
Confidence 66678888877888888899999999999999999999998888766655555555799999999999888899999985
Q ss_pred -hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC
Q psy13354 244 -KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 244 -~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~ 322 (1342)
++.+.+......+..+++..+..+++..++.....++++.+.+++.++++++.+.|.+.|+++..++..++++|+.++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 329 (425)
T 3ecd_A 250 EEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRP 329 (425)
T ss_dssp HHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGG
T ss_pred HHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCCceEEEEEeCC
Confidence 6777776655555556677777777777777766557788899999999999999999999886544567899999876
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
...+.+.+..+++++||.+.+...|+....++..+++|++++..++.+.+++++..+
T Consensus 330 ~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~ 386 (425)
T 3ecd_A 330 KGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREV 386 (425)
T ss_dssp GTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHH
Confidence 555667777777888999998776665444444568999988888877777776543
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=296.24 Aligned_cols=283 Identities=16% Similarity=0.153 Sum_probs=234.6
Q ss_pred cchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEc
Q psy13354 395 GQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMD 474 (1342)
Q Consensus 395 Gq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~ 474 (1342)
||+++++.|.+.+++++ .|+||||||||+|||++++++++.+. .|. ..++|+.+++
T Consensus 1 g~~~~~~~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~----------------~~~-------~~~~d~~~l~ 56 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVE----------------KFP-------PKASDVLEID 56 (305)
T ss_dssp ---CHHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHH----------------TSC-------CCTTTEEEEC
T ss_pred ChHHHHHHHHHHHHCCC-CcEEEEECCCCCCHHHHHHHHHHhCc----------------hhh-------ccCCCEEEEc
Confidence 79999999999999999 88999999999999999999998532 111 1568999999
Q ss_pred cCC-CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEE
Q psy13354 475 AAS-TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQF 553 (1342)
Q Consensus 475 ~~~-~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i 553 (1342)
++. ..++++++++++.+...|+++++|||||||+|.|+.+++|+|++++|+||++++||++|+++++++++|+|| ++
T Consensus 57 ~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~ 134 (305)
T 2gno_A 57 PEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VF 134 (305)
T ss_dssp CSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SE
T ss_pred CCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eE
Confidence 864 678999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHH-------HhhcCCCCCHHHHHHHhccCcH
Q psy13354 554 NLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQA-------INYSSEKITLNSMQEMLSIIDQ 626 (1342)
Q Consensus 554 ~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl-------~~~~~~~It~e~V~~~v~~~~~ 626 (1342)
+|++++++++.+||.+++ + ++++++ +.++||+|.+++.++.. ..+....-+.++|.++++...+
T Consensus 135 ~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~ 205 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLE 205 (305)
T ss_dssp EEECCCCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTTCSHHH
T ss_pred eCCCCCHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHccCCc
Confidence 999999999999999887 3 677776 45799999887766421 1111111147889999988886
Q ss_pred H--HHHHHHHHHHccChHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCC-H
Q psy13354 627 K--YLIQILDALAEQDGNLILSIANKIEI--YNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFN-I 701 (1342)
Q Consensus 627 ~--~if~l~dal~~~~~~~al~~l~~L~~--~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s-~ 701 (1342)
+ ++|+|++++.++|...|++++++|.. .|++| +.+|.+++|.++... .|. .
T Consensus 206 ~~~~v~~l~~ai~~~~~~~a~~~~~~l~~~~~g~~~---~~~i~~~~r~l~~~~---------------------~~~~~ 261 (305)
T 2gno_A 206 GYLACRELLERFSKVESKEFFALFDQVTNTITGKDA---FLLIQRLTRIILHEN---------------------TWESV 261 (305)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHHHHHHHHSCTHHH---HHHHHHHHHHHHHTS---------------------CCCSH
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHhhc---------------------hhhhH
Confidence 6 89999999999999999999999998 78777 778888998887322 333 3
Q ss_pred HHHHHHHHHHHHHHHhhcc-CCChhHHHHHHHHHhHcc
Q psy13354 702 EQIQLFYQISIHGRNELEL-APDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 702 ~~L~~~l~~l~~~d~~lK~-~~~~~~~le~~ll~l~~~ 738 (1342)
+.|. .-.+.+.|...|+ +.++.+-++.++.++|..
T Consensus 262 ~~l~--~~~~~~~~~~~k~~g~~~~lql~~l~~~~~~~ 297 (305)
T 2gno_A 262 EDQK--SVSFLDSILRVKIANLNNKLTLMNILAIHRER 297 (305)
T ss_dssp HHHH--HHHHHHHHHTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 3344 4556666777774 789999999999999964
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-29 Score=299.21 Aligned_cols=372 Identities=58% Similarity=0.984 Sum_probs=272.4
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF 86 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~ 86 (1342)
.++.++|.++..+..+.....+.+.++++++++++.+++++.+.+.+.+..+++.+.++.+.....++++.+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~ 82 (405)
T 2vi8_A 3 YLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF 82 (405)
T ss_dssp SHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhCHHHHHHHHHHHHHhhcceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh
Confidence 34567788888887777666666778889999999999999888754554456655556665667888888899999999
Q ss_pred CCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhc
Q psy13354 87 NAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKN 165 (1342)
Q Consensus 87 g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~ 165 (1342)
|.+...+++++|++|+..++.+++.+||+|+++...|+++..........|.++.+++++.+ +++.+|++++++.+++.
T Consensus 83 g~~~~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~ 162 (405)
T 2vi8_A 83 GAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLH 162 (405)
T ss_dssp TCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH
T ss_pred CCCceEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhc
Confidence 99876665558899999999999999999999887776654322111223333466666665 56789999999999864
Q ss_pred CCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEechh
Q psy13354 166 KPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKY 245 (1342)
Q Consensus 166 ~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l 245 (1342)
+++++++++++++...++++|.++|++||++||+|++|+.|....+.....+..+|++++|+||+++|+.||++++++++
T Consensus 163 ~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~~~~ 242 (405)
T 2vi8_A 163 RPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQF 242 (405)
T ss_dssp CCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCEEEEECHHH
T ss_pred CCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCCeEEEEcHHH
Confidence 56777777777776668999999999999999999999977654443332233578999999999976888999999988
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKI 325 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~ 325 (1342)
++.+.....++..++++....+++.+++......++++..+++.++++++.+.|.+.|+++..++..++++|+.++..+.
T Consensus 243 ~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 322 (405)
T 2vi8_A 243 AKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQL 322 (405)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC
T ss_pred HHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCCCCceEEEEEccCCCC
Confidence 88887655555556555555555555555444447788899999999999999999898876533457889999875333
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHH
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIK 378 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~ 378 (1342)
+...+...|.++||.+.++..|.....++..+++|++++..++...+++++..
T Consensus 323 ~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~ 375 (405)
T 2vi8_A 323 TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDE 375 (405)
T ss_dssp CHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred CHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHH
Confidence 44444455566799999876442211122245699999886665555566544
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-28 Score=290.61 Aligned_cols=367 Identities=57% Similarity=0.941 Sum_probs=268.8
Q ss_pred ccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC
Q psy13354 10 KIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE 89 (1342)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~ 89 (1342)
..+|.+++.+..+..+..+.+.++++++++++.+.+++.+.+.+.+..+|+.+.++.+.+....+++.+++++++++|.+
T Consensus 6 ~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~ 85 (407)
T 2dkj_A 6 KRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA 85 (407)
T ss_dssp CCCHHHHHHHHHHHHHHHTSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccCHHHHHHHHHHHHHhhcceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC
Confidence 34688888888877777788999999999999999999988854344455554444444445567766778999999998
Q ss_pred CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCe
Q psy13354 90 AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPK 168 (1342)
Q Consensus 90 ~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~ 168 (1342)
...++.++|++|+..++.+++.+||+|+++...|+++......+...|..+..++++.+ +++.+|++++++.+++.+++
T Consensus 86 ~~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 165 (407)
T 2dkj_A 86 WANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPK 165 (407)
T ss_dssp EEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCS
T ss_pred cceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCe
Confidence 66555558999999999999999999999887777664323333444554466666655 46789999999999864667
Q ss_pred EEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEe-chhHH
Q psy13354 169 LIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK-KKYKK 247 (1342)
Q Consensus 169 liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~-~~l~~ 247 (1342)
+++++.+++|...++++|.++|++||++||+|++|+.|....+......+..|++++|+||+++|+.||+++++ +++++
T Consensus 166 ~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~~~~~~~~~~~ 245 (407)
T 2dkj_A 166 VIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDPELGK 245 (407)
T ss_dssp EEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSCEEEEESCHHHHH
T ss_pred EEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCceEEEECCHHHHH
Confidence 77777778887779999999999999999999999987665554333334479999999999988888999999 68888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCH
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
.+.....++..+++.....+++.+++......++++..+++.++++++.+.|.+.|+++..++..++++|+.++....+.
T Consensus 246 ~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 325 (407)
T 2dkj_A 246 RIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIVTGGTDNHLFLVDLRPKGLTG 325 (407)
T ss_dssp HHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCH
T ss_pred HHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceeecCCCCceEEEEECcccCCCH
Confidence 88765555555555554444555555554345778889999999999999999989887643456788999987533344
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhH
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEI 376 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~ 376 (1342)
..+...+.++||.+.++..|.....+...+++|++++..++...+++++
T Consensus 326 ~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i 374 (407)
T 2dkj_A 326 KEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEM 374 (407)
T ss_dssp HHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGH
T ss_pred HHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHH
Confidence 4445555677999998765422111122457999987754333333443
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=267.90 Aligned_cols=301 Identities=22% Similarity=0.267 Sum_probs=242.8
Q ss_pred HHHhhccCCCCccccccchhhH---HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHIS---KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~---~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
.+|+++|+|++|++++||++++ ..|...+..+++ +.+||+||||||||++|+.+++.+++
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~-~~vLL~GppGtGKTtlAr~ia~~~~~---------------- 76 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHL-HSMILWGPPGTGKTTLAEVIARYANA---------------- 76 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCC-CEEEEECSTTSSHHHHHHHHHHHTTC----------------
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCC-cEEEEECCCCCcHHHHHHHHHHHhCC----------------
Confidence 5899999999999999999999 899999999988 56999999999999999999999863
Q ss_pred CcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
.+..+++. ..++.++++++..+...+..+++.++||||+|.++...++.|++++++ ..+++|++
T Consensus 77 -------------~f~~l~a~-~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~a 140 (447)
T 3pvs_A 77 -------------DVERISAV-TSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGA 140 (447)
T ss_dssp -------------EEEEEETT-TCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEE
T ss_pred -------------CeEEEEec-cCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEec
Confidence 46666654 456788999998888777778889999999999999999999999998 45778888
Q ss_pred eCCCC--CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh-------cCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy13354 536 TTEPQ--KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK-------ENIKFETSALNLIATGAQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 536 t~~~~--kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~-------~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~ 606 (1342)
|+... ++.++|.+||.++.|.+++.+++..++...+.. .++.+++++++.|++.++||+|.+++.|+++..
T Consensus 141 tt~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 141 TTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMAD 220 (447)
T ss_dssp ESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 76543 788999999999999999999999999999987 567899999999999999999999999999998
Q ss_pred hcC------CCCCHHHHHHHhccCcH----------HHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy13354 607 YSS------EKITLNSMQEMLSIIDQ----------KYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLH 670 (1342)
Q Consensus 607 ~~~------~~It~e~V~~~v~~~~~----------~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r 670 (1342)
++. ..||.++|++++..... +.+..+.+++...+.+.|+.++.+|+..|++|..|...|.+.-
T Consensus 221 ~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a- 299 (447)
T 3pvs_A 221 MAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIA- 299 (447)
T ss_dssp HSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-
T ss_pred hcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-
Confidence 875 24999999999987632 4667777778889999999999999999999998887776533
Q ss_pred HHHHHhhCcccccCCchhHH---HHHHHHhcCCHHHHHHHH-HHHHHHHHhhcc
Q psy13354 671 QISLIQISPEILIKDSPNYN---EIIQLSKKFNIEQIQLFY-QISIHGRNELEL 720 (1342)
Q Consensus 671 ~l~~~k~~~~~~~~~~~~~~---~~~~~a~~~s~~~L~~~l-~~l~~~d~~lK~ 720 (1342)
..+-|..++.... ...+.+.+..+.+-.-.+ +.+.-+-.+-|+
T Consensus 300 -------~edig~a~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pks 346 (447)
T 3pvs_A 300 -------SEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKS 346 (447)
T ss_dssp -------HHTTGGGCTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC
T ss_pred -------HhcccCCChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcc
Confidence 2345666655433 245667777776654443 333334445554
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-25 Score=243.02 Aligned_cols=240 Identities=54% Similarity=0.911 Sum_probs=217.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|..+|+|..|++++|++.+++.|..++..++.++.++|+||+|+|||++++.+++.+.+.. .....+|..|.
T Consensus 10 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-----~~~~~~~~~~~ 84 (250)
T 1njg_A 10 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-----GITATPCGVCD 84 (250)
T ss_dssp -CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTT-----CSCSSCCSCSH
T ss_pred HHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC-----CCCCCCCcccH
Confidence 3468899999999999999999999999999999888999999999999999999999998643 34567899999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
.|..+....+.++..++.......+.++++++.+...+..+++.+|+|||++.++.+..+.|++++++++..+++|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred HHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 99999988888888887765556677888888777777777889999999999999999999999999988999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
....+.+++.+|+..+++++++.+++.+++..++.+.+..+++++++.+++.++|++|.+.+++++++.++.+.||.++|
T Consensus 165 ~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~v 244 (250)
T 1njg_A 165 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 244 (250)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTSSBCHHHH
T ss_pred ChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCceecHHHH
Confidence 98889999999999999999999999999999999999999999999999999999999999999999888788999999
Q ss_pred HHHhc
Q psy13354 618 QEMLS 622 (1342)
Q Consensus 618 ~~~v~ 622 (1342)
+++++
T Consensus 245 ~~~~~ 249 (250)
T 1njg_A 245 SAMLG 249 (250)
T ss_dssp HHHSC
T ss_pred HHHhC
Confidence 99875
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=245.43 Aligned_cols=317 Identities=20% Similarity=0.214 Sum_probs=221.9
Q ss_pred eeeeecCCC----CcHHHHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 30 IELIASENY----TSLAVMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 30 i~l~a~~n~----l~~~v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
|.+..+ ++ .++.+.+++.+.+. .+..+++.++...+ ... ..++++.+++++|.+.+++++ +|++|+..
T Consensus 67 id~~~~-~~lg~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~G~~~~----~~~l~~~la~~~g~~~~i~~~-sGs~a~~~ 139 (427)
T 2w8t_A 67 ILLGTY-NYMGMTFDPDVIAAGKEALE-KFGSGTCGSRMLNGTFHD----HMEVEQALRDFYGTTGAIVFS-TGYMANLG 139 (427)
T ss_dssp EECSCC-CTTCGGGCHHHHHHHHHHHH-HHCSCCCSCTTTTCCCHH----HHHHHHHHHHHHTCSEEEEES-CHHHHHHH
T ss_pred EEEECc-ccccCCCCHHHHHHHHHHHH-HhCCCCcccccccCCcHH----HHHHHHHHHHHhCCCceEEec-CcHHHHHH
Confidence 445554 44 34569999888875 34434443333322 343 344555888999988776666 99999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc---CCeEEEEcCCCCC--c
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN---KPKLIIAGASAYS--Q 179 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~---~~~liv~~~s~~~--~ 179 (1342)
++.+++++||.|++....| .+....+...|. +++.++. .|++++++.+++. ++++|++++++++ .
T Consensus 140 al~~l~~~gd~vl~~~~~h---~~~~~~~~~~g~--~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~ 209 (427)
T 2w8t_A 140 IISTLAGKGEYVILDADSH---ASIYDGCQQGNA--EIVRFRH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGD 209 (427)
T ss_dssp HHHHHSCTTCEEEEETTCC---HHHHHHHHHSCS--EEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESEETTTTE
T ss_pred HHHHhcCCCCEEEECCccc---HHHHHHHHHcCC--eeEEeCC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCC
Confidence 9999999999999766544 444455566676 4555554 4899999999864 5677777665554 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CCC----CCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GEY----PNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~----~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~ 254 (1342)
..++++|+++|++||++||+||+|+.|.++. +.. .+....+|++++|+||++ |+.|||+++++++++.+.....
T Consensus 210 ~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~-g~~gG~v~~~~~l~~~l~~~~~ 288 (427)
T 2w8t_A 210 IAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSV-GTVGGFVVSNHPKFEAVRLACR 288 (427)
T ss_dssp ECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTT-CSCCEEEEECCTTGGGGGGTCH
T ss_pred ccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhh-ccCCCEEEeCHHHHHHHHHhcc
Confidence 5589999999999999999999999876642 111 111224689999999999 7888999999998888776433
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
++.+++..++...+++.+..+... ..++.++++.++++++.+.|.+.|+++..++..++++|+.+++.....++...++
T Consensus 289 ~~~~~~~~~~~~~aa~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 367 (427)
T 2w8t_A 289 PYIFTASLPPSVVATATTSIRKLM-TAHEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALL 367 (427)
T ss_dssp HHHSSCCCCHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCSSEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 333333344455555444444443 4567889999999999999998888875322256788988865333445666666
Q ss_pred HHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++ ||.+.++..|..+.+ .+++|++++..++.
T Consensus 368 ~~-Gi~v~~~~~~~~~~~---~~~lRi~~~~~~t~ 398 (427)
T 2w8t_A 368 DG-GLYVNMARPPATPAG---TFLLRCSICAEHTP 398 (427)
T ss_dssp HT-TEECEEECTTTSCTT---CEEEEEECCTTCCH
T ss_pred HC-CeEEeeeCCCCCCCC---CeEEEEEeCCCCCH
Confidence 65 999999887776543 46799999886554
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-23 Score=246.63 Aligned_cols=317 Identities=22% Similarity=0.286 Sum_probs=221.7
Q ss_pred ceeeeecCCCC----cHHHHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENYT----SLAVMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l----~~~v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.|.+.++ +++ ++.+.+++.+.+. .+..+++...+. +..+.. ..+++++++++|.++.++++ +|++|+.
T Consensus 45 ~id~~~~-~~~g~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~~~~----~~l~~~la~~~~~~~~i~~~-sGt~a~~ 117 (399)
T 3tqx_A 45 VLNFCAN-NYLGLADHPALIKTAQTVVE-QYGFGMASVRFICGTQTIH----KELEKDISEFLGTDDTILYS-SCFDANG 117 (399)
T ss_dssp EEECSSC-CTTSCTTCHHHHHHHHHHHH-HHCSCCCSCCCCCCCBHHH----HHHHHHHHHHHTCSEEEEES-CHHHHHH
T ss_pred EEEeecc-CcccccCCHHHHHHHHHHHH-HhCCCCCCcCccccCchHH----HHHHHHHHHHHCCCcEEEEC-chHHHHH
Confidence 3555555 543 3669999888875 354444433333 223333 44555899999988777776 8999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS 178 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~ 178 (1342)
.++.+++++||+|++..+.| .+....+...|. +++.++. +|++++++.+++. +++++++++++++
T Consensus 118 ~~l~~~~~~gd~v~~~~~~~---~~~~~~~~~~g~--~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~np 187 (399)
T 3tqx_A 118 GLFETLLGPEDAIISDELNH---ASIIDGIRLCKA--QRYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSM 187 (399)
T ss_dssp TTHHHHCCTTCEEEEETTCC---HHHHHHHHSCCS--EEEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETT
T ss_pred HHHHHhcCCCCEEEECCccc---HHHHHHHHHcCC--ceeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCC
Confidence 99999999999999776544 444555566676 4555554 3778888888763 5777777776666
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC-----CCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhh
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP-----NPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~-----~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~ 251 (1342)
...++++|+++|++||++||+|++|+.|.++..... +.....|++++|+||+++|+.|||+++++++++.+..
T Consensus 188 tG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~~~~~~~~~~ 267 (399)
T 3tqx_A 188 DGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGHKEIIEWLRN 267 (399)
T ss_dssp TTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCCEEEEECHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCceEEEEcCHHHHHHHHH
Confidence 345899999999999999999999976654321100 1112468999999999965899999999999888876
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
....+.++++.++...+++.+..+...++.++.++++.++++++.+.|.+.|+++. ++.++++|+.++......++..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~ 345 (399)
T 3tqx_A 268 RSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLGFQLV--PGNHPIIPVMLGDAQLATNMAD 345 (399)
T ss_dssp HCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCSSSEEEEEEECHHHHHHHHH
T ss_pred hCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcC--CCCCCEEEEEeCCHHHHHHHHH
Confidence 54444333333444444444444443236788899999999999999999888764 3556788888875433456666
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+++ +||.+.+..++..+.+ .+++|++++..++
T Consensus 346 ~l~~-~gi~v~~~~~~~~~~~---~~~iRi~~~~~~~ 378 (399)
T 3tqx_A 346 HLLQ-EGIYVVGFSYPVVPMG---KARIRVQMSAVHT 378 (399)
T ss_dssp HHHH-TTEECCEECTTTSCTT---CEEEEEECCTTCC
T ss_pred HHHH-CCCEEeeeCCCCCCCC---CceEEEEeecCCC
Confidence 7766 5999998766654432 4679999986554
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-21 Score=235.09 Aligned_cols=314 Identities=15% Similarity=0.141 Sum_probs=221.8
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC--ceEecCCHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA--ANVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~--~vi~~~sGs~A~~~a 105 (1342)
..+.+.+++..+++.+.+++.+.+. ++ + ......+.+.+++++++++|.+. .+++++||++|+..+
T Consensus 13 ~~~~~~pgp~~~~~~v~~a~~~~~~-----~~-----~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~ 80 (411)
T 3nnk_A 13 SRLLMGPGPINADPRVLRAMSSQLI-----GQ-----Y--DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAI 80 (411)
T ss_dssp CCEEESSSCCCCCHHHHHHHTSCCC-----CT-----T--CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhhcccc-----cc-----c--cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHH
Confidence 3466777888888889888765431 11 1 12233566677889999999874 356776899999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
+.+++.+||+|++....+.+.. ....+...|. +++.++.++++.+|++++++++++.++++|++++++++ ...++
T Consensus 81 ~~~~~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 157 (411)
T 3nnk_A 81 LVSAIRPGDKVLVPVFGRFGHL-LCEIARRCRA--EVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPL 157 (411)
T ss_dssp HHHHCCTTCEEEEEECSHHHHH-HHHHHHHTTC--EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred HHHhcCCCCEEEEecCCchHHH-HHHHHHHcCC--eEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccH
Confidence 9999999999998775443211 4445566677 45555667778899999999998756677666665555 44589
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---------
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--------- 253 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--------- 253 (1342)
++|+++|++||++||+|++|+.+...... ....+|++++|+||++.|+.| |++++++++++.+....
T Consensus 158 ~~i~~l~~~~~~~li~Dea~~~~~~~~~~---~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~ 234 (411)
T 3nnk_A 158 AELGEICRRYDALFYTDATASLGGNPLET---DVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTD 234 (411)
T ss_dssp TTHHHHHHHHTCEEEEECTTTBTTBCCCT---TTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCT
T ss_pred HHHHHHHHHcCCEEEEECCcccCCcccch---hccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhccccccccccc
Confidence 99999999999999999998875441110 011368999999999768878 99999999988876532
Q ss_pred --------------------------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 254 --------------------------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 254 --------------------------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
..+..++++.....++..++......++++..+++.++++++.+.|.+.|+++.
T Consensus 235 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~ 314 (411)
T 3nnk_A 235 AHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETF 314 (411)
T ss_dssp TCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred ccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeC
Confidence 011224455556666655555544434788899999999999999999888765
Q ss_pred eCCC--CCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 308 SGGT--KSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 308 ~~~~--~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.. ..+++++.++......++...+++++||.+.++..+ ...+++|+++..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~------~~~~~iRi~~~~ 368 (411)
T 3nnk_A 315 GDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGP------LHGKVWRIGTMG 368 (411)
T ss_dssp SCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGG------GTTTEEEEECCG
T ss_pred CCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCC------CCCCEEEEeCcc
Confidence 4221 256788888654445566777777779999875322 123579999833
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-22 Score=237.62 Aligned_cols=318 Identities=19% Similarity=0.190 Sum_probs=219.1
Q ss_pred CceeeeecCC--C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 28 NNIELIASEN--Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n--~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
..+.+..+++ + .++.+.+++.+.+.. +..++....+ ..+..++.+++++++++++|.+++++++ ||++|+..
T Consensus 44 ~~idl~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~---~~g~~~~~~~l~~~la~~~g~~~v~~~~-ggt~a~~~ 118 (398)
T 3a2b_A 44 RVLMFGSNSYLGLTTDTRIIKAAQDALEK-YGTGCAGSRF---LNGTLDIHVELEEKLSAYVGKEAAILFS-TGFQSNLG 118 (398)
T ss_dssp EEEECSCSCTTCGGGCHHHHHHHHHHHHH-HCSCCCSBTT---TTCCCHHHHHHHHHHHHHHTCSEEEEES-SHHHHHHH
T ss_pred eEEEeecccccCCCCCHHHHHHHHHHHHH-cCCCCCCcCc---ccCCcHHHHHHHHHHHHHhCCCcEEEEC-CHHHHHHH
Confidence 3466666654 2 556699998888743 3222221111 1122356677777999999987555555 99999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc---CCeEEEEcCCCCC--c
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN---KPKLIIAGASAYS--Q 179 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~---~~~liv~~~s~~~--~ 179 (1342)
++.++++|||+|++..+.|+ +....+...|. +++.++. +|++++++.+++. ++++++++++++| .
T Consensus 119 ~~~~~~~~gd~V~~~~p~~~---~~~~~~~~~g~--~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~ 188 (398)
T 3a2b_A 119 PLSCLMGRNDYILLDERDHA---SIIDGSRLSFS--KVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGD 188 (398)
T ss_dssp HHHHSSCTTCEEEEETTCCH---HHHHHHHHSSS--EEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCC
T ss_pred HHHHHhCCCCEEEECCccCH---HHHHHHHHcCC--ceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCC
Confidence 99999999999997775554 44455566676 4555554 4899999999874 5677777776665 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CCCC----CCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GEYP----NPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~----~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~ 254 (1342)
..++++|.++|++||++||+||+|+.+.++. +... +..+.+|++++|+||++ ++.|||+++++++++.+.....
T Consensus 189 ~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~-~~~GG~~~~~~~~~~~l~~~~~ 267 (398)
T 3a2b_A 189 IVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSL-ASLGGFVAGDADVIDFLKHNAR 267 (398)
T ss_dssp BCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTT-CSSCEEEEECHHHHHHHHHHCH
T ss_pred ccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccc-cCCCcEEEeCHHHHHHHHHhcc
Confidence 4589999999999999999999998775522 1111 00112589999999999 7888999999998888876332
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
.+..+++.++.+.+++.+..+... +.++.++++.++++++.+.|.+.|+++.. +.++++|+.++......++...++
T Consensus 268 ~~~~~~~~~~~~~a~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~g~~~~~~~~~~~~~~~l~~~l~ 344 (398)
T 3a2b_A 268 SVMFSASMTPASVASTLKALEIIQ-NEPEHIEKLWKNTDYAKAQLLDHGFDLGA--TESPILPIFIRSNEKTFWVTKMLQ 344 (398)
T ss_dssp HHHSSBCCCHHHHHHHHHHHHHHH-HCTHHHHHHHHHHHHHHHHHHHTTCCBCS--CCSSEEEEECCCHHHHHHHHHHHH
T ss_pred cceecCCCCHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHhcCCCcCC--CCCCEEEEEcCCHHHHHHHHHHHH
Confidence 333333445555543323333332 45567889999999999999998877643 346889998864222345666666
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++ ||.+.++..|..+. ..+++|++++..++
T Consensus 345 ~~-gi~v~~~~~~~~~~---~~~~iRis~~~~~~ 374 (398)
T 3a2b_A 345 DD-GVFVNPVVSPAVPA---EESLIRFSLMATHT 374 (398)
T ss_dssp HT-TEECEEECTTTSCG---GGCEEEEECCTTCC
T ss_pred HC-CcEEEeeCCCCCCC---CCceEEEEEeCCCC
Confidence 65 99999877665432 24679999987544
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-25 Score=270.18 Aligned_cols=251 Identities=15% Similarity=0.129 Sum_probs=181.0
Q ss_pred hhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCC
Q psy13354 804 VDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGD 882 (1342)
Q Consensus 804 ~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~ 882 (1342)
.++..+.+.+.+.+++ .+++|+.+ +|++|..+++. .+|.+.+| .+.||.||+||| |.+++..|++|+
T Consensus 129 ~~~~~l~~~L~~~l~~-~Gv~i~~~~~V~~i~~~~~~-~~V~~~~g-~i~ad~VIlAtG---------~~S~p~~gs~g~ 196 (417)
T 3v76_A 129 HSAKDIIRMLMAEMKE-AGVQLRLETSIGEVERTASG-FRVTTSAG-TVDAASLVVASG---------GKSIPKMGATGL 196 (417)
T ss_dssp SCHHHHHHHHHHHHHH-HTCEEECSCCEEEEEEETTE-EEEEETTE-EEEESEEEECCC---------CSSCGGGTCCCH
T ss_pred CCHHHHHHHHHHHHHH-CCCEEEECCEEEEEEEeCCE-EEEEECCc-EEEeeEEEECCC---------CccCCCCCCCcH
Confidence 3455566666666654 48999765 79999888775 57888888 899999999999 778888887765
Q ss_pred cchHHHHHHHH-HcCCCccccccCCC------------cccccCccccccce----eecCCCCCCCcccccCCCCCCCCc
Q psy13354 883 FSTTSLAKRLK-ELQLSHGRLKTGTP------------PRIDKRTIDFSKME----EQIGDFDPVPVFSVLGNINLHPKQ 945 (1342)
Q Consensus 883 ~~s~~l~~~l~-~~g~~~~~~~~~~~------------~r~~~~si~~~~~~----~~~~d~~~~~~f~~~~~~~~~~~~ 945 (1342)
+..+. ++|+++.++.++.. +.+.+.+++. .+. ...|| ++|||||++||+++ +
T Consensus 197 ------g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~-~lft~~G~sGp~il---~ 265 (417)
T 3v76_A 197 ------AYRIAEQFGLPVVETRPALVPLTLDQAQLAKLGALAGVAADA-EARFGKAAFREA-VLITHRGLSGPAIL---Q 265 (417)
T ss_dssp ------HHHHHHHTTCCEEEEEEESCCEECCHHHHHHTGGGTTCEEEE-EEEETTEEEEEE-EEECSSEEESHHHH---H
T ss_pred ------HHHHHHHCCCCEecccceeeeEEecCccccccccCCCCceeE-EEEECCEeeeee-eEEECCCcchHHHH---H
Confidence 44454 36776655554433 4455556542 111 23578 99999999999988 9
Q ss_pred cccchhhcchhHHHHHHhhcccCCCCcc-cc-c-cccCCCCCCcccccccCCCCCccceeEeecccccceeecCccccCC
Q psy13354 946 LSCFITHTNEKTHNIIRSEFKNSPIFSG-KI-E-SIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSL 1022 (1342)
Q Consensus 946 ~~c~~~~~~~~~~~~i~~~~~~~p~~~~-~~-~-~~g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~~~~g~~~~l 1022 (1342)
+|||+... ....+|+.|.++. ++ . -..++--.++. ...+...+-.|.+..++...+ ++....++
T Consensus 266 ~S~~~~~~-------~~~~id~~p~~~~~~~~~~~~~~~~~~~~~-----~~l~~~lp~~~~~~~~~~~~~-~~~~~~~~ 332 (417)
T 3v76_A 266 ISSYWREG-------EEIVLRLMPDIDIASILKGMRRANGRQAVQ-----TALADILPRRLAQFFADEAKL-TGRMLADL 332 (417)
T ss_dssp HTTTCCTT-------CCEEEEESTTSCHHHHHHHHHHHTCSSBHH-----HHHTTTSCHHHHHHHHHHTTC-TTCBGGGC
T ss_pred HHHHhhCC-------CEEEEECCCCCCHHHHHHHHHHhchhhhHH-----HHHHHHhhHHHHHHHHHhcCC-CCCchhhC
Confidence 99998652 2467888998872 11 0 00111111111 111112223344555555556 77788999
Q ss_pred CHHHHHHHHHhcccc----------cceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHHH------H
Q psy13354 1023 PFEAQIELVQSIDGM----------KNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEE------A 1086 (1342)
Q Consensus 1023 ~~~~q~~~~~~i~gl----------e~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~e------A 1086 (1342)
++++..++++.|+.+ ++|+||+|||++++ |||+ |||||.+||||||||++|++|+++ |
T Consensus 333 ~~~~~~~l~~~l~~~~~~~~g~~~~~~a~vt~GGV~~~e--i~~~----tmesk~~~gLy~aGE~lD~~~~~GGynlq~a 406 (417)
T 3v76_A 333 SDKTIDALASSIQVWAVKPAGSEGYRTAEVTLGGVDTRA--LDSR----TMQAKEVPGLYFVGECVDVTGWLGGYNFQWA 406 (417)
T ss_dssp CHHHHHHHHHHHHSEEECCCEECCTTTCSEEEEEECGGG--BCTT----TCBBTTSTTEEECGGGBSEEECSSSHHHHHH
T ss_pred CHHHHHHHHHHhcCCEEEecccCCcceEEEeCCCCcccc--CChh----hccccCCCCeEEEEEeEecccCCCCHHHHHH
Confidence 999999999998865 99999999998888 9999 999999999999999999999884 9
Q ss_pred HHHHHHHHHH
Q psy13354 1087 ASQGLLAGLN 1096 (1342)
Q Consensus 1087 ~~~G~~Ag~n 1096 (1342)
|+||++||.+
T Consensus 407 ~stG~~ag~~ 416 (417)
T 3v76_A 407 WASGFVAGQD 416 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhCc
Confidence 9999999975
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=233.42 Aligned_cols=319 Identities=11% Similarity=0.062 Sum_probs=218.2
Q ss_pred hccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHH
Q psy13354 25 RQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGS 99 (1342)
Q Consensus 25 ~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs 99 (1342)
..++.|.+..+.+.+ +|.+.+++.+.+.+.. ..|....+..++++++++++.+.+|.+ +.+++++||+
T Consensus 29 ~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~ 101 (391)
T 3h14_A 29 AGRRIIHMEVGQPGTGAPRGAVEALAKSLETDA-------LGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSS 101 (391)
T ss_dssp TTCCCEECCCSSCSSCSCHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred cCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChH
Confidence 345678888887654 4558888887774211 123333345688888888888777733 5566666999
Q ss_pred HHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 100 QANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 100 ~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+|+..++.+++++||+|++..+.+ ......+...|..+..++++.+.++.+|++++++. ++++++++++++|
T Consensus 102 ~al~~~~~~l~~~gd~vl~~~p~~---~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~----~~~~v~i~~p~npt 174 (391)
T 3h14_A 102 GGFLLAFTALFDSGDRVGIGAPGY---PSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL----DLAGLMVASPANPT 174 (391)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCC---HHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS----CCSEEEEESSCTTT
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCC---ccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc----CCeEEEECCCCCCC
Confidence 999999999999999999777544 44445566777744444333223467899999876 4555555555555
Q ss_pred cc-c---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHH
Q psy13354 179 QY-I---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKII 249 (1342)
Q Consensus 179 ~~-~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l 249 (1342)
+. . ++++|+++|++||++||+|++|+.+.+... ...... ..+++++|+||++ |+.| ||+++++++++.+
T Consensus 175 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~ 252 (391)
T 3h14_A 175 GTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK-AVTALELTDECYVINSFSKYF-SMTGWRVGWMVVPEDQVRVV 252 (391)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGGGTCSSSEEEEESSSTT-CCTTSCCEEEECCGGGHHHH
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCC-CcChhhcCCCEEEEEechhcc-CCccceeEEEEeCHHHHHHH
Confidence 22 2 499999999999999999999976544321 222221 2468899999999 5555 9999999998888
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC-CCHH
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK-ITGK 328 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~-~~~~ 328 (1342)
......+.++ ++.+.+.++..++. ..+++++.++++.++++++.+.|.+.|+.....+.+++++|+.++... ...+
T Consensus 253 ~~~~~~~~~~-~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (391)
T 3h14_A 253 ERIAQNMFIC-APHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLTDDSRA 329 (391)
T ss_dssp HHHHHHTTCC-CCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTTCSCHHH
T ss_pred HHHHhhhccC-CCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCccCCCHHH
Confidence 7644333333 33444444444443 334678888999999999999999887665444566788999887633 3456
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+...+++++||.+.++..++.+.. .+++|++++.
T Consensus 330 ~~~~l~~~~gi~v~~g~~~~~~~~---~~~iRis~~~ 363 (391)
T 3h14_A 330 FAAEILEKAGVAVTPGLDFDPERG---AGTLRFSYAR 363 (391)
T ss_dssp HHHHHHHHHCEECEEGGGTCTTTG---GGEEEEECCS
T ss_pred HHHHHHHHCCEEEcCchhhCCCCC---CCeEEEEecC
Confidence 777778777999998766654222 5689999887
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=234.69 Aligned_cols=317 Identities=15% Similarity=0.113 Sum_probs=215.0
Q ss_pred CceeeeecCC---CCcHHHHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 28 NNIELIASEN---YTSLAVMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 28 ~~i~l~a~~n---~l~~~v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
..+.+.++.+ ..++.+.+++.+.+.. +..++..+.+. +......+ +++.+++++|.++.++++ +|++|+.
T Consensus 40 ~~id~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~----l~~~la~~~g~~~~i~~~-sGt~a~~ 113 (384)
T 1bs0_A 40 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQ-FGIGSGGSGHVSGYSVVHQA----LEEELAEWLGYSRALLFI-SGFAANQ 113 (384)
T ss_dssp EEEECSCCCTTSGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCCCHHHHH----HHHHHHHHHTCSEEEEES-CHHHHHH
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHH----HHHHHHHHhCCCcEEEeC-CcHHHHH
Confidence 3466666654 3556699998888753 33233322222 23344444 455888889988666666 8999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC--CeEEEEcCCCCC--c
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK--PKLIIAGASAYS--Q 179 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~--~~liv~~~s~~~--~ 179 (1342)
.++.+++++||.|++....|+ +....+...|. +++.++. .|++++++.+++.. +++++++++++| .
T Consensus 114 ~~~~~~~~~gd~v~~~~~~~~---~~~~~~~~~g~--~~~~~~~-----~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~ 183 (384)
T 1bs0_A 114 AVIAAMMAKEDRIAADRLSHA---SLLEAASLSPS--QLRRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSMDGD 183 (384)
T ss_dssp HHHHHHCCTTCEEEEETTCCH---HHHHHHHTSSS--EEEEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTTTCC
T ss_pred HHHHHhCCCCcEEEEcccccH---HHHHHHHHcCC--CEEEeCC-----CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCC
Confidence 999999999999997765544 44445556676 4455554 38999999988642 567777666655 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhh-cCCC-CCCC-CCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCc
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIA-AGEY-PNPV-PFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~-~~~~-~~~l-~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~ 256 (1342)
..++++|.++|++||++||+|++|+.|.++ .+.. ...+ ...|++++|+||++ ++.|||+++++++++.+......+
T Consensus 184 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~-~~~GG~~~~~~~~~~~l~~~~~~~ 262 (384)
T 1bs0_A 184 SAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF-GVSGAAVLCSSTVADYLLQFARHL 262 (384)
T ss_dssp BCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT-SSCCEEEEECHHHHHHHHHHCHHH
T ss_pred ccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchh-hccCcEEEeCHHHHHHHHHhchhh
Confidence 458999999999999999999999877543 1111 1111 13689999999999 788899999999888877643233
Q ss_pred ccc-CCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 257 IQG-GPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 257 ~~~-~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
..+ +++...++++..++ +...+ +.++..+++.++++++.+.|.+.|+++.. ..++++|+.++......++...++
T Consensus 263 ~~~~~~~~~~~~~~~~al-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~ 339 (384)
T 1bs0_A 263 IYSTSMPPAQAQALRASL-AVIRSDEGDARREKLAALITRFRAGVQDLPFTLAD--SCSAIQPLIVGDNSRALQLAEKLR 339 (384)
T ss_dssp HSSBCCCHHHHHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECS--CCSSBCCEEEESHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHH-HHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccC--CCCCEEEEEeCCHHHHHHHHHHHH
Confidence 333 23333444434344 33332 55678899999999999999998887742 456677887754222345666666
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+ +||.+.++..|+.+.. .+.+|++++..++
T Consensus 340 ~-~gi~v~~~~~~~~~~~---~~~~Ri~~~~~~~ 369 (384)
T 1bs0_A 340 Q-QGCWVTAIRPPTVPAG---TARLRLTLTAAHE 369 (384)
T ss_dssp H-TTEECCEECTTSSCTT---CEEECCBCCTTCC
T ss_pred H-CCcEEEeecCCCCCCC---CceEEEEEcCCCC
Confidence 5 4999998876654322 4679999987544
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-21 Score=232.03 Aligned_cols=311 Identities=14% Similarity=0.135 Sum_probs=219.6
Q ss_pred eeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc
Q psy13354 32 LIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV 109 (1342)
Q Consensus 32 l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al 109 (1342)
..++...+++.+.+++.+.+.+ .|+ ....++.+++++++++++|.+ +.+++++||++|+..++.++
T Consensus 24 ~~~~~~~~~~~v~~a~~~~~~~----------~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l 91 (386)
T 2dr1_A 24 FTAGPVACFPEVLEIMKVQMFS----------HRS--KEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNG 91 (386)
T ss_dssp CCSSSCCCCHHHHHHTTSCCCC----------TTS--HHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHH
T ss_pred ecCCCcCCcHHHHHHHhccccc----------ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHh
Confidence 4566677888888886654421 121 223577888888999999987 55667779999999999999
Q ss_pred cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh-cCCeEEEEcCCCCC--cccCHHHH
Q psy13354 110 LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK-NKPKLIIAGASAYS--QYIDFERF 186 (1342)
Q Consensus 110 ~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~-~~~~liv~~~s~~~--~~~~l~~I 186 (1342)
+++||+|+++...|++. .....+...|. +++.++.+.++.+|++++++.+.+ .+++++++++++++ ...++++|
T Consensus 92 ~~~gd~vl~~~~~~~~~-~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i 168 (386)
T 2dr1_A 92 VSKGGKVLVTIIGAFGK-RYKEVVESNGR--KAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPEL 168 (386)
T ss_dssp SCTTCEEEEEESSHHHH-HHHHHHHHTTC--EEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHH
T ss_pred hcCCCeEEEEcCCchhH-HHHHHHHHhCC--ceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHH
Confidence 99999999877555432 13444566676 455556666788999999999964 35666666665544 44589999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc------------
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA------------ 252 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~------------ 252 (1342)
.++|++||++||+|++|+.|.... +... .+|++++|+||+++++.| |++++++++++.+...
T Consensus 169 ~~l~~~~~~~li~D~a~~~~~~~~----~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (386)
T 2dr1_A 169 AKVAKEHDKLVFVDAVSAMGGADI----KFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLY 244 (386)
T ss_dssp HHHHHHTTCEEEEECTTTBTTBCC----CTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHH
T ss_pred HHHHHHcCCeEEEEccccccCccc----cccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHH
Confidence 999999999999999998765421 1111 369999999999966666 9999999888776320
Q ss_pred ---c--CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC--CCeEEEEEccCCC
Q psy13354 253 ---V--FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRGIRIVSGGT--KSHIILVDLRNKK 324 (1342)
Q Consensus 253 ---~--~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~--~~~~v~i~~~~~~ 324 (1342)
. .....++++.+.+.++..++...... ++++..+++.++++++.+.|.+.|+++..+.. ..+++|+.++...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (386)
T 2dr1_A 245 VKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPGI 324 (386)
T ss_dssp HHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTC
T ss_pred HHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCC
Confidence 0 11223345556666666565544333 47788999999999999999988877644211 3678888887433
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
...++...++++ ||.+.++..+. ..+.+|++++..++
T Consensus 325 ~~~~~~~~l~~~-gi~v~~~~~~~------~~~~iRi~~~~~~~ 361 (386)
T 2dr1_A 325 KGDEVYEAMRKR-GFELAKGYGSV------KEKTFRIGHMGYMK 361 (386)
T ss_dssp CHHHHHHHHHHT-TEECEECCGGG------TTTEEEEECCSSCC
T ss_pred CHHHHHHHHHHC-CeEEecCcccc------CCCEEEEECCCCCC
Confidence 345666666665 99999865332 13579999987555
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=213.45 Aligned_cols=219 Identities=27% Similarity=0.437 Sum_probs=189.9
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
.+|..+|+|..|++++|++.+++.+.+.+..+..++ ++|+||+|+|||++++.+++.+.+..
T Consensus 5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~----------------- 66 (226)
T 2chg_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGEN----------------- 66 (226)
T ss_dssp CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSTTSSHHHHHHHHHHHHHGGG-----------------
T ss_pred hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCe-EEEECCCCCCHHHHHHHHHHHHhccc-----------------
Confidence 368899999999999999999999999999887766 89999999999999999999986421
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhc-Cc-cCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYA-PI-NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~-p~-~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
....++.++.+...+.+.+.+.+...... +. .+.+.+|+|||++.+..+..+.|++++++++..+++|+++
T Consensus 67 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 67 -------WRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp -------GGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred -------cccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 11246677776666666666666555433 22 3567899999999999999999999999988899999999
Q ss_pred CCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHH
Q psy13354 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNS 616 (1342)
Q Consensus 537 ~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~ 616 (1342)
+....+.+++.+|+..+.|.+++.+++.+++..++...+..+++++++.+++.++||+|.+.+.++++..++ +.||.++
T Consensus 140 ~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~-~~I~~~~ 218 (226)
T 2chg_A 140 NYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG-EVVDADT 218 (226)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SCBCHHH
T ss_pred CChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-ceecHHH
Confidence 999899999999999999999999999999999999999999999999999999999999999999988776 6899999
Q ss_pred HHHHhcc
Q psy13354 617 MQEMLSI 623 (1342)
Q Consensus 617 V~~~v~~ 623 (1342)
|+++++.
T Consensus 219 v~~~~~~ 225 (226)
T 2chg_A 219 IYQITAT 225 (226)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9998863
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-22 Score=237.75 Aligned_cols=312 Identities=16% Similarity=0.182 Sum_probs=217.3
Q ss_pred eecCCCC----cHHHHHHHhHHHHhccccCCCCCCc-cCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHH
Q psy13354 33 IASENYT----SLAVMEAQGTLLTNKYAEGYPGKRY-YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 33 ~a~~n~l----~~~v~eal~~~l~~~~~~g~~~~~~-~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~ 107 (1342)
+++++|+ +|.+.+++.+.+. .+..++..+.. ++......++++ ++++++|.+.+++++ +|++|+..++.
T Consensus 64 ~~s~~~l~~~~~p~v~~a~~~~l~-~~~~~~~~~~~~~g~~~~~~~l~~----~la~~~g~~~~i~~~-sGt~a~~~~l~ 137 (409)
T 3kki_A 64 LQSNDYLALANHPLIKARLAKSLL-EEQQSLFMSASFLQNDYDKPMIEK----RLAKFTGFDECLLSQ-SGWNANVGLLQ 137 (409)
T ss_dssp CCCSCTTCCTTCHHHHHHHHHHHH-SCCCCCCSBGGGGCSTTTSCHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHH
T ss_pred eeccCccCCcCCHHHHHHHHHHHH-HcCCCCCccccccCCcHHHHHHHH----HHHHHhCCCeEEEec-chHHHHHHHHH
Confidence 3445653 4669999888885 44333332222 232333344444 889999998877776 99999999999
Q ss_pred HccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHH
Q psy13354 108 SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 108 al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~ 185 (1342)
+++++||.|++....| .+....+...|. ++++++. .|++++++.+.+.+++++++++++++ ...++++
T Consensus 138 ~~~~~gd~Vl~~~~~~---~~~~~~~~~~g~--~~~~~~~-----~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~ 207 (409)
T 3kki_A 138 TICQPNTNVYIDFFAH---MSLWEGARYANA--QAHPFMH-----NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAE 207 (409)
T ss_dssp HHCCTTCEEEEETTSC---HHHHHHHHHTTC--EEEEECT-----TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHH
T ss_pred HhcCCCCEEEECCCcC---HHHHHHHHHcCC--eEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHH
Confidence 9999999999766544 444445556666 4555554 48999999998766788888776665 4558999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcC-C----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccC
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAG-E----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGG 260 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~-~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~ 260 (1342)
|+++|++||++||+||+|+.|.++.. . ..+....+|++++|+||++ ++.||++++++++++.+.....++.+++
T Consensus 208 l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~-~~~gg~v~~~~~~~~~~~~~~~~~~~~~ 286 (409)
T 3kki_A 208 LVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTF-AYRAGAIWCNNEVNRCVPFISYPAIFSS 286 (409)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTT-CSSCEEEEESSSGGGTHHHHCHHHHHSB
T ss_pred HHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhh-CCCceEEEECHHHHHHHHHhCcCccccC
Confidence 99999999999999999987655321 1 0111123689999999999 5558999999988877766444444443
Q ss_pred CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCce
Q psy13354 261 PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANII 340 (1342)
Q Consensus 261 ~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~ 340 (1342)
..++..++++.+..+... ..+++++++.++++++.+.|.+.|+++. ..++++|+.++......++...++++ ||.
T Consensus 287 ~~~~~~~aa~~aal~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-Gv~ 361 (409)
T 3kki_A 287 TLLPYEAAGLETTLEIIE-SADNRRQHLDRMARKLRIGLSQLGLTIR---SESQIIGLETGDERNTEKVRDYLESN-GVF 361 (409)
T ss_dssp CCCHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTTCCCC---CSSSEEEEEEESHHHHHHHHHHHHHT-TEE
T ss_pred CCcHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHcCCccC---CCCCEEEEEeCCHHHHHHHHHHHHHC-Cce
Confidence 334444444444444443 2256788899999999999999888763 36778888886543344566666665 999
Q ss_pred eeeccCCCCCCCccccccccccccccccc
Q psy13354 341 CNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 341 v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+.+...|..+.+ .+++|++++..++.
T Consensus 362 v~~~~~~~~~~~---~~~iRi~~~~~~t~ 387 (409)
T 3kki_A 362 GSVFCRPATSKN---KNIIRLSLNSDVND 387 (409)
T ss_dssp CEEECTTSSCTT---CEEEEEECCTTCCH
T ss_pred EeeeCCCCcCCC---CcEEEEEccCCCCH
Confidence 998776655433 57899999876553
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=235.35 Aligned_cols=316 Identities=20% Similarity=0.237 Sum_probs=214.3
Q ss_pred ceeeeecCCCC----cHHHHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENYT----SLAVMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l----~~~v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.|.+.++ +++ ++.+.+++.+.+. .+..++....+. +......+ +++.+++++|.++.++++ +|++|+.
T Consensus 47 ~id~~~~-~~~g~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~~~~~~----l~~~la~~~g~~~~i~~~-sGs~a~~ 119 (401)
T 1fc4_A 47 VINFCAN-NYLGLANHPDLIAAAKAGMD-SHGFGMASVRFICGTQDSHKE----LEQKLAAFLGMEDAILYS-SCFDANG 119 (401)
T ss_dssp EEECCCS-CTTSCTTCHHHHHHHHHHHH-HHCSCCCSCHHHHCCBHHHHH----HHHHHHHHHTCSEEEEES-CHHHHHH
T ss_pred EEEeecc-CcccccCCHHHHHHHHHHHH-HhCCCCCCCCcccCCcHHHHH----HHHHHHHHhCCCcEEEeC-ChHHHHH
Confidence 3555555 444 5669999888874 443333222221 11333344 555888899988665555 9999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS 178 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~ 178 (1342)
.++.+++++||.|++....|+ +....+...|. +++.++. .|++++++.+++. +++++++++++++
T Consensus 120 ~~~~~~~~~gd~v~~~~~~~~---~~~~~~~~~g~--~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~np 189 (401)
T 1fc4_A 120 GLFETLLGAEDAIISDALNHA---SIIDGVRLCKA--KRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSM 189 (401)
T ss_dssp TTHHHHCCTTCEEEEETTCCH---HHHHHHHTSCS--EEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETT
T ss_pred HHHHHHcCCCCEEEEcchhHH---HHHHHHHHcCC--ceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCC
Confidence 999999999999997775554 33444566676 4555553 3889999988752 5677777776655
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhh-cCCC----CCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhh
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIA-AGEY----PNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~-~~~~----~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~ 251 (1342)
...++++|.++|++||++||+||+|+.|..+ .+.. .+.....|++++|+||+++|+.|||+++++++++.+..
T Consensus 190 tG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~~~~~~~~l~~ 269 (401)
T 1fc4_A 190 DGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQ 269 (401)
T ss_dssp TTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEcCHHHHHHHHH
Confidence 4458999999999999999999999766542 2211 11122368999999999966678999999999888876
Q ss_pred ccCCcccc-CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHH
Q psy13354 252 AVFPGIQG-GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIA 330 (1342)
Q Consensus 252 ~~~~~~~~-~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~ 330 (1342)
...++.++ +.+...++++..++. ... ..++..+++.++++++.+.|.+.|+++. +..++++|+.+++.....++.
T Consensus 270 ~~~~~~~~~~~~~~~~~a~~~~l~-~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~~~~l~ 345 (401)
T 1fc4_A 270 RSRPYLFSNSLAPAIVAASIKVLE-MVE-AGSELRDRLWANARQFREQMSAAGFTLA--GADHAIIPVMLGDAVVAQKFA 345 (401)
T ss_dssp HCHHHHHSCCCCHHHHHHHHHHHH-HHH-TCHHHHHHHHHHHHHHHHHHHHTTCCBC--CSSSSEEEEEEECHHHHHHHH
T ss_pred hCcCceeCCCCCHHHHHHHHHHHH-HHh-cCHHHHHHHHHHHHHHHHHHHHcCCccc--CCCCCEEEEEcCChHHHHHHH
Confidence 43223222 333444444444443 332 2456788999999999999999887764 356788898886422234556
Q ss_pred HHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 331 ESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 331 ~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
..+++ +||.+.++..|+.+.. .+.+|++++..++.
T Consensus 346 ~~l~~-~gi~v~~~~~~~~~~~---~~~iRi~~~~~~~~ 380 (401)
T 1fc4_A 346 RELQK-EGIYVTGFFYPVVPKG---QARIRTQMSAAHTP 380 (401)
T ss_dssp HHHHH-TTEECCEECTTSSCTT---CEEEEEECCTTCCH
T ss_pred HHHHH-CCcEEeeecCCCCCCC---CceEEEEeCCCCCH
Confidence 66655 5999998876655432 45799999876553
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-21 Score=230.19 Aligned_cols=341 Identities=12% Similarity=0.106 Sum_probs=232.2
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRL 82 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~l 82 (1342)
+++++..++..+..+..... ..+.+.+..+.+. .++.+.+++.+.+.. .. ..|+...+..++++++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~------~~y~~~~g~~~l~~~la~~l 80 (386)
T 1u08_A 9 QSKLPQLGTTIFTQMSALAQ-QHQAINLSQGFPDFDGPRYLQERLAHHVAQ-GA------NQYAPMTGVQALREAIAQKT 80 (386)
T ss_dssp CCSCCCCCCCHHHHHHHHHH-HTTCEECCCSSCSSCCCHHHHHHHHHHHHT-TC------CSCCCTTCCHHHHHHHHHHH
T ss_pred chhhhcCCccHHHHHHHHHh-cCCeEEecCCCCCCCCCHHHHHHHHHHHHh-hc------cCCCCCCCCHHHHHHHHHHH
Confidence 34555555555555544332 2456777777643 446699998888753 11 12333344568889888888
Q ss_pred HHHhCCC---C-ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHH
Q psy13354 83 KKIFNAE---A-ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKK 157 (1342)
Q Consensus 83 a~~~g~~---~-~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~ 157 (1342)
.+.+|.+ + .+++++||++|+..++.+++.+||+|++..+.|+++ ...+...|. +++.++.+. ++.+|+++
T Consensus 81 ~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~---~~~~~~~g~--~~~~v~~~~~~~~~d~~~ 155 (386)
T 1u08_A 81 ERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSY---APAIALSGG--IVKRMALQPPHFRVDWQE 155 (386)
T ss_dssp HHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTH---HHHHHHTTC--EEEEEECCTTTCCCCHHH
T ss_pred HHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhH---HHHHHHcCC--EEEEeecCcccCcCCHHH
Confidence 8877743 4 667776999999999999999999999888666543 344566676 444555553 57799999
Q ss_pred HHHHHHhcCCeEEEEcCCCCC-cc-c---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecC
Q psy13354 158 VEYLAKKNKPKLIIAGASAYS-QY-I---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTT 227 (1342)
Q Consensus 158 Le~~i~~~~~~liv~~~s~~~-~~-~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~ 227 (1342)
+++.+++ ++++++++++++| +. . ++++|+++|++||++||+||+|+.+.+.+..+.+... ..|++++|+
T Consensus 156 l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~ 234 (386)
T 1u08_A 156 FAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSF 234 (386)
T ss_dssp HHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEH
T ss_pred HHHhhcc-cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecc
Confidence 9998864 4566666666655 22 2 5799999999999999999999865443222222211 258999999
Q ss_pred CccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCc
Q psy13354 228 HKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304 (1342)
Q Consensus 228 sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~ 304 (1342)
||++ |+.| ||+++++++++.+........++ .+.+.+.++..++... ..++++.++++.++++++.+.|.+.|+
T Consensus 235 sK~~-~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~ 311 (386)
T 1u08_A 235 GKTY-HMTGWKVGYCVAPAPISAEIRKVHQYLTFS-VNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRL 311 (386)
T ss_dssp HHHT-TCGGGCCEEEECCHHHHHHHHHHHHHHTSS-CCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSC
T ss_pred hhhc-CCcccceEEEEcCHHHHHHHHHHHHhhccC-CChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999 6556 99999998888876543222222 3344555555555433 446778889999999999999998888
Q ss_pred EEeeCCCCCeEEEEEccCC--CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 305 RIVSGGTKSHIILVDLRNK--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 305 ~~~~~~~~~~~v~i~~~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++.. +.+++++|+.++.. ..+.++...+++++||.+.++..+.... ...+++|++++.
T Consensus 312 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~--~~~~~iRis~~~ 371 (386)
T 1u08_A 312 EILP-CEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADP--FPHKLIRLCFAK 371 (386)
T ss_dssp EECC-CCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSC--CCSCEEEEECCS
T ss_pred eecC-CCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCC--CCCCEEEEEEcC
Confidence 8754 45578999998754 2345666777777899999865332211 114579999873
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=232.49 Aligned_cols=332 Identities=11% Similarity=0.098 Sum_probs=226.0
Q ss_pred cchHHHHHHHHHHHhccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC-
Q psy13354 11 IDPKIWEIILKEKQRQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN- 87 (1342)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g- 87 (1342)
.+..++....+.- ...+.+.+..+++.+ ++.+.+++.+.+.+ ...+ |+ .+..++++++++++++++|
T Consensus 17 ~g~~~~d~~~~~~-~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~------y~--~~~~~~~~~l~~~l~~~~g~ 86 (391)
T 4dq6_A 17 NFSSKWSEMEKKY-GTNDLLPMWVADMDFKAAPCIIDSLKNRLEQ-EIYG------YT--TRPDSYNESIVNWLYRRHNW 86 (391)
T ss_dssp TTBHHHHCHHHHH-SCSCSEECCSSSCSSCCCHHHHHHHHHHHTT-CCCC------CB--CCCHHHHHHHHHHHHHHHCC
T ss_pred CCceeeeeccccc-CCCCceeccccCCCCCCCHHHHHHHHHHHhC-CCCC------CC--CCCHHHHHHHHHHHHHHhCC
Confidence 3455666543321 124568887776543 46699998887742 1111 11 1235888889999999998
Q ss_pred -CC-CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec--CCCCCCCCHHHHHHHHH
Q psy13354 88 -AE-AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG--LNKKEKIDYKKVEYLAK 163 (1342)
Q Consensus 88 -~~-~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~--~~~~~~id~e~Le~~i~ 163 (1342)
.+ +.+++++||++|+..++.+++++||+|++..+.+ ......+...|..+..++++ .+.++.+|++++++.++
T Consensus 87 ~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 163 (391)
T 4dq6_A 87 KIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVY---SPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIK 163 (391)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCC---THHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT
T ss_pred CCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCC---HHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh
Confidence 33 4566666999999999999999999999766444 44455556677744444333 12446789999999987
Q ss_pred hcCCeEEEEcCCCCC--cc---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC------CcEEEecCCccCC
Q psy13354 164 KNKPKLIIAGASAYS--QY---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF------ADFITSTTHKSLR 232 (1342)
Q Consensus 164 ~~~~~liv~~~s~~~--~~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~------~Divv~S~sK~l~ 232 (1342)
+ +++++++++++| .. .++++|+++|++||++||+||+|+.+.+.+......... ..++++|+||++
T Consensus 164 ~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~- 240 (391)
T 4dq6_A 164 D--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTF- 240 (391)
T ss_dssp T--EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHH-
T ss_pred c--CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhc-
Confidence 6 666666566665 22 469999999999999999999997655433222222111 128899999999
Q ss_pred CCCe---eEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEE
Q psy13354 233 GPRG---GFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRI 306 (1342)
Q Consensus 233 gp~G---G~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~ 306 (1342)
|+.| ||+++++ ++++.+......+..++++.+.+.++..++.. ..++.++..+++.++++++.+.|++. |+.+
T Consensus 241 g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 319 (391)
T 4dq6_A 241 NIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKV 319 (391)
T ss_dssp TCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred cCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEe
Confidence 5555 9999886 88887776433344445555666666555554 33467788899999999999999883 7877
Q ss_pred eeCCCCCeEEEEEccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 307 VSGGTKSHIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.. +.++++.|+.++.. ....++...+++++||.+.++..++... .+++|++++
T Consensus 320 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~----~~~iRis~~ 373 (391)
T 4dq6_A 320 RK-PEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGG----SGYQRINLA 373 (391)
T ss_dssp CC-CSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTC----TTEEEEECC
T ss_pred cC-CCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCC----CCeEEEEEc
Confidence 54 45677888998763 3344566666665599999875544332 367999988
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=231.41 Aligned_cols=314 Identities=17% Similarity=0.134 Sum_probs=215.5
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.+.+..+++. .++.+.+++.+.+.... . .|....+..++++++++++...+|.+ +.+++++||++|
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~------~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~a 103 (385)
T 1b5p_A 31 VDLVALTAGEPDFDTPEHVKEAARRALAQGK-T------KYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQA 103 (385)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-C------SCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhcCC-C------CCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHH
Confidence 456788777653 34568888877764311 1 23333445688888888887776743 456666588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.++++|||+|+++.+.|+. ....+...|. +++.++.+ +++.+|++++++++++ +++++++++++||
T Consensus 104 l~~~~~~l~~~gd~Vlv~~p~y~~---~~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPt 177 (385)
T 1b5p_A 104 LFNLFQAILDPGDEVIVLSPYWVS---YPEMVRFAGG--VVVEVETLPEEGFVPDPERVRRAITP-RTKALVVNSPNNPT 177 (385)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTH---HHHHHHHTTC--EEEEEECCGGGTTCCCHHHHHTTCCT-TEEEEEEESSCTTT
T ss_pred HHHHHHHhcCCCCEEEEcCCCchh---HHHHHHHcCC--EEEEeecCcccCCCCCHHHHHHhcCC-CCEEEEEeCCCCCC
Confidence 999999999999999988866543 4445566677 44445555 3568999999998865 3566666566666
Q ss_pred cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC---CCcEEEecCCccCCCCCe---eEEEEechhHHH
Q psy13354 179 QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP---FADFITSTTHKSLRGPRG---GFILMKKKYKKI 248 (1342)
Q Consensus 179 ~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~---~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~ 248 (1342)
+. .++++|+++|++||++||+|++|+.+.+.+ .+.+... ..+++++|+||++ |+.| ||+++++++++.
T Consensus 178 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~~~~~ 255 (385)
T 1b5p_A 178 GAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAPEHTLTVNGAAKAF-AMTGWRIGYACGPKEVIKA 255 (385)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCTTTEEEEEESTTTT-TCGGGCCEEEECCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcCCCCEEEEEechhhc-CCcccceEEEEeCHHHHHH
Confidence 22 359999999999999999999998654432 2221111 2468899999999 6556 999999988888
Q ss_pred HhhccCCccccCCcHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCC-
Q psy13354 249 INSAVFPGIQGGPLMHVIAAKAVAFKE--VLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKI- 325 (1342)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~Aaa~al~~--~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~- 325 (1342)
+......+..+ ++.+.+.++..++.. ....++++.++++.++++++.+.|.+.|+.+.. +.+++++|+.++..+.
T Consensus 256 l~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~ 333 (385)
T 1b5p_A 256 MASVSRQSTTS-PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVR-PSGAFYVLMDTSPIAPD 333 (385)
T ss_dssp HHHHHHTTTCS-CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CSBTTEEEEECTTTCSS
T ss_pred HHHHHhhccCC-CCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecC-CCeeEEEEEecCCCCCC
Confidence 76643333223 335555555444432 022367778899999999999999888877543 4566788888863232
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
..++...++ ++||.+.++..++. .+++|++++
T Consensus 334 ~~~l~~~l~-~~gv~v~~g~~f~~------~~~iRis~~ 365 (385)
T 1b5p_A 334 EVRAAERLL-EAGVAVVPGTDFAA------FGHVRLSYA 365 (385)
T ss_dssp HHHHHHHHH-HTTEECEESGGGTC------TTEEEEECC
T ss_pred HHHHHHHHH-HCCeEEecccccCC------CCeEEEEec
Confidence 345666666 67999998755432 247999987
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-21 Score=230.93 Aligned_cols=315 Identities=13% Similarity=0.064 Sum_probs=218.8
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC--ceEecCCHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA--ANVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~--~vi~~~sGs~A~~~a 105 (1342)
..+.+.+++...++.+++++.+.+.. .+ ..........+++++++++|.+. .+++++||++|+..+
T Consensus 19 ~~~~~~~g~~~~~~~v~~a~~~~~~~----------~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~ 86 (393)
T 2huf_A 19 NKLLMGPGPSNAPQRVLDAMSRPILG----------HL--HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT 86 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHTTSCCCC----------TT--SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred CeEEecCCCCCCCHHHHHHHHhhhcc----------CC--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence 34666777777888888887655421 11 12234566667789999999874 577777999999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
+.+++.+||+|+++...|++.. ........|. +++.++.++++.+|++++++.+++.++++|++++++++ ...++
T Consensus 87 ~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 163 (393)
T 2huf_A 87 LCNLLEDGDVILIGHTGHWGDR-SADMATRYGA--DVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGL 163 (393)
T ss_dssp HHHHCCTTCEEEEEESSHHHHH-HHHHHHHTTC--EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred HHHHhCCCCEEEEECCCcchHH-HHHHHHHcCC--eeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCH
Confidence 9999999999998876654421 2223345676 44555666677899999999998634566666565554 44589
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc---cCCc--
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA---VFPG-- 256 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~---~~~~-- 256 (1342)
++|+++|++||++||+|++|+.|.... .... ..|++++|+||+++|+.| |++++++++++.+... ..++
T Consensus 164 ~~i~~~~~~~~~~li~D~a~~~~~~~~----~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T 2huf_A 164 EGVGALCHQHNCLLIVDTVASLGGAPM----FMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYW 239 (393)
T ss_dssp TTHHHHHHHTTCEEEEECTTTBTTBCC----CTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGG
T ss_pred HHHHHHHHHcCCEEEEEcccccCCCCc----chhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEE
Confidence 999999999999999999987654311 1111 369999999999878888 9999999988887653 1121
Q ss_pred -----------------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC--CCCeEEE
Q psy13354 257 -----------------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG--TKSHIIL 317 (1342)
Q Consensus 257 -----------------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~--~~~~~v~ 317 (1342)
..++++.....++..++......++++..+++.++++++.+.|.+.|+++..+. ...++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~ 319 (393)
T 2huf_A 240 DMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTT 319 (393)
T ss_dssp CHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEE
T ss_pred chHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEE
Confidence 123455555555555555443335778889999999999999998887764421 1234778
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
+.++......++...+++++||.+.++..+. ..+++|++++..+
T Consensus 320 ~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~------~~~~~Ri~~~~~~ 363 (393)
T 2huf_A 320 IKVPQGVDWLKAAQYAMKTYLVEISGGLGPT------AGQVFRIGLMGQN 363 (393)
T ss_dssp EECCTTCCHHHHHHHHHHHHCEECBCCCGGG------TTTEEEEECCGGG
T ss_pred EEcCCCCCHHHHHHHHHHhCCEEEecCcccc------cCCEEEEEcccCc
Confidence 8876433345666677666799998654321 1357999995543
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=233.92 Aligned_cols=337 Identities=13% Similarity=0.095 Sum_probs=226.1
Q ss_pred ccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 8 LSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
++..++.....+.....+..+.+.+..+.+. .++.+.+++.+.+... .. .|+...+..++++++++++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~------~y~~~~g~~~l~~~la~~~~~~ 79 (389)
T 1gd9_A 7 LELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKG-LT------HYGPNIGLLELREAIAEKLKKQ 79 (389)
T ss_dssp HHHSCCCHHHHHHHHHHTCSSCEECCCCSCSSCCCHHHHHHHHHHHHTT-CC------SCCCTTCCHHHHHHHHHHHHHH
T ss_pred hHhCChhHHHHHHHHHhhhcCeEecCCCCCCCCCCHHHHHHHHHHHhCC-CC------CCCCCCCcHHHHHHHHHHHHHH
Confidence 3333333333333333333456788777654 3556889888877531 11 1333344568888888888777
Q ss_pred hCC--C-Cc-eEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--CCCCCHHHHH
Q psy13354 86 FNA--E-AA-NVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--KEKIDYKKVE 159 (1342)
Q Consensus 86 ~g~--~-~~-vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--~~~id~e~Le 159 (1342)
+|. + +. +++++||++|+..++.+++.+||+|++....|+++ ...+...|.. ++.++.++ ++.+|+++++
T Consensus 80 ~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~---~~~~~~~g~~--~~~v~~~~~~~~~~d~~~l~ 154 (389)
T 1gd9_A 80 NGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSY---APAVILAGGK--PVEVPTYEEDEFRLNVDELK 154 (389)
T ss_dssp HCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTH---HHHHHHHTCE--EEEEECCGGGTTCCCHHHHH
T ss_pred hCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhH---HHHHHHCCCE--EEEeccCCccCCCCCHHHHH
Confidence 784 2 34 66666999999999999999999999888666554 3444556764 44445543 4678999999
Q ss_pred HHHHhcCCeEEEEcCCCCC-ccc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-----CCCcEEEecCCc
Q psy13354 160 YLAKKNKPKLIIAGASAYS-QYI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-----PFADFITSTTHK 229 (1342)
Q Consensus 160 ~~i~~~~~~liv~~~s~~~-~~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-----~~~Divv~S~sK 229 (1342)
+.+++ ++++++++++++| +.. ++++|+++|++||++||+|++|+.+.+.+....+.. ...|++++|+||
T Consensus 155 ~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 233 (389)
T 1gd9_A 155 KYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSK 233 (389)
T ss_dssp HHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTT
T ss_pred HhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChh
Confidence 98875 4566666666665 222 599999999999999999999987655322122211 125799999999
Q ss_pred cCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHhCCc
Q psy13354 230 SLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKP--DFKIYQKQVVKNAKILSKILDQRGI 304 (1342)
Q Consensus 230 ~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~--~~~~~~~~l~~~a~~l~~~L~~~g~ 304 (1342)
++ |+.| ||+++++++++.+......+.++ ++.+.+.++..++. .... ++++.++++.++++++.+.|.+.|+
T Consensus 234 ~~-~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 310 (389)
T 1gd9_A 234 TF-AMTGWRLGFVAAPSWIIERMVKFQMYNATC-PVTFIQYAAAKALK-DERSWKAVEEMRKEYDRRRKLVWKRLNEMGL 310 (389)
T ss_dssp TT-TCGGGCCEEEECCHHHHHHHHHHHTTTTCS-CCHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hc-CCcccceEEEEECHHHHHHHHHHHhhhccC-CCHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99 6566 99999999988887644433333 33445555444433 2222 5677888999999999999998887
Q ss_pred EEeeCCCCCeEEEEEccC-CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 305 RIVSGGTKSHIILVDLRN-KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 305 ~~~~~~~~~~~v~i~~~~-~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++.. +.+++++|+.++. .....++...+++++||.+.++..++.. ..+++|++++.
T Consensus 311 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~----~~~~iRi~~~~ 367 (389)
T 1gd9_A 311 PTVK-PKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKA----GEGYVRISYAT 367 (389)
T ss_dssp CCCC-CCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGG----GTTBEEEECCS
T ss_pred eecC-CCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCC----CCCeEEEEecC
Confidence 7643 4456788888864 2234466667765779999987654421 13579999875
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-21 Score=229.31 Aligned_cols=318 Identities=15% Similarity=0.105 Sum_probs=222.4
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCc--eEecCCHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAA--NVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~--vi~~~sGs~A~~~a 105 (1342)
..+.+.+++..+++.+.+++.+... + .......++.+++++++++++|.+.. +++++||++|+..+
T Consensus 11 ~~~~~~p~p~~~~~~v~~a~~~~~~-----~-------~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~ 78 (416)
T 3isl_A 11 LRTIMTPGPVEVDPRVLRVMSTPVV-----G-------QFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAV 78 (416)
T ss_dssp CCEECSSSSCCCCHHHHHHTTSCCC-----C-------TTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHH
T ss_pred cceeecCCCcCcCHHHHHHhcccCC-----C-------CccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHH
Confidence 3455667777788877777544210 0 11123356667788899999998743 33676999999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
+.+++.|||+|+++...+.+.. ....+...|. +++.++.+.++.+|++++++++++.++++|++++++++ ...++
T Consensus 79 ~~~l~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 155 (416)
T 3isl_A 79 LASVIEPEDDVLIPIYGRFGYL-LTEIAERYGA--NVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPL 155 (416)
T ss_dssp HHHHCCTTCEEEEEESSHHHHH-HHHHHHHTTC--EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred HHHhcCCCCEEEEecCCcccHH-HHHHHHhcCC--eeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCH
Confidence 9999999999998775443311 3344566677 45555666778899999999998545677776665555 44589
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---------
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--------- 253 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--------- 253 (1342)
++|.++|++||++||+|++|+.|...... ....+|++++|+||++.|+.| |++++++++++.+....
T Consensus 156 ~~i~~l~~~~~~~li~D~a~~~~~~~~~~---~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~ 232 (416)
T 3isl_A 156 KAIGEACRTEDALFIVDAVATIGGCEVKV---DEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQ 232 (416)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTSCCCT---TTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC----------
T ss_pred HHHHHHHHHcCCEEEEECCccccCCCcch---hhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhcccccccccccc
Confidence 99999999999999999999876542111 011369999999999768888 99999999888776421
Q ss_pred ----------------------------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcE
Q psy13354 254 ----------------------------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIR 305 (1342)
Q Consensus 254 ----------------------------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~ 305 (1342)
..+..++++.....++..++......++++..+++.++++++.+.|.+.|++
T Consensus 233 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~ 312 (416)
T 3isl_A 233 ADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLR 312 (416)
T ss_dssp --------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 1222345556666666556554444347888999999999999999998887
Q ss_pred EeeCCC--CCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 306 IVSGGT--KSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 306 ~~~~~~--~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+..+.. ..+++++.++......++...+++++||.+.++..+. ..+++|++++...+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~------~~~~iRi~~~~~~~~ 372 (416)
T 3isl_A 313 LFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPL------AGKIWRIGTMGYSCR 372 (416)
T ss_dssp BCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTT------TTTEEEEECCGGGCS
T ss_pred eccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCC------CCCEEEEecccCCCc
Confidence 654221 1467888886544455677777776699998764222 245799999776553
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=233.67 Aligned_cols=317 Identities=12% Similarity=0.119 Sum_probs=220.2
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CC-CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AE-AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~-~~vi~~~sGs~A 101 (1342)
++.|.+..+++. .++.+.+++.+.+.+ ...+|+ .. ..++++++++++++.+| .+ +.+++++||++|
T Consensus 27 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~y~------~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a 97 (391)
T 3dzz_A 27 EKELPMWIAEMDFKIAPEIMASMEEKLKV-AAFGYE------SV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPA 97 (391)
T ss_dssp TTCEECCSSCCSSCCCHHHHHHHHHHHTT-CCCCCB------CC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhc-CcCCCC------CC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHH
Confidence 356888777644 345699998887743 111221 11 35888889999999988 33 566666699999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC---CCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL---NKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~---~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
+..++.+++.+||+|++....| .+....+...|. +++.++. +.++.+|++++++++++.++++++++++++|
T Consensus 98 ~~~~~~~l~~~gd~vl~~~~~~---~~~~~~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~np 172 (391)
T 3dzz_A 98 ISAMVRQFTSPGDQILVQEPVY---NMFYSVIEGNGR--RVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNP 172 (391)
T ss_dssp HHHHHHHHSCTTCEEEECSSCC---HHHHHHHHHTTC--EEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTT
T ss_pred HHHHHHHhCCCCCeEEECCCCc---HHHHHHHHHcCC--EEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCC
Confidence 9999999999999999766444 444555566777 4555555 3345689999999998556777766666665
Q ss_pred --cc---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC----CCc--EEEecCCccCCCCCe---eEEEEe-c
Q psy13354 179 --QY---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----FAD--FITSTTHKSLRGPRG---GFILMK-K 243 (1342)
Q Consensus 179 --~~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----~~D--ivv~S~sK~l~gp~G---G~iv~~-~ 243 (1342)
.. .++++|+++|++||++||+|++|+.+.+.+..+.+... ..| ++++|+||++ |+.| |+++++ +
T Consensus 173 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~-g~~G~r~G~~~~~~~ 251 (391)
T 3dzz_A 173 IGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTF-NLAALHAACAIIPNP 251 (391)
T ss_dssp TTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHH-TCTTTCCEEEECCSH
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhc-cccchhheEEEECCH
Confidence 22 47999999999999999999999865543322222211 145 8899999998 5444 999997 7
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEEcc
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVDLR 321 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~~~ 321 (1342)
++++.+..........+++.+.+.++..++.. ...+.++..+++.++++++.+.|.+. |+.+.. +.+++++|+.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 329 (391)
T 3dzz_A 252 DLRARAEESFFLAGIGEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLD-SNASYLAWVDIS 329 (391)
T ss_dssp HHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC-CCBSSEEEEECG
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec-cCceEEEEEehh
Confidence 88887765432222223334455555555544 33467888899999999999999984 787754 456778889887
Q ss_pred CCC-CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 322 NKK-ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 322 ~~~-~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
..+ ...++...+++++||.+.++..++... .+++|++++
T Consensus 330 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~----~~~iRis~~ 369 (391)
T 3dzz_A 330 ALGMNAEDFCKYLREKTGLIISAGNGYRGNG----HEFVRINLA 369 (391)
T ss_dssp GGCSCHHHHHHHHHHHHCEECEESGGGCTTG----GGEEEEECC
T ss_pred hcCCCHHHHHHHHHHhCCEEEeCchhhCCCC----CCEEEEEec
Confidence 643 344666666666799999875544332 467999988
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-21 Score=224.34 Aligned_cols=311 Identities=14% Similarity=0.123 Sum_probs=215.2
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al 106 (1342)
+.+.+++...++.+++++.+.+.. ++ .....+....+++++++++|.+ +.+++++||++|+..++
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~----------~~--~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~ 69 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRG----------HL--DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGL 69 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCC----------TT--CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHhccccc----------cc--CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHH
Confidence 456788888888888887655421 01 1222345666778999999984 55677779999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
.++++ |+|+++...++++ .........|.. ++.++.++++.+|++++++.+++.++++++++++++| ...+++
T Consensus 70 ~~~~~--d~vl~~~~~~~~~-~~~~~~~~~g~~--~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~ 144 (353)
T 2yrr_A 70 ANLDR--GPVLVLVNGAFSQ-RVAEMAALHGLD--PEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAE 144 (353)
T ss_dssp HTCSC--CCEEEEECSHHHH-HHHHHHHHTTCC--EEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHH
T ss_pred HHhcC--CcEEEEcCCCchH-HHHHHHHHcCCc--eEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHH
Confidence 99876 8898877555544 233344566774 4445666678899999999998745666666666555 445899
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhh-c--------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINS-A-------- 252 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~-~-------- 252 (1342)
+|.++|++||++||+|++|+.|... . .+. .+|++++|+||+++|+.| |++++++++++.+.. .
T Consensus 145 ~i~~l~~~~~~~li~D~a~~~~~~~----~-~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~ 219 (353)
T 2yrr_A 145 AIGALAKEAGALFFLDAVTTLGMLP----F-SMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLAR 219 (353)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTSC----C-CHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHH
T ss_pred HHHHHHHHcCCeEEEEcCccccccc----c-cccccCceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHH
Confidence 9999999999999999999755331 1 111 258999999999878788 999999988876641 0
Q ss_pred ----c-CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC-CCeEEEEEccCCCCC
Q psy13354 253 ----V-FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT-KSHIILVDLRNKKIT 326 (1342)
Q Consensus 253 ----~-~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~-~~~~v~i~~~~~~~~ 326 (1342)
. .....++++.+.+.++..++......++++..+++.++++++.+.|++.|+++..++. .++++++.++.....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 299 (353)
T 2yrr_A 220 VAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEGVDA 299 (353)
T ss_dssp HHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCTTCCH
T ss_pred HhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCCCCCH
Confidence 0 1222334455555555555544433347788899999999999999988888755221 456778887643334
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.++...+.+ +||.+.++..+.. .+++|++++..++.
T Consensus 300 ~~~~~~l~~-~gi~v~~g~~~~~------~~~iRi~~~~~~~~ 335 (353)
T 2yrr_A 300 DRLVRALYA-EGVAVAGGIGPTR------GQVLRLGLMGEGAR 335 (353)
T ss_dssp HHHHHHHHH-TTEECEECCGGGT------TTCEEEECSGGGSC
T ss_pred HHHHHHHHH-CCEEEeCCccccC------CCeEEEecCccCCH
Confidence 455555555 5999987653321 35699999766554
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-21 Score=227.24 Aligned_cols=313 Identities=13% Similarity=0.085 Sum_probs=219.4
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-C-ceEecCCHHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-A-ANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~-~vi~~~sGs~A~~~al~ 107 (1342)
+.+.++....++.+.+++.+.+.+ .|+ ....++.+++++++++++|.+ + .+++++||++|+..++.
T Consensus 36 ~l~~~~~~~~~~~v~~a~~~~~~~----------~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~ 103 (393)
T 1vjo_A 36 LLLGPGPSNAHPSVLQAMNVSPVG----------HLD--PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIA 103 (393)
T ss_dssp EECSSSCCCCCHHHHHHHSSCCCC----------TTS--HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHH
T ss_pred eeccCCCCCCCHHHHHHHhccccc----------ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHH
Confidence 445566677888888887665421 121 224567778888999999987 4 57777799999999999
Q ss_pred HccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHH
Q psy13354 108 SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 108 al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~ 185 (1342)
+++.+||+|++....+++. .....+...|. +++.++.+.++.+|++++++.+++.+++++++++++++ ...++++
T Consensus 104 ~~~~~gd~Vl~~~~~~~~~-~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~ 180 (393)
T 1vjo_A 104 NAVEPGDVVLIGVAGYFGN-RLVDMAGRYGA--DVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEG 180 (393)
T ss_dssp HHCCTTCEEEEEESSHHHH-HHHHHHHHTTC--EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred hccCCCCEEEEEcCChhHH-HHHHHHHHcCC--ceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHH
Confidence 9999999999877555431 14445566677 45555666678899999999998634556666665555 4458999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-CCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc---cCC-----
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-PFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA---VFP----- 255 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~---~~~----- 255 (1342)
|+++|+++|++||+|++|+.|... .... ..+|++++|+||+++++.| |++++++++++.+... ..+
T Consensus 181 i~~l~~~~~~~li~Dea~~~g~~~----~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 256 (393)
T 1vjo_A 181 VGELCREFGTLLLVDTVTSLGGVP----IFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDM 256 (393)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTSC----CCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCH
T ss_pred HHHHHHHcCCEEEEECCccccCcC----CcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCc
Confidence 999999999999999999865331 1111 1369999999999977667 9999999988887532 111
Q ss_pred -----------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC--CCeEEEEEccC
Q psy13354 256 -----------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT--KSHIILVDLRN 322 (1342)
Q Consensus 256 -----------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~--~~~~v~i~~~~ 322 (1342)
+..++++.+.+.++..++......++++.++++.++++++.+.|.+.|+++..+.. ..+++++.++.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 336 (393)
T 1vjo_A 257 NLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPD 336 (393)
T ss_dssp HHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCT
T ss_pred HhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCC
Confidence 11225556666666666655434457788999999999999999988877644211 23577887754
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
.....++...+++++||.+.++..+.. .+.+|+++...+
T Consensus 337 ~~~~~~~~~~l~~~~gi~v~~g~~~~~------~~~iRis~~~~~ 375 (393)
T 1vjo_A 337 GVDGKAVARRLLNEHNIEVGGGLGELA------GKVWRVGLMGFN 375 (393)
T ss_dssp TCCHHHHHHHHHHHHCEECEECCGGGT------TTEEEEECCGGG
T ss_pred CCCHHHHHHHHHhhCCEEEecCccccC------CCEEEEeCCccC
Confidence 333456666666655999998653322 356999965443
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.6e-21 Score=225.64 Aligned_cols=312 Identities=18% Similarity=0.140 Sum_probs=216.8
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC---ceEecCCHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA---ANVQPHSGSQANQAVF 106 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~---~vi~~~sGs~A~~~al 106 (1342)
+.+.+++..+++.+++++.+.+.. + ......++.+.+++++++++|.+. .+++++||++|+. ++
T Consensus 4 ~~~~~gp~~~~~~v~~a~~~~~~~-----~-------~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~ 70 (384)
T 3zrp_A 4 LLLHVGPTTIKEDVLVAGLENNVG-----F-------TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SV 70 (384)
T ss_dssp --CCSSCSCCCHHHHHHTTCCSCC-----T-------TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HG
T ss_pred eeccCCCCCCCHHHHHHhhccccc-----c-------ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HH
Confidence 446778888888898887655421 0 112234566678889999999874 3566669999999 99
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
.+++++||+|+++...+.+. .........|. +++.++.+.++.+|++++++.+++.+++++++++++++ ...+++
T Consensus 71 ~~~~~~gd~vi~~~~~~~~~-~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~ 147 (384)
T 3zrp_A 71 TSLLKPNDKILVVSNGVFGD-RWEQIFKRYPV--NVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVK 147 (384)
T ss_dssp GGGCCTTCEEEEECSSHHHH-HHHHHHTTSSC--EEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHH
T ss_pred HhhcCCCCEEEEecCCcchH-HHHHHHHHcCC--cEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHH
Confidence 99999999999876543221 12233355566 55666777778899999999998866777777666555 455899
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHH-hh-----------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKII-NS----------- 251 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l-~~----------- 251 (1342)
+|.++|++||++||+|++|+.+...... ....+|++++|+||+++|+.| |++++++++++.+ ..
T Consensus 148 ~i~~l~~~~~~~li~D~a~~~~~~~~~~---~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (384)
T 3zrp_A 148 DVINKIRKYVELIVVDGVSSVGAEEVKA---EEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLR 224 (384)
T ss_dssp HHHHHHGGGEEEEEEECTTTTTTSCCCT---TTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHH
T ss_pred HHHHHHHhcCCEEEEECcccccCccccc---cccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHH
Confidence 9999999999999999999876542111 001369999999999977777 9999999887776 11
Q ss_pred -cc---------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC---CCCeEEEE
Q psy13354 252 -AV---------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG---TKSHIILV 318 (1342)
Q Consensus 252 -~~---------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~---~~~~~v~i 318 (1342)
.. ....+++++.....++..++......+++++.+++.++++++.+.|.+.|+++..+. ...+++++
T Consensus 225 ~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 304 (384)
T 3zrp_A 225 NWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGV 304 (384)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEE
T ss_pred HHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEE
Confidence 00 111123555556666555555444445788899999999999999999887765422 13567788
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.++. ....++...+.+ +||.+.++..+.. +++|+++...++.
T Consensus 305 ~~~~-~~~~~~~~~l~~-~gi~v~~g~~~~~-------~~iRi~~~~~~~~ 346 (384)
T 3zrp_A 305 ILKV-ADPQKVLAGTVN-EGVEFAPGVHPAF-------KYFRIGHMGWVTP 346 (384)
T ss_dssp ECSS-SCHHHHHHHHHT-TTCCCEECCCTTC-------CEEEEECCSSCCH
T ss_pred ECCC-CCHHHHHHHHHH-CCEEEecCCCCCc-------CEEEEeccccCCH
Confidence 8876 334455555555 5999987642111 4699998876553
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=232.99 Aligned_cols=320 Identities=14% Similarity=0.111 Sum_probs=225.1
Q ss_pred ccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCCHHH
Q psy13354 26 QNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHSGSQ 100 (1342)
Q Consensus 26 ~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~sGs~ 100 (1342)
.++.|.+..+.+. .+|.+.+++.+.+.. ...+|+ . ...++++++++++++.+|. + +.+++++||++
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~y~------~--~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~e 130 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGRE-HIFGYN------Y--FNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVP 130 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHH-CCSSCB------C--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhc-CCcCCC------C--CCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHH
Confidence 3466888777643 346699998888753 111221 1 1257888899999999883 3 55677769999
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec-CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG-LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~-~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
|+..++.+++.+||+|++....+++ ....+...|..+..+++. .+.++.+|++++++++++.+++++++++++++
T Consensus 131 a~~~a~~~~~~~gd~Vi~~~~~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~npt 207 (421)
T 3l8a_A 131 AISIALQAFSEKGDAVLINSPVYYP---FARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPG 207 (421)
T ss_dssp HHHHHHHHHSCTEEEEEEEESCCHH---HHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTT
T ss_pred HHHHHHHHhcCCCCEEEECCCCcHH---HHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCC
Confidence 9999999999999999987755544 444555667755555443 23456789999999998556677777766666
Q ss_pred c-c---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC------CCcEEEecCCccCCCCCe---eEEEEe-ch
Q psy13354 179 Q-Y---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP------FADFITSTTHKSLRGPRG---GFILMK-KK 244 (1342)
Q Consensus 179 ~-~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~------~~Divv~S~sK~l~gp~G---G~iv~~-~~ 244 (1342)
+ . .++++|+++|++||++||+||+|+.+...+..+..... ..++++.|+||++ |+.| |+++++ ++
T Consensus 208 G~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~~~G~~~~~~~~ 286 (421)
T 3l8a_A 208 GRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTF-NIAGTKNSFAIIQNES 286 (421)
T ss_dssp TBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHH-TCGGGCCEEEECCSHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhc-cCchhheEeEEcCCHH
Confidence 2 2 37999999999999999999999765443322221111 1348899999999 5445 999988 78
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
+++.+......+.+++++...++++.+++.. ..+++++..+++.++++++.+.|++. ++.+.. +.++++.|++++..
T Consensus 287 l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~-~~~~~~~~v~~~~~ 364 (421)
T 3l8a_A 287 LRRKFQYRQLANNQHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVME-PEGTYLVWLDFSAY 364 (421)
T ss_dssp HHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEEC-CSBSSEEEEECGGG
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeC-CCeeEEEEEecccc
Confidence 8887766443334444555666666555554 34467888899999999999999884 787754 56678888998763
Q ss_pred -CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 324 -KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 324 -~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
....++...+++++||.+.++..++.. ..+.+|++++
T Consensus 365 ~~~~~~l~~~l~~~~gi~v~~g~~f~~~----~~~~iRi~~~ 402 (421)
T 3l8a_A 365 AIAQPQLSEKLQNEAKVVLNDGAHFGKE----GKYFARLNVA 402 (421)
T ss_dssp TCCTTHHHHHHHHTTCEECEEGGGGCGG----GTTEEEEECC
T ss_pred CCCHHHHHHHHHHhCCEEEECchhhCCC----CCCEEEEEec
Confidence 234577777777789999987554422 1467999987
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=231.25 Aligned_cols=319 Identities=9% Similarity=0.004 Sum_probs=217.3
Q ss_pred ceeeeecC-C--CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHHH
Q psy13354 29 NIELIASE-N--YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQA 101 (1342)
Q Consensus 29 ~i~l~a~~-n--~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~A 101 (1342)
.|.+..++ + ..++.+++++.+.+......+ |+...+..++.+++++++++++|.+ +.+++++||++|
T Consensus 41 ~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~------y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a 114 (407)
T 3nra_A 41 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQA------YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGA 114 (407)
T ss_dssp CEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHH------SCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred eeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCC------cCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHH
Confidence 46665533 3 234459999888875322112 2223344578888888999999973 456666588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC----CCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL----NKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~----~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
+..++.+++.+||+|++..+.|. +....+...|..+..+++.. ++++.+|++++++.+++ ++++++++++++
T Consensus 115 ~~~~~~~l~~~gd~vl~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~n 190 (407)
T 3nra_A 115 LFLAVAATVARGDKVAIVQPDYF---ANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARVFLFSNPNN 190 (407)
T ss_dssp HHHHHHTTCCTTCEEEEEESCCT---HHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEEESSCT
T ss_pred HHHHHHHhCCCCCEEEEcCCccc---chHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-CCcEEEEcCCCC
Confidence 99999999999999998775544 44555667777544444321 36788999999999987 445554445555
Q ss_pred C--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C----CCCcEEEecCCccCCCCCe---eEEEEec
Q psy13354 178 S--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V----PFADFITSTTHKSLRGPRG---GFILMKK 243 (1342)
Q Consensus 178 ~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l----~~~Divv~S~sK~l~gp~G---G~iv~~~ 243 (1342)
| ...+ +++|+++|++||++||+|++|+.+.+.+..+... + ...+++++|+||++ |+.| ||+++++
T Consensus 191 ptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~ 269 (407)
T 3nra_A 191 PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTE-SLSGYRLGVAFGSR 269 (407)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTT-CCGGGCCEEEEECH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCccccc-CCCeeeEEEEEcCH
Confidence 5 3335 9999999999999999999998765543222211 1 12358899999999 6555 9999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccC
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~ 322 (1342)
++++.+......+.+++ +...+.++..++ +....++++..+++.++++++.+.|.+. ++.+.. +.+++++|+.++.
T Consensus 270 ~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~ 346 (407)
T 3nra_A 270 AIIARMEKLQAIVSLRA-AGYSQAVLRGWF-DEAPGWMEDRIARHQAIRDELLHVLRGCEGVFART-PQAGSYLFPRLPK 346 (407)
T ss_dssp HHHHHHHHHHHHHTSSS-CHHHHGGGGGTT-CCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCC-CSBSSEECCBCCC
T ss_pred HHHHHHHHHHhhhccCC-ChHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHhcCCCceecc-CCeeEEEEEeCCC
Confidence 99888876544444433 233333333222 2222467788889999999999999987 776643 4556888988876
Q ss_pred CC-CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 323 KK-ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 323 ~~-~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.. ...++...+++++||.+.++..+.... .+++|++++.
T Consensus 347 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~----~~~iRis~~~ 386 (407)
T 3nra_A 347 LAVAPAEFVKILRLQAGVVVTPGTEFSPHT----ADSVRLNFSQ 386 (407)
T ss_dssp BSSCHHHHHHHHHHHHCEECEEGGGTCTTC----TTBEEEECCS
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchhhCCCC----CCEEEEEeCC
Confidence 33 344666666676799999876554322 4679999874
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-21 Score=229.76 Aligned_cols=311 Identities=13% Similarity=0.110 Sum_probs=211.8
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHccC
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLN 111 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~~ 111 (1342)
.++....++.+++++.+.+.+ .+ ..........+++++++++|.+ +.+++++||++|+..++.++++
T Consensus 14 ~~~~~~~~~~v~~a~~~~~~~----------~~--~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~ 81 (392)
T 2z9v_A 14 TAGPVNAYPEVLRGLGRTVLY----------DY--DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLIS 81 (392)
T ss_dssp SSSCCCCCHHHHHHTTSCCCC----------TT--SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCC
T ss_pred cCCCcCCCHHHHHHHhccccc----------cc--cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcC
Confidence 345566777888887655421 01 1122344555777999999986 5667777999999999999999
Q ss_pred CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh-cCCeEEEEcCCCCC--cccCHHHHHH
Q psy13354 112 PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK-NKPKLIIAGASAYS--QYIDFERFYH 188 (1342)
Q Consensus 112 pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~-~~~~liv~~~s~~~--~~~~l~~I~~ 188 (1342)
+||+|+++...+++.. ........|.. ++.++.++++.+|++++++.+++ .+++++++++++++ ...++++|.+
T Consensus 82 ~gd~Vl~~~~~~~~~~-~~~~~~~~g~~--~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~ 158 (392)
T 2z9v_A 82 PDDVVLNLASGVYGKG-FGYWAKRYSPH--LLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGA 158 (392)
T ss_dssp TTCCEEEEESSHHHHH-HHHHHHHHCSC--EEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHH
T ss_pred CCCEEEEecCCcccHH-HHHHHHHcCCc--eEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHH
Confidence 9999998876554432 22333445664 44556666678999999999964 35667777665555 4458999999
Q ss_pred HHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc-------------
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV------------- 253 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~------------- 253 (1342)
+|++||++||+|++|+.|.... .... .+|++++|+||++.|+.| |++++++++++.++...
T Consensus 159 l~~~~~~~li~D~a~~~g~~~~----~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 234 (392)
T 2z9v_A 159 LVSAHGAYLIVDAVSSFGGMKT----HPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDW 234 (392)
T ss_dssp HHHHTTCEEEEECTTTBTTBSC----CGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGG
T ss_pred HHHHcCCeEEEEcccccCCccc----ccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHH
Confidence 9999999999999998654311 1111 268999999999878888 99999999888775421
Q ss_pred ------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC---CCeEEEEEccCCC
Q psy13354 254 ------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT---KSHIILVDLRNKK 324 (1342)
Q Consensus 254 ------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~---~~~~v~i~~~~~~ 324 (1342)
.....++++...+.++..++......++++..+++.++++++.+.|.+.|+++..++. ..+++++.++...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 314 (392)
T 2z9v_A 235 ENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGV 314 (392)
T ss_dssp TTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTC
T ss_pred HhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCC
Confidence 1122344445555555555544433237778899999999999999888877643121 3577888886433
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc-ccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA-ITT 368 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~-~~t 368 (1342)
...++...+.+++||.+.++..+. ..+.+|+++.. .++
T Consensus 315 ~~~~l~~~L~~~~gi~v~~g~~~~------~~~~lRi~~~~~~~~ 353 (392)
T 2z9v_A 315 DEKALRQAARARYGVVFSSGRGET------LGKLTRIGHMGPTAQ 353 (392)
T ss_dssp CHHHHHHHHHHHHCEECEECCGGG------TTTEEEEECCGGGCS
T ss_pred CHHHHHHHHHhcCCEEEecCCCCC------CCCeEEEeCcccccC
Confidence 344566666655599998765322 13579999543 443
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-21 Score=231.12 Aligned_cols=343 Identities=10% Similarity=0.056 Sum_probs=229.0
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRL 82 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~l 82 (1342)
+++++.+++..+..+..... ....+.+..+.+. .++.+.+++.+.+.+. . ..|....+..++++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~------~~y~~~~g~~~l~~~la~~~ 75 (411)
T 2o0r_A 4 VSRLRPYATTVFAEMSALAT-RIGAVNLGQGFPDEDGPPKMLQAAQDAIAGG-V------NQYPPGPGSAPLRRAIAAQR 75 (411)
T ss_dssp CGGGGGGSSCHHHHHHHHHH-TTTCEESSCSSCSSCCCHHHHHHHHHHHHTT-C------CSCCCTTCCHHHHHHHHHHH
T ss_pred hhHhHhcCccHHHHHHHHhh-cCCeeeccCcCCCCCCCHHHHHHHHHHHhcC-C------CCCCCCCCCHHHHHHHHHHH
Confidence 34555566555555544332 3356777777644 4466899988887531 1 12333344568889888888
Q ss_pred HHHhCCC---C-ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC---CCCCCH
Q psy13354 83 KKIFNAE---A-ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK---KEKIDY 155 (1342)
Q Consensus 83 a~~~g~~---~-~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~---~~~id~ 155 (1342)
.+.+|.+ + .+++++||++|+..++.+++++||+|++..+.|+++ ...+...|..+ +.++.+. ++.+|+
T Consensus 76 ~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~---~~~~~~~g~~~--~~v~~~~~~~~~~~d~ 150 (411)
T 2o0r_A 76 RRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSY---SPVVAMAGAHR--VTVPLVPDGRGFALDA 150 (411)
T ss_dssp HHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTH---HHHHHHTTCEE--EEEECEEETTEEECCH
T ss_pred HHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhH---HHHHHHcCCEE--EEeeccccccCCCCCH
Confidence 8877743 3 566665889999999999999999999888666554 34455667644 4445443 467899
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C---CCCcEEEe
Q psy13354 156 KKVEYLAKKNKPKLIIAGASAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V---PFADFITS 225 (1342)
Q Consensus 156 e~Le~~i~~~~~~liv~~~s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l---~~~Divv~ 225 (1342)
+++++.+++ ++++++++++++| +. .++++|+++|++||++||+|++|+.+.+.+....+. + ...|++++
T Consensus 151 ~~l~~~l~~-~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 229 (411)
T 2o0r_A 151 DALRRAVTP-RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITIS 229 (411)
T ss_dssp HHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred HHHHHhhcc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEe
Confidence 999998865 4566666665555 22 247999999999999999999998765432222221 1 13589999
Q ss_pred cCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 226 TTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 226 S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
|+||++ |+.| ||+++++++++.+........++ .+.+.+.++..++... .+++++.++++.++++++.+.|.+.
T Consensus 230 s~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 306 (411)
T 2o0r_A 230 SAAKMF-NCTGWKIGWACGPAELIAGVRAAKQYLSYV-GGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEI 306 (411)
T ss_dssp EHHHHT-TCTTTCEEEEECCHHHHHHHHHHHHHHTSC-CCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhc-CCccceEEEEeeCHHHHHHHHHHHhhccCC-CChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999 5555 99999998888776533222222 2234455554444332 4467788899999999999999988
Q ss_pred CcEEeeCCCCCeEEEEEccCC--CCCHHHHHHHHHHCCceeeeccCCCCCC-------Cccccccccccccc
Q psy13354 303 GIRIVSGGTKSHIILVDLRNK--KITGKIAESILESANIICNKNSIPNDPE-------KPYFTSGIRLGSSA 365 (1342)
Q Consensus 303 g~~~~~~~~~~~~v~i~~~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~-------~~~~~~~lRi~~~~ 365 (1342)
|+.+.. +..++++|+.++.. ..+.++...+++++||.+.++..+.... .....+++|++++.
T Consensus 307 g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~ 377 (411)
T 2o0r_A 307 GFAVHD-SYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK 377 (411)
T ss_dssp TCEECC-CCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS
T ss_pred CCEecC-CCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC
Confidence 888754 45567899998752 2345677777766799998865431110 00014679999864
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-21 Score=224.66 Aligned_cols=308 Identities=15% Similarity=0.067 Sum_probs=212.9
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~a 108 (1342)
+.+.+++..+++.+++++.+.+.. . .+ .........+++++++++|.+ +.+++++||++|+..++.+
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~-----~---~~----~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~ 70 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLH-----H---RT----EAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKN 70 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCC-----T---TS----HHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCC-----c---cC----HHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHh
Confidence 456778888899899997765521 0 11 122344555777999999987 4566666999999999999
Q ss_pred ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHH
Q psy13354 109 VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERF 186 (1342)
Q Consensus 109 l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I 186 (1342)
++.|||+|+++...++++. ........|. +++.++.++++.+|++++++ .+++++++++++++ ...++++|
T Consensus 71 ~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~----~~~~~v~~~~~~nptG~~~~l~~i 143 (352)
T 1iug_A 71 LFAPGERVLVPVYGKFSER-FYEIALEAGL--VVERLDYPYGDTPRPEDVAK----EGYAGLLLVHSETSTGALADLPAL 143 (352)
T ss_dssp HCCTTCEEEEEECSHHHHH-HHHHHHHTTC--EEEEEECCTTCCCCTTTSCC----SSCSEEEEESEETTTTEECCHHHH
T ss_pred ccCCCCeEEEEeCCchhHH-HHHHHHHcCC--ceEEEeCCCCCCCCHHHHhc----cCCcEEEEEEecCCcceecCHHHH
Confidence 9999999998886665543 3333455676 44555666667789888876 34566666666555 44589999
Q ss_pred HHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHH---------Hh---
Q psy13354 187 YHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKI---------IN--- 250 (1342)
Q Consensus 187 ~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~---------l~--- 250 (1342)
.++|++| |++||+|++|+.|.... .... .+|++++|+||++.|+.| |++++++++++. +.
T Consensus 144 ~~l~~~~~~~~~li~D~a~~~~~~~~----~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (352)
T 1iug_A 144 ARAFKEKNPEGLVGADMVTSLLVGEV----ALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLAREL 219 (352)
T ss_dssp HHHHHHHCTTCEEEEECTTTBTTBCC----CSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHH
T ss_pred HHHHHhhCCCCEEEEECCccccCcce----eccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHH
Confidence 9999999 99999999998654311 1111 368999999998878888 999999876644 11
Q ss_pred -hccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHH
Q psy13354 251 -SAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKI 329 (1342)
Q Consensus 251 -~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~ 329 (1342)
........++++.+.+.++..++..... ++++..+++.++++++.+.|++.|+++..+....+++|+.++......++
T Consensus 220 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
T 1iug_A 220 KAQKEGESAWTPAINLVLAVAAVLEEVLP-RLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVPYARV 298 (352)
T ss_dssp HHHTTTCCSSCCCHHHHHHHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCCHHHH
T ss_pred hhcccCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCCCHHHH
Confidence 1111223345555556665555555443 47788899999999999999988888754221467888888643334455
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
...+. ++||.+.++..+. ..+++|++++..++
T Consensus 299 ~~~l~-~~gi~v~~~~~~~------~~~~iRi~~~~~~~ 330 (352)
T 1iug_A 299 KEAFA-QRGAVIAGGQGPL------KGKVFRLSLMGAYD 330 (352)
T ss_dssp HHHHH-TTTEECEECCGGG------TTTEEEECCCSSCC
T ss_pred HHHHH-HCCEEEEeCCCcc------CCCEEEEEccccCC
Confidence 55555 5599998765221 23579999987655
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=229.62 Aligned_cols=315 Identities=16% Similarity=0.131 Sum_probs=219.0
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC--ceEecCCHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA--ANVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~--~vi~~~sGs~A~~~a 105 (1342)
..+.+.+++..+++.+.+++.+.+.. . ......+...++++++++++|.+. .+++++||++|+..+
T Consensus 23 ~~~~~~p~p~~~~~~v~~a~~~~~~~-----~-------~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~ 90 (393)
T 3kgw_A 23 TRLLLGPGPSNLAPRVLAAGSLRMIG-----H-------MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETA 90 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHTTCCCCC-----T-------TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHH
T ss_pred cceeccCCCCCCCHHHHHHhcccccC-----c-------ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHH
Confidence 44667778888888888886653211 0 112234566667889999999863 366777999999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
+.+++.+||+|++....+.+. .........|. +++.++.++++.+|++++++.+++.+++++++++++++ ...++
T Consensus 91 ~~~~~~~gd~vl~~~~~~~~~-~~~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 167 (393)
T 3kgw_A 91 LFNLLEPGDSFLTGTNGIWGM-RAAEIADRIGA--RVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPL 167 (393)
T ss_dssp HHHHCCTTCEEEEEESSHHHH-HHHHHHHHTTC--EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred HHhcCCCCCEEEEEeCCchhH-HHHHHHHHcCC--ceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccH
Confidence 999999999999875332111 12344556676 45555666677899999999998756677676666655 44489
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCC-------
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFP------- 255 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~------- 255 (1342)
++|.++|++||++||+|++|+.|...... ....+|++++|+||+++|+.| |++++++++++.+......
T Consensus 168 ~~i~~l~~~~~~~li~De~~~~g~~~~~~---~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (393)
T 3kgw_A 168 DGFGELCHRYQCLLLVDSVASLGGVPIYM---DQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTD 244 (393)
T ss_dssp TTHHHHHHHTTCEEEEECTTTTTTSCCCT---TTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTC
T ss_pred HHHHHHHHHcCCEEEEECCccccCcccch---hhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeec
Confidence 99999999999999999999865431110 011368999999999977887 9999999998888653221
Q ss_pred ---------------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC---CCCeEEE
Q psy13354 256 ---------------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG---TKSHIIL 317 (1342)
Q Consensus 256 ---------------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~---~~~~~v~ 317 (1342)
+..++++....+++..++......+++++.+++.++++++.+.|++.|+++..+. ...++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 324 (393)
T 3kgw_A 245 ITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITT 324 (393)
T ss_dssp HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEE
T ss_pred HHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEE
Confidence 1123444555555555555444445788899999999999999999888765321 1245677
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+.++......++...+++++||.+.++..+. ..+++|+++...
T Consensus 325 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~------~~~~iRi~~~~~ 367 (393)
T 3kgw_A 325 VTVPAGYNWRDIVSYVLDHFSIEISGGLGPT------EERVLRIGLLGY 367 (393)
T ss_dssp EECCTTBCHHHHHHHHHHHHCEECBCCCGGG------TTTEEEEECCGG
T ss_pred EeCCCCCCHHHHHHHHHHhCCEEEeCCcccC------CCCEEEEEeccc
Confidence 8776544455677777776699998754322 245799998443
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=226.15 Aligned_cols=315 Identities=11% Similarity=0.085 Sum_probs=217.3
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
++.+.+..+.+. .++.+.+++.+.+... . ..|+...+..++++++++++.+.+|.+ +.+++++||++|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~------~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a 102 (388)
T 1j32_A 30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQG-K------TRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQS 102 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTT-C------CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHhcC-C------CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHH
Confidence 456888777654 3566888888777431 1 123334455688998888888877752 456666588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--KEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++.+||+|++....|++ ....+...|.. ++.++.+. ++.+|++++++.+++ ++++++++++++|
T Consensus 103 ~~~~~~~~~~~gd~vl~~~~~~~~---~~~~~~~~g~~--~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~npt 176 (388)
T 1j32_A 103 IFNLMLAMIEPGDEVIIPAPFWVS---YPEMVKLAEGT--PVILPTTVETQFKVSPEQIRQAITP-KTKLLVFNTPSNPT 176 (388)
T ss_dssp HHHHHHHHCCTTCEEEEESSCCTH---HHHHHHHTTCE--EEEECCCGGGTTCCCHHHHHHHCCT-TEEEEEEESSCTTT
T ss_pred HHHHHHHhcCCCCEEEEcCCCChh---HHHHHHHcCCE--EEEecCCcccCCCCCHHHHHHhcCc-CceEEEEeCCCCCC
Confidence 999999999999999987765544 34445666764 45555553 577899999998875 4566665555555
Q ss_pred cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC------CCcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP------FADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 ~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~------~~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
+. .++++|+++|++||++||+|++|+.+.+.+..+.+... ..+++++|+||++ |+.| ||+++++++
T Consensus 177 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~~~~ 255 (388)
T 1j32_A 177 GMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGPVPL 255 (388)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECCHHH
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhcc-CCcccceEEEEeCHHH
Confidence 22 35999999999999999999999875543322222111 2579999999999 6555 999999988
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccC-C
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRN-K 323 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~-~ 323 (1342)
++.+......+.++. +...+.++..++ +...+++++.++++.++++++.+.|.+. |+++.. +.+++++|+.++. .
T Consensus 256 ~~~l~~~~~~~~~~~-~~~~~~a~~~~l-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~~~~ 332 (388)
T 1j32_A 256 VKAATKIQGHSTSNV-CTFAQYGAIAAY-ENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPK-PDGAFYMFPSIAKTG 332 (388)
T ss_dssp HHHHHHHHHTTTCSC-CHHHHHHHHHHH-HSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCC-CCBTTEECCBCGGGT
T ss_pred HHHHHHHHhhcccCC-CHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccC-CCeeEEEEEecCCCC
Confidence 888766433333333 233444433333 3334467788899999999999999986 777643 4556778887764 2
Q ss_pred CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 324 KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
....++...+++++||.+.++..++. .+++|++++
T Consensus 333 ~~~~~~~~~l~~~~gi~v~~g~~~~~------~~~iRis~~ 367 (388)
T 1j32_A 333 RSSLDFCSELLDQHQVATVPGAAFGA------DDCIRLSYA 367 (388)
T ss_dssp CCHHHHHHHHHHHHCEECEEGGGGTC------TTBEEEECC
T ss_pred CCHHHHHHHHHHhCCEEEeChhhhCC------CCcEEEEec
Confidence 23456677777657999998754432 246999986
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-21 Score=230.09 Aligned_cols=348 Identities=13% Similarity=0.105 Sum_probs=235.2
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRL 82 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~l 82 (1342)
+++++..++..+..+.... ...+.|.+..+.+. .++.+.+++.+.+.... ....|+...+..++++++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-----~~~~y~~~~g~~~lr~~la~~~ 80 (422)
T 3fvs_A 7 ARRLDGIDYNPWVEFVKLA-SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDF-----MLNQYTKTFGYPPLTKILASFF 80 (422)
T ss_dssp CGGGTTCCCCHHHHHHHHH-HTSCCEECCCSSCSSCCCHHHHHHHHHHHHSCG-----GGGSCCCTTCCHHHHHHHHHHH
T ss_pred HHHhhccCccHHHHHHHHh-hcCCceEeCCCCCCCCCCHHHHHHHHHHHhCCC-----ccCCCCCCCCCHHHHHHHHHHH
Confidence 3455555554444444332 23466888877754 45569999888875321 0012333334568888888888
Q ss_pred HHHhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC----------C
Q psy13354 83 KKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL----------N 148 (1342)
Q Consensus 83 a~~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~----------~ 148 (1342)
.+.+|.+ +.+++++||++|+..++.+++.+||+|++..+.|++ ....+...|..+..+++.. +
T Consensus 81 ~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~---~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~ 157 (422)
T 3fvs_A 81 GELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDC---YEPMTMMAGGRPVFVSLKPGPIQNGELGSS 157 (422)
T ss_dssp HHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTT---HHHHHHHTTCEEEEEECBCCCCCSSSCCBG
T ss_pred HHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchh---hHHHHHHcCCEEEEEecccccccccccccc
Confidence 8888764 356667688999999999999999999987766554 3445566677555554432 1
Q ss_pred CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cc-c---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----
Q psy13354 149 KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QY-I---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----- 218 (1342)
Q Consensus 149 ~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~-~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----- 218 (1342)
.++.+|++++++.+++ ++++++++++++| +. . ++++|+++|++||++||+||+|+.+.+.+..+.+...
T Consensus 158 ~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 236 (422)
T 3fvs_A 158 SNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMW 236 (422)
T ss_dssp GGSBCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTG
T ss_pred cCCCCCHHHHHhhcCC-CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhccccc
Confidence 2567899999998875 4566666666665 22 2 5999999999999999999999865543322222111
Q ss_pred CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHH------hccchHHHHHHHHH
Q psy13354 219 FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE------VLKPDFKIYQKQVV 289 (1342)
Q Consensus 219 ~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~------~l~~~~~~~~~~l~ 289 (1342)
..+++++|+||++ |+.| ||+++++++++.+........++ ++.+.+.++..++.. ....+++..++++.
T Consensus 237 ~~~i~~~S~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (422)
T 3fvs_A 237 ERTLTIGSAGKTF-SATGWKVGWVLGPDHIMKHLRTVHQNSVFH-CPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQ 314 (422)
T ss_dssp GGEEEEEEHHHHH-TCGGGCCEEEECCHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHH
T ss_pred CcEEEEecchhcc-CCccceEEEEEeCHHHHHHHHHHHhhccCC-CCcHHHHHHHHHHhhccccccchHHHHHHHHHHHH
Confidence 1348899999999 6566 99999999888876543333333 345556665555543 13457888899999
Q ss_pred HHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC---C----------CHHHHHHHHHHCCceeeeccCCCCCC-Cccc
Q psy13354 290 KNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK---I----------TGKIAESILESANIICNKNSIPNDPE-KPYF 355 (1342)
Q Consensus 290 ~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~---~----------~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~~ 355 (1342)
++++++.+.|.+.|+.+.. +..++++|++++... . +.+++..+++++||.+.++..+..+. .+..
T Consensus 315 ~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~ 393 (422)
T 3fvs_A 315 RCRDHMIRSLQSVGLKPII-PQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHF 393 (422)
T ss_dssp HHHHHHHHHHHTTTCEEEB-CSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTS
T ss_pred HHHHHHHHHHHHcCCeecC-CCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCC
Confidence 9999999999999988654 567889999875411 0 34778888888899999865443210 0112
Q ss_pred cccccccccc
Q psy13354 356 TSGIRLGSSA 365 (1342)
Q Consensus 356 ~~~lRi~~~~ 365 (1342)
.+++|++++.
T Consensus 394 ~~~iRis~~~ 403 (422)
T 3fvs_A 394 DHYIRFCFVK 403 (422)
T ss_dssp CSEEEEECCC
T ss_pred CCeEEEEecC
Confidence 4679999776
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=234.55 Aligned_cols=325 Identities=14% Similarity=0.115 Sum_probs=221.9
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.|++..+.+. .++.+.+++.+++..... ..|+...+..++++++.+++.+.+|.+ +.+++++||++|
T Consensus 57 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~------~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~a 130 (447)
T 3b46_A 57 RELINLGQGFFSYSPPQFAIKEAQKALDIPMV------NQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEG 130 (447)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTTSGGG------GSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhCcCC------CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHH
Confidence 456788777533 345588888877742111 123333445688887777877777753 356666588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC----------CCCCCHHHHHHHHHhcCCeEEE
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK----------KEKIDYKKVEYLAKKNKPKLII 171 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~----------~~~id~e~Le~~i~~~~~~liv 171 (1342)
+..++.+++.|||+|++..+.|+++ ...+...|..+..+++..+. ++.+|++++++.+++ ++++++
T Consensus 131 l~~~~~~l~~~gd~Vlv~~p~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~ 206 (447)
T 3b46_A 131 ILSCLMGLLNAGDEVIVFEPFFDQY---IPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS-KTKAVI 206 (447)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTTH---HHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT-TEEEEE
T ss_pred HHHHHHHHcCCCCEEEEeCCCchhH---HHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc-CCeEEE
Confidence 9999999999999999888666543 44456677755555443222 467899999998864 456666
Q ss_pred EcCCCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C----CCCcEEEecCCccCCCCCe---e
Q psy13354 172 AGASAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V----PFADFITSTTHKSLRGPRG---G 237 (1342)
Q Consensus 172 ~~~s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l----~~~Divv~S~sK~l~gp~G---G 237 (1342)
++++++| +. .++++|+++|++||++||+||+|+.+.+.+ .+.+. + ...+++++|+||++ |+.| |
T Consensus 207 l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~riG 284 (447)
T 3b46_A 207 INTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLTVGSAGKSF-AATGWRIG 284 (447)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEEEEEHHHHT-TCTTSCCE
T ss_pred EeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEEEecCchhc-CCcchhhE
Confidence 6666665 22 369999999999999999999998654432 22221 1 12589999999999 6556 9
Q ss_pred EEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeE
Q psy13354 238 FILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHI 315 (1342)
Q Consensus 238 ~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~ 315 (1342)
|+++ ++++++.+........+ +++.+.+.++..++.... ..++++.++++.++++++.+.|.+.|+++.. +.++++
T Consensus 285 ~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~ 362 (447)
T 3b46_A 285 WVLSLNAELLSYAAKAHTRICF-ASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTA-PEGTYF 362 (447)
T ss_dssp EEECSCHHHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEEC-CSBSSE
T ss_pred EEEeCCHHHHHHHHHHHhhccC-CCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecC-CCeeEE
Confidence 9999 88888887653222222 334556666555554431 3467788899999999999999998887653 566889
Q ss_pred EEEEccCC---------------CCCHHHHHHHHHHCCceeeeccCCCCCCC-ccccccccccccc
Q psy13354 316 ILVDLRNK---------------KITGKIAESILESANIICNKNSIPNDPEK-PYFTSGIRLGSSA 365 (1342)
Q Consensus 316 v~i~~~~~---------------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~-~~~~~~lRi~~~~ 365 (1342)
+|++++.. ..+.+++..+++++||.+.++..+..... ....+++|++++.
T Consensus 363 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~ 428 (447)
T 3b46_A 363 VLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK 428 (447)
T ss_dssp EEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS
T ss_pred EEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC
Confidence 99998752 12346777777778999988654432110 0114579999874
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-20 Score=226.54 Aligned_cols=321 Identities=14% Similarity=0.108 Sum_probs=218.2
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.|.+..+.+.+ ++.+++++.+.+......+|+ ...+..++++++++++...+|.+ +.+++++||++|
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~a 117 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYP------NLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQG 117 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCC------CTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCC------CCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHH
Confidence 4668888877654 455999988887532212232 22334578887777777766643 456666688999
Q ss_pred HHHHHHHcc--CCCC--EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 102 NQAVFFSVL--NPGD--TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 102 ~~~al~al~--~pGD--~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
+..++.+++ ++|| +|++....+ ......+...|..+..+++. ++++.+|++++++++...++++++++.+++
T Consensus 118 l~~~~~~l~~~~~gd~~~Vl~~~p~~---~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~~~~~~v~l~~p~n 193 (437)
T 3g0t_A 118 CFVSFLVANRTHKNREYGTLFIDPGF---NLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQTGQFCSIIYSNPNN 193 (437)
T ss_dssp HHHHHHHHTTSCTTCSCCEEEEESCC---HHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTTTCCCEEEEESSCT
T ss_pred HHHHHHHHhcCCCCCccEEEEeCCCc---HhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhcCCceEEEEeCCCC
Confidence 999999998 9999 999876544 44445556667755555443 345678999999999444566665555555
Q ss_pred C-c-cc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC-------CCC---CCCcEEEecCCccCCCCCe---eEE
Q psy13354 178 S-Q-YI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP-------NPV---PFADFITSTTHKSLRGPRG---GFI 239 (1342)
Q Consensus 178 ~-~-~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~-------~~l---~~~Divv~S~sK~l~gp~G---G~i 239 (1342)
| + .. ++++|+++|++||++||+|++|+.+.+...... ..+ ...+++++|+||++ |+.| ||+
T Consensus 194 ptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~ 272 (437)
T 3g0t_A 194 PTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF-SYAGQRIGVL 272 (437)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT-SCGGGCCEEE
T ss_pred CCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCC-CCccceeEEE
Confidence 5 2 22 488899999999999999999986555422111 111 12458899999999 6555 999
Q ss_pred EEechhHH-H-----------------HhhccCCccccCCcHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHH
Q psy13354 240 LMKKKYKK-I-----------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPD---FKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 240 v~~~~l~~-~-----------------l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~---~~~~~~~l~~~a~~l~~~ 298 (1342)
++++++++ . +...... ...+++...+.++..++... ..+ +++.++++.++++++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 350 (437)
T 3g0t_A 273 MISGKLYEREYPDLEESFGRLRFGEALSSSALYA-LSSGATHSAQWGMAAMLKAC-NDGEYNFRDSVIEYGRKARIMKKM 350 (437)
T ss_dssp EECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHH-HHSSSCHHHHHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHhhhhhhcccccccccchhHHHHHHHHhh-hcCCCCHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877 5 5432221 12334455555555554443 223 788899999999999999
Q ss_pred HHhCCcEEe------eCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 299 LDQRGIRIV------SGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 299 L~~~g~~~~------~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
|.+.|+++. .++..++++|+.++ .....++...+++ +||.+.++..++... .+.+|++++..
T Consensus 351 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~-~gi~v~~~~~~~~~~----~~~iRis~~~~ 418 (437)
T 3g0t_A 351 FLDNGFNIVYDKDGNEPLADGFYFTVGYK-GMDSSKLIEKFVR-YGMCAITLKTTGSKR----NEAMRICTSLL 418 (437)
T ss_dssp HHTTTEEESSCEETTEECCSSSEEEEEET-TCCHHHHHHHHHH-TTEECEESTTTTCCC----TTCEEEECSSS
T ss_pred HHHcCCEEeccccCCCCCceeEEEEEecC-CCCHHHHHHHHHH-cCeEEeeccccCCCC----CCEEEEEEecC
Confidence 999998876 23357789999987 2334455666555 599999876655432 25699998854
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-21 Score=229.00 Aligned_cols=319 Identities=15% Similarity=0.101 Sum_probs=213.3
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C--CceEecCCHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E--AANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~--~~vi~~~sGs~ 100 (1342)
++.+.+..+.+. .++.+.+++.+.+.... ...|+...+..++++.+++++.+.+|. + +.+++++||++
T Consensus 37 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~------~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 37 EDIIDLSMGNPDGPTPPHIVEKLCTVAQRED------THGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHTC---------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred CCEEecCCCCCCCCCCHHHHHHHHHHHhCCC------CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 456888777654 34568888777664211 112333344568888777777776685 2 35666669999
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--CCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--KEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
|+..++.+++++||+|++..+.|++ ....+...|.. ++.++.++ ++.+|++++++.+++ ++++++++.+++|
T Consensus 111 a~~~~~~~~~~~gd~Vl~~~p~~~~---~~~~~~~~g~~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~l~~p~np 184 (412)
T 2x5d_A 111 GLAHLMLATLDHGDTILVPNPSYPI---HIYGAVIAGAQ--VRSVPLVPGIDFFNELERAIRESIP-KPRMMILGFPSNP 184 (412)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCHH---HHHHHHHHTCE--EEEEECSTTSCHHHHHHHHHHTEES-CCSEEEEESSCTT
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchh---HHHHHHHcCCE--EEEeecCCccCCCCCHHHHHHhccc-CceEEEECCCCCC
Confidence 9999999999999999988755544 34444556664 44445553 345788999988764 4566666555665
Q ss_pred -cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C---CCCcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 -QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V---PFADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 -~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l---~~~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
+. .++++|+++|++||++||+|++|+.+.+.+....+. + ...+++++|+||++ |+.| ||+++++++
T Consensus 185 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~ 263 (412)
T 2x5d_A 185 TAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSY-NMAGWRIGFMVGNPEL 263 (412)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CC-SCTTSCCEEEEECHHH
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCcccc-CCcccceEEEEcCHHH
Confidence 22 257999999999999999999998765432222211 1 12578999999999 5455 999999998
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC-
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK- 324 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~- 324 (1342)
++.+........ .+++.+.+.++..+ .+...++++..++++.++++++.+.|.+.|+.+.. +.+++++|+.++...
T Consensus 264 ~~~l~~~~~~~~-~~~~~~~~~a~~~~-l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~ 340 (412)
T 2x5d_A 264 VSALARIKSYHD-YGTFTPLQVAAIAA-LEGDQQCVRDIARQYQQRRDVLVKGLREAGWMVEN-PKASMYVWAKIPEPYA 340 (412)
T ss_dssp HHHHHHHHHHHC-CCCCHHHHHHHHHH-HHSCSHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC-CSBSSEEEEECCTTTG
T ss_pred HHHHHHHHhhhc-cCCCHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEecC-CCeeeEEEEEcCCccC
Confidence 888765332222 23345555554444 34334467888899999999999999988877643 445678999886432
Q ss_pred --CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 325 --ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 325 --~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
...++...+++++||.+.++..+... ..+++|++++.
T Consensus 341 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~----~~~~iRis~~~ 379 (412)
T 2x5d_A 341 HLGSLEFAKKLLQDAKVSVSPGIGFGDY----GDDHVRFALIE 379 (412)
T ss_dssp GGCHHHHHHHHHHHHCEECEEGGGGCGG----GTTEEEEECCS
T ss_pred CCCHHHHHHHHHHHCCEEEeCchhhCCC----CCCeEEEEecC
Confidence 34567777777679999987554321 14579999886
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.6e-21 Score=226.43 Aligned_cols=316 Identities=12% Similarity=0.029 Sum_probs=217.4
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---C-ceEecCCHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---A-ANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~-~vi~~~sGs~ 100 (1342)
++.+.+..+++.+ +|.+.+++.+.+.... ...|+...+..++++++++++.+.+|.+ + .+++++||++
T Consensus 25 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (376)
T 2dou_A 25 VGLIDLSIGSTDLPPPEAPLKALAEALNDPT------TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98 (376)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHTTCGG------GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred CCEEeccCCCCCCCCCHHHHHHHHHHHhCCC------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 4568888777553 4668888887764211 1123334467788887777777777875 3 6677769999
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
|+..++.+++++||+|++..+.++ .....+...|.. ++.++.++++.+|++++++.+++ ++++++++++++| +
T Consensus 99 a~~~~~~~l~~~gd~vl~~~p~y~---~~~~~~~~~g~~--~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG 172 (376)
T 2dou_A 99 GLAHLLLALTEPEDLLLLPEVAYP---SYFGAARVASLR--TFLIPLREDGLADLKAVPEGVWR-EAKVLLLNYPNNPTG 172 (376)
T ss_dssp HHHHHHHHHCCTTCEEEEESSCCH---HHHHHHHHTTCE--EEEECBCTTSSBCGGGSCHHHHH-HEEEEEECSSCTTTC
T ss_pred HHHHHHHHhcCCCCEEEECCCCcH---hHHHHHHHcCCE--EEEeeCCCCCCCCHHHHHHhhcc-CceEEEECCCCCCcC
Confidence 999999999999999997765444 344445566764 44445555567899999988864 4567777666665 2
Q ss_pred c-c---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechhHH
Q psy13354 180 Y-I---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKYKK 247 (1342)
Q Consensus 180 ~-~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l~~ 247 (1342)
. . ++++|+++|++||++||+||+|+.+.+.+ ...+.+. ..+++++|+||++ |+.| ||+++++++++
T Consensus 173 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~ 250 (376)
T 2dou_A 173 AVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLSKSY-NLAGFRLGFALGSEEALA 250 (376)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHHHHH-TCGGGCCEEEEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecchhhc-CChhheeEEEecCHHHHH
Confidence 2 2 48899999999999999999998765432 2222221 2468899999999 5455 99999999988
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCH
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
.+......+.++ ++.+.+.++..++. ....+++..++++.++++++.+.|.+. +.+.. +..++++|+.++......
T Consensus 251 ~l~~~~~~~~~~-~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 326 (376)
T 2dou_A 251 RLERVKGVIDFN-QYAGVLRMGVEALK-TPKEVVRGYARVYRERALGMAEALKGV-LSLLP-PRATMYLWGRLPEGVDDL 326 (376)
T ss_dssp HHHHHHHHHCCC-SCHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHTTT-SEECC-CCBSSEEEEECCTTCCHH
T ss_pred HHHHHHHhcccC-CCHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHh-cCccC-CCeeEEEEEECCCCCCHH
Confidence 887643333333 33455555444443 323467778889999999999999887 76643 445778999987543345
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++...++++ ||.+.++..++.. ..+++|++++.
T Consensus 327 ~~~~~l~~~-gi~v~~g~~f~~~----~~~~~Ris~~~ 359 (376)
T 2dou_A 327 EFGLRLVER-GVALAPGRGFGPG----GKGFVRIALVR 359 (376)
T ss_dssp HHHHHHHHT-TEECEEGGGGCGG----GTTEEEEECCS
T ss_pred HHHHHHHHC-CEEEcCchhhCCC----CCCeEEEEecC
Confidence 667777666 9999987544321 14579999875
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=227.71 Aligned_cols=326 Identities=13% Similarity=0.052 Sum_probs=223.8
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~ 100 (1342)
.+.|.|..+.+. .++.+.+++.+.+......+ |+...+..++++++++++.+.+|.+ +.+++++||++
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~------y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~ 96 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQ------YTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYG 96 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGS------CCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCccccC------CCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHH
Confidence 456888777654 45669999888875322212 2223344688887888888776643 45666658889
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC---------CCCCCCCHHHHHHHHHhcCCeEEE
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL---------NKKEKIDYKKVEYLAKKNKPKLII 171 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~---------~~~~~id~e~Le~~i~~~~~~liv 171 (1342)
|+..++.+++.+||+|++....|++ ....+...|..+..+++.. +.++.+|++++++.+++ ++++++
T Consensus 97 a~~~~~~~~~~~gd~vl~~~p~~~~---~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~-~~~~v~ 172 (410)
T 3e2y_A 97 SLFNSIQGLVDPGDEVIIMVPFYDC---YEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-KTKAII 172 (410)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCTT---HHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT-TEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEeCCCchh---hHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCC-CceEEE
Confidence 9999999999999999987755543 3445566677555554431 14567899999998865 456666
Q ss_pred EcCCCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eE
Q psy13354 172 AGASAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GF 238 (1342)
Q Consensus 172 ~~~s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~ 238 (1342)
++++++| +. .++++|+++|++||++||+|++|+.+.+.+..+.+... ..+++++|+||++ |+.| ||
T Consensus 173 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~ 251 (410)
T 3e2y_A 173 LNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTF-SVTGWKLGW 251 (410)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHS-SCGGGCCEE
T ss_pred EeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhc-CCCCceEEE
Confidence 6666665 22 37999999999999999999999865543322222111 1248899999999 6556 99
Q ss_pred EEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHH------hccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC
Q psy13354 239 ILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE------VLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK 312 (1342)
Q Consensus 239 iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~------~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~ 312 (1342)
+++++++++.+........++ ++.+.+.++..++.. ....++++..+++.++++++.+.|.+.|+.+.. +..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~ 329 (410)
T 3e2y_A 252 SIGPAHLIKHLQTVQQNSFYT-CATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIV-PDG 329 (410)
T ss_dssp EECCHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEB-CSB
T ss_pred EEECHHHHHHHHHHHHhhccC-CChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecC-CCc
Confidence 999999888877643333333 345556655555543 124478888899999999999999999988654 567
Q ss_pred CeEEEEEccCCCC-----------CHHHHHHHHHHCCceeeeccCCCCCC-Cccccccccccccc
Q psy13354 313 SHIILVDLRNKKI-----------TGKIAESILESANIICNKNSIPNDPE-KPYFTSGIRLGSSA 365 (1342)
Q Consensus 313 ~~~v~i~~~~~~~-----------~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~~~~~lRi~~~~ 365 (1342)
++++|+++..... +.+++..+++++||.+.++..+.... .+...+++|++++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~ 394 (410)
T 3e2y_A 330 GYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK 394 (410)
T ss_dssp SSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC
T ss_pred cEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC
Confidence 8899998865221 13777778888899999875443321 01124679999765
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=225.58 Aligned_cols=317 Identities=13% Similarity=0.070 Sum_probs=219.1
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~A 101 (1342)
+.|.+..+.+.+ ++.+.+++.+.+......+| +...+..++++++++++.+.+|.+ +.+++++||++|
T Consensus 48 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y------~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~a 121 (404)
T 2o1b_A 48 PLINMAVGIPDGPTPQGIIDHFQKALTIPENQKY------GAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNG 121 (404)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSC------CCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHH
T ss_pred CEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCC------CCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHH
Confidence 457887777553 45688888777632111122 222345688887777777777864 466777699999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
+..++.+++++||+|++..+.++++ ...+...|.. ++.++.++ ++.+|++++++.+++ ++++++++++++| +
T Consensus 122 l~~~~~~l~~~gd~Vl~~~p~y~~~---~~~~~~~g~~--~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG 195 (404)
T 2o1b_A 122 LVAVPTCVINPGDYVLLPDPGYTDY---LAGVLLADGK--PVPLNLEPPHYLPDWSKVDSQIID-KTKLIYLTYPNNPTG 195 (404)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCSSH---HHHHHHTTCE--EEEEECCTTTCCCCGGGSCHHHHH-HEEEEEECSSCTTTC
T ss_pred HHHHHHHhcCCCCEEEEcCCCchhH---HHHHHHCCCE--EEEeccCcccCcCCHHHHHHhhcc-CceEEEEcCCCCCCC
Confidence 9999999999999999887665544 3444566764 44445543 456899999998864 4567776666665 2
Q ss_pred c-c---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechhHH
Q psy13354 180 Y-I---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKYKK 247 (1342)
Q Consensus 180 ~-~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l~~ 247 (1342)
. . ++++|+++|++||++||+||+|+.+.+.+ ...+... ..+++++|+||++ |+.| ||+++++++++
T Consensus 196 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~ 273 (404)
T 2o1b_A 196 STATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGY-NMSGFRVGFAVGNKDMIQ 273 (404)
T ss_dssp CCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTT-TCGGGCCEEEEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhc-cCchhheEeEecCHHHHH
Confidence 2 2 58899999999999999999998754422 2222222 1368899999999 5455 99999999888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCH
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
.+......+.+ +++.+.+.++..++... ..++++.++++.++++++.+.|.+.|+.+.. +..++++|+.++....+.
T Consensus 274 ~l~~~~~~~~~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~~ 350 (404)
T 2o1b_A 274 ALKKYQTHTNA-GMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKADLPFVH-AKGGIYVWLETPPGYDSE 350 (404)
T ss_dssp HHHHHHHHHCC-CCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEC-CCBSSEEEEECCTTCCHH
T ss_pred HHHHHHhhccC-CCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCeecC-CCcceEEEEeCCCCCCHH
Confidence 87654332222 34455555555554432 3467788889999999999999988887644 445678999987543345
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++...+++++||.+.++..++.. ..+++|++++.
T Consensus 351 ~l~~~l~~~~gi~v~~g~~f~~~----~~~~iRis~~~ 384 (404)
T 2o1b_A 351 QFEQFLVQEKSILVAPGKPFGEN----GNRYVRISLAL 384 (404)
T ss_dssp HHHHHHHHHHCEECEESGGGCGG----GTTEEEEECCS
T ss_pred HHHHHHHHHCCEEEeCchhhCcC----CCCeEEEEEcC
Confidence 67777776679999986544321 14579999986
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-20 Score=223.16 Aligned_cols=311 Identities=14% Similarity=0.084 Sum_probs=213.6
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC--ceEecCCHHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA--ANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~--~vi~~~sGs~A~~~al~ 107 (1342)
+.+.++...+++.+.+++.+.+.. . + ..........+++.+++++|.+. .+++++||++|+..++.
T Consensus 20 ~~~~~~p~~~~~~v~~a~~~~~~~---------~-~--~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~ 87 (396)
T 2ch1_A 20 IMMGPGPSNCSKRVLTAMTNTVLS---------N-F--HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLS 87 (396)
T ss_dssp BCCSSSSCCCCHHHHHHTTSCCCC---------T-T--CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHH
T ss_pred eeecCCCCCCCHHHHHHhcccccc---------C-C--ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHH
Confidence 445555666777788886554311 1 1 12223445567779999999874 46677799999999999
Q ss_pred HccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHH
Q psy13354 108 SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 108 al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~ 185 (1342)
+++.+||+|+++...++++. ........|.. ++.++.++++.+|++++++.+++.++++|++++++++ ...++++
T Consensus 88 ~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~--~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 164 (396)
T 2ch1_A 88 NLLEEGDRVLIAVNGIWAER-AVEMSERYGAD--VRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEG 164 (396)
T ss_dssp HHCCTTCEEEEEESSHHHHH-HHHHHHHTTCE--EEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred HhcCCCCeEEEEcCCcccHH-HHHHHHHcCCc--eEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHH
Confidence 99999999998886665431 12345666774 4555666678899999999998734566666665555 4448999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc----------
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV---------- 253 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~---------- 253 (1342)
|.++|++||++||+|++|+.|... ..... .+|++++|+||+++++.| |++++++++++.+....
T Consensus 165 i~~l~~~~~~~li~Dea~~~g~~~----~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (396)
T 2ch1_A 165 VGQICHQHDCLLIVDAVASLCGVP----FYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDL 240 (396)
T ss_dssp HHHHHHHTTCEEEEECTTTBTTBC----CCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCH
T ss_pred HHHHHHHcCCEEEEEccccccCCc----cchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEech
Confidence 999999999999999999865331 11111 258999999999977878 99999998887765321
Q ss_pred ------------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC---CCeEEEE
Q psy13354 254 ------------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT---KSHIILV 318 (1342)
Q Consensus 254 ------------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~---~~~~v~i 318 (1342)
..+..++++.+.+.++..++......++++..+++.++++++.+.|.+.|+++..+.. ...++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 320 (396)
T 2ch1_A 241 LLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGI 320 (396)
T ss_dssp HHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEE
T ss_pred HHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEE
Confidence 0122344556666666666655444467888999999999999999988887654221 1237888
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.++......++...+++++||.+.++..+. ..+++|++++.
T Consensus 321 ~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~------~~~~iRi~~~~ 361 (396)
T 2ch1_A 321 MIPKGVDWWKVSQYAMNNFSLEVQGGLGPT------FGKAWRVGIMG 361 (396)
T ss_dssp ECCTTCCHHHHHHHHHHHHCBCCBCCCGGG------TTTEEEEECCG
T ss_pred EcCCCCCHHHHHHHHHHhCCEEEecCcccc------CCCEEEEECCC
Confidence 876433345667777766699998653221 24579999854
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=224.21 Aligned_cols=330 Identities=14% Similarity=0.101 Sum_probs=221.7
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLK 83 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la 83 (1342)
++++...+.....+..... ....+.+..+.+.+ ++.+.+++.+.+.. ... |+...+..++++ .++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~------y~~~~~~~~l~~----~la 71 (381)
T 1v2d_A 5 PRTEAAKESIFPRMSGLAQ-RLGAVNLGQGFPSNPPPPFLLEAVRRALGR--QDQ------YAPPAGLPALRE----ALA 71 (381)
T ss_dssp GGGGGC---CHHHHHHHHH-HHTCEECCCCSCSSCCCHHHHHHHHHHTTT--SCS------CCCTTCCHHHHH----HHH
T ss_pred hhhhhcCccHHHHHHHHHh-cCCeEEecCCCCCCCCCHHHHHHHHHHHHH--hcC------CCCCCCCHHHHH----HHH
Confidence 4455555444444443332 24568887776543 45688888877642 111 222233445555 777
Q ss_pred HHhCCC-CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC---CCCCCCHHHHH
Q psy13354 84 KIFNAE-AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN---KKEKIDYKKVE 159 (1342)
Q Consensus 84 ~~~g~~-~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~---~~~~id~e~Le 159 (1342)
++++.+ +.+++++||++|+..++.+++.+||+|++....|+++ ...+...|..+. .++.+ +++.+|+++++
T Consensus 72 ~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~---~~~~~~~g~~~~--~v~~~~~~~~~~~d~~~l~ 146 (381)
T 1v2d_A 72 EEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVY---LPDAFLAGAKAR--LVRLDLTPEGFRLDLSALE 146 (381)
T ss_dssp HHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTH---HHHHHHTTCEEE--EEECEEETTEEECCHHHHH
T ss_pred HhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhH---HHHHHHcCCEEE--EEeCCCCCccCCcCHHHHH
Confidence 888876 4566666999999999999999999999888666554 344566677444 44544 45778999999
Q ss_pred HHHHhcCCeEEEEcCCCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---CCCcEEEecCCccC
Q psy13354 160 YLAKKNKPKLIIAGASAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---PFADFITSTTHKSL 231 (1342)
Q Consensus 160 ~~i~~~~~~liv~~~s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---~~~Divv~S~sK~l 231 (1342)
+.+++ ++++++++++++| +. .++++|+++|++||++||+|++|+.+.+ +....+.. ...|++++|+||++
T Consensus 147 ~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~ 224 (381)
T 1v2d_A 147 KALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRL 224 (381)
T ss_dssp TTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHT
T ss_pred HhcCc-CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhc
Confidence 88864 4566666666555 22 2489999999999999999999986544 21111111 23689999999999
Q ss_pred CCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 232 RGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-KPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 232 ~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
|+.| ||+++++++++.+........ .+++.+.+.++..++.... .+++++.++++.++++++.+.|.+.|+++.
T Consensus 225 -~~~G~r~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 302 (381)
T 1v2d_A 225 -EATGYRVGWIVGPKEFMPRLAGMRQWTS-FSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVY 302 (381)
T ss_dssp -TCGGGCCEEEECCTTTHHHHHHHHHHHT-SSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred -CCcccceEEEEeCHHHHHHHHHHHhhcc-cCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEec
Confidence 5555 999999988888765322112 2334555555555554331 447888899999999999999999888875
Q ss_pred eCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
. +..++++|+.++.. + +..+++++||.+.++..+.... ...+++|++++.
T Consensus 303 ~-~~~~~~~~~~~~~~--~---~~~~l~~~gi~v~~g~~~~~~~--~~~~~iRi~~~~ 352 (381)
T 1v2d_A 303 V-PEGTYFLMAELPGW--D---AFRLVEEARVALIPASAFYLED--PPKDLFRFAFCK 352 (381)
T ss_dssp C-CSBSSEEEEECTTC--C---HHHHHHHTCEECEEGGGGCSSS--CCTTEEEEECCS
T ss_pred C-CCcceEEEEecChH--h---HHHHHHhCCEEEecchHhCCCC--CCCCEEEEEeCC
Confidence 4 44567889988754 2 6667777899999875544311 114579999876
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=223.57 Aligned_cols=315 Identities=14% Similarity=0.108 Sum_probs=217.4
Q ss_pred ccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHH
Q psy13354 26 QNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQ 100 (1342)
Q Consensus 26 ~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~ 100 (1342)
.++.|.+..+++. .+|.+.+++.+.+... ..+|+ . .+ .++++++++++.+.+|.+ +.+++++||++
T Consensus 22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~------~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~ 92 (377)
T 3fdb_A 22 GQGVLPLWVAESDFSTCPAVLQAITDAVQRE-AFGYQ------P-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVR 92 (377)
T ss_dssp CTTSEECCSSCCCSCCCHHHHHHHHHHHHTT-CCSSC------C-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred CCCeeeecccCCCCCCCHHHHHHHHHHHHcC-CCCCC------C-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHH
Confidence 3567888888764 3556999988887531 11222 2 22 467787777777776633 45666669999
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
|+..++.+++++||+|++..+.+++ ....+...|.. ++.++.+++ +|++++++.+++++. +++++++++| +
T Consensus 93 a~~~~~~~~~~~gd~vl~~~~~~~~---~~~~~~~~g~~--~~~~~~~~~--~d~~~l~~~l~~~~~-~v~i~~p~nptG 164 (377)
T 3fdb_A 93 GLYIAIDHFTPAQSKVIVPTPAYPP---FFHLLSATQRE--GIFIDATGG--INLHDVEKGFQAGAR-SILLCNPYNPLG 164 (377)
T ss_dssp HHHHHHHHHSCTTCCEEEEESCCTH---HHHHHHHHTCC--EEEEECTTS--CCHHHHHHHHHTTCC-EEEEESSBTTTT
T ss_pred HHHHHHHHhcCCCCEEEEcCCCcHh---HHHHHHHcCCE--EEEccCCCC--CCHHHHHHHhccCCC-EEEEeCCCCCCC
Confidence 9999999999999999987755544 44445566764 444555544 899999999987644 4444454555 2
Q ss_pred c----cCHHHHHHHHHHcCCEEEEEcccchhhhhc-CCCCCCCC----CCcEEEecCCccCCCCCe---eEEEE-echhH
Q psy13354 180 Y----IDFERFYHIAKNINSYFMVDMAHYAGLIAA-GEYPNPVP----FADFITSTTHKSLRGPRG---GFILM-KKKYK 246 (1342)
Q Consensus 180 ~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~~l~----~~Divv~S~sK~l~gp~G---G~iv~-~~~l~ 246 (1342)
. .++++|+++|++||++||+|++|+.+.+.+ ....+... ..+++++|+||++ |+.| ||+++ +++++
T Consensus 165 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~ 243 (377)
T 3fdb_A 165 MVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAW-NIAGLKCAQIIFSNPSDA 243 (377)
T ss_dssp BCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTT-TCGGGCCEEEECCSHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhc-cCcchhheEEEeCCHHHH
Confidence 2 258888999999999999999998755433 12222111 1248899999999 6555 98776 67888
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEEccCCC
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVDLRNKK 324 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~~~~~~ 324 (1342)
+.+.... .+...+++.+.+.++..++... .+++++..+++.++++++.+.|++. |+.+.. +.+++++|+.++...
T Consensus 244 ~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~ 320 (377)
T 3fdb_A 244 EHWQQLS-PVIKDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITP-MQATYLMWIDFRDTT 320 (377)
T ss_dssp HHHHHSC-HHHHCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECC-CSBCSEEEEECTTSC
T ss_pred HHHHHHH-HhhcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEec-CCeeEEEEEECcccC
Confidence 8887642 2223344455555555555443 3467888899999999999999985 788754 456678899988754
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 321 ~~~~~~~~l~~~~gi~v~~g~~~~~~~----~~~~Ris~~~ 357 (377)
T 3fdb_A 321 IEGSPSEFFIEKAKVAMNDGAWFGEDG----TGFCRLNFAT 357 (377)
T ss_dssp CCSCHHHHHHHHHCEECEEGGGGCGGG----TTEEEEECCS
T ss_pred CCHHHHHHHHHhCCEEecCChhccCCC----CCEEEEEeCC
Confidence 456788888888899999876544321 4679999884
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=222.94 Aligned_cols=313 Identities=13% Similarity=0.075 Sum_probs=210.8
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~ 104 (1342)
....+.+++..+++.+++++.+.+.. ++ .....++.+++++++++++|.+ +.+++++||++|+..
T Consensus 19 ~~~~~~pgp~~~~~~v~~a~~~~~~~----------~~--~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~ 86 (376)
T 3f0h_A 19 GMLNFTVGPVMSSEEVRAIGAEQVPY----------FR--TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEA 86 (376)
T ss_dssp SCEECSSSSCCCCHHHHHHHTSCCCC----------CS--SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHH
T ss_pred CceeecCCCCCCcHHHHHHhcCCCCC----------CC--CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHH
Confidence 34667788888899999887654421 01 1233466677888999999987 344557789999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.++++|||+|++....+.++. ........|..+ +.++.+.++.+|++++++.+.+ +++++++++++++ ...+
T Consensus 87 ~~~~~~~~gd~vi~~~~~~~~~~-~~~~~~~~g~~~--~~v~~~~~~~~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~ 162 (376)
T 3f0h_A 87 VVMNCFTKKDKVLVIDGGSFGHR-FVQLCEIHEIPY--VALKLEHGKKLTKEKLYEYDNQ-NFTGLLVNVDETSTAVLYD 162 (376)
T ss_dssp HHHHHCCTTCCEEEEESSHHHHH-HHHHHHHTTCCE--EEEECCTTCCCCHHHHHTTTTS-CCCEEEEESEETTTTEECC
T ss_pred HHHhccCCCCeEEEEeCChhhHH-HHHHHHHcCCce--EEEeCCCCCCCCHHHHHHhhcc-CceEEEEecccCCcceecC
Confidence 99999999999998764332221 123345556644 4445566788999999987654 4566666554444 4558
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCc---
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPG--- 256 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~--- 256 (1342)
+++|+++|++||++||+|++|+.+... . ... .+|++++|+||+++|+.| |++++++++++.+.......
T Consensus 163 l~~i~~l~~~~~~~li~D~~~~~~~~~----~-~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~ 237 (376)
T 3f0h_A 163 TMMIGEFCKKNNMFFVCDCVSAFLADP----F-NMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYF 237 (376)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTSC----C-CHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTT
T ss_pred HHHHHHHHHHcCCEEEEEcCccccCcc----c-cccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceee
Confidence 999999999999999999998876441 1 111 268999999999966778 99999999888876532111
Q ss_pred -------------cccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC
Q psy13354 257 -------------IQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 257 -------------~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~ 322 (1342)
...++.....+++..++...... +++...+++.++++++.+.|.+.|+++..+.....++.+. +.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~ 316 (376)
T 3f0h_A 238 DLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVH-PT 316 (376)
T ss_dssp CHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEE-ES
T ss_pred cHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEe-CC
Confidence 11233333334444444444333 4778889999999999999999888765432223333333 22
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.....++...+++++||.+.++..+ ...+.+|++++..++
T Consensus 317 ~~~~~~l~~~l~~~~gi~v~~g~~~------~~~~~lRis~~~~~t 356 (376)
T 3f0h_A 317 TANAYDIFLKLKDEYGIWICPNGGE------MKDTIFRVGHIGALT 356 (376)
T ss_dssp SSCHHHHHHHHHHHSSEECEECCGG------GTTTCEEEECCSSCC
T ss_pred CCCHHHHHHHHHHhCCEEEecCccc------cCCCEEEEecCCCCC
Confidence 2334566667766669999876221 124579999887655
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=224.27 Aligned_cols=318 Identities=13% Similarity=0.052 Sum_probs=217.0
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC----CC-ceEecCCHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA----EA-ANVQPHSGS 99 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~----~~-~vi~~~sGs 99 (1342)
++.|.+..+++.+ ++.+.+++.+.+... .+|+ ...+..++++++++++.+.+|. .+ .+++++||+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~------~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~ 101 (396)
T 3jtx_A 30 MEAVPLHIGEPKHPTPKVITDALTASLHEL--EKYP------LTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSR 101 (396)
T ss_dssp CCCEECSCCSCCSCCCHHHHHHHHHTGGGG--GSCC------CTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHH
T ss_pred CCeEEeCCcCCCCCCCHHHHHHHHHHhhhc--cCCC------CCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcH
Confidence 3568888877544 455888887766321 1222 2333458888888888888774 24 566676999
Q ss_pred HHHHHHHHHccCCC-----CEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEc
Q psy13354 100 QANQAVFFSVLNPG-----DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAG 173 (1342)
Q Consensus 100 ~A~~~al~al~~pG-----D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~ 173 (1342)
+|+..++.+++.+| |+|++..+.|+ .....+...|..+..+ +.+ +++.+|++++++.+++ ++++++++
T Consensus 102 ~al~~~~~~~~~~g~~~~~d~vl~~~p~~~---~~~~~~~~~g~~~~~v--~~~~~g~~~d~~~l~~~~~~-~~~~v~l~ 175 (396)
T 3jtx_A 102 EALFSFVQTVLNPVSDGIKPAIVSPNPFYQ---IYEGATLLGGGEIHFA--NCPAPSFNPDWRSISEEVWK-RTKLVFVC 175 (396)
T ss_dssp HHHHHHHHHHCCC---CCCCEEEEEESCCH---HHHHHHHHTTCEEEEE--ECCTTTCCCCGGGSCHHHHH-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCCccCCCEEEEcCCCcH---hHHHHHHHcCCEEEEe--ecCCCCCccCHHHHHHhhcc-CcEEEEEE
Confidence 99999999999997 79998775544 3444556677754444 544 4557899999998887 45666665
Q ss_pred CCCCC--ccc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---------CCCcEEEecCCccCCCCCe---
Q psy13354 174 ASAYS--QYI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---------PFADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 174 ~s~~~--~~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---------~~~Divv~S~sK~l~gp~G--- 236 (1342)
++++| ... ++++|+++|++||++||+||+|+.+.+......+.. ...+++++|+||++ ++.|
T Consensus 176 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~ 254 (396)
T 3jtx_A 176 SPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRS-NVPGLRS 254 (396)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTS-SCGGGCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEecccccc-CCcccce
Confidence 66666 222 466799999999999999999986544331222211 23468899999988 5555
Q ss_pred eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEE
Q psy13354 237 GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHII 316 (1342)
Q Consensus 237 G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v 316 (1342)
||+++++++++.+......+. .+++.+.+.++..++. . .+++++.++++.++++++.+.|.+. +.+. .+.+++++
T Consensus 255 G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~-~-~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~-~~~~~~~~ 329 (396)
T 3jtx_A 255 GFVAGDAELLKNFLLYRTYHG-SAMSIPVQRASIAAWD-D-EQHVIDNRRLYQEKFERVIPILQQV-FDVK-LPDASFYI 329 (396)
T ss_dssp EEEEECHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHH-C-CHHHHHHHHHHHHHHHHHHHHHTTT-SCCC-CCSSSSEE
T ss_pred EEEEeCHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHhC-C-HHHHHHHHHHHHHHHHHHHHHHHhc-CCcc-CCCeeEEE
Confidence 999999998888876433222 2344555555554443 2 3477888899999999999999875 3332 34567899
Q ss_pred EEEccCCCCCHHHHHHHHHHCCceeeeccCCCCC--CCccccccccccccc
Q psy13354 317 LVDLRNKKITGKIAESILESANIICNKNSIPNDP--EKPYFTSGIRLGSSA 365 (1342)
Q Consensus 317 ~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~--~~~~~~~~lRi~~~~ 365 (1342)
|+.++. ..+.++...+++++||.+.++..++.. ......+++|++++.
T Consensus 330 ~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~ 379 (396)
T 3jtx_A 330 WLKVPD-GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA 379 (396)
T ss_dssp EEECTT-SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS
T ss_pred EEECCC-CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC
Confidence 999876 335677777878789999987665542 001124679999875
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-20 Score=217.00 Aligned_cols=301 Identities=13% Similarity=0.100 Sum_probs=209.9
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
.+.+.+..+++.+ ++.+++++.+.+.. ..+|+ ..+..+ +++.+++++|.+ +.+++++||++|+.
T Consensus 16 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~-------~~~~~~----l~~~la~~~~~~~~~i~~~~g~~~a~~ 82 (354)
T 3ly1_A 16 DNPIRINFNENPLGMSPKAQAAARDAVVK--ANRYA-------KNEILM----LGNKLAAHHQVEAPSILLTAGSSEGIR 82 (354)
T ss_dssp SSCEECSSCCCSSCCCHHHHHHHHHTGGG--TTSCC-------HHHHHH----HHHHHHHHTTSCGGGEEEESHHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHhh--CcCCC-------CCchHH----HHHHHHHHhCCChHHEEEeCChHHHHH
Confidence 3568888887664 45588888877642 11221 223334 555899999975 55666658899999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh-cCCeEEEEcCCCCC--cc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK-NKPKLIIAGASAYS--QY 180 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~-~~~~liv~~~s~~~--~~ 180 (1342)
.++.+++++||+|++..+.++ .....+...|. +++.++.++++.+|++++++.+++ .++++++++++++| ..
T Consensus 83 ~~~~~l~~~gd~vl~~~~~~~---~~~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~ 157 (354)
T 3ly1_A 83 AAIEAYASLEAQLVIPELTYG---DGEHFAKIAGM--KVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTI 157 (354)
T ss_dssp HHHHHHCCTTCEEEEESSSCT---HHHHHHHHTTC--EEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCC
T ss_pred HHHHHHhCCCCeEEECCCCch---HHHHHHHHcCC--EEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCC
Confidence 999999999999997775544 44455566676 556667776788999999999984 45677776666666 44
Q ss_pred cCHHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC------CCcEEEecCCccCCCCCe---eEEEEechhHHHH
Q psy13354 181 IDFERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP------FADFITSTTHKSLRGPRG---GFILMKKKYKKII 249 (1342)
Q Consensus 181 ~~l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~------~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l 249 (1342)
.+.++|.++|+. ||++||+|++|+.+... +....... ..+++++|+||++ |+.| ||+++++++++.+
T Consensus 158 ~~~~~l~~l~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~ 235 (354)
T 3ly1_A 158 TPADVIEPWIASKPANTMFIVDEAYAEFVND-PRFRSISPMITQGAENIILLKTFSKIH-AMAGMRVGYAVAHPTVIALM 235 (354)
T ss_dssp CCHHHHHHHHHTCCTTEEEEEECTTGGGCCC-TTCCCSHHHHHTTCSSEEEEEESSSTT-CCGGGCCEEEECCHHHHHHH
T ss_pred cCHHHHHHHHHhCCCCeEEEEeccHHHhccc-cccCCHHHHhhhcCCCEEEEeeChhhc-cChhhhheeeecCHHHHHHH
Confidence 477777777776 99999999999855432 22222211 2358899999999 6555 9999999999998
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHH
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKI 329 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~ 329 (1342)
...... .+++.+.+.++..++.. . .++++.++++.++++++.+.|.+.|+.+. +..++++|+.++. ...++
T Consensus 236 ~~~~~~---~~~~~~~~~a~~~~l~~-~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~--~~~~~ 306 (354)
T 3ly1_A 236 GRYVAG---EKINFSGVDAALASMND-S-AFITYSKKSNDVSRQILLKALEDLKLPYL--PSEGNFVFHQLVV--PLKDY 306 (354)
T ss_dssp GGGTTC---SCCCHHHHHHHHHHTTC-H-HHHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCCSSEEEEECSS--CHHHH
T ss_pred HHhcCC---CCCCHHHHHHHHHHhcC-H-HHHHHHHHHHHHHHHHHHHHHHHCCCeEC--CCCceEEEEECCC--CHHHH
Confidence 875444 23445555555444432 2 46778889999999999999998887764 3456778998875 23455
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
...+. ++||.+. ..+++. .+++|++++
T Consensus 307 ~~~l~-~~gi~v~-g~~~~~------~~~iRis~~ 333 (354)
T 3ly1_A 307 QTHMA-DAGVLIG-RAFPPA------DNWCRISLG 333 (354)
T ss_dssp HHHHH-HTTEECC-CCCTTC------TTEEEEECC
T ss_pred HHHHH-HCCEEEe-ecCCCC------CCEEEEEcC
Confidence 55555 5699988 444331 457999976
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=225.02 Aligned_cols=307 Identities=20% Similarity=0.221 Sum_probs=205.5
Q ss_pred cHHHHHHHhHHHHhccccCCCC-CCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--CCCCEE
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPG-KRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL--NPGDTI 116 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~-~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~--~pGD~V 116 (1342)
+|.+.+++.+.+.. +..+... ...|+......++++ .+++++|.++.++++ +|+.++..++.++. .|||+|
T Consensus 62 ~p~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~----~la~~~~~~~~i~~~-sG~~a~~~~~~~l~~~~~gd~V 135 (401)
T 2bwn_A 62 HPVVLAAMHEALEA-VGAGSGGTRNISGTTAYHRRLEA----EIAGLHQKEAALVFS-SAYNANDATLSTLRVLFPGLII 135 (401)
T ss_dssp CHHHHHHHHHHHHH-HCSCCCSBTTTBCCBHHHHHHHH----HHHHHTTCSEEEEES-CHHHHHHHHHHHHHHHSTTCEE
T ss_pred CHHHHHHHHHHHHH-cCCCCCCcCcccCChHHHHHHHH----HHHHHhCCCcEEEEC-CcHHHHHHHHHHHhcCCCCCEE
Confidence 45699998888753 3222111 112333444555555 888899988777776 88888888877763 599999
Q ss_pred EEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---cCCeEEEEcCCCCC--cccCHHHHHHHHH
Q psy13354 117 MGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---NKPKLIIAGASAYS--QYIDFERFYHIAK 191 (1342)
Q Consensus 117 lv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~~~~liv~~~s~~~--~~~~l~~I~~la~ 191 (1342)
++....|+ +....+...|. +++.++.+ |++++++.+.. .+++++++++++++ ...++++|+++|+
T Consensus 136 l~~~~~~~---~~~~~~~~~g~--~~~~v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 205 (401)
T 2bwn_A 136 YSDSLNHA---SMIEGIKRNAG--PKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAE 205 (401)
T ss_dssp EEETTCCH---HHHHHHHHSCC--CEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred EECchhhH---HHHHHHHHcCC--eEEEEcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHH
Confidence 97775544 44444556676 44445554 78999998874 34677777666655 4559999999999
Q ss_pred HcCCEEEEEcccchhhhhc-CCC----CCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCcccc-CCcHHH
Q psy13354 192 NINSYFMVDMAHYAGLIAA-GEY----PNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQG-GPLMHV 265 (1342)
Q Consensus 192 ~~gi~LIvDea~~~g~~~~-~~~----~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~-~~~~~~ 265 (1342)
+||++||+|++|+.|.++. +.. ....+..|++++|+||++ |+.|||+++++++++.+.....++.++ +.+...
T Consensus 206 ~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~-~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 284 (401)
T 2bwn_A 206 EFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY-GVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAI 284 (401)
T ss_dssp HHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTT-CSCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHH
T ss_pred HcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhc-cCCCCEEecCHHHHHHHHHhCcCceecCCCCHHH
Confidence 9999999999999776532 110 011122589999999999 667899999998888776432222221 222344
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeecc
Q psy13354 266 IAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 266 ~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
++++..++......++++.++++.++++++.+.|.+.|+++.. +.++++|+.++......++...+++++||.+.+..
T Consensus 285 ~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~ 362 (401)
T 2bwn_A 285 AAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIID--HGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPIN 362 (401)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC--CSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEEC
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccC--CCCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecC
Confidence 4444444443333235778899999999999999988877643 23457888876422234566667656699999877
Q ss_pred CCCCCCCcccccccccccccccc
Q psy13354 346 IPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 346 ~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.|+.+.+ .+++|++++..++
T Consensus 363 ~~~~~~~---~~~iRis~~~~~t 382 (401)
T 2bwn_A 363 FPTVPRG---TERLRFTPSPVHD 382 (401)
T ss_dssp TTTSCTT---CCEEEECCCTTSC
T ss_pred CCCCCCC---CceEEEEeeCCCC
Confidence 6655422 3579999987655
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-20 Score=217.19 Aligned_cols=305 Identities=13% Similarity=0.116 Sum_probs=209.5
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC-C-CceEecCCHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA-E-AANVQPHSGSQAN 102 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~-~-~~vi~~~sGs~A~ 102 (1342)
++.|.|..+++.+ ++.+.+++.+.+......+|+. ....++++ .+++++|. + +.+++++||++|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-------~~~~~l~~----~la~~~g~~~~~~i~~~~g~t~a~ 98 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-------PSSEALRA----KLKEVMQVPAGMEVLLGNGSDEII 98 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-------CCHHHHHH----HHHHHHTCCTTCEEEEEEHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-------CcHHHHHH----HHHHHhCCCCcceEEEcCCHHHHH
Confidence 3558888888764 5569999888875322222221 23445555 88888898 3 4556665889999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cc-
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QY- 180 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~- 180 (1342)
..++.+++++||+|++....++++. ..+...|. +++.++.++++.+|++++++.+++.++++++++++++| +.
T Consensus 99 ~~~~~~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 173 (367)
T 3euc_A 99 SMLALAAARPGAKVMAPVPGFVMYA---MSAQFAGL--EFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNL 173 (367)
T ss_dssp HHHHHHTCCTTCEEEEEESCSCCSC---HHHHTTTC--EEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCC
T ss_pred HHHHHHHcCCCCEEEEcCCCHHHHH---HHHHHcCC--eEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCC
Confidence 9999999999999998876665543 33455666 55566767788899999999998755666666566665 22
Q ss_pred ---cCHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCC-CCCeeEEEEechhHHHHhhc
Q psy13354 181 ---IDFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLR-GPRGGFILMKKKYKKIINSA 252 (1342)
Q Consensus 181 ---~~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~-gp~GG~iv~~~~l~~~l~~~ 252 (1342)
.++++|+++|++| |+++|+|++|+.... ........ ..+++++|+||+.. |...||+++++++++.+...
T Consensus 174 ~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~ 251 (367)
T 3euc_A 174 FDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQ--ESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQWLEQLDKV 251 (367)
T ss_dssp CCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSS--CCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHHHHHHHGGG
T ss_pred CCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcc--cchHHHHhhCCCEEEEecchhhcccccCceeeeeCHHHHHHHHHh
Confidence 3688999999999 999999999875321 11111111 23588999999931 12229999999999888775
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
...+ +++...+.++..++.. .+++++..+++.++++++.+.|.+. |+.+. +..++++|+.++ ...++..
T Consensus 252 ~~~~---~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~--~~~~~~~~~~~~---~~~~l~~ 321 (367)
T 3euc_A 252 RPPY---NVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVF--PSAANFLLARVP---DAAQTFD 321 (367)
T ss_dssp CCSS---CCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC--CCSSSEEEEECS---CHHHHHH
T ss_pred CCCC---CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC--CCCCeEEEEECC---CHHHHHH
Confidence 4433 2334455554444433 3467888899999999999999987 88753 356778888886 2334444
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
. +.++||.+.++..+.. ...+++|++++
T Consensus 322 ~-l~~~gi~v~~~~~~~~----~~~~~iRis~~ 349 (367)
T 3euc_A 322 R-LLARKVLIKNVSKMHP----LLANCLRVTVS 349 (367)
T ss_dssp H-HHTTTEECEECGGGCG----GGTTEEEEECC
T ss_pred H-HHHCCeEEEECCccCC----CCCCEEEEecC
Confidence 4 5667999997654321 12467999976
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=215.24 Aligned_cols=300 Identities=13% Similarity=0.080 Sum_probs=209.9
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
.+.|.+..+++++ ++.+.+++.+.+.. + .+|+ .....++ ++.+++++|.+ +.+++++||++|+.
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~-~~y~-------~~~~~~l----r~~la~~~~~~~~~v~~~~g~t~a~~ 98 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSSVE-T-EIYP-------DGWASSL----RKEVADFYQLEEEELIFTAGVDELIE 98 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCBSC-C-CBC-----------CHHH----HHHHHHHHTCCGGGEEEESSHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHHH-h-hcCC-------CcchHHH----HHHHHHHhCCChhhEEEeCCHHHHHH
Confidence 3568888887765 45588887765421 1 1121 1222344 44888888875 55666669999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++.+++++||+|++....++ .....+...|. +++.++.++++.+|++++++.+++ +++++++++++++ ...
T Consensus 99 ~~~~~~~~~gd~vl~~~~~~~---~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~ 172 (363)
T 3ffh_A 99 LLTRVLLDTTTNTVMATPTFV---QYRQNALIEGA--EVREIPLLQDGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYI 172 (363)
T ss_dssp HHHHHHCSTTCEEEEEESSCH---HHHHHHHHHTC--EEEEEECCTTSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCC
T ss_pred HHHHHHccCCCEEEEcCCChH---HHHHHHHHcCC--EEEEecCCCCCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCc
Confidence 999999999999998775444 44445566676 455556666788999999999875 4566666666665 445
Q ss_pred CHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechhHHHHhh
Q psy13354 182 DFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKYKKIINS 251 (1342)
Q Consensus 182 ~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~ 251 (1342)
+.++|.++|+.+ |+++|+|++|+.+.. +....... ..+++++|+||++ |+.| ||+++++++++.+..
T Consensus 173 ~~~~l~~l~~~~~~~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~l~~ 249 (363)
T 3ffh_A 173 ELADIQAFLDRVPSDVLVVLDEAYIEYVT--PQPEKHEKLVRTYKNLIITRTFSKIY-GLASARVGYGIADKEIIRQLNI 249 (363)
T ss_dssp CHHHHHHHHTTSCTTSEEEEECTTGGGCS--SCCCCCGGGGGTCTTEEEEEESSSTT-CCSSCCCEEEEECHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCcEEEEeCchHhhcC--ccccCHHHHhhcCCCEEEEeechhhh-cCchhceeeeecCHHHHHHHHH
Confidence 888998888887 999999999986544 22222221 1347889999999 6555 999999999998887
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-CCcEEeeCCCCCeEEEEEccCCCCCHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-RGIRIVSGGTKSHIILVDLRNKKITGKIA 330 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~g~~~~~~~~~~~~v~i~~~~~~~~~~~~ 330 (1342)
...++ +++...+.++..++. .. +++++.++++.++++++.+.|.+ .|+.+.. ..++++|+.++. ...++.
T Consensus 250 ~~~~~---~~~~~~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~--~~~~~~~~~~~~--~~~~~~ 320 (363)
T 3ffh_A 250 VRPPF---NTTSIGQKLAIEAIK-DQ-AFIGECRTSNANGIKQYEAFAKRFEKVKLYP--ANGNFVLIDLGI--EAGTIF 320 (363)
T ss_dssp TCCSC---CCBHHHHHHHHHHHH-CH-HHHHHHHHHHHHHHHHHHHHHHHCTTCEECC--CCSSEEEEECSS--CHHHHH
T ss_pred hCCCC---CCCHHHHHHHHHHhc-CH-HHHHHHHHHHHHHHHHHHHHHhhCCCceECC--CCCeEEEEECCC--CHHHHH
Confidence 54432 334445555554443 22 46788889999999999999999 7888743 456788998875 344555
Q ss_pred HHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 331 ESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 331 ~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
..+. ++||.+.++..++. .+++|++++
T Consensus 321 ~~l~-~~gi~v~~g~~~~~------~~~iRis~~ 347 (363)
T 3ffh_A 321 SYLE-KNGYITRSGAALGF------PTAVRITIG 347 (363)
T ss_dssp HHHH-HTTEECEETTTTTC------TTEEEEECC
T ss_pred HHHH-HCCeEEEeCccCCC------CCeEEEECC
Confidence 5555 56999998766543 347999977
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-20 Score=227.75 Aligned_cols=317 Identities=15% Similarity=0.052 Sum_probs=207.9
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh--CCC-CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF--NAE-AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~--g~~-~~vi~~~sGs~A 101 (1342)
.+.|.|..+++. .+|.+.+++.+.+.. +.. ......|+...+..++++++++++. . +.+ +.+++++|++++
T Consensus 69 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-~~~-~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~a 144 (449)
T 3qgu_A 69 AKIISLGIGDTTEPLPKYIADAMAKAAAG-LAT-REGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFISDGSKCD 144 (449)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHHHG-GGG-SCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHH
T ss_pred CCEEEeeCCCCCCCCCHHHHHHHHHHHHh-hcc-ccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEEccCHHHH
Confidence 356888777643 556699998888853 221 1112234444556678885555544 2 333 566677688889
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCce--------eEEEEecCCC--CCCCCHHHHHHHHHhcCCeEEE
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKW--------FNSICYGLNK--KEKIDYKKVEYLAKKNKPKLII 171 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~--------~~~v~~~~~~--~~~id~e~Le~~i~~~~~~liv 171 (1342)
+..+ .+++++||+|++..+.|+++. ..+...|.. .+++.+++++ .+..|++.+ .++++++
T Consensus 145 l~~~-~~l~~~gd~Vl~~~p~~~~~~---~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~ 214 (449)
T 3qgu_A 145 IARI-QMMFGSKPTVAVQDPSYPVYV---DTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------KRTDIIF 214 (449)
T ss_dssp HHHH-HHHHCSSSCEEEEESCCTHHH---HHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC------CCCSEEE
T ss_pred HHHH-HHHhCCCCEEEEcCCCChhHH---HHHHHcCCcccccccccceeEEEecccccCCcCChhHc------CCCCEEE
Confidence 9888 888999999998876665543 334444543 1144445543 444454322 3456666
Q ss_pred EcCCCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-----CCCcEEEecCCccCCCCCe---eE
Q psy13354 172 AGASAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-----PFADFITSTTHKSLRGPRG---GF 238 (1342)
Q Consensus 172 ~~~s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-----~~~Divv~S~sK~l~gp~G---G~ 238 (1342)
+++++|| +. .++++|+++|++||++||+||+|+.+.+.+....... ...+++++|+||++ |+.| ||
T Consensus 215 l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~ 293 (449)
T 3qgu_A 215 FCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYA-GFTGVRLGW 293 (449)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGG-TCTTCCCEE
T ss_pred EeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhc-CCccceeEE
Confidence 6666666 22 2589999999999999999999987554332221111 12468899999999 6555 99
Q ss_pred EEEechhHH--------HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC
Q psy13354 239 ILMKKKYKK--------IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG 310 (1342)
Q Consensus 239 iv~~~~l~~--------~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~ 310 (1342)
+++++++++ .+... ....+++++.+.+.++..++.....++.++.++++.++++++.+.|.+.|+.+.. +
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~ 371 (449)
T 3qgu_A 294 TVVPKALKYANGEPVHADWNRV-MTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYG-G 371 (449)
T ss_dssp EECCTTCBCTTSCBHHHHHHHH-HHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-S
T ss_pred EecCHHHHhhhhhhHHHHHHHH-hhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeC-C
Confidence 999987654 22221 1223334456666666555544222467788999999999999999999988754 4
Q ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 311 TKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 311 ~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+++++|+.++ ...+.+++..+++++||.+.++..++.. +.+++|+++..
T Consensus 372 ~~~~~~~~~~~-~~~~~~~~~~l~~~~gI~v~pg~~f~~~----~~~~iRis~~~ 421 (449)
T 3qgu_A 372 DDAPYIWVGFP-GKPSWDVFAEILERCNIVTTPGSGYGPA----GEGFVRASAFG 421 (449)
T ss_dssp SSSSEEEEECT-TSCHHHHHHHHHHHHCEECEEGGGGCGG----GTTEEEEECCS
T ss_pred CCeeEEEEECC-CCCHHHHHHHHHHHCCEEEecchHhCCC----CCCeEEEEecC
Confidence 56889999998 3345677888888789999987655432 24679998644
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-20 Score=222.86 Aligned_cols=348 Identities=12% Similarity=0.041 Sum_probs=230.9
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLK 83 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la 83 (1342)
+++...++..+..+..... ....|.+..+.+. .++.+.+++.+.+.. ... ....|+...+..++++++++++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~---~~~~y~~~~g~~~l~~~la~~l~ 91 (429)
T 1yiz_A 17 KRYQGSTKSVWVEYIQLAA-QYKPLNLGQGFPDYHAPKYALNALAAAANS-PDP---LANQYTRGFGHPRLVQALSKLYS 91 (429)
T ss_dssp SSCCCCTTCHHHHHHHHHH-HHCCEECCSSSCSSCCCHHHHHHHHHHHTC-SCG---GGGSCCCSSCCHHHHHHHHHHHH
T ss_pred HHhhhCCchHHHHHHHHhc-cCCEEEecCCCCCCCCCHHHHHHHHHHHhc-ccc---CccCCCCCCCcHHHHHHHHHHHH
Confidence 4555555555555544322 3456777777543 446688998887742 100 11123333445688888888888
Q ss_pred HHhCCC---C-ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--------CC
Q psy13354 84 KIFNAE---A-ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--------KE 151 (1342)
Q Consensus 84 ~~~g~~---~-~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--------~~ 151 (1342)
+.+|.+ + .+++++||++|+..++.+++.+||+|++....++++ ...+...|..+..++++.+. ++
T Consensus 92 ~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 168 (429)
T 1yiz_A 92 QLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCY---EPMVKAAGGIPRFIPLKPNKTGGTISSADW 168 (429)
T ss_dssp HHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTH---HHHHHHTTCEEEEEECBCCCSSSSEEGGGC
T ss_pred HHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhH---HHHHHHcCCEEEEEeCCcccccccccccCc
Confidence 777742 4 667776889999999999999999999887655543 34445667644444433221 56
Q ss_pred CCCHHHHHHHHHhcCCeEEEEcCCCCC-ccc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C---CCCc
Q psy13354 152 KIDYKKVEYLAKKNKPKLIIAGASAYS-QYI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V---PFAD 221 (1342)
Q Consensus 152 ~id~e~Le~~i~~~~~~liv~~~s~~~-~~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l---~~~D 221 (1342)
.+|++.+++.+++ ++++++++++++| +.. ++++|+++|++||++||+||+|+.+.+.+..+.+. + ...|
T Consensus 169 ~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 247 (429)
T 1yiz_A 169 VLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERT 247 (429)
T ss_dssp BCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGE
T ss_pred ccCHHHHHHHhcc-CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCce
Confidence 7899999998864 4566666566655 222 59999999999999999999998654432222211 1 1258
Q ss_pred EEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHh----c--cchHHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV----L--KPDFKIYQKQVVKNA 292 (1342)
Q Consensus 222 ivv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~----l--~~~~~~~~~~l~~~a 292 (1342)
++++|+||++ |+.| ||+++++++++.+........+ +.+.+.+.++..++... . ..++++.++++.+++
T Consensus 248 ~~~~s~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (429)
T 1yiz_A 248 ITIGSAGKTF-SLTGWKIGWAYGPEALLKNLQMVHQNCVY-TCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKR 325 (429)
T ss_dssp EEEEEHHHHH-TCGGGCCEEEESCHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHH
T ss_pred EEEecchhcc-CCCCcceEEEEeCHHHHHHHHHHHhhccc-CCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHH
Confidence 9999999999 6566 9999999988887654322222 23455555555555441 2 446888889999999
Q ss_pred HHHHHHHHhCCcEEeeCCCCCeEEEEEccCC------------CCCHHHHHHHHHHCCceeeeccCCCCCCC-ccccccc
Q psy13354 293 KILSKILDQRGIRIVSGGTKSHIILVDLRNK------------KITGKIAESILESANIICNKNSIPNDPEK-PYFTSGI 359 (1342)
Q Consensus 293 ~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~------------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~-~~~~~~l 359 (1342)
+++.+.|.+.|+.+.. +..++++|++++.. ..+.+++..+++++||.+.++..+..... ....+++
T Consensus 326 ~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~i 404 (429)
T 1yiz_A 326 DYMASFLAEVGMNPTV-PQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFV 404 (429)
T ss_dssp HHHHHHHHHHTCEEEE-CSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEE
T ss_pred HHHHHHHHhCCCcccC-CCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeE
Confidence 9999999988888754 45678999998753 12345667777678999987643332110 0013579
Q ss_pred cccccc
Q psy13354 360 RLGSSA 365 (1342)
Q Consensus 360 Ri~~~~ 365 (1342)
|++++.
T Consensus 405 Ris~~~ 410 (429)
T 1yiz_A 405 RYCFFK 410 (429)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 999873
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-20 Score=225.84 Aligned_cols=323 Identities=12% Similarity=0.048 Sum_probs=215.3
Q ss_pred cCceeeeecCC---CCcH-HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--CCceEecCCHHH
Q psy13354 27 NNNIELIASEN---YTSL-AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--EAANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n---~l~~-~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~~~vi~~~sGs~ 100 (1342)
.+.|.|..+.. ..++ .+.+++.+.+...... ...|+...+..++++++++++.+.+|. .+.+++++||++
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~ 151 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADK----ALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQ 151 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHH----HHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHH
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHH----HhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHH
Confidence 45677766542 2233 4888877776431100 011333344568888777777666687 355666669999
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHH----h-cCCeEEE-EcC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAK----K-NKPKLII-AGA 174 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~----~-~~~~liv-~~~ 174 (1342)
|+..++.+++++||+|++..+.|++ ....+...|.. ++.++.++++ +|++++++.++ + .++++++ +++
T Consensus 152 al~~~~~~l~~~Gd~Vlv~~p~y~~---~~~~~~~~g~~--~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~ 225 (448)
T 3aow_A 152 ALDLIGRVFLNPGDIVVVEAPTYLA---ALQAFNFYEPQ--YIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPT 225 (448)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCHH---HHHHHHTTCCE--EEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred HHHHHHHHHcCCCCEEEEeCCChHH---HHHHHHHcCCE--EEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCC
Confidence 9999999999999999987755543 44445566764 4445555444 89999999987 4 2567764 455
Q ss_pred CCCC-c-cc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC----CCcEEEecCCccCCCCCe---eEEEEe
Q psy13354 175 SAYS-Q-YI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----FADFITSTTHKSLRGPRG---GFILMK 242 (1342)
Q Consensus 175 s~~~-~-~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----~~Divv~S~sK~l~gp~G---G~iv~~ 242 (1342)
++|| + .. ++++|+++|++||++||+||+|+.+.+.+....+... ..+++++||||++ + .| ||++++
T Consensus 226 ~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~-~-~GlriG~v~~~ 303 (448)
T 3aow_A 226 FQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKIL-A-PGFRIGWMVGD 303 (448)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTT-C-GGGCCEEEEEC
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhc-c-ccccEEEEEeC
Confidence 5555 2 22 4789999999999999999999876553322222211 2468899999999 5 55 999999
Q ss_pred chhHHHHhhccCCccccCCcHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhC---CcEEeeCCCCCeEEEE
Q psy13354 243 KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-LKPDFKIYQKQVVKNAKILSKILDQR---GIRIVSGGTKSHIILV 318 (1342)
Q Consensus 243 ~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-l~~~~~~~~~~l~~~a~~l~~~L~~~---g~~~~~~~~~~~~v~i 318 (1342)
+++++.+......+.++ ++...+.++..++... ...+++..++.+.++++++.+.|.+. |+.+.. +.+++++|+
T Consensus 304 ~~l~~~l~~~~~~~~~~-~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~-p~~g~~~~v 381 (448)
T 3aow_A 304 PGIIRKMEIAKQSTDLC-TNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTK-PEGGMFIWV 381 (448)
T ss_dssp HHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECC-CSBSSEEEE
T ss_pred HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeC-CCccEEEEE
Confidence 99988887643333333 3445555554444332 13367777888889999999999874 677643 456789999
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
.++....+.+++..++++ ||.+.++..+..... ..+++|++++..
T Consensus 382 ~~~~~~~~~~l~~~l~~~-gV~v~pg~~f~~~~~--~~~~iRls~~~~ 426 (448)
T 3aow_A 382 TLPDGIDSKKMLERAIKK-GVAYVPGEAFYAHRD--VKNTMRLNFTYV 426 (448)
T ss_dssp ECSTTCCHHHHHHHHHHT-TEECEEGGGGSTTCC--CCSEEEEECSSS
T ss_pred EcCCCCCHHHHHHHHHHC-CcEEEcchhhcCCCC--CCCEEEEEeCCC
Confidence 997644455677777766 999998754432210 145799998763
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-19 Score=219.68 Aligned_cols=329 Identities=16% Similarity=0.158 Sum_probs=214.8
Q ss_pred ceeeeecC-CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC-C-CceEecCCHHHHHHHH
Q psy13354 29 NIELIASE-NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA-E-AANVQPHSGSQANQAV 105 (1342)
Q Consensus 29 ~i~l~a~~-n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~-~-~~vi~~~sGs~A~~~a 105 (1342)
.+.|..+. +..++.+.+++.+.+.+.. +.+....+............+++.+++++|. + +.+++++||++|+..+
T Consensus 29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~ 106 (420)
T 1t3i_A 29 LVYLDNAATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLV 106 (420)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhcc--CCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHH
Confidence 46666554 4566779999888875322 1221111111111123344566799999998 3 5566666999999999
Q ss_pred HHHc----cCCCCEEEEeeccCCccchh-hHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 106 FFSV----LNPGDTIMGMSLQEGGHLTH-GMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 106 l~al----~~pGD~Vlv~~~~~~~~~s~-~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
+.++ +.+||+|+++...|++.... .......|. +++.++.++++.+|++++++++++ ++++|++++++++
T Consensus 107 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG 183 (420)
T 1t3i_A 107 AYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGA--VLKFVQLDEQESFDLEHFKTLLSE-KTKLVTVVHISNTLG 183 (420)
T ss_dssp HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCC--EEEEECBCTTSSBCHHHHHHHCCT-TEEEEEEESBCTTTC
T ss_pred HHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCc--EEEEeccCCCCCcCHHHHHHhhCC-CceEEEEeCCccccc
Confidence 9999 89999999888776654322 233345566 455556667788999999998875 4566666666555
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCc
Q psy13354 179 QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~ 256 (1342)
...++++|.++|++||++||+|++|+.|... ..... ..|++++|+||.+ |+.| |++++++++++.+......+
T Consensus 184 ~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~----~~~~~~~~di~~~s~sK~~-~~~g~G~~~~~~~~~~~~~~~~~~~ 258 (420)
T 1t3i_A 184 CVNPAEEIAQLAHQAGAKVLVDACQSAPHYP----LDVQLIDCDWLVASGHKMC-APTGIGFLYGKEEILEAMPPFFGGG 258 (420)
T ss_dssp BBCCHHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHHSCCCSCST
T ss_pred CcCCHHHHHHHHHHcCCEEEEEhhhccCCcc----CchhhcCCCEEEEehhhhc-CCCceEEEEEchHHHhhcCceecCC
Confidence 4558999999999999999999999876441 01000 2699999999977 7776 99999999888876543321
Q ss_pred --------------------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCC----C
Q psy13354 257 --------------------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGG----T 311 (1342)
Q Consensus 257 --------------------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~----~ 311 (1342)
..+++.....+++..++......+++.+.+++.++++++.+.|.+. |+++..+. .
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 338 (420)
T 1t3i_A 259 EMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGD 338 (420)
T ss_dssp TSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSC
T ss_pred CccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccc
Confidence 1233333333333333333322356778899999999999999986 88876532 1
Q ss_pred CCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCC-Cccc-cccccccccccccc
Q psy13354 312 KSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPE-KPYF-TSGIRLGSSAITTR 369 (1342)
Q Consensus 312 ~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~~-~~~lRi~~~~~~t~ 369 (1342)
.++++++.++. .+.+.+...+.++||.+.++..+..+. ..++ .+.+|++++..++.
T Consensus 339 ~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~ 396 (420)
T 1t3i_A 339 RAALASFNVAG--LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTK 396 (420)
T ss_dssp BCSEEEEEETT--BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCH
T ss_pred cCCEEEEEECC--CCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCH
Confidence 25566667653 233444466667799998764332110 0011 35799999876553
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=219.27 Aligned_cols=301 Identities=15% Similarity=0.121 Sum_probs=211.0
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
.+.|.+..+++++ ++.+++++.+.+.. ..+|+. ... .++++ .+++++|.+ +.+++++||++|+.
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~------~~~-~~lr~----~la~~~~~~~~~v~~~~g~~~a~~ 96 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANK--AHLYPD------DSM-IELKS----TLAQKYKVQNENIIIGAGSDQVIE 96 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGG--TTSCCC------TTC-HHHHH----HHHHHHTCCGGGEEEESSHHHHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHh--hccCCC------CCh-HHHHH----HHHHHhCCCcceEEECCCHHHHHH
Confidence 4668888887765 45699998887742 122322 111 35555 888888876 55666669999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC-CCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL-NKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QY 180 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~-~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~ 180 (1342)
.++.+++++||+|++..+.+ ......+...|. +++.++. ++++ +|++++++.+++ ++++++++++++| ..
T Consensus 97 ~~~~~l~~~gd~vl~~~~~~---~~~~~~~~~~g~--~~~~v~~~~~~~-~d~~~l~~~l~~-~~~~v~~~~p~nptG~~ 169 (365)
T 3get_A 97 FAIHSKLNSKNAFLQAGVTF---AMYEIYAKQCGA--KCYKTQSITHNL-DEFKKLYETHKD-EIKLIFLCLPNNPLGEC 169 (365)
T ss_dssp HHHHHHCCTTCEEEECSSCC---THHHHHHHHHTC--EEEECSSSSCCH-HHHHHHHHHTTT-TEEEEEEESSCTTTCCC
T ss_pred HHHHHHhCCCCEEEEeCCCh---HHHHHHHHHcCC--EEEEEecCCCCC-CCHHHHHHHhCC-CCCEEEEcCCCCCCCCC
Confidence 99999999999999766444 444555566676 5555565 5678 999999999874 5667666666665 44
Q ss_pred cCHHHHHHHHH--HcCCEEEEEcccchhhh--hcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechhHHH
Q psy13354 181 IDFERFYHIAK--NINSYFMVDMAHYAGLI--AAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKYKKI 248 (1342)
Q Consensus 181 ~~l~~I~~la~--~~gi~LIvDea~~~g~~--~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~ 248 (1342)
.+.++|.++++ ++|++||+|++|+.+.+ ......+... ..+++++|+||++ |+.| ||+++++++++.
T Consensus 170 ~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~ 248 (365)
T 3get_A 170 LDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLY-GLGGLRIGYGIANANIISA 248 (365)
T ss_dssp CCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTT-SCTTTCCEEEEECHHHHHH
T ss_pred cCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHh-cCcchheEEEEcCHHHHHH
Confidence 47777777777 67999999999986653 2222222211 2358899999999 5445 999999999988
Q ss_pred HhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHH
Q psy13354 249 INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGK 328 (1342)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~ 328 (1342)
+......+ +++.+.+.++..++.. . +++++.++++.++++++.+.|.+.|+++.. ..++++|+.++.. ...+
T Consensus 249 ~~~~~~~~---~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~--~~~~~~~~~~~~~-~~~~ 320 (365)
T 3get_A 249 FYKLRAPF---NVSNLALKAAVAAMDD-D-EFTEKTLENNFSQMELYKEFAKKHNIKIID--SYTNFITYFFDEK-NSTD 320 (365)
T ss_dssp HHHHSCTT---CSCHHHHHHHHHHHTC-H-HHHHHHHHHHHHHHHHHHHHHHHTTCEECC--CSSSEEEEECSSS-CHHH
T ss_pred HHHhcCCC---CcCHHHHHHHHHHhCC-H-HHHHHHHHHHHHHHHHHHHHHHhCCCEECC--CCCeEEEEECCCC-CHHH
Confidence 87754443 2445555555545442 2 467888999999999999999999888743 4566789998765 3445
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+...+. ++||.+.++..++ .+++|++++
T Consensus 321 ~~~~l~-~~gi~v~~g~~~~-------~~~iRis~~ 348 (365)
T 3get_A 321 LSEKLL-KKGIIIRNLKSYG-------LNAIRITIG 348 (365)
T ss_dssp HHHHHH-TTTEECEECGGGT-------CSEEEEECC
T ss_pred HHHHHH-HCCEEEEECccCC-------CCEEEEEcC
Confidence 555554 5699999876554 246999987
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=222.87 Aligned_cols=333 Identities=15% Similarity=0.137 Sum_probs=223.9
Q ss_pred cchHHHHHHHHHHHhc---cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 11 IDPKIWEIILKEKQRQ---NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 11 ~~~~~~~~~~~~~~~~---~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
.+..++....+ ... ++.+.+..+.+. .++.+.+++.+.+.. ...+ |... ..++++++++++.+.
T Consensus 14 ~g~~~~d~~g~--~~g~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~------y~~~--~~~l~~~la~~l~~~ 82 (399)
T 1c7n_A 14 LGSLKWDLMYS--QNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDE-TVLG------YTGP--TEEYKKTVKKWMKDR 82 (399)
T ss_dssp TTBHHHHHHHH--HCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHH-CCCS------SBCC--CHHHHHHHHHHHHHH
T ss_pred CCccccccchh--hccccCCCceeeeecCCCCCCCHHHHHHHHHHHhc-CCCC------CCCC--cHHHHHHHHHHHHHH
Confidence 44566665432 111 355777777653 345699998888743 1112 2221 568888888888877
Q ss_pred hC--CC-CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-C--CCCCCHHHHH
Q psy13354 86 FN--AE-AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-K--KEKIDYKKVE 159 (1342)
Q Consensus 86 ~g--~~-~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~--~~~id~e~Le 159 (1342)
+| .+ +.+++++||++|+..++.+++++||+|++..+.++ .....+...|. +++.++.+ + ++.+|+++++
T Consensus 83 ~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~---~~~~~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~ 157 (399)
T 1c7n_A 83 HQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYY---PFFMAIKNQER--KIIECELLEKDGYYTIDFQKLE 157 (399)
T ss_dssp HCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCT---HHHHHHHTTTC--EEEECCCEEETTEEECCHHHHH
T ss_pred hCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcH---hHHHHHHHcCC--EEEecccccCCCCEEEcHHHHH
Confidence 77 33 45666669999999999999999999997665444 44444556666 45555553 2 3568999999
Q ss_pred HHHHhcCCeEEEEcCCCCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC------CCcEEEecCC
Q psy13354 160 YLAKKNKPKLIIAGASAYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP------FADFITSTTH 228 (1342)
Q Consensus 160 ~~i~~~~~~liv~~~s~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~------~~Divv~S~s 228 (1342)
+.+++.++++++++++++| ...+ +++|+++|++||++||+||+|+.+.+.+..+.+... ..+++++|+|
T Consensus 158 ~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~s 237 (399)
T 1c7n_A 158 KLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPS 237 (399)
T ss_dssp HHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSH
T ss_pred HHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeCh
Confidence 9997445677776666666 2334 999999999999999999999875543322222211 2358899999
Q ss_pred ccCCCCCe---eEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-C-
Q psy13354 229 KSLRGPRG---GFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-R- 302 (1342)
Q Consensus 229 K~l~gp~G---G~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~- 302 (1342)
|++ |+.| ||++++ +++++.+......+.+++++.+.+.++..++... .++++..++++.++++++.+.|.+ .
T Consensus 238 K~~-~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~ 315 (399)
T 1c7n_A 238 KTF-NIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHP 315 (399)
T ss_dssp HHH-TCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hhc-cccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999 5555 999987 4688887664444434344555555555555432 346778888999999999999988 5
Q ss_pred CcEEeeCCCCCeEEEEEccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 303 GIRIVSGGTKSHIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 303 g~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
|+.+.. +.+++++|+.++.. ....++...+++++||.+.++..+... ..+++|++++..
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~----~~~~iRis~~~~ 375 (399)
T 1c7n_A 316 EIKAPL-IEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDG----GIGFERINLAAP 375 (399)
T ss_dssp TSBCCC-CSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGG----GTTEEEEECCSC
T ss_pred CCeEec-CCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCC----CCCeEEEEeccC
Confidence 776543 45567788998753 234456666666779999987544311 145799998863
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-20 Score=218.35 Aligned_cols=310 Identities=16% Similarity=0.139 Sum_probs=208.3
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCC-c-chHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG-C-KFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~-~-~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~ 103 (1342)
.+.+.+++...++.+++++.+.+ ++ .+.. . ....+ +++++++++|.+ +.+++++||++|+.
T Consensus 5 ~~~~~~gp~~~~~~v~~a~~~~~------~~----~~~~~~~~~~~~----l~~~la~~~g~~~~~~~v~~~~g~t~a~~ 70 (366)
T 1m32_A 5 YLLLTPGPLTTSRTVKEAMLFDS------CT----WDDDYNIGVVEQ----IRQQLTALATASEGYTSVLLQGSGSYAVE 70 (366)
T ss_dssp CEECSSSSCCCCHHHHHTTCCCC------CT----TSHHHHTTTHHH----HHHHHHHHHCSSSSEEEEEEESCHHHHHH
T ss_pred cccccCCCcCCCHHHHHHHhhhh------cC----CCHHHHHHHHHH----HHHHHHHHhCCCCcCcEEEEecChHHHHH
Confidence 46677777677888888876532 11 1110 1 33334 555888888843 24666669999999
Q ss_pred HHHHHccCCCCEEEEee-ccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-CCeEEEEcCCCCC--c
Q psy13354 104 AVFFSVLNPGDTIMGMS-LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-KPKLIIAGASAYS--Q 179 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~-~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-~~~liv~~~s~~~--~ 179 (1342)
.++.+++.+||+|++.+ ..|+.. ........|.. ++.++.++++.+|++++++.+++. ++++++++++++| .
T Consensus 71 ~~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~--~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~ 146 (366)
T 1m32_A 71 AVLGSALGPQDKVLIVSNGAYGAR--MVEMAGLMGIA--HHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGM 146 (366)
T ss_dssp HHHHHSCCTTCCEEEEESSHHHHH--HHHHHHHHTCC--EEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTE
T ss_pred HHHHHhcCCCCeEEEEeCCCccHH--HHHHHHHhCCc--eEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcce
Confidence 99999999999988654 333321 22334555664 444456667889999999999875 4566666555554 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCcc
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~~ 257 (1342)
..++++|.++|++||++||+|++|+.+.... +... .+|++++|+||+++|+.| |++++++++++.+......+.
T Consensus 147 ~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~----~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 1m32_A 147 LNPIDEVGALAHRYGKTYIVDAMSSFGGIPM----DIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLS 222 (366)
T ss_dssp ECCHHHHHHHHHHHTCEEEEECTTTTTTSCC----CTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCST
T ss_pred ecCHHHHHHHHHHcCCEEEEECCccccCcCc----cccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCcc
Confidence 5589999999999999999999998664421 1111 369999999999878888 999999988766654211110
Q ss_pred -----------------ccCCcHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHhCCcEEeeC--CCCCeEEE
Q psy13354 258 -----------------QGGPLMHVIAAKAVAFKEVLKPD-FKIYQKQVVKNAKILSKILDQRGIRIVSG--GTKSHIIL 317 (1342)
Q Consensus 258 -----------------~~~~~~~~~~Aaa~al~~~l~~~-~~~~~~~l~~~a~~l~~~L~~~g~~~~~~--~~~~~~v~ 317 (1342)
.++++...++++..++......+ +++..+++.++++++.+.|.+.|+++..+ +..++++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 302 (366)
T 1m32_A 223 LDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITA 302 (366)
T ss_dssp TCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEE
T ss_pred ccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCceEEE
Confidence 12344455555555554443322 67788999999999999999888766432 12345888
Q ss_pred EEccC--CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 318 VDLRN--KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 318 i~~~~--~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.++. .....++...+.+ +||.+.++..+ ..+++|++++..++
T Consensus 303 ~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~-------~~~~iRi~~~~~~~ 347 (366)
T 1m32_A 303 FYSPEDPQYRFSEFYRRLKE-QGFVIYPGKVS-------QSDCFRIGNIGEVY 347 (366)
T ss_dssp EECCCCTTCCHHHHHHHHHH-TTEECEECCCS-------SSCEEEEECCSSCC
T ss_pred EEcCccCCCCHHHHHHHHHH-CCEEEECCcCC-------CCCEEEEecCCCCC
Confidence 88874 2233455555555 59999876433 14579999988655
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-20 Score=221.26 Aligned_cols=310 Identities=17% Similarity=0.131 Sum_probs=213.8
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
+..+.+..+.+. .++.+.+++.+.+.. .. ..|+...+..++++++++++.+.+|.+ +.+++++||++|
T Consensus 41 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~------~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~a 113 (389)
T 1o4s_A 41 EDVINLTAGEPDFPTPEPVVEEAVRFLQK-GE------VKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQA 113 (389)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHTT-CC------CCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHhc-CC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHH
Confidence 456788777654 346688888877742 11 123333455688888888887777752 456666588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++.+||+|++..+.|+++ ...+...|..+ +.++.+ +++.+|++++++.+++ ++++++++++++|
T Consensus 114 l~~~~~~l~~~gd~Vl~~~~~~~~~---~~~~~~~g~~~--~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~npt 187 (389)
T 1o4s_A 114 LFNAFMALLDPGDEVIVFSPVWVSY---IPQIILAGGTV--NVVETFMSKNFQPSLEEVEGLLVG-KTKAVLINSPNNPT 187 (389)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTTH---HHHHHHTTCEE--EEEECCGGGTTCCCHHHHHHTCCT-TEEEEEEESSCTTT
T ss_pred HHHHHHHhCCCCCEEEEcCCCchhH---HHHHHHcCCEE--EEEecCCccCCCCCHHHHHHhccc-CceEEEEcCCCCCC
Confidence 9999999999999999888666544 44456667744 444554 3577899999998865 4566666665555
Q ss_pred -cc---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C---CCCcEEEecCCccCCCCCe---eEEEEechhH
Q psy13354 179 -QY---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V---PFADFITSTTHKSLRGPRG---GFILMKKKYK 246 (1342)
Q Consensus 179 -~~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l---~~~Divv~S~sK~l~gp~G---G~iv~~~~l~ 246 (1342)
.. .++++|+++|++||++||+|++|+.+.+.+ ...+. + ...|++++|+||++ |+.| ||++++++++
T Consensus 188 G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~l~~~~~~~ 265 (389)
T 1o4s_A 188 GVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKSH-SMTGWRVGYLISSEKVA 265 (389)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTTT-TCGGGCCEEEECCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhhc-CCcccceEEEEeCHHHH
Confidence 22 249999999999999999999998765422 21111 1 23589999999999 6555 9999999888
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCC
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKIT 326 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~ 326 (1342)
+.+......+.++. +...+.++..++ ....++..+++.++++++.+.|.+.|+++.. +.+++++|+.++ ...
T Consensus 266 ~~l~~~~~~~~~~~-~~~~~~a~~~~l----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~--~~~ 337 (389)
T 1o4s_A 266 TAVSKIQSHTTSCI-NTVAQYAALKAL----EVDNSYMVQTFKERKNFVVERLKKMGVKFVE-PEGAFYLFFKVR--GDD 337 (389)
T ss_dssp HHHHHHHHHHTCSC-CHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHHHHHHHTTCCCCC-CSBSSEEEEECS--SCH
T ss_pred HHHHHHhhhcccCC-CHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHHHhcCCeeec-CCcceEEEEeCC--CCH
Confidence 88766433333333 233344333332 2235677889999999999999988877643 455778888886 234
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.++...+++++||.+.++..++. .+++|++++.
T Consensus 338 ~~l~~~l~~~~gi~v~~g~~f~~------~~~~Ris~~~ 370 (389)
T 1o4s_A 338 VKFCERLLEEKKVALVPGSAFLK------PGFVRLSFAT 370 (389)
T ss_dssp HHHHHHHHHHHCEECEEGGGGTC------TTEEEEECCS
T ss_pred HHHHHHHHHHCCEEEeCchhcCC------CCeEEEEEeC
Confidence 56777777566999998754432 2469999884
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=222.08 Aligned_cols=318 Identities=14% Similarity=0.130 Sum_probs=214.1
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc--
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL-- 110 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~-- 110 (1342)
++..+.++.+.+++.+.+.+.+ +++.. .+.......++.+++++++++++|.+ +.+++++||++|+..++.++.
T Consensus 7 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~ 83 (382)
T 4hvk_A 7 TSAKPVDERILEAMLPYMTESF--GNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMR 83 (382)
T ss_dssp TTCCCCCHHHHHHHHHHHHTSC--CCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHHhhc--CCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhh
Confidence 3445677889999998886433 33332 23333445667777888999999987 346666699999999999997
Q ss_pred --CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHH
Q psy13354 111 --NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERF 186 (1342)
Q Consensus 111 --~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I 186 (1342)
+|||+|+++...++++......+...|. +++.++.++++.+|++++++.+++ +++++++++++++ ...++++|
T Consensus 84 ~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i 160 (382)
T 4hvk_A 84 NARKGKHILVSAVEHMSVINPAKFLQKQGF--EVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPVEEI 160 (382)
T ss_dssp HGGGCCEEEEETTCCHHHHHHHHHHHHTTC--EEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHHH
T ss_pred hcCCCCEEEECCCCcHHHHHHHHHHHhcCC--EEEEeccCCCCCcCHHHHHHHhcc-CceEEEEECCCCCceeeCCHHHH
Confidence 9999999888777766555545555676 555567777888999999999875 4567777666655 45599999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC------Ccc
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------PGI 257 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------~~~ 257 (1342)
.++|++||+ ||+|++|+.+.... ... .+|++++|+||++ |+.| |+++++++. .+..... ...
T Consensus 161 ~~l~~~~~~-li~D~a~~~~~~~~-----~~~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~--~~~~~~~~~~~~~~~~ 231 (382)
T 4hvk_A 161 SEVLAGKAA-LHIDATASVGQIEV-----DVEKIGADMLTISSNDIY-GPKGVGALWIRKEA--KLQPVILGGGQENGLR 231 (382)
T ss_dssp HHHHSSSSE-EEEECTTTBTTBCC-----CHHHHTCSEEEEESGGGT-SCTTCEEEEEETTC--CCCCSSCSSCTGGGTS
T ss_pred HHHHHHcCE-EEEEhHHhcCCCCC-----CchhcCCCEEEEeHHHhc-CCCceEEEEEcCcc--CcCcccccCCCcCccc
Confidence 999999999 99999998764411 111 3689999999987 7777 888888764 2222111 011
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCC--CeEEEEEccCCCCCHHHHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTK--SHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~--~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
.++++.+...++..++... .+++++..+++.++++++.+.|.+. |+.+..++.. .+++++.++.. +.+.+...+
T Consensus 232 ~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l 308 (382)
T 4hvk_A 232 SGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI--EGESIVLSL 308 (382)
T ss_dssp CSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC--CHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC--CHHHHHHHH
Confidence 2344455555555554433 3477888999999999999999986 7776542211 24666666532 334444555
Q ss_pred HHCCceeeeccCCCCCCC-------cc------ccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEK-------PY------FTSGIRLGSSAITTR 369 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~-------~~------~~~~lRi~~~~~~t~ 369 (1342)
.++||.+.++..+..... .+ ..+++|++++..++.
T Consensus 309 ~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~ 356 (382)
T 4hvk_A 309 DMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTD 356 (382)
T ss_dssp HHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCH
T ss_pred HHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCH
Confidence 667999987643332210 00 036799999876553
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=226.13 Aligned_cols=318 Identities=15% Similarity=0.085 Sum_probs=215.5
Q ss_pred ccCceeeeecCC-----CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCC
Q psy13354 26 QNNNIELIASEN-----YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHS 97 (1342)
Q Consensus 26 ~~~~i~l~a~~n-----~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~s 97 (1342)
.++.+.+..+.+ ..++.+.+++.+.+.... ..|+...+..++++++++++.+.+|.. +.+++++|
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g 109 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-------NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAA 109 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-------CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESH
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCC
Confidence 345677777765 345668888888774311 123333445688888888887776643 45666658
Q ss_pred HHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 98 GSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 98 Gs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
|++|+..++.+++++||+|++..+.|++ ....+...|..+..++++.++++.+|++++++.+++ ++++++++++++
T Consensus 110 ~~~al~~~~~~l~~~gd~Vl~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~n 185 (406)
T 1xi9_A 110 VTEALQLIFGALLDPGDEILVPGPSYPP---YTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD-RTKAIAVINPNN 185 (406)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCHH---HHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT-TEEEEEEESSCT
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCCcc---HHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCc-CceEEEEECCCC
Confidence 8999999999999999999988765543 444556677755555443223567899999998876 456666655555
Q ss_pred C-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C-CCC-cEEEecCCccCCCCCe---eEEE--Eec
Q psy13354 178 S-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V-PFA-DFITSTTHKSLRGPRG---GFIL--MKK 243 (1342)
Q Consensus 178 ~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l-~~~-Divv~S~sK~l~gp~G---G~iv--~~~ 243 (1342)
| +. .++++|+++|++||++||+|++|+.+.+ .+..... + ... +++++|+||++ |+.| ||++ +++
T Consensus 186 ptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~ 263 (406)
T 1xi9_A 186 PTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTY-EGEHISPGSLTKDVPVIVMNGLSKVY-FATGWRLGYMYFVDPE 263 (406)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBS-SSCCCCHHHHCSSSCEEEEEESTTTT-CCGGGCCEEEEEECTT
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHcCCCceEEEEecccccc-CCCccEEEEEEEecCc
Confidence 5 32 2599999999999999999999987654 2222111 1 224 78899999999 5555 9998 888
Q ss_pred ----hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEE
Q psy13354 244 ----KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILV 318 (1342)
Q Consensus 244 ----~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i 318 (1342)
++++.+....... .+++.+.+.++..++. ...+++++.++++.++++++.+.|.+. |+.+.. +.+++++|+
T Consensus 264 ~~~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~ 339 (406)
T 1xi9_A 264 NKLSEVREAIDRLARIR--LCPNTPAQFAAIAGLT-GPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTK-PQGAFYIFP 339 (406)
T ss_dssp CTTHHHHHHHHHHHHHT--CCSCSHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC-CCBSSEECC
T ss_pred hhHHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeec-CCeeEEEEE
Confidence 8888776533222 2333444555444443 233357788899999999999999987 776643 445677887
Q ss_pred EccC--CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 319 DLRN--KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 319 ~~~~--~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.++. .....++...+++++||.+.++..++.. ..+++|++++
T Consensus 340 ~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~----~~~~lRis~~ 383 (406)
T 1xi9_A 340 KIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEY----GAGHFRAVFL 383 (406)
T ss_dssp EECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGG----GTTBEEEECC
T ss_pred ecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCC----CCCEEEEEec
Confidence 7764 2234566777775679999987544321 1357999987
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-19 Score=218.52 Aligned_cols=328 Identities=15% Similarity=0.102 Sum_probs=215.3
Q ss_pred ceeeeecC-CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC-C-CceEecCCHHHHHHHH
Q psy13354 29 NIELIASE-NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA-E-AANVQPHSGSQANQAV 105 (1342)
Q Consensus 29 ~i~l~a~~-n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~-~-~~vi~~~sGs~A~~~a 105 (1342)
.+.+..+. +..++.+.+++.+.+...+ +.+....+............+++.+++++|. + +.+++++||++|+..+
T Consensus 24 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~ 101 (406)
T 1kmj_A 24 LAYLDSAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLV 101 (406)
T ss_dssp CEECCTTTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhhc--CCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHH
Confidence 45555443 4567779999888875422 1221111111111234455577799999998 3 6667776999999999
Q ss_pred HHHc----cCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 106 FFSV----LNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 106 l~al----~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
+.++ +++||+|+++...|++..... ......|. +++.++.++++.+|++++++.+++ ++++|++++++++
T Consensus 102 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG 178 (406)
T 1kmj_A 102 ANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGA--ELRVIPLNPDGTLQLETLPTLFDE-KTRLLAITHVSNVLG 178 (406)
T ss_dssp HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTC--EEEEECBCTTSCBCGGGHHHHCCT-TEEEEEEESBCTTTC
T ss_pred HHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCC--EEEEEecCCCCCcCHHHHHHHhcc-CCeEEEEeCCCcccc
Confidence 9999 899999998887776654332 23445566 455556666788999999998875 4566666665554
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCc
Q psy13354 179 QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~ 256 (1342)
...++++|+++|++||++||+|++|+.|... ..... ..|++++|+||++ |+.| |++++++++++.+.....++
T Consensus 179 ~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~----~~~~~~~~d~~~~s~~K~~-g~~G~G~~~~~~~~~~~~~~~~~~~ 253 (406)
T 1kmj_A 179 TENPLAEMITLAHQHGAKVLVDGAQAVMHHP----VDVQALDCDFYVFSGHKLY-GPTGIGILYVKEALLQEMPPWEGGG 253 (406)
T ss_dssp CBCCHHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHHCCCSSCST
T ss_pred CcCCHHHHHHHHHHcCCEEEEEchhhcCCCC----CcccccCCCEEEEEchhcc-CCCCcEEEEEeHHHHhhcCCcccCC
Confidence 4558999999999999999999999875431 11001 3689999999999 8888 99999999888876533211
Q ss_pred ---------------------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCe
Q psy13354 257 ---------------------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSH 314 (1342)
Q Consensus 257 ---------------------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~ 314 (1342)
..+++.....+++..++......+++...+++.++++++.+.|.+. |+++..+...+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 333 (406)
T 1kmj_A 254 SMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLG 333 (406)
T ss_dssp TSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCS
T ss_pred CceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCC
Confidence 1233333333333334433332367778889999999999999986 787754321345
Q ss_pred EEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCC-ccc-ccccccccccccc
Q psy13354 315 IILVDLRNKKITGKIAESILESANIICNKNSIPNDPEK-PYF-TSGIRLGSSAITT 368 (1342)
Q Consensus 315 ~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~-~~~-~~~lRi~~~~~~t 368 (1342)
++++.+++ ....++. ..+.++||.+.++..+..+.. .++ .+.+|++++..++
T Consensus 334 ~~~~~~~~-~~~~~~~-~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t 387 (406)
T 1kmj_A 334 VIAFNLGK-HHAYDVG-SFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNT 387 (406)
T ss_dssp EEEEEETT-CCHHHHH-HHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCC
T ss_pred EEEEEECC-CCHHHHH-HHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCC
Confidence 56666653 2233444 555667999987643211000 000 3579999987655
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-20 Score=219.86 Aligned_cols=319 Identities=17% Similarity=0.173 Sum_probs=209.5
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc----C
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL----N 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~----~ 111 (1342)
...++.+++++.+.+.+.|. .+... +............+++++++++|.+ +.+++++||++|+..++.++. .
T Consensus 11 ~~~~~~v~~a~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~ 87 (384)
T 1eg5_A 11 TRVDDRVLEEMIVFYREKYG--NPNSA-HGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEK 87 (384)
T ss_dssp CCCCHHHHHHHHHHHHTCCC--CTTCS-SHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHhcCC--CCccc-cHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccC
Confidence 46777899999988864332 22211 1111222344555677999999987 556666699999999999997 7
Q ss_pred CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHH
Q psy13354 112 PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHI 189 (1342)
Q Consensus 112 pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~l 189 (1342)
+||+|+++...|+++......+...|. +++.++.++++.+|++++++.+++ +++++++++++++ ...++++|.++
T Consensus 88 ~gd~vl~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l 164 (384)
T 1eg5_A 88 RKRTIITTPIEHKAVLETMKYLSMKGF--KVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMAANNEVGTIQPVEDVTRI 164 (384)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTC--EEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHHHHH
T ss_pred CCCEEEECCCCchHHHHHHHHHHhcCC--EEEEEccCCCCccCHHHHHHHhCC-CCeEEEEECCCCCcccccCHHHHHHH
Confidence 999999877666554444433455666 556667777788999999998875 4566666666655 45589999999
Q ss_pred HHHcC--CEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechh--HHHHhhcc--CCccccCC
Q psy13354 190 AKNIN--SYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKY--KKIINSAV--FPGIQGGP 261 (1342)
Q Consensus 190 a~~~g--i~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l--~~~l~~~~--~~~~~~~~ 261 (1342)
|++|| ++||+|++|++|... .+... ..|++++|+||++ |+.| |++++++++ ...+.... .....+++
T Consensus 165 ~~~~~~~~~li~Dea~~~~~~~----~~~~~~~~di~~~s~sK~~-g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (384)
T 1eg5_A 165 VKKKNKETLVHVDAVQTIGKIP----FSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGVPIRPLIHGGGQERGLRSGTQ 239 (384)
T ss_dssp HHHHCTTCEEEEECTTTTTTSC----CCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTSCCCCSBCSSCTTTTTBCSCC
T ss_pred HHhcCCceEEEEEhhhhcCCcc----cCchhcCCCEEEecHHHhc-CCCceEEEEEcCCCccccccccCcccccccCCCC
Confidence 99999 999999999855331 11111 3699999999998 8887 999999875 21111100 01123445
Q ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC--CCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 262 LMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT--KSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 262 ~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
+.+.+.++..++.... +++++..+++.++++++.+.|.+.|+++..++. ...++++.+++. ...++.. .|.++||
T Consensus 240 ~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~l~~~gi 316 (384)
T 1eg5_A 240 NVPGIVGAARAMEIAV-EELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI-RGSTLQN-LLSGYGI 316 (384)
T ss_dssp CHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC-CHHHHHH-HHHHTTE
T ss_pred ChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEEEEEeCCC-CHHHHHH-HHhhCCe
Confidence 5666666555554433 367888999999999999999988888754322 134666766532 2334554 4556799
Q ss_pred eeeeccCCCCCC----------C---ccccccccccccccccc
Q psy13354 340 ICNKNSIPNDPE----------K---PYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 340 ~v~~~~~p~~~~----------~---~~~~~~lRi~~~~~~t~ 369 (1342)
.+.++..+.... + ....+++|++++..++.
T Consensus 317 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~ 359 (384)
T 1eg5_A 317 YVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359 (384)
T ss_dssp ECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCH
T ss_pred EEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCH
Confidence 998754222110 0 00135799998875553
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-20 Score=218.99 Aligned_cols=316 Identities=14% Similarity=0.109 Sum_probs=210.3
Q ss_pred cCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc---
Q psy13354 35 SENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL--- 110 (1342)
Q Consensus 35 ~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~--- 110 (1342)
+....++.+++++.+.+.+.+ +++.+ .|.......+....+++++++++|.+ +.+++++||++|+..++.++.
T Consensus 8 ~~~~~~~~v~~a~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~ 84 (382)
T 4eb5_A 8 SAKPVDERILEAMLPYMTESF--GNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRN 84 (382)
T ss_dssp TCCCCCHHHHHHHHHHHHTSC--CCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcc--CCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhc
Confidence 345778889999998885422 33332 12222233456666788999999987 456666699999999999997
Q ss_pred -CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHH
Q psy13354 111 -NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFY 187 (1342)
Q Consensus 111 -~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~ 187 (1342)
++||+|+++...|+++......+...|. +++.++.++++.+|++++++.+++ ++++++++++++| ...++++|.
T Consensus 85 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~ 161 (382)
T 4eb5_A 85 ARKGKHILVSAVEHMSVINPAKFLQKQGF--EVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPVEEIS 161 (382)
T ss_dssp GGGCCEEEEETTCCHHHHHHHHHHTTTTC--EEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHHHH
T ss_pred cCCCCEEEECCCcchHHHHHHHHHHhCCc--EEEEeccCCCCccCHHHHHHHhcC-CCeEEEEeccCCCccccCCHHHHH
Confidence 8999999887666555444433334566 556667777788999999998875 4567777666655 455999999
Q ss_pred HHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC------Cccc
Q psy13354 188 HIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------PGIQ 258 (1342)
Q Consensus 188 ~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------~~~~ 258 (1342)
++|++||++ |+|++|+.|... . .+. ..|++++|+||++ |+.| |+++++++. .+..... ....
T Consensus 162 ~l~~~~~~~-i~D~a~~~g~~~----~-~~~~~~~di~~~s~sK~~-g~~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~ 232 (382)
T 4eb5_A 162 EVLAGKAAL-HIDATASVGQIE----V-DVEKIGADMLTISSNDIY-GPKGVGALWIRKEA--KLQPVILGGGQENGLRS 232 (382)
T ss_dssp HHHTTSSEE-EEECTTTBTTBC----C-CHHHHTCSEEEEETGGGT-CCSSCEEEEEETTC--CCCCSSCSSCTGGGTSC
T ss_pred HHHHHCCCE-EEEcchhcCCcc----c-CccccCCCEEEeehHHhc-CCCceEEEEEcccc--ccCceecCCCccccccC
Confidence 999999999 999999865331 1 111 3689999999997 7877 999988863 1221111 1223
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC--CCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT--KSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
++++.+.+.++..++.... +++++..+++.++++++.+.|.+. |+++..+.. ..+++++.+++ ....++...+.
T Consensus 233 ~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~- 309 (382)
T 4eb5_A 233 GSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY-IEGESIVLSLD- 309 (382)
T ss_dssp SCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT-SCHHHHHHHHH-
T ss_pred CCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCC-cCHHHHHHHHH-
Confidence 4444555555554544333 367788899999999999999986 777644211 14577777763 22345555554
Q ss_pred HCCceeeeccCCCCCC----------C---cccccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPE----------K---PYFTSGIRLGSSAITT 368 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~----------~---~~~~~~lRi~~~~~~t 368 (1342)
++||.+.++..+.... + ....+.+|++++..++
T Consensus 310 ~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~ 355 (382)
T 4eb5_A 310 MAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNT 355 (382)
T ss_dssp HHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCC
T ss_pred HCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCC
Confidence 5699998754211100 0 0013579999887655
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-20 Score=219.54 Aligned_cols=318 Identities=11% Similarity=0.050 Sum_probs=213.1
Q ss_pred CceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHH-HHHHHHHHHHHHhC--CC-CceEecCCHHHH
Q psy13354 28 NNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDL-IEKIAINRLKKIFN--AE-AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~-Le~~~~~~la~~~g--~~-~~vi~~~sGs~A 101 (1342)
+.+.+..+.+. .++.+.+++.+.+.. ...+|+ .. ..+ +++++++++.+.+| .+ +.+++++||++|
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~y~------~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~a 99 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMH-GVFGYS------RW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYM 99 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTT-CCCCCC------CS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhC-CCCCCC------CC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHH
Confidence 45777666643 345699998887742 111222 11 346 88878888887777 33 456666699999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
+..++.+++++||+|++..+.+++ ....+...|..+..++++.+ .++.+|++++++.+++.++++++++++++| +
T Consensus 100 l~~~~~~l~~~gd~vl~~~p~y~~---~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG 176 (390)
T 1d2f_A 100 VSELIRQWSETGEGVVIHTPAYDA---FYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTG 176 (390)
T ss_dssp HHHHHHHSSCTTCEEEEEESCCHH---HHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTC
T ss_pred HHHHHHHhcCCCCEEEEcCCCcHH---HHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCC
Confidence 999999999999999987755443 44445666774444443322 245689999999997645677776666665 2
Q ss_pred -c---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC-C-CcEEEecCCccCCCCCe---eEEEEe-chhHH
Q psy13354 180 -Y---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP-F-ADFITSTTHKSLRGPRG---GFILMK-KKYKK 247 (1342)
Q Consensus 180 -~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~-~-~Divv~S~sK~l~gp~G---G~iv~~-~~l~~ 247 (1342)
. .++++|+++|++||++||+||+|+.+.+.+..+.+. +. . .|. ++|+||++ |+.| ||++++ +++++
T Consensus 177 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~-~~~G~r~G~~~~~~~~~~~ 254 (390)
T 1d2f_A 177 KVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSF-NIPALTGAYGIIENSSSRD 254 (390)
T ss_dssp CCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHH-TCGGGCCEEEEECSHHHHH
T ss_pred cCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhh-cccChhheEEEECCHHHHH
Confidence 2 248999999999999999999998755432222221 11 1 267 99999999 5555 999986 67777
Q ss_pred HHhhccC-CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-C-CcEEeeCCCCCeEEEEEccCC-
Q psy13354 248 IINSAVF-PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-R-GIRIVSGGTKSHIILVDLRNK- 323 (1342)
Q Consensus 248 ~l~~~~~-~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~-g~~~~~~~~~~~~v~i~~~~~- 323 (1342)
.+..... .+.+++++.+.+.++..++.. ..+++++.++++.++++++.+.|.+ . |+.+.. +.+++++|+.++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~ 332 (390)
T 1d2f_A 255 AYLSALKGRDGLSSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQI-PQSTYLAWLDLRPLN 332 (390)
T ss_dssp HHHHHHHTTSCCCSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCC-CSBCSEEEEECGGGC
T ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEec-CCccEEEEEEccccC
Confidence 7765433 233334445555555555543 2346778888999999999999988 4 676533 44567788998753
Q ss_pred CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 324 KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
..+.++...+++++||.+.++..+... ..+++|++++.
T Consensus 333 ~~~~~l~~~l~~~~gi~v~~g~~f~~~----~~~~~Ris~~~ 370 (390)
T 1d2f_A 333 IDDNALQKALIEQEKVAIMPGYTYGEE----GRGFVRLNAGC 370 (390)
T ss_dssp CCHHHHHHHHHHTTCEECEEGGGGCGG----GTTEEEEECCS
T ss_pred CCHHHHHHHHHHHcCEEeeCccccCCC----CCCeEEEEecC
Confidence 234456666665679999987544321 13579999886
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-20 Score=222.27 Aligned_cols=313 Identities=15% Similarity=0.114 Sum_probs=212.8
Q ss_pred CceeeeecCC------CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC-----CC-CceEec
Q psy13354 28 NNIELIASEN------YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN-----AE-AANVQP 95 (1342)
Q Consensus 28 ~~i~l~a~~n------~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g-----~~-~~vi~~ 95 (1342)
+.|.|..+.. +.++.+.+++.+.+......+ |....+..++++ .++++++ .+ +.++++
T Consensus 55 ~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~------y~~~~g~~~lr~----~la~~~~~~~~~~~~~~v~~t 124 (427)
T 3dyd_A 55 TMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNG------YAPSIGFLSSRE----EIASYYHCPEAPLEAKDVILT 124 (427)
T ss_dssp CCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSS------CCCTTCCHHHHH----HHHHHHCBTTBCCCGGGEEEE
T ss_pred CEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCC------CCCCCCcHHHHH----HHHHHHhhcCCCCChHHEEEe
Confidence 3477776652 456669999888875422112 333344456666 6666666 33 555666
Q ss_pred CCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCC
Q psy13354 96 HSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGAS 175 (1342)
Q Consensus 96 ~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s 175 (1342)
+||++|+..++.+++.|||+|+++.+.++ .+...+...|..+..+++..+.++.+|++.+++.+++. +++++++++
T Consensus 125 ~g~t~al~~~~~~l~~~gd~vl~~~p~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~i~~p 200 (427)
T 3dyd_A 125 SGCSQAIDLCLAVLANPGQNILVPRPGFS---LYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEK-TACLIVNNP 200 (427)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEEESCCT---HHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTT-EEEEEEESS
T ss_pred cCcHHHHHHHHHHhcCCCCEEEEcCCCch---hHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC-CCEEEEECC
Confidence 69999999999999999999998775554 44455567787666665544456788999999988764 444455455
Q ss_pred CCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC---C-CcEEEecCCccCCCCCe---eEEEEec
Q psy13354 176 AYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP---F-ADFITSTTHKSLRGPRG---GFILMKK 243 (1342)
Q Consensus 176 ~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~---~-~Divv~S~sK~l~gp~G---G~iv~~~ 243 (1342)
++| ...+ +++|+++|++||+++|+|++|..+.+....+..... . ..++++|+||.| ++.| ||+++++
T Consensus 201 ~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~-~~~G~riG~~~~~~ 279 (427)
T 3dyd_A 201 SNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRW-LVPGWRLGWILIHD 279 (427)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTS-SCGGGCCEEEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccC-CCcCcceEEEEecC
Confidence 555 3335 999999999999999999999865443322222111 1 136788999998 5666 9999884
Q ss_pred -------hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeE
Q psy13354 244 -------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHI 315 (1342)
Q Consensus 244 -------~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~ 315 (1342)
++.+.+...... ..+++...+.++..++.....+++++..+++.++++++.+.|++. |+.+.. +.++++
T Consensus 280 ~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-p~~g~~ 356 (427)
T 3dyd_A 280 RRDIFGNEIRDGLVKLSQR--ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVR-PSGAMY 356 (427)
T ss_dssp STTSSHHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEC-CSBTTE
T ss_pred cchhhHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecC-CCeeEE
Confidence 566666543211 234445566666655554334567888899999999999999987 777643 566788
Q ss_pred EEEEccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 316 ILVDLRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 316 v~i~~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+|+.++.. ..+.+++..+++++||.+.++..+.. .+++|++++
T Consensus 357 ~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~------~~~iRis~~ 404 (427)
T 3dyd_A 357 LMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY------PNFIRVVIT 404 (427)
T ss_dssp EEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC------TTEEEEESC
T ss_pred EEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC------CCeEEEEEC
Confidence 88877622 23457788888777999998765543 346999976
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-20 Score=218.71 Aligned_cols=308 Identities=13% Similarity=0.100 Sum_probs=212.9
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
++.+.+..+.+. .++.+.+++.+.+... . ..|+...+..++++++.+++...+|.+ +.+++++||++|
T Consensus 29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~------~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a 101 (370)
T 2z61_A 29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEG-K------THYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLG 101 (370)
T ss_dssp CCCEECCCCSCSSCCCHHHHHHHHHHHHTT-C------CSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHHcC-c------cCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHH
Confidence 456777777654 3566888888877531 1 123333445688887777777766532 456666699999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--c
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--Q 179 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~ 179 (1342)
+..++.+++++||+|++..+.|++ ....+...|. +++.++ +|++++++.+++ ++++++++++++| .
T Consensus 102 ~~~~~~~~~~~gd~vl~~~p~~~~---~~~~~~~~g~--~~~~v~------~d~~~l~~~l~~-~~~~v~~~~p~nptG~ 169 (370)
T 2z61_A 102 LFFALSSIIDDGDEVLIQNPCYPC---YKNFIRFLGA--KPVFCD------FTVESLEEALSD-KTKAIIINSPSNPLGE 169 (370)
T ss_dssp HHHHHHHHCCTTCEEEEESSCCTH---HHHHHHHTTC--EEEEEC------SSHHHHHHHCCS-SEEEEEEESSCTTTCC
T ss_pred HHHHHHHhcCCCCEEEEeCCCchh---HHHHHHHcCC--EEEEeC------CCHHHHHHhccc-CceEEEEcCCCCCcCc
Confidence 999999999999999987765544 3444556676 444444 589999998865 4566666666655 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-----CCCcEEEecCCccCCCCCe---eEEEEechhHHHHhh
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-----PFADFITSTTHKSLRGPRG---GFILMKKKYKKIINS 251 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-----~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~ 251 (1342)
..+.+ |.++|++||++||+||+|+.+.+.+ ...+.. ...|++++|+||++ |+.| ||+++++++++.+..
T Consensus 170 ~~~~~-l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~ 246 (370)
T 2z61_A 170 VIDRE-IYEFAYENIPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLY-AMTGWRIGYVISNDEIIEAILK 246 (370)
T ss_dssp CCCHH-HHHHHHHHCSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTT-TCGGGCCEEEECCHHHHHHHHH
T ss_pred ccCHH-HHHHHHHcCCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhcc-CCccceEEEEEECHHHHHHHHH
Confidence 45888 9999999999999999998765432 222211 13589999999999 6555 999999998888766
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
....+.+ +++.+.+.++..++......++++.++++.++++++.+.|.+.|+++.. +.+++++|+.++. ...++..
T Consensus 247 ~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~--~~~~~~~ 322 (370)
T 2z61_A 247 LQQNLFI-SAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNN-PIGAYYVFPNIGE--DGREFAY 322 (370)
T ss_dssp HHHHHTS-SSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCC-CCBTTEECCBCSS--CHHHHHH
T ss_pred HHhhccc-CCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecC-CCcceEEEEecCC--CHHHHHH
Confidence 4333322 3344555554444432123467778889999999999999988877643 4556788888765 3456777
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.+++++||.+.++..++.. ..+++|++++
T Consensus 323 ~l~~~~gi~v~~g~~f~~~----~~~~~Ri~~~ 351 (370)
T 2z61_A 323 KLLKEKFVALTPGIGFGSK----GKNYIRISYA 351 (370)
T ss_dssp HHHHHHCEECEEGGGGCGG----GSSBEEEECC
T ss_pred HHHHhCCEEEeCchhhCCC----CCCEEEEEEe
Confidence 7775679999987544321 1457999988
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-20 Score=216.15 Aligned_cols=313 Identities=11% Similarity=0.048 Sum_probs=214.4
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~a 105 (1342)
+.+.+.+++..+++.+++++.+++.+.. .++. ...+...++.+.+++++++++|.+ +.+++++||++|+..+
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~ 77 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDEKI-GVIS-----HRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERI 77 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHTTT-TTSC-----TTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHH
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcCCc-cCcC-----CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHH
Confidence 4577888888899999999888875322 0111 122334466777888999999874 4566666999999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
+.++..| .+++....+.++ .........|. +++.++.++++.+|+++++ ++ .+++++++++++++ ...++
T Consensus 78 ~~~l~~~--~~i~~~~~~~~~-~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~--~~-~~~~~v~~~~~~nptG~~~~l 149 (362)
T 3ffr_A 78 IQNCVEK--KSFHCVNGSFSK-RFYEFAGELGR--EAYKEEAAFGKGFYPADIT--VP-ADAEIICLTHNETSSGVSMPV 149 (362)
T ss_dssp HHHHCSS--EEEEEECSHHHH-HHHHHHHHTTC--EEEEEECCTTCCCCGGGCC--CC-TTCCEEEEESEETTTTEECCH
T ss_pred HHhccCC--cEEEEcCcHHHH-HHHHHHHHhCC--CeEEEecCCCCCCCHHHHh--cc-CCccEEEEEcCCCCcceeCCH
Confidence 9999988 444433222121 11224455676 4445566667889999988 33 35566666665555 45599
Q ss_pred HHHHHHHHHc-CCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC-------
Q psy13354 184 ERFYHIAKNI-NSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------- 254 (1342)
Q Consensus 184 ~~I~~la~~~-gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------- 254 (1342)
++|+++|++| |++||+|++|+.+.... ....+|++++|+||+++|+.| |++++++++++.+.....
T Consensus 150 ~~i~~la~~~p~~~li~D~a~~~~~~~~-----~~~~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~ 224 (362)
T 3ffr_A 150 EDINTFRDKNKDALIFVDAVSSLPYPKF-----DWTKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGT 224 (362)
T ss_dssp HHHTTSGGGSTTSEEEEECTTTTTSSCC-----CTTSCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHhCCCCEEEEecccccCCccc-----ChhHCcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcc
Confidence 9999999999 99999999998764311 122279999999999966888 999999988777654321
Q ss_pred -------------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCC---CCCeEEE
Q psy13354 255 -------------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGG---TKSHIIL 317 (1342)
Q Consensus 255 -------------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~---~~~~~v~ 317 (1342)
....++++...+.++..++......+++++.+++.++++++.+.|.+. |+++..+. ....++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~ 304 (362)
T 3ffr_A 225 YHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIV 304 (362)
T ss_dssp TTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEE
T ss_pred cccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEE
Confidence 111345555666666666554443357888999999999999999997 88875421 2356788
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+++ ...++...+.++ ||.+.++..+. ..+++|++++..++
T Consensus 305 ~~~~~--~~~~~~~~l~~~-gi~~~~g~~~~------~~~~iRis~~~~~~ 346 (362)
T 3ffr_A 305 ANTTM--LPGEINKILEPF-DMAVGAGYGSK------KETQIRIANFPAHS 346 (362)
T ss_dssp EEESS--CHHHHHHHHGGG-TEEEEECSGGG------TTTEEEEECCTTSC
T ss_pred EecCC--CHHHHHHHHHHC-CeEEecCcccc------CCCEEEEECCCCCC
Confidence 88776 345566666555 99998753221 23579999988654
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-20 Score=224.44 Aligned_cols=320 Identities=11% Similarity=0.042 Sum_probs=209.0
Q ss_pred CceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.|.|+.++.. .++.+++++.+.+.. +..+.. ...|+...+..++++++++++.+.++.+ +.+++++|+++++..
T Consensus 57 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~-~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~ 134 (432)
T 3ei9_A 57 QVISLGIGDTTEPIPEVITSAMAKKAHE-LSTIEG-YSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISR 134 (432)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHHHHH-TTSTTT-CCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhc-ccccCC-ccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHH
Confidence 45778777543 456699999888753 221111 1234444556788886666665444555 566777688888876
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCC---------ceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSG---------KWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGAS 175 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g---------~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s 175 (1342)
+.++++|||+|++..+.|+++..........+ ..+..++++.+.++..|++. ..++++++++++
T Consensus 135 -l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~v~l~~p 207 (432)
T 3ei9_A 135 -LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST------VGRTDIIFFCSP 207 (432)
T ss_dssp -HHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG------CCCCSEEEEESS
T ss_pred -HHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh------CCCCCEEEEeCC
Confidence 57788999999988877766544443333222 22334433222234445432 234566666666
Q ss_pred CCC-c-c---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEe
Q psy13354 176 AYS-Q-Y---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMK 242 (1342)
Q Consensus 176 ~~~-~-~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~ 242 (1342)
+|| + . .++++|+++|++||++||+||+|+.+.++. ...+... ..+++++|+||+| |+.| ||++++
T Consensus 208 ~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~r~G~~~~~ 285 (432)
T 3ei9_A 208 NNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDD-NPRSIFEIPGAEEVAMETASFSNYA-GFTGVRLGWTVIP 285 (432)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS-CCSSGGGSTTGGGTEEEEEESHHHH-CTTTTCCEEEECC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCC-CCCChhhcCCCCCeEEEEecchhcc-CCcccceEEEEEC
Confidence 666 2 2 258888999999999999999998654432 1111111 2358899999999 6666 999999
Q ss_pred chh--------HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCe
Q psy13354 243 KKY--------KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSH 314 (1342)
Q Consensus 243 ~~l--------~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~ 314 (1342)
+++ .+.+..... ..+++++.+.+.++..++.+...+++++.++++.++++++.+.|.+.|+.+.. +..++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~ 363 (432)
T 3ei9_A 286 KKLLYSDGFPVAKDFNRIIC-TCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYG-GKNAP 363 (432)
T ss_dssp TTCBCTTSCBHHHHHHHHHH-HSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-CSSSS
T ss_pred hHHhhcchHHHHHHHHHHhc-cccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCceecC-CCcce
Confidence 887 566654321 22334445566655555433222467788899999999999999999988754 35678
Q ss_pred EEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 315 IILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 315 ~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++|+.++. ..+.+++..+++++||.+.++..++.. +.+++|+++..
T Consensus 364 ~~~~~~~~-~~~~~~~~~ll~~~gv~v~~g~~f~~~----~~~~iRis~~~ 409 (432)
T 3ei9_A 364 YVWVHFPN-QSSWDVFAEILEKTHVVTTPGSGFGPG----GEGFVRVSAFG 409 (432)
T ss_dssp EEEEECTT-SCHHHHHHHHHHHHCEECEEGGGGCGG----GTTEEEEECCS
T ss_pred EEEEECCC-CCHHHHHHHHHHHCCEEEeCchHhCCC----CCCEEEEEecC
Confidence 89999983 335678888888889999987665522 24679999743
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-20 Score=223.83 Aligned_cols=323 Identities=13% Similarity=0.085 Sum_probs=208.4
Q ss_pred ceeeeecCCCCcHH-HHHHHhHHHHhcccc---CCCCC---CccCCcchHHHHHHHHHHHHHHHhC----CC-CceEecC
Q psy13354 29 NIELIASENYTSLA-VMEAQGTLLTNKYAE---GYPGK---RYYGGCKFIDLIEKIAINRLKKIFN----AE-AANVQPH 96 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~-v~eal~~~l~~~~~~---g~~~~---~~~~~~~~~~~Le~~~~~~la~~~g----~~-~~vi~~~ 96 (1342)
.|.+..++|.++.+ +.+++.+... .... |...+ ..|+...+..++++++++++.+..+ .+ +.+++++
T Consensus 40 ~i~lg~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~ 118 (435)
T 3piu_A 40 IIQMGLAENQLCFDLLESWLAKNPE-AAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTA 118 (435)
T ss_dssp BEECSSCCCCSSHHHHHHHHHHCTT-GGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEE
T ss_pred eEEeccccccccHHHHHHHHHhCcc-ccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcC
Confidence 46777788887765 4444433221 1100 00000 1244445556888877776665544 22 4555555
Q ss_pred CHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhh-hCCceeEEEEecCC--CCCCCCHHHHHHHHHh-----cCCe
Q psy13354 97 SGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLN-MSGKWFNSICYGLN--KKEKIDYKKVEYLAKK-----NKPK 168 (1342)
Q Consensus 97 sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~-~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~-----~~~~ 168 (1342)
||++|+..++.+++++||.|++..+.|+++ ...+. ..|. ++++++.+ .++.+|++++++++++ .+++
T Consensus 119 gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~---~~~~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 193 (435)
T 3piu_A 119 GATSANETFIFCLADPGEAVLIPTPYYPGF---DRDLKWRTGV--EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVK 193 (435)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCTTH---HHHTTTTTCC--EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEE
T ss_pred ChHHHHHHHHHHhcCCCCeEEECCCccccH---HHHHHHhcCC--EEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeE
Confidence 999999999999999999999877665543 33334 4566 44555554 3567899999999876 2556
Q ss_pred EEEEcCCCCC--cc---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--------------CCCcEEEecCCc
Q psy13354 169 LIIAGASAYS--QY---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--------------PFADFITSTTHK 229 (1342)
Q Consensus 169 liv~~~s~~~--~~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--------------~~~Divv~S~sK 229 (1342)
+|+++++++| .. .++++|+++|++||++||+||+|+.+.+....+.... ....++++|+||
T Consensus 194 ~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK 273 (435)
T 3piu_A 194 GVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSK 273 (435)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSS
T ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeec
Confidence 6666666665 22 2578999999999999999999987655433222111 112388999999
Q ss_pred cCCCCCe---eEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 230 SLRGPRG---GFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE--VLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 230 ~l~gp~G---G~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~--~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
++ |+.| ||++++ +.+.+.+......+ +.+.+.+.+++..+.. ....+.++.++++.++++++.+.|.+.|
T Consensus 274 ~~-g~~G~r~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 349 (435)
T 3piu_A 274 DL-GLPGFRVGAIYSNDDMVVAAATKMSSFG---LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSG 349 (435)
T ss_dssp SS-CCGGGCEEEEEESCHHHHHHHHHHGGGS---CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cc-CCCceeEEEEEeCCHHHHHHHHHHhhcC---CCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99 6555 999995 56666665532222 2223334433333321 1123456778889999999999999989
Q ss_pred cEEeeCCCCCeEEEEEccCCC------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 304 IRIVSGGTKSHIILVDLRNKK------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 304 ~~~~~~~~~~~~v~i~~~~~~------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+++.. +.+++++|+.++... ...++...+++++||.+.++..+.... ++++|++++..
T Consensus 350 ~~~~~-~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~----~~~iRi~~~~~ 413 (435)
T 3piu_A 350 ISCLN-GNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTE----PGWFRVCFANL 413 (435)
T ss_dssp CEECC-CCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSS----TTEEEEECSSS
T ss_pred CcccC-CCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCC----CCEEEEEeeCC
Confidence 88754 455689999987632 234677777777799999876544322 46799998654
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-19 Score=221.98 Aligned_cols=314 Identities=11% Similarity=0.026 Sum_probs=211.0
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHcc-CCCC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVL-NPGD 114 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~-~pGD 114 (1342)
+|+.+++++.+.+.. .. ......|....+..++++++++++.+..|.+ +.+++++||++|+..++.+++ .+||
T Consensus 107 ~p~~~~~~a~~~l~~-~~--~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd 183 (500)
T 3tcm_A 107 FSADSISRAKQILAM-IP--GRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKD 183 (500)
T ss_dssp SCHHHHHHHHHHHTT-ST--TSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTE
T ss_pred CCHHHHHHHHHHHHc-CC--CCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCC
Confidence 455566665555532 10 1123345566667789998888888777743 455666599999999999998 8999
Q ss_pred EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC-c----ccCHH
Q psy13354 115 TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS-Q----YIDFE 184 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~-~----~~~l~ 184 (1342)
+|+++.+.|+ .+...+...|..+..++++.+.+|.+|++++++.+++. +++++++++++|| + ..+++
T Consensus 184 ~Vlv~~p~y~---~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~ 260 (500)
T 3tcm_A 184 GILVPIPQYP---LYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQY 260 (500)
T ss_dssp EEEEEESCCT---HHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHH
T ss_pred EEEEeCCCcH---hHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHH
Confidence 9998875554 44455566777555554443345789999999999863 4556665566666 2 23588
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcC-CCCCC----------CCCC-cEEEecCCccCCCCCe---eEEEE---echhH
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAG-EYPNP----------VPFA-DFITSTTHKSLRGPRG---GFILM---KKKYK 246 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~-~~~~~----------l~~~-Divv~S~sK~l~gp~G---G~iv~---~~~l~ 246 (1342)
+|+++|++||++||+|++|..+.+..+ .+.+. .+.. .++++|+||+|.|+.| ||+++ +++++
T Consensus 261 ~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 340 (500)
T 3tcm_A 261 DIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVR 340 (500)
T ss_dssp HHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHH
T ss_pred HHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHH
Confidence 889999999999999999987665432 22211 1111 3678899999844444 99998 88888
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHH---------hccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEE
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKE---------VLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHII 316 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~---------~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v 316 (1342)
+.+..... ...+++.+.+.++..++.. ....+.+.+++++.++++++.+.|.+. |+.+.. +.+++++
T Consensus 341 ~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~-~~g~~~~ 417 (500)
T 3tcm_A 341 EQIYKIAS--VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNE-AEGAMYV 417 (500)
T ss_dssp HHHHHHHH--TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC-CCBTTEE
T ss_pred HHHHHHHh--cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEec-CCeEEEE
Confidence 88766432 2334455566655544421 111255677888999999999999987 887643 5667788
Q ss_pred EEEccCCC------------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 317 LVDLRNKK------------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 317 ~i~~~~~~------------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
|+.+.-+. .+..++..+++++||.+.++..|+...+ .+++|++++
T Consensus 418 ~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g---~~~iRis~~ 474 (500)
T 3tcm_A 418 FPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPG---TWHFRCTIL 474 (500)
T ss_dssp CCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTT---CCBEEEESC
T ss_pred eeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCC---CCEEEEEEC
Confidence 86553211 1223356788888999999887765332 467999998
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.6e-19 Score=208.22 Aligned_cols=305 Identities=12% Similarity=0.080 Sum_probs=210.2
Q ss_pred ceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCCHHHHHH
Q psy13354 29 NIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~sGs~A~~ 103 (1342)
.+.+..+++. .++.+.+++.+.+.... .. ...|+.... .++++++++++.+.+|. + +.+++++||++|+.
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~-~~---~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~ 106 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIA-TE---LNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQ 106 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHG-GG---TTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcc-cc---cccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHH
Confidence 3777777764 34569999888875321 00 111222223 47888777777776553 3 56677757788999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++.+++++||+|++....|+++ ...+...|. +++.++.++++.+|++++++.+++.++++++++++++| ...
T Consensus 107 ~~~~~l~~~gd~Vl~~~~~y~~~---~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~ 181 (369)
T 3cq5_A 107 QLLQAFGGPGRTALGFQPSYSMH---PILAKGTHT--EFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVT 181 (369)
T ss_dssp HHHHHHCSTTCEEEEEESSCTHH---HHHHHHTTC--EEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCC
T ss_pred HHHHHhcCCCCEEEEcCCChHHH---HHHHHHcCC--EEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCC
Confidence 99999999999999888665543 444556676 44555666677899999999998645666666666665 445
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--C-CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCC
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--F-ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~-~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~ 255 (1342)
+.+++.++|+.++++||+||+|+.+... .......+ . .+++++|+||++ |+.| ||+++++++++.+......
T Consensus 182 ~~~~l~~l~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~~~ 259 (369)
T 3cq5_A 182 SLDDVERIINVAPGIVIVDEAYAEFSPS-PSATTLLEKYPTKLVVSRTMSKAF-DFAGGRLGYFVANPAFIDAVMLVRLP 259 (369)
T ss_dssp CHHHHHHHHHHCSSEEEEECTTGGGCCS-CCGGGGTTTCTTTEEEEEESSSTT-SCGGGCCEEEEECTHHHHHHHTTSCT
T ss_pred CHHHHHHHHHhCCCEEEEECCchhhcCC-cchHHHHhhCCCCEEEEEechHhc-CCcccceEEEEeCHHHHHHHHHcCCC
Confidence 9999999999999999999999866532 11011111 1 358899999999 5556 9999999998888765443
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
+ +++...+.++..++.. . +++++.++++.++++++.+.|.+.|+.+.. ..++++|+.++ ....++...+ .
T Consensus 260 ~---~~~~~~~~a~~~~l~~-~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~--~~~~~l~~~l-~ 329 (369)
T 3cq5_A 260 Y---HLSALSQAAAIVALRH-S-ADTLGTVEKLSVERVRVAARLEELGYAVVP--SESNFVFFGDF--SDQHAAWQAF-L 329 (369)
T ss_dssp T---CSCHHHHHHHHHHHHT-H-HHHHTHHHHHHHHHHHHHHHHHHHTCEEEC--CSSSEEEEECC--SSHHHHHHHH-H
T ss_pred C---CCCHHHHHHHHHHhcC-H-HHHHHHHHHHHHHHHHHHHHHHhCCCEECC--CCCeEEEEECC--CCHHHHHHHH-H
Confidence 3 2334445544444433 2 366778889999999999999988888753 45678888876 2234555555 5
Q ss_pred HCCceeeeccCCCCCCCcccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++||.+.++ + . .+++|++++
T Consensus 330 ~~gi~v~~~---~---~---~~~iRis~~ 349 (369)
T 3cq5_A 330 DRGVLIRDV---G---I---AGHLRTTIG 349 (369)
T ss_dssp HTTEECBCC---S---C---TTEEEEECC
T ss_pred HCCEEEEEC---C---C---CCeEEEEeC
Confidence 679999865 1 1 356999987
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=224.01 Aligned_cols=308 Identities=12% Similarity=0.069 Sum_probs=200.2
Q ss_pred CCCCcHHHHHHHhHHHHhccccCCC--CCCccCCcchHHHHHHHHHHH-HHHHhCCCCceEecCCHHHHHHHHHHHccCC
Q psy13354 36 ENYTSLAVMEAQGTLLTNKYAEGYP--GKRYYGGCKFIDLIEKIAINR-LKKIFNAEAANVQPHSGSQANQAVFFSVLNP 112 (1342)
Q Consensus 36 ~n~l~~~v~eal~~~l~~~~~~g~~--~~~~~~~~~~~~~Le~~~~~~-la~~~g~~~~vi~~~sGs~A~~~al~al~~p 112 (1342)
....++.+.+++.+.+......++. ....+.......++++ + +++++|.+ .+++++||++|+..++.+++++
T Consensus 18 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~~~ 92 (371)
T 2e7j_A 18 GGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIH----NQLPKFLGCD-VARVTNGAREAKFAVMHSLAKK 92 (371)
T ss_dssp TCCCCHHHHHHHHHC--------------------CCHHHHHH----THHHHHTTSS-EEEEESSHHHHHHHHHHHHCCT
T ss_pred CCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHH----HHHHHHcCCC-EEEEeCChHHHHHHHHHHHhCC
Confidence 5667888999988776432110111 1111223344445555 8 99999988 7777768899999999999999
Q ss_pred CCEEEEeeccCCccchhhHHhhhCCceeEEEEec--CCCCCCCCHHHHHHHHHh----cCCeEEEEcCCCCC--cccCHH
Q psy13354 113 GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG--LNKKEKIDYKKVEYLAKK----NKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 113 GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~--~~~~~~id~e~Le~~i~~----~~~~liv~~~s~~~--~~~~l~ 184 (1342)
||+|+++...|+ +....+...|. +++.++ .++++.+|++++++.+++ .+++++++++++++ ...+++
T Consensus 93 gd~vl~~~~~~~---~~~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~ 167 (371)
T 2e7j_A 93 DAWVVMDENCHY---SSYVAAERAGL--NIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVK 167 (371)
T ss_dssp TCEEEEETTCCH---HHHHHHHHTTC--EEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHH
T ss_pred CCEEEEccCcch---HHHHHHHHcCC--eEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHH
Confidence 999997775554 44444566777 445555 677788999999999974 35677777666555 445899
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHH-HhhccCCcc----
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKI-INSAVFPGI---- 257 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~-l~~~~~~~~---- 257 (1342)
+|.++|++||++||+|++|+.|... ..... ..|++++|+||+++++.+ |++++++++++. +......+.
T Consensus 168 ~i~~~~~~~~~~li~D~a~~~~~~~----~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (371)
T 2e7j_A 168 KIAKVCSEYDVPLLVNGAYAIGRMP----VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVE 243 (371)
T ss_dssp HHHHHHHTTTCCEEEECTTTBTTBC----CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGG
T ss_pred HHHHHHHHcCCeEEEECccccCCCC----CChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccCcccccc
Confidence 9999999999999999999876541 11111 268999999999966656 999999988776 655333222
Q ss_pred --ccCCcHHHHHHHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHhCCcEEeeCCC-CCeEEEEEccCCCCCHHHHHH
Q psy13354 258 --QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV--VKNAKILSKILDQRGIRIVSGGT-KSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 258 --~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l--~~~a~~l~~~L~~~g~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
.++++....+++..++. ... . .+.+++ .++++++.+.|.+.|+++..+.. .++++|+.++ ...++...
T Consensus 244 ~~~~~~~~~~~~a~~~~l~-~~~-~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 316 (371)
T 2e7j_A 244 LLGCTARGATIITLMASFP-HVR-E--RIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAE---VLYEISKK 316 (371)
T ss_dssp GTTCCCCSHHHHHHHHHHH-HHH-H--HGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECH---HHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHH-HHH-H--HHHHHHHHHHHHHHHHHHHHHcCcEEecCCCccCceEEEECC---CHHHHHHH
Confidence 23333333444333333 322 1 456777 88999999999988888764321 3678899886 23445555
Q ss_pred HHHHCCceeeeccCCCCCCCcccccccc-cccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIR-LGSSAI 366 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lR-i~~~~~ 366 (1342)
+. ++||.+.+ ..+.........+.+| ++++..
T Consensus 317 l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~ 349 (371)
T 2e7j_A 317 AK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTY 349 (371)
T ss_dssp SS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECT
T ss_pred HH-HCCEEEEe-ccccccccCCCCCceEEEEeecc
Confidence 55 66999986 3221100000135699 998875
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-20 Score=220.27 Aligned_cols=321 Identities=14% Similarity=0.113 Sum_probs=212.1
Q ss_pred CceeeeecC-CCCcHHHHHHHhHHHHhccccCCCCC-CccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASE-NYTSLAVMEAQGTLLTNKYAEGYPGK-RYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~-n~l~~~v~eal~~~l~~~~~~g~~~~-~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..+. ...++.+++++.+.+..... ..+.+ ..|.. .......+++.+++++|.+ +.+++++||++|+..
T Consensus 16 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~y~~---~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 91 (390)
T 1elu_A 16 NKTYFNFGGQGILPTVALEAITAMYGYLQE-NGPFSIAANQH---IQQLIAQLRQALAETFNVDPNTITITDNVTTGCDI 91 (390)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHHH-HCSSSHHHHHH---HHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHH
T ss_pred CeEEecCCccCCCCHHHHHHHHHHHHHHhc-cCCcchhhHHH---HHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHH
Confidence 345555444 34556699998888753221 11110 01111 1134455666999999987 456666699999999
Q ss_pred HHHHc-cCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 105 VFFSV-LNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 105 al~al-~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
++.++ +.+||+|+++...|+++...+ ......|. +++.++.+ +++.+|++++++.+++ +++++++++++++
T Consensus 92 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG 168 (390)
T 1elu_A 92 VLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGI--TYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILSHLLWNTG 168 (390)
T ss_dssp HHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCC--EEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTC
T ss_pred HHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCc--EEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEeccccCCc
Confidence 99999 899999998876665543322 22344566 44445554 5678999999988865 4566677666655
Q ss_pred cccCHHHHHHHHH----HcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc
Q psy13354 179 QYIDFERFYHIAK----NINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV 253 (1342)
Q Consensus 179 ~~~~l~~I~~la~----~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~ 253 (1342)
...++++|.++|+ +||++||+|++|+.|...... . ....|++++|+||++.|+.| |++++++++++.+....
T Consensus 169 ~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~--~-~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~ 245 (390)
T 1elu_A 169 QVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDF--S-RLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTY 245 (390)
T ss_dssp CBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCT--T-TSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCS
T ss_pred eecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCCh--h-hcCCCEEEccccccccCCCceEEEEECHHhHhhcCCcc
Confidence 4458999999999 999999999999876431110 0 11368999999997778888 99999998877665421
Q ss_pred C---------------------CccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-
Q psy13354 254 F---------------------PGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQR-GIRIVSG- 309 (1342)
Q Consensus 254 ~---------------------~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~- 309 (1342)
. .+..++++...+.++..++...... ++++..+++.++++++.+.|.+. |+++..+
T Consensus 246 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 325 (390)
T 1elu_A 246 VGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATS 325 (390)
T ss_dssp CCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS
T ss_pred ccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCc
Confidence 1 1122344444455554444433222 47888999999999999999986 8887542
Q ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 310 GTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 310 ~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+..++++++.++......++...+ .++||.+.++. ..+++|++++..++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~---------~~~~iRis~~~~~~ 374 (390)
T 1elu_A 326 APQAGLVSFTVDSPLGHRAIVQKL-EEQRIYLRTIA---------DPDCIRACCHYITD 374 (390)
T ss_dssp CCSSSEEEEEECSSSCHHHHHHHH-HHTTEECEEET---------TTTEEEEECCTTCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHH-HHCCEEEEecC---------CCCeEEEecccCCC
Confidence 234566777775333334555555 56699998764 13569999866554
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=214.06 Aligned_cols=308 Identities=19% Similarity=0.133 Sum_probs=204.3
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC-ceEecCCHHHHHHHHHHHccCC
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA-ANVQPHSGSQANQAVFFSVLNP 112 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~-~vi~~~sGs~A~~~al~al~~p 112 (1342)
......+|.+.+++.+.+...+ +.+ ...+...++++++++++++++|.+. .+++++||++|+..++.++..+
T Consensus 37 ~~~~~~~~~v~~a~~~~~~~~~--~~~-----~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~ 109 (397)
T 3f9t_A 37 SMCSNVLPITRKIVDIFLETNL--GDP-----GLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNI 109 (397)
T ss_dssp CSCCCCCTHHHHHHHHHTTCCT--TSG-----GGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHH
T ss_pred EecCCCcHHHHHHHHHHHhhcC--CCc-----ccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHH
Confidence 3445566778888887764222 111 1123456788889999999999873 4456669999999999998765
Q ss_pred -------------CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 113 -------------GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 113 -------------GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
||+|++....|+ +....+...|. +++.++.++++.+|++++++.+++.+++++++++++++
T Consensus 110 ~~~~~~~~~~~~~gd~vl~~~~~~~---~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~npt 184 (397)
T 3f9t_A 110 WREKRRKGLSKNEHPKIIVPITAHF---SFEKGREMMDL--EYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTEL 184 (397)
T ss_dssp HHHHHHTTCCCCSSCEEEEETTCCT---HHHHHHHHHTC--EEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTT
T ss_pred HHhhhhhcccCCCCeEEEECCcchh---HHHHHHHHcCc--eeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCC
Confidence 999997775554 44445555676 55666777788999999999998834444444444444
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC-------CCCCC---CCcEEEecCCccCCCCCe-eEEEEech-h
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY-------PNPVP---FADFITSTTHKSLRGPRG-GFILMKKK-Y 245 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~-------~~~l~---~~Divv~S~sK~l~gp~G-G~iv~~~~-l 245 (1342)
...++++|.++|++||++||+|++|+.+.+..... ..+++ .+|++++|+||+++++.+ |+++++++ +
T Consensus 185 G~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~~~~g~~~~~~~~~ 264 (397)
T 3f9t_A 185 GTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDIGY 264 (397)
T ss_dssp CCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCCCSSCEEEEESSGGG
T ss_pred CCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCCCCCceEEEEeCHHH
Confidence 44599999999999999999999998665432110 00111 468999999999955544 77777654 4
Q ss_pred HHHHhhccCCccc--------cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEE
Q psy13354 246 KKIINSAVFPGIQ--------GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIIL 317 (1342)
Q Consensus 246 ~~~l~~~~~~~~~--------~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~ 317 (1342)
.+.+... .++.. ++.......+..+++......++++..+++.++++++.+.|.+.|+++.. ++..++++
T Consensus 265 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~ 342 (397)
T 3f9t_A 265 KRYLDVD-APYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVI-EPILNIVA 342 (397)
T ss_dssp GGGTCEE-CTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSS-CCSSSEEE
T ss_pred HHhhccC-CccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEc-CCCccEEE
Confidence 4443221 22211 11111122233333332333467778889999999999999998887544 34567788
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+..+. ..++...+++ +||.+.++.. ++++|++++..++
T Consensus 343 ~~~~~---~~~~~~~l~~-~gi~v~~~~~---------~~~~Ri~~~~~~~ 380 (397)
T 3f9t_A 343 IEDED---YKEVCKKLRD-RGIYVSVCNC---------VKALRIVVMPHIK 380 (397)
T ss_dssp EECTT---HHHHHHHHHH-TTCBCEECSS---------SSEEEEECCTTCC
T ss_pred EEeCC---HHHHHHHHHh-CCeEEeccCC---------CCEEEEEEcCCCC
Confidence 87654 3455555555 5999987532 2469999986655
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=214.65 Aligned_cols=282 Identities=13% Similarity=0.150 Sum_probs=195.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHhC-CC-CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEE
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFN-AE-AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNS 142 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g-~~-~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~ 142 (1342)
|+...+..++++ .++++++ .+ +.+++++||++|+..++.++++|||+|++..+.|++ ....+...|..+..
T Consensus 59 y~~~~g~~~l~~----~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~---~~~~~~~~g~~~~~ 131 (375)
T 3op7_A 59 YGWIEGSPAFKK----SVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQ---LYDIPKSLGAEVDL 131 (375)
T ss_dssp SCCTTCCHHHHH----HHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTH---HHHHHHHTTCEEEE
T ss_pred CCCCCChHHHHH----HHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchh---HHHHHHHcCCEEEE
Confidence 333444556777 6777663 33 455555589999999999999999999987755544 44455667775555
Q ss_pred EEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC
Q psy13354 143 ICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV 217 (1342)
Q Consensus 143 v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l 217 (1342)
++++.+.++.+|++++++++++ ++++++++++++| ...+ +++|+++|++||++||+|++|+.+... ......
T Consensus 132 v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~--~~~~~~ 208 (375)
T 3op7_A 132 WQIEEENGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL--DVPSII 208 (375)
T ss_dssp EEEEGGGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS--CCCCHH
T ss_pred EeccccCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc--CCCchh
Confidence 5554345667899999999875 4556666566555 3336 999999999999999999998765432 111111
Q ss_pred --CCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q psy13354 218 --PFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNA 292 (1342)
Q Consensus 218 --~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a 292 (1342)
...+++++|+||++ |+.| ||+++++++++.+......+.+++ +...+.++..++ +....+.++.++++.+++
T Consensus 209 ~~~~~~i~~~s~sK~~-~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~ 285 (375)
T 3op7_A 209 EVYDKGIAVNSLSKTY-SLPGIRIGWVAANHQVTDILRDYRDYTMICA-GVFDDLVAQLAL-AHYQEILERNRHILEENL 285 (375)
T ss_dssp HHCTTEEEEEESSSSS-SCGGGCCEEEECCHHHHHHHTTTGGGTTSCC-CHHHHHHHHHHH-HTHHHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEeEChhhc-CCcccceEEEEeCHHHHHHHHHHHhhhccCC-CcHHHHHHHHHH-hccHHHHHHHHHHHHHHH
Confidence 12358899999999 5445 999999999998876544443333 333444444343 333346677788889999
Q ss_pred HHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 293 KILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 293 ~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+++.+.|.+. ++.+.. +.+++++|+.++......+++..+++++||.+.++..+.. .+++|++++..
T Consensus 286 ~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~------~~~iRi~~~~~ 353 (375)
T 3op7_A 286 AILDQWIEEEPLVSYIR-PAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFER------DGYVRLGFACE 353 (375)
T ss_dssp HHHHHHHHHCTTEEECC-CSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTC------TTEEEECCCSC
T ss_pred HHHHHHHhhCCCceEec-CCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCC------CCeEEEEecCC
Confidence 9999999885 666543 4556677877775555567788887778999998765543 24699998764
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-19 Score=216.25 Aligned_cols=323 Identities=11% Similarity=0.077 Sum_probs=214.1
Q ss_pred ceeeeec-CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 29 NIELIAS-ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 29 ~i~l~a~-~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
.+.+..+ ....++.+++++.+.+...+ +++.+ .|..+........++++++++++|.+ +.+++++||++++..++
T Consensus 27 ~~~ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~ 103 (406)
T 3cai_A 27 WVHFDAPAGMLIPDSVATTVSTAFRRSG--ASTVG-AHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLA 103 (406)
T ss_dssp CEECBGGGCCCCCHHHHHHHHHHHHHCC--SSSCS-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHH
T ss_pred eEEEeCCCcCCCCHHHHHHHHHHHHhcC--CCCCC-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHH
Confidence 3444444 34677789999988885322 22221 22222223455566777999999987 56777779999999999
Q ss_pred HHc---cCCCCEEEEeeccCCccchhhHHh-hhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--c
Q psy13354 107 FSV---LNPGDTIMGMSLQEGGHLTHGMML-NMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS--Q 179 (1342)
Q Consensus 107 ~al---~~pGD~Vlv~~~~~~~~~s~~~~~-~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~ 179 (1342)
.++ +++||+|+++...+++....+..+ ...|. +++.++.+ +++.+|++++++.+++ ++++|++++++++ .
T Consensus 104 ~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~ 180 (406)
T 3cai_A 104 EASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGA--KVKWAEVDIETGELPTWQWESLISK-STRLVAVNSASGTLGG 180 (406)
T ss_dssp HHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBC--EEEEECCCTTTCCCCGGGHHHHCCT-TEEEEEEESBCTTTCB
T ss_pred HHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCC--eEEEEecCcccCCcCHHHHHHHhCC-CceEEEEeCCcCCccc
Confidence 887 789999998887776654433322 22455 55556666 6788999999998865 4566666665555 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCee-EEEEechhHHHHhhccCC-
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRGG-FILMKKKYKKIINSAVFP- 255 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~GG-~iv~~~~l~~~l~~~~~~- 255 (1342)
..++++|.++|+++|++||+|++|+.|.... .+. ..|++++|+||++ ||.+| ++++++++++.+......
T Consensus 181 ~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~-----~~~~~~~d~~~~s~~K~~-g~~~G~~~~~~~~~~~~l~~~~~~~ 254 (406)
T 3cai_A 181 VTDLRAMTKLVHDVGALVVVDHSAAAPYRLL-----DIRETDADVVTVNAHAWG-GPPIGAMVFRDPSVMNSFGSVSTNP 254 (406)
T ss_dssp BCCCHHHHHHHHHTTCEEEEECTTTTTTCCC-----CHHHHCCSEEEEEGGGGT-SCSCEEEEESCHHHHHTSCCCCSCT
T ss_pred cCCHHHHHHHHHHcCCEEEEEcccccCCCCC-----CchhcCCCEEEeehhhhc-CCCcCeEEEEehHHHhhcCCcccCC
Confidence 5589999999999999999999998654311 111 2689999999998 56567 999999887776543211
Q ss_pred -------ccccCCcHHHHHHHHHHHHHhccc--------------hHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCC-CC
Q psy13354 256 -------GIQGGPLMHVIAAKAVAFKEVLKP--------------DFKIYQKQVVKNAKILSKILDQR-GIRIVSGG-TK 312 (1342)
Q Consensus 256 -------~~~~~~~~~~~~Aaa~al~~~l~~--------------~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~-~~ 312 (1342)
+..++++.+...++..++...... ++++..+++.++++++.+.|.+. |+++..+. ..
T Consensus 255 ~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 334 (406)
T 3cai_A 255 YATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQ 334 (406)
T ss_dssp TCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSB
T ss_pred CCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCcccc
Confidence 113444455554544444333221 36778889999999999999986 77765421 12
Q ss_pred CeEEEEEccCCCCCHHHHHHHHHHCCceeeeccC------CCCCCCcccccccccccccccc
Q psy13354 313 SHIILVDLRNKKITGKIAESILESANIICNKNSI------PNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 313 ~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~------p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+++++.+++ ....++...+ .++||.+.++.. ++.+. ..+.+|++++..++
T Consensus 335 ~~~~~~~~~~-~~~~~~~~~L-~~~gi~v~~g~~~~~~~~~g~~~---~~~~iRis~~~~~t 391 (406)
T 3cai_A 335 IPVVSFAVHK-VPADRVVQRL-ADNGILAIANTGSRVLDVLGVND---VGGAVTVGLAHYST 391 (406)
T ss_dssp CSEEEEEETT-BCHHHHHHHH-HHTTEECEECCSCHHHHHHTTTT---TTCCEEEECCTTCC
T ss_pred CCEEEEEECC-cCHHHHHHHH-HHCCcEEecCChHHHHHHcCCCC---CCCeEEEEeecCCC
Confidence 4467777763 2233455544 557999987651 11111 13579999987655
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-19 Score=215.03 Aligned_cols=323 Identities=15% Similarity=0.093 Sum_probs=210.7
Q ss_pred CceeeeecCC-C---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCCHHH
Q psy13354 28 NNIELIASEN-Y---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHSGSQ 100 (1342)
Q Consensus 28 ~~i~l~a~~n-~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~sGs~ 100 (1342)
+.|.+..+.. . .++.+.+++.+.+.... .... |+...+..++++++++++.+.+|. + +.+++++||++
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~----~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~ 109 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVLEKEP----KSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTG 109 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHHHHCG----GGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHH
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHHhhcc----cccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHH
Confidence 5677765542 2 33458888888775321 0111 333345568888777777776683 3 55666658899
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHH----h-cCCeEE-EEcC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAK----K-NKPKLI-IAGA 174 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~----~-~~~~li-v~~~ 174 (1342)
|+..++.+++.+||+|++....+ ......+...|..+..+ +.++++ +|++++++.++ + .+++++ ++++
T Consensus 110 a~~~~~~~~~~~gd~vl~~~p~~---~~~~~~~~~~g~~~~~v--~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~ 183 (407)
T 2zc0_A 110 ALDLLGRVLIDPGDVVITENPSY---INTLLAFEQLGAKIEGV--PVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPT 183 (407)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCC---HHHHHHHHTTTCEEEEE--EEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCh---HHHHHHHHHcCCEEEEc--ccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCC
Confidence 99999999999999999777544 44445556667754444 444444 89999999987 4 245665 4555
Q ss_pred CCCC--cccCH---HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC--CCcEEEecCCccCCCC--CeeEEEEec
Q psy13354 175 SAYS--QYIDF---ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP--FADFITSTTHKSLRGP--RGGFILMKK 243 (1342)
Q Consensus 175 s~~~--~~~~l---~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~--~~Divv~S~sK~l~gp--~GG~iv~~~ 243 (1342)
+++| ...+. ++|+++|++||++||+|++|+.+.+........ ++ ..+++++|+||++ ++ .+||+++++
T Consensus 184 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~G~r~G~~~~~~ 262 (407)
T 2zc0_A 184 GQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVL-GTGFRIGWIIAEG 262 (407)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTT-CTTSCCEEEECCH
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEccccccc-CCCcceEEEecCH
Confidence 5554 33354 599999999999999999998765432211111 11 1357899999999 43 249999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHh-cc-chHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-LK-PDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVD 319 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-l~-~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~ 319 (1342)
++++.+......+.+++ +...+.++..++... .. .+++..++++.++++++.+.|.+. ++.+.. +..++++|+.
T Consensus 263 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~ 340 (407)
T 2zc0_A 263 EILKKVLMQKQPIDFCA-PAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTK-PIAGMFVMFF 340 (407)
T ss_dssp HHHHHHHHHHTTTTSSS-CHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCC-CSBSSEEEEE
T ss_pred HHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEec-CCCcEEEEEE
Confidence 98888876544444433 344444444333321 12 355667788889999999999874 565533 4567789999
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++......++...+++++||.+.++..+..... ..+++|++++..
T Consensus 341 ~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~--~~~~iRis~~~~ 385 (407)
T 2zc0_A 341 LPEGADGISFANELMEREGVVVVPGKPFYTDES--GKNAIRLNFSRP 385 (407)
T ss_dssp CSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSC--CTTEEEEECSSS
T ss_pred cCCCCCHHHHHHHHHHhCCeEEECchhccCCCC--CCCeEEEEeCCC
Confidence 875433456677776666999988654432210 135799998765
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-20 Score=221.68 Aligned_cols=321 Identities=12% Similarity=0.060 Sum_probs=213.7
Q ss_pred cCceeeeecC-CC---CcHHHHHHHhHHHHhcc--ccCCCCCCccCCcchHHHHHHHHHHHHHHHhC---CC-CceEecC
Q psy13354 27 NNNIELIASE-NY---TSLAVMEAQGTLLTNKY--AEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN---AE-AANVQPH 96 (1342)
Q Consensus 27 ~~~i~l~a~~-n~---l~~~v~eal~~~l~~~~--~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g---~~-~~vi~~~ 96 (1342)
.+.|.+..+. ++ .++.+.+++.+.+.... ..+ |+...+..++++++++++.+.+| .+ +.+++++
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~------y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~ 116 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQ------YSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTV 116 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTS------CCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEE
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcC------CCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEec
Confidence 3557776654 22 33458888888775311 112 22233456888877777776668 43 4566665
Q ss_pred CHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh-------cCCeE
Q psy13354 97 SGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK-------NKPKL 169 (1342)
Q Consensus 97 sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~-------~~~~l 169 (1342)
||++|+..++.+++++||+|++..+.++ .....+...|..+..+ +.++++ +|++++++.+++ .++++
T Consensus 117 G~~~al~~~~~~l~~~gd~Vl~~~p~y~---~~~~~~~~~g~~~~~v--~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~ 190 (425)
T 1vp4_A 117 GSQQALDLIGKLFLDDESYCVLDDPAYL---GAINAFRQYLANFVVV--PLEDDG-MDLNVLERKLSEFDKNGKIKQVKF 190 (425)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCH---HHHHHHHTTTCEEEEE--EEETTE-ECHHHHHHHHHHHHHTTCGGGEEE
T ss_pred cHHHHHHHHHHHhCCCCCEEEEeCCCcH---HHHHHHHHcCCEEEEe--ccCCCC-CCHHHHHHHHHhhhhcccCCCceE
Confidence 8888999999999999999998775544 4444556667744444 444444 899999998876 24566
Q ss_pred E-EEcCCCCC-c-cc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC----CCCcEEEecCCccCCCCCe---
Q psy13354 170 I-IAGASAYS-Q-YI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV----PFADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 170 i-v~~~s~~~-~-~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l----~~~Divv~S~sK~l~gp~G--- 236 (1342)
| +++++++| + .. ++++|+++|++||++||+||+|+.+.+.+....... ...+++++|+||++ | .|
T Consensus 191 v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~-~G~r~ 268 (425)
T 1vp4_A 191 IYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVL-A-PGLRI 268 (425)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTT-C-GGGCE
T ss_pred EEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEecccccc-c-cccce
Confidence 6 45565555 2 22 478999999999999999999986554222111111 12468899999999 5 55
Q ss_pred eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhC-----CcEEeeCC
Q psy13354 237 GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-LKPDFKIYQKQVVKNAKILSKILDQR-----GIRIVSGG 310 (1342)
Q Consensus 237 G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-l~~~~~~~~~~l~~~a~~l~~~L~~~-----g~~~~~~~ 310 (1342)
||+++++++++.+......+.++ ++...+.++..++... ..++++..++++.++++++.+.|.+. |+.+.. +
T Consensus 269 G~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~-~ 346 (425)
T 1vp4_A 269 GMVAGSKEFIRKIVQAKQSADLC-SPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVK-S 346 (425)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECC-C
T ss_pred EEEeeCHHHHHHHHHHhhhhcCC-CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEec-C
Confidence 99999998888876543333333 3345555555454432 12356677888899999999999875 677643 4
Q ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 311 TKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 311 ~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
..++++|+.++......+++..++++ ||.+.++..+.... ...+++|++++..
T Consensus 347 ~~g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~--~~~~~iRis~~~~ 399 (425)
T 1vp4_A 347 EGGLFIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYD--EPSPSMRLSFCLP 399 (425)
T ss_dssp SBSSEEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTC--CCCSEEEEECSSS
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCC--CCCCeEEEEeCCC
Confidence 56789999987533445677777777 99999875443211 0135799998764
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-19 Score=217.82 Aligned_cols=324 Identities=15% Similarity=0.106 Sum_probs=207.9
Q ss_pred CceeeeecCCCCcHH-HHHHHhHHHHhccc----cCCCCCCccCCcchHHHHHHHHHHHHHHHhC----CC-CceEecCC
Q psy13354 28 NNIELIASENYTSLA-VMEAQGTLLTNKYA----EGYPGKRYYGGCKFIDLIEKIAINRLKKIFN----AE-AANVQPHS 97 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~-v~eal~~~l~~~~~----~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g----~~-~~vi~~~s 97 (1342)
..+.+.+++|.++++ +.+++.+....... ........|....+..++++++++++.+.+| .+ +.+++++|
T Consensus 37 ~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G 116 (428)
T 1iay_A 37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGG 116 (428)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEH
T ss_pred ceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccC
Confidence 457788888887766 56665532100000 0000001122223356888877777776655 32 45556647
Q ss_pred HHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHh-----cCCeEE
Q psy13354 98 GSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKK-----NKPKLI 170 (1342)
Q Consensus 98 Gs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~-----~~~~li 170 (1342)
|++++..++.++++|||+|+++.+.|+++... .....|. ++++++.+ +++.+|++++++.+++ .+++++
T Consensus 117 ~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~--~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 192 (428)
T 1iay_A 117 ATGANETIIFCLADPGDAFLVPSPYYPAFNRD--LRWRTGV--QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGL 192 (428)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESSCCTTHHHH--TTTTTCC--EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHhCCCCCeEEEccCCCcchHHH--HHHhcCC--EEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEE
Confidence 78899999999999999999887666543211 2234566 45555554 4567899999998875 245666
Q ss_pred EEcCCCCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---CC-------Cc--EEEecCCccCCC
Q psy13354 171 IAGASAYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---PF-------AD--FITSTTHKSLRG 233 (1342)
Q Consensus 171 v~~~s~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---~~-------~D--ivv~S~sK~l~g 233 (1342)
+++++++| ...+ +++|+++|++||++||+||+|+.+.+....+.+.. .. .| +++.|+||++ |
T Consensus 193 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~-g 271 (428)
T 1iay_A 193 ILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-G 271 (428)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-S
T ss_pred EEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhc-C
Confidence 66666665 3335 99999999999999999999986544322221111 11 46 8899999999 6
Q ss_pred CCe---eEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 234 PRG---GFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV--LKPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 234 p~G---G~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~--l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
+.| ||+++ ++++++.+......+ +.+.+.+.++..++... ...++++.++++.++++++.+.|.+.|+++.
T Consensus 272 ~~Glr~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 348 (428)
T 1iay_A 272 LPGFRVGIIYSFNDDVVNCARKMSSFG---LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCL 348 (428)
T ss_dssp CGGGCEEEEEESCHHHHHHHHHHHTTS---CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred CCCceEEEEEeCCHHHHHHHHHHHhcc---cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 555 99998 567877776543322 23344555444443221 1225667888899999999999998887754
Q ss_pred eCCCCCeEEEEEccCCC------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNKK------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~~------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
. +..++++|++++... ...++...+++++||.+.++..+.... .+++|++++
T Consensus 349 ~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~----~~~iRis~~ 406 (428)
T 1iay_A 349 K-NNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQE----PGWFRVCFA 406 (428)
T ss_dssp C-CSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSS----SSEEEEECS
T ss_pred C-CCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCC----CCEEEEEEe
Confidence 3 346789999987532 123566666666699999875443321 357999997
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=216.29 Aligned_cols=308 Identities=12% Similarity=0.031 Sum_probs=210.4
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCCHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~sGs~A~ 102 (1342)
+.|.+..+.+.+ ++.+.+++.+.+.. ..+ |+...+..++++++++++.+.+|. + +.+++++||++|+
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~------y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al 95 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTHS--LNI------YPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVL 95 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGGG--GGS------CCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHH
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhhh--cCC------CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHH
Confidence 567787777554 45588887766521 112 223334468888888888888886 3 5666676999999
Q ss_pred HHHHHHccCC--CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 103 QAVFFSVLNP--GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 103 ~~al~al~~p--GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
..++.+++++ ||+|++..+.|+ .....+...|. +++.++.++++.+++ ++++.+.+ ++++++++++++| +
T Consensus 96 ~~~~~~~~~~~~gd~vl~~~p~~~---~~~~~~~~~g~--~~~~~~~~~~~~~~~-~l~~~~~~-~~~~v~~~~p~nptG 168 (376)
T 3ezs_A 96 FNFPSFVLFDYQNPTIAYPNPFYQ---IYEGAAKFIKA--KSLLMPLTKENDFTP-SLNEKELQ-EVDLVILNSPNNPTG 168 (376)
T ss_dssp HHHHHHHTTTCSSCEEEEEESCCT---HHHHHHHHTTC--EEEEEECCGGGTSCC-CCCHHHHH-HCSEEEECSSCTTTC
T ss_pred HHHHHHHcCCCCCCEEEEecCCcH---hHHHHHHHcCC--EEEEcccCCCCCcch-hHHhhhcc-CCCEEEEcCCCCCcC
Confidence 9999999999 999998775554 44445566677 445555554433444 66666665 3556666566665 2
Q ss_pred -cc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC----------CCCCcEEEecCCccCCCCCe---eEEEEe
Q psy13354 180 -YI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP----------VPFADFITSTTHKSLRGPRG---GFILMK 242 (1342)
Q Consensus 180 -~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~----------l~~~Divv~S~sK~l~gp~G---G~iv~~ 242 (1342)
.. ++++|+++|++||++||+||+|+.+.+.. ...+. ....+++++|+||++ |+.| ||++++
T Consensus 169 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~ 246 (376)
T 3ezs_A 169 RTLSLEELISWVKLALKHDFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLSKRS-SAPGLRSGFIAGD 246 (376)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEESTTTT-TCGGGCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecchhcc-CCccceeEEEeeC
Confidence 22 48888999999999999999998654432 22221 123468899999999 6556 999999
Q ss_pred chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC
Q psy13354 243 KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 243 ~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~ 322 (1342)
+++++.+........+ +++.+.+.++..++. . .+++++.++++.++++++.+.|. ++. .+..++++|+.++
T Consensus 247 ~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~-~-~~~~~~~~~~~~~~~~~l~~~l~--~~~---~~~~~~~~~~~~~- 317 (376)
T 3ezs_A 247 SRLLEKYKAFRAYLGY-TSANAIQKASEAAWL-D-DRHAEFFRNIYANNLKLARKIFK--NTL---IYPYSFYVYLPVQ- 317 (376)
T ss_dssp HHHHHHHHHHHTTTCC-CCCHHHHHHHHHHHH-C-SHHHHHHHHHHHHHHHHHHHHST--TCC---CCSBSSEEEEECS-
T ss_pred HHHHHHHHHHHhhhcC-CCChHHHHHHHHHHh-C-cHHHHHHHHHHHHHHHHHHHHhc--CCC---CCCcceEEEEECC-
Confidence 9998888765443333 334555555554443 3 34677888999999999999987 654 3466789999987
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
...++...+++++||.+.++..++... ...+++|++++.
T Consensus 318 --~~~~~~~~l~~~~gi~v~~g~~~~~~~--~~~~~iRis~~~ 356 (376)
T 3ezs_A 318 --NGENFAKTLYQNEGIITLPALYLGRNR--IGADYVRLALVY 356 (376)
T ss_dssp --CHHHHHHHHHHHHCCBCEEGGGGCSTT--TTTTEEEEECCS
T ss_pred --CHHHHHHHHHHhCCEEEeCcHHhCCCC--CCCCeEEEEEcC
Confidence 345677777775799999876655311 124679999874
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-20 Score=221.80 Aligned_cols=316 Identities=13% Similarity=0.105 Sum_probs=211.2
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
++.+.+..+.+. .++.+.+++ +.+.. .. ..|+...+..++++++++++...+|.+ +.+++++||++|
T Consensus 43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~~-~~------~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a 114 (409)
T 2gb3_A 43 VRIHHLNIGQPDLKTPEVFFERI-YENKP-EV------VYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEA 114 (409)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHTCC-SS------CCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHH
T ss_pred CCEEeccCCCCCCCCCHHHHHHH-HHHhc-CC------CCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHH
Confidence 455777776654 345688888 76632 11 123333445688887777777766532 455666589999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--KEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++++||+|++....|+++ ...+...|. +++.++.++ ++.+ ++++++.+++ ++++++++++++|
T Consensus 115 ~~~~~~~~~~~gd~Vl~~~~~~~~~---~~~~~~~g~--~~~~v~~~~~~~~~~-~~~l~~~l~~-~~~~v~~~~p~npt 187 (409)
T 2gb3_A 115 ILFSFAVIANPGDEILVLEPFYANY---NAFAKIAGV--KLIPVTRRMEEGFAI-PQNLESFINE-RTKGIVLSNPCNPT 187 (409)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTHH---HHHHHHHTC--EEEEEECCGGGTSCC-CTTGGGGCCT-TEEEEEEESSCTTT
T ss_pred HHHHHHHhCCCCCEEEEcCCCchhH---HHHHHHcCC--EEEEeccCCCCCCcc-HHHHHHhhCc-CCeEEEECCCCCCC
Confidence 9999999999999999888665543 344555676 444455553 4444 7888887765 4566666565555
Q ss_pred cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---CCCcEEEecCCccCCCCCe---eEEEEec-hhHH
Q psy13354 179 QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---PFADFITSTTHKSLRGPRG---GFILMKK-KYKK 247 (1342)
Q Consensus 179 ~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---~~~Divv~S~sK~l~gp~G---G~iv~~~-~l~~ 247 (1342)
+. .++++|+++|++||++||+|++|+.+.+.. .+.+.+ ...|++++|+||++ |+.| ||+++++ ++++
T Consensus 188 G~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~l~~ 265 (409)
T 2gb3_A 188 GVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASALSIESDKVVVIDSVSKKF-SACGARVGCLITRNEELIS 265 (409)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCCTTEEEEEESTTTT-TCGGGCCEEEECSCHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCccccCCCCEEEEecchhcc-CCccceEEEEEECcHHHHH
Confidence 22 368999999999999999999998765432 222222 23589999999999 6555 9999999 8888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCH
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
.+......+. +++.+.+.++..++ +....++++..+++.++++++.+.|.+.|+.+...+..++++|+.++ .....
T Consensus 266 ~l~~~~~~~~--~~~~~~~~a~~~~l-~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~~ 341 (409)
T 2gb3_A 266 HAMKLAQGRL--APPLLEQIGSVGLL-NLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELP-VEDAE 341 (409)
T ss_dssp HHHHHHHHSC--CCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECS-SSCHH
T ss_pred HHHHHHhccC--CCCHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCCeeEEEEEEeC-CCCHH
Confidence 8766433333 34445555544444 22234677788899999999999999888776223456778888886 22344
Q ss_pred HHHHHHHHH-----CCceeeeccCCCCCCCcccccccccccc
Q psy13354 328 KIAESILES-----ANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 328 ~~~~~ll~~-----~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++...++++ +||.+.++..+.... ....+++|++++
T Consensus 342 ~l~~~l~~~~~~~~~gi~v~~g~~f~~~~-~~~~~~iRis~~ 382 (409)
T 2gb3_A 342 EFARWMLTDFNMDGETTMVAPLRGFYLTP-GLGKKEIRIACV 382 (409)
T ss_dssp HHHHHHHHSCCBTTEEEECEEGGGGCSST-TTTSSEEEEECC
T ss_pred HHHHHHHhccccccCcEEEeCchHhCCCC-CCCCCEEEEEeC
Confidence 566666665 599999865443210 011457999987
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=218.06 Aligned_cols=288 Identities=12% Similarity=0.055 Sum_probs=199.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCC----------CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCC
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAE----------AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSG 137 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~----------~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g 137 (1342)
..+..++++++++++++.+|.+ +.+++++|+++|+..++.++++|||+|++..+.| ......+...|
T Consensus 77 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y---~~~~~~~~~~g 153 (425)
T 2r2n_A 77 SAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAY---SGTLQSLHPLG 153 (425)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCC---HHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCc---HHHHHHHHHcC
Confidence 3444588888888998888865 2567776889999999999999999999776544 44445556667
Q ss_pred ceeEEEEecCCCCCCCCHHHHHHHHHh-----------cCCeEEEE-cCCCCC--ccc---CHHHHHHHHHHcCCEEEEE
Q psy13354 138 KWFNSICYGLNKKEKIDYKKVEYLAKK-----------NKPKLIIA-GASAYS--QYI---DFERFYHIAKNINSYFMVD 200 (1342)
Q Consensus 138 ~~~~~v~~~~~~~~~id~e~Le~~i~~-----------~~~~liv~-~~s~~~--~~~---~l~~I~~la~~~gi~LIvD 200 (1342)
. +++.++.++++ +|++++++.++. .+++++++ +.++|| ... .+++|+++|++||++||+|
T Consensus 154 ~--~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~D 230 (425)
T 2r2n_A 154 C--NIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIED 230 (425)
T ss_dssp C--EEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred C--EEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 6 44445554444 899999999873 24567655 344555 223 4669999999999999999
Q ss_pred cccchhhhhcCCCCCCC--C--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHH
Q psy13354 201 MAHYAGLIAAGEYPNPV--P--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAF 273 (1342)
Q Consensus 201 ea~~~g~~~~~~~~~~l--~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al 273 (1342)
|+|+...+.+....+.. + ..+++++|+||++ + .| ||+++++++++.+........+ +++.+.+.++..++
T Consensus 231 e~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~-~-~GlRiG~~~~~~~l~~~l~~~~~~~~~-~~~~~~q~a~~~~l 307 (425)
T 2r2n_A 231 DPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKII-S-SGLRIGFLTGPKPLIERVILHIQVSTL-HPSTFNQLMISQLL 307 (425)
T ss_dssp CTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTT-C-STTCCEEEEEEHHHHHHHHHHHHTTTC-SSCHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCCccccCCCCCEEEEccchhhc-c-CccceEEEecCHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 99986544332222221 1 1358899999999 5 56 9999999988888764333333 34455666655555
Q ss_pred HHh----ccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCC
Q psy13354 274 KEV----LKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIP 347 (1342)
Q Consensus 274 ~~~----l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p 347 (1342)
... ...++++.++++.++++++.+.|.+. |+.....+.+++++|+.++....+.+++...+.++||.+.++..+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f 387 (425)
T 2r2n_A 308 HEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAF 387 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTEECEEGGGG
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCcEEechhhh
Confidence 432 12356777888999999999999884 663323456788999999865555565555666779999987655
Q ss_pred CCCCCccccccccccccc
Q psy13354 348 NDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 348 ~~~~~~~~~~~lRi~~~~ 365 (1342)
+.... ...+++|++++.
T Consensus 388 ~~~~~-~~~~~iRis~~~ 404 (425)
T 2r2n_A 388 YVDSS-APSPYLRASFSS 404 (425)
T ss_dssp SSSTT-SCCCEEEEECSS
T ss_pred cCCCC-CCCCEEEEEeCC
Confidence 43310 013579999874
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-19 Score=210.84 Aligned_cols=309 Identities=15% Similarity=0.111 Sum_probs=206.2
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-----CceEecCCHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-----AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-----~~vi~~~sGs~A~ 102 (1342)
+.+.+.+++..+++.+++++.+.... ++ .+........++++++++++.. +.+++++||++|+
T Consensus 5 ~~~~~~p~p~~~~~~v~~a~~~~~~~----------~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al 72 (385)
T 2bkw_A 5 VDTLLIPGPIILSGAVQKALDVPSLG----------HT--SPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGW 72 (385)
T ss_dssp CCEECSSSSCCCCHHHHHTTSCCCCC----------TT--SHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHH
T ss_pred cceeecCCCcCchHHHHHHHhccccc----------cC--CHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHH
Confidence 34667888888888888886544321 11 1111223344566777777753 4566666999999
Q ss_pred HHHHHHcc---CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC-CCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 103 QAVFFSVL---NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL-NKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 103 ~~al~al~---~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~-~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
..++.++. ++||+|+++...+.+. +....+...|. +++.++. ++++.+|++++++++++.++++|++++++++
T Consensus 73 ~~~~~~~~~~~~~gd~vlv~~~~~~~~-~~~~~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~np 149 (385)
T 2bkw_A 73 DIFASNFILSKAPNKNVLVVSTGTFSD-RFADCLRSYGA--QVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTS 149 (385)
T ss_dssp HHHHHHHSCTTCSCCEEEEECSSHHHH-HHHHHHHHTTC--EEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETT
T ss_pred HHHHHHHhccCCCCCeEEEEcCCcchH-HHHHHHHHcCC--ceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCC
Confidence 99999997 8999998764322111 11234456676 4555566 6778899999999998745666666665555
Q ss_pred --cccCHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHH-HHhh
Q psy13354 179 --QYIDFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKK-IINS 251 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~-~l~~ 251 (1342)
...++++|+++|++| |++||+|++|+.|... ..... .+|++++|+||+++|+.| |++++++++++ .+..
T Consensus 150 tG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~----~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~ 225 (385)
T 2bkw_A 150 TAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEE----FEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALND 225 (385)
T ss_dssp TTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSC----CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCH
T ss_pred cCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcc----ccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhh
Confidence 445899999999999 9999999999865431 11111 368999999999977888 99999987766 4421
Q ss_pred ----------------------ccC--CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH-HhCCcEE
Q psy13354 252 ----------------------AVF--PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL-DQRGIRI 306 (1342)
Q Consensus 252 ----------------------~~~--~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L-~~~g~~~ 306 (1342)
... ....++++...+.++..++......++++..+++.++++++.+.| ++.|+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 305 (385)
T 2bkw_A 226 SKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTS 305 (385)
T ss_dssp HHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred ccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcCcee
Confidence 000 111234445555555555544333346778899999999999999 8888887
Q ss_pred eeCC----CCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccc-cc
Q psy13354 307 VSGG----TKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLG-SS 364 (1342)
Q Consensus 307 ~~~~----~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~-~~ 364 (1342)
..+. ...+++|+.+++ ..++...+. ++||.+.++..+.. ..+.+|++ ++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~-~~gi~v~~g~~~~~-----~~~~iRis~~~ 359 (385)
T 2bkw_A 306 VSRYPSNMSAHGLTAVYVAD---PPDVIAFLK-SHGVVIAGGIHKDI-----GPKYIRIGHMG 359 (385)
T ss_dssp SSCSSSTTBCSSCEEEECSC---HHHHHHHHH-HTTEECBCCCCTTT-----GGGEEEECCCG
T ss_pred cccCcccccCCceEEEecCC---HHHHHHHHH-HCCeEEeCCCCccc-----CCCEEEEEccc
Confidence 5421 246788888764 345555554 56999987543221 24679999 55
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=218.36 Aligned_cols=316 Identities=12% Similarity=0.061 Sum_probs=206.0
Q ss_pred cCceeeeecC-CC---CcHHHHHHHhHHHHhcc--ccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHH
Q psy13354 27 NNNIELIASE-NY---TSLAVMEAQGTLLTNKY--AEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGS 99 (1342)
Q Consensus 27 ~~~i~l~a~~-n~---l~~~v~eal~~~l~~~~--~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs 99 (1342)
.+.+.+..+. ++ .++.+.+++.+.+.... ..+|+ ...+..++++ .+++++|.+ +.+++++||+
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~------~~~~~~~l~~----~la~~~g~~~~~v~~~~g~~ 101 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYS------PTEGYAPLRA----FVAEWIGVRPEEVLITTGSQ 101 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCC------CTTCCHHHHH----HHHHHHTSCGGGEEEESHHH
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCC------CCCCCHHHHH----HHHHHhCCChhhEEEeccHH
Confidence 4557776553 22 23458888887764311 11222 2233446666 677777765 5666675888
Q ss_pred HHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEE-EEcCCCCC
Q psy13354 100 QANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLI-IAGASAYS 178 (1342)
Q Consensus 100 ~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~li-v~~~s~~~ 178 (1342)
+|+..++.+++++||+|++..+.++ .....+...|..+..+ +.++++ +|++++++.+++.+++++ +++++++|
T Consensus 102 ~al~~~~~~~~~~gd~Vl~~~p~y~---~~~~~~~~~g~~~~~~--~~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~~np 175 (397)
T 2zyj_A 102 QALDLVGKVFLDEGSPVLLEAPSYM---GAIQAFRLQGPRFLTV--PAGEEG-PDLDALEEVLKRERPRFLYLIPSFQNP 175 (397)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCH---HHHHHHHTTCCEEEEE--EEETTE-ECHHHHHHHHHHCCCSCEEECCBSCTT
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcH---HHHHHHHHcCCEEEec--CcCCCC-CCHHHHHHHHhhcCCeEEEECCCCcCC
Confidence 8999999999999999998775544 3444455667644444 444444 899999999987455665 45555555
Q ss_pred --ccc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-------CCcEEEecCCccCCCCCe---eEEEEec
Q psy13354 179 --QYI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-------FADFITSTTHKSLRGPRG---GFILMKK 243 (1342)
Q Consensus 179 --~~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-------~~Divv~S~sK~l~gp~G---G~iv~~~ 243 (1342)
... ++++|+++|++||++||+||+|+.+.+.+....+... ...++++|+||++ | .| ||+++++
T Consensus 176 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~-~G~r~G~~~~~~ 253 (397)
T 2zyj_A 176 TGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVL-S-PGLRVAFAVAHP 253 (397)
T ss_dssp TCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTT-C-GGGCCEEEECCH
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccc-c-ccceeEEEecCH
Confidence 222 4669999999999999999999875542221111111 1138899999999 5 45 9999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhC---CcEEeeCCCCCeEEEEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKILDQR---GIRIVSGGTKSHIILVD 319 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~-~~~~~~~~~l~~~a~~l~~~L~~~---g~~~~~~~~~~~~v~i~ 319 (1342)
++++.+......+.+++ +...+.++..++. ... +++++..+++.++++++.+.|.+. |+.+.. +..++++|+.
T Consensus 254 ~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~-~~~g~~~~~~ 330 (397)
T 2zyj_A 254 EALQKLVQAKQGADLHT-PMLNQMLVHELLK-EGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTR-PKGGMFVWME 330 (397)
T ss_dssp HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECC-CSBSSEEEEE
T ss_pred HHHHHHHHHHHhhcCCC-CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEcc-CCccEEEEEE
Confidence 88888765433333333 3444444443333 221 356777888899999999999875 687643 4567899999
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++......++...++++ ||.+.++..+.... ...+++|++++..
T Consensus 331 ~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~--~~~~~iRis~~~~ 374 (397)
T 2zyj_A 331 LPKGLSAEGLFRRALEE-NVAFVPGGPFFANG--GGENTLRLSYATL 374 (397)
T ss_dssp CSTTCCHHHHHHHHHHT-TEEEEESGGGCTTS--CCTTEEEEECSSS
T ss_pred cCCCCCHHHHHHHHHHC-CCEEechHHhcCCC--CCCCeEEEEcCCC
Confidence 87543345666666665 99999865443211 0135799998874
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=216.65 Aligned_cols=313 Identities=10% Similarity=0.039 Sum_probs=205.1
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.|.+..+... .++.+.+++.+.+..... .....|+...+..++++++++++.+.+|.. +.+++++||++|
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~---~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a 111 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDS---VALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS 111 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCH---HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCc---cccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence 356777776543 345688998888753110 000112233444688888888888888742 566667699999
Q ss_pred HHHHHHHccCCC-CEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPG-DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++.+| |+|++..+.++ .....+...|. +++.++.+ +++.+|++++++.+++ +++++++++++||
T Consensus 112 l~~~~~~l~~~g~d~vl~~~p~~~---~~~~~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~npt 185 (398)
T 3ele_A 112 LSICFRALTSDAYDEFITIAPYFP---EYKVFVNAAGA--RLVEVPADTEHFQIDFDALEERINA-HTRGVIINSPNNPS 185 (398)
T ss_dssp HHHHHHHHCCSTTCEEEEESSCCT---HHHHHHHHTTC--EEEEECCCTTTSSCCHHHHHHTCCT-TEEEEEECSSCTTT
T ss_pred HHHHHHHHcCCCCCEEEEeCCCch---hhHHHHHHcCC--EEEEEecCCcCCcCCHHHHHHHhCc-CCCEEEEcCCCCCC
Confidence 999999999999 99997775544 44455566677 45555655 3578999999998875 4667777666666
Q ss_pred -ccc---CHHHHHHHHHH------cCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEec
Q psy13354 179 -QYI---DFERFYHIAKN------INSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKK 243 (1342)
Q Consensus 179 -~~~---~l~~I~~la~~------~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~ 243 (1342)
... ++++|+++|++ ||++||+||+|+.+.+.+...+.... ..+++++|+||++ |+.| ||+++++
T Consensus 186 G~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~ 264 (398)
T 3ele_A 186 GTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSL-SLPGERIGYVLVPD 264 (398)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTS-SCTTTCCEEEECCT
T ss_pred CCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcC-CCccceeEEEEEcc
Confidence 222 48888899999 99999999999865543222222111 2468899999999 5455 9999998
Q ss_pred hhH------HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEE
Q psy13354 244 KYK------KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIIL 317 (1342)
Q Consensus 244 ~l~------~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~ 317 (1342)
+++ +.+..........+++...+.++...+ +... .++++.++++++.+.|.+.|+++.. +.+++++|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l-~~~~-----~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~ 337 (398)
T 3ele_A 265 EVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQ-GATG-----DINAYKENRDLLYEGLTRIGYHCFK-PDGAFYMF 337 (398)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCT-TCCC-----CHHHHHHHHHHHHHHHHHHTCCEEC-CSBSSEEE
T ss_pred hhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHh-cCHH-----HHHHHHHHHHHHHHHHHHcCCeecC-CCeeEEEE
Confidence 743 222221111111223233333333222 2111 3577888899999999988887654 45677799
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+.++.. ...++.. .+.++||.+.++..++. .+++|++++
T Consensus 338 ~~~~~~-~~~~~~~-~l~~~gi~v~~g~~~~~------~~~iRis~~ 376 (398)
T 3ele_A 338 VKALED-DSNAFCE-KAKEEDVLIVAADGFGC------PGWVRISYC 376 (398)
T ss_dssp EECSSS-CHHHHHH-HHHTTTEECEESGGGTC------TTEEEEECC
T ss_pred EEcCCC-CHHHHHH-HHHHCCEEEeCccccCC------CCeEEEEec
Confidence 988753 2344554 55677999998765543 246999986
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-19 Score=216.94 Aligned_cols=319 Identities=14% Similarity=0.106 Sum_probs=205.0
Q ss_pred CceeeeecC-----C-CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh------C--CC-Cce
Q psy13354 28 NNIELIASE-----N-YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF------N--AE-AAN 92 (1342)
Q Consensus 28 ~~i~l~a~~-----n-~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~------g--~~-~~v 92 (1342)
+.+.+..+. + ..++.+.+++.+.+..... ..|+...+..++++++++++.+.+ | .+ +.+
T Consensus 34 ~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v 107 (416)
T 1bw0_A 34 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQEC------NGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNV 107 (416)
T ss_dssp CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCS------SSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGE
T ss_pred CeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCcc------CCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceE
Confidence 457776664 2 3455699998888753211 123333445678886666665321 1 22 455
Q ss_pred EecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEE
Q psy13354 93 VQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIA 172 (1342)
Q Consensus 93 i~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~ 172 (1342)
++++||++|+..++.+++++||+|++..+.|+++ ...+...|..+..++++.+.++.+|++++++.+++. ++++++
T Consensus 108 ~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~v~i 183 (416)
T 1bw0_A 108 VLCSGGSHGILMAITAICDAGDYALVPQPGFPHY---ETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK-TKLLIV 183 (416)
T ss_dssp EEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHH---HHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT-EEEEEE
T ss_pred EEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhH---HHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccC-CeEEEE
Confidence 6665889999999999999999999888665543 444566777555554432234678999999988754 445544
Q ss_pred cCCCCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcC----CCCCCC--CC--CcEEEecCCccCCCCCe---
Q psy13354 173 GASAYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAG----EYPNPV--PF--ADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 173 ~~s~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~----~~~~~l--~~--~Divv~S~sK~l~gp~G--- 236 (1342)
+++++| ...+ +++|+++|++||++||+|++|..+.+.+. .+.... .. .+++++|+||++ +..|
T Consensus 184 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~Glr~ 262 (416)
T 1bw0_A 184 TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNL-VVPGWRL 262 (416)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT-SCGGGCC
T ss_pred eCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhC-CCCCceE
Confidence 445555 2335 99999999999999999999987543322 122211 11 247789999998 4444
Q ss_pred eEEEEech--hHHHHhhcc--CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC
Q psy13354 237 GFILMKKK--YKKIINSAV--FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT 311 (1342)
Q Consensus 237 G~iv~~~~--l~~~l~~~~--~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~ 311 (1342)
||++++++ +++.+.... ......+++...+.++..++......++++..+++.++++++.+.|.+. |+.+.. +.
T Consensus 263 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~ 341 (416)
T 1bw0_A 263 GWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTM-PR 341 (416)
T ss_dssp EEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECC-CC
T ss_pred EEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC-CC
Confidence 99998873 444332110 0111223445555555555442223467788899999999999999986 777643 45
Q ss_pred CCeEEEEEccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 312 KSHIILVDLRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 312 ~~~~v~i~~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+++++|+.++.. ..+.++...+++++||.+.++..++. .+++|++++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~iRis~~ 393 (416)
T 1bw0_A 342 GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA------PGFTRLTTT 393 (416)
T ss_dssp BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC------TTEEEEECC
T ss_pred eeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC------CCeEEEEec
Confidence 578888887531 23456677777667999998765442 246999985
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-19 Score=206.59 Aligned_cols=297 Identities=11% Similarity=0.062 Sum_probs=202.7
Q ss_pred hccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHH
Q psy13354 25 RQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQA 101 (1342)
Q Consensus 25 ~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A 101 (1342)
..++.|.|..++|++ +|.+.+++.+.... . .. |. ..+..++++ .+++++|.+ +.+++++|++++
T Consensus 14 ~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~-~~------y~-~~~~~~lr~----~la~~~~~~~~~i~~t~G~~~~ 80 (337)
T 3p1t_A 14 AAAQAVCLAFNENPEAVEPRVQAAIAAAAAR-I-NR------YP-FDAEPRVMR----KLAEHFSCPEDNLMLVRGIDEC 80 (337)
T ss_dssp CCCCCEECSSCCCCSCCCHHHHHHHHHHGGG-T-TS------CC-TTHHHHHHH----HHHHHHTSCGGGEEEESHHHHH
T ss_pred CCCCceEeeCCCCCCCCCHHHHHHHHHhhhh-h-cc------CC-CCchHHHHH----HHHHHhCcCHHHEEEeCCHHHH
Confidence 345668888888765 44588888776642 1 12 21 234445555 888888987 467777577779
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--c
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--Q 179 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~ 179 (1342)
+..++.++ +||+|++..+.+ ......+...|. +++.++.++++.+|++++++. .+++++++++++|| .
T Consensus 81 l~~~~~~~--~gd~vl~~~p~~---~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~---~~~~~v~i~~p~nptG~ 150 (337)
T 3p1t_A 81 FDRISAEF--SSMRFVTAWPGF---DGYRARIAVSGL--RHFEIGLTDDLLLDPNDLAQV---SRDDCVVLANPSNPTGQ 150 (337)
T ss_dssp HHHHHHHS--TTSEEEEESSSC---SHHHHHHTTSCC--EEEEECBCTTSSBCHHHHTTC---CTTEEEEEESSCTTTCC
T ss_pred HHHHHHhc--CCCeEEEeCCCc---HHHHHHHHHcCC--EEEEecCCCCCCCCHHHHHhh---cCCCEEEEeCCCCCCCC
Confidence 99998888 999999776444 444555566676 566667777788999999875 24567777666666 5
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
..++++|.++|+++++ +|+|++|..... ...........+++++|+||++ |+.| ||+++++++++.+......
T Consensus 151 ~~~~~~l~~l~~~~~~-~ivDea~~~~~~-~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~~~~~~~l~~~~~~- 226 (337)
T 3p1t_A 151 ALSAGELDQLRQRAGK-LLIDETYVDYSS-FRARGLAYGENELVFRSFSKSY-GLAGLRLGALFGPSELIAAMKRKQWF- 226 (337)
T ss_dssp CCCHHHHHHHHHHCSE-EEEECTTGGGSS-CSSSCCCCBTTEEEEEESSSTT-CCTTTCCEEEECCHHHHHHHHTTSCT-
T ss_pred CCCHHHHHHHHHhCCc-EEEECCChhhcc-ccccccccCCCEEEEeeCchhc-cCcchheEEEEeCHHHHHHHHhhcCC-
Confidence 5599999999999997 566999874222 1111111223578999999999 5555 9999999999888764332
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
.+++.+.+.++..++.. . .++.+..+++.++++++.+.|.+.|+.+.. +.+.++|+..++ . +.+..++.+
T Consensus 227 --~~~~~~~~~a~~~~l~~-~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~~---~-~~~~~~l~~ 296 (337)
T 3p1t_A 227 --CNVGTLDLHALEAALDN-D-RAREAHIAKTLAQRRRVADALRGLGYRVAS--SEANFVLVENAA---G-ERTLRFLRE 296 (337)
T ss_dssp --TCSCHHHHHHHHHHHTC-H-HHHHHHHHHHHHHHHHHHHHHHHTTCCBCC--CSSSEEEEECTT---T-HHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHhCC-H-HHHHHHHHHHHHHHHHHHHHHHHCcCEECC--CCCeEEEEEcCC---H-HHHHHHHHH
Confidence 23334455554444332 2 245566778888899999999998887643 455677777653 2 344556667
Q ss_pred CCceeeeccCCCCCCCcccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+||.+.++..++. .+++|++++
T Consensus 297 ~gi~v~~g~~~~~------~~~iRis~~ 318 (337)
T 3p1t_A 297 RGIQVKDAGQFGL------HHHIRISIG 318 (337)
T ss_dssp TTEECEEGGGGTC------CSEEEEECC
T ss_pred CCeEEEECccCCC------CCeEEEecC
Confidence 7999998766543 247999987
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-19 Score=208.56 Aligned_cols=298 Identities=13% Similarity=0.115 Sum_probs=200.5
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhcc--ccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKY--AEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~--~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~ 102 (1342)
+.|.+..+++.+ ++.+++++.+.+.... ..+|+. ....++++ .+++++|.+ +.+++++||++|+
T Consensus 27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~-------~~~~~lr~----~la~~~g~~~~~i~~t~g~~~al 95 (360)
T 3hdo_A 27 SWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPS-------ASSQKLRE----VAGELYGFDPSWIIMANGSDEVL 95 (360)
T ss_dssp TSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCC-------SSCHHHHH----HHHHHHTCCGGGEEEESSHHHHH
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCC-------CchHHHHH----HHHHHhCcCcceEEEcCCHHHHH
Confidence 458888887664 4559999888875320 112221 11235555 888888865 5566666999999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cc
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QY 180 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~ 180 (1342)
..++.+++++||+|++..+.++ .....+...|. +++.++.++++.+ +++.+ ..++++++++++++| ..
T Consensus 96 ~~~~~~l~~~gd~Vl~~~p~~~---~~~~~~~~~g~--~~~~v~~~~~~~~--~~l~~---~~~~~~v~i~~p~nptG~~ 165 (360)
T 3hdo_A 96 NNLIRAFAAEGEEIGYVHPSYS---YYGTLAEVQGA--RVRTFGLTGDFRI--AGFPE---RYEGKVFFLTTPNAPLGPS 165 (360)
T ss_dssp HHHHHHHCCTTCEEEEESSSCT---HHHHHHHHHTC--EEEEECBCTTSSB--TTCCS---SBCSSEEEEESSCTTTCCC
T ss_pred HHHHHHHhCCCCEEEEcCCChH---HHHHHHHHCCC--EEEEeeCCCCCCH--HHHHh---hcCCCEEEEeCCCCCCCCC
Confidence 9999999999999997775554 44445566676 5555566666655 33332 234557776666665 55
Q ss_pred cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--CCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCC
Q psy13354 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--PFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 181 ~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~ 255 (1342)
.++++|.++|+++|++||+||+|+.. ......... ...+++++|+||++ |+.| ||+++++++++.+......
T Consensus 166 ~~~~~l~~l~~~~~~~li~De~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~ 242 (360)
T 3hdo_A 166 FPLEYIDELARRCAGMLVLDETYAEF--AESNALELVRRHENVVVTRTLSKSY-SLAGMRIGLAIARPEVIAALDKIRDH 242 (360)
T ss_dssp CCHHHHHHHHHHBSSEEEEECTTGGG--SSCCCTHHHHHCSSEEEEEESTTTT-SCTTSCCEEEECCHHHHHHHHHHSCS
T ss_pred cCHHHHHHHHHHCCCEEEEECChHhh--CCcchhHHhccCCCEEEEecchHhh-cCCccceeeEeeCHHHHHHHHHhCCC
Confidence 59999999999999999999999753 111111000 12358899999999 5444 9999999999888775443
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
+ +++...+.++..++. . .+++++.++++.++++++.+.|.+.|+.+. +..++++|+.++.. ...++.. .+.
T Consensus 243 ~---~~~~~~~~a~~~~l~-~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~~-~l~ 313 (360)
T 3hdo_A 243 Y---NLDRLAQAACVAALR-D-QAYLSECCRRIRETREWFTTELRSIGYDVI--PSQGNYLFATPPDR-DGKRVYD-GLY 313 (360)
T ss_dssp C---CSCHHHHHHHHHHHH-C-HHHHHHHHHHHHHHHHHHHHHHHHTTCEEC--CCSSSEEEEECTTC-CHHHHHH-HHH
T ss_pred C---CCCHHHHHHHHHHhc-C-HHHHHHHHHHHHHHHHHHHHHHHHCCCEEc--CCCccEEEEECCCC-CHHHHHH-HHH
Confidence 2 233445555444444 3 346788889999999999999999888774 34567888877632 2334444 455
Q ss_pred HCCceeeeccCCCCCCCcccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++||.+.++..+.. .+++|++++
T Consensus 314 ~~gi~v~~~~~~~~------~~~iRis~~ 336 (360)
T 3hdo_A 314 ARKVLVRHFSDPLL------AHGMRISIG 336 (360)
T ss_dssp HTTEECBCCCSTTT------TTSEEEECC
T ss_pred HCCEEEEECCCCCC------CCEEEEEcC
Confidence 67999987544221 357999987
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=221.98 Aligned_cols=311 Identities=12% Similarity=0.074 Sum_probs=205.7
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC-C---CCceEecCCHHHHHHHHHHHccCCCC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN-A---EAANVQPHSGSQANQAVFFSVLNPGD 114 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g-~---~~~vi~~~sGs~A~~~al~al~~pGD 114 (1342)
+|..+.+++.+.+.... ......|+...+..++++++++++.+..| . .+.+++++|+++|+..++.+++.+||
T Consensus 102 ~P~~~~~~~~~~l~~~~---~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd 178 (498)
T 3ihj_A 102 FPEDAKKRARRILQACG---GNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGG 178 (498)
T ss_dssp SCHHHHHHHHHHHHHC-------------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCG
T ss_pred CCHHHHHHHHHHHHhcc---CCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCC
Confidence 45556666666664221 11123355556667899988888888875 3 24555665999999999999999875
Q ss_pred ----EEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhc----CCeEEEEcCCCCC-----c
Q psy13354 115 ----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKN----KPKLIIAGASAYS-----Q 179 (1342)
Q Consensus 115 ----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~----~~~liv~~~s~~~-----~ 179 (1342)
+|+++.+.|+. +...+...|. .+++++++ .+|.+|++++++.+++. +++++++++++|| .
T Consensus 179 ~~~d~Vlv~~p~y~~---~~~~~~~~g~--~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s 253 (498)
T 3ihj_A 179 KSRTGVMIPIPQYPL---YSAVISELDA--IQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQS 253 (498)
T ss_dssp GGSEEEEEEESCCTH---HHHHHHHTTC--EEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCC
T ss_pred CCCCEEEEeCCCchh---HHHHHHHcCC--EEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCC
Confidence 99988766554 4445566677 44444554 45789999999999874 3566666666666 2
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-CCCCCCC-----------CC-cEEEecCCccCC---CCCeeEEE---
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-EYPNPVP-----------FA-DFITSTTHKSLR---GPRGGFIL--- 240 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~~~~~l~-----------~~-Divv~S~sK~l~---gp~GG~iv--- 240 (1342)
..++++|+++|++||++||+||+|..+.+..+ .+.+... .. .++++|+||++. |..+||++
T Consensus 254 ~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~ 333 (498)
T 3ihj_A 254 RKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVIN 333 (498)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEES
T ss_pred HHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEec
Confidence 23688899999999999999999987666433 2222111 01 267889999994 44449998
Q ss_pred EechhHHHHhhccCCccccCCcHHHHHHHHHHHH----------HhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC
Q psy13354 241 MKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFK----------EVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSG 309 (1342)
Q Consensus 241 ~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~----------~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~ 309 (1342)
.++++++.+..... ...+++.+.+.++..++. .+. .+...+++++.++++++.+.|.+. |+.+..
T Consensus 334 ~~~~l~~~l~~~~~--~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~- 409 (498)
T 3ihj_A 334 LHPEIKGQLVKLLS--VRLCPPVSGQAAMDIVVNPPVAGEESFEQFS-REKESVLGNLAKKAKLTEDLFNQVPGIHCNP- 409 (498)
T ss_dssp CCHHHHHHHHHHHH--HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSTTEECCC-
T ss_pred CCHHHHHHHHHHHh--ccCCCCHHHHHHHHHHhcCCccCcccHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCcEecC-
Confidence 57788887765432 233444556655544432 111 134566788999999999999986 777643
Q ss_pred CCCCeEEEEEccCC----------CCC-HHH-HHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 310 GTKSHIILVDLRNK----------KIT-GKI-AESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 310 ~~~~~~v~i~~~~~----------~~~-~~~-~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+.+++++|+++..+ +.+ .++ +..+++++||.+.++..|+.+.+ .+++|+++.
T Consensus 410 p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~---~~~~Ris~~ 473 (498)
T 3ihj_A 410 LQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREG---TYHFRMTIL 473 (498)
T ss_dssp CCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTT---CCBEEEECC
T ss_pred CCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCC---CCEEEEEeC
Confidence 56677888766421 122 233 67788888999999877765332 468999995
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.9e-19 Score=207.07 Aligned_cols=298 Identities=15% Similarity=0.128 Sum_probs=202.3
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
++.|.+..+++++ ++.+.+++.+.+.. . ..|+. ....++++ .+++++|.+ +.+++++||++|+.
T Consensus 26 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~-~-~~y~~-------~~~~~l~~----~la~~~~~~~~~i~~~~g~t~al~ 92 (361)
T 3ftb_A 26 RELLDYSSNINPLGIPKSFLNNIDEGIKN-L-GVYPD-------VNYRRLNK----SIENYLKLKDIGIVLGNGASEIIE 92 (361)
T ss_dssp --CEETTCCCCTTCSCHHHHTTHHHHHHG-G-GSCCC-------TTCHHHHH----HHHHHHTCCSCEEEEESSHHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHH-h-cCCCC-------ccHHHHHH----HHHHHhCCCcceEEEcCCHHHHHH
Confidence 4568888887665 45688888887753 2 23321 22235555 888888865 56666669999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c-cc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q-YI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~-~~ 181 (1342)
.++.++ |+|++....+. .....+...|. +++.++.++++.++++++++.+++ +++++++++++| + ..
T Consensus 93 ~~~~~~----d~vi~~~~~~~---~~~~~~~~~g~--~~~~~~~~~~~~~~~~~l~~~l~~--~~~v~i~~p~nptG~~~ 161 (361)
T 3ftb_A 93 LSISLF----EKILIIVPSYA---EYEINAKKHGV--SVVFSYLDENMCIDYEDIISKIDD--VDSVIIGNPNNPNGGLI 161 (361)
T ss_dssp HHHTTC----SEEEEEESCCT---HHHHHHHHTTC--EEEEEECCTTSCCCHHHHHHHTTT--CSEEEEETTBTTTTBCC
T ss_pred HHHHHc----CcEEEecCChH---HHHHHHHHcCC--eEEEeecCcccCCCHHHHHHhccC--CCEEEEeCCCCCCCCCC
Confidence 999988 99998775544 44445566677 455556665666789999999887 556666565655 2 22
Q ss_pred ---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEE-EechhHHHH
Q psy13354 182 ---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFIL-MKKKYKKII 249 (1342)
Q Consensus 182 ---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv-~~~~l~~~l 249 (1342)
++++|+++|++||+++|+|++|+.+... ....... ...++++|+||++ |+.| ||++ .++++++.+
T Consensus 162 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~g~~~~~~~~~~~~~ 238 (361)
T 3ftb_A 162 NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD--PSSSFVGEIKNYSCLFIIRAMTKFF-AMPGIRFGYGITNNKEIAAKI 238 (361)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECSSGGGTCC--TTSSSGGGTTTCSSEEEEEESSSTT-SCGGGCCEEEEESCHHHHHHH
T ss_pred CHHHHHHHHHHhhhcCCEEEEECcchhhcCC--cccchhHhcccCCCEEEEeeChhhc-CCCCcceeEEEeCCHHHHHHH
Confidence 5888999999999999999999765543 1111111 1347789999999 6555 9988 788898888
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcE-EeeCCCCCeEEEEEccCCCCCH
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIR-IVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~-~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
......+ +++.+.+.++..++.+ .+++++.++++.++++++.+.|.+. ++. +.. +.++++|+.++. ....
T Consensus 239 ~~~~~~~---~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~ 310 (361)
T 3ftb_A 239 KAKQNPW---NINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRVFS--PHANFVLCRLEN-ISGE 310 (361)
T ss_dssp HTTSCTT---CSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEC--CSSSEEEEEESS-SCHH
T ss_pred HhhCCCC---CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecC--CCCeEEEEEcCC-CCHH
Confidence 7754433 3444455554444432 2467788899999999999999987 676 433 456678888876 2344
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++...+++ +||.+.++..++... .+++|++++
T Consensus 311 ~l~~~l~~-~gi~v~~g~~~~~~~----~~~iRis~~ 342 (361)
T 3ftb_A 311 KLYDSLLK-EDIVIRRCCNFIGLD----DSFVRFAIK 342 (361)
T ss_dssp HHHHHHHT-TTEECEECTTSTTCC----TTEEEEECC
T ss_pred HHHHHHHH-CCeEEeeCccCCCCC----CCEEEEEcC
Confidence 55555555 499999875443221 457999987
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=217.72 Aligned_cols=327 Identities=16% Similarity=0.171 Sum_probs=214.5
Q ss_pred cCceeee-ecCCCCcHHHHHHHhHHHH--hccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH
Q psy13354 27 NNNIELI-ASENYTSLAVMEAQGTLLT--NKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN 102 (1342)
Q Consensus 27 ~~~i~l~-a~~n~l~~~v~eal~~~l~--~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~ 102 (1342)
.+.+-+. ++....++.+++++.+.+. +.+ +++....+.......+..+.+++++++++|.+ +.+++++||++|+
T Consensus 21 ~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~ 98 (423)
T 3lvm_A 21 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTF--GNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESD 98 (423)
T ss_dssp CSSEECBTTTCCCCCHHHHHHHTTSSSTTSCC--SCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHH
T ss_pred CCCEeecCCCcCCCCHHHHHHHHHHHhhcccc--cCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHH
Confidence 3444444 3345677789999888775 333 33332122223344566677888999999987 4556666999999
Q ss_pred HHHHHHccC----CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 103 QAVFFSVLN----PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 103 ~~al~al~~----pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
..++.++.. +||+|+++...++++......+...|. +++.++.++++.+|++++++.+++ +++++++++++++
T Consensus 99 ~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~np 175 (423)
T 3lvm_A 99 NLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGF--EVTYLAPQRNGIIDLKELEAAMRD-DTILVSIMHVNNE 175 (423)
T ss_dssp HHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTC--EEEEECCCTTSCCCHHHHHHHCCT-TEEEEECCSBCTT
T ss_pred HHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCC--EEEEeccCCCCccCHHHHHHhcCC-CcEEEEEeCCCCC
Confidence 999998874 899999888777665444444455566 556667777888999999999875 4577777666555
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~ 254 (1342)
...++++|+++|++||++||+|++|+.+.... .... .+|++++|+||++ |+.| |+++++++..+.+.....
T Consensus 176 tG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~----~~~~~~~di~~~s~sK~~-g~~g~G~~~~~~~~~~~~~~~~~ 250 (423)
T 3lvm_A 176 IGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPI----DLSQLKVDLMSFSGHKIY-GPKGIGALYVRRKPRVRIEAQMH 250 (423)
T ss_dssp TCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCC----CTTTSCCSEEEEESTTTT-SCSSCEEEEECBTTBCCCCCSSC
T ss_pred CccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCc----ChhhcCCCEEEechHHhc-CCCCeEEEEEeccccCCCCcccc
Confidence 45589999999999999999999998754411 1111 3689999999987 7777 999999876555543222
Q ss_pred ------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCC--CeEEEEEccCCCC
Q psy13354 255 ------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTK--SHIILVDLRNKKI 325 (1342)
Q Consensus 255 ------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~--~~~v~i~~~~~~~ 325 (1342)
....++++.....++..++.... .+++++.+++.++++++.+.|.+. |+.+..++.. .+++++.+.. .
T Consensus 251 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 327 (423)
T 3lvm_A 251 GGGHERGMRSGTLPVHQIVGMGEAYRIAK-EEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNY--V 327 (423)
T ss_dssp SSCTTTTTCCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETT--S
T ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCC--C
Confidence 12234444555555555544433 357788899999999999999887 7877553221 2455555532 2
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCC-------------Ccccccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPE-------------KPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~-------------~~~~~~~lRi~~~~~~t 368 (1342)
+.+.+...+.+ |.+.++..+.... .....+.+|++++..++
T Consensus 328 ~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t 381 (423)
T 3lvm_A 328 EGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT 381 (423)
T ss_dssp CHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCC
T ss_pred CHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCC
Confidence 34444555544 7766543211100 00013579999886554
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=216.46 Aligned_cols=309 Identities=14% Similarity=0.148 Sum_probs=196.0
Q ss_pred CceeeeecC------CC-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCH
Q psy13354 28 NNIELIASE------NY-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~------n~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sG 98 (1342)
+.+++..++ ++ .++.+.+++.+.... ...+ |+...+..++++++.+++....+.+ ..+++++||
T Consensus 39 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~------y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~ 111 (418)
T 3rq1_A 39 NVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDS-EHVG------YAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGG 111 (418)
T ss_dssp GCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHH-HHHS------CCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHH
T ss_pred CeEECCCCcccCCCCCccccHHHHHHHHHhccc-ccCC------CCCCCChHHHHHHHHHHHhcccCccccccEEECCch
Confidence 557887774 33 444477775543221 1112 2333345688887777777666655 144555499
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHh----cCCeEEEEc
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKK----NKPKLIIAG 173 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~----~~~~liv~~ 173 (1342)
++|+..++.++++|||+|+++.+.++ .+...+...|. +++.++.+ +++.+|++.+++.+++ .++.+++++
T Consensus 112 ~~al~~~~~~l~~~gd~Vl~~~p~~~---~~~~~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~ 186 (418)
T 3rq1_A 112 TGGIHHLIHNYTEPGDEVLTADWYWG---AYRVICSDTGR--TLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFN 186 (418)
T ss_dssp HHHHHHHHHHHSCTTCEEEEESSCCT---HHHHHHHHTTC--EEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCch---hHHHHHHHcCC--EEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEe
Confidence 99999999999999999998775544 44455566777 45555653 4578999999999876 344467776
Q ss_pred CC-CCC--ccc---CHHHHHHHHH------HcCCEEEEEcccchhhhhcC---CCCCCCCC--Cc---EEEecCCccCCC
Q psy13354 174 AS-AYS--QYI---DFERFYHIAK------NINSYFMVDMAHYAGLIAAG---EYPNPVPF--AD---FITSTTHKSLRG 233 (1342)
Q Consensus 174 ~s-~~~--~~~---~l~~I~~la~------~~gi~LIvDea~~~g~~~~~---~~~~~l~~--~D---ivv~S~sK~l~g 233 (1342)
++ +|| ... .+++|+++|+ +||++||+||+|........ ........ .+ ++++|+||++ |
T Consensus 187 ~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~ 265 (418)
T 3rq1_A 187 TPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGF-T 265 (418)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTT-T
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCC-c
Confidence 55 565 222 4666777777 89999999999854332111 00011111 12 7789999999 6
Q ss_pred CCe---eEEEE---echhHHHHhhccCCc---cccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHH
Q psy13354 234 PRG---GFILM---KKKYKKIINSAVFPG---IQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 234 p~G---G~iv~---~~~l~~~l~~~~~~~---~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
+.| ||+++ ++++++.+....... .+++++...+.++..++.+. .....+.+++++.++++++.+.|
T Consensus 266 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 345 (418)
T 3rq1_A 266 MYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEA 345 (418)
T ss_dssp CCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556 99998 788888776532111 11223344444444333221 11133456778889999999999
Q ss_pred HhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 300 DQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 300 ~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.|+++.. +.+++++|+.+. .+.++.. ++.++||.+.++ .+++|++++.
T Consensus 346 ~~~g~~~~~-~~~~~~~~~~~~---~~~~~~~-~l~~~gi~v~~g-----------~~~iRis~~~ 395 (418)
T 3rq1_A 346 AQVGLPMLP-YRGGFFITIPTD---SANAICE-ELKKEHIYVIAL-----------ANGIRIAACG 395 (418)
T ss_dssp HHHTCCCCC-CCSSSEEEEECT---THHHHHH-HHHHTTEECEEC-----------SSEEEEEGGG
T ss_pred HhcCCCCCC-CCceEEEEcCCC---CHHHHHH-HHHhCCEEEecC-----------CCCeEEEEec
Confidence 988887643 456778888764 2345554 566779999874 2469999763
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.6e-20 Score=214.25 Aligned_cols=308 Identities=19% Similarity=0.194 Sum_probs=190.9
Q ss_pred ceeeeecCCCCc-HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHH
Q psy13354 29 NIELIASENYTS-LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 29 ~i~l~a~~n~l~-~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~ 107 (1342)
.|.+.++.+..+ +.+++++..... + ...|+..+...++++ .+++++|.+.+++++ ||++|+..++.
T Consensus 5 ~i~~~~~~~~~p~~~~~~a~~~~~~-----~---~~~y~~~~~~~~l~~----~la~~~g~~~~~~~~-~gt~a~~~~~~ 71 (347)
T 1jg8_A 5 MIDLRSDTVTKPTEEMRKAMAQAEV-----G---DDVYGEDPTINELER----LAAETFGKEAALFVP-SGTMGNQVSIM 71 (347)
T ss_dssp CEECSCGGGCCCCHHHHHHHHTCCC-----C---CGGGTCCHHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHH
T ss_pred EEEeccccCCCCCHHHHHHHhcCCC-----C---CcccCCChHHHHHHH----HHHHHhCCceEEEec-CcHHHHHHHHH
Confidence 356666665544 447777643321 1 112444455555555 889999988776666 99999999999
Q ss_pred HccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--cc
Q psy13354 108 SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--QY 180 (1342)
Q Consensus 108 al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~~ 180 (1342)
++++|||+|+++.+.|+..+.........|. +++++ .++++.+|++++++++++. ++++|+++++++| +.
T Consensus 72 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~--~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~ 148 (347)
T 1jg8_A 72 AHTQRGDEVILEADSHIFWYEVGAMAVLSGV--MPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGR 148 (347)
T ss_dssp HHCCTTCEEEEETTCHHHHSSTTHHHHHTCC--EEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSB
T ss_pred HhcCCCCEEEEcCcchhhhccccchhhccCe--EEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCc
Confidence 9999999999877555432221223455666 44545 3456778999999988752 4577777666554 22
Q ss_pred ----cCHHHHHHHHHHcCCEEEEEcccchhhhh-cCCCCCCC-CCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC
Q psy13354 181 ----IDFERFYHIAKNINSYFMVDMAHYAGLIA-AGEYPNPV-PFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 181 ----~~l~~I~~la~~~gi~LIvDea~~~g~~~-~~~~~~~l-~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~ 254 (1342)
.++++|+++|++||++||+|++|..+... .+.....+ ..+|.+++|+||+++++.||++++++++++.+.....
T Consensus 149 ~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~~~~ 228 (347)
T 1jg8_A 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARK 228 (347)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCHHHHHHHHHHHH
Confidence 24689999999999999999998654321 12111111 1357888899999966766778888888776644222
Q ss_pred CccccCCcHHHHHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC-CCCHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAK-AVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK-KITGKIAES 332 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aa-a~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~ 332 (1342)
.+..+.......+++ ..++..... .+ ++..++++++.+.|.+.|+.+...+..++++|+.++.. ....++...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~----~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (347)
T 1jg8_A 229 MLGGGMRQAGVLAAAGIIALTKMVD-RL----KEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEA 303 (347)
T ss_dssp HHTCCCSSTHHHHHHHHHHHHHSST-TH----HHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSSCHHHHHHH
T ss_pred HcCCchhHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHhcCceeccCCCcceEEEEEcccccCCHHHHHHH
Confidence 221111112222222 233333222 32 23345778888888877776432234567899988642 234466666
Q ss_pred HHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+ +||.+.+.. .+++|++++..++
T Consensus 304 l~~-~gi~v~~~~----------~~~iRl~~~~~~~ 328 (347)
T 1jg8_A 304 LRN-SGVLANAVS----------DTEIRLVTHKDVS 328 (347)
T ss_dssp HHH-HTEECEEEE----------TTEEEEECCTTSC
T ss_pred HHH-CCCEEecCC----------CCeEEEEeCCCCC
Confidence 654 599998641 2469998866544
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-19 Score=207.48 Aligned_cols=293 Identities=14% Similarity=0.140 Sum_probs=196.3
Q ss_pred CceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.|.|..++|+++++ + + +. .... |... ...++++ .+++++|.+ +.+++++||++++..
T Consensus 30 ~~i~l~~~~~~~~~~~~v--a----~~--~~~~------Y~~~-~~~~lr~----~la~~~~~~~~~v~~~~G~~~ai~~ 90 (356)
T 1fg7_A 30 GDVWLNANEYPTAVEFQL--T----QQ--TLNR------YPEC-QPKAVIE----NYAQYAGVKPEQVLVSRGADEGIEL 90 (356)
T ss_dssp CSEECSSCCCSSCCCCCC--C----CC--CTTS------CCCS-SCHHHHH----HHHHHHTSCGGGEEEESHHHHHHHH
T ss_pred ceEEeeCCCCCCCCCHhH--h----hh--hhcc------CCCc-cHHHHHH----HHHHHhCCChHHEEEcCCHHHHHHH
Confidence 458888988876654 3 1 10 1111 2221 1335555 788888877 566677577889999
Q ss_pred HHHHccCCC-CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 105 VFFSVLNPG-DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 105 al~al~~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
++.+++++| |+|+++.+.+++ ....+...|. +++.++.++++.+|++++++.++ +++++++++++|| ...
T Consensus 91 ~~~~~~~~g~d~Vl~~~p~~~~---~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~--~~~~v~l~~p~nptG~~~ 163 (356)
T 1fg7_A 91 LIRAFCEPGKDAILYCPPTYGM---YSVSAETIGV--ECRTVPTLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLI 163 (356)
T ss_dssp HHHHHCCTTTCEEEECSSSCTH---HHHHHHHHTC--EEEECCCCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCC
T ss_pred HHHHHhCCCCCEEEEeCCChHH---HHHHHHHcCC--EEEEeeCCCCCCCCHHHHHHHhc--CCCEEEEeCCCCCCCCCC
Confidence 999999999 999977655544 3444455566 55666766677899999998776 4567777677766 233
Q ss_pred C---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhcc
Q psy13354 182 D---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAV 253 (1342)
Q Consensus 182 ~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~ 253 (1342)
+ +++|+++|+ +|++||+||+|..+.. ........+ ..+++++|+||++ |+.| ||+++++++++.+....
T Consensus 164 ~~~~l~~l~~~~~-~~~~li~De~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~l~~~~ 240 (356)
T 1fg7_A 164 NPQDFRTLLELTR-GKAIVVADEAYIEFCP-QASLAGWLAEYPHLAILRTLSKAF-ALAGLRCGFTLANEEVINLLMKVI 240 (356)
T ss_dssp CHHHHHHHHHHHT-TTCEEEEECTTGGGSG-GGCSGGGTTTCTTEEEEEESSSTT-CCGGGCCEEEEECHHHHHHHHHHS
T ss_pred CHHHHHHHHHhCC-CCCEEEEEccchhhcC-CCcHHHHHhhCCCEEEEecchHhh-cCchhhhEEEEeCHHHHHHHHHhc
Confidence 4 566667777 9999999999985431 111111111 2468899999999 6666 99999999988887754
Q ss_pred CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 254 FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 254 ~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
.++ +.+.+.+.++..++.+...+++++.++++.++++++.+.|.+.+ +.+ .+..++++|+.++ ...++..
T Consensus 241 ~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~---~~~~l~~ 312 (356)
T 1fg7_A 241 APY---PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQV--FDSETNYILARFK---ASSAVFK 312 (356)
T ss_dssp CSS---CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEE--CCCSSSEEEEEET---THHHHHH
T ss_pred CCC---CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEE--CCCCCeEEEEECC---CHHHHHH
Confidence 444 23344555544444332111367788889999999999999876 333 2456778899886 2345566
Q ss_pred HHHHHCCceeee-ccCCCCCCCcccccccccccc
Q psy13354 332 SILESANIICNK-NSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 332 ~ll~~~GI~v~~-~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.+ .++||.+.+ +..++. .+++|++++
T Consensus 313 ~L-~~~gI~v~~~g~~~~~------~~~iRis~~ 339 (356)
T 1fg7_A 313 SL-WDQGIILRDQNKQPSL------SGCLRITVG 339 (356)
T ss_dssp HH-HHTTEECEECTTSTTC------TTEEEEECC
T ss_pred HH-HHCCEEEEECCCCCCC------CCeEEEEeC
Confidence 55 567999998 544442 246999986
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=215.66 Aligned_cols=303 Identities=21% Similarity=0.179 Sum_probs=198.6
Q ss_pred cchHHH---HHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHh
Q psy13354 11 IDPKIW---EIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIF 86 (1342)
Q Consensus 11 ~~~~~~---~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~ 86 (1342)
+++.+. +.+..+.+++...+...+..|. +.|++++.+........+. ...|.+ ..+...++ +.+++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~n~--~~Vl~a~~~~~~~~~~~~~--~~gy~Y~~~g~~~Le----~~lA~l~ 87 (427)
T 3hvy_A 16 INERVLELYERALNDVEKEFKYYDEIREYNQ--LKVLKAFQEERISESHFTN--SSGYGYNDIGRDSLD----RVYANIF 87 (427)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCC--CCTTCTTCHHHHHHH----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHhccc--CcCCCCCchhHHHHH----HHHHHHh
Confidence 345555 5555555555555666666665 6688888776432221111 222222 22344455 4899999
Q ss_pred CCCCceEe--cCCHHHHHHHHHHHccCCCCEEEEee-ccCCccchhh--------HHhhhCCceeEEEEecCCCCCCCCH
Q psy13354 87 NAEAANVQ--PHSGSQANQAVFFSVLNPGDTIMGMS-LQEGGHLTHG--------MMLNMSGKWFNSICYGLNKKEKIDY 155 (1342)
Q Consensus 87 g~~~~vi~--~~sGs~A~~~al~al~~pGD~Vlv~~-~~~~~~~s~~--------~~~~~~g~~~~~v~~~~~~~~~id~ 155 (1342)
|.+.++++ ++||++|+..++.++++|||+|++.. ..++++.... ..+...|. +++.++. +++.+|+
T Consensus 88 g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~--~~~~v~~-~~~~~d~ 164 (427)
T 3hvy_A 88 NTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV--KYKMVDL-KDGKVDI 164 (427)
T ss_dssp TCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC--EEEECCC-BTTBCCH
T ss_pred CCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCC--EEEEecC-CCCCcCH
Confidence 99988773 34999999999999999999999876 5555443221 22334455 5555566 6788999
Q ss_pred HHHHHHHHh-cCCeEEEEcC----CCCC--cccCHHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEe
Q psy13354 156 KKVEYLAKK-NKPKLIIAGA----SAYS--QYIDFERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP-FADFITS 225 (1342)
Q Consensus 156 e~Le~~i~~-~~~~liv~~~----s~~~--~~~~l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~ 225 (1342)
+++++++++ .++++|++++ ++++ ...++++|+++|++ +|++|++|++|+.+.+. ..+.. .+|++++
T Consensus 165 e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~----~~p~~~gaDiv~~ 240 (427)
T 3hvy_A 165 NTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEE----KEPTDVGADIIAG 240 (427)
T ss_dssp HHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSS----SCGGGGTCSEEEE
T ss_pred HHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccC----CCCcccCCeEEEE
Confidence 999999984 4677888776 5555 44589999999999 89999999999766531 12222 3799999
Q ss_pred cCCccCCC---CCeeEEEEechhHHHHhhccCCcccc--CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 226 TTHKSLRG---PRGGFILMKKKYKKIINSAVFPGIQG--GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 226 S~sK~l~g---p~GG~iv~~~~l~~~l~~~~~~~~~~--~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
|+||+++| +.||++++++++++.++........+ ...++..+.+ + .+.+. ....++++..+++.++.+.|+
T Consensus 241 S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~--~-~~gl~-~~~~r~~~~~~~a~~la~~L~ 316 (427)
T 3hvy_A 241 SLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRS--L-YEGLF-MAPHVTIEAVKGAVFCARIME 316 (427)
T ss_dssp ETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHH--H-HHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHH--H-HHhHh-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999966 67899999999999887632221111 1111111111 1 11111 234567889999999999999
Q ss_pred hCCcEEeeCCCCCe-----EEEEEccCCCCCHHHHHHHH
Q psy13354 301 QRGIRIVSGGTKSH-----IILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 301 ~~g~~~~~~~~~~~-----~v~i~~~~~~~~~~~~~~ll 334 (1342)
+.|+++.+. .++ ++.+.+.+......+++.+.
T Consensus 317 ~~g~~V~p~--~~~~~~~li~~~~l~~~~~~~~f~~~l~ 353 (427)
T 3hvy_A 317 LAGFDVLPK--YNDKRTDIIQAIKFNDEKKLIDFIKGIQ 353 (427)
T ss_dssp HTTCEEESC--TTSCCSSSEEEEECSSHHHHHHHHHHHH
T ss_pred hCCCeecCC--CCCCCceEEEEEeCCCHHHHHHHHHHhc
Confidence 999988432 344 77888764322233444443
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=216.06 Aligned_cols=304 Identities=20% Similarity=0.182 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccC-CcchHHHHHHHHHHHHHHHhCCCCce
Q psy13354 14 KIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYG-GCKFIDLIEKIAINRLKKIFNAEAAN 92 (1342)
Q Consensus 14 ~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~-~~~~~~~Le~~~~~~la~~~g~~~~v 92 (1342)
.+++.+.++..++...+...+..|. +.|++++.+........+. +..|. +..+..++++ .+++++|.+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~a~~n~--~~Vl~A~~~~~~~~~~~~~--~~gy~y~~~~~~~Le~----~lA~l~g~e~al 92 (427)
T 3i16_A 21 KLYETAMNDIQNQFKILDDIREFNQ--LKVLNAFQEERISEAHFTN--SSGYGYGDIGRDSLDA----VYARVFNTESAL 92 (427)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCC--CCTTCTTCHHHHHHHH----HHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHhchhHHhcCC--CCCCCCCHHHHHHHHH----HHHHHhCCcceE
Confidence 4445554544444455555555554 5588887664321111111 22232 2333445554 899999999887
Q ss_pred Ee--cCCHHHHHHHHHHHccCCCCEEEEee-ccCCccchhh--------HHhhhCCceeEEEEecCCCCCCCCHHHHHHH
Q psy13354 93 VQ--PHSGSQANQAVFFSVLNPGDTIMGMS-LQEGGHLTHG--------MMLNMSGKWFNSICYGLNKKEKIDYKKVEYL 161 (1342)
Q Consensus 93 i~--~~sGs~A~~~al~al~~pGD~Vlv~~-~~~~~~~s~~--------~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~ 161 (1342)
++ ++||++|+..++.++++|||+|++.. ..++++.... ..+...|. +++.++.+++|.+|+++++++
T Consensus 93 v~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~--~~~~v~~~~~g~~D~e~l~~~ 170 (427)
T 3i16_A 93 VRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGI--NYKQVDLKEDGKPNLEEIEKV 170 (427)
T ss_dssp EETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTC--EEEECCCCTTSSCCHHHHHHH
T ss_pred EeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCC--EEEEecCccCCCcCHHHHHHH
Confidence 73 34999999999999999999999876 5565543222 23344455 666667777888999999999
Q ss_pred HHh-cCCeEEEEcC----CCCC--cccCHHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccC
Q psy13354 162 AKK-NKPKLIIAGA----SAYS--QYIDFERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSL 231 (1342)
Q Consensus 162 i~~-~~~~liv~~~----s~~~--~~~~l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l 231 (1342)
+++ .++++|++++ ++++ ...++++|+++|++ +|+++++|++|+.+.+. ..+.. .+|++++|+||++
T Consensus 171 l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~----~~p~~~gaDiv~~S~sK~l 246 (427)
T 3i16_A 171 LKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDT----KEPTDVGADLIAGSLIKNI 246 (427)
T ss_dssp HHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSS----SCGGGGTCSEEEEETTSGG
T ss_pred hhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCcccccc----CCccccCCeEEEecCcccC
Confidence 984 3567777766 5555 44589999999999 99999999999766531 11222 3799999999999
Q ss_pred CC---CCeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee
Q psy13354 232 RG---PRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS 308 (1342)
Q Consensus 232 ~g---p~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~ 308 (1342)
+| +.||++++++++++.++........+....+...++.++ .+.+. ....++++..+++.++.+.|++.|+++.+
T Consensus 247 gg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~-l~gl~-~~~~r~~~~~~~a~~la~~L~~~g~~V~p 324 (427)
T 3i16_A 247 GGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSM-YQGLF-LAPHISMEALKGAILCSRIMELAGFEVMP 324 (427)
T ss_dssp GTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHTTCEEES
T ss_pred CCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCeecC
Confidence 66 677999999999998876322222221111101111112 22221 34467889999999999999999998743
Q ss_pred CCCCCe-----EEEEEccCCCCCHHHHHHHHH
Q psy13354 309 GGTKSH-----IILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 309 ~~~~~~-----~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
..++ ++.+.+.+......+++.+..
T Consensus 325 --~~~~~~~~~i~~i~l~~~~~~~~f~~~l~~ 354 (427)
T 3i16_A 325 --KYDEKRSDIIQSIKFNDKDKLIEFCKGIQT 354 (427)
T ss_dssp --CTTSCCSSSCEEEECSSHHHHHHHHHHHHH
T ss_pred --CCCCCCccEEEEEEECCHHHHHHHHHHHhh
Confidence 2444 778887643323344444443
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=206.45 Aligned_cols=290 Identities=16% Similarity=0.141 Sum_probs=194.4
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC
Q psy13354 69 KFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN 148 (1342)
Q Consensus 69 ~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~ 148 (1342)
....++.+++++.+++++|.++.+++++|||+|+++++.. +.+||+|+++...+.++ .........|...+++.++.+
T Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~ 108 (379)
T 3ke3_A 31 KAFQEVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSY-RWTQILEKGKFAKSSTVLTAE 108 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHH-HHHHHHHHHCCSSEEEEEECE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhH-HHHHHHHHhCCCCceEEEecc
Confidence 4445777778999999999987788888999999998855 47999999877544332 122233444543344444432
Q ss_pred C--------C-CCCCHHHHHHHHHhcCCeEEEEcC-CCCC-cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC
Q psy13354 149 K--------K-EKIDYKKVEYLAKKNKPKLIIAGA-SAYS-QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP 214 (1342)
Q Consensus 149 ~--------~-~~id~e~Le~~i~~~~~~liv~~~-s~~~-~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~ 214 (1342)
. . +.+|++++++.+.+.+++++++.. .+.. ...| +++|+++|++||+++|+|++|+ |.. ..
T Consensus 109 ~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~----~~ 183 (379)
T 3ke3_A 109 RTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCV----WL 183 (379)
T ss_dssp ESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTC----CC
T ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCc----cc
Confidence 1 1 258999999999654555555433 3333 4447 9999999999999999999987 532 11
Q ss_pred CCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc-CCcc--------------------ccCCcHHHHHHHHH
Q psy13354 215 NPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV-FPGI--------------------QGGPLMHVIAAKAV 271 (1342)
Q Consensus 215 ~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~-~~~~--------------------~~~~~~~~~~Aaa~ 271 (1342)
.... .+|++++|+||+++||.| |++++++++++.+.... .++. .++++.+.++++.+
T Consensus 184 ~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~a 263 (379)
T 3ke3_A 184 DMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRD 263 (379)
T ss_dssp CHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHH
T ss_pred cccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHH
Confidence 1111 379999999999988877 99999999888876421 1111 12556666666666
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC-CCe-EEEEEccCCCCCHHH-HHHHHHHCCceeeeccCCC
Q psy13354 272 AFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT-KSH-IILVDLRNKKITGKI-AESILESANIICNKNSIPN 348 (1342)
Q Consensus 272 al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~-~~~-~v~i~~~~~~~~~~~-~~~ll~~~GI~v~~~~~p~ 348 (1342)
++......+++++.+++.++++++++.|.+.|+++..++. ..+ +..+..++ .+. ....|.++||.+.++..+.
T Consensus 264 al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~L~~~Gi~v~~g~~~~ 339 (379)
T 3ke3_A 264 AILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTER----DDMHKGSAFAEAGLQIAAGVPLK 339 (379)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSC----HHHHSSHHHHHTTCCCEECCCCS
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCC----cchHHHHHHHHCCeEEeCCcccc
Confidence 6655554457888999999999999999999988755321 133 33333322 122 1445566799999876544
Q ss_pred CCCCcccccccccccccccccc
Q psy13354 349 DPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 349 ~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
... +...+.+|++++..++.+
T Consensus 340 ~~~-~~~~~~lRis~~~~~t~~ 360 (379)
T 3ke3_A 340 VGE-PDNFKTFRLGLFGLDKLT 360 (379)
T ss_dssp SCC-CTTCCEEEEECCSHHHHT
T ss_pred ccc-cCcCCEEEEeCCcCCCHH
Confidence 311 112467999998877643
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=222.77 Aligned_cols=231 Identities=17% Similarity=0.269 Sum_probs=181.2
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcC----------------CCCcEEEEEccCcccHHHHHHHHHHHhccCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKK----------------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGI 442 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~----------------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~ 442 (1342)
..|++||+|.+|++++|++.+++.|.+++... ..++++||+||+|+|||++|+++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~--- 103 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY--- 103 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC---
Confidence 46999999999999999999999999998751 14578999999999999999999999863
Q ss_pred CCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhh--------------cCccCCceEEEeccC
Q psy13354 443 DGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIY--------------APINARYKIYVIDEV 508 (1342)
Q Consensus 443 ~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~--------------~p~~~~~rvviIDE~ 508 (1342)
.+++++++.......+...+..... .+..+.+.||+|||+
T Consensus 104 --------------------------~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEi 157 (516)
T 1sxj_A 104 --------------------------DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEV 157 (516)
T ss_dssp --------------------------EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSG
T ss_pred --------------------------CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECC
Confidence 4667777655544433333322110 012256789999999
Q ss_pred ccCCHH---HHHHHHHhhcCCCCcEEEEEEeCCCC-CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHH
Q psy13354 509 HMLTHH---AFNAMLKTLEEPPKYIKFILATTEPQ-KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALN 584 (1342)
Q Consensus 509 ~~L~~~---~~~~Ll~~Le~p~~~~vlIl~t~~~~-kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~ 584 (1342)
|.+... ..+.|++++++.... +|++++... ...+++.+||..+.|.+++.+++.+++..++.++++.+++++++
T Consensus 158 d~l~~~~~~~l~~L~~~l~~~~~~--iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~ 235 (516)
T 1sxj_A 158 DGMSGGDRGGVGQLAQFCRKTSTP--LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVID 235 (516)
T ss_dssp GGCCTTSTTHHHHHHHHHHHCSSC--EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHH
T ss_pred CccchhhHHHHHHHHHHHHhcCCC--EEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 998653 347888888875444 455555433 34467899999999999999999999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhc---cCcHHHHHHHHHHHHccCh
Q psy13354 585 LIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLS---IIDQKYLIQILDALAEQDG 641 (1342)
Q Consensus 585 ~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~---~~~~~~if~l~dal~~~~~ 641 (1342)
.|++.++||+|.+++.|+.+.. ....|+.++|.+++. ......+|++++.+..++.
T Consensus 236 ~la~~s~GdiR~~i~~L~~~~~-~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~~~ 294 (516)
T 1sxj_A 236 RLIQTTRGDIRQVINLLSTIST-TTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQI 294 (516)
T ss_dssp HHHHHTTTCHHHHHHHHTHHHH-HSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBGGG
T ss_pred HHHHHcCCcHHHHHHHHHHHHh-cCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcCCc
Confidence 9999999999999999987653 556799999998886 3334588999999987653
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=212.49 Aligned_cols=316 Identities=12% Similarity=0.094 Sum_probs=197.6
Q ss_pred hccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 25 RQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 25 ~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
+....+.+.+++|++ +|.+.+++.+.+. ...|+..+...++++ ++++++|.+..++++ ||++|+
T Consensus 11 ~~~~~~~~~~~~~~~g~~p~v~~ai~~~~~---------~~~~~~~~~~~~l~~----~la~~~~~~~~i~~~-~g~~a~ 76 (359)
T 3pj0_A 11 QKTPYKLGGNGPRNVGVLTEALQNIDDNLE---------SDIYGNGAVIEDFET----KIAKILGKQSAVFFP-SGTMAQ 76 (359)
T ss_dssp HTCSEESSSSSCCBHHHHHHHTTTSCTTCB---------CCBTTBSHHHHHHHH----HHHHHHTCSEEEEES-CHHHHH
T ss_pred HhcchhhcCCCccccCCCHHHHHHHHhhcc---------cCcccCCHHHHHHHH----HHHHHhCCCcEEEeC-CHHHHH
Confidence 444556677788887 4447777555221 122334444455555 899999998776665 999999
Q ss_pred HHHHHHccCCCCE--EEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 103 QAVFFSVLNPGDT--IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 103 ~~al~al~~pGD~--Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
..++.+++.+||. |++.+..+.............|. ++++++. +++.+|+++++++ ..+++++++++++++
T Consensus 77 ~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~--~~~~v~~-~~~~~d~~~l~~~--~~~~~~v~~~~p~n~~~ 151 (359)
T 3pj0_A 77 QIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQQI--TPLLLGT-ANQLLTIDDIKSL--REPVSSVLIELPQREIG 151 (359)
T ss_dssp HHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHHCC--EEEECSC-TTSCCCHHHHHTC--SSCCSEEEEESSBGGGT
T ss_pred HHHHHHHHhcCCCcEEEEeccceeeehhcchHHHhcCc--eEEecCC-cCCCcCHHHHHhc--cCCceEEEEEecccCCC
Confidence 9999999888887 44333222211111111133455 5666665 4678999999988 446777777766544
Q ss_pred -cccC---HHHHHHHHHHcCCEEEEEcccchhhhhc-CCCCC-CCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhc
Q psy13354 179 -QYID---FERFYHIAKNINSYFMVDMAHYAGLIAA-GEYPN-PVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSA 252 (1342)
Q Consensus 179 -~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~-~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~ 252 (1342)
...+ +++|+++|++||++||+|++|..+.... +.... .....|+++.|+||+++++.||++++++++++.+...
T Consensus 152 G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~~l~~~~~~~ 231 (359)
T 3pj0_A 152 GQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAGNDDFVQEAKIW 231 (359)
T ss_dssp SBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcceEEEECCHHHHHHHHHH
Confidence 2234 5666999999999999999987554211 11110 1123588999999999777778999999998887642
Q ss_pred cCCcccc-CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCC-CCHHH
Q psy13354 253 VFPGIQG-GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKK-ITGKI 329 (1342)
Q Consensus 253 ~~~~~~~-~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~-~~~~~ 329 (1342)
...+..+ .......+++..++.+.. +..+++.++++++.+.|.+. |+++...+..++++|++++... .+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
T 3pj0_A 232 KRRYGGDLISLYPYILSADYYFEKRI-----GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSADEIGAI 306 (359)
T ss_dssp HHHTTCCCSCCHHHHHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHHHHHHH
T ss_pred HHHhCCCcchhHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccchhHHH
Confidence 2111111 111233333333443332 23455778889999999986 8887534567788888886532 12344
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+.+.++||.+.++..+..++ .+++|+++.....
T Consensus 307 l~~~l~~~GV~v~~g~~~~~~~----~~~~r~~i~~~~~ 341 (359)
T 3pj0_A 307 LTKIQDETGVGISGYLQEKSAD----VCAFEVSVGDAFA 341 (359)
T ss_dssp HHHHHHHHCEECCSCCEEEETT----EEEEEEECCTTGG
T ss_pred HHHHHHhcCcEecCCccccCCC----ceEEEEEecCccc
Confidence 4455555699999875544332 3568887765433
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=215.28 Aligned_cols=296 Identities=14% Similarity=0.107 Sum_probs=201.9
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc--
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL-- 110 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~-- 110 (1342)
++....++.+++++.+.+...+ +++.+ .+.......+..+++++++++++|.+ +.+++++||++|+..++.+++
T Consensus 27 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~ 103 (400)
T 3vax_A 27 AATTRVDQRVADIVLHWMTAEF--GNAGS-RHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPY 103 (400)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHH--SCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcc--CCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHh
Confidence 3345677889999998886443 23322 22223334566677888999999987 556667699999999999998
Q ss_pred --CCCC-EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHH
Q psy13354 111 --NPGD-TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 111 --~pGD-~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~ 185 (1342)
++|| +|+++...++++......+...|. +++.++.++++.+|++++++++++ +++++++++++++ ...++++
T Consensus 104 ~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~ 180 (400)
T 3vax_A 104 GERTGRRHIITSAIEHKAVLEPLEHLAGRGF--EVDFLTPGPSGRISVEGVMERLRP-DTLLVSLMHVNNETGVIQPVAE 180 (400)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTTTC--EEEEECCCTTCCCCHHHHHTTCCT-TEEEEECCSBCTTTCBBCCHHH
T ss_pred hccCCCCEEEECccccHhHHHHHHHHHhcCC--eEEEEccCCCCCcCHHHHHHhcCC-CceEEEEECCCCCceeeCcHHH
Confidence 8999 999888777766555544444566 566667777888999999998875 4577777666665 4558999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEE-Eech-hH---HHHhhccC-----
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFIL-MKKK-YK---KIINSAVF----- 254 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv-~~~~-l~---~~l~~~~~----- 254 (1342)
|.++|++||++||+|++|+.+...... ... +|++++|+||++ |+.| |+++ ++++ +. ..+.....
T Consensus 181 i~~la~~~~~~li~D~a~~~~~~~~~~--~~~--~d~~~~s~~K~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (400)
T 3vax_A 181 LAQQLRATPTYLHVDAAQGYGKVPGDL--TTP--IDMISISGHKIG-APKGVGALVTRRREEMDDERVPLEPIMFGGGQE 255 (400)
T ss_dssp HHHHHTTSSCEEEEECTTTTTTSGGGG--GSC--CSEEEEETGGGT-SCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTG
T ss_pred HHHHHHhcCCEEEEEhhhhcCCCCcCh--hhc--CcEEEEeHHHhC-CCCceEEEEEecchhccccccccCceecCCCce
Confidence 999999999999999999876542211 011 689999999976 7777 8888 7761 11 11211111
Q ss_pred -CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC--CeEEEEEccCCCCCHHHHH
Q psy13354 255 -PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK--SHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 255 -~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~--~~~v~i~~~~~~~~~~~~~ 331 (1342)
....++++.....++..++.... +++++..+++.++++++.+.|...|+.+..+... .+++++.++. ....++..
T Consensus 256 ~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 333 (400)
T 3vax_A 256 RKLRPGTLPVPLIMGLAEAAKIFE-AEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDHVVPHILNLSFED-VDAEAFLV 333 (400)
T ss_dssp GGTSCSCCCHHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTSBCTTEEEEECTT-CCHHHHHH
T ss_pred eeeecCCCCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcccCCCCEEEEEeCC-CCHHHHHH
Confidence 11234444555555555544333 3678889999999999999998557777543221 3567777664 22344555
Q ss_pred HHHHHCCceeeec
Q psy13354 332 SILESANIICNKN 344 (1342)
Q Consensus 332 ~ll~~~GI~v~~~ 344 (1342)
.+. +||.+.++
T Consensus 334 ~L~--~gi~v~~g 344 (400)
T 3vax_A 334 TLK--DLVAVATG 344 (400)
T ss_dssp HHH--HHHHHTTT
T ss_pred HHh--cCcEEEec
Confidence 555 69988764
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-22 Score=238.00 Aligned_cols=252 Identities=14% Similarity=0.117 Sum_probs=173.2
Q ss_pred hHHHHHHHHHHHHHcccCeeEEec-ccceEEEe----CCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCC
Q psy13354 805 DRILYKQAIRFYLENQLNLYLFQE-EVDDLIIK----TNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGR 879 (1342)
Q Consensus 805 d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~----~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~ 879 (1342)
++..+.+.+.+.+++ .+++|+.+ +|+++..+ ++. ..|.+.+| ++.||.||+||| |.+++..|+
T Consensus 107 ~~~~l~~~L~~~~~~-~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVlAtG---------~~s~p~~g~ 174 (401)
T 2gqf_A 107 GAEQIVEMLKSECDK-YGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIVATG---------GLSMPGLGA 174 (401)
T ss_dssp CTHHHHHHHHHHHHH-HTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEECCC---------CSSCGGGTC
T ss_pred CHHHHHHHHHHHHHH-CCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEECCC---------CccCCCCCC
Confidence 444455556666654 68999766 79999876 555 46888777 799999999999 888887777
Q ss_pred CCCcchHHHHHHHHH-cCCCccccccCCCcc-----------cccCcccccccee-----ecCCCCCCCcccccCCCCCC
Q psy13354 880 FGDFSTTSLAKRLKE-LQLSHGRLKTGTPPR-----------IDKRTIDFSKMEE-----QIGDFDPVPVFSVLGNINLH 942 (1342)
Q Consensus 880 ~g~~~s~~l~~~l~~-~g~~~~~~~~~~~~r-----------~~~~si~~~~~~~-----~~~d~~~~~~f~~~~~~~~~ 942 (1342)
+|+ +..+++ +|+++.+..++..|. +.+.++. ..+.. ..|| +.|||++++||.++
T Consensus 175 ~G~------g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~~~l~g~~~~-~~~~i~G~~~~~g~-~l~t~~g~sG~~~l- 245 (401)
T 2gqf_A 175 TPF------GYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLP-VTITALCGKSFYNQ-LLFTHRGISGPAVL- 245 (401)
T ss_dssp CSH------HHHHHHHTTCCEEEEEEESCCEECCGGGGGGGGGTTCEEE-EEEEETTSCEEEEE-EEECSSEEESHHHH-
T ss_pred ChH------HHHHHHHCCCCcccCcceeeceecCCchhhcccCCCeeee-eEEEEcCCceEEeC-EEEECCCccHHHHH-
Confidence 665 455544 788876665554322 2233321 11111 3478 99999999999877
Q ss_pred CCccccchhhcchhHHHHHHhhcccCCCCcc-ccc-ccc-CCCCCCcccccccCCCCCccceeEeecccccceeecCccc
Q psy13354 943 PKQLSCFITHTNEKTHNIIRSEFKNSPIFSG-KIE-SIG-PRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGIS 1019 (1342)
Q Consensus 943 ~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~-~~~-~~g-~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~~~~g~~ 1019 (1342)
++|+++... ....+|+.|.++. ++. ..- ++ .+|-++...+...+-.+.+..++...+. +...
T Consensus 246 --~~s~~~~~~-------~~~~i~~~p~~~~~~~~~~~~~~~-----~~~~~~~~l~~~lp~~~~~~~~~~~~~~-~~~~ 310 (401)
T 2gqf_A 246 --QISNYWQPT-------ESVEIDLLPNHNVEEEINQAKQSS-----PKQMLKTILVRLLPKKLVELWIEQGIVQ-DEVI 310 (401)
T ss_dssp --HHTTTCCTT-------CCEEEESCSSSCHHHHHHHHHHHC-----TTSBHHHHHTTTSCHHHHHHHHHTTSSC-CCBG
T ss_pred --HHHHHHhcC-------CEEEEECCCCCCHHHHHHHHhhhc-----ccccHHHHhhhhcCHHHHHHHHHHcCCC-CCch
Confidence 788887641 3455688888872 220 000 00 0111111111111222333334433343 4566
Q ss_pred cCCCHHHHHHHHHhcccc----------cceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHH-----
Q psy13354 1020 TSLPFEAQIELVQSIDGM----------KNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYE----- 1084 (1342)
Q Consensus 1020 ~~l~~~~q~~~~~~i~gl----------e~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~----- 1084 (1342)
.++++++..++.+.|+.+ ++|+||.+|+++++ |||+ |||||.+||||||||++|++|++
T Consensus 311 ~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~a~vt~GGv~~~~--~~~~----tmes~~~~gly~~GE~ldv~g~~GGynl 384 (401)
T 2gqf_A 311 ANISKVRVKNLVDFIHHWEFTPNGTEGYRTAEVTMGGVDTKV--ISSK----TMESNQVSGLYFIGEVLDVTGWLGGYNF 384 (401)
T ss_dssp GGCCHHHHHHHHHHHHCEEECCSEECCTTTCSEEEEEECGGG--BCTT----TCBBSSSTTEEECGGGBSCEECTTTHHH
T ss_pred hhCCHHHHHHHHHHHhcCEEEecccCCcceeEEeCCcccccc--CChh----hccccCCCCEEEEEEeEEeccCCCCHHH
Confidence 889999999999988655 99999999999999 9999 99999999999999999999988
Q ss_pred -HHHHHHHHHHHHHH
Q psy13354 1085 -EAASQGLLAGLNAA 1098 (1342)
Q Consensus 1085 -eA~~~G~~Ag~na~ 1098 (1342)
.||++|++||.+||
T Consensus 385 q~a~~sg~~ag~~~~ 399 (401)
T 2gqf_A 385 QWAWSSAYACALSIS 399 (401)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 49999999999986
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=212.17 Aligned_cols=309 Identities=12% Similarity=0.086 Sum_probs=194.6
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCC
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNP 112 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~p 112 (1342)
..+.++..+.+++++.+. +. +..+...|+..+...++++ ++++++|.+..++++ ||++|+..++.+++.+
T Consensus 16 ~~~~~p~~~~~~~~~~~~----~~-~~~~~~~y~~~~~~~~l~~----~la~~~~~~~~i~~~-~G~~a~~~al~~~~~~ 85 (357)
T 3lws_A 16 ISGHGKRNVGVLKTAFAA----VA-DEMASDQYGTGAIIEPFEQ----KFADVLGMDDAVFFP-SGTMAQQVALRIWSDE 85 (357)
T ss_dssp SSBSSCCBHHHHHHHHTT----SC-TTCBCEETTEETTHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHH----hh-cccCcccccCChHHHHHHH----HHHHHhCCCcEEEec-CcHHHHHHHHHHHhhc
Confidence 345555555544443332 21 1122344555666667776 888899988776665 9999999999999988
Q ss_pred CC--EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cc-c---CHH
Q psy13354 113 GD--TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QY-I---DFE 184 (1342)
Q Consensus 113 GD--~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~-~---~l~ 184 (1342)
|| .|++.+..+.............|. ++++++. +++.+|+++++++. . +++++++++++| +. . +++
T Consensus 86 gd~~~vi~~~~~~~~~~~~~~~~~~~g~--~~~~v~~-~~~~~d~~~l~~~~--~-~~~v~~~~p~np~~G~~~~~~~l~ 159 (357)
T 3lws_A 86 TDNRTVAYHPLCHLEIHEQDGLKELHPI--ETILVGA-ADRLMTLDEIKALP--D-IACLLLELPQREIGGVAPAFSELE 159 (357)
T ss_dssp HTCCEEEECTTCHHHHSSTTHHHHHSSC--EEEECSC-TTSCCCHHHHHTCC--S-CSEEEEESSBGGGTSBCCCHHHHH
T ss_pred CCCcEEEecccceeeeeccchhhhccCc--EEEEecC-CCCCcCHHHHhcCc--C-cceEEEEcccccCCceeCCHHHHH
Confidence 88 666554333322222222334455 5666664 45679999999872 2 667777776654 22 2 599
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhc-CCCCC-CCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccC-C
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAA-GEYPN-PVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGG-P 261 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~-~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~-~ 261 (1342)
+|+++|++||++||+|++|..+.... +.... .....|++++|+||+++||.||++++++++++.+......+..+. .
T Consensus 160 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (357)
T 3lws_A 160 TISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQTARIWKRRYGGDLIS 239 (357)
T ss_dssp HHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCceEEEEcCHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999987332211 11110 112358889999999988888999999988888764321111111 1
Q ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCC-CCHHHHHHHHHHCCc
Q psy13354 262 LMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKK-ITGKIAESILESANI 339 (1342)
Q Consensus 262 ~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~-~~~~~~~~ll~~~GI 339 (1342)
..+..+++..++.+... ..+++.++++++.+.|.+. |+++...++.++++|++++... .+.+.+...+.++||
T Consensus 240 ~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 314 (357)
T 3lws_A 240 LYPYIVSADYYYELRKD-----RMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGL 314 (357)
T ss_dssp CHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCE
T ss_pred chHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCe
Confidence 12333333334433222 2344677888999999986 7887444567889999987642 112334455556699
Q ss_pred eeeeccCCCCCCCccccccccccccccc
Q psy13354 340 ICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 340 ~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
.+.++..+. ++ ..++|+++...+
T Consensus 315 ~v~~g~~~~-~~----~~~~r~~i~~~~ 337 (357)
T 3lws_A 315 GFVGYLVDK-DG----YCSTEISVGDAY 337 (357)
T ss_dssp ESCSCCEEC-SS----EEEEEEEBCTTG
T ss_pred EEecccccC-CC----ceEEEEEecchh
Confidence 999875443 22 357898877644
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=206.10 Aligned_cols=239 Identities=20% Similarity=0.292 Sum_probs=172.8
Q ss_pred HHHhhccCCCC-ccccccchhhHHH---HHHHHHcCCCC-cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 379 VVLARKYRPSN-FNTLIGQNHISKS---LINALDKKRLH-HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 379 ~~l~~k~~p~~-f~~lvGq~~~~~~---L~~~l~~~~~~-~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
+.+..+++|.. |++++||+.+++. +.+.+..+..+ +++||+||||+|||++|+.+++.+.+..+. ....|
T Consensus 31 l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-----~~~~~ 105 (368)
T 3uk6_A 31 LGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-----TAIAG 105 (368)
T ss_dssp CCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-----EEEEG
T ss_pred cCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-----ccccc
Confidence 34668899998 9999999999765 56677777654 789999999999999999999999753211 11112
Q ss_pred CCCcchh------------------------------hhc--cCCCccEEEE-ccCCCcCHHHHHHHHHHHhhc-CccCC
Q psy13354 454 GKCSVCV------------------------------KID--NGCFMDYIEM-DAASTRGINEMAQLLEQTIYA-PINAR 499 (1342)
Q Consensus 454 ~~~~~~~------------------------------~~~--~~~~~d~~~i-~~~~~~~~~~i~~ii~~~~~~-p~~~~ 499 (1342)
..+..+. .++ .....++..+ ..........+++.+..+... ...+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~ 185 (368)
T 3uk6_A 106 SEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGK 185 (368)
T ss_dssp GGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcc
Confidence 1110000 000 0000000000 000111134566666554432 11222
Q ss_pred ----ceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC------------CCCCChHHHhccEEEEEEcCCCHHHH
Q psy13354 500 ----YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT------------EPQKIPITVLSRCIQFNLKKMLHHDI 563 (1342)
Q Consensus 500 ----~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~------------~~~kl~~~L~sR~~~i~~~~l~~~el 563 (1342)
+.||+|||++.++.+.++.|++.+++++..++ +++++ .+..++++|.+||..+.|++++.+++
T Consensus 186 ~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~-ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~ 264 (368)
T 3uk6_A 186 AEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVL-IMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDT 264 (368)
T ss_dssp ---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCEE-EEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHH
T ss_pred ccccCceEEEhhccccChHHHHHHHHHhhCcCCCee-eeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHH
Confidence 35999999999999999999999999877764 44444 25678899999999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHhcC-CcHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 564 VNNLCYILNKENIKFETSALNLIATGAQ-GSMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 564 ~~~l~~~~~~~g~~i~~~al~~La~~~~-g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
..++..++...+..+++++++.+++.+. ||+|.+.++++++..++ ...||.++|++++..
T Consensus 265 ~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 265 KQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998 99999999999987765 346999999998865
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=206.89 Aligned_cols=295 Identities=16% Similarity=0.135 Sum_probs=190.6
Q ss_pred cCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccC-CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHH
Q psy13354 27 NNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYG-GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAV 105 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~-~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~a 105 (1342)
.+.+.+..+.+.+++.+.+++.+.+.... |. ..+...++++ .+++++|.+++++++ ||++|+..+
T Consensus 22 ~~~~~l~~~~p~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~----~la~~~~~~~~i~~~-~gt~al~~~ 87 (391)
T 3dr4_A 22 SDLPRISVAAPRLDGNERDYVLECMDTTW---------ISSVGRFIVEFEK----AFADYCGVKHAIACN-NGTTALHLA 87 (391)
T ss_dssp ------CCCCCCCCSSHHHHHHHHHHHTC---------CSSCSHHHHHHHH----HHHHHHTCSEEEEES-SHHHHHHHH
T ss_pred CCCceeccCCCCCCHHHHHHHHHHHHcCC---------ccCCChHHHHHHH----HHHHHhCCCcEEEeC-CHHHHHHHH
Confidence 34456666777788889999888775321 22 3444455555 888899988666655 999999999
Q ss_pred HHHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCH
Q psy13354 106 FFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183 (1342)
Q Consensus 106 l~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l 183 (1342)
+.++ +.+||+|+++...+++ ....+...|. +++.++.+ +++.+|++++++.+++ +++++++++ ..+...++
T Consensus 88 l~~~~~~~gd~vl~~~~~~~~---~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~n-~tG~~~~~ 160 (391)
T 3dr4_A 88 LVAMGIGPGDEVIVPSLTYIA---SANSVTYCGA--TPVLVDNDPRTFNLDAAKLEALITP-RTKAIMPVH-LYGQICDM 160 (391)
T ss_dssp HHHHTCCTTCEEEEESSSCTH---HHHHHHHTTC--EEEEECBCTTTCSBCGGGSGGGCCT-TEEEECCBC-GGGCCCCH
T ss_pred HHHcCCCCcCEEEECCCchHH---HHHHHHHCCC--EEEEEecCccccCcCHHHHHHhcCC-CceEEEEEC-CCCChhhH
Confidence 9999 9999999987765554 4445566676 55555666 5688999999988865 445555422 22255699
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCeeEEEEec-hhHHHHhhccCCcc---
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRGGFILMKK-KYKKIINSAVFPGI--- 257 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~GG~iv~~~-~l~~~l~~~~~~~~--- 257 (1342)
++|+++|++||++||+|++|+.|....+.....+ .|++++||+ |+++++.||++++++ ++.+.+......+.
T Consensus 161 ~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~--~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~ 238 (391)
T 3dr4_A 161 DPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL--GDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPN 238 (391)
T ss_dssp HHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS--SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTT
T ss_pred HHHHHHHHHcCCEEEEECcccccceECCeeeccc--CCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999998766443322222 367777755 999766678888876 46555543221110
Q ss_pred ---------ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeC--C----CCCeEEEEEccC
Q psy13354 258 ---------QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSG--G----TKSHIILVDLRN 322 (1342)
Q Consensus 258 ---------~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~--~----~~~~~v~i~~~~ 322 (1342)
.+....+..+++..... ..+++..++..++++++.+.|.+.|+.+... + ...+++++.+++
T Consensus 239 ~~~~~~~~g~~~~~~~l~aa~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 314 (391)
T 3dr4_A 239 RRYWFPIVGFNYRMTNIQAAIGLAQL----ERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGE 314 (391)
T ss_dssp STTCCSSCCCBCBCCHHHHHHHHHHH----HTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECS
T ss_pred CcccccccccccCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECC
Confidence 01222333333333222 2556677888899999999999888776543 1 122345666654
Q ss_pred C-CCCHHHHHHHHHHCCceeeeccCCC
Q psy13354 323 K-KITGKIAESILESANIICNKNSIPN 348 (1342)
Q Consensus 323 ~-~~~~~~~~~ll~~~GI~v~~~~~p~ 348 (1342)
. +.+.+.+...|.++||.+.++..|.
T Consensus 315 ~~~~~~~~l~~~L~~~GI~v~~~~~p~ 341 (391)
T 3dr4_A 315 GLSTTRDQVIKDLDALGIESRPVFHPM 341 (391)
T ss_dssp SCSSCHHHHHHHHHHTTCCCEECCCCG
T ss_pred ccchhHHHHHHHHHHCCCceeecCCcc
Confidence 1 2234444444555699999876543
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-18 Score=206.77 Aligned_cols=309 Identities=12% Similarity=0.073 Sum_probs=195.6
Q ss_pred CceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH--hC-CC-CceEecCCHHHH
Q psy13354 28 NNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI--FN-AE-AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~--~g-~~-~~vi~~~sGs~A 101 (1342)
+.+.+..+.+. .+|.+.+++.+.+.. .... .....|+...+..++++ .++++ .| .+ +.+++++|++++
T Consensus 34 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~-~~~~~y~~~~g~~~lr~----~la~~l~~g~~~~~~v~~~~G~~~a 107 (400)
T 3asa_A 34 TVINLSIGDTTQPLNASVAEAFASSIAR-LSSP-TTCRGYGPDFGLPALRQ----KLSEDFYRGFVDAKEIFISDGAKVD 107 (400)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHHHH-HTSS-SCCCCCCCTTCCHHHHH----HHHHTTSTTSSCGGGEEEESCHHHH
T ss_pred ceEeccCCCCCCCCCHHHHHHHHHHHhc-cccc-ccccCCCCCCCCHHHHH----HHHHHHHcCCCCHHHEEEccChHHH
Confidence 55777777643 456689998887753 2111 11122333344556666 66666 46 43 556666688889
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCce-eEEEEecCCC--CCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKW-FNSICYGLNK--KEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~-~~~v~~~~~~--~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
+..++ .++.+||+|++..+.+++ ....+...|.. +..+ +.++ .+..|++. . .+++++++++++||
T Consensus 108 l~~~~-~~~~~gd~Vl~~~p~y~~---~~~~~~~~g~~~~~~~--~~~~~~~~~~~l~~---~---~~~~~v~l~~p~np 175 (400)
T 3asa_A 108 LFRLL-SFFGPNQTVAIQDPSYPA---YLDIARLTGAKEIIAL--PCLQENAFFPEFPE---D---THIDILCLCSPNNP 175 (400)
T ss_dssp HHHHH-HHHCSSCEEEEEESCCHH---HHHHHHHTTCSEEEEE--ECCGGGTTCCCCCT---T---CCCSEEEEESSCTT
T ss_pred HHHHH-HHcCCCCEEEECCCCcHH---HHHHHHHcCCcceEec--ccchhcCcccChhh---c---cCccEEEEeCCCCC
Confidence 98865 456899999987755544 34445566764 4444 4443 23334322 1 34667666666666
Q ss_pred -c-cc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CCC---CcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 -Q-YI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VPF---ADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 -~-~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~~---~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
+ .. ++++|+++|+++|++||+||+|......+...... ++. .+++++|+||++ |+.| ||+++++++
T Consensus 176 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~GlriG~~~~~~~~ 254 (400)
T 3asa_A 176 TGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPL-GFAGIRLGWTVIPQEL 254 (400)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGG-TTTTCCCEEEECCTTC
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhc-CCcchheeEEeeChhh
Confidence 2 22 47889999999999999999998433322111111 111 248899999999 6556 999999887
Q ss_pred -------HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEE
Q psy13354 246 -------KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILV 318 (1342)
Q Consensus 246 -------~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i 318 (1342)
++.+........+++++.+.+.++..++... +.++.++++.++++++.+.|.+.|+++.. +..++++|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~ 330 (400)
T 3asa_A 255 TYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLLRKALLATGFEVFG-GEHAPYLWV 330 (400)
T ss_dssp BCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHHTTCEEEE-CSSSSEEEE
T ss_pred ccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHCCCeeeC-CCCceEEEE
Confidence 5555432222223345566666655555442 45567888999999999999998888754 345788999
Q ss_pred E-ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccc
Q psy13354 319 D-LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGS 363 (1342)
Q Consensus 319 ~-~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~ 363 (1342)
. ++....+.+++..+++++||.+.++..+... ..+++|+++
T Consensus 331 ~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~----~~~~iRis~ 372 (400)
T 3asa_A 331 KPTQANISDRDLFDFFLREYHIAITPGIGFGRS----GSGFVRFSS 372 (400)
T ss_dssp ECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGG----GTTCEEEEC
T ss_pred eccCCCCCHHHHHHHHHHhCCEEEeChhHhCCC----CCCEEEEEe
Confidence 9 7643334467788887779999987544321 135799984
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-18 Score=210.22 Aligned_cols=293 Identities=17% Similarity=0.116 Sum_probs=195.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccC--------------CCCEEEEeeccCCccc
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLN--------------PGDTIMGMSLQEGGHL 127 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~--------------pGD~Vlv~~~~~~~~~ 127 (1342)
|...+...++|+++.+++++++|.+ ...++++|||+|+..++.++.. +++.|+++.. .|.
T Consensus 127 ~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~---~H~ 203 (511)
T 3vp6_A 127 YEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQ---SHY 203 (511)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETT---SCT
T ss_pred cccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCC---chH
Confidence 4567788899999999999999987 3556666999999999887754 5678886664 455
Q ss_pred hhhHHhhhCCcee-EEEEecCCCCCCCCHHHHHHHHHhcC-----CeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEE
Q psy13354 128 THGMMLNMSGKWF-NSICYGLNKKEKIDYKKVEYLAKKNK-----PKLIIAGASAYS--QYIDFERFYHIAKNINSYFMV 199 (1342)
Q Consensus 128 s~~~~~~~~g~~~-~~v~~~~~~~~~id~e~Le~~i~~~~-----~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIv 199 (1342)
+....+...|.+. +++.++.++++.+|+++|++++.+.. +++++++.++++ ...|+++|+++|++||+|+++
T Consensus 204 s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhv 283 (511)
T 3vp6_A 204 SIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHV 283 (511)
T ss_dssp HHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEE
Confidence 5666667777633 45555777789999999999997642 566666554444 556999999999999999999
Q ss_pred EcccchhhhhcCCCCCCC---CCCcEEEecCCccCCCCCe-eEEEEec-hhHHHHhhccCCccccC--------------
Q psy13354 200 DMAHYAGLIAAGEYPNPV---PFADFITSTTHKSLRGPRG-GFILMKK-KYKKIINSAVFPGIQGG-------------- 260 (1342)
Q Consensus 200 Dea~~~g~~~~~~~~~~l---~~~Divv~S~sK~l~gp~G-G~iv~~~-~l~~~l~~~~~~~~~~~-------------- 260 (1342)
|++|+.+.+....+...+ ..+|++++++|||+++|.| |+++.++ .+..........+....
T Consensus 284 D~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 363 (511)
T 3vp6_A 284 DAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKA 363 (511)
T ss_dssp EETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGS
T ss_pred EccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCC
Confidence 999998776443222222 2469999999999988877 7777765 45554432222222110
Q ss_pred ---CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-CCCCeEEEEEccCCCC----------
Q psy13354 261 ---PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSG-GTKSHIILVDLRNKKI---------- 325 (1342)
Q Consensus 261 ---~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-~~~~~~v~i~~~~~~~---------- 325 (1342)
+......++..++..+..++++++.++..++++++.+.|++. |+++..+ ++...++.+.+.+...
T Consensus 364 ~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~ 443 (511)
T 3vp6_A 364 IQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRR 443 (511)
T ss_dssp SCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHH
Confidence 000123344445555555688889999999999999999986 8988762 2334444444432211
Q ss_pred ------CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 326 ------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 326 ------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+.++...++++ |+.+... .|. ..+ .+++|++++..
T Consensus 444 ~~l~~~~~~l~~~L~~~-G~~~~~~-~~~-~~~---~~~lRi~~~~~ 484 (511)
T 3vp6_A 444 EKLHKVAPKIKALMMES-GTTMVGY-QPQ-GDK---ANFFRMVISNP 484 (511)
T ss_dssp HHHHHHHHHHHHHHHHH-TSCEEEE-EEE-TTE---EEEEEECCCCT
T ss_pred HHHHHHHHHHHHHHHhc-CCEEEEE-EEe-CCc---eEEEEEEecCC
Confidence 12456666666 6544331 111 111 24699999433
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-18 Score=202.14 Aligned_cols=288 Identities=12% Similarity=0.061 Sum_probs=185.4
Q ss_pred CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCC
Q psy13354 36 ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGD 114 (1342)
Q Consensus 36 ~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD 114 (1342)
...+++.+++++.+.+.+.| .. ..++...+ +++.+++++|.+.+++++ ||++|+..++.++ +.+||
T Consensus 7 ~p~~~~~v~~a~~~~~~~~~----~~----~~g~~~~~----l~~~la~~~~~~~v~~~~-ggt~al~~~~~~l~~~~gd 73 (394)
T 1o69_A 7 PPHMGGNELKYIEEVFKSNY----IA----PLGEFVNR----FEQSVKDYSKSENALALN-SATAALHLALRVAGVKQDD 73 (394)
T ss_dssp -----CCHHHHHHHHHHHTT----TS----CTTHHHHH----HHHHHHHHHCCSEEEEES-CHHHHHHHHHHHTTCCTTC
T ss_pred CCCCCHHHHHHHHHHHHcCC----cc----CCChHHHH----HHHHHHHHhCCCcEEEeC-CHHHHHHHHHHHcCCCCCC
Confidence 34566678888888875322 11 01222344 445888889986655555 9999999999999 99999
Q ss_pred EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCCCcccCHHHHHHHHHH
Q psy13354 115 TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAYSQYIDFERFYHIAKN 192 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~~~~~~l~~I~~la~~ 192 (1342)
+|+++.+.++++. ..+...|. +++.++.+++|.+|++++++.+++. ++++|++++ ..+...++++|.++|++
T Consensus 74 ~Vl~~~~~~~~~~---~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~-~~G~~~~l~~i~~l~~~ 147 (394)
T 1o69_A 74 IVLASSFTFIASV---APICYLKA--KPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH-LYGNAAKMDEIVEICKE 147 (394)
T ss_dssp EEEEESSSCGGGT---HHHHHTTC--EEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC-GGGCCCCHHHHHHHHHH
T ss_pred EEEECCCccHHHH---HHHHHcCC--EEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC-CCCChhhHHHHHHHHHH
Confidence 9998886666554 34455666 5555566677889999999999863 456666654 33466799999999999
Q ss_pred cCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEe-chhHHHHhhccCCccccCC----------
Q psy13354 193 INSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK-KKYKKIINSAVFPGIQGGP---------- 261 (1342)
Q Consensus 193 ~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~-~~l~~~l~~~~~~~~~~~~---------- 261 (1342)
+|++||+|++|+.|....+.....+..+|+.++|.+|+++++.+|+++++ +++++.+......+....+
T Consensus 148 ~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~ 227 (394)
T 1o69_A 148 NDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYN 227 (394)
T ss_dssp TTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCB
T ss_pred cCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcc
Confidence 99999999999876543332222223357777788999955555999995 6877777653222211100
Q ss_pred --cHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC----CCeEEEEEccCC------------
Q psy13354 262 --LMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT----KSHIILVDLRNK------------ 323 (1342)
Q Consensus 262 --~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~----~~~~v~i~~~~~------------ 323 (1342)
..+..++++.+ . + +.+++..+++.++++++.+.|.+. +++..... ..+++++.++..
T Consensus 228 ~~~~~~~aa~~l~--~-l-~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 302 (394)
T 1o69_A 228 YRLSNVLGAIGVA--Q-M-EVLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDIN 302 (394)
T ss_dssp CBCCHHHHHHHHH--H-H-TTHHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEE
T ss_pred cCcCHHHHHHHHH--H-H-HHHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhcccccccccc
Confidence 12223332222 2 2 256667889999999999999887 65533211 122567776532
Q ss_pred --------CCCHHHHHHHHHHCCceeeeccCC
Q psy13354 324 --------KITGKIAESILESANIICNKNSIP 347 (1342)
Q Consensus 324 --------~~~~~~~~~ll~~~GI~v~~~~~p 347 (1342)
+.+.+.+...|.++||.+++++.|
T Consensus 303 ~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~ 334 (394)
T 1o69_A 303 ISQKNITLHPKISKLIEDLKNKQIETRPLWKA 334 (394)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCC
T ss_pred ccccccccccCHHHHHHHHHHcCCcccccCCc
Confidence 112344444555679999877544
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-18 Score=204.54 Aligned_cols=288 Identities=14% Similarity=0.149 Sum_probs=192.6
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~a 108 (1342)
.|++.. ..+++.+++++.+.+.+.. +...+...++++ .+++++|.+++++++ ||++|+..++.+
T Consensus 10 ~i~~~~--p~~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~----~la~~~~~~~~~~~~-~gt~al~~~~~~ 73 (393)
T 1mdo_A 10 FLPFSR--PAMGAEELAAVKTVLDSGW---------ITTGPKNQELEA----AFCRLTGNQYAVAVS-SATAGMHIALMA 73 (393)
T ss_dssp CBCSCC--CCCCHHHHHHHHHHHHHTC---------CSSSHHHHHHHH----HHHHHHCCSEEEEES-CHHHHHHHHHHH
T ss_pred ccccCC--CCCCHHHHHHHHHHHhcCC---------cCCChHHHHHHH----HHHHHhCCCcEEEec-ChHHHHHHHHHH
Confidence 455544 4477888899888775321 122344445555 888899988665555 999999999999
Q ss_pred c-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHH
Q psy13354 109 V-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186 (1342)
Q Consensus 109 l-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I 186 (1342)
+ +.+||+|+++...+++ ....+...|. +++.++.++ ++.+|++++++.+++ +++++++++ ..+...++++|
T Consensus 74 ~~~~~gd~Vl~~~~~~~~---~~~~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~-~~G~~~~~~~i 146 (393)
T 1mdo_A 74 LGIGEGDEVITPSMTWVS---TLNMIVLLGA--NPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPVH-YAGAPADLDAI 146 (393)
T ss_dssp TTCCTTCEEEEESSSCHH---HHHHHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBC-GGGCCCCHHHH
T ss_pred cCCCCCCEEEeCCCccHh---HHHHHHHCCC--EEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEeC-CCCCcCCHHHH
Confidence 9 9999999987755544 4445566777 455556554 477999999998875 456666643 23355689999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCeeEEEEe-chhHHHHhhccCCc-------
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRGGFILMK-KKYKKIINSAVFPG------- 256 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~GG~iv~~-~~l~~~l~~~~~~~------- 256 (1342)
.++|+++|++||+|++|+.|....+..... .|++++|+| |+++++.||+++++ +++++.+.......
T Consensus 147 ~~l~~~~~~~li~D~a~~~g~~~~~~~~~~---~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 223 (393)
T 1mdo_A 147 YALGERYGIPVIEDAAHATGTSYKGRHIGA---RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWD 223 (393)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEETTEETTS---SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC---
T ss_pred HHHHHHcCCeEEEECccccCCeECCeecCC---CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchh
Confidence 999999999999999998765433221111 699999999 99976677999997 67777765432211
Q ss_pred --------cc-----c--CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC-----CCCeEE
Q psy13354 257 --------IQ-----G--GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG-----TKSHII 316 (1342)
Q Consensus 257 --------~~-----~--~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~-----~~~~~v 316 (1342)
.+ + ....+..++++....+ .+++..++..++++++.+.|.+.++++...+ ...+++
T Consensus 224 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 299 (393)
T 1mdo_A 224 RQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ----KLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLF 299 (393)
T ss_dssp --------CCEESSCCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCE
T ss_pred hhcccccccccccccCccCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEE
Confidence 10 1 1123333333333222 4556677788899999999998877664222 344678
Q ss_pred EEEccC---CCCCHHHHHHHHHHCCceeeeccCC
Q psy13354 317 LVDLRN---KKITGKIAESILESANIICNKNSIP 347 (1342)
Q Consensus 317 ~i~~~~---~~~~~~~~~~ll~~~GI~v~~~~~p 347 (1342)
|+.++. .....++...+. ++||.+.++..|
T Consensus 300 ~v~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~ 332 (393)
T 1mdo_A 300 IIRVDEARCGITRDALMASLK-TKGIGTGLHFRA 332 (393)
T ss_dssp EEECCHHHHSSCHHHHHHHHH-HTTBCCBCCCCC
T ss_pred EEEecccccccCHHHHHHHHH-hCCCCcccccCc
Confidence 888863 222334555554 569999876544
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.79 E-value=9e-18 Score=207.57 Aligned_cols=318 Identities=12% Similarity=0.085 Sum_probs=212.1
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----Cce--EecCCHHHHHHHHHHHcc
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AAN--VQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~v--i~~~sGs~A~~~al~al~ 110 (1342)
.+.+|.+.+++.+.+...+ . .+...+...++++.+++++++++|.+ ... ++++||++|+..++.++.
T Consensus 66 ~~~~~~v~~~l~~~~~~~~----~---~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~ 138 (502)
T 3hbx_A 66 TWMEPECDKLIMSSINKNY----V---DMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFK 138 (502)
T ss_dssp CCCCHHHHHHHHHTTTCBT----T---CTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccCC----C---ChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHH
Confidence 4567778888777664221 1 12334557799999999999999987 222 235599999999988886
Q ss_pred CC--------CC-----EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCC-CCCCHHHHHHHHHhcCCeEEEEcCCC
Q psy13354 111 NP--------GD-----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASA 176 (1342)
Q Consensus 111 ~p--------GD-----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~-~~id~e~Le~~i~~~~~~liv~~~s~ 176 (1342)
.+ |+ +|+++. +.|.+....+...|+.+..+ +.+++ +.+|++++++++.+. +++|+++.++
T Consensus 139 ~~~~~~~~~~G~~~~~~~vi~~~---~~h~s~~~~~~~~G~~~~~v--~~~~~~~~~d~~~l~~~i~~~-t~~v~~~~~~ 212 (502)
T 3hbx_A 139 RKWQNKRKAEGKPVDKPNIVTGA---NVQVCWEKFARYFEVELKEV--KLSEGYYVMDPQQAVDMVDEN-TICVAAILGS 212 (502)
T ss_dssp HHHHHHHHHTTCCCSCCEEEEET---TCCHHHHHHHHHTTCEEEEE--CCBTTBCSCCHHHHHHHCCTT-EEEEEEEBSC
T ss_pred HHHhHHHHhcCCCCCCcEEEEcC---CchHHHHHHHHHcCceeEEE--ecCCCcCcCCHHHHHHHHhhC-CEEEEEecCC
Confidence 55 76 888665 45566666677788855554 55544 899999999998764 4555554444
Q ss_pred CC--cccCHHHHHHHHHHc------CCEEEEEcccchhhh--hcCCCCCC--CCCCcEEEecCCccCCCCCe-eEEEEec
Q psy13354 177 YS--QYIDFERFYHIAKNI------NSYFMVDMAHYAGLI--AAGEYPNP--VPFADFITSTTHKSLRGPRG-GFILMKK 243 (1342)
Q Consensus 177 ~~--~~~~l~~I~~la~~~------gi~LIvDea~~~g~~--~~~~~~~~--l~~~Divv~S~sK~l~gp~G-G~iv~~~ 243 (1342)
++ ...|+++|.++|+++ |+||++|+||+.+.. ........ ...+|++++++||++.+|.| |+++.++
T Consensus 213 n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~ 292 (502)
T 3hbx_A 213 TLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRN 292 (502)
T ss_dssp TTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESS
T ss_pred CCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeC
Confidence 44 555999999999999 999999999985542 11111111 23579999999999978877 8777764
Q ss_pred -hhHHHHhhccCCccc---------cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCC
Q psy13354 244 -KYKKIINSAVFPGIQ---------GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTK 312 (1342)
Q Consensus 244 -~l~~~l~~~~~~~~~---------~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~ 312 (1342)
+...........+.. ++.......++.+++.....+++..+.++..++++++.+.|.+.+ +++..+.+.
T Consensus 293 ~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 372 (502)
T 3hbx_A 293 KEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEG 372 (502)
T ss_dssp GGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSS
T ss_pred HHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 332111111111111 111122344455555544445778889999999999999999986 888653246
Q ss_pred CeEEEEEccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 313 SHIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 313 ~~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.+++.+.+++. ..+...+...|.++||.+.....|....+ ...+|++++..++.+
T Consensus 373 ~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~---~~~lRisv~~~~t~e 428 (502)
T 3hbx_A 373 VPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQH---ITVLRVVIREDFSRT 428 (502)
T ss_dssp SSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTT---CEEEEEECCTTCCHH
T ss_pred ceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCC---ceEEEEEeCCCCCHH
Confidence 77888888653 23443444455566999977665554332 457999999877653
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-18 Score=207.67 Aligned_cols=287 Identities=12% Similarity=0.107 Sum_probs=193.3
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc----cCCCC-----EEEEeeccCCccchhhHHhhhCCc
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV----LNPGD-----TIMGMSLQEGGHLTHGMMLNMSGK 138 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al----~~pGD-----~Vlv~~~~~~~~~s~~~~~~~~g~ 138 (1342)
..+..++++++++++++++|.+..++++++|++|+..++.++ ..+|| +|+++...|+. ....+...|.
T Consensus 102 ~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~---~~~~~~~~G~ 178 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGS---NPATASMAGY 178 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTH---HHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChh---hHHHHHHCCC
Confidence 566778889999999999999877767779999999876665 35887 99987755544 3444566677
Q ss_pred eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCCc-c-cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC
Q psy13354 139 WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQ-Y-IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP 216 (1342)
Q Consensus 139 ~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~~-~-~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~ 216 (1342)
+++.++.+++|.+|+++++++++++ +++|+++++|+.+ . .++++|+++|++||++||+|++|+.+..+. ..+
T Consensus 179 --~vv~v~~~~~~~~d~~~L~~~i~~~-t~~v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~---~~~ 252 (474)
T 1wyu_B 179 --QVREIPSGPEGEVDLEALKRELGPH-VAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGW---ARP 252 (474)
T ss_dssp --EEEEECBCTTSSBCHHHHHHHCSTT-EEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTT---CCH
T ss_pred --EEEEecCCCCCCcCHHHHHHhhCCC-ceEEEEECCCCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccC---CCc
Confidence 5555677778999999999998754 5666666666554 4 489999999999999999999997665421 111
Q ss_pred CC-CCcEEEecCCccCCCCC-----e-eEEEEechhHHHHhhcc------------------CCccccCCcHHHHHHHHH
Q psy13354 217 VP-FADFITSTTHKSLRGPR-----G-GFILMKKKYKKIINSAV------------------FPGIQGGPLMHVIAAKAV 271 (1342)
Q Consensus 217 l~-~~Divv~S~sK~l~gp~-----G-G~iv~~~~l~~~l~~~~------------------~~~~~~~~~~~~~~Aaa~ 271 (1342)
.. .+|++++|+||+|++|. | |++++++++++.+.... .....++.+...+.++..
T Consensus 253 ~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~ 332 (474)
T 1wyu_B 253 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWA 332 (474)
T ss_dssp HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHH
T ss_pred ccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHH
Confidence 11 36999999999996653 3 99999998876654100 000111223333333333
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCC
Q psy13354 272 AFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPE 351 (1342)
Q Consensus 272 al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~ 351 (1342)
.+.....+++++..+++.++++++.+.|.+.|+++..++...+.+++.++......++...++++ ||.+....+|..
T Consensus 333 ~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~~~~~~~~~~-- 409 (474)
T 1wyu_B 333 YIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLLEL-GFHPPTVYFPLI-- 409 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHT-TCCCCEESCSTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCcceEEEEEcCCCCCHHHHHHHHHHC-Cccccccccccc--
Confidence 33333344677778999999999999999888776332222222556663222344566666655 998644333321
Q ss_pred Cccccccccccccccccc
Q psy13354 352 KPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 352 ~~~~~~~lRi~~~~~~t~ 369 (1342)
..+.+|++++..++.
T Consensus 410 ---~~~~lRis~~~~~t~ 424 (474)
T 1wyu_B 410 ---VKEALMVEPTETEAK 424 (474)
T ss_dssp ---STTCEEECCCTTSCH
T ss_pred ---cCCEEEEEeecCCCH
Confidence 135699999876553
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=205.31 Aligned_cols=304 Identities=16% Similarity=0.138 Sum_probs=194.7
Q ss_pred cCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc---cC
Q psy13354 35 SENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV---LN 111 (1342)
Q Consensus 35 ~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al---~~ 111 (1342)
+...+++.+++++.+.+...+ +...+... .+++.+++++|.+++ ++++||++|+..++.++ ++
T Consensus 7 ~~~~~~~~v~~a~~~~~~~~~---------~~~~~~~~----~l~~~la~~~~~~~v-~~~~ggt~al~~~~~~~~~~~~ 72 (375)
T 2fnu_A 7 SEPCLDKEDKKAVLEVLNSKQ---------LTQGKRSL----LFEEALCEFLGVKHA-LVFNSATSALLTLYRNFSEFSA 72 (375)
T ss_dssp CCCCCCHHHHHHHHHHHTSSC---------CSSSHHHH----HHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHSSCCCT
T ss_pred CCCCCCHHHHHHHHHHHHcCc---------ccCChHHH----HHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHhcccCC
Confidence 457788999999888874211 11123333 455589999998855 44559999999999999 89
Q ss_pred CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHH
Q psy13354 112 PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAK 191 (1342)
Q Consensus 112 pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~ 191 (1342)
+||+|+++...|++ ....+...|. +++.++.++++.+|++++++.+++ ++++++++++ .+...++++|.++|+
T Consensus 73 ~gd~Vl~~~~~~~~---~~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~-tG~~~~l~~i~~l~~ 145 (375)
T 2fnu_A 73 DRNEIITTPISFVA---TANMLLESGY--TPVFAGIKNDGNIDELALEKLINE-RTKAIVSVDY-AGKSVEVESVQKLCK 145 (375)
T ss_dssp TSCEEEECSSSCTH---HHHHHHHTTC--EEEECCBCTTSSBCGGGSGGGCCT-TEEEEEEECG-GGCCCCHHHHHHHHH
T ss_pred CCCEEEECCCccHh---HHHHHHHCCC--EEEEeccCCCCCCCHHHHHhhcCc-CceEEEEeCC-cCCccCHHHHHHHHH
Confidence 99999977755544 3444455666 556667766668899999988865 4455555444 556669999999999
Q ss_pred HcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCe-eEEEE-e-chhHHHHhhccCCcc---------
Q psy13354 192 NINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRG-GFILM-K-KKYKKIINSAVFPGI--------- 257 (1342)
Q Consensus 192 ~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~G-G~iv~-~-~~l~~~l~~~~~~~~--------- 257 (1342)
+||++||+|++|+.|....+...... .|+++.|+| |++ ++ | |++++ + +++++.+........
T Consensus 146 ~~~~~li~D~a~~~~~~~~~~~~~~~--~~i~~~s~s~~K~~-~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (375)
T 2fnu_A 146 KHSLSFLSDSSHALGSEYQNKKVGGF--ALASVFSFHAIKPI-TT-AEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGE 221 (375)
T ss_dssp HHTCEEEEECTTCTTCEETTEETTSS--SSEEEEECCTTSSS-CC-SSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEE
T ss_pred HcCCEEEEECccccCCeECCeecccc--CCeEEEeCCCCCCc-cc-cCceEEEeCCHHHHHHHHHHHhcCCccccccccc
Confidence 99999999999987755322111111 367777776 999 66 5 66665 4 567776654322111
Q ss_pred ---cc--CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCC----CCCeEEEEEccCCC--C
Q psy13354 258 ---QG--GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGG----TKSHIILVDLRNKK--I 325 (1342)
Q Consensus 258 ---~~--~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~----~~~~~v~i~~~~~~--~ 325 (1342)
.+ ....+..+++... . . +++++..+++.++++++.+.|.+. |+.+..++ ...+++++.++... .
T Consensus 222 ~~~~~~~~~~~~~~~a~~~~--~-~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T 2fnu_A 222 VKSIGHNFRLNEIQSALGLS--Q-L-KKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTC 297 (375)
T ss_dssp ESSCCCBCCCCHHHHHHHHH--H-H-TTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGG
T ss_pred cccccccCCCCHHHHHHHHH--H-H-HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccccch
Confidence 11 1123333333222 2 2 366778889999999999999986 77765431 12345577765432 2
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcc---------------cccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPY---------------FTSGIRLGSSAITT 368 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~---------------~~~~lRi~~~~~~t 368 (1342)
..++...+ .++||.+...+.|......+ ..+.+|++++..++
T Consensus 298 ~~~l~~~L-~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t 354 (375)
T 2fnu_A 298 KKLILESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLN 354 (375)
T ss_dssp HHHHHHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCC
T ss_pred HHHHHHHH-HHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCC
Confidence 33455555 56699998543333210011 12568998887655
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=209.85 Aligned_cols=323 Identities=13% Similarity=0.068 Sum_probs=201.2
Q ss_pred ccccccccchH-HHHHHHHHHHh-ccCceeeeecC----CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHH
Q psy13354 4 KNENLSKIDPK-IWEIILKEKQR-QNNNIELIASE----NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLI 74 (1342)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~~~~~-~~~~i~l~a~~----n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~L 74 (1342)
..+++...++. +.......... ..+.|++..+. +. .++.+.+++.+.+..... ..|....+..++
T Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~------~~Y~~~~g~~~l 97 (420)
T 4f4e_A 24 LFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLP------RGYLPIDGIAAY 97 (420)
T ss_dssp TTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCC------CCCCCTTCCHHH
T ss_pred HhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCC------CCCCCCCCcHHH
Confidence 34455655543 34443332222 23568888772 22 225699998887753111 223344455688
Q ss_pred HHHHHHHHHHHhC---CCC--ceEecCCHHHHHHHH--HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC
Q psy13354 75 EKIAINRLKKIFN---AEA--ANVQPHSGSQANQAV--FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL 147 (1342)
Q Consensus 75 e~~~~~~la~~~g---~~~--~vi~~~sGs~A~~~a--l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~ 147 (1342)
++++++++....+ .++ .+++++||++|+..+ +.+++.|||+|+++.+.+ ..+...+...|..+..+++..
T Consensus 98 r~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~---~~~~~~~~~~g~~~~~v~~~~ 174 (420)
T 4f4e_A 98 DASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSW---ENHRALFDMAGFEVVAYPYYD 174 (420)
T ss_dssp HHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCC---HHHHHHHHHTTCCEEEEECEE
T ss_pred HHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCc---HhHHHHHHHcCCeEEEeeeec
Confidence 8877777655444 233 566665899999999 456689999999877544 444555566777555554322
Q ss_pred CCCCCCCHHHHHHHHHhc--CCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCC-CCCC---
Q psy13354 148 NKKEKIDYKKVEYLAKKN--KPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE-YPNP--- 216 (1342)
Q Consensus 148 ~~~~~id~e~Le~~i~~~--~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~-~~~~--- 216 (1342)
++++.+|++.+++.+++. +.+++++++++|| + ..++++|+++|++||+++|+|++|..+.+.... ..+.
T Consensus 175 ~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 254 (420)
T 4f4e_A 175 AKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLF 254 (420)
T ss_dssp TTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHH
T ss_pred cccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHH
Confidence 456889999999999743 3467777666666 2 235889999999999999999998654432100 0000
Q ss_pred --CCCCcEEEecCCccCCCCCe---eEEEE---echhHHH----HhhccCCccccCCcHHHHHHHHHHHHHh-----ccc
Q psy13354 217 --VPFADFITSTTHKSLRGPRG---GFILM---KKKYKKI----INSAVFPGIQGGPLMHVIAAKAVAFKEV-----LKP 279 (1342)
Q Consensus 217 --l~~~Divv~S~sK~l~gp~G---G~iv~---~~~l~~~----l~~~~~~~~~~~~~~~~~~Aaa~al~~~-----l~~ 279 (1342)
....+++++|+||++ |+.| ||+++ ++++++. +...... .+++++...+.+++.++... ..+
T Consensus 255 ~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 332 (420)
T 4f4e_A 255 AAANLNVFVSSSFSKSF-SLYGERVGALSIITDSKDEAARVLSQLKRVIRT-NYSNPPTHGGAIVAAVLASPELRASWVQ 332 (420)
T ss_dssp HHTTCCEEEEEECTTTT-TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHT-TTSSCCSHHHHHHHHHHHCHHHHHHHHH
T ss_pred HhcCCCEEEEEeCCccC-cCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 112368899999999 7777 99864 3444433 2221111 22223333444443333221 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 280 DFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 280 ~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
+++++++++.++++++.+.|.+. |+.+.. +..++++|+.+ +.+.+..+++++||.+.+
T Consensus 333 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~-----~~~~~~~~l~~~gI~v~~ 394 (420)
T 4f4e_A 333 ELGEMRDRIRAMRNGLVERLKAAGIERDFSFIN-AQRGMFSYSGL-----TSAQVDRLREEFGIYAVS 394 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH-HSCSSEEECCC-----CHHHHHHHHHHHCEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEC-CCccEEEEeCC-----CHHHHHHHHHhCCEEecC
Confidence 56788899999999999999986 555433 35567788655 346677788778999974
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.2e-19 Score=208.78 Aligned_cols=284 Identities=18% Similarity=0.140 Sum_probs=185.9
Q ss_pred eeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-c
Q psy13354 32 LIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-L 110 (1342)
Q Consensus 32 l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~ 110 (1342)
+..+.+.+++.+.+++.+.+... .+...+...++++ .+++++|.+++++++ |||+|+..++.++ +
T Consensus 7 ~~~~~~~~~~~v~~a~~~~~~~~---------~~~~~~~~~~l~~----~la~~~~~~~~~~~~-sGt~al~~al~~~~~ 72 (367)
T 3nyt_A 7 LKNQQARIKDKIDAGIQRVLRHG---------QYILGPEVTELED----RLADFVGAKYCISCA-NGTDALQIVQMALGV 72 (367)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC---------CCSSCHHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHHHTTC
T ss_pred ccccccccCHHHHHHHHHHHhcC---------CccCChHHHHHHH----HHHHHhCCCcEEEeC-CHHHHHHHHHHHhCC
Confidence 33334455666777777766421 1233444455555 889999988665555 9999999999999 8
Q ss_pred CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHH
Q psy13354 111 NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHI 189 (1342)
Q Consensus 111 ~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~l 189 (1342)
++||+|+++...+++ ....+...|. +++.++.++ ++.+|++++++++++ ++++|+.+ +.++...++++|.++
T Consensus 73 ~~gd~Vi~~~~~~~~---~~~~~~~~G~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~-~~~G~~~~~~~i~~l 145 (367)
T 3nyt_A 73 GPGDEVITPGFTYVA---TAETVALLGA--KPVYVDIDPRTYNLDPQLLEAAITP-RTKAIIPV-SLYGQCADFDAINAI 145 (367)
T ss_dssp CTTCEEEEESSSCTH---HHHHHHHTTC--EEEEECBCTTTCSBCGGGTGGGCCT-TEEEECCB-CGGGCCCCHHHHHHH
T ss_pred CCcCEEEECCCccHH---HHHHHHHcCC--EEEEEecCCccCCcCHHHHHHhcCc-CCcEEEee-CCccChhhHHHHHHH
Confidence 999999987765544 4445566676 555566664 488999999998864 45555532 222356699999999
Q ss_pred HHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecC--CccCCC-CCeeEEEEe-chhHHHHhhccCCc---------
Q psy13354 190 AKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTT--HKSLRG-PRGGFILMK-KKYKKIINSAVFPG--------- 256 (1342)
Q Consensus 190 a~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~--sK~l~g-p~GG~iv~~-~~l~~~l~~~~~~~--------- 256 (1342)
|++||++||+|++|+.|....+.....+. |++++|| +|++++ +.||+++++ +++.+.++......
T Consensus 146 a~~~~~~li~D~a~~~g~~~~~~~~~~~~--di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~ 223 (367)
T 3nyt_A 146 ASKYGIPVIEDAAQSFGASYKGKRSCNLS--TVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRYHHIR 223 (367)
T ss_dssp HHHTTCCBEEECTTTTTCEETTEETTSSS--SEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEECS
T ss_pred HHHcCCEEEEECccccCCeECCeeccCCC--CEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcCceeec
Confidence 99999999999999887664443333333 8999997 899954 346998885 56766665532221
Q ss_pred -cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC----CeEEEEEccCCCCCHHHHH
Q psy13354 257 -IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK----SHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 257 -~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~----~~~v~i~~~~~~~~~~~~~ 331 (1342)
.++...++..+++..+..+ .++...++..++++++.+.|.+.++.+...+.. .+.+++.++ +.+.+.
T Consensus 224 ~g~~~~~~~~~aa~~~~~l~----~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ 295 (367)
T 3nyt_A 224 VGVNSRLDTLQAAILLPKLE----IFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD----NRESVQ 295 (367)
T ss_dssp CCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS----SHHHHH
T ss_pred cCcCCCccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC----CHHHHH
Confidence 1123334455554444433 345567778888999999999887654322211 123444443 344455
Q ss_pred HHHHHCCceeeeccC
Q psy13354 332 SILESANIICNKNSI 346 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~ 346 (1342)
..|+++||.+.+.+.
T Consensus 296 ~~L~~~GI~~~~~~~ 310 (367)
T 3nyt_A 296 ASLKAAGVPTAVHYP 310 (367)
T ss_dssp HHHHHHTCCCBCSCS
T ss_pred HHHHHCCCceeccCC
Confidence 555556999987653
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=210.25 Aligned_cols=315 Identities=10% Similarity=0.056 Sum_probs=204.8
Q ss_pred cCceeeeecCC-CCc--HHH--HHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh-CCC-Cc---eEecC
Q psy13354 27 NNNIELIASEN-YTS--LAV--MEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF-NAE-AA---NVQPH 96 (1342)
Q Consensus 27 ~~~i~l~a~~n-~l~--~~v--~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~-g~~-~~---vi~~~ 96 (1342)
.+.+.+..+.+ .++ |.+ .+++.+.+.... ...|+...+..++++++++++.+.. +.+ +. +++++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~------~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~ 120 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDE------IFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTN 120 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGG------TSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEES
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCccc------ccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcC
Confidence 45677877766 332 324 666555442101 1123333345677775555554432 544 34 66665
Q ss_pred CHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhh-CCceeEEEEecCCC-CCCCCHHHHHHHHHhc--CCeEEEE
Q psy13354 97 SGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNM-SGKWFNSICYGLNK-KEKIDYKKVEYLAKKN--KPKLIIA 172 (1342)
Q Consensus 97 sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~-~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~--~~~liv~ 172 (1342)
||++|+..++.++++|||+|++..+.+++ ....+.. .|. +++.++.++ ++.+|++++++.+++. +++++++
T Consensus 121 g~~~al~~~~~~l~~~gd~Vl~~~p~y~~---~~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i 195 (430)
T 2x5f_A 121 ALTHGLSLVGDLFVNQDDTILLPEHNWGN---YKLVFNTRNGA--NLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMIL 195 (430)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEESSCCTH---HHHHHTTTTCC--EEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEE
T ss_pred CchHHHHHHHHHHhCCCCEEEEcCCcCcc---HHHHHHHhcCC--eEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEE
Confidence 88999999999999999999987755544 4444555 666 455555543 4678999999999863 4566666
Q ss_pred cCCCCC--cccC---HHHHHHHHHH-----cCCEEEEEcccchhhhhcCCCCCCC------CCC---cEEEecCCccCCC
Q psy13354 173 GASAYS--QYID---FERFYHIAKN-----INSYFMVDMAHYAGLIAAGEYPNPV------PFA---DFITSTTHKSLRG 233 (1342)
Q Consensus 173 ~~s~~~--~~~~---l~~I~~la~~-----~gi~LIvDea~~~g~~~~~~~~~~l------~~~---Divv~S~sK~l~g 233 (1342)
+.++|| ...+ +++|+++|++ ||++||+|++|+.+.+....+.+.. ... +++++|+||++ |
T Consensus 196 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~ 274 (430)
T 2x5f_A 196 NYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEF-F 274 (430)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHT-T
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCC-C
Confidence 666666 2234 8999999999 9999999999986544322122211 123 57799999999 6
Q ss_pred CCe---eEEEE---echhHHHHhhccCC---ccccCCcHHHHHHHHHHHH-Hh-ccchHHHHHHHHHHHHHHHHHHHH--
Q psy13354 234 PRG---GFILM---KKKYKKIINSAVFP---GIQGGPLMHVIAAKAVAFK-EV-LKPDFKIYQKQVVKNAKILSKILD-- 300 (1342)
Q Consensus 234 p~G---G~iv~---~~~l~~~l~~~~~~---~~~~~~~~~~~~Aaa~al~-~~-l~~~~~~~~~~l~~~a~~l~~~L~-- 300 (1342)
+.| ||+++ ++++++.+...... ....+++.+.+.++..++. .. ..+.++..++++.++++++.+.|.
T Consensus 275 ~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 354 (430)
T 2x5f_A 275 AWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYAD 354 (430)
T ss_dssp CGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCG
T ss_pred CCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556 99999 88888877653222 0122344555555554444 21 111344478889999999999998
Q ss_pred --hCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 301 --QRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 301 --~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.|+.+.. +.+++++|+.++ ...+.++...+++++||.+.++ . .+++|++++.
T Consensus 355 ~~~~g~~~~~-~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g-------~---~~~iRis~~~ 409 (430)
T 2x5f_A 355 QYHSHWQAYD-FNSGYFMAIKVH-DVDPEALRKHLIDKYSIGVIAL-------N---ATDIRIAFSC 409 (430)
T ss_dssp GGTTTEEECC-CCBSSEEEEEES-SSCHHHHHHHHHHHHCEECEEC-------S---SSEEEEEGGG
T ss_pred CCCCCceeeC-CCceEEEEeCCC-CCCHHHHHHHHHHhCCEEEecC-------C---CCeEEEEEec
Confidence 66777643 455678999987 3334567777776469999875 1 3569999985
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=197.94 Aligned_cols=302 Identities=11% Similarity=0.040 Sum_probs=196.0
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
++.+.+..+.+. .++.+.+++.+.+.. ..+|+. .+..++++ .+++++|.+ +.+++++||++|+.
T Consensus 24 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~-------~~~~~l~~----~la~~~~~~~~~v~~~~g~~~al~ 90 (364)
T 1lc5_A 24 DQLLDFSANINPLGMPVSVKRALIDNLDC--IERYPD-------ADYFHLHQ----ALARHHQVPASWILAGNGETESIF 90 (364)
T ss_dssp GGSEECSSCCCTTCCCHHHHHHHHHTGGG--GGSCCC-------TTCHHHHH----HHHHHHTSCGGGEEEESSHHHHHH
T ss_pred cceEEeccccCCCCCCHHHHHHHHHHHHH--hhcCCC-------CCHHHHHH----HHHHHHCcCHHHEEECCCHHHHHH
Confidence 356788777654 456688888777642 112221 12345555 788888876 56677769999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--CCCCCHHHHHHHHHhcCCeEEEEcCCCCC--c
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--KEKIDYKKVEYLAKKNKPKLIIAGASAYS--Q 179 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--~~~id~e~Le~~i~~~~~~liv~~~s~~~--~ 179 (1342)
.++.++ +||+|++..+.+++ ....+...|.. ++.++.+. ++.+ ++++.+.+.+ ++++++++.+++| .
T Consensus 91 ~~~~~~--~gd~vl~~~p~y~~---~~~~~~~~g~~--~~~v~~~~~~~~~~-l~~~~~~~~~-~~~~v~i~~p~nptG~ 161 (364)
T 1lc5_A 91 TVASGL--KPRRAMIVTPGFAE---YGRALAQSGCE--IRRWSLREADGWQL-TDAILEALTP-DLDCLFLCTPNNPTGL 161 (364)
T ss_dssp HHHHHH--CCSEEEEEESCCTH---HHHHHHHTTCE--EEEEECCGGGTTCC-CTTHHHHCCT-TCCEEEEESSCTTTCC
T ss_pred HHHHHc--CCCeEEEeCCCcHH---HHHHHHHcCCe--EEEEeCCcccccch-hHHHHHhccC-CCCEEEEeCCCCCCCC
Confidence 999988 78999987755544 44445566764 44445543 3332 4545544433 4566665555555 3
Q ss_pred ccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEE-EechhHHHHh
Q psy13354 180 YID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFIL-MKKKYKKIIN 250 (1342)
Q Consensus 180 ~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv-~~~~l~~~l~ 250 (1342)
..+ +++|+++|++||++||+||+|+.+.+.........+ ..+++++|+||++ |+.| ||++ +++++++.+.
T Consensus 162 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~l~ 240 (364)
T 1lc5_A 162 LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY-AIPGLRLGYLVNSDDAAMARMR 240 (364)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTT-TCTTTCCEEEECCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhh-cCCccceEEEEECCHHHHHHHH
Confidence 334 999999999999999999999865442111111111 2478899999999 5445 9999 8999988887
Q ss_pred hccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHH
Q psy13354 251 SAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKI 329 (1342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~ 329 (1342)
.....+ +++...+.++..++. . ..++++.++++.++++++.+.|.+. |+.+. +..++++|+.++.. ..++
T Consensus 241 ~~~~~~---~~~~~~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~g~~~~~~~~~~--~~~l 311 (364)
T 1lc5_A 241 RQQMPW---SVNALAALAGEVALQ-D-SAWQQATWHWLREEGARFYQALCQLPLLTVY--PGRANYLLLRCERE--DIDL 311 (364)
T ss_dssp HHSCTT---CSCHHHHHHHHHGGG-C-HHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC--CCSSSEEEEEESCT--TCCH
T ss_pred HhCCCC---CCCHHHHHHHHHHHh-C-cHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC--CCCCeEEEEECCCc--HHHH
Confidence 654332 233444444443332 2 2367778888999999999999886 77764 34567788887642 3356
Q ss_pred HHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
...+++ +||.+.++..+... ..+++|++++.
T Consensus 312 ~~~l~~-~gi~v~~g~~~~~~----~~~~iRis~~~ 342 (364)
T 1lc5_A 312 QRRLLT-QRILIRSCANYPGL----DSRYYRVAIRS 342 (364)
T ss_dssp HHHHHT-TTEECEECTTSTTC----CTTEEEEECCC
T ss_pred HHHHHH-CCcEEeeCcccCCC----CCCEEEEEeCC
Confidence 666664 59999987544321 13579999763
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-18 Score=200.83 Aligned_cols=209 Identities=26% Similarity=0.305 Sum_probs=171.0
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHc----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDK----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
..|..+|+|.+|++++|++.+++.+...+.. +...+.+||+||+|||||++|+.+++.+.+
T Consensus 17 ~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~--------------- 81 (338)
T 3pfi_A 17 ETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA--------------- 81 (338)
T ss_dssp ------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC---------------
T ss_pred hhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC---------------
Confidence 3688999999999999999999999888864 445556899999999999999999998863
Q ss_pred CCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC-------
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP------- 527 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~------- 527 (1342)
.++.++++.......+...+.. .+...+++|||++.++.+.++.|++.+++..
T Consensus 82 --------------~~~~~~~~~~~~~~~~~~~~~~------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~ 141 (338)
T 3pfi_A 82 --------------NIKTTAAPMIEKSGDLAAILTN------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGS 141 (338)
T ss_dssp --------------CEEEEEGGGCCSHHHHHHHHHT------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC------
T ss_pred --------------CeEEecchhccchhHHHHHHHh------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhccc
Confidence 3566666554555556555543 2456799999999999999999999998642
Q ss_pred -----------CcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHH
Q psy13354 528 -----------KYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMR 595 (1342)
Q Consensus 528 -----------~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr 595 (1342)
+.+++|++||....+.++|.+|+ ..+.|.+++.+++..++...+...+..+++++++.+++.++|++|
T Consensus 142 ~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r 221 (338)
T 3pfi_A 142 GPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR 221 (338)
T ss_dssp ---CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHH
T ss_pred CccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHH
Confidence 13788999999989999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 596 DALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 596 ~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
.+.+.++.+..++ ...|+.+++..++.
T Consensus 222 ~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 252 (338)
T 3pfi_A 222 IALRLLKRVRDFADVNDEEIITEKRANEALN 252 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHH
Confidence 9999999976554 34488888876653
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-18 Score=200.71 Aligned_cols=306 Identities=15% Similarity=0.145 Sum_probs=196.7
Q ss_pred CceeeeecCC-CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHH
Q psy13354 28 NNIELIASEN-YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVF 106 (1342)
Q Consensus 28 ~~i~l~a~~n-~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al 106 (1342)
..|.+.++.. ..+|.+++++.+... ++ ...|+.. .+.+++++++++++|.+..+++++||++|+..++
T Consensus 8 ~~id~~~~~~~~~~~~v~~a~~~~~~-----~~--~~~~~~~----~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al 76 (356)
T 1v72_A 8 PALGFSSDNIAGASPEVAQALVKHSS-----GQ--AGPYGTD----ELTAQVKRKFCEIFERDVEVFLVPTGTAANALCL 76 (356)
T ss_dssp CCCBCSCGGGCCCCHHHHHHHHHTTS-----SC--CCSTTCS----HHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHH
T ss_pred ceEeeccCCccCCCHHHHHHHHhhcc-----Cc--ccccccc----hHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHH
Confidence 3455555433 345668888776642 11 1123222 3455566699999995444566669999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhC--CceeEEEEecCCCCCCCCHHHHHH-HHHhc------CCeEEEEcCCCC
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMS--GKWFNSICYGLNKKEKIDYKKVEY-LAKKN------KPKLIIAGASAY 177 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~--g~~~~~v~~~~~~~~~id~e~Le~-~i~~~------~~~liv~~~s~~ 177 (1342)
.+++.|||+|++....|+...... .+... |. +++.++.+ ++.+|++++++ ++++. ++++|+++++++
T Consensus 77 ~~~~~~gd~vi~~~~~~~~~~~~~-~~~~~~~g~--~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~ 152 (356)
T 1v72_A 77 SAMTPPWGNIYCHPASHINNDECG-APEFFSNGA--KLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE 152 (356)
T ss_dssp HTSCCTTEEEEECTTSHHHHSSTT-HHHHHTTSC--EEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT
T ss_pred HHhcCCCCEEEEcCccchhhhhch-HHHHHhCCc--EEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC
Confidence 999999999997664443322110 13333 65 55555654 57899999999 88752 456777766554
Q ss_pred Cc----ccCHHHHHHHHHHcCCEEEEEcccchhhh-hcCCCCCCC---CCCcEEEecCCccCCCCCe-eEEEEechhHHH
Q psy13354 178 SQ----YIDFERFYHIAKNINSYFMVDMAHYAGLI-AAGEYPNPV---PFADFITSTTHKSLRGPRG-GFILMKKKYKKI 248 (1342)
Q Consensus 178 ~~----~~~l~~I~~la~~~gi~LIvDea~~~g~~-~~~~~~~~l---~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~ 248 (1342)
++ ..++++|+++|++||++||+|++|..+.. ..+.....+ ..+|+++.|+||+ ++|.| |++++++++++.
T Consensus 153 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~~~~~~~ 231 (356)
T 1v72_A 153 VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFNTSLATE 231 (356)
T ss_dssp TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESSGGGHHH
T ss_pred CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEECHHHHhh
Confidence 42 34799999999999999999999975432 122222222 2468899999999 47888 799889888877
Q ss_pred HhhccC-CccccCCcHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCC
Q psy13354 249 INSAVF-PGIQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKI 325 (1342)
Q Consensus 249 l~~~~~-~~~~~~~~~~~~~Aaa~al~~~l~-~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~ 325 (1342)
+..... ....... ...++.. ..+.+. ..+.+..+++.++++++.+.|.+. |+++.. +..++++|+.++
T Consensus 232 ~~~~~~~~~~~~~~---~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~---- 302 (356)
T 1v72_A 232 MSYRRKRAGHLSSK---MRFLSAQ-IDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLG-GTEANILFCRLD---- 302 (356)
T ss_dssp HHHHHHHTTCCCSS---THHHHHH-HHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEES-CCCSSEEEEEEC----
T ss_pred HHHHhhccCchhhh---HHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEcc-CCCccEEEEEcC----
Confidence 654211 1111111 1122221 222222 235556778889999999999884 887754 456788888875
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.++...+. ++||.+.++.+. .+.+|++++..++
T Consensus 303 -~~~~~~l~-~~gi~v~~g~~~--------~~~iRi~~~~~~~ 335 (356)
T 1v72_A 303 -SAMIDALL-KAGFGFYHDRWG--------PNVVRFVTSFATT 335 (356)
T ss_dssp -HHHHHHHH-HTTCBCBCSSSS--------TTEEEEECCTTCC
T ss_pred -HHHHHHHH-hcCeEEeccccC--------CCeEEEEecCCCC
Confidence 25666665 559999865421 3569999776544
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-17 Score=203.26 Aligned_cols=314 Identities=11% Similarity=0.044 Sum_probs=207.8
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC------ceEecCCHHHHHHHHHHHcc
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA------ANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~------~vi~~~sGs~A~~~al~al~ 110 (1342)
.+.++.+.+++.+++.. .. ..+...+...++++++++++++++|.+. .+++++|||+|+..++.++.
T Consensus 52 ~~~~~~v~e~~~~a~~~-~~------~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~ 124 (452)
T 2dgk_A 52 TWDDENVHKLMDLSINK-NW------IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMK 124 (452)
T ss_dssp CCCCHHHHHHHHHTTTC-BT------TCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-CC------CChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHH
Confidence 35666788887766531 11 1123346777899999999999999873 25666699999999998875
Q ss_pred C--------CC-----CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCC
Q psy13354 111 N--------PG-----DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASA 176 (1342)
Q Consensus 111 ~--------pG-----D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~ 176 (1342)
. +| ++|+++. .|.+....+...|+ +++.++.++ +|.+|++++++++++. +++|+++.++
T Consensus 125 ~~~~~~~~~~G~~~~~~~vi~~~----~h~~~~~~~~~~G~--~v~~v~~~~~~~~~d~~~l~~~i~~~-t~~v~~~~~~ 197 (452)
T 2dgk_A 125 WRWRKRMEAAGKPTDKPNLVCGP----VQICWHKFARYWDV--ELREIPMRPGQLFMDPKRMIEACDEN-TIGVVPTFGV 197 (452)
T ss_dssp HHHHHHHHHTTCCCSCCEEEESS----CCHHHHHHHHHTTC--EEEECCCBTTBCSCCHHHHHHHCCTT-EEEEECBBSC
T ss_pred HHHHHHHHhcCCCCCCcEEEECC----CcHHHHHHHHHcCc--eEEEEecCCCCCeECHHHHHHHHhhC-CEEEEEEcCC
Confidence 3 55 5888655 45555666677787 555556665 7999999999998764 5666665555
Q ss_pred CC--cccCHHHHHHHHHHc------CCEEEEEcccchhhh--hcCCCCCC--CCCCcEEEecCCccCCCCCe-eEEEEec
Q psy13354 177 YS--QYIDFERFYHIAKNI------NSYFMVDMAHYAGLI--AAGEYPNP--VPFADFITSTTHKSLRGPRG-GFILMKK 243 (1342)
Q Consensus 177 ~~--~~~~l~~I~~la~~~------gi~LIvDea~~~g~~--~~~~~~~~--l~~~Divv~S~sK~l~gp~G-G~iv~~~ 243 (1342)
++ ...|+++|+++|++| |+|+++|++|+.+.. ........ ...+|++++++||++.+|.| |++++++
T Consensus 198 n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~ 277 (452)
T 2dgk_A 198 TYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRD 277 (452)
T ss_dssp TTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESS
T ss_pred cCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcC
Confidence 44 555999999999996 999999999987643 11211111 33579999999999867766 9999975
Q ss_pred h-hH-HHHhhccCCcc---------ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCC-
Q psy13354 244 K-YK-KIINSAVFPGI---------QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGG- 310 (1342)
Q Consensus 244 ~-l~-~~l~~~~~~~~---------~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~- 310 (1342)
. +. +.+.. ...+. .++.......++.+++.....+++++..++..++++++.+.|.+.+ +++..+.
T Consensus 278 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 356 (452)
T 2dgk_A 278 EEALPQELVF-NVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGR 356 (452)
T ss_dssp GGGSCGGGCE-EECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred HHHHHHHhcc-CccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCC
Confidence 3 32 33321 11111 1111121333334444444445778889999999999999999974 8876532
Q ss_pred --CCCeEEEEEccCCC---CC-HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 311 --TKSHIILVDLRNKK---IT-GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 311 --~~~~~v~i~~~~~~---~~-~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
...+++.+.+++.. .+ .++...|. +.||.+.....|....+ ...+|++++..+|.
T Consensus 357 ~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~---~~~lRis~~~~~t~ 417 (452)
T 2dgk_A 357 PDEGIPAVCFKLKDGEDPGYTLYDLSERLR-LRGWQVPAFTLGGEATD---IVVMRIMCRRGFEM 417 (452)
T ss_dssp TTTBSSEEEEEECTTCCCSCCHHHHHHHHH-HTTCBCCEEECSTTCTT---CEEEEEECCTTCCH
T ss_pred CCCCeEEEEEEecCcccccCCHHHHHHHHH-hcCCeeeeeeCCcccCC---eEEEEEEecCCCCH
Confidence 34567777776431 23 45555555 45998765444433221 35799999987763
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-19 Score=220.95 Aligned_cols=317 Identities=13% Similarity=0.052 Sum_probs=206.2
Q ss_pred eeeeecCCC-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC------CCceEecCCHHHHH
Q psy13354 30 IELIASENY-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA------EAANVQPHSGSQAN 102 (1342)
Q Consensus 30 i~l~a~~n~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~------~~~vi~~~sGs~A~ 102 (1342)
+.+..+... .++.+++++.+.+.. . .++....+..++++++++.+.+..+. ++.+++++||++|+
T Consensus 106 i~l~~g~~~~~~~~~v~a~~~~~~~---~-----~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al 177 (533)
T 3f6t_A 106 VNYCHTELGLNRDKVVAEWVNGAVA---N-----NYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAI 177 (533)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHT---C-----SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHH
T ss_pred eeccCCCCCcCCcHHHHHHHHHHHh---C-----CCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHH
Confidence 445555433 345577776666642 1 22223445568888888888766333 23455555889999
Q ss_pred HHHHHH-----ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC--CCCCCCCHHHHHHHHHhcCCeEEEEcCC
Q psy13354 103 QAVFFS-----VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL--NKKEKIDYKKVEYLAKKNKPKLIIAGAS 175 (1342)
Q Consensus 103 ~~al~a-----l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~--~~~~~id~e~Le~~i~~~~~~liv~~~s 175 (1342)
..++.+ ++++||+|++..+.|++ ........|..+..++++. ++++.+|++++++++.+ ++++++++.+
T Consensus 178 ~~~~~~l~~~~l~~~gd~Viv~~p~~~~---~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~-~~k~v~l~~p 253 (533)
T 3f6t_A 178 VYAFHSLAENHLLKKGDKIAINEPIFTP---YLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP-SIKALIVVNP 253 (533)
T ss_dssp HHHHHHHHHTTSSCTTCEEEEESSCCHH---HHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT-TEEEEEEESS
T ss_pred HHHHHHhhhhhccCCcCEEEEcCCCcHH---HHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC-CCeEEEEeCC
Confidence 999998 78999999987755543 3444455666555555443 45688999999998865 4566665555
Q ss_pred CCC-c-cc---CHHHHHHHHH-HcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe---eEEEEech--
Q psy13354 176 AYS-Q-YI---DFERFYHIAK-NINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG---GFILMKKK-- 244 (1342)
Q Consensus 176 ~~~-~-~~---~l~~I~~la~-~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G---G~iv~~~~-- 244 (1342)
+|| + .. ++++|+++|+ +||++||+|++|+................+++++|+||.+ |+.| ||++++++
T Consensus 254 ~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~~~~~~ 332 (533)
T 3f6t_A 254 TNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLF-GCTGWRLGVIALNEKNV 332 (533)
T ss_dssp CTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHH-TCGGGCEEEEEEESSCH
T ss_pred CCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccC-CCcccceEEEEECcHHH
Confidence 555 2 22 4668899999 6899999999997433211000000112358999999999 7777 99999886
Q ss_pred ---hHHHHh-------------------------------hccCCccccCCcHHHHHHHH----HHHH-----HhccchH
Q psy13354 245 ---YKKIIN-------------------------------SAVFPGIQGGPLMHVIAAKA----VAFK-----EVLKPDF 281 (1342)
Q Consensus 245 ---l~~~l~-------------------------------~~~~~~~~~~~~~~~~~Aaa----~al~-----~~l~~~~ 281 (1342)
+++.+. .....+...+++.+.+.+++ .++. .....+.
T Consensus 333 ~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~ 412 (533)
T 3f6t_A 333 FDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYI 412 (533)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHH
T ss_pred HHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHH
Confidence 433220 11233344455566666643 2222 1233467
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC----------------CCCHHHHHHHHHHCCceeeecc
Q psy13354 282 KIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK----------------KITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 282 ~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~----------------~~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
++.++++.++++++.+.|. .++.+. .+.+++++|++++.. ..+.+++..+++++||.+.++.
T Consensus 413 ~~~~~~~~~r~~~l~~~L~-~~~~~~-~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~ 490 (533)
T 3f6t_A 413 DIARKLVSERYDQLHDAMQ-APKDET-DTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGV 490 (533)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CCCCCS-TTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTE
T ss_pred HHHHHHHHHHHHHHHHhcC-CCcccc-CCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCc
Confidence 7888999999999999997 776542 356678899988631 2345788888888899999876
Q ss_pred CCCCCCCcccccccccccccc
Q psy13354 346 IPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 346 ~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
.+..+ .+++|++++..
T Consensus 491 ~f~~~-----~~~iRls~a~~ 506 (533)
T 3f6t_A 491 GFGAK-----PGELRVSQANL 506 (533)
T ss_dssp EECSS-----TTEEEEESSSS
T ss_pred ccCCC-----CCEEEEEEeeC
Confidence 65543 35799998653
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.6e-19 Score=208.09 Aligned_cols=278 Identities=15% Similarity=0.095 Sum_probs=179.0
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCE
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDT 115 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~ 115 (1342)
..+++.+++++.+.+.... |...+...++++ .+++++|.+++++++ |||+|+..++.++ +++||+
T Consensus 13 ~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~----~la~~~~~~~~i~~~-sgt~al~~~l~~l~~~~gd~ 78 (373)
T 3frk_A 13 DEIEYEIKFKFEEIYKRNW---------FILGDEDKKFEQ----EFADYCNVNYCIGCG-NGLDALHLILKGYDIGFGDE 78 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------CSSSHHHHHHHH----HHHHHHTSSEEEEES-CHHHHHHHHHHHTTCCTTCE
T ss_pred CCCCHHHHHHHHHHHHCCC---------ccCCchHHHHHH----HHHHHhCCCeEEEeC-CHHHHHHHHHHHcCCCCcCE
Confidence 3445557777777664311 233444455555 889999988665555 9999999999999 999999
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcC
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNIN 194 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~g 194 (1342)
|+++...+++ ....+...|. +++.++.+ +++.+|++++++++++ ++++++.++ ..+...++++|.++|++||
T Consensus 79 Vi~~~~~~~~---~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~n-~~G~~~~l~~i~~l~~~~~ 151 (373)
T 3frk_A 79 VIVPSNTFIA---TALAVSYTGA--KPIFVEPDIRTYNIDPSLIESAITE-KTKAIIAVH-LYGQPADMDEIKRIAKKYN 151 (373)
T ss_dssp EEEETTSCTH---HHHHHHHHSC--EEEEECEETTTTEECGGGTGGGCCT-TEEEEEEEC-CTTCCCCHHHHHHHHHHHT
T ss_pred EEECCCCcHH---HHHHHHHcCC--EEEEEeccccccCcCHHHHHHhcCC-CCeEEEEEC-CCcCcccHHHHHHHHHHcC
Confidence 9987765554 4444566676 44555555 5688999999998876 455555422 2335669999999999999
Q ss_pred CEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCC-CCeeEEEEec-hhHHHHhhccCCcc----------ccC
Q psy13354 195 SYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRG-PRGGFILMKK-KYKKIINSAVFPGI----------QGG 260 (1342)
Q Consensus 195 i~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~g-p~GG~iv~~~-~l~~~l~~~~~~~~----------~~~ 260 (1342)
++||+|++|+.|....+..... ..|++++||+ |++++ +.||++++++ ++.+.+......+. ++.
T Consensus 152 ~~li~D~a~~~g~~~~~~~~~~--~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~ 229 (373)
T 3frk_A 152 LKLIEDAAQAHGSLYKGMKVGS--LGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNS 229 (373)
T ss_dssp CEEEEECTTCTTCEETTEETTS--SSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBC
T ss_pred CEEEEECCcccCCEECCEeccc--cccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccC
Confidence 9999999999876533332222 2589999966 99955 4569988875 46555543221111 112
Q ss_pred CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCC----eEEEEEccCCCCCHHHHHHHHHH
Q psy13354 261 PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKS----HIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 261 ~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~----~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
...+..+++..+.. +.++...++..++++++.+.|.+.++.+...+... +.+.+... +.+.+...|.+
T Consensus 230 ~~~~~~aa~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~ 301 (373)
T 3frk_A 230 RLDELQAGFLRVKL----KYLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRSE----KRDELQKYLNN 301 (373)
T ss_dssp CCCHHHHHHHHHHH----HTHHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEES----SHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEeC----CHHHHHHHHHH
Confidence 22344444433322 24556778888899999999988774432211111 12223322 34445555556
Q ss_pred CCceeeecc
Q psy13354 337 ANIICNKNS 345 (1342)
Q Consensus 337 ~GI~v~~~~ 345 (1342)
+||.+++.+
T Consensus 302 ~gI~v~~~~ 310 (373)
T 3frk_A 302 NGIGTLIHY 310 (373)
T ss_dssp TTBCCBCSC
T ss_pred CCCCcccCc
Confidence 699998765
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=204.66 Aligned_cols=312 Identities=12% Similarity=0.060 Sum_probs=201.3
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCC--ccCCcchHHHHHHHHHHHHHHHhCCCC--c-eEecCCHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKR--YYGGCKFIDLIEKIAINRLKKIFNAEA--A-NVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~--~~~~~~~~~~Le~~~~~~la~~~g~~~--~-vi~~~sGs~A~~ 103 (1342)
.+.+.+++..+|+.+++++.+.+.+ +. +.+.+. .....+...++.+++++++++++|.+. . +++++||++|+.
T Consensus 5 ~~l~~~~~~~~~~~v~~a~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~ 82 (362)
T 2c0r_A 5 AYNFNAGPAALPLEVLERAQAEFVD-YQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFA 82 (362)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSS-ST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHH
T ss_pred eeeccCCCCCCCHHHHHHHHHHHhh-hh-hcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHH
Confidence 3567788888999999998887742 21 111110 011123345677789999999999873 3 466668899999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QY 180 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~ 180 (1342)
.++.++++|||+|+++...+..+. ........| .+..++++.+ ....+|.++++ +++ +++++++++++++ +.
T Consensus 83 ~~~~~l~~~gd~vl~~~~~~~~~~-~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~-~t~~v~~~~~~n~tG~ 157 (362)
T 2c0r_A 83 MIPMNFLKEGQTANYVMTGSWASK-ALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD-NAAYLHLTSNETIEGA 157 (362)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHH-HHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT-TEEEEEEESEETTTTE
T ss_pred HHHHhcCCCCCeEEEEecCcHhHH-HHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCC-CcCEEEEeCCcCccce
Confidence 999999999999987653321111 123345557 6666665421 12234665543 433 4566666554544 33
Q ss_pred --cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc----
Q psy13354 181 --IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV---- 253 (1342)
Q Consensus 181 --~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~---- 253 (1342)
.++++| +|+++|+|++|+.|... . .+...|++++|+||++ ||.| ||+++++++++.+....
T Consensus 158 ~~~~l~~i------~~~~vivD~a~~~~~~~----~-~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~~~~~l~~~~~~~~ 225 (362)
T 2c0r_A 158 QFKAFPDT------GSVPLIGDMSSDILSRP----F-DLNQFGLVYAGAQKNL-GPSGVTVVIVREDLVAESPKHLPTML 225 (362)
T ss_dssp ECSSCCCC------TTSCEEEECTTTTTSSC----C-CGGGCSEEEEETTTTT-CCSSCEEEEEEGGGSSSCCTTSCGGG
T ss_pred eccccccc------CCCEEEEEChhhccCCc----c-chhHCcEEEEeccccc-cCcCcEEEEEcHHHHhhccccCchHH
Confidence 366666 89999999999876431 1 1222489999999999 7889 99999998765554311
Q ss_pred -------CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCC-c-EEeeCC--CCCeEEEEEcc
Q psy13354 254 -------FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRG-I-RIVSGG--TKSHIILVDLR 321 (1342)
Q Consensus 254 -------~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g-~-~~~~~~--~~~~~v~i~~~ 321 (1342)
.....++++.+.+.++..++...... +++.+.+++.++++++.+.|.+.| + ++..++ ....++++.++
T Consensus 226 ~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (362)
T 2c0r_A 226 RYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLA 305 (362)
T ss_dssp CHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECS
T ss_pred hHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcC
Confidence 11223456667777777666554433 578889999999999999999987 6 764321 13456777776
Q ss_pred CCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 322 NKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 322 ~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
....+.+++.. |.++||.+.++..+ .+++|++++..++
T Consensus 306 ~~~~~~~~~~~-L~~~gi~~~~g~~~--------~~~iRis~~~~~~ 343 (362)
T 2c0r_A 306 SEELEKEFVKA-SEQEGFVGLKGHRS--------VGGLRASIYNAVP 343 (362)
T ss_dssp CHHHHHHHHHH-HHHTTEESCBCCTT--------TCSEEEECCTTSC
T ss_pred CcchHHHHHHH-HHHCCCeeccCCCC--------CCEEEEECCCCCC
Confidence 42223445554 55669987643211 2469999987665
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=198.80 Aligned_cols=311 Identities=18% Similarity=0.104 Sum_probs=190.2
Q ss_pred HHHHHHHHHHhcc--Cceeeeec--CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-
Q psy13354 15 IWEIILKEKQRQN--NNIELIAS--ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE- 89 (1342)
Q Consensus 15 ~~~~~~~~~~~~~--~~i~l~a~--~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~- 89 (1342)
.+..++....... +.+++..+ ...+++.+++++. .+ .+ ...+++.+++.+++++|.+
T Consensus 14 ~~~~~~~~i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~-----~~----------~~---~~~~~~~~~~~~a~~~g~~~ 75 (374)
T 2aeu_A 14 ARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLN-----TY----------IG---SSYFAEKVNEYGLKHLGGDE 75 (374)
T ss_dssp HHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHT-----ST----------TH---HHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHhccCccceeeecccCCCCCCCHHHHHHHH-----Hh----------cC---chHHHHHHHHHHHHHhCCCC
Confidence 4444444433322 34544443 3567777888865 11 00 1245566777888899982
Q ss_pred -CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCe
Q psy13354 90 -AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPK 168 (1342)
Q Consensus 90 -~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~ 168 (1342)
+.+++++||++|+..++.++ |||+|+++.+.|+++++........|.. ++.+ .|++++++. + .+++
T Consensus 76 ~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~--~~~v-------~d~~~l~~~-~-~~~~ 142 (374)
T 2aeu_A 76 NDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAK--YFES-------DKVGEILNK-I-DKDT 142 (374)
T ss_dssp TEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCE--EEEE-------SCHHHHHTT-C-CTTE
T ss_pred cceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcE--EEEe-------CCHHHHHhc-C-CCcc
Confidence 33444559999999999988 9999999888887777655455666764 4433 288999887 4 4567
Q ss_pred E-EEEcCCCCC-c--ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCeeEEEEec
Q psy13354 169 L-IIAGASAYS-Q--YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRGGFILMKK 243 (1342)
Q Consensus 169 l-iv~~~s~~~-~--~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~GG~iv~~~ 243 (1342)
+ +++++++++ + ..++++|.++|++||++||+|++|+.+.........+.. ..|++++|+||+++|+.+||+++++
T Consensus 143 ~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~~G~~~~~~ 222 (374)
T 2aeu_A 143 LVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKK 222 (374)
T ss_dssp EEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEH
T ss_pred EEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcceEEEEECH
Confidence 7 777666666 3 458999999999999999999998776421111110111 3589999999999777779999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH--------HHHHHHh----CCcEEeeCCC
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKI--------LSKILDQ----RGIRIVSGGT 311 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~--------l~~~L~~----~g~~~~~~~~ 311 (1342)
++++.+......+.. +++...+.++..++.. .. . +..+++.++++. +.+.|.. .|+.+...+.
T Consensus 223 ~~~~~l~~~~~~~~~-~~~~~~~~a~~~al~~-~~--~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~ 297 (374)
T 2aeu_A 223 ELVDKIYIEGTKFGL-EAQPPLLAGIYRALKN-FN--L-ERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPT 297 (374)
T ss_dssp HHHHHHHHHHHTTTC-BCCHHHHHHHHHHHHH-CC--H-HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSS
T ss_pred HHHHHHHHhhccccC-CCCHHHHHHHHHHHHH-Hh--H-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCc
Confidence 998888764332222 2334444444444433 22 1 123334444433 4444443 2455433333
Q ss_pred CCeEEEEEccCCC---CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 312 KSHIILVDLRNKK---ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 312 ~~~~v~i~~~~~~---~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+.++.|.+..... .+.+++..+++++||.+.++..+ +.. .+++|++++..
T Consensus 298 g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~--~~~---~~~lRi~~~~~ 350 (374)
T 2aeu_A 298 GFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM--PGA---SKSLRIDLTSR 350 (374)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSS--CSS---CCSEEEETTSG
T ss_pred eEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCC--CCC---CCeEEEEcCCc
Confidence 3334444332110 01125667777789999876432 111 35799998753
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=199.92 Aligned_cols=284 Identities=13% Similarity=0.115 Sum_probs=188.3
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCEE
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDTI 116 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~V 116 (1342)
.+++.+++++.+.+.... + .+.......++++ .+++++|.++.++++ +|++|+..++.++ +++||+|
T Consensus 14 ~~~~~~~~a~~~~l~~~~---~----~~~~~~~~~~l~~----~la~~~~~~~~i~~~-sGt~al~~~l~~l~~~~gd~V 81 (388)
T 1b9h_A 14 QYDDAERNGLVRALEQGQ---W----WRMGGDEVNSFER----EFAAHHGAAHALAVT-NGTHALELALQVMGVGPGTEV 81 (388)
T ss_dssp CCCHHHHHHHHHHHHTSC---C----BTTTCSHHHHHHH----HHHHHTTCSEEEEES-CHHHHHHHHHHHTTCCTTCEE
T ss_pred CCCHHHHHHHHHHHHcCC---e----eecCCHHHHHHHH----HHHHHhCCCeEEEeC-CHHHHHHHHHHHcCCCCcCEE
Confidence 455789999888885310 1 1233444555555 888999988777777 8899999999999 8999999
Q ss_pred EEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcC
Q psy13354 117 MGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNIN 194 (1342)
Q Consensus 117 lv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~g 194 (1342)
+++...|++. ...+...|. +++.+++++ ++.+|++++++++++ ++++|+ +.|.. ...++++|.++|++||
T Consensus 82 i~~~~~~~~~---~~~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~--~~n~tG~~~~l~~i~~la~~~~ 153 (388)
T 1b9h_A 82 IVPAFTFISS---SQAAQRLGA--VTVPVDVDAATYNLDPEAVAAAVTP-RTKVIM--PVHMAGLMADMDALAKISADTG 153 (388)
T ss_dssp EEESSSCTHH---HHHHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEEC--CBCGGGCCCCHHHHHHHHHHHT
T ss_pred EECCCccHHH---HHHHHHcCC--EEEEEecCCCcCCCCHHHHHHhcCc-CceEEE--EeCCccCcCCHHHHHHHHHHcC
Confidence 9877665544 445566677 455556664 478999999998864 445555 33333 5569999999999999
Q ss_pred CEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCeeEEEEech-h--HHHHhhccCC--------c---cc
Q psy13354 195 SYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRGGFILMKKK-Y--KKIINSAVFP--------G---IQ 258 (1342)
Q Consensus 195 i~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~GG~iv~~~~-l--~~~l~~~~~~--------~---~~ 258 (1342)
++||+|++|+.|....+.....+. |+.++||| |+++|+.||+++++++ + .+.+...... + ..
T Consensus 154 ~~li~D~a~~~g~~~~~~~~~~~~--~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (388)
T 1b9h_A 154 VPLLQDAAHAHGARWQGKRVGELD--SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIA 231 (388)
T ss_dssp CCBCEECTTCTTCEETTEEGGGSS--SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSC
T ss_pred CEEEEecchhcCCccCCeeccccc--ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecc
Confidence 999999999877654322222222 55566655 8887777799999885 5 5555322110 0 01
Q ss_pred cC--CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-----CCCCeEEEEEccCCC--CCHH
Q psy13354 259 GG--PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSG-----GTKSHIILVDLRNKK--ITGK 328 (1342)
Q Consensus 259 ~~--~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-----~~~~~~v~i~~~~~~--~~~~ 328 (1342)
++ ..++..+++... .+ +.+++..+++.++++++.+.|.+. |+.+... +..++++|+.+++.. ...+
T Consensus 232 g~~~~~~~~~~a~~~~---~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (388)
T 1b9h_A 232 GSNMRLNEFSASVLRA---QL-ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNA 307 (388)
T ss_dssp CCBCBCBHHHHHHHHH---HH-TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHH
T ss_pred cccCCcCHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHH
Confidence 11 123333333222 22 256667888899999999999986 7776542 234678999987531 2334
Q ss_pred HHHHHHHHCCceeeeccCCC
Q psy13354 329 IAESILESANIICNKNSIPN 348 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~ 348 (1342)
+...+. ++||.+.+++.|.
T Consensus 308 l~~~L~-~~gI~v~~~~~~~ 326 (388)
T 1b9h_A 308 LVDRLV-EAGLPAFAAFRAI 326 (388)
T ss_dssp HHHHHH-HTTCCEEECCCCG
T ss_pred HHHHHH-HCCCCcccccCcc
Confidence 555555 5699998865543
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-18 Score=205.76 Aligned_cols=332 Identities=11% Similarity=-0.023 Sum_probs=203.0
Q ss_pred cCce-eeeecCCCCcHHHHHHHhHHHHhcccc---CC--CC----CCccCCcchHHHHHHHHHHHHHHHhCCC---CceE
Q psy13354 27 NNNI-ELIASENYTSLAVMEAQGTLLTNKYAE---GY--PG----KRYYGGCKFIDLIEKIAINRLKKIFNAE---AANV 93 (1342)
Q Consensus 27 ~~~i-~l~a~~n~l~~~v~eal~~~l~~~~~~---g~--~~----~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi 93 (1342)
.+.+ .|..+.+..+|.+.+++.+++.+.+.. +. +. ...|....+..++++++++++.+.+|.. +.++
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~ 110 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIA 110 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred chhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEE
Confidence 4667 787887777777667666665433221 00 10 1224445556788998888887776643 5566
Q ss_pred ecCCHHHHHHHHHHHccCCCC--------------EEEEe-eccCCccchhhH---HhhhCCceeEEEEecCCC-----C
Q psy13354 94 QPHSGSQANQAVFFSVLNPGD--------------TIMGM-SLQEGGHLTHGM---MLNMSGKWFNSICYGLNK-----K 150 (1342)
Q Consensus 94 ~~~sGs~A~~~al~al~~pGD--------------~Vlv~-~~~~~~~~s~~~---~~~~~g~~~~~v~~~~~~-----~ 150 (1342)
+++||++|+..++.+++.+|| +|+++ .+.++++..... .+...|. .+++++.++ +
T Consensus 111 ~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~ 188 (444)
T 3if2_A 111 LTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLP--HIDEVTHDGEEGFFK 188 (444)
T ss_dssp EESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCC--EEEEEEETTEEEEEE
T ss_pred EecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCc--eEEecccccccCccc
Confidence 666999999999999999998 78764 555554433211 1222333 555556553 2
Q ss_pred CCCCHHHHHHHHH--hcCCeEEEEcCCCCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcC--CCCCCCCCCc
Q psy13354 151 EKIDYKKVEYLAK--KNKPKLIIAGASAYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAG--EYPNPVPFAD 221 (1342)
Q Consensus 151 ~~id~e~Le~~i~--~~~~~liv~~~s~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~--~~~~~l~~~D 221 (1342)
+.+|++++++++. ..+++++++++++|| ...+ +++|+++|++||++||+|++|+.+..... .........+
T Consensus 189 ~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 268 (444)
T 3if2_A 189 YRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNT 268 (444)
T ss_dssp EECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTE
T ss_pred cCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCE
Confidence 4789999998742 234566666555555 3335 89999999999999999999975321110 0000112357
Q ss_pred EEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhcc--chHHH-HHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLK--PDFKI-YQKQVVKNAKIL 295 (1342)
Q Consensus 222 ivv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~--~~~~~-~~~~l~~~a~~l 295 (1342)
++++|+||+. +.| ||+++++++++.+......+.++.+ ...+.++...+ .... ....+ ..+.+.++++.+
T Consensus 269 i~~~S~sK~~--~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~a~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
T 3if2_A 269 ILCFSLSKIG--LPGMRTGIIVADAKVIEAVSAMNAVVNLAPT-RFGAAIATPLV-ANDRIKQLSDNEIKPFYQKQATLA 344 (444)
T ss_dssp EEEEESTTTT--CGGGCCEEEECCHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHH-HTSHHHHHHHHTHHHHHHHHHHHH
T ss_pred EEEechhhcc--CCCCceEEEEECHHHHHHHHHHHHhccCCCC-hHHHHHHHHHH-HcCchhHHHHHHHHHHHHHHHHHH
Confidence 8899999964 334 9999999988888764433333332 23333333222 2211 11222 455677777777
Q ss_pred HHHHHhC----CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCC----ccccccccccccc
Q psy13354 296 SKILDQR----GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEK----PYFTSGIRLGSSA 365 (1342)
Q Consensus 296 ~~~L~~~----g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~----~~~~~~lRi~~~~ 365 (1342)
.+.|.+. ++.+. .+..++++|+.++....+.+.+...+.++||.+.++..+..... ....+++|++++.
T Consensus 345 ~~~l~~~l~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~ 421 (444)
T 3if2_A 345 VKLLKQALGDYPLMIH-KPEGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA 421 (444)
T ss_dssp HHHHHHHSSSSSEEEE-CCCBSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS
T ss_pred HHHHHHhcccCCceEe-cCCccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC
Confidence 7777652 55554 34667899999886333444444445667999998765432210 1123579999986
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-17 Score=197.98 Aligned_cols=278 Identities=13% Similarity=0.095 Sum_probs=181.5
Q ss_pred HHHHHHHhHHHHhccccCCCCCCccC-CcchHHHHHHHHHHHH-HHHhC-CCCceEecCCHHHHHHHHHHHc-cCCCCEE
Q psy13354 41 LAVMEAQGTLLTNKYAEGYPGKRYYG-GCKFIDLIEKIAINRL-KKIFN-AEAANVQPHSGSQANQAVFFSV-LNPGDTI 116 (1342)
Q Consensus 41 ~~v~eal~~~l~~~~~~g~~~~~~~~-~~~~~~~Le~~~~~~l-a~~~g-~~~~vi~~~sGs~A~~~al~al-~~pGD~V 116 (1342)
+.+++++.+.+.+.+ +. .++...++++ .+ ++++| .+++++++ ||++|+..++.++ ++|||+|
T Consensus 16 ~~i~~a~~~~~~~~~---------~~~~~~~~~~l~~----~~~a~~~g~~~~~v~~~-sgt~al~~al~~l~~~~Gd~V 81 (377)
T 3ju7_A 16 IEYLDELKEIDASHI---------YTNYGPINQRFEQ----TIMSGFFQNRGAVTTVA-NATLGLMAAIQLKKRKKGKYA 81 (377)
T ss_dssp GGGHHHHHHHHHHTC---------CSSSCHHHHHHHH----HHHHHTSTTCSEEEEES-CHHHHHHHHHHHHSCTTCCEE
T ss_pred HHHHHHHHHHHHcCC---------cccCCHHHHHHHH----HHHHHHhCCCCeEEEeC-CHHHHHHHHHHHcCCCCcCEE
Confidence 347888888875321 22 2344555555 88 99999 56666666 9999999999998 8999999
Q ss_pred EEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcC--CeEEEEcCCCCCcccCHHHHHHHHHHc
Q psy13354 117 MGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNK--PKLIIAGASAYSQYIDFERFYHIAKNI 193 (1342)
Q Consensus 117 lv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~--~~liv~~~s~~~~~~~l~~I~~la~~~ 193 (1342)
+++.+.|++ ....+...|. +++.++.+ ++|.+|++++++++...+ +++|+.++ .++...++++|.++|+ |
T Consensus 82 i~~~~~~~~---~~~~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~~-~~G~~~~~~~i~~la~-~ 154 (377)
T 3ju7_A 82 LMPSFTFPA---TPLAAIWCGL--EPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPYA-TFGSWMNLEEYEELEK-K 154 (377)
T ss_dssp EEESSSCTH---HHHHHHHTTC--EEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCBC-GGGBCCCCHHHHHHHH-T
T ss_pred EECCCCcHH---HHHHHHHcCC--EEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEEC-CCCCccCHHHHHHHHh-c
Confidence 988866654 4445566677 55555666 578999999999883323 55555322 2345669999999999 9
Q ss_pred CCEEEEEcccchhhhhcCCCC-CCCCCCcEEEec--CCccCCCCCeeEEEEec-hhHHHHhhccCCc----------ccc
Q psy13354 194 NSYFMVDMAHYAGLIAAGEYP-NPVPFADFITST--THKSLRGPRGGFILMKK-KYKKIINSAVFPG----------IQG 259 (1342)
Q Consensus 194 gi~LIvDea~~~g~~~~~~~~-~~l~~~Divv~S--~sK~l~gp~GG~iv~~~-~l~~~l~~~~~~~----------~~~ 259 (1342)
|++||+|++|++|....+... ..+ .|+.++| .+|+++++.||++++++ ++.+.++.....+ .++
T Consensus 155 ~~~vi~D~a~a~g~~~~~~~~g~~~--~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~ 232 (377)
T 3ju7_A 155 GVPVVVDAAPGFGLMNGGMHYGQDF--SGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFN 232 (377)
T ss_dssp TCCBEEECTTCTTCEETTEETTTTC--SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCB
T ss_pred CCEEEEECCCccCCeECCEeccCCC--CcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCCceeecccc
Confidence 999999999998865443322 122 3565555 56999666668888765 5666665433211 122
Q ss_pred CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC---cEEeeCCC--CC-eEEEEEccCCCCCHHHHHHH
Q psy13354 260 GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG---IRIVSGGT--KS-HIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 260 ~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g---~~~~~~~~--~~-~~v~i~~~~~~~~~~~~~~l 333 (1342)
....+..+++..+..+ .++...++..++++++.+.|.+.+ +.+..... .. .++.+.+++. .+.+.+...
T Consensus 233 ~~~~~~~aa~~~~~l~----~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 307 (377)
T 3ju7_A 233 CKMSEYAAAIGIATMK----KWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEE-VRNKQVIED 307 (377)
T ss_dssp CCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTT-SCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCCh-hhHHHHHHH
Confidence 2334444444434332 455677888899999999998864 22222111 11 2334554432 245666777
Q ss_pred HHHCCceeeeccC
Q psy13354 334 LESANIICNKNSI 346 (1342)
Q Consensus 334 l~~~GI~v~~~~~ 346 (1342)
|+++||.++..+.
T Consensus 308 L~~~gI~~~~~~~ 320 (377)
T 3ju7_A 308 LKKQKIEARLYFS 320 (377)
T ss_dssp HHTTTBCCBCTTS
T ss_pred HHHCCCceecccC
Confidence 7777999987654
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-17 Score=202.77 Aligned_cols=285 Identities=11% Similarity=0.045 Sum_probs=195.7
Q ss_pred CCcchHHHHHHHHHHHHHHHhCCC---Cce--EecCCHHHHHHHHHHHccCCC--------CEEEEeeccCCccchhhHH
Q psy13354 66 GGCKFIDLIEKIAINRLKKIFNAE---AAN--VQPHSGSQANQAVFFSVLNPG--------DTIMGMSLQEGGHLTHGMM 132 (1342)
Q Consensus 66 ~~~~~~~~Le~~~~~~la~~~g~~---~~v--i~~~sGs~A~~~al~al~~pG--------D~Vlv~~~~~~~~~s~~~~ 132 (1342)
...+...++++++++++++++|.+ +.+ ++++||++|+..++.++..+| |+|++....| .+....
T Consensus 132 ~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~---~~~~~~ 208 (514)
T 3mad_A 132 DLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAH---AAFDKA 208 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSC---THHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccc---hHHHHH
Confidence 345567789999999999999987 454 666699999999999998776 9999776544 445555
Q ss_pred hhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhh-
Q psy13354 133 LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIA- 209 (1342)
Q Consensus 133 ~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~- 209 (1342)
+...|. .++.++.++++.+|++++++++++ ++++|++++++++ ...++++|+++|++||++||+|++|+.+...
T Consensus 209 ~~~~G~--~v~~v~~~~~~~~d~~~Le~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~ 285 (514)
T 3mad_A 209 AQYFGI--KLVRTPLDADYRADVAAMREAITP-NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPW 285 (514)
T ss_dssp HHHHTC--EEEEECBCTTSCBCHHHHHHHCCT-TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHH
T ss_pred HHHcCC--eeEEeeeCCCCCCCHHHHHHHhcc-CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchh
Confidence 566677 455557777899999999999876 4566666666665 4558999999999999999999999865431
Q ss_pred ---cCC----CCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc----------CCccccCCcHHHHHHHHH
Q psy13354 210 ---AGE----YPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV----------FPGIQGGPLMHVIAAKAV 271 (1342)
Q Consensus 210 ---~~~----~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~----------~~~~~~~~~~~~~~Aaa~ 271 (1342)
.+. +......+|++++|+||++.++.| |+++++++......... .....++.......++.+
T Consensus 286 ~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~a 365 (514)
T 3mad_A 286 AERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWA 365 (514)
T ss_dssp HHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHH
T ss_pred HHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHH
Confidence 111 111122469999999999767766 99988886544322110 011123333333445555
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCC
Q psy13354 272 AFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDP 350 (1342)
Q Consensus 272 al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~ 350 (1342)
++......++++..+++.++++++.+.|.+. |+++..++ ..++++.... ....++...++ ++||.+....+
T Consensus 366 al~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~~~-~~~~~l~~~L~-~~Gi~v~g~~~---- 437 (514)
T 3mad_A 366 AMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP--LWVIAVASDE-LNIYQVMEEMA-GRGWRLNGLHR---- 437 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--SSEEEEECSS-SCHHHHHHHHH-TTTCBCEEETT----
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--eEEEEEeCCC-CCHHHHHHHHH-hcCCEeccCCC----
Confidence 5544444567888999999999999999986 78875533 4466776532 22345555555 45998843321
Q ss_pred CCccccccccccccccccc
Q psy13354 351 EKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 351 ~~~~~~~~lRi~~~~~~t~ 369 (1342)
+..+|++++..++.
T Consensus 438 -----~~~~Ri~~~~~~~~ 451 (514)
T 3mad_A 438 -----PPAFHVALTLRHTE 451 (514)
T ss_dssp -----TTEEEEECCGGGGS
T ss_pred -----CCeEEEEEecCCCC
Confidence 23589988866553
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-17 Score=194.49 Aligned_cols=287 Identities=15% Similarity=0.128 Sum_probs=186.4
Q ss_pred eeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc--
Q psy13354 32 LIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 32 l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-- 109 (1342)
+..+...+++.+++++.+.+... ++...+...++++ .+++++|.+++++++ +||+|+..++.++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~~l~~----~la~~~~~~~~i~~~-sGt~a~~~al~~~~~ 71 (390)
T 3b8x_A 6 YPLASSTWDDLEYKAIQSVLDSK---------MFTMGEYVKQYET----QFAKTFGSKYAVMVS-SGSTANLLMIAALFF 71 (390)
T ss_dssp BCSCCCCCCHHHHHHHHHHHHHT---------CCSSCHHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHHHTTS
T ss_pred ccCCCCCCCHHHHHHHHHHHHcC---------CCCCChHHHHHHH----HHHHHHCCCcEEEEC-CHHHHHHHHHHHHHh
Confidence 33467788999999988887531 1223344445555 888899988665555 9999999999998
Q ss_pred -----cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCH
Q psy13354 110 -----LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183 (1342)
Q Consensus 110 -----~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l 183 (1342)
+.+||+|+++...|++. ...+...|. +++.++.++ ++.+|++++++.+++ +++++++++ .++.+.++
T Consensus 72 ~~~~~~~~g~~Vi~~~~~~~~~---~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~g~~~~~ 144 (390)
T 3b8x_A 72 TKKPRLKKGDEIIVPAVSWSTT---YYPLQQYGL--RVKFVDIDINTLNIDIESLKEAVTD-STKAILTVN-LLGNPNNF 144 (390)
T ss_dssp SSSCSCCTTCEEEEESSSCHHH---HHHHHHTTC--EEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEEC-GGGCCCCH
T ss_pred hhhcCCCCcCEEEECCCCcHHH---HHHHHHcCC--EEEEEecCccccCcCHHHHHHHhCc-CCeEEEEEC-CccChhhH
Confidence 78999999887665544 444455676 555556664 488999999998875 455555542 23345799
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEec--CCccCCCCCeeEEEEec-hhHHHHhhccCCc----
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITST--THKSLRGPRGGFILMKK-KYKKIINSAVFPG---- 256 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S--~sK~l~gp~GG~iv~~~-~l~~~l~~~~~~~---- 256 (1342)
++|.++|++||++||+|++|+.|....+...+. ..|+.++| .+|.+.++.||++++++ ++.+.++......
T Consensus 145 ~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~--~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~ 222 (390)
T 3b8x_A 145 DEINKIIGGRDIILLEDNCESMGATFNNKCAGT--FGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRN 222 (390)
T ss_dssp HHHHHHHTTSCCEEEEECTTCTTCEETTEETTS--SSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBSTT
T ss_pred HHHHHHHHHcCCEEEEECcCcccCEECCccccc--ccceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999876543221221 13555544 35667566779999987 5655544321110
Q ss_pred -------------------------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCC
Q psy13354 257 -------------------------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGG 310 (1342)
Q Consensus 257 -------------------------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~ 310 (1342)
.++....+..++++.+.. +.+++..++..++++++.+.|.+. |+.+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l----~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 298 (390)
T 3b8x_A 223 LPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL----KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQET 298 (390)
T ss_dssp SCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCC
T ss_pred ccccccccccccccccccccceeccccccCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCC
Confidence 011112333343333322 255677888899999999999886 67764322
Q ss_pred --CCCeEEEEEccCC-CCCHHHHHHHHHHCCceeeecc
Q psy13354 311 --TKSHIILVDLRNK-KITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 311 --~~~~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
...+.+++.++.. +.+.+.+...|.++||.+++.+
T Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~ 336 (390)
T 3b8x_A 299 GESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIV 336 (390)
T ss_dssp SBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCST
T ss_pred CCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeec
Confidence 1223456666532 2244555555566799998654
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-18 Score=207.62 Aligned_cols=291 Identities=11% Similarity=0.059 Sum_probs=196.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCCCc-----------eEecCCHHHHHHHHHHHccC-------------------CCC
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAEAA-----------NVQPHSGSQANQAVFFSVLN-------------------PGD 114 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~~~-----------vi~~~sGs~A~~~al~al~~-------------------pGD 114 (1342)
|...+...++|+++.+++++++|.+.. .++++|||+|+..++.+... +++
T Consensus 110 ~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~ 189 (481)
T 4e1o_A 110 WASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARL 189 (481)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTE
T ss_pred cCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCe
Confidence 456778889999999999999998743 35566999999998887632 567
Q ss_pred EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-----CeEEEEcCCCCC--cccCHHHHH
Q psy13354 115 TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-----PKLIIAGASAYS--QYIDFERFY 187 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-----~~liv~~~s~~~--~~~~l~~I~ 187 (1342)
.|+++. .+|.+....+...|. +++.++.++++.+|+++|++++++.+ +.+++.+.++++ ...|+++|+
T Consensus 190 ~v~~s~---~~H~s~~~~~~~~g~--~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~ 264 (481)
T 4e1o_A 190 VAYASD---QAHSSVEKAGLISLV--KMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELG 264 (481)
T ss_dssp EEEEET---TSCHHHHHHHHHHTC--EEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHH
T ss_pred EEEEcC---cchHHHHHHHHhCCC--ceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHH
Confidence 888666 455555655566666 55556777889999999999997642 454554443333 556999999
Q ss_pred HHHHHcCCEEEEEcccchhhhhcCCCCCC---CCCCcEEEecCCccCCCCCe-eEEEEech-hHHHHhhccCCcccc---
Q psy13354 188 HIAKNINSYFMVDMAHYAGLIAAGEYPNP---VPFADFITSTTHKSLRGPRG-GFILMKKK-YKKIINSAVFPGIQG--- 259 (1342)
Q Consensus 188 ~la~~~gi~LIvDea~~~g~~~~~~~~~~---l~~~Divv~S~sK~l~gp~G-G~iv~~~~-l~~~l~~~~~~~~~~--- 259 (1342)
++|++||+|+++|+||+.+.+....+... ++.+|++++++|||+++|.| |+++.++. ...........+...
T Consensus 265 ~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~ 344 (481)
T 4e1o_A 265 PICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS 344 (481)
T ss_dssp HHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTT
T ss_pred HHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCccc
Confidence 99999999999999998775433222111 22469999999999988888 77777653 222111111111110
Q ss_pred ------------CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCC-C
Q psy13354 260 ------------GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKK-I 325 (1342)
Q Consensus 260 ------------~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~-~ 325 (1342)
++......++.+++.....++++++.++..++++++.+.|.+. |+++.. ++..+++++.+++.. .
T Consensus 345 ~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~-~~~~~~v~f~~~~~~~~ 423 (481)
T 4e1o_A 345 GVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPA-KRHLGLVVFRLKGPNSL 423 (481)
T ss_dssp TTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCS-CCCSSEEEEEESSCHHH
T ss_pred CCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CCceeEEEEEeCCchHH
Confidence 1101123334444444444578888999999999999999986 888754 345678888886432 2
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.++...+.++..+++.+.... + ...+|++++..++
T Consensus 424 ~~~l~~~L~~~g~~~~~~~~~~----g---~~~lR~~~~~~~t 459 (481)
T 4e1o_A 424 TENVLKEIAKAGRLFLIPATIQ----D---KLIIRFTVTSQFT 459 (481)
T ss_dssp HHHHHHHHHHHCSSBCEEEEET----T---EEEEEEECCCTTC
T ss_pred HHHHHHHHHhCCeEEEEeeEEC----C---EEEEEEEeCCCCC
Confidence 4567777777744565543221 1 3579999876654
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-18 Score=205.36 Aligned_cols=123 Identities=23% Similarity=0.344 Sum_probs=112.3
Q ss_pred eEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe---------CC----CCCChHHHhccEEEEEEcCCCHHHHHHHH
Q psy13354 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT---------TE----PQKIPITVLSRCIQFNLKKMLHHDIVNNL 567 (1342)
Q Consensus 501 rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t---------~~----~~kl~~~L~sR~~~i~~~~l~~~el~~~l 567 (1342)
+|++|||+|.|+.+++++|++.+|+|+.+ +||+++ ++ +.+++++|+|||..+.|.+++.+++.+||
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 69999999999999999999999999988 688888 55 77899999999999999999999999999
Q ss_pred HHHHHhcCCCcchhHHHHHHHhc-CCcHHHHHHHHHHHHhhc----CCCCCHHHHHHHhccC
Q psy13354 568 CYILNKENIKFETSALNLIATGA-QGSMRDALSLTDQAINYS----SEKITLNSMQEMLSII 624 (1342)
Q Consensus 568 ~~~~~~~g~~i~~~al~~La~~~-~g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~~ 624 (1342)
+.+++.+++.++++++.++++.+ .|++|.++++++++..++ ...||.++|++++...
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 99999999999999999999999 999999999999986554 3469999999988654
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-18 Score=209.43 Aligned_cols=277 Identities=13% Similarity=0.177 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHccCCCCE---EEEeeccCCccchhh-HHhhhCCceeE---EEEe
Q psy13354 74 IEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLNPGDT---IMGMSLQEGGHLTHG-MMLNMSGKWFN---SICY 145 (1342)
Q Consensus 74 Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~~pGD~---Vlv~~~~~~~~~s~~-~~~~~~g~~~~---~v~~ 145 (1342)
+.+.+++++++++|++ +.+++++|+++++..++.+++.|||. |++....|++....+ ..+...|..+. +...
T Consensus 112 ~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~ 191 (465)
T 3e9k_A 112 GDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIK 191 (465)
T ss_dssp TTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEEC
T ss_pred hHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEe
Confidence 3445667999999987 56677779999999999999876655 998876665533322 24556676432 2223
Q ss_pred cCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--C
Q psy13354 146 GLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--F 219 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~ 219 (1342)
+.++++.+|++++++++.++ ++++|++++++|+ ...++++|.++|++||++||+|++|+.|.... .+. .
T Consensus 192 ~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~-----~~~~~~ 266 (465)
T 3e9k_A 192 PREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVEL-----YLHDWG 266 (465)
T ss_dssp CCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC-----CHHHHT
T ss_pred cCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCC-----chhhcC
Confidence 55667889999999999742 4567777665555 55599999999999999999999998776511 111 3
Q ss_pred CcEEEecCCccCC-CCCe-eEEEEechhHHHHhhccCCc------------------------cccCCcHHHHHHHHHHH
Q psy13354 220 ADFITSTTHKSLR-GPRG-GFILMKKKYKKIINSAVFPG------------------------IQGGPLMHVIAAKAVAF 273 (1342)
Q Consensus 220 ~Divv~S~sK~l~-gp~G-G~iv~~~~l~~~l~~~~~~~------------------------~~~~~~~~~~~Aaa~al 273 (1342)
+|++++|+||+++ ||.| |++++++++.+.+......| ..++++....+++.+++
T Consensus 267 ~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal 346 (465)
T 3e9k_A 267 VDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASL 346 (465)
T ss_dssp CCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHH
T ss_pred CCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHH
Confidence 6999999999995 6777 99999988766554322211 11255555566655555
Q ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHh-----------CCcEEeeCCC---CCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 274 KEVLKPDFKIYQKQVVKNAKILSKILDQ-----------RGIRIVSGGT---KSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 274 ~~~l~~~~~~~~~~l~~~a~~l~~~L~~-----------~g~~~~~~~~---~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
......++++++++..++++++.+.|.+ .|+++..+.. .+.++++.++. ...++...+.+ +||
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~--~~~~l~~~L~~-~Gi 423 (465)
T 3e9k_A 347 EIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV--PNKDVFQELEK-RGV 423 (465)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC--TTCCHHHHHHT-TTE
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC--CHHHHHHHHHH-CCE
Confidence 5443335788899999999999999988 5788765321 25677777762 23355666654 599
Q ss_pred eeeeccCCCCCCCccccccccccc-ccccc
Q psy13354 340 ICNKNSIPNDPEKPYFTSGIRLGS-SAITT 368 (1342)
Q Consensus 340 ~v~~~~~p~~~~~~~~~~~lRi~~-~~~~t 368 (1342)
.+... .++.+|+++ +..++
T Consensus 424 ~v~~~----------~~~~iRis~~~~~~t 443 (465)
T 3e9k_A 424 VCDKR----------NPNGIRVAPVPLYNS 443 (465)
T ss_dssp ECEEE----------TTTEEEEBCCTTTCC
T ss_pred EEecC----------CCCEEEEeCcccCCC
Confidence 98721 135799998 55554
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=195.07 Aligned_cols=296 Identities=11% Similarity=0.084 Sum_probs=192.1
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
+..|.+..+++++ ++.+.+++.+.+. .. .+|+. ..+ .++++ ++++++|.+ +.+++++||++|+.
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~-~~-~~y~~------~~~-~~lr~----~la~~~~~~~~~i~~t~g~~~al~ 81 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENLN-CI-RHYPE------PDA-GTLRQ----MLAKRNSVDNNAILVTNGPTAAFY 81 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTGG-GG-GSCCC------TTC-HHHHH----HHHHHTTCCGGGEEEESHHHHHHH
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhHh-HH-hcCCC------CcH-HHHHH----HHHHHhCcCHHHEEEcCCHHHHHH
Confidence 4668888887665 4558888877662 22 23332 111 34444 888899976 55666658888999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC-CCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL-NKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QY 180 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~-~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~ 180 (1342)
.++.++. ||+|++..+.+ ......+...|. +++.++. +++..+++ .+++++++++++|| ..
T Consensus 82 ~~~~~l~--gd~Vi~~~p~~---~~~~~~~~~~g~--~~~~v~~~~~~~~~~~---------~~~~~v~i~~p~nptG~~ 145 (350)
T 3fkd_A 82 QIAQAFR--GSRSLIAIPSF---AEYEDACRMYEH--EVCFYPSNEDIGEADF---------SNMDFCWLCNPNNPDGRL 145 (350)
T ss_dssp HHHHHTT--TCEEEEEESCC---HHHHHHHHHTTC--EEEEEETTSCGGGSCC---------TTCSEEEEESSCTTTCCC
T ss_pred HHHHHHC--CCEEEEeCCCc---HHHHHHHHHcCC--eEEEEecCCccccCcc---------CCCCEEEEeCCCCCcCCC
Confidence 9999988 99999777444 444555666777 4555565 43333444 34566666666665 44
Q ss_pred cCHHHHHHHHHHcC-CEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccC
Q psy13354 181 IDFERFYHIAKNIN-SYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 181 ~~l~~I~~la~~~g-i~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~ 254 (1342)
.+.++|.++++.++ .+||+|++|..............+ ..+++++|+||++ |+.| ||+++++++++.+.....
T Consensus 146 ~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~ 224 (350)
T 3fkd_A 146 LQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAY-GIPGLRIGYIVANKDFMKRVAAFST 224 (350)
T ss_dssp CCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHH-SCGGGCCEEEECCHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhc-cCcchheEeEEeCHHHHHHHHHhCC
Confidence 58888888888876 799999999754332211111111 2358899999999 5455 999999999999887544
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
.+ +++...+.++..++. ....+.+.. +++.++++++.+.|.+. |+.+. +..++++|+.++.. ...++...+
T Consensus 225 ~~---~~~~~~~~~~~~~l~-~~~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~~~L 296 (350)
T 3fkd_A 225 PW---AVNALAIEAAKFILI-HPAQFTLPI-RKWQRNTVDFITALNRLDGVEVH--PSGTTFFLLRLKKG-TAAELKKYM 296 (350)
T ss_dssp TT---CSCHHHHHHHHHHHH-CTTTTCCCH-HHHHHHHHHHHHHHHHSTTEEEC--CCSSSEEEEEESSS-CHHHHHHHH
T ss_pred CC---CCCHHHHHHHHHHHh-CHHHHHHHH-HHHHHHHHHHHHHHhcCCCcEEC--CCCCcEEEEECCCC-CHHHHHHHH
Confidence 33 333444444444443 322122333 33348899999999887 78763 35567788888765 455667777
Q ss_pred HHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++++||.+.++..++... .+++|++++
T Consensus 297 ~~~~gi~v~~g~~f~~~~----~~~iRis~~ 323 (350)
T 3fkd_A 297 LEEYNMLIRDASNFRGLD----ESYVRITTQ 323 (350)
T ss_dssp HHTTCEECEECTTSTTCC----TTEEEEECC
T ss_pred HHHCCEEEEeCccCCCCC----CCEEEEEcC
Confidence 664799999876554221 467999977
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=204.75 Aligned_cols=276 Identities=19% Similarity=0.157 Sum_probs=181.0
Q ss_pred HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEe--cCCHHHHHHHHHHHccCCCCEEEE
Q psy13354 41 LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQ--PHSGSQANQAVFFSVLNPGDTIMG 118 (1342)
Q Consensus 41 ~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~--~~sGs~A~~~al~al~~pGD~Vlv 118 (1342)
..+++++.+........+. .+.+..+......+++ .+++++|.+.++++ ++||++|+..++.++++|||+|++
T Consensus 32 ~~vl~a~~~~~~~~~~~~~-~~~~~y~~~~~~~Le~----~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~ 106 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHP-STGYGYDDEGRDTLER----VYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLY 106 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCC-CCTTCTTCHHHHHHHH----HHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEE
T ss_pred HHHHHHHHHhhhhhhccCC-CcCCCCChhHHHHHHH----HHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEE
Confidence 4577777765422211121 1122122333444554 89999999988873 449999999999999999999998
Q ss_pred ee-ccCCccchhh-------HHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC----CCCC--cccCHH
Q psy13354 119 MS-LQEGGHLTHG-------MMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA----SAYS--QYIDFE 184 (1342)
Q Consensus 119 ~~-~~~~~~~s~~-------~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~----s~~~--~~~~l~ 184 (1342)
.. ..+++..... ..+...|. ++..++.+++|.+|++++++++++ ++++|++++ ++++ ...+++
T Consensus 107 ~~~~~y~~~~~~~~~~g~~~~~l~~~G~--~~~~v~~~~~g~~d~e~l~~ai~~-~tklV~i~~s~g~p~nptg~v~~l~ 183 (409)
T 3jzl_A 107 ITGQPYDTLEEIVGIRKQGQGSLKDFHI--GYSSVPLLENGDVDFPRIAKKMTP-KTKMIGIQRSRGYADRPSFTIEKIK 183 (409)
T ss_dssp CSSSCCTTHHHHHTSSSSSSSCTGGGTC--EEEECCCCTTSCCCHHHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHH
T ss_pred eCCCCcHhHHHHHhcccchhhHHHHcCC--EEEEeCCCCCCCcCHHHHHHhccC-CCeEEEEECCCCCCCCCcCccccHH
Confidence 76 5555443222 23344455 566667777889999999999875 457777665 5555 444899
Q ss_pred HHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCC---CCeeEEEEechhHHHHhhccCC-cc
Q psy13354 185 RFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRG---PRGGFILMKKKYKKIINSAVFP-GI 257 (1342)
Q Consensus 185 ~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~g---p~GG~iv~~~~l~~~l~~~~~~-~~ 257 (1342)
+|+++|++ ||+++++|++|+.+... ..+.. .+|++++|+||+++| +.||++++++++++.+...... +.
T Consensus 184 ~I~~la~~~~~~~~livD~a~~~~~~~----~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~ 259 (409)
T 3jzl_A 184 EMIVFVKNINPEVIVFVDNCYGEFVEY----QEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGI 259 (409)
T ss_dssp HHHHHHHHHCTTCEEEEECTTCTTTSS----CCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHhhCCCCEEEEeCCccccccc----CCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccc
Confidence 99999999 99999999998765431 11222 379999999999955 4579999999999988763221 11
Q ss_pred -c-cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCe-----EEEEEccCCCCCHHHH
Q psy13354 258 -Q-GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSH-----IILVDLRNKKITGKIA 330 (1342)
Q Consensus 258 -~-~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~-----~v~i~~~~~~~~~~~~ 330 (1342)
. .++......++ .+.+. ....++++..+++.++.+.|++.|+++.+. .++ ++.+.+++......++
T Consensus 260 g~~~g~~~~~~~~~----l~gl~-~~~~r~~~~~~~a~~la~~L~~~g~~v~p~--~~~~~~~~i~~i~l~~~~~~~~~~ 332 (409)
T 3jzl_A 260 GREAGASLYSLLEM----YQGFF-LAPHVTAQAIKGARFTAAMLAEFGVEADPV--WDAPRTDLIQSVSFHNKEKMVAFA 332 (409)
T ss_dssp GGGCCCCTTCHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHTTCEEESC--TTSCCSSSCCEEECSCHHHHHHHH
T ss_pred cccccccHHHHHHH----HHHHh-hHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CCCCCccEEEEEEeCCHHHHHHHH
Confidence 1 11111111221 12121 344567888999999999999999988432 333 6777776433233455
Q ss_pred HHHHH
Q psy13354 331 ESILE 335 (1342)
Q Consensus 331 ~~ll~ 335 (1342)
+.+..
T Consensus 333 ~~L~~ 337 (409)
T 3jzl_A 333 QAIQA 337 (409)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-18 Score=204.34 Aligned_cols=289 Identities=14% Similarity=0.084 Sum_probs=186.5
Q ss_pred cCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHH
Q psy13354 27 NNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVF 106 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al 106 (1342)
...+.+.++++.+++.+++++.+.+... .|.......++++ .+++++|.+++++++ +|++|+..++
T Consensus 30 ~~~id~~~~~~~~~~~v~~a~~~~~~~~---------~y~~~~~~~~l~~----~la~~~~~~~~v~~~-~Gt~a~~~~l 95 (399)
T 2oga_A 30 VPFLDLKAAYEELRAETDAAIARVLDSG---------RYLLGPELEGFEA----EFAAYCETDHAVGVN-SGMDALQLAL 95 (399)
T ss_dssp BCSCCHHHHHHHTHHHHHHHHHHHHHHT---------CCSSSHHHHHHHH----HHHHHTTSSEEEEES-CHHHHHHHHH
T ss_pred CcccccCcCCCCCCHHHHHHHHHHHhcC---------CCCCchhHHHHHH----HHHHHHCCCeEEEec-CHHHHHHHHH
Confidence 4567777777777788999988877431 1222344444544 888999988665555 9999999999
Q ss_pred HHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHH
Q psy13354 107 FSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFE 184 (1342)
Q Consensus 107 ~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~ 184 (1342)
.++ +.+||+|+++...+++ ....+...|. +++.++.++ ++.+|++++++.+++ ++++|++++ ..+...+++
T Consensus 96 ~~~~~~~gd~vl~~~~~~~~---~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~n-~tG~~~~l~ 168 (399)
T 2oga_A 96 RGLGIGPGDEVIVPSHTYIA---SWLAVSATGA--TPVPVEPHEDHPTLDPLLVEKAITP-RTRALLPVH-LYGHPADMD 168 (399)
T ss_dssp HHTTCCTTCEEEEESSSCTH---HHHHHHHTTC--EEEEECBCSSSSSBCHHHHHHHCCT-TEEEECCBC-GGGCCCCHH
T ss_pred HHhCCCCcCEEEECCCccHH---HHHHHHHCCC--EEEEEecCCCCCCcCHHHHHHhcCC-CCeEEEEeC-CcCCccCHH
Confidence 999 8999999987765544 4455566677 445555554 578999999998875 456665432 223556899
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecC--CccCCCC-CeeEEEEe-chhHHHHhhccCCc----
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTT--HKSLRGP-RGGFILMK-KKYKKIINSAVFPG---- 256 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~--sK~l~gp-~GG~iv~~-~~l~~~l~~~~~~~---- 256 (1342)
+|.++|+++|++||+|++|+.|....+.... ...|++++|+ +|+++++ .||+++++ +++++.+.......
T Consensus 169 ~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~~ 246 (399)
T 2oga_A 169 ALRELADRHGLHIVEDAAQAHGARYRGRRIG--AGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQK 246 (399)
T ss_dssp HHHHHHHHHTCEECEECTTCTTCEETTEETT--CTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSST
T ss_pred HHHHHHHHcCCEEEEECcccccCccCCeecc--cccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCcccc
Confidence 9999999999999999999877433222111 1258999999 6999432 45898886 67777665422211
Q ss_pred ------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEE--EEccCCCCCH
Q psy13354 257 ------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIIL--VDLRNKKITG 327 (1342)
Q Consensus 257 ------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~--i~~~~~~~~~ 327 (1342)
.++...++..++++.+..+ .++...++..++++++.+.|.+. |+.+...+.....+| +.+.. ....
T Consensus 247 ~~~~~~g~~~~~~~~~~a~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 321 (399)
T 2oga_A 247 YSHETKGTNSRLDEMQAAVLRIRLA----HLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRT-ERRD 321 (399)
T ss_dssp TCCCSCCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEEC-SSHH
T ss_pred ccccccccCCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEEC-CCHH
Confidence 1111223344444333333 33445677778888999999875 666533233333333 22221 1233
Q ss_pred HHHHHHHHHCCceeeec
Q psy13354 328 KIAESILESANIICNKN 344 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~ 344 (1342)
++...+ .++||.+.+.
T Consensus 322 ~l~~~L-~~~gI~v~~~ 337 (399)
T 2oga_A 322 ELRSHL-DARGIDTLTH 337 (399)
T ss_dssp HHHHHH-HHTTBCCBCS
T ss_pred HHHHHH-HHCCCceecC
Confidence 445554 5569999864
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-17 Score=192.76 Aligned_cols=288 Identities=13% Similarity=0.124 Sum_probs=193.9
Q ss_pred CceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC---CC-CceEecCCHHHH
Q psy13354 28 NNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN---AE-AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g---~~-~~vi~~~sGs~A 101 (1342)
+.+.+..+.+. .++.+.+++.+.+......+|+ . ....++++ .++++++ .+ +.+++++||++|
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~-~~~~~lr~----~la~~~~~~~~~~~~v~~~~G~~~a 88 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYY------D-SPDEELIE----KILSYLDTDFLSKNNVSVGNGADEI 88 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCC------C-SSCHHHHH----HHHHHHTCSSCCGGGEEEESSHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCC------C-CchHHHHH----HHHHHcCCCCCCHHHEEEcCChHHH
Confidence 45778777764 4566888887766211111222 1 12345555 7777887 54 566666689999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--c
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--Q 179 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~ 179 (1342)
+..++.++ ||+|++. +.++ .....+...|. +++.++.++++.+|++++ .++++++++.++|| .
T Consensus 89 l~~~~~~~---gd~Vl~~-p~y~---~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l------~~~~~v~l~~p~nptG~ 153 (335)
T 1uu1_A 89 IYVMMLMF---DRSVFFP-PTYS---CYRIFAKAVGA--KFLEVPLTKDLRIPEVNV------GEGDVVFIPNPNNPTGH 153 (335)
T ss_dssp HHHHHHHS---SEEEECS-SSCH---HHHHHHHHHTC--EEEECCCCTTSCCCCCCC------CTTEEEEEESSCTTTCC
T ss_pred HHHHHHHh---CCcEEEC-CCcH---HHHHHHHHcCC--eEEEeccCCCCCCCHHHc------CCCCEEEEeCCCCCCCC
Confidence 99999998 8999955 4443 34444555666 556667766677888776 34677775565666 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~ 254 (1342)
..+.++|.++++..| ++|+||+|+.+.. ......++ ..+++++|+||++ |+.| ||+++++++++.+.....
T Consensus 154 ~~~~~~l~~l~~~~~-~li~De~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~l~~~~~ 229 (335)
T 1uu1_A 154 VFEREEIERILKTGA-FVALDEAYYEFHG--ESYVDFLKKYENLAVIRTFSKAF-SLAAQRVGYVVASEKFIDAYNRVRL 229 (335)
T ss_dssp CCCHHHHHHHHHTTC-EEEEECTTHHHHC--CCCGGGGGTCSSEEEEEESTTTT-TCGGGCCEEEEECHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHhCC-EEEEECcchhhcc--hhHHHHhhhCCCEEEEecchhhc-CCcccCeEEEEeCHHHHHHHHHhcC
Confidence 458999999999889 9999999975332 11111111 2468899999999 6566 999999999888876543
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
.+ +++.+.+.++..++.. . ++.++..+++.++++++.+.|.+.|+.+. +..++++|+.++. ....++...++
T Consensus 230 ~~---~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~ 301 (335)
T 1uu1_A 230 PF---NVSYVSQMFAKVALDH-R-EIFEERTKFIVEERERMKSALREMGYRIT--DSRGNFVFVFMEK-EEKERLLEHLR 301 (335)
T ss_dssp TT---CSCHHHHHHHHHHHHT-H-HHHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCCSSEEEEECCT-HHHHHHHHHHH
T ss_pred CC---CcCHHHHHHHHHHhCC-H-HHHHHHHHHHHHHHHHHHHHHHHCCcEEc--CCCCeEEEEECCC-CCHHHHHHHHH
Confidence 33 3445555555544433 2 36777888999999999999988777653 3456788988865 22345666666
Q ss_pred HHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+ +||.+.+. .+++|++++.
T Consensus 302 ~-~gi~v~~~-----------~~~iRis~~~ 320 (335)
T 1uu1_A 302 T-KNVAVRSF-----------REGVRITIGK 320 (335)
T ss_dssp H-HTEEEEEE-----------TTEEEEECCC
T ss_pred H-CCEEEEEC-----------CCeEEEEeCC
Confidence 5 59999871 3469999853
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=204.52 Aligned_cols=289 Identities=11% Similarity=0.034 Sum_probs=193.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCCC----------ceEecCCHHHHHHHHHHHcc-------------------CCCCE
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAEA----------ANVQPHSGSQANQAVFFSVL-------------------NPGDT 115 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~~----------~vi~~~sGs~A~~~al~al~-------------------~pGD~ 115 (1342)
|...+...++|+++.+++++++|.+. ..++++|||+|+..++.+.. .|++.
T Consensus 105 ~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~ 184 (475)
T 3k40_A 105 WIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 184 (475)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEE
T ss_pred ccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeE
Confidence 55678888999999999999999883 34566699999998888762 13467
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-----CeEEEEcC-CCCC-cccCHHHHHH
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-----PKLIIAGA-SAYS-QYIDFERFYH 188 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-----~~liv~~~-s~~~-~~~~l~~I~~ 188 (1342)
|+++. ..|.+....+...|. +++.+++++++ +|+++|++++.+.+ +.+++++. ++.. ...|+++|++
T Consensus 185 vi~s~---~~H~s~~~~~~~~g~--~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~ 258 (475)
T 3k40_A 185 GYCSD---QAHSSVERAGLLGGV--KLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGP 258 (475)
T ss_dssp EEEET---TSCHHHHHHHHHHTC--EEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred EEECC---CchHHHHHHHHHcCC--ceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHH
Confidence 88666 445555666666677 55556777788 99999999997642 44444443 3333 5569999999
Q ss_pred HHHHcCCEEEEEcccchhhhhcCCCCCC---CCCCcEEEecCCccCCCCCe-eEEEEech-hH-HHHhhccCCccc----
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAAGEYPNP---VPFADFITSTTHKSLRGPRG-GFILMKKK-YK-KIINSAVFPGIQ---- 258 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~~~~~~~---l~~~Divv~S~sK~l~gp~G-G~iv~~~~-l~-~~l~~~~~~~~~---- 258 (1342)
+|++||+|+++|+||+.+.+....+... +..+|++++++|||+++|.| |+++.++. .. +.+.. ...+..
T Consensus 259 la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~-~~~yl~~~~~ 337 (475)
T 3k40_A 259 VGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNV-DPLYLKHDMQ 337 (475)
T ss_dssp HHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------------
T ss_pred HHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcC-CccccCCCcC
Confidence 9999999999999998765533222111 22469999999999988888 77777653 22 22211 011110
Q ss_pred -----------cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCC-C
Q psy13354 259 -----------GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKK-I 325 (1342)
Q Consensus 259 -----------~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~-~ 325 (1342)
.++......++..++.....++++++.++..++++++.+.|.+. |+++..+ +..+++++.+++.. .
T Consensus 338 ~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~-~~~~iv~f~~~~~~~~ 416 (475)
T 3k40_A 338 GSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAE-INMGLVCFRLKGSNER 416 (475)
T ss_dssp -----------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSC-CBTTEEEEEESSCHHH
T ss_pred CCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC-CceEEEEEEeCCchHH
Confidence 11111123344445554455578888999999999999999996 8888653 45678888876432 2
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.++...+.++.++++.+..+. +...+|++++..++
T Consensus 417 ~~~l~~~L~~~g~~~~~~~~~~-------g~~~lR~~~~~~~t 452 (475)
T 3k40_A 417 NEALLKRINGRGHIHLVPAKIK-------DVYFLRMAICSRFT 452 (475)
T ss_dssp HHHHHHHHHHHTSCBCEEEEET-------TEEEEEEECCCTTC
T ss_pred HHHHHHHHHhCCcEEEEeeEEC-------CEEEEEEEeCCCCC
Confidence 4567777777755565543222 14579999876544
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.1e-18 Score=202.59 Aligned_cols=331 Identities=12% Similarity=-0.005 Sum_probs=194.4
Q ss_pred cCceeeeecCCCCcHHHHHHHhHHHHhccccCC--CCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENYTSLAVMEAQGTLLTNKYAEGY--PGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~--~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.+.|..+.+...+.+.+++.+++......+. .....|+...+..++++++++++.+.+|.. +.+++++||++|
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~a 110 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSA 110 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHH
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHH
Confidence 456888887766655544444443322111000 000124455667789998888887776643 556666699999
Q ss_pred HHHHHHHccCCCC-----EEEEe-eccCCccchhhHHh-hhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEc
Q psy13354 102 NQAVFFSVLNPGD-----TIMGM-SLQEGGHLTHGMML-NMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAG 173 (1342)
Q Consensus 102 ~~~al~al~~pGD-----~Vlv~-~~~~~~~~s~~~~~-~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~ 173 (1342)
+..++.+++.+|| +|+++ .+.++++....... ...+....+..++.+ .++.+|++.++ +.+ ++++++++
T Consensus 111 l~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~-~~~~v~~~ 187 (417)
T 3g7q_A 111 FFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGE-ETGMICVS 187 (417)
T ss_dssp HHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCT-TEEEEEEE
T ss_pred HHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--ccc-CceEEEEC
Confidence 9999999999987 88875 55554432222111 112233345544543 24567888887 333 45666666
Q ss_pred CCCCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcC--CCCCCCCCCcEEEecCCccCCCCCe---eEEEEec
Q psy13354 174 ASAYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAG--EYPNPVPFADFITSTTHKSLRGPRG---GFILMKK 243 (1342)
Q Consensus 174 ~s~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~--~~~~~l~~~Divv~S~sK~l~gp~G---G~iv~~~ 243 (1342)
+++|| ...+ +++|+++|++||++||+|++|+....... .........+++++|+||+ ++.| ||+++++
T Consensus 188 ~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~--~~~G~r~G~~~~~~ 265 (417)
T 3g7q_A 188 RPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSKL--GLPGSRCGIIIAND 265 (417)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGGG--TCTTSCCEEEECCH
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechhc--cCCCcceEEEEeCH
Confidence 66665 2224 99999999999999999999975321100 0001112357889999994 3444 9999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhcc--chHHH-HHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLK--PDFKI-YQKQVVKNAKILSKILDQR----GIRIVSGGTKSHII 316 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~--~~~~~-~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v 316 (1342)
++++.+......+.++++ ...+.++... .+... ....+ ..+++.++++.+.+.|.+. ++.+.. +..++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~ 342 (417)
T 3g7q_A 266 KTITAIANMNGIISLAPG-GMGPAMMCEM-IKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHK-PEGAIFL 342 (417)
T ss_dssp HHHHHHHHHHHHHCCCCC-SHHHHHHHHH-HHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEEC-CCBSSEE
T ss_pred HHHHHHHHhhcceeeCCC-cHHHHHHHHH-HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeC-CCcceEE
Confidence 998888764433333322 2333333333 33221 11222 4566777888888887762 566643 5678899
Q ss_pred EEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCc-c--ccccccccccc
Q psy13354 317 LVDLRNKKITGKIAESILESANIICNKNSIPNDPEKP-Y--FTSGIRLGSSA 365 (1342)
Q Consensus 317 ~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~-~--~~~~lRi~~~~ 365 (1342)
|+.++....+.+.+...+.++||.+.++..+...... + ..+++|++++.
T Consensus 343 ~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~ 394 (417)
T 3g7q_A 343 WLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP 394 (417)
T ss_dssp EEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS
T ss_pred EEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC
Confidence 9999864334444444446679999987544332110 0 13579999875
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-17 Score=197.28 Aligned_cols=292 Identities=15% Similarity=0.128 Sum_probs=187.3
Q ss_pred cCCCCcHHHHHHHhHHHHhccccC-CCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCC
Q psy13354 35 SENYTSLAVMEAQGTLLTNKYAEG-YPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNP 112 (1342)
Q Consensus 35 ~~n~l~~~v~eal~~~l~~~~~~g-~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~p 112 (1342)
..+.+++.+++++.+.+... ..+ ++ ...+. .++.+++++.+++++|.+++++++ ||++|+..++.++ +++
T Consensus 10 ~~~~~~~~~~~a~~~~~~~~-~~~~~~--~~~g~----~~l~~~l~~~la~~~g~~~~i~~~-~gt~al~~~~~~~~~~~ 81 (418)
T 2c81_A 10 EWPQHSDRTRRKIEEVFQSN-RWAISG--YWTGE----ESMERKFAKAFADFNGVPYCVPTT-SGSTALMLALEALGIGE 81 (418)
T ss_dssp CSSCCCHHHHHHHHHHHHHT-CCSTTS--BCCSS----CCHHHHHHHHHHHHHTCSEEEEES-CHHHHHHHHHHHTTCCT
T ss_pred CCCCCCHHHHHHHHHHHhcC-CccccC--cccCC----HHHHHHHHHHHHHHhCCCcEEEeC-CHHHHHHHHHHHcCCCC
Confidence 44567888999998888542 111 11 11122 234455666999999998665555 8999999999999 899
Q ss_pred CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHH
Q psy13354 113 GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAK 191 (1342)
Q Consensus 113 GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~ 191 (1342)
||+|+++...|++ ....+...|. +++.++.++ ++.+|++++++.+++ ++++|++++ ..+...++++|.++|+
T Consensus 82 gd~Vl~~~~~~~~---~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~~~~~~~i~~~~~ 154 (418)
T 2c81_A 82 GDEVIVPSLTWIA---TATAVLNVNA--LPVFVDVEADTYCIDPQLIKSAITD-KTKAIIPVH-LFGSMANMDEINEIAQ 154 (418)
T ss_dssp TCEEEEESSSCTH---HHHHHHHTTC--EEEEECBCTTTCSBCHHHHGGGCCT-TEEEECCBC-CTTCCCCHHHHHHHHH
T ss_pred cCEEEECCCccHh---HHHHHHHcCC--EEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEeC-CcCCcccHHHHHHHHH
Confidence 9999987755544 4445566677 455556664 788999999998865 456666543 2335569999999999
Q ss_pred HcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecC--CccCCCCCeeEEEEe-chhHHHHhhccCCcc-----------
Q psy13354 192 NINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTT--HKSLRGPRGGFILMK-KKYKKIINSAVFPGI----------- 257 (1342)
Q Consensus 192 ~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~--sK~l~gp~GG~iv~~-~~l~~~l~~~~~~~~----------- 257 (1342)
+||++||+|++|+.+....+.....+ .|+++.|| ||+++++.||+++++ +++++.+........
T Consensus 155 ~~~~~li~D~a~~~~~~~~~~~~~~~--~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (418)
T 2c81_A 155 EHNLFVIEDCAQSHGSVWNNQRAGTI--GDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMH 232 (418)
T ss_dssp HTTCEEEEECTTCTTCEETTEETTSS--SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCT
T ss_pred HCCCEEEEECcccccCccCCEecccc--cceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCcccccccccccc
Confidence 99999999999988753222212222 36777777 999944355999985 677666653221110
Q ss_pred -cc------------CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCC----C-eEEEE
Q psy13354 258 -QG------------GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTK----S-HIILV 318 (1342)
Q Consensus 258 -~~------------~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~----~-~~v~i 318 (1342)
+. ....+..+++... .+ +++++..++..++++++.+.|.+. |+++...+.+ . +++.+
T Consensus 233 ~~~~~~~~~~~~g~~~~~~~~~aa~~~~---~l-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~ 308 (418)
T 2c81_A 233 GDMQLVKKGDIQGSNYCLSEFQSAILLD---QL-QELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVF 308 (418)
T ss_dssp TCBSEEECCSSCCCBCCCCHHHHHHHHH---HH-TTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEE
T ss_pred chhhccccccccCcCCCcCHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEE
Confidence 10 0012222222211 12 256677888888999999999886 7877533332 2 24446
Q ss_pred EccC----CCCCHHHHHHHHHHCCce---eeeccCC
Q psy13354 319 DLRN----KKITGKIAESILESANII---CNKNSIP 347 (1342)
Q Consensus 319 ~~~~----~~~~~~~~~~ll~~~GI~---v~~~~~p 347 (1342)
.+++ .....++...+.+++||. +.+++.|
T Consensus 309 ~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p 344 (418)
T 2c81_A 309 RFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLP 344 (418)
T ss_dssp EECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCC
T ss_pred EEccccccccCHHHHHHHHHHcCCCCcccccccccc
Confidence 6653 222344555555444999 8876544
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=201.81 Aligned_cols=340 Identities=15% Similarity=0.094 Sum_probs=208.0
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCC-----CcHHHHHHHh--HHHHhccccCCCCCCcc-CCcchHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENY-----TSLAVMEAQG--TLLTNKYAEGYPGKRYY-GGCKFIDLIEKI 77 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~-----l~~~v~eal~--~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~ 77 (1342)
+++....+.++..+.....+ ...++|..+... .++.+.+++. +.+. . +. ....| +...+..++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~-~---~~-~~~~Yp~~~~g~~~lr~- 77 (423)
T 3ez1_A 5 EASRPALDLARQAYEAFKAR-GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRM-D---GL-DLRNYPGGVAGLPSARA- 77 (423)
T ss_dssp -CCHHHHHHHHHHHHHHHHH-TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEE-T---TE-ETTSSCSCTTCCHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhhcC-CceEecCCCCCChHhCCCcHHHHHHHhhhHHhh-c---ch-hhhCCCCCCCChHHHHH-
Confidence 35555666666666554333 355777776544 2334666654 2221 1 10 01223 34444556666
Q ss_pred HHHHHHHHhCCC-CceEecCCHHHHHH--HHHHHccC--C---------CCEEEEeeccCCccchhhHHhhhCCceeEEE
Q psy13354 78 AINRLKKIFNAE-AANVQPHSGSQANQ--AVFFSVLN--P---------GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSI 143 (1342)
Q Consensus 78 ~~~~la~~~g~~-~~vi~~~sGs~A~~--~al~al~~--p---------GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v 143 (1342)
.++++++.+ +.+++++||++++. .++.+++. | ||+|++..+.+ ......+...|..+ +
T Consensus 78 ---~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y---~~~~~~~~~~g~~~--~ 149 (423)
T 3ez1_A 78 ---LFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGY---DRHFLLLQTLGFEL--L 149 (423)
T ss_dssp ---HHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCC---HHHHHHHHHHTCEE--E
T ss_pred ---HHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCc---HHHHHHHHHcCCEE--E
Confidence 788888876 56667768888997 88888877 8 59999777544 44444556667744 4
Q ss_pred EecCCCCCCCCHHHHHHHHH-hcCCeEEEEc-CCCCC--ccc---CHHHHHHHH-HHcCCEEEEEcccchhhhhc-CC--
Q psy13354 144 CYGLNKKEKIDYKKVEYLAK-KNKPKLIIAG-ASAYS--QYI---DFERFYHIA-KNINSYFMVDMAHYAGLIAA-GE-- 212 (1342)
Q Consensus 144 ~~~~~~~~~id~e~Le~~i~-~~~~~liv~~-~s~~~--~~~---~l~~I~~la-~~~gi~LIvDea~~~g~~~~-~~-- 212 (1342)
+++.++++ +|+++++++++ ..++++|++. .++|| ... ++++|+++| ++||++||+||+|....+.. +.
T Consensus 150 ~v~~~~~g-~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~ 228 (423)
T 3ez1_A 150 TVDMQSDG-PDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAE 228 (423)
T ss_dssp EEEEETTE-ECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCC
T ss_pred eccCCCCC-CCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCC
Confidence 44554444 89999999996 3456666543 34555 222 455999999 99999999999998544433 11
Q ss_pred CCCC--------CCCCcEEEecCCccCC-CCCeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHH---hccch
Q psy13354 213 YPNP--------VPFADFITSTTHKSLR-GPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE---VLKPD 280 (1342)
Q Consensus 213 ~~~~--------l~~~Divv~S~sK~l~-gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~---~l~~~ 280 (1342)
..+. ....+++++|+||++. |...||+++++++++.+........+ +++...+.++..++.. ....+
T Consensus 229 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~ 307 (423)
T 3ez1_A 229 PVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSI-GPNKVEQARHVKFLTEYPGGLEGL 307 (423)
T ss_dssp CCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCS-CCCHHHHHHHHHHHHHSTTHHHHH
T ss_pred CcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHhhhcc-CCCHHHHHHHHHHHHhccchHHHH
Confidence 1111 1124688999999752 22339999999988888764333323 2334455555444444 11234
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----CC--cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee-ccCCCCCCCc
Q psy13354 281 FKIYQKQVVKNAKILSKILDQ----RG--IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK-NSIPNDPEKP 353 (1342)
Q Consensus 281 ~~~~~~~l~~~a~~l~~~L~~----~g--~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~-~~~p~~~~~~ 353 (1342)
+++..+.+.++++.+.+.|.+ .| +.+. .+..++++|+.++.. +.+.+..++.++||.+.+ +..+.... .
T Consensus 308 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~p~~g~~~~~~~~~~--~~~~~~~~l~~~gv~v~~~g~~~~~~~-~ 383 (423)
T 3ez1_A 308 MRDHAAIIAPKFRAVDEVLRAELGEGGEYATWT-LPKGGYFISLDTAEP--VADRVVKLAEAAGVSLTPAGATYPAGQ-D 383 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEEC-CCSBSSCEEEEESSS--CHHHHHHHHHHTTEECCCTTTTSSTTC-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEe-CCCccEEEEEECCCC--cHHHHHHHHHHCCcEEecCcccccCCC-C
Confidence 555566666666666666654 44 5543 356788999998764 355666667778999998 43333211 1
Q ss_pred ccccccccccccc
Q psy13354 354 YFTSGIRLGSSAI 366 (1342)
Q Consensus 354 ~~~~~lRi~~~~~ 366 (1342)
...+++|++++..
T Consensus 384 ~~~~~iRis~~~~ 396 (423)
T 3ez1_A 384 PHNRNLRLAPTRP 396 (423)
T ss_dssp SSSCEEEECCSSS
T ss_pred CCCCeEEEEcCCC
Confidence 1246799999754
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.6e-18 Score=199.68 Aligned_cols=284 Identities=15% Similarity=0.126 Sum_probs=185.1
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~a 108 (1342)
.+.+..+.+.+++ +.+++.+.+... .|...+...++++ .+++++|.+++++++ ||++|+..++.+
T Consensus 8 ~~~l~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~l~~----~la~~~~~~~~~~~~-~gt~a~~~~~~~ 72 (374)
T 3uwc_A 8 YSYLERQFADIEP-YLNDLREFIKTA---------DFTLGAELEKFEK----RFAALHNAPHAIGVG-TGTDALAMSFKM 72 (374)
T ss_dssp SCCHHHHTSSCHH-HHHHHHHHHHHT---------CCSSCHHHHHHHH----HHHHHTTCSEEEEES-CHHHHHHHHHHH
T ss_pred eeccccCCCCchH-HHHHHHHHHHcC---------CcccChhHHHHHH----HHHHHhCCCcEEEeC-CHHHHHHHHHHH
Confidence 4556667777777 888887776421 1333444455555 889999988665555 999999999999
Q ss_pred c-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHH
Q psy13354 109 V-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERF 186 (1342)
Q Consensus 109 l-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I 186 (1342)
+ +.+||+|+++...|+ +....+...|. +++.++.++++.+|++++++.+++ ++++++ +.|+. ...++++|
T Consensus 73 ~~~~~gd~v~~~~~~~~---~~~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~--~~n~~G~~~~~~~i 144 (374)
T 3uwc_A 73 LNIGAGDEVITCANTFI---ASVGAIVQAGA--TPVLVDSENGYVIDPEKIEAAITD-KTKAIM--PVHYTGNIADMPAL 144 (374)
T ss_dssp TTCCTTCEEEEESSSCH---HHHHHHHHTTC--EEEEECBCTTSSBCGGGTGGGCCT-TEEEEC--CBCGGGCCCCHHHH
T ss_pred cCCCCCCEEEECCCccH---HHHHHHHHcCC--EEEEEecCCCCCcCHHHHHHhCCC-CceEEE--EeCCcCCcCCHHHH
Confidence 9 999999998775554 44455566777 455556667788999999988865 455555 33333 45699999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCC-CCeeEEEEec-hhHHHHhhccCCc------
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRG-PRGGFILMKK-KYKKIINSAVFPG------ 256 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~g-p~GG~iv~~~-~l~~~l~~~~~~~------ 256 (1342)
.++|++||++||+|++|+.|.......... ..|++++|+| |++++ +.||++++++ ++.+.+.......
T Consensus 145 ~~~~~~~~~~li~D~~~~~g~~~~~~~~~~--~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
T 3uwc_A 145 AKIAKKHNLHIVEDACQTILGRINDKFVGS--WGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLINRDV 222 (374)
T ss_dssp HHHHHHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTE
T ss_pred HHHHHHcCCEEEEeCCCccCceeCCeeccc--cccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccccCc
Confidence 999999999999999998775433222222 2599999977 99955 3468888776 5655555432111
Q ss_pred ----cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEeeCCCCC----eEEEEEccCCCCC
Q psy13354 257 ----IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVSGGTKS----HIILVDLRNKKIT 326 (1342)
Q Consensus 257 ----~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~~~~~~----~~v~i~~~~~~~~ 326 (1342)
..+....+..+++.... . +.+++..++..++++++.+.|.+.+ +.+...+... +.+++... +
T Consensus 223 ~~~~~~~~~~~~~~aa~~~~~---~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 294 (374)
T 3uwc_A 223 CVEYGINCRMDTIQAVIANRL---M-NQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK----Y 294 (374)
T ss_dssp ESSCCCBCBCCHHHHHHHHHH---G-GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET----T
T ss_pred cccccccCCCCHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC----C
Confidence 11111223333332221 2 3566778888999999999998875 6553222211 12223322 3
Q ss_pred HHHHHHHHHHCCceeeecc
Q psy13354 327 GKIAESILESANIICNKNS 345 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~ 345 (1342)
.+.+...|.++||.+.+.+
T Consensus 295 ~~~l~~~L~~~gi~v~~~~ 313 (374)
T 3uwc_A 295 RDQLFQYLKDNGIEVKIHY 313 (374)
T ss_dssp HHHHHHHHHHTTBCCBCSC
T ss_pred HHHHHHHHHHCCCccccCC
Confidence 3444455555699998765
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=200.43 Aligned_cols=288 Identities=15% Similarity=0.028 Sum_probs=184.9
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH--HHHHHHccC--C----------CCEEEEeeccCCccch
Q psy13354 64 YYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN--QAVFFSVLN--P----------GDTIMGMSLQEGGHLT 128 (1342)
Q Consensus 64 ~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~--~~al~al~~--p----------GD~Vlv~~~~~~~~~s 128 (1342)
.|+...+..++++ .++++++.+ +.+++++|+++++ ..++.+++. | ||+|++..+.+ ..
T Consensus 73 ~Y~~~~g~~~lr~----~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y---~~ 145 (427)
T 3ppl_A 73 NYGGLDGIVDIRQ----IWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGY---DR 145 (427)
T ss_dssp SSCCSSCCHHHHH----HHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCC---HH
T ss_pred CCCCCCCcHHHHH----HHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCc---HH
Confidence 3444555667777 677777876 5666676888899 478888876 6 89999777544 44
Q ss_pred hhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEc-CCCCC--cccC---HHHHHHHH-HHcCCEEEEEc
Q psy13354 129 HGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAG-ASAYS--QYID---FERFYHIA-KNINSYFMVDM 201 (1342)
Q Consensus 129 ~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~-~s~~~--~~~~---l~~I~~la-~~~gi~LIvDe 201 (1342)
+...+...|..+ ++++.++++ +|++.++++++..+++++++. .++|| ...+ +++|+++| ++||++||+|+
T Consensus 146 ~~~~~~~~g~~~--~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De 222 (427)
T 3ppl_A 146 HFSITERFGFEM--ISVPMNEDG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDN 222 (427)
T ss_dssp HHHHHHHTTCEE--EEEEEETTE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEEC
T ss_pred HHHHHHHcCCEE--EEeCCCCCC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEEC
Confidence 455566777744 444555555 899999999864566777755 34555 2224 55999999 99999999999
Q ss_pred ccchhhhhcCCCC--CC--------CCCCcEEEecCCccCCCC-CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHH
Q psy13354 202 AHYAGLIAAGEYP--NP--------VPFADFITSTTHKSLRGP-RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKA 270 (1342)
Q Consensus 202 a~~~g~~~~~~~~--~~--------l~~~Divv~S~sK~l~gp-~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa 270 (1342)
+|+...+...... +. ....+++++||||++.++ ..||+++++++++.+........++ ++...+.++.
T Consensus 223 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~-~~~~~q~~~~ 301 (427)
T 3ppl_A 223 AYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIRGIG-PNKVNQLAHA 301 (427)
T ss_dssp TTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSC-CCHHHHHHHH
T ss_pred CCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcccCC-CCHHHHHHHH
Confidence 9976544332111 11 112468899999985222 2299999999888876643322222 3344444444
Q ss_pred HHHHH--hccchHHHHHHHHHHHHHHHHHHHHh----C-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 271 VAFKE--VLKPDFKIYQKQVVKNAKILSKILDQ----R-GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 271 ~al~~--~l~~~~~~~~~~l~~~a~~l~~~L~~----~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
.++.. ....++++.++.+.++++.+.+.|.+ . ++.+. .+.+++++|+.++.. +.+.+..++.++||.+.+
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~-~p~~g~~~~~~~~~~--~~~~~~~~l~~~gv~v~~ 378 (427)
T 3ppl_A 302 RYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWT-VPAGGYFISLDVVPG--TASRVAELAKEAGIALTG 378 (427)
T ss_dssp HHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEC-CCSBSSCEEEECSTT--CHHHHHHHHHHTTEECCC
T ss_pred HHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEe-CCCccEEEEEECCcc--hHHHHHHHHHHCCCEEec
Confidence 44332 12235666677777788877777755 2 35543 356788999999764 234445566677999988
Q ss_pred -ccCCCCCCCcccccccccccccc
Q psy13354 344 -NSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 344 -~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+..+.... ....+++|++++..
T Consensus 379 ~g~~~~~~~-~~~~~~~Ris~~~~ 401 (427)
T 3ppl_A 379 AGSSYPLRQ-DPENKNLRLAPSLP 401 (427)
T ss_dssp TTTTSGGGC-CTTSCEEEECCSSS
T ss_pred CcCcCCCCC-CCCCCeEEEECCCC
Confidence 33332110 01146799999654
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=199.73 Aligned_cols=311 Identities=12% Similarity=0.079 Sum_probs=193.7
Q ss_pred CceeeeecC--CCCc-----HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC----CCCceE-ec
Q psy13354 28 NNIELIASE--NYTS-----LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN----AEAANV-QP 95 (1342)
Q Consensus 28 ~~i~l~a~~--n~l~-----~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g----~~~~vi-~~ 95 (1342)
+.|++..+. |+.+ +.+.+++.....+.. ...|....+..++++++++++...+| .+++++ .+
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~------~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t 102 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKM------DKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQG 102 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTC------CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhccccc------ccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEec
Confidence 357777765 3322 236666655543111 12233344456788877777665545 234433 15
Q ss_pred CCHHHHHHHHHHHcc---CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh--cCCeEE
Q psy13354 96 HSGSQANQAVFFSVL---NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK--NKPKLI 170 (1342)
Q Consensus 96 ~sGs~A~~~al~al~---~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~--~~~~li 170 (1342)
+||++|+..++.++. +|||+|+++.+.++.+ ...+...|..+..+++..++++.+|++.+++.+.+ .+++++
T Consensus 103 ~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v 179 (401)
T 7aat_A 103 ISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNH---TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIIL 179 (401)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTH---HHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEE
T ss_pred CcchHHHHHHHHHHHHhccCCCEEEEcCCCchhH---HHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEE
Confidence 489999998887664 8999999887555544 44556667744444432234688999988887764 245777
Q ss_pred EEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcC--CCCC-----CCCCCcEEEecCCccCCCCCe--
Q psy13354 171 IAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAG--EYPN-----PVPFADFITSTTHKSLRGPRG-- 236 (1342)
Q Consensus 171 v~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~--~~~~-----~l~~~Divv~S~sK~l~gp~G-- 236 (1342)
++++++|| + ..++++|+++|++||+++|+||+|....+... ...+ ......++++|+||++ |+.|
T Consensus 180 ~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~R 258 (401)
T 7aat_A 180 LHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM-GLYGER 258 (401)
T ss_dssp EESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGC
T ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccc-ccccCc
Confidence 88777777 2 23689999999999999999999875443210 0000 0112358899999999 7777
Q ss_pred -eEEEE---ech----hHHHHhhccCCccccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 237 -GFILM---KKK----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 237 -G~iv~---~~~----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
||+++ +++ +...+......+.. ++....+.+++.++.+. ..+++++.++++.++++++.+.|.+.|
T Consensus 259 iG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 337 (401)
T 7aat_A 259 AGAFTVICRDAEEAKRVESQLKILIRPMYS-NPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337 (401)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEEeCCHHHHHHHHHHHHHHHHhccC-CCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99887 344 33444332222222 23333333333233111 023566778899999999999999876
Q ss_pred ----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 304 ----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 304 ----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+.+. .+..+++.|+.+ +.+.+..+++++||.+.+ .+|++++..++.
T Consensus 338 ~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~ll~~~gi~v~~--------------~~Ris~~~~~~~ 387 (401)
T 7aat_A 338 SSHNWQHI-TDQIGMFCFTGL-----KPEQVERLTKEFSIYMTK--------------DGRISVAGVASS 387 (401)
T ss_dssp CCSCCHHH-HHCCSSEEECCC-----CHHHHHHHHHHHCEECCT--------------TCEEEGGGCCTT
T ss_pred CCCCCcee-cCCcceEEecCC-----CHHHHHHHHHhCCEeccC--------------CCeEEeccCChh
Confidence 3332 245567777654 357778888888999862 268988876554
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=199.39 Aligned_cols=307 Identities=15% Similarity=0.098 Sum_probs=199.7
Q ss_pred ceeeeecC-CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 29 NIELIASE-NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 29 ~i~l~a~~-n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
.+.+..+. ...++.+.+++.+.+. .|..+ .+..++.+++++++++++|.+ +.+++++||++|+..++
T Consensus 15 ~i~l~~~~~~~~~~~v~~a~~~~~~-~~~~~----------~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~ 83 (359)
T 1svv_A 15 PYSFVNDYSVGMHPKILDLMARDNM-TQHAG----------YGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC 83 (359)
T ss_dssp CEECSCSCSSCCCHHHHHHHHHHTT-CCCCS----------TTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHH
T ss_pred eEEecCCCcCCCCHHHHHHHHHHHh-hcccc----------ccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHH
Confidence 45554443 3456669999888764 22111 112366777888999999976 34666669999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc------CCeEEEEcCCCCC-c
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN------KPKLIIAGASAYS-Q 179 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~------~~~liv~~~s~~~-~ 179 (1342)
.+++.+||+|++....|+++... ..+...|. +++.++.+ ++.+|++++++.+++. +++++++++++++ .
T Consensus 84 ~~~~~~gd~vl~~~~~~~~~~~~-~~~~~~g~--~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~ 159 (359)
T 1svv_A 84 SLALRPWEAVIATQLGHISTHET-GAIEATGH--KVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGT 159 (359)
T ss_dssp HHHCCTTEEEEEETTSHHHHSST-THHHHTTC--CEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSC
T ss_pred HHHhCCCCEEEEcccchHHHHHH-HHHhcCCC--eeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCce
Confidence 99999999999877666554332 12455666 44555554 6889999999999875 2667766666433 3
Q ss_pred ccC---HHHHHHHHHHcCCEEEEEcccchhhhhc-CCCCCCC---CCCcEEEecCCccCCCCCe-eEEEEechhHHHHhh
Q psy13354 180 YID---FERFYHIAKNINSYFMVDMAHYAGLIAA-GEYPNPV---PFADFITSTTHKSLRGPRG-GFILMKKKYKKIINS 251 (1342)
Q Consensus 180 ~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~~l---~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~ 251 (1342)
..+ +++|+++|++||++||+|++|....++. +.....+ ..+|++++|++|+. ++.| |++++++++++.+..
T Consensus 160 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g-~~~~~g~l~~~~~~~~~~~~ 238 (359)
T 1svv_A 160 QYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAG-GMFGEALIILNDALKPNARH 238 (359)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTT-CSSCEEEEECSGGGCTTHHH
T ss_pred ecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCC-CCCceEEEEEcccHHHHHHH
Confidence 335 9999999999999999999983221111 1111110 13689999999985 7878 999999887665554
Q ss_pred cc--CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHH
Q psy13354 252 AV--FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKI 329 (1342)
Q Consensus 252 ~~--~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~ 329 (1342)
.. ..+.++.. .+...++. ++ ....++++..+++.++++++.+.|+..|+++.. +.+.+++|+.++ .++
T Consensus 239 ~~~~~~~~~~~~-~~~~~~~~-~~--l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~-----~~~ 308 (359)
T 1svv_A 239 LIKQRGALMAKG-WLLGIQFE-VL--MKDNLFFELGAHSNKMAAILKAGLEACGIRLAW-PSASNQLFPILE-----NTM 308 (359)
T ss_dssp HHHHTTCCCTTT-HHHHHHHH-HH--TSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSS-CCSSSEECBEEE-----HHH
T ss_pred HHhcCCcccccc-hhhHHHHH-HH--HhhhhHHHHHHHHHHHHHHHHHHhccCCeEEcc-CCccceEEEEcC-----HHH
Confidence 21 22222211 22222222 22 112356778889999999999999556777643 456778887764 366
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
...+++++||.+.+.. +. ..+++|++++..++
T Consensus 309 ~~~l~~~~gi~v~~~~----~~---~~~~iRi~~~~~~~ 340 (359)
T 1svv_A 309 IAELNNDFDMYTVEPL----KD---GTCIMRLCTSWATE 340 (359)
T ss_dssp HHHHTTTEECEEEEEE----TT---TEEEEEEECCTTCC
T ss_pred HHHHHHhcCEEEEecc----cC---CCceEEEEccCcCC
Confidence 6666665599983211 11 14579998776544
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-20 Score=222.02 Aligned_cols=317 Identities=13% Similarity=0.089 Sum_probs=208.3
Q ss_pred CceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CC-CceEecCCHHHHH
Q psy13354 28 NNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AE-AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~-~~vi~~~sGs~A~ 102 (1342)
+.+.+..+++.++ +.+.+++.+.+.. ...+|+ .. ..++++++++++.+.+| .+ +.+++++||++|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~y~------~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~ 102 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQ-LVYGYT------YA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAI 102 (392)
Confidence 4566766664333 3488887777632 111221 11 55788877778777767 32 4555665889999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-C--CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-K--KEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~--~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
..++.+++.+||+|++..+.++++. ..+...|. +++.++.+ + ++.+|++.+++.+++.++++++++++++|
T Consensus 103 ~~~~~~~~~~gd~vl~~~p~~~~~~---~~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~npt 177 (392)
T 3b1d_A 103 SIAIQAFTKEGEAVLINSPVYPPFA---RSVRLNNR--KLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPG 177 (392)
Confidence 9999999999999997765555443 33344555 44444543 2 35689999999887445666666666655
Q ss_pred ----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC------CCCcEEEecCCccCCCCCe---eEEEEec-h
Q psy13354 179 ----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV------PFADFITSTTHKSLRGPRG---GFILMKK-K 244 (1342)
Q Consensus 179 ----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l------~~~Divv~S~sK~l~gp~G---G~iv~~~-~ 244 (1342)
...++++|+++|++||++||+||+|+.+.+.+..+.... ...+++++|+||++ |..| ||+++++ +
T Consensus 178 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~ 256 (392)
T 3b1d_A 178 GRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTF-NIAGTKNSYAIIENPT 256 (392)
Confidence 223699999999999999999999986554332211111 12357889999999 5455 9999875 5
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-C-CcEEeeCCCCCeEEEEEccC
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-R-GIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~-g~~~~~~~~~~~~v~i~~~~ 322 (1342)
+++.+......+.+++++...+.++..++.. ..+++++.++++.++++++.+.|.+ . ++.+.. +.+++++|++++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~i~~~~ 334 (392)
T 3b1d_A 257 LCAQFKHQQLVNNHHEVSSLGYIATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMK-PQGTYLIWLDFSD 334 (392)
Confidence 8888876544443333334444444444443 2346777888899999999999987 3 666543 4556677888865
Q ss_pred C-CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 323 K-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 323 ~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
. ....++...+++++||.+.++..++.. ..+++|++++.
T Consensus 335 ~~~~~~~l~~~l~~~~gi~v~~g~~f~~~----~~~~iRi~~~~ 374 (392)
T 3b1d_A 335 YGLTDDALFTLLHDQAKVILNRGSDYGSE----GELHARLNIAA 374 (392)
Confidence 3 234466777766679999987655421 14579999775
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=7e-17 Score=199.82 Aligned_cols=303 Identities=15% Similarity=0.154 Sum_probs=203.1
Q ss_pred HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccC-----C
Q psy13354 41 LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLN-----P 112 (1342)
Q Consensus 41 ~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~-----p 112 (1342)
+.+.+++.+++. .+.... ...+...++..++++++.+++++++|.+ ..+++++||++|+..++.++.. +
T Consensus 78 ~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 78 DDLIHLQTIAYE-KYCVAN--QLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp HHHHHHHHHHHH-HTSSCB--TTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHH-HHhhcC--CCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 457777777764 332111 1223445677899999999999999987 4666777999999999998864 5
Q ss_pred C---CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHH
Q psy13354 113 G---DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERF 186 (1342)
Q Consensus 113 G---D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I 186 (1342)
| |+|+++. ++|.+....+...|.. ++.++.++ ++.+|++++++++.+ ++++|++++++++ ...++++|
T Consensus 155 g~~~~~Vi~~~---~~h~~~~~~~~~~G~~--~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~l~~i 228 (497)
T 3mc6_A 155 GITEPEIIAPV---TAHAGFDKAAYYFGMK--LRHVELDPTTYQVDLGKVKKFINK-NTVLLVGSAPNFPHGIADDIEGL 228 (497)
T ss_dssp CCSSCEEEEET---TSCHHHHHHHHHSCCE--EEEECBCTTTCSBCTTTTGGGCCS-SEEEEEEETTCTTTCCCCSCTTT
T ss_pred CCCCceEEEeC---CccHHHHHHHHHcCCe--EEEEecCcccCcCCHHHHHHHHhh-CCEEEEEECCCCCCCcCCCHHHH
Confidence 6 8999766 4555556666777874 45556665 788999999998875 4567777666655 55589999
Q ss_pred HHHHHHcCCEEEEEcccchhhhh----c--CCC--C-CCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC-C
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIA----A--GEY--P-NPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF-P 255 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~----~--~~~--~-~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~-~ 255 (1342)
+++|++||++||+|++|+.+... . +.. . .....+|++++|+||++.++.| |+++++++.......... .
T Consensus 229 ~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 308 (497)
T 3mc6_A 229 GKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPA 308 (497)
T ss_dssp TTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTT
T ss_pred HHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhccccc
Confidence 99999999999999999855432 0 111 1 1122479999999999867777 999988765544321111 1
Q ss_pred c---------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEEccCCC
Q psy13354 256 G---------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVDLRNKK 324 (1342)
Q Consensus 256 ~---------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~~~~~~ 324 (1342)
+ ..++......+++.+++......+++++.++..++++++.+.|.+. |+++..+ +...++++.... .
T Consensus 309 ~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~-~~~~~v~~~~~~-~ 386 (497)
T 3mc6_A 309 WTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGN-PRYSVISFSSKT-L 386 (497)
T ss_dssp CTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSC-CCSSEEEEECTT-T
T ss_pred ccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC-CCeeEEEEeCCC-C
Confidence 1 1112222234445555554444567888899999999999999995 8888654 344555555442 1
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
...++...+ .++||.+.....| ..+|++++
T Consensus 387 ~~~~l~~~L-~~~Gi~v~~~~~~---------~~~ri~~~ 416 (497)
T 3mc6_A 387 NIHELSDRL-SKKGWHFNALQKP---------VALHMAFT 416 (497)
T ss_dssp THHHHHHHH-HTTTCBCEECCSS---------CCEEEECC
T ss_pred CHHHHHHHH-HhCCEEEecCCCC---------CeEEEEEe
Confidence 233455555 4559988754322 24788877
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-17 Score=201.74 Aligned_cols=294 Identities=17% Similarity=0.131 Sum_probs=191.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccC--------CC-----C-EEEEeeccCCccc
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLN--------PG-----D-TIMGMSLQEGGHL 127 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~--------pG-----D-~Vlv~~~~~~~~~ 127 (1342)
|...+...++|+++++++++++|.+ ..+++++|||+|+..++.++.. +| + .|+++.. .|.
T Consensus 124 ~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~---~h~ 200 (504)
T 2okj_A 124 YEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQ---SHY 200 (504)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETT---SCT
T ss_pred hhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCc---chH
Confidence 3444667789999999999999986 3456666999999999988742 56 6 6775553 445
Q ss_pred hhhHHhhhCCcee-EEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEE
Q psy13354 128 THGMMLNMSGKWF-NSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMV 199 (1342)
Q Consensus 128 s~~~~~~~~g~~~-~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIv 199 (1342)
+....+...|.+. +++.++.+++|.+|+++|++++.+. .+++|+++.++++ ...|+++|+++|++||+|+++
T Consensus 201 s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhv 280 (504)
T 2okj_A 201 SIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHV 280 (504)
T ss_dssp HHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEE
Confidence 5555555566533 4555677778999999999998763 4667777665554 456999999999999999999
Q ss_pred EcccchhhhhcCCCCCCC---CCCcEEEecCCccCCCCCe-eEEEEec-hhHHHHhhccCCccccCCc------------
Q psy13354 200 DMAHYAGLIAAGEYPNPV---PFADFITSTTHKSLRGPRG-GFILMKK-KYKKIINSAVFPGIQGGPL------------ 262 (1342)
Q Consensus 200 Dea~~~g~~~~~~~~~~l---~~~Divv~S~sK~l~gp~G-G~iv~~~-~l~~~l~~~~~~~~~~~~~------------ 262 (1342)
|++|+.+.+....+...+ ..+|++++++|||+++|.| |++++++ ++.+.......++..+...
T Consensus 281 D~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 360 (504)
T 2okj_A 281 DAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKA 360 (504)
T ss_dssp EETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGS
T ss_pred ehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCC
Confidence 999987766432221122 2479999999999977877 9999887 4655433222222211100
Q ss_pred -----HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEee--CCCCCeEEEEEccCC--C--------
Q psy13354 263 -----MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVS--GGTKSHIILVDLRNK--K-------- 324 (1342)
Q Consensus 263 -----~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~--~~~~~~~v~i~~~~~--~-------- 324 (1342)
.....++.+++..+..++++++.++..++++++.+.|.+. |+++.. .+..+.+++...+.. .
T Consensus 361 ~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~ 440 (504)
T 2okj_A 361 IQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRR 440 (504)
T ss_dssp SCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHH
T ss_pred CCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhH
Confidence 0001122222222233477888899999999999999985 888865 244445544433321 0
Q ss_pred -----CCHHHHHHHHHHCCc-eeeeccCCCCCCCcccccccccccc-cccc
Q psy13354 325 -----ITGKIAESILESANI-ICNKNSIPNDPEKPYFTSGIRLGSS-AITT 368 (1342)
Q Consensus 325 -----~~~~~~~~ll~~~GI-~v~~~~~p~~~~~~~~~~~lRi~~~-~~~t 368 (1342)
.+.++...++++ |+ ++.+.... +. .+.+|++++ ..++
T Consensus 441 ~~~~~~~~~l~~~L~~~-G~~~~~~~~~~---~~---~~~lRis~~~~~~t 484 (504)
T 2okj_A 441 EKLHKVAPKIKALMMES-GTTMVGYQPQG---DK---ANFFRMVISNPAAT 484 (504)
T ss_dssp HHHTTHHHHHHHHHHHH-TSCEEEEEEET---TE---EEEEEECCCCTTCC
T ss_pred HHHHHHHHHHHHHHHhC-CcEEEEeeEEC---Cc---eEEEEEEeCCCCCC
Confidence 023456666666 64 44432211 11 247999997 4444
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-17 Score=196.11 Aligned_cols=287 Identities=12% Similarity=0.154 Sum_probs=186.7
Q ss_pred eeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHH
Q psy13354 31 ELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 31 ~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~ 107 (1342)
.+..+++.+++ .+.+++.+.+... .|+. .....++++ .+++++|.+++++++ ||++|+..++.
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~~---------~y~~~~~~~~~l~~----~la~~~~~~~v~~~~-ggt~al~~~l~ 85 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDSQ---------WLSNGGPLVREFEE----RVAGLAGVRHAVATC-NATAGLQLLAH 85 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHHT---------CCSSSCHHHHHHHH----HHHHHHTSSEEEEES-CHHHHHHHHHH
T ss_pred cccccCCCCCChHHHHHHHHHHHhcC---------CcccCCHHHHHHHH----HHHHHhCCCeEEEeC-CHHHHHHHHHH
Confidence 35556655544 5888887777421 1333 344555555 888888887655555 99999999999
Q ss_pred HccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHH
Q psy13354 108 SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186 (1342)
Q Consensus 108 al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I 186 (1342)
++. +||+|+++...|+++ ...+...|. +++.++.++ ++.+|++++++.+++ ++++|++++ ..+...++++|
T Consensus 86 ~l~-~gd~Vlv~~~~~~~~---~~~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~tG~~~~l~~i 157 (424)
T 2po3_A 86 AAG-LTGEVIMPSMTFAAT---PHALRWIGL--TPVFADIDPDTGNLDPDQVAAAVTP-RTSAVVGVH-LWGRPCAADQL 157 (424)
T ss_dssp HHT-CCSEEEEESSSCTHH---HHHHHHTTC--EEEEECBCTTTSSBCHHHHGGGCCT-TEEEEEEEC-GGGCCCCHHHH
T ss_pred HcC-CCCEEEECCCccHHH---HHHHHHcCC--EEEEEecCCCcCCcCHHHHHHhhCc-CCcEEEEEC-CCCCcCCHHHH
Confidence 985 789999877665544 445566677 455556653 678999999988865 456666543 23355699999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCeeEEEEe-chhHHHHhhccCCcc------
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRGGFILMK-KKYKKIINSAVFPGI------ 257 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~GG~iv~~-~~l~~~l~~~~~~~~------ 257 (1342)
+++|+++|++||+|++|+.|....+.... ...|++++||| |+++++.||+++++ +++++.+........
T Consensus 158 ~~la~~~~~~li~Dea~~~g~~~~~~~~~--~~~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~ 235 (424)
T 2po3_A 158 RKVADEHGLRLYFDAAHALGCAVDGRPAG--SLGDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGS 235 (424)
T ss_dssp HHHHHHTTCEEEEECTTCTTCEETTEETT--SSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCC
T ss_pred HHHHHHcCCEEEEECccccCCeECCeecc--cccCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCccccccc
Confidence 99999999999999999876543332211 12489999998 88866666999998 677777654322111
Q ss_pred ----ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCC----CeEEEEEccCC--CCC
Q psy13354 258 ----QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTK----SHIILVDLRNK--KIT 326 (1342)
Q Consensus 258 ----~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~----~~~v~i~~~~~--~~~ 326 (1342)
.+....+..++++.. . . ++++.+.++..++++++.+.|.+. |+.+...+.+ .+++++.+++. +.+
T Consensus 236 ~~~g~~~~~~~~~aa~~l~--~-~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 311 (424)
T 2po3_A 236 PAGGTNAKMSEAAAAMGLT--S-L-DAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIH 311 (424)
T ss_dssp TTCCCBCCCCHHHHHHHHH--H-H-HHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSC
T ss_pred cccCcCCCcCHHHHHHHHH--H-H-HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchhh
Confidence 011112333333322 1 1 245667788888999999999886 7777542221 14455666531 223
Q ss_pred HHHHHHHHHHCCceeeecc
Q psy13354 327 GKIAESILESANIICNKNS 345 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~ 345 (1342)
.+.+...+.++||.+.+.+
T Consensus 312 ~~~l~~~L~~~gI~v~~~~ 330 (424)
T 2po3_A 312 RDLVMEVLKAEGVHTRAYF 330 (424)
T ss_dssp HHHHHHHHHHTTEECBCTT
T ss_pred HHHHHHHHHHCCCceeccc
Confidence 4444556666799998743
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-20 Score=227.00 Aligned_cols=264 Identities=18% Similarity=0.188 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchH
Q psy13354 808 LYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTT 886 (1342)
Q Consensus 808 ~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~ 886 (1342)
.+.+.+.+.+++ .+++|+.+ +|++|..++++|.||.+.+|..+.|+.||+||| |.+++..|++|+
T Consensus 135 ~l~~~L~~~~~~-~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtG---------g~s~~~~g~tG~---- 200 (447)
T 2i0z_A 135 SVVDALLTRLKD-LGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVG---------GKSVPQTGSTGD---- 200 (447)
T ss_dssp HHHHHHHHHHHH-TTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCC---------CSSSGGGSCSSH----
T ss_pred HHHHHHHHHHHH-CCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCC---------CCcCCCCCCCcH----
Confidence 344445555554 68999765 799999999999999999998899999999999 777777776665
Q ss_pred HHHHHHH-HcCCCccccccCCCcc-----------cccCcccc----------ccceeecCCCCCCCcccccCCCCCCCC
Q psy13354 887 SLAKRLK-ELQLSHGRLKTGTPPR-----------IDKRTIDF----------SKMEEQIGDFDPVPVFSVLGNINLHPK 944 (1342)
Q Consensus 887 ~l~~~l~-~~g~~~~~~~~~~~~r-----------~~~~si~~----------~~~~~~~~d~~~~~~f~~~~~~~~~~~ 944 (1342)
+..++ ++|+.+.++.+...|. +.+.++.. .++..+.|| +.|+||+.+||.++
T Consensus 201 --g~~la~~~G~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~r~~~~~ge-~~~t~~~~~g~~~l--- 274 (447)
T 2i0z_A 201 --GYAWAEKAGHTITELFPTEVPILSNEPFIRDRSLQGLALRDINLSVLNPKGKAIISHKMD-MLFTHFGLSGPAAL--- 274 (447)
T ss_dssp --HHHHHHHTTCCEEEEEECSCCEECCCHHHHTTTTTTCEEEEEEEEECC----CEEEEEEE-EEECSSEEESHHHH---
T ss_pred --HHHHHHHCCCCcccCcceeeeeecCCcccccccccCcccCCeEEEEEecCCceEecccCC-eEEECCcccHHHHH---
Confidence 45554 4788776544332211 22222100 112233467 88999999999877
Q ss_pred ccccchhhcchhH-HHHHHhhcccCCCCc-cccccc-----cCCCCCCcccccccCCCCCccceeEeecccccceeecCc
Q psy13354 945 QLSCFITHTNEKT-HNIIRSEFKNSPIFS-GKIESI-----GPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNG 1017 (1342)
Q Consensus 945 ~~~c~~~~~~~~~-~~~i~~~~~~~p~~~-~~~~~~-----g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~~~~g 1017 (1342)
++|.++....... .+.....+|+.|.++ .++... +.+--.++++.+ +...+..+.++.++...+.+++
T Consensus 275 ~~s~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l-----~~~~~~~~~~~l~~~~~i~~~~ 349 (447)
T 2i0z_A 275 RCSQFVVKALKKFKTNTIQMSIDALPEENSEQLFQRMLKQMKEDPKKGIKNVL-----KGYVPERYFLFLLEKNEIDGSE 349 (447)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEESCTTSCHHHHHHHHHHHHTTSTTSBHHHHT-----TTSSCHHHHHHHHHHTTCCTTS
T ss_pred HHHHHHHHHHhcccCCceEEEEECCCCCCHHHHHHHHHHHHHhChhhhHHHhc-----cccChHHHHHHHHHHcCCCcCC
Confidence 6777665321000 000124567778776 222111 111111122111 1112222444455555677777
Q ss_pred cccCCCHHHHHHHHHhcccc----------cceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHH---
Q psy13354 1018 ISTSLPFEAQIELVQSIDGM----------KNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYE--- 1084 (1342)
Q Consensus 1018 ~~~~l~~~~q~~~~~~i~gl----------e~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~--- 1084 (1342)
...+++++...++.+.++.+ +.|.+|.||+.+.+ |||+ |||+|.|||||||||+.|++||+
T Consensus 350 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~T~GGv~~~~--i~~~----t~~~~~i~GLy~aGEv~~v~g~~GG~ 423 (447)
T 2i0z_A 350 QAGQVSHEKIRALVKDFKEFTVNVNGTQSIEKAFVTGGGVSVKE--INPK----EMSSKFTNGLYFCGEVLDIHGYTGGY 423 (447)
T ss_dssp BGGGSCHHHHHHHHHHHHHEEEEECEECCGGGCSSEEEEECGGG--EETT----TTEESSSBTEEECGGGBSCBCCTTTH
T ss_pred chhhCCHHHHHHHHHHhhCCEEEecCCCCccEEEEeCCceeeec--cccc----ccccCcCCCEEEEEeeccCccCCCcH
Confidence 88899999988888876654 57999999999999 9999 99999999999999999999987
Q ss_pred ---HHHHHHHHHHHHHHHHhC
Q psy13354 1085 ---EAASQGLLAGLNAALFSQ 1102 (1342)
Q Consensus 1085 ---eA~~~G~~Ag~na~~~~~ 1102 (1342)
.|+++|++||.+||..++
T Consensus 424 ~l~~a~~~G~~Ag~~aa~~~~ 444 (447)
T 2i0z_A 424 NITSALVTGRIAGTTAGENAK 444 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 599999999999998764
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=200.57 Aligned_cols=306 Identities=12% Similarity=0.066 Sum_probs=195.2
Q ss_pred cCceeeeecCC-------CCcHHHHHHHhH-HHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC---CCceEe-
Q psy13354 27 NNNIELIASEN-------YTSLAVMEAQGT-LLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA---EAANVQ- 94 (1342)
Q Consensus 27 ~~~i~l~a~~n-------~l~~~v~eal~~-~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~---~~~vi~- 94 (1342)
.+.+.+..+.. +.++.+.+++.+ .+... ....|+...+..++++++++++....|. ++.+++
T Consensus 29 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~------~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~ 102 (412)
T 1yaa_A 29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSS------YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISV 102 (412)
T ss_dssp SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTT------CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcc------cccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEE
Confidence 34577766652 455678888877 65311 1112333445567888666666443331 234555
Q ss_pred -cCCHHHHHHHHH--HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC-C-CCCCCCHHHHHHHHHhcC--C
Q psy13354 95 -PHSGSQANQAVF--FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL-N-KKEKIDYKKVEYLAKKNK--P 167 (1342)
Q Consensus 95 -~~sGs~A~~~al--~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~-~-~~~~id~e~Le~~i~~~~--~ 167 (1342)
++||++|+..++ ..++.|||+|++..+.+++ ....+...|..+..+ +. + +++.+|++++++.+++.+ .
T Consensus 103 ~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~---~~~~~~~~g~~~~~v--~~~~~~~~~~d~~~l~~~l~~~~~~~ 177 (412)
T 1yaa_A 103 QSLSGTGALHISAKFFSKFFPDKLVYLSKPTWAN---HMAIFENQGLKTATY--PYWANETKSLDLNGFLNAIQKAPEGS 177 (412)
T ss_dssp EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTT---HHHHHHTTTCCEEEE--ECEETTTTEECHHHHHHHHHHSCTTC
T ss_pred eccchHhHHHHHHHHHHHhCCCCEEEEeCCCCcc---HHHHHHHcCceEEEE--eeecCCCCccCHHHHHHHHHhCCCCC
Confidence 558899999883 4456799999988765554 344455667654444 44 2 367799999999998653 3
Q ss_pred eEEEEcCCCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhc--CCCCC--C---CCC---CcEEEecCCccCC
Q psy13354 168 KLIIAGASAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAA--GEYPN--P---VPF---ADFITSTTHKSLR 232 (1342)
Q Consensus 168 ~liv~~~s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~--~~~~~--~---l~~---~Divv~S~sK~l~ 232 (1342)
.++++++++|| +. .++++|+++|++||++||+|++|....++. ....+ . ... .+++++|+||++
T Consensus 178 ~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~- 256 (412)
T 1yaa_A 178 IFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA- 256 (412)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS-
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCC-
Confidence 45554676666 22 257889999999999999999986433221 00000 0 011 357899999999
Q ss_pred CCCe---eEEE--E-----ech----hHHHHhhccCCccccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHH
Q psy13354 233 GPRG---GFIL--M-----KKK----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAK 293 (1342)
Q Consensus 233 gp~G---G~iv--~-----~~~----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~ 293 (1342)
|+.| ||++ + +++ +++.+...... .+++++.+.+.++..++... ...+.++.++++.++++
T Consensus 257 ~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (412)
T 1yaa_A 257 GMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRS-EVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRH 335 (412)
T ss_dssp CCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHT-TTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhh-ccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 9998 7 555 77766652222 23333455555555444332 12367788899999999
Q ss_pred HHHHHHHhCC----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 294 ILSKILDQRG----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 294 ~l~~~L~~~g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++.+.|.+.+ +++.. +..++++|+.+ +.+.+..+++++||.+.+ ++|++++.
T Consensus 336 ~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~--------------~~Ris~~~ 391 (412)
T 1yaa_A 336 ALRDHLVKLGTPGNWDHIV-NQCGMFSFTGL-----TPQMVKRLEETHAVYLVA--------------SGRASIAG 391 (412)
T ss_dssp HHHHHHHHHTCSSCCTHHH-HCCSSEEECCC-----CHHHHHHHHHHHCEECCT--------------TSEEEGGG
T ss_pred HHHHHHHhhCCCCCeeeec-cCceEEEeeCC-----CHHHHHHHHHhCCEEecc--------------CcEEEEcc
Confidence 9999998865 65533 34566777643 235567788777999874 37998874
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.2e-18 Score=201.14 Aligned_cols=300 Identities=10% Similarity=0.031 Sum_probs=188.9
Q ss_pred CceeeeecC----CC---CcHHHHHHHhH-HHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC---CCC--ceEe
Q psy13354 28 NNIELIASE----NY---TSLAVMEAQGT-LLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN---AEA--ANVQ 94 (1342)
Q Consensus 28 ~~i~l~a~~----n~---l~~~v~eal~~-~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g---~~~--~vi~ 94 (1342)
+.+++..+. +. .++.+++++.+ .+..... ..|....+..++++++++++....+ .++ .+++
T Consensus 27 ~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~------~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~ 100 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGA------SLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQ 100 (397)
T ss_dssp CCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCC------CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CeEEEeeeEEECCCCCccCcHHHHHHHHhhccCcccc------ccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEE
Confidence 457777772 22 22569999887 7642111 1233334456777766666654433 234 5666
Q ss_pred cCCHHHHHHHHH--HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEE
Q psy13354 95 PHSGSQANQAVF--FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLI 170 (1342)
Q Consensus 95 ~~sGs~A~~~al--~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~li 170 (1342)
++||++|+..++ .+++.+||+|++..+. +......+...|..+..+++..++++.+|++++++.+++. +.+++
T Consensus 101 t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v 177 (397)
T 3fsl_A 101 TLGGSGALKVGADFLKRYFPESGVWVSDPT---WENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVL 177 (397)
T ss_dssp ESHHHHHHHHHHHHHHHHCTTCCEEEESSC---CHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEE
T ss_pred cCCcHHHHHHHHHHHHhcCCCCeEEEeCCC---chhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEE
Confidence 668899999994 5568999999977644 4444555666777544443322456889999999999853 34667
Q ss_pred EEcCCCCC-c-c---cCHHHHHHHHHHcCCEEEEEcccchhhhhcC-CCCCC-----CCCCcEEEecCCccCCCCCe---
Q psy13354 171 IAGASAYS-Q-Y---IDFERFYHIAKNINSYFMVDMAHYAGLIAAG-EYPNP-----VPFADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 171 v~~~s~~~-~-~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~~~~~-----l~~~Divv~S~sK~l~gp~G--- 236 (1342)
++++++|| + . .++++|+++|++||++||+||+|+.+.+... ...+. .....++++|+||++ |+.|
T Consensus 178 ~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~ri 256 (397)
T 3fsl_A 178 LHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF-SLYGERV 256 (397)
T ss_dssp ECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT-TCGGGCC
T ss_pred EeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccc-cCcCCCe
Confidence 76666666 2 2 3677999999999999999999876544210 00000 112358889999999 7667
Q ss_pred eEEEEe---chhHHHHhhccC---CccccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhC---
Q psy13354 237 GFILMK---KKYKKIINSAVF---PGIQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAKILSKILDQR--- 302 (1342)
Q Consensus 237 G~iv~~---~~l~~~l~~~~~---~~~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~~l~~~L~~~--- 302 (1342)
||++++ +++++.+..... ...+++++...+.+++.++... ..++.++.++++.++++++.+.|.+.
T Consensus 257 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 336 (397)
T 3fsl_A 257 GGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPE 336 (397)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 998753 344443322110 0122222333444433333211 12356778899999999999999886
Q ss_pred -CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 303 -GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 303 -g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
|+.+.. +..++++|+.++ .+.+..+++++||.+.+
T Consensus 337 ~~~~~~~-~~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~ 372 (397)
T 3fsl_A 337 RNFDYLL-NQRGMFSYTGLS-----AAQVDRLREEFGVYLIA 372 (397)
T ss_dssp SCCTHHH-HCCSSEEECCCC-----HHHHHHHHHTTCEECCT
T ss_pred CCceeec-CCceEEEecCCC-----HHHHHHHHHhCCEEECC
Confidence 565433 345677886653 46678888888999974
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=198.92 Aligned_cols=309 Identities=11% Similarity=0.017 Sum_probs=194.6
Q ss_pred cCceeeeecC--C-----CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC---CCCceEe--
Q psy13354 27 NNNIELIASE--N-----YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN---AEAANVQ-- 94 (1342)
Q Consensus 27 ~~~i~l~a~~--n-----~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g---~~~~vi~-- 94 (1342)
.+.+++..+. + +.++.+.+++.+.+.. . .....|+...+..++++++.+++....| ..+.+++
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~----~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~ 104 (412)
T 1ajs_A 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN-S----SLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQ 104 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC-T----TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCceeeccceecCCCCCccccHHHHHHHHHhhhC-h----hhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEE
Confidence 3557777765 2 3446788887776521 1 0111233344456777755555433222 1234554
Q ss_pred cCCHHHHHHHHHH--HccCCC-----CEEEEeeccCCccchhhHHhhhCCce-eEEEEecCCCCCCCCHHHHHHHHHhc-
Q psy13354 95 PHSGSQANQAVFF--SVLNPG-----DTIMGMSLQEGGHLTHGMMLNMSGKW-FNSICYGLNKKEKIDYKKVEYLAKKN- 165 (1342)
Q Consensus 95 ~~sGs~A~~~al~--al~~pG-----D~Vlv~~~~~~~~~s~~~~~~~~g~~-~~~v~~~~~~~~~id~e~Le~~i~~~- 165 (1342)
++||++|+..++. +++.+| |+|++..+.|++ ....+...|.. +..+++..++++.+|++++++.+.+.
T Consensus 105 t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 181 (412)
T 1ajs_A 105 SLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWEN---HNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP 181 (412)
T ss_dssp EEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTH---HHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSC
T ss_pred CCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHH---HHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCC
Confidence 5599999999954 456899 999988765554 34445666765 55554322356778999999998864
Q ss_pred -CCeEEEEcCCCCC-c-c---cCHHHHHHHHHHcCCEEEEEcccchhhhhc--CCCCCC--C---CCCcEEEecCCccCC
Q psy13354 166 -KPKLIIAGASAYS-Q-Y---IDFERFYHIAKNINSYFMVDMAHYAGLIAA--GEYPNP--V---PFADFITSTTHKSLR 232 (1342)
Q Consensus 166 -~~~liv~~~s~~~-~-~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~--~~~~~~--l---~~~Divv~S~sK~l~ 232 (1342)
+..++++++++|| + . .++++|+++|++||++||+||+|......+ ..+... + ...+++++|+||++
T Consensus 182 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~- 260 (412)
T 1ajs_A 182 EFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNF- 260 (412)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-
T ss_pred CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEeccccc-
Confidence 3456666676666 2 2 357899999999999999999976433321 011000 1 11248899999999
Q ss_pred CCCe---eEEEE---ech----hHHHHhhccCCccccCCcHHHHHHHHHHHHHhc-----cchHHHHHHHHHHHHHHHHH
Q psy13354 233 GPRG---GFILM---KKK----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-----KPDFKIYQKQVVKNAKILSK 297 (1342)
Q Consensus 233 gp~G---G~iv~---~~~----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-----~~~~~~~~~~l~~~a~~l~~ 297 (1342)
|+.| ||+++ +++ +++.+... ....+++++.+.+.++..++.... ..+.++.++++.++++++.+
T Consensus 261 ~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (412)
T 1ajs_A 261 GLYNERVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRA 339 (412)
T ss_dssp CCGGGCEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEEecCCHHHHHHHHHHHHHH-HhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 99999 776 44444431 112223333445555544443321 23667788999999999999
Q ss_pred HHHhCC----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 298 ILDQRG----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 298 ~L~~~g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.|.+.+ +.+.. +..+++.|+.++ .+.+..+++++||.+.+ ++|++++.
T Consensus 340 ~L~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~--------------~~Ris~~~ 391 (412)
T 1ajs_A 340 RLEALKTPGTWNHIT-DQIGMFSFTGLN-----PKQVEYLINQKHIYLLP--------------SGRINMCG 391 (412)
T ss_dssp HHHHTTCSSCCHHHH-HCCSSEEECCCC-----HHHHHHHHHTTCEECCT--------------TSEEEGGG
T ss_pred HHHhhCCCCCeeEEc-CCCceEEEeCCC-----HHHHHHHHHhCCEEecC--------------CcEEEeee
Confidence 999876 55433 345677776543 56788888888999974 26888874
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-17 Score=190.52 Aligned_cols=207 Identities=24% Similarity=0.311 Sum_probs=167.8
Q ss_pred hhccCCCCccccccchhhHHHHHHHHHc----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 382 ARKYRPSNFNTLIGQNHISKSLINALDK----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 382 ~~k~~p~~f~~lvGq~~~~~~L~~~l~~----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|+|.+|++++|++.+++.+...+.. +..++.+||+||+|+|||++|+.+++.+++
T Consensus 3 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~------------------ 64 (324)
T 1hqc_A 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV------------------ 64 (324)
T ss_dssp --CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC------------------
T ss_pred ccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC------------------
Confidence 4789999999999999999888887753 345567899999999999999999998863
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC----------
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP---------- 527 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~---------- 527 (1342)
.+..++++......++...+.. ..++..+++|||++.++...++.|++.+++..
T Consensus 65 -----------~~~~~~~~~~~~~~~l~~~l~~-----~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~ 128 (324)
T 1hqc_A 65 -----------NLRVTSGPAIEKPGDLAAILAN-----SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPA 128 (324)
T ss_dssp -----------CEEEECTTTCCSHHHHHHHHTT-----TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSS
T ss_pred -----------CEEEEeccccCChHHHHHHHHH-----hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhcccccc
Confidence 2344444433333333333221 12456799999999999988999999887532
Q ss_pred --------CcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHH
Q psy13354 528 --------KYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDAL 598 (1342)
Q Consensus 528 --------~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~ 598 (1342)
+++++|++++....+.+++.+|+ .++.+.+++.+++..++...+...+..+++++++.+++.++|++|.+.
T Consensus 129 ~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~ 208 (324)
T 1hqc_A 129 ARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAK 208 (324)
T ss_dssp CCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHH
T ss_pred ccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHH
Confidence 35789999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC----CCCCHHHHHHHhc
Q psy13354 599 SLTDQAINYSS----EKITLNSMQEMLS 622 (1342)
Q Consensus 599 ~~L~kl~~~~~----~~It~e~V~~~v~ 622 (1342)
+.++.+..++. ..|+.+++..++.
T Consensus 209 ~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 236 (324)
T 1hqc_A 209 RLFRRVRDFAQVAGEEVITRERALEALA 236 (324)
T ss_dssp HHHHHHTTTSTTTSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99999877662 4599998887663
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-17 Score=197.34 Aligned_cols=306 Identities=14% Similarity=0.186 Sum_probs=196.2
Q ss_pred eeeeecC-CCCcHHHHHHHhHHHHhccccCCCCCC-ccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 30 IELIASE-NYTSLAVMEAQGTLLTNKYAEGYPGKR-YYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 30 i~l~a~~-n~l~~~v~eal~~~l~~~~~~g~~~~~-~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
+.+..+. .+.++.+.+++.+.+...+ +++... ++.. ...+...++++++++++|.+ +.+++++||++++..++
T Consensus 30 ~yld~~~~~~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~--~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al 105 (416)
T 1qz9_A 30 IYLDGNSLGARPVAALARAQAVIAEEW--GNGLIRSWNSA--GWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVL 105 (416)
T ss_dssp EECCTTTSCCCBTTHHHHHHHHHHTCC--CCCGGGHHHHT--SGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHH
T ss_pred EeecCCCcCCCcHHHHHHHHHHHHHHH--hccCccccchh--hHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHH
Confidence 4444333 4556669999888875332 222111 1110 01133444666999999986 55666669999999888
Q ss_pred HHcc------CCCCEEEE-eeccCCccchhhHH-hhhC--CceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCC
Q psy13354 107 FSVL------NPGDTIMG-MSLQEGGHLTHGMM-LNMS--GKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASA 176 (1342)
Q Consensus 107 ~al~------~pGD~Vlv-~~~~~~~~~s~~~~-~~~~--g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~ 176 (1342)
.+++ .+||+|++ .+..|+++...... .... |. +++.++. ++++++.+++ +++++++++++
T Consensus 106 ~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~--~~~~v~~-------~~~l~~~i~~-~~~~v~~~~~~ 175 (416)
T 1qz9_A 106 SAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY--TLRLVDS-------PEELPQAIDQ-DTAVVMLTHVN 175 (416)
T ss_dssp HHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC--EEEEESS-------GGGHHHHCST-TEEEEEEESBC
T ss_pred HhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCc--eEEEeCc-------HHHHHHHhCC-CceEEEEeccc
Confidence 8876 89997554 44455443322221 2222 55 4444443 6678877765 45666666665
Q ss_pred CC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCC-CCCe-eEEEEechhHHHHh
Q psy13354 177 YS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLR-GPRG-GFILMKKKYKKIIN 250 (1342)
Q Consensus 177 ~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~-gp~G-G~iv~~~~l~~~l~ 250 (1342)
++ ...++++|.++|++||++||+|++|+.|.... .+. .+|++++|+||+++ |+.+ |++++++++++.+.
T Consensus 176 nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~-----~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~ 250 (416)
T 1qz9_A 176 YKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPV-----DLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVP 250 (416)
T ss_dssp TTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCC-----CHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSC
T ss_pred cCcccccCHHHHHHHHHHcCCEEEEEccccccCcCC-----ChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccC
Confidence 55 45589999999999999999999998654311 111 26899999999984 5566 99999998776655
Q ss_pred hccCC----------------------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----Cc
Q psy13354 251 SAVFP----------------------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GI 304 (1342)
Q Consensus 251 ~~~~~----------------------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~ 304 (1342)
..... +..++++.+.++++..++.....+++++..+++.++++++.+.|.+. |+
T Consensus 251 ~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~ 330 (416)
T 1qz9_A 251 QPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL 330 (416)
T ss_dssp CSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCe
Confidence 42111 12234555555555556555544578888999999999999999886 88
Q ss_pred EEeeCCC---CCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc-ccc
Q psy13354 305 RIVSGGT---KSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA-ITT 368 (1342)
Q Consensus 305 ~~~~~~~---~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~-~~t 368 (1342)
++..+.. ..+++++.+++ ..++...+. ++||.+... ..+.+|++++. .++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~-~~gi~~~~~----------~~~~lRis~~~~~~t 384 (416)
T 1qz9_A 331 TLVTPREHAKRGSHVSFEHPE---GYAVIQALI-DRGVIGDYR----------EPRIMRFGFTPLYTT 384 (416)
T ss_dssp EECSCSSGGGBCSEEEEECTT---HHHHHHHHH-TTTEECEEE----------TTTEEEEECCTTTCC
T ss_pred EEeCCCCHHHcCCEEEEecCC---HHHHHHHHH-hCCcEeccC----------CCCeEEEeCcccCCC
Confidence 8755321 25678888763 345555555 569987531 13569999874 444
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-17 Score=198.98 Aligned_cols=276 Identities=14% Similarity=0.088 Sum_probs=177.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCC------CceEe--cCCHHHHHHH--HHHHccCCCCEEEEeeccCCccchhhHHhh
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAE------AANVQ--PHSGSQANQA--VFFSVLNPGDTIMGMSLQEGGHLTHGMMLN 134 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~------~~vi~--~~sGs~A~~~--al~al~~pGD~Vlv~~~~~~~~~s~~~~~~ 134 (1342)
|....+..++++++++++ +|.+ +.+++ ++||++|+.. .+.+++.|||+|+++.+.++.+ ...+.
T Consensus 90 Y~~~~G~~~lr~~ia~~l---~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~---~~~~~ 163 (448)
T 3meb_A 90 YPPVAGFPLFLEAAQFLM---FGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNH---YGIYD 163 (448)
T ss_dssp CCCTTCCHHHHHHHHHHH---HCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHH---HHHHH
T ss_pred CCCCcchHHHHHHHHHHh---cCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhH---HHHHH
Confidence 344445567777444444 2654 45555 6699999987 5567788999999887665544 44445
Q ss_pred ----hCCceeEEEEecC-CC--CCCCCHHHHHHHHHh--cCCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEE
Q psy13354 135 ----MSGKWFNSICYGL-NK--KEKIDYKKVEYLAKK--NKPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVD 200 (1342)
Q Consensus 135 ----~~g~~~~~v~~~~-~~--~~~id~e~Le~~i~~--~~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvD 200 (1342)
..|..+. .+++ ++ ++.+|++.+++.+++ .+..+++++.++|| + ..++++|+++|++||+++|+|
T Consensus 164 ~~~~~~G~~v~--~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~D 241 (448)
T 3meb_A 164 KVFNKLKVPYK--EYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFD 241 (448)
T ss_dssp HHHCTTTSCCE--EECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred hhHHhCCCeEE--EEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 6676444 4454 43 488999999999986 34566676666666 2 225778999999999999999
Q ss_pred cccchhhhhcC--CCCCC-----CCCCcEEEecCCccCCCCCe---eEE--EE--------e-c----hhHHHHhhccCC
Q psy13354 201 MAHYAGLIAAG--EYPNP-----VPFADFITSTTHKSLRGPRG---GFI--LM--------K-K----KYKKIINSAVFP 255 (1342)
Q Consensus 201 ea~~~g~~~~~--~~~~~-----l~~~Divv~S~sK~l~gp~G---G~i--v~--------~-~----~l~~~l~~~~~~ 255 (1342)
++|....+... ..... .....++++|+||.| |+.| ||+ ++ + + .+++.+.....
T Consensus 242 eay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~- 319 (448)
T 3meb_A 242 SAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNF-GLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIR- 319 (448)
T ss_dssp ESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccccCCCcccCchhHHHHhhcCCcEEEEecccccC-CCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHh-
Confidence 99875433210 00000 011247799999999 7777 997 66 4 4 55555554222
Q ss_pred ccccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhCCcEE------e--eCCCCCeEEEEEccC
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAKILSKILDQRGIRI------V--SGGTKSHIILVDLRN 322 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~------~--~~~~~~~~v~i~~~~ 322 (1342)
..+.+++...+.+++.++... ..+.++..++++.++++++.+.|.+.|++. . ..+..+++.|+.+
T Consensus 320 ~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-- 397 (448)
T 3meb_A 320 KTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGL-- 397 (448)
T ss_dssp TTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCC--
T ss_pred cccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCC--
Confidence 223334455555544443221 112467788899999999999999874332 1 1245567777655
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+++..+++++||.+.++. .|++++..++
T Consensus 398 ---~~~~~~~ll~~~gV~v~~G~-------------gRis~a~~~~ 427 (448)
T 3meb_A 398 ---TPEHVDYLKEKWSIYLVKAG-------------GRMSMCGLTE 427 (448)
T ss_dssp ---CHHHHHHHHHHHCEEECSGG-------------GEEEGGGCCT
T ss_pred ---CHHHHHHHHHhCCEEEeCCC-------------cEEEEecCCH
Confidence 35788888888899997531 3888865444
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=201.22 Aligned_cols=339 Identities=17% Similarity=0.067 Sum_probs=202.0
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCC---CcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHH
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENY---TSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINR 81 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~---l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~ 81 (1342)
.++.....+......... ....++|..+++. +++ .+.+++.+.+.... + .....|+...+..++++ .
T Consensus 13 ~l~~~~~~~~~~~~~l~~-~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~Y~~~~G~~~lr~----~ 84 (422)
T 3d6k_A 13 RLAQVREEVTAKYAELKA-KNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKD--G-VDCRNYGGLLGIADIRE----L 84 (422)
T ss_dssp -----CHHHHHHHHHHHH-TTCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTT--C-CBTTSSCCSSCCHHHHH----H
T ss_pred HHHhhHHHHHHHHHHHhc-cCCeEeCCCCCCChhhCCCcHHHHHHHHHHHhhcc--c-hhhhCCCCCCCCHHHHH----H
Confidence 444445556666544433 2346888887763 222 35554433210000 0 01122444444556776 6
Q ss_pred HHHHhCCC-CceEecCCHHHHH--HHHHHHccCC------------CCEEEEeeccCCccchhhHHhhhCCceeEEEEec
Q psy13354 82 LKKIFNAE-AANVQPHSGSQAN--QAVFFSVLNP------------GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 82 la~~~g~~-~~vi~~~sGs~A~--~~al~al~~p------------GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~ 146 (1342)
++++++.+ +.+++++|+++++ ..++.++..+ +|+|++..+.|++ ....+...|..+ +.++
T Consensus 85 ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~---~~~~~~~~g~~~--~~v~ 159 (422)
T 3d6k_A 85 WAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDR---HFTITEHFGFEM--INVP 159 (422)
T ss_dssp HHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHH---HHHHHHHHTCEE--EEEE
T ss_pred HHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHH---HHHHHHHcCCEE--EecC
Confidence 77777876 5666665777787 5666777655 3479977755544 444555667744 4445
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEE-EcCCCCC--cccC---HHHHHHHHH-HcCCEEEEEcccchhhhh-cCC-CCCC-
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLII-AGASAYS--QYID---FERFYHIAK-NINSYFMVDMAHYAGLIA-AGE-YPNP- 216 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv-~~~s~~~--~~~~---l~~I~~la~-~~gi~LIvDea~~~g~~~-~~~-~~~~- 216 (1342)
.++++ +|++++++.+++.++++++ ++.++|| ...+ +++|+++|+ +||++||+||+|..+.+. .+. +.+.
T Consensus 160 ~~~~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~ 238 (422)
T 3d6k_A 160 MTDEG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVI 238 (422)
T ss_dssp EETTE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHH
T ss_pred CCCCC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChh
Confidence 54445 8999999999765567766 5556665 2234 558888888 999999999999752232 221 1121
Q ss_pred -------CCCCcEEEecCCccCCCC--CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHH--hccchHHHHH
Q psy13354 217 -------VPFADFITSTTHKSLRGP--RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE--VLKPDFKIYQ 285 (1342)
Q Consensus 217 -------l~~~Divv~S~sK~l~gp--~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~--~l~~~~~~~~ 285 (1342)
....+++++||||+. ++ ..||+++++++++.+......+.+ +++.+.+.++..++.. ....++++.+
T Consensus 239 ~~~~~~~~~~~~i~~~S~SK~~-~~GlriG~~~~~~~l~~~l~~~~~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 316 (422)
T 3d6k_A 239 EFAQAAGNPNRFWFMSSTSKIT-HAGSGVSFFASSKENIEWYASHANVRGI-GPNKLNQLAHAQFFGDVAGLKAHMLKHA 316 (422)
T ss_dssp HHHHHTTCTTCEEEEEESTTTS-CTTSSCEEEECCHHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred hHhhccCCCCcEEEEcChhhhc-CcccceEEEEeCHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 112468899999984 43 239999999988887764333333 3345555555544432 1123566677
Q ss_pred HHHHHHHHHHHHHHHh----CC-cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeec-cCCCCCCCccccccc
Q psy13354 286 KQVVKNAKILSKILDQ----RG-IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKN-SIPNDPEKPYFTSGI 359 (1342)
Q Consensus 286 ~~l~~~a~~l~~~L~~----~g-~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~-~~p~~~~~~~~~~~l 359 (1342)
+.+.++++++.+.|.+ .| +.+. .+.+++++|+.++.. +.+.+..++.++||.+.+. ..+..... -..+++
T Consensus 317 ~~~~~~~~~l~~~L~~~l~~~~~~~~~-~p~~g~~~~~~~~~~--~~~~~~~~l~~~gV~v~~~g~~f~~~~~-~~~~~i 392 (422)
T 3d6k_A 317 ASLAPKFERVLEILDSRLSEYGVAKWT-SPTGGYFISVDVVPG--TASRVVELAKEAGIALTGAGSSFPLHND-PNNENI 392 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCEEEC-CCSBSSCEEEEESTT--CHHHHHHHHHHTTEECCCTTTTSGGGCC-TTSCEE
T ss_pred HHHHHHHHHHHHHHHHhcCcCCceEEe-CCCcceEEEEECCCC--CHHHHHHHHHHCCeEEEcCccccCCCCC-CCCCeE
Confidence 7778888888887765 34 4543 356788999998754 3455566777789999983 32221000 013579
Q ss_pred cccccc
Q psy13354 360 RLGSSA 365 (1342)
Q Consensus 360 Ri~~~~ 365 (1342)
|++++.
T Consensus 393 Ris~~~ 398 (422)
T 3d6k_A 393 RLAPSL 398 (422)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 999986
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.6e-18 Score=203.48 Aligned_cols=248 Identities=17% Similarity=0.144 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHhCCCCceE---ecCCHHHHHHHHHHHccCCCCEEEEee-ccCCccchhh-------HHhhhCCceeEEE
Q psy13354 75 EKIAINRLKKIFNAEAANV---QPHSGSQANQAVFFSVLNPGDTIMGMS-LQEGGHLTHG-------MMLNMSGKWFNSI 143 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi---~~~sGs~A~~~al~al~~pGD~Vlv~~-~~~~~~~s~~-------~~~~~~g~~~~~v 143 (1342)
.+++++++++++|.+.+.+ ++ ||++|+..++.++++|||+|++.. ..++.+.... ..+...|. +++
T Consensus 67 ~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~--~~~ 143 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI--GYN 143 (431)
T ss_dssp HHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC--EEE
T ss_pred HHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC--EEE
Confidence 4556669999999985554 66 999999999999999999999876 5555433222 12233455 666
Q ss_pred EecCCCCCCCCHHHHHHHHHhcCCeEEEEcC-CCCC-----cccCHHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCC
Q psy13354 144 CYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA-SAYS-----QYIDFERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPN 215 (1342)
Q Consensus 144 ~~~~~~~~~id~e~Le~~i~~~~~~liv~~~-s~~~-----~~~~l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~ 215 (1342)
.++.+++|.+|++++++++++ ++++|++++ ++|+ ...++++|+++|++ +|++||+|++|+.+.... .
T Consensus 144 ~v~~~~~~~~d~e~l~~~l~~-~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~----~ 218 (431)
T 3ht4_A 144 AVPLTEGGLVDFEAVAAAIHS-NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQ----E 218 (431)
T ss_dssp ECCBCTTSSBCHHHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSC----C
T ss_pred EeCCCCCCCcCHHHHHhhcCC-CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCC----C
Confidence 677777789999999999875 456666653 4444 34489999999999 999999999998765421 1
Q ss_pred CCC-CCcEEEecCCccCCC---CCeeEEEEechhHHHHhhccCCcccc--CCcHHHHHHHHHHHHHhccchHHHHHHHHH
Q psy13354 216 PVP-FADFITSTTHKSLRG---PRGGFILMKKKYKKIINSAVFPGIQG--GPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289 (1342)
Q Consensus 216 ~l~-~~Divv~S~sK~l~g---p~GG~iv~~~~l~~~l~~~~~~~~~~--~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~ 289 (1342)
+.. .+|++++|+||+++| +.||++++++++++.+.........+ ...++..+.+...... ....+.++..
T Consensus 219 ~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~----~~~~~~~~~~ 294 (431)
T 3ht4_A 219 PCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFF----LAPHVAGQAL 294 (431)
T ss_dssp GGGTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHH----HHHHHHHHHH
T ss_pred ccccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhh----hHHHHHHHHH
Confidence 222 369999999999755 67899999999988887632222111 1111111111111111 2345678889
Q ss_pred HHHHHHHHHHHhCCcEEeeCCCCCe-----EEEEEccCCCCCHHHHHHHHHH
Q psy13354 290 KNAKILSKILDQRGIRIVSGGTKSH-----IILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 290 ~~a~~l~~~L~~~g~~~~~~~~~~~-----~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
+++.++.+.|++.|+++.+. .++ ++.+.+++.....++++.+.+.
T Consensus 295 ~~a~~l~~~L~~~g~~v~p~--~~~~~~~li~~i~l~~~~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 295 KGAIFTAAFLEKLGMNTSPA--WNAPRTDLIQSVQFDDKDRMIAFCQAIQYA 344 (431)
T ss_dssp HHHHHHHHHHHHHTCCEESC--TTSCCSSSCCEEECCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCEecCC--CCCCCccEEEEEEeCCHHHHHHHHHHHHhc
Confidence 99999999999999877432 233 6777776432233455555443
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=198.83 Aligned_cols=334 Identities=16% Similarity=0.104 Sum_probs=207.2
Q ss_pred CccccccccccchH-HHHHHHHHHHhc-cCceeeeecC----C---CCcHHHHHHHhHHH-HhccccCCCCCCccCCcch
Q psy13354 1 MIIKNENLSKIDPK-IWEIILKEKQRQ-NNNIELIASE----N---YTSLAVMEAQGTLL-TNKYAEGYPGKRYYGGCKF 70 (1342)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~i~l~a~~----n---~l~~~v~eal~~~l-~~~~~~g~~~~~~~~~~~~ 70 (1342)
|..+-+++...++. +........... .+.|+|..|. + +.++.+.+++. .+ .... ...|+...+
T Consensus 1 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~------~~~Y~~~~G 73 (405)
T 3k7y_A 1 MDKLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYK------EKPYLLGNG 73 (405)
T ss_dssp CCCGGGGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCC------CCCCCTTSS
T ss_pred CcchhhcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCC------CCCCCCCCC
Confidence 43344566666654 444443332222 3568887774 2 23455777755 32 1111 123555666
Q ss_pred HHHHHHHHHHHHHHHhCCC----C-ceEecCCHHHHHHHHHHHccC--CCCEEEEeeccCCccchhhHHhhhCCceeEEE
Q psy13354 71 IDLIEKIAINRLKKIFNAE----A-ANVQPHSGSQANQAVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSI 143 (1342)
Q Consensus 71 ~~~Le~~~~~~la~~~g~~----~-~vi~~~sGs~A~~~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v 143 (1342)
..++++++.+++....+.. . .++.+.+|++|+..++.+++. | |+|+++++.++ .+...+...|. +++
T Consensus 74 ~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~---~~~~~~~~~g~--~~~ 147 (405)
T 3k7y_A 74 TEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYI---NHVNMIESRGF--NLK 147 (405)
T ss_dssp CHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCH---HHHHHHHTTTC--EEE
T ss_pred cHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCH---hHHHHHHHcCC--eEE
Confidence 7799998888876544432 2 234454888899999999877 8 99997775554 44555677777 455
Q ss_pred EecC--CCCCCCCHHHHHHHHHhc-CCeEEEEcCC-CCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCC--
Q psy13354 144 CYGL--NKKEKIDYKKVEYLAKKN-KPKLIIAGAS-AYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE-- 212 (1342)
Q Consensus 144 ~~~~--~~~~~id~e~Le~~i~~~-~~~liv~~~s-~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~-- 212 (1342)
++++ ++++.+|++.+++.+++. ++++++++++ +|| +...+++|+++|++||++||+||+|....+....
T Consensus 148 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~ 227 (405)
T 3k7y_A 148 YINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEED 227 (405)
T ss_dssp EECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGG
T ss_pred EEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccc
Confidence 5554 245889999999999763 3467777553 566 3336889999999999999999998754332100
Q ss_pred CCC-----CCCCCcEEEecCCccCCCCCe---eEEEE---echhHHHHhhc---cCCccccCCcHHHHHHHHHHHHHh--
Q psy13354 213 YPN-----PVPFADFITSTTHKSLRGPRG---GFILM---KKKYKKIINSA---VFPGIQGGPLMHVIAAKAVAFKEV-- 276 (1342)
Q Consensus 213 ~~~-----~l~~~Divv~S~sK~l~gp~G---G~iv~---~~~l~~~l~~~---~~~~~~~~~~~~~~~Aaa~al~~~-- 276 (1342)
... ......++++||||+| +++| ||+++ ++++++.+... .....+++++...+.+++.++.+.
T Consensus 228 ~~~~~~~~~~~~~~i~~~S~SK~~-~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l 306 (405)
T 3k7y_A 228 VLLIRKFEEKNIAFSVCQSFSKNM-SLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNL 306 (405)
T ss_dssp GHHHHHHHTTTCCEEEEEECTTTS-CCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHhcCCcEEEEeeCCccC-CCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHH
Confidence 000 0111247889999999 7677 99865 44554443211 011122334444444444443321
Q ss_pred ---ccchHHHHHHHHHHHHHHHHHHHH----hCC----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeecc
Q psy13354 277 ---LKPDFKIYQKQVVKNAKILSKILD----QRG----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 277 ---l~~~~~~~~~~l~~~a~~l~~~L~----~~g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
..++++.+++++.++++.+.+.|. +.| +.+. .+.+++++|+.++. +++..+ +++||.+.|.
T Consensus 307 ~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~-~p~gg~f~~~~l~~-----~~~~~L-~~~gV~v~p~- 378 (405)
T 3k7y_A 307 KLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVY-KKQRGLFSFVPLLA-----KIAEHL-KTHHIYIINN- 378 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGG-SSCCSSEEECGGGG-----GGTTTT-TTTTEECCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccc-cCCceEEEecCCCH-----HHHHHH-HHCCEeecCC-
Confidence 122456677889999999999999 776 3432 45678899987653 445566 7889998752
Q ss_pred CCCCCCCccccccccccccccccc
Q psy13354 346 IPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 346 ~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
-|++++..+..
T Consensus 379 -------------~Ris~a~~~~~ 389 (405)
T 3k7y_A 379 -------------GRINVSGITKN 389 (405)
T ss_dssp -------------SEEEGGGCCTT
T ss_pred -------------CeEEEeccCHH
Confidence 28888765443
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=198.07 Aligned_cols=315 Identities=14% Similarity=0.075 Sum_probs=186.5
Q ss_pred ccccccchH-HHHHHHHHHHhc-cCceeeeecC--CCC-cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHH
Q psy13354 6 ENLSKIDPK-IWEIILKEKQRQ-NNNIELIASE--NYT-SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAIN 80 (1342)
Q Consensus 6 ~~~~~~~~~-~~~~~~~~~~~~-~~~i~l~a~~--n~l-~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~ 80 (1342)
+++...+|. +........... .+.|+|..+. ++. ++.+.+++.++.. .....|....+..++++++++
T Consensus 18 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~-------~~~~~y~~~~g~~~lr~~ia~ 90 (409)
T 4eu1_A 18 GPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQATL-------GTNMDYAPVTGIASFVEEAQK 90 (409)
T ss_dssp ---------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTCCC-------CSCCCCCCTTCCHHHHHHHHH
T ss_pred hcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhcCc-------cccccCCCCCCcHHHHHHHHH
Confidence 455555554 444444333322 3457777665 332 2336666555411 111224444455677775555
Q ss_pred HHHHHhCCC------Cce--EecCCHHHHHHHH---HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC--
Q psy13354 81 RLKKIFNAE------AAN--VQPHSGSQANQAV---FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL-- 147 (1342)
Q Consensus 81 ~la~~~g~~------~~v--i~~~sGs~A~~~a---l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~-- 147 (1342)
++ .|.. +.+ ..+.+|+.|+..+ +.+++++||+|++..+.++ .+...+...|.. ++.++.
T Consensus 91 ~~---~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~---~~~~~~~~~g~~--~~~~~~~~ 162 (409)
T 4eu1_A 91 LC---FGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYP---NHESIFAKAGME--LTPYSYYD 162 (409)
T ss_dssp HH---HCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCT---HHHHHHHHTTCE--EEEECCEE
T ss_pred HH---cCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcH---hHHHHHHHcCCe--EEEEEeec
Confidence 54 2433 222 2244778887765 4456789999997775544 445555667774 455554
Q ss_pred CCCCCCCHHHHHHHHHh--cCCeEEEEcCCCCC--ccc---CHHHHHHHHHHcCCEEEEEcccchhhhhcC--CCCC---
Q psy13354 148 NKKEKIDYKKVEYLAKK--NKPKLIIAGASAYS--QYI---DFERFYHIAKNINSYFMVDMAHYAGLIAAG--EYPN--- 215 (1342)
Q Consensus 148 ~~~~~id~e~Le~~i~~--~~~~liv~~~s~~~--~~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~--~~~~--- 215 (1342)
++++.+|++++++.+++ .+++++++++++|| ... ++++|+++|++||++||+||+|..+.+... ....
T Consensus 163 ~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 242 (409)
T 4eu1_A 163 PATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRH 242 (409)
T ss_dssp TTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred CcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHH
Confidence 45678999999999974 34566776777776 222 477799999999999999999875443210 0000
Q ss_pred --CCCCCcEEEecCCccCCCCCe---eEE--E-Eech----hHHHHhhccCCccccCCcHHHHHHHHHHHHHh-----cc
Q psy13354 216 --PVPFADFITSTTHKSLRGPRG---GFI--L-MKKK----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-----LK 278 (1342)
Q Consensus 216 --~l~~~Divv~S~sK~l~gp~G---G~i--v-~~~~----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-----l~ 278 (1342)
......++++|+||++ |+.| ||+ + .+++ +++.+....... ..+++...+.++..++... ..
T Consensus 243 ~~~~~~~~i~~~S~SK~~-g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (409)
T 4eu1_A 243 LVDMVPNLIVAQSFSKNF-GLYGHRCGALHISTASAEEAKRLVSQLALLIRPM-YNNPPLYGAWVVSSILKDPQLTALWK 320 (409)
T ss_dssp HHTTSSCCEEEEECTTTS-SCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHhhCCcEEEEecCcccc-cCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhh-cCCCChHHHHHHHHHhCCHHHHHHHH
Confidence 0111247889999999 7667 996 4 5556 555555432222 2233344555544444321 02
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCC----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 279 PDFKIYQKQVVKNAKILSKILDQRG----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 279 ~~~~~~~~~l~~~a~~l~~~L~~~g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
+..++.++++.++++++.+.|.+.| +.+.. +.++++.|+.+ +.+++..+++++||.+.+
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~ll~~~gv~v~p 383 (409)
T 4eu1_A 321 KELKQMSSRIAEVRKRLVSELKACGSVHDWSHIE-RQVGMMAYTGL-----TREQVELLRSEYHIYMTL 383 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HSCSSEEECCC-----CHHHHHHHHHHHCEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCceEEEEeCC-----CHHHHHHHHHcCCEEEcC
Confidence 2466788899999999999999987 44432 45567777543 357788888888999874
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=187.43 Aligned_cols=211 Identities=22% Similarity=0.299 Sum_probs=164.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHc----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDK----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
..+|+++++|+.|++++||+.+++.+...+.. +..++.++|+||+|+||||+++++++.+++.
T Consensus 12 ~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~------------- 78 (334)
T 1in4_A 12 YDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN------------- 78 (334)
T ss_dssp -----CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-------------
T ss_pred HHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-------------
Confidence 44789999999999999999999998888764 3455669999999999999999999999742
Q ss_pred CCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC------
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP------ 527 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~------ 527 (1342)
+...++.......++..+... ...+.|++|||++.+.....+.|+..++...
T Consensus 79 ----------------~~~~sg~~~~~~~~l~~~~~~------~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~ 136 (334)
T 1in4_A 79 ----------------IHVTSGPVLVKQGDMAAILTS------LERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIG 136 (334)
T ss_dssp ----------------EEEEETTTCCSHHHHHHHHHH------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---
T ss_pred ----------------EEEEechHhcCHHHHHHHHHH------ccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeec
Confidence 112222222222344443322 2345799999999998877788877765431
Q ss_pred ------------CcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcH
Q psy13354 528 ------------KYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSM 594 (1342)
Q Consensus 528 ------------~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~l 594 (1342)
+.+.++.+++.+..+...+++|+ ..+.|.+++.+++.+++++.++..++.++++++..|++.++|++
T Consensus 137 ~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~ 216 (334)
T 1in4_A 137 KGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP 216 (334)
T ss_dssp ------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH
T ss_pred cCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh
Confidence 23567778888889999999999 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 595 RDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 595 r~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
|.++++|+++..++ .+.||.++|++++..
T Consensus 217 R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~ 249 (334)
T 1in4_A 217 RIAIRLTKRVRDMLTVVKADRINTDIVLKTMEV 249 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 99999999887665 346999999988754
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.3e-17 Score=198.55 Aligned_cols=287 Identities=12% Similarity=0.071 Sum_probs=186.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCCC----------ceEecCCHHHHHHHHHHHccCC---------CC--------E--
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAEA----------ANVQPHSGSQANQAVFFSVLNP---------GD--------T-- 115 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~~----------~vi~~~sGs~A~~~al~al~~p---------GD--------~-- 115 (1342)
|...+...++|+++++++++++|.+. ..++++|||+|+..++.++..+ || .
T Consensus 105 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~ 184 (486)
T 1js3_A 105 WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLV 184 (486)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEE
T ss_pred cccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEE
Confidence 45567788999999999999999874 2456669999999998776321 43 3
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCC-----eEEEEcCCCCC--cccCHHHHHH
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKP-----KLIIAGASAYS--QYIDFERFYH 188 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~-----~liv~~~s~~~--~~~~l~~I~~ 188 (1342)
|+++. +.|.+....+...|.. ++.++.+++|.+|+++|++++++.+. .+++++.++++ ...|+++|++
T Consensus 185 v~~s~---~~h~s~~~~~~~~G~~--v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~ 259 (486)
T 1js3_A 185 AYASD---QAHSSVERAGLIGGVK--LKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGP 259 (486)
T ss_dssp EEEET---TCCHHHHHHHHHHTCE--EEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred EEECC---CCcHHHHHHHHhCCCc--eEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHH
Confidence 55455 4455666666777874 55556677899999999999976542 35555554433 5569999999
Q ss_pred HHHHcCCEEEEEcccchhhhhcCCCCC---CCCCCcEEEecCCccCCCCCe-eEEEEechh--HHHHhhccCCcccc---
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAAGEYPN---PVPFADFITSTTHKSLRGPRG-GFILMKKKY--KKIINSAVFPGIQG--- 259 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~~~~~~---~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l--~~~l~~~~~~~~~~--- 259 (1342)
+|++||+||++|+||+.+.+....+.. .+..+|++++++||++++|.| |++++++.. .+.+.. ...+..+
T Consensus 260 la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~-~~~yl~~~~~ 338 (486)
T 1js3_A 260 ICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKL-DPVYLKHSHQ 338 (486)
T ss_dssp HHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------
T ss_pred HHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcC-CchhhCCCcc
Confidence 999999999999999877653222211 123479999999999977767 999987642 232211 0011000
Q ss_pred --------------CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC-
Q psy13354 260 --------------GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK- 323 (1342)
Q Consensus 260 --------------~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~- 323 (1342)
.+......++.+++.....+++++..++..++++++.+.|.+. |+++..++ ..+++.+.+++.
T Consensus 339 ~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~ 417 (486)
T 1js3_A 339 GSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRLKGSD 417 (486)
T ss_dssp -CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-CSSEEEEEESSCH
T ss_pred cccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-ceeEEEEEecChH
Confidence 0000112333444443444578888999999999999999986 78886533 345566666532
Q ss_pred CCCHHHHHHHHHHCCc-eeeeccCCCCCCCcccccccccccccc
Q psy13354 324 KITGKIAESILESANI-ICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI-~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
..+.++...+.++ |+ ++.+..+. +...+|++++..
T Consensus 418 ~~~~~l~~~L~~~-g~~~~~~~~~~-------~~~~lRi~~~~~ 453 (486)
T 1js3_A 418 GLNEALLERINSA-RKIHLVPCRLR-------GQFVLRFAICSR 453 (486)
T ss_dssp HHHHHHHHHHHHH-TSCBCEEEEET-------TEEEEEEECCCT
T ss_pred HHHHHHHHHHHhc-CCEEEEEEEEC-------CEEEEEEEeCCC
Confidence 1235666666666 64 44433211 145799997544
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=196.24 Aligned_cols=309 Identities=13% Similarity=0.082 Sum_probs=195.5
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCC---cchHHHHHHHHHHHHHHHhCCC--CceEecCCH-HHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG---CKFIDLIEKIAINRLKKIFNAE--AANVQPHSG-SQAN 102 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~---~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sG-s~A~ 102 (1342)
.+.+.+++..+|+.+++++.+.+.+ + ..++...|.. .....++.+++++++++++|.+ +.+++++|+ ++|+
T Consensus 4 ~~~~~~g~~~~p~~v~~a~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al 80 (360)
T 1w23_A 4 VFNFNAGPSALPKPALERAQKELLN-F--NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQF 80 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSS-S--TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred eEeecCCCcCCCHHHHHHHHHHhhh-h--ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHH
Confidence 3566777888888899998887742 2 1122222211 3344556677888999999986 355555466 8999
Q ss_pred HHHHHHccCC---CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHH-HHHhcCCeEEEEcCCCC
Q psy13354 103 QAVFFSVLNP---GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEY-LAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 103 ~~al~al~~p---GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~-~i~~~~~~liv~~~s~~ 177 (1342)
..++.+++.+ ||.|++..+ .+.+. ......| .+..+ +.++ ++.+|++++++ .+++ ++++++++++++
T Consensus 81 ~~~~~~l~~~~~~g~~vi~~~~---~~~~~-~~~~~~g-~~~~v--~~~~~~~~~d~~~l~~~~i~~-~~k~v~~~~~~n 152 (360)
T 1w23_A 81 TMLPMNLLTKGTIGNYVLTGSW---SEKAL-KEAKLLG-ETHIA--ASTKANSYQSIPDFSEFQLNE-NDAYLHITSNNT 152 (360)
T ss_dssp HHHHHHHCCTTCEEEEEECSHH---HHHHH-HHHHTTS-EEEEE--EECGGGTSCSCCCGGGCCCCT-TEEEEEEESEET
T ss_pred HHHHHHhcCCCCcccEEEecch---hHHHH-HHHHHhC-CeEEe--ecccccCcCCccchHhhccCC-CCCEEEEeCCCC
Confidence 9999999866 445553332 23221 2234456 54444 5443 55578888887 7644 456666655554
Q ss_pred C-ccc-CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc-
Q psy13354 178 S-QYI-DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV- 253 (1342)
Q Consensus 178 ~-~~~-~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~- 253 (1342)
+ +.. + +++++||++||+|++|+.+... . .+...|++++|+||++ |+.| |++++++++++.+....
T Consensus 153 ptG~~~~-----~i~~~~~~~li~D~a~~~~~~~----~-~~~~~di~~~s~sK~~-~~~G~G~~~~~~~~~~~~~~~~~ 221 (360)
T 1w23_A 153 IYGTQYQ-----NFPEINHAPLIADMSSDILSRP----L-KVNQFGMIYAGAQKNL-GPSGVTVVIVKKDLLNTKVEQVP 221 (360)
T ss_dssp TTTEECS-----SCCCCCSSCEEEECTTTTTSSC----C-CGGGCSEEEEETTTTT-SCTTCEEEEEEHHHHCSCCTTCC
T ss_pred Ccceecc-----cccccCCceEEEechhhcCCCC----c-CcccCCEEEEEccccc-CCCCcEEEEEcHHHHhhcccCCc
Confidence 4 332 4 3334899999999999876431 1 1222389999999999 6888 99999988776554422
Q ss_pred ----------CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCC-c-EEeeCC--CCCeEEEE
Q psy13354 254 ----------FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRG-I-RIVSGG--TKSHIILV 318 (1342)
Q Consensus 254 ----------~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g-~-~~~~~~--~~~~~v~i 318 (1342)
..+..++++...+.++..++...... +++++.+++.++++++.+.|.+.+ + .....+ ..++++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 301 (360)
T 1w23_A 222 TMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTF 301 (360)
T ss_dssp GGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEE
T ss_pred chhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEE
Confidence 11223455555555555555443333 577888999999999999999876 4 543112 22458888
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+++.....++... +.++||.+.+...+ .+++|++++..++
T Consensus 302 ~~~~~~~~~~~~~~-l~~~gi~~~~~~~~--------~~~iRis~~~~~~ 342 (360)
T 1w23_A 302 NLRNEELNQQFLAK-AKEQGFVGLNGHRS--------VGGCRASIYNAVP 342 (360)
T ss_dssp ECSSHHHHHHHHHH-HHHTTEESCBCCTT--------TCSEEEECCTTSC
T ss_pred EcCCCccHHHHHHH-HHHCCeeeecCCCC--------CCeEEEEecCCCC
Confidence 88643222345555 45569998654221 3579999987655
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=197.44 Aligned_cols=313 Identities=14% Similarity=0.108 Sum_probs=197.5
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc----c
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV----L 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al----~ 110 (1342)
...++.+++++.....+ .+...+...+...++|+.+++++++++|.+ ..+++++|||+|+..++.++ +
T Consensus 110 ~~~~~~v~~~~~~~~~n------~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~ 183 (497)
T 2qma_A 110 PPLMPAVAAEAMIAALN------QSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIA 183 (497)
T ss_dssp CCBHHHHHHHHHHHHHC------CCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhc------ccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHH
Confidence 34455566666554432 112234455678899999999999999985 45666669999999998873 2
Q ss_pred ---------CC------CC-EEEEeeccCCccchhhHHhhhCCcee-EEEEecCCCCCCCCHHHHHHHHHhc----C-Ce
Q psy13354 111 ---------NP------GD-TIMGMSLQEGGHLTHGMMLNMSGKWF-NSICYGLNKKEKIDYKKVEYLAKKN----K-PK 168 (1342)
Q Consensus 111 ---------~p------GD-~Vlv~~~~~~~~~s~~~~~~~~g~~~-~~v~~~~~~~~~id~e~Le~~i~~~----~-~~ 168 (1342)
.+ || .|+++.. .|.+....+...|.+. +++.++.++++.+|++++++.+.+. + +.
T Consensus 184 ~~~~~~~~~~~G~~~~~g~~~v~~s~~---~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~ 260 (497)
T 2qma_A 184 DKLSGHSIQKLGLPDYADKLRIVCSKK---SHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPF 260 (497)
T ss_dssp HHHHCCCHHHHCSCGGGGGEEEEEETT---SCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEE
T ss_pred HhhcccchhhcccccccCCeEEEECCC---chHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcce
Confidence 12 46 6775553 4445555556665533 3555577778999999999998764 2 33
Q ss_pred EEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC---CCCCCCcEEEecCCccCCCCCe-eEEEEe
Q psy13354 169 LIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP---NPVPFADFITSTTHKSLRGPRG-GFILMK 242 (1342)
Q Consensus 169 liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~---~~l~~~Divv~S~sK~l~gp~G-G~iv~~ 242 (1342)
+++++.++++ ...|+++|+++|++||+||++|++|+.+..... +. ..+..+|++++|+|||+++|.| |+++++
T Consensus 261 ~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~ 339 (497)
T 2qma_A 261 AIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTISCGALLVN 339 (497)
T ss_dssp EEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEES
T ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCcceEEEEEe
Confidence 5555444443 556999999999999999999999987765332 11 1123479999999999978877 888887
Q ss_pred ch-hHHHHhhccCCccccCC---cHHH-----------HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEE
Q psy13354 243 KK-YKKIINSAVFPGIQGGP---LMHV-----------IAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRI 306 (1342)
Q Consensus 243 ~~-l~~~l~~~~~~~~~~~~---~~~~-----------~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~ 306 (1342)
++ ..+.+.. ...+..+.. ..+. ..++..++..+..+++++..++..++++++.+.|.+. ++++
T Consensus 340 ~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 418 (497)
T 2qma_A 340 DKSNFKFLLH-HADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFEL 418 (497)
T ss_dssp CGGGGGGGCC---------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred CHHHHHHhcC-CchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence 54 3333321 111111110 0000 1223334444444577788899999999999999985 7887
Q ss_pred eeCCCCCeEEEEEccCCCCC-----HHHHHHHHHHCCceeeeccCCCCCCCccccccccccc-ccccc
Q psy13354 307 VSGGTKSHIILVDLRNKKIT-----GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGS-SAITT 368 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~~~~~-----~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~-~~~~t 368 (1342)
+.+ +..+++++.+.+.... .++...+.++ |+.+.+...+ .+ .+.+|+++ +..++
T Consensus 419 ~~~-~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~-G~~~~~~~~~---~g---~~~lRis~~~~~~t 478 (497)
T 2qma_A 419 LAE-PSLSTVLFRATHETADLDELNKALRLEALTR-GIAVLGETIV---DG---KTALKFTILNPCLT 478 (497)
T ss_dssp CSC-CSSSEEEEEECCSSSCHHHHHHHHHHHHHHH-TSCBCEEEEE---TT---EEEEEEECCCTTCC
T ss_pred EcC-CCceEEEEEEcCCccCHHHHHHHHHHHHHhC-CCEEEEeeEE---CC---EEEEEEEecCCCCC
Confidence 543 3456777777543211 2344555555 8877542211 11 35799998 55544
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-16 Score=195.63 Aligned_cols=250 Identities=13% Similarity=0.081 Sum_probs=168.0
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc-------C-CCC------EEEEeeccCCccchh
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL-------N-PGD------TIMGMSLQEGGHLTH 129 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~-------~-pGD------~Vlv~~~~~~~~~s~ 129 (1342)
+...+...++++++++++++++|.+ ..+++++|||+|+..++.++. . +|| .|+++... |.+.
T Consensus 140 ~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~---h~s~ 216 (515)
T 2jis_A 140 YEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKEC---HYSI 216 (515)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS---CTHH
T ss_pred hhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCc---cHHH
Confidence 4445677789999999999999987 455666699999999888763 2 575 77766644 4445
Q ss_pred hHHhhhCCcee-EEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEc
Q psy13354 130 GMMLNMSGKWF-NSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDM 201 (1342)
Q Consensus 130 ~~~~~~~g~~~-~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDe 201 (1342)
...+...|.+. +++.++.++++.+|++++++++.+. ++++|+++.++++ ...|+++|+++|++||+|+++|+
T Consensus 217 ~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~ 296 (515)
T 2jis_A 217 QKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDA 296 (515)
T ss_dssp HHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEeh
Confidence 55555666533 4555577778999999999999763 3566666555443 45699999999999999999999
Q ss_pred ccchhhhhcCCCCCCC---CCCcEEEecCCccCCCCCe-eEEEEech--hHHHHhhccCCcccc------------CC--
Q psy13354 202 AHYAGLIAAGEYPNPV---PFADFITSTTHKSLRGPRG-GFILMKKK--YKKIINSAVFPGIQG------------GP-- 261 (1342)
Q Consensus 202 a~~~g~~~~~~~~~~l---~~~Divv~S~sK~l~gp~G-G~iv~~~~--l~~~l~~~~~~~~~~------------~~-- 261 (1342)
+|+.+......+...+ ..+|++++|+|||+++|.| |+++++++ +.+.......++..+ +.
T Consensus 297 a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 376 (515)
T 2jis_A 297 AWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVV 376 (515)
T ss_dssp TTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCS
T ss_pred hhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCC
Confidence 9988776433222112 2479999999999977887 99998876 655422111111100 00
Q ss_pred -c--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEE
Q psy13354 262 -L--MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIIL 317 (1342)
Q Consensus 262 -~--~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~ 317 (1342)
. .....++.+++..+..++++++.++..++++++.+.|.+. |+++..++....+.+
T Consensus 377 ~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f 436 (515)
T 2jis_A 377 QCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCF 436 (515)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEE
T ss_pred CCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEE
Confidence 0 0001122222333333467888899999999999999986 888866443344333
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=195.75 Aligned_cols=307 Identities=12% Similarity=0.065 Sum_probs=189.5
Q ss_pred CceeeeecC----C---CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEe--cCCH
Q psy13354 28 NNIELIASE----N---YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQ--PHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~----n---~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~--~~sG 98 (1342)
+.+++..+. + +.++.+.+++.+.+.... ...|+...+..++++++++++.......+.+++ ++||
T Consensus 27 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~ 100 (394)
T 2ay1_A 27 GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET------TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGG 100 (394)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCC------CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHH
T ss_pred cccccccceeeCCCCCccCcHHHHHHHHHhcCCcc------cCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCc
Confidence 457777765 1 234668888877664311 112333344557777555544221001244554 5589
Q ss_pred HHHHHHHHHHcc--CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcC
Q psy13354 99 SQANQAVFFSVL--NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGA 174 (1342)
Q Consensus 99 s~A~~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~ 174 (1342)
++|+..++.++. .+||+|++..+.+++ ....+...|..+..+++..++++.+|++++++.+++. ...++++++
T Consensus 101 ~~a~~~~~~~~~~~~~gd~vl~~~p~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~ 177 (394)
T 2ay1_A 101 TGALRQALELARMANPDLRVFVSDPTWPN---HVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGC 177 (394)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEESCCHH---HHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESS
T ss_pred hhHHHHHHHHHHhcCCCCEEEEcCCCChh---HHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCC
Confidence 999999998774 499999987755543 4444555676544444332256778999999999864 245666677
Q ss_pred CCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhc---CCCCCCC---CCCcEEEecCCccCCCCCe---eEEE
Q psy13354 175 SAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAA---GEYPNPV---PFADFITSTTHKSLRGPRG---GFIL 240 (1342)
Q Consensus 175 s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~---~~~~~~l---~~~Divv~S~sK~l~gp~G---G~iv 240 (1342)
++|| +. .++++|+++|++||++||+||+|+.+.... ......+ ....++++|+||++ |+.| ||++
T Consensus 178 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~ 256 (394)
T 2ay1_A 178 CHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNF-GIYRERTGCLL 256 (394)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTT-TCGGGCEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCC-cCcCCccceEE
Confidence 6666 22 257889999999999999999997543311 0000001 11247789999999 6666 9999
Q ss_pred E---echhHHH----HhhccCCccccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhCC----c
Q psy13354 241 M---KKKYKKI----INSAVFPGIQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAKILSKILDQRG----I 304 (1342)
Q Consensus 241 ~---~~~l~~~----l~~~~~~~~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~~l~~~L~~~g----~ 304 (1342)
+ ++++++. +..... ..+++++...+.++..++... ..++.++..+++.++++++.+.|.+.+ +
T Consensus 257 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 335 (394)
T 2ay1_A 257 ALCADAATRELAQGAMAFLNR-QTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRF 335 (394)
T ss_dssp EECSSHHHHHHHHHHHHHHHH-TTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred EEeCCHHHHHHHHHHHHHHHh-hhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 8 5554333 321111 122223344444444443321 123677788899999999999998764 5
Q ss_pred EEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 305 RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 305 ~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.. +..++++|+.++ .+.+..+++++||.+.+ ++|++++.
T Consensus 336 ~~~~-~~~g~~~~~~~~-----~~~~~~~l~~~gi~v~~--------------~~Ris~~~ 376 (394)
T 2ay1_A 336 GFVA-EHRGMFSRLGAT-----PEQVKRIKEEFGIYMVG--------------DSRINIAG 376 (394)
T ss_dssp THHH-HCCSSEEECCCC-----HHHHHHHHHHHCEECCT--------------TCEEEGGG
T ss_pred eEEc-CCceEEEeeCCC-----HHHHHHHHHhCCEEecC--------------CCeEEeec
Confidence 5433 345677887653 35567777777999874 26998873
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-17 Score=195.95 Aligned_cols=308 Identities=11% Similarity=0.084 Sum_probs=192.4
Q ss_pred CceeeeecC----C---CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC---CCceEe--c
Q psy13354 28 NNIELIASE----N---YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA---EAANVQ--P 95 (1342)
Q Consensus 28 ~~i~l~a~~----n---~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~---~~~vi~--~ 95 (1342)
+.+++..+. + +.++.+.+++.+.+.... ...|+...+..++++++++++....+. ++.+++ +
T Consensus 27 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~ 100 (396)
T 2q7w_A 27 GKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET------TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQT 100 (396)
T ss_dssp -CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCC------CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CceecccccccCCCCCccCcHHHHHHHHhhcCccc------ccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEec
Confidence 457777775 1 344678898877664211 112333444567777555555332221 234444 6
Q ss_pred CCHHHHHHHHHHHc--cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEE
Q psy13354 96 HSGSQANQAVFFSV--LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLII 171 (1342)
Q Consensus 96 ~sGs~A~~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv 171 (1342)
+||++|+..++.++ +.+||+|++..+.+++ ....+...|..+..+++...+++.+|++++++.+.+. +.++++
T Consensus 101 ~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~ 177 (396)
T 2q7w_A 101 PGGTGALRVAADFLAKNTSVKRVWVSNPSWPN---HKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLF 177 (396)
T ss_dssp SHHHHHHHHHHHHHHHHSCCCEEEEEESCCTH---HHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEE
T ss_pred ccchhhHHHHHHHHHHhCCCCEEEEcCCCchh---HHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEE
Confidence 58999999998766 4699999987755544 4445566676444443322256778999999999764 246677
Q ss_pred EcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CCCCCC--C---CCCcEEEecCCccCCCCCe---e
Q psy13354 172 AGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GEYPNP--V---PFADFITSTTHKSLRGPRG---G 237 (1342)
Q Consensus 172 ~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~~--l---~~~Divv~S~sK~l~gp~G---G 237 (1342)
+++++|| + ..++++|+++|++||++||+||+|..+.+.. ....+. + ...+++++|+||++ |+.| |
T Consensus 178 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG 256 (396)
T 2q7w_A 178 HGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNF-GLYNERVG 256 (396)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT-TCGGGCCE
T ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccc-cccccccc
Confidence 6777766 2 2257899999999999999999987543321 000000 1 11358899999999 7667 9
Q ss_pred EEEE---ec----hhHHHHhhccCCccccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhCC--
Q psy13354 238 FILM---KK----KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAKILSKILDQRG-- 303 (1342)
Q Consensus 238 ~iv~---~~----~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~~l~~~L~~~g-- 303 (1342)
|+++ ++ ++++.+..... ..+++++...+.++..++... ..++.++..+++.++++++.+.|.+.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 335 (396)
T 2q7w_A 257 ACTLVAADSETVDRAFSQMKAAIR-ANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGAN 335 (396)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHH-TTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHh-hccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9987 44 34544443211 123333455555544443221 123566778889999999999999876
Q ss_pred --cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 304 --IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 304 --~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+++.. +..++++|+.++ .+.+..+++++||.+.+ ++|++++..
T Consensus 336 ~~~~~~~-~~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~--------------~~Ris~~~~ 380 (396)
T 2q7w_A 336 RDFSFII-KQNGMFSFSGLT-----KEQVLRLREEFGVYAVA--------------SGRVNVAGM 380 (396)
T ss_dssp SCCTHHH-HCCSSEEECCCC-----HHHHHHHHHHHCEECCT--------------TCEEEGGGC
T ss_pred CCcceec-CCCceEEEecCC-----HHHHHHHHHhcCeeecC--------------CceEEEeec
Confidence 55433 345677777543 35677777777999974 269988753
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=191.93 Aligned_cols=287 Identities=17% Similarity=0.174 Sum_probs=176.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEE
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSIC 144 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~ 144 (1342)
|.......++++ .+++++|.+++++++ ||++|+..++.++++||| +++...| +.+....+...|. +++.
T Consensus 71 y~~~~~~~~l~~----~la~~~~~~~~~~~~-~gt~a~~~al~~l~~~gd--i~~~~~~--~~~~~~~~~~~G~--~~~~ 139 (456)
T 2ez2_A 71 YAGSENFYHLER----TVQELFGFKHIVPTH-QGRGAENLLSQLAIKPGQ--YVAGNMY--FTTTRYHQEKNGA--VFVD 139 (456)
T ss_dssp SSSCHHHHHHHH----HHHHHHCCSEEEEES-SHHHHHHHHHHHHCCTTC--EEEESSC--CHHHHHHHHHTTC--EEEE
T ss_pred cccChhHHHHHH----HHHHHhCCCcEEEeC-CcHHHHHHHHHHhCCCCC--Eeccccc--cchhHHHHHHcCC--EEEE
Confidence 444555556665 888888987666555 999999999999999999 5455433 1233445566677 4455
Q ss_pred ecCCC----------CCCCCHHHHHHHHHhcC---CeEEEEcCCCC-C-c-ccC---HHHHHHHHHHcCCEEEEEcccch
Q psy13354 145 YGLNK----------KEKIDYKKVEYLAKKNK---PKLIIAGASAY-S-Q-YID---FERFYHIAKNINSYFMVDMAHYA 205 (1342)
Q Consensus 145 ~~~~~----------~~~id~e~Le~~i~~~~---~~liv~~~s~~-~-~-~~~---l~~I~~la~~~gi~LIvDea~~~ 205 (1342)
++.++ ++.+|++++++++++.+ .++++++++++ + + ..+ +++|+++|++||++||+||+|+.
T Consensus 140 v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~ 219 (456)
T 2ez2_A 140 IVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCV 219 (456)
T ss_dssp CBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHH
T ss_pred ecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccc
Confidence 55442 26789999999998755 36677765555 4 2 234 99999999999999999999987
Q ss_pred h---------hhhcCCCCC-----CCCCCcEEEecCCccCCCCCeeEEEE-echhHHHHhhccC---Cc-cccCCcHHHH
Q psy13354 206 G---------LIAAGEYPN-----PVPFADFITSTTHKSLRGPRGGFILM-KKKYKKIINSAVF---PG-IQGGPLMHVI 266 (1342)
Q Consensus 206 g---------~~~~~~~~~-----~l~~~Divv~S~sK~l~gp~GG~iv~-~~~l~~~l~~~~~---~~-~~~~~~~~~~ 266 (1342)
| ....+.... .....|+++.|++|+++.+.||++++ ++++++.+..... .+ .+.+.+....
T Consensus 220 g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (456)
T 2ez2_A 220 ENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDM 299 (456)
T ss_dssp HHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHH
T ss_pred cccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCCceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHH
Confidence 5 222222110 01235888888899874344799998 5677776543211 11 1112222222
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC---CCCCHHH-----HHHHHHHCC
Q psy13354 267 AAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN---KKITGKI-----AESILESAN 338 (1342)
Q Consensus 267 ~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~---~~~~~~~-----~~~ll~~~G 338 (1342)
.+++.++.+... +.+.++..++.+++.+.|.+.|+++.. +..++++|+.+.. .....++ ...+++++|
T Consensus 300 ~a~a~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~g~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 375 (456)
T 2ez2_A 300 EAMAIGLREAMQ---YEYIEHRVKQVRYLGDKLKAAGVPIVE-PVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETG 375 (456)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHTTCCBCS-SCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHhcCCCcccc-CCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcC
Confidence 332344443331 345667777888999999887876543 4567888988742 1122233 555546679
Q ss_pred ceeeec-c--CCCCC---CC-cccccccccccccc
Q psy13354 339 IICNKN-S--IPNDP---EK-PYFTSGIRLGSSAI 366 (1342)
Q Consensus 339 I~v~~~-~--~p~~~---~~-~~~~~~lRi~~~~~ 366 (1342)
|.+.+. . .+..+ .. .-..+++|++++..
T Consensus 376 v~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~ 410 (456)
T 2ez2_A 376 VRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRR 410 (456)
T ss_dssp EECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT
T ss_pred eeeecccccccccCccccccccCCCCeEEEEeCCC
Confidence 986542 1 11110 00 00125799998863
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=192.98 Aligned_cols=283 Identities=16% Similarity=0.158 Sum_probs=175.9
Q ss_pred CceeeeecC-CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHH
Q psy13354 28 NNIELIASE-NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~-n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~a 105 (1342)
..+.|..+. ...++.+++++.+.+...+ +++... |.......+....+++++++++|.+ +.+++++||++|+..+
T Consensus 18 ~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 94 (432)
T 3a9z_A 18 RKVYMDYNATTPLEPEVIQAVTEAMKEAW--GNPSSS-YVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLV 94 (432)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHHCC--SCTTCS-SHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHH
T ss_pred CcEEeeCCccCCCCHHHHHHHHHHHHHhc--CCCccC-cHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHH
Confidence 334454443 4567789999998885422 444322 2223334455667888999999986 5667776999999999
Q ss_pred HHHcc--------CCCCEEEEeeccCCcc----------chh---hH-HhhhCCceeEEEEecCCC-CCCCCHHHHHHHH
Q psy13354 106 FFSVL--------NPGDTIMGMSLQEGGH----------LTH---GM-MLNMSGKWFNSICYGLNK-KEKIDYKKVEYLA 162 (1342)
Q Consensus 106 l~al~--------~pGD~Vlv~~~~~~~~----------~s~---~~-~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i 162 (1342)
+.+++ ++||+|++..+.++.+ .+. +. .....|. +++.++.++ ++.+|++++++.+
T Consensus 95 ~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~i 172 (432)
T 3a9z_A 95 IHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVA--EVTFVPVSKVNGQVEVEDILAAV 172 (432)
T ss_dssp HHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSC--EEEEECCCTTTSSCCHHHHHHTC
T ss_pred HHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCc--EEEEEecCcccCCcCHHHHHHhc
Confidence 99886 5898887755544332 111 11 1233466 455556654 6789999999988
Q ss_pred HhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcC----------CEEEEEcccchhhhhcCCCCCCC-CCCcEEEecCCc
Q psy13354 163 KKNKPKLIIAGASAYS--QYIDFERFYHIAKNIN----------SYFMVDMAHYAGLIAAGEYPNPV-PFADFITSTTHK 229 (1342)
Q Consensus 163 ~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~g----------i~LIvDea~~~g~~~~~~~~~~l-~~~Divv~S~sK 229 (1342)
++ +++++++++++++ ...++++|.++|+++| ++||+|++|+.|.. ..... ..+|++++|+||
T Consensus 173 ~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~----~~~~~~~~~d~~~~s~~K 247 (432)
T 3a9z_A 173 RP-TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR----RVDVEDLGVDFLTIVGHK 247 (432)
T ss_dssp CT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS----CCCHHHHCCSEEEEEGGG
T ss_pred cC-CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc----ccChhhcCCCEEEEehhH
Confidence 65 4677777776665 4559999999999999 99999999976532 11110 136899999999
Q ss_pred cCCCCCeeEEEEechh-HHHHhhccC------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 230 SLRGPRGGFILMKKKY-KKIINSAVF------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 230 ~l~gp~GG~iv~~~~l-~~~l~~~~~------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
++ |+..|+++++++. ...+..... .+..++++.+.+.++..++... .+++++..+++.++++++.+.|.+.
T Consensus 248 ~~-g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 325 (432)
T 3a9z_A 248 FY-GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV-SENCETYEAHMRDIRDYLEERLEAE 325 (432)
T ss_dssp TT-CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 98 7777999999865 222221110 1112344455555555454433 3367888899999999999999883
Q ss_pred -CcEEee-CC-----CCCeEEEEEccC
Q psy13354 303 -GIRIVS-GG-----TKSHIILVDLRN 322 (1342)
Q Consensus 303 -g~~~~~-~~-----~~~~~v~i~~~~ 322 (1342)
|+.+.. .+ ....++++.+.+
T Consensus 326 ~g~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (432)
T 3a9z_A 326 FGKRIHLNSRFPGVERLPNTCNFSIQG 352 (432)
T ss_dssp HGGGEEESSCCTTCCBCTTEEEEEECS
T ss_pred cCCcEEEeCCCCcccCCCCEEEEEeCC
Confidence 655432 11 112356666665
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=195.95 Aligned_cols=259 Identities=10% Similarity=0.087 Sum_probs=172.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEecCCHH-HHHHHHHHHccC--CCCEEEEeeccCCccchhhHHhhhCCceeEEEEe-
Q psy13354 70 FIDLIEKIAINRLKKIFNAEAANVQPHSGS-QANQAVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICY- 145 (1342)
Q Consensus 70 ~~~~Le~~~~~~la~~~g~~~~vi~~~sGs-~A~~~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~- 145 (1342)
...++++++++++++++|.+..+++++||| .++..++.++.. +|+.|+++...| .+....+...|..+..++.
T Consensus 130 ~~~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h---~s~~~~~~~~G~~~~~v~~~ 206 (456)
T 2z67_A 130 IMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASH---KSPIKAVSFVGMNMRLVETV 206 (456)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCC---HHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCc---HHHHHHHHHcCCCceEEEEe
Confidence 366788889999999999984366666888 577766666533 678888666444 4456666777876555543
Q ss_pred cCCCCCCCCHHHHHHHH-Hh---cCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CCCCCCCC
Q psy13354 146 GLNKKEKIDYKKVEYLA-KK---NKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GEYPNPVP 218 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i-~~---~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~~l~ 218 (1342)
+.+++|.+|++++++++ ++ .++.+++.+.++++ ...|+++|+++|+++|+++++|+||+....+. ......+.
T Consensus 207 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~ 286 (456)
T 2z67_A 207 LDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFK 286 (456)
T ss_dssp EETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHT
T ss_pred ccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhC
Confidence 22677899999999999 43 35566666666554 55699999999999999999999876433211 00000001
Q ss_pred -CCcEEEecCCccCCCCCe-eEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q psy13354 219 -FADFITSTTHKSLRGPRG-GFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKIL 295 (1342)
Q Consensus 219 -~~Divv~S~sK~l~gp~G-G~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l 295 (1342)
.+|++++|+||++++|.| |++++ ++++++.+......+ .+.++ ..++.+++......+++++.++..++++++
T Consensus 287 ~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~---~~~~~-~~~~~aal~~l~~~~~~~~~~~~~~~~~~l 362 (456)
T 2z67_A 287 YRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGR---ASATP-VVNTLVSLLSMGSKNYLELVKNQKNSKKLL 362 (456)
T ss_dssp SCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSC---BCSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCC---CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999877877 99999 467777775432221 11122 333344444444457788899999999999
Q ss_pred HHHHHhC----CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 296 SKILDQR----GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 296 ~~~L~~~----g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
.+.|.+. |+.+.. +. +++++.+.......++...|.++ ||
T Consensus 363 ~~~L~~~~~~~g~~v~~-~~--~~v~~~~~~~~~~~~l~~~L~~~-gi 406 (456)
T 2z67_A 363 DELLNDLSKKTGGKFLD-VE--SPIASCISVNSDPVEIAAKLYNL-RV 406 (456)
T ss_dssp HHHHHHHHHHSSCCBCC-CC--CSSEEEEECSSCHHHHHHHHHHT-TE
T ss_pred HHHHHhcccccCCEecC-CC--CeEEEEEecccHHHHHHHHHHHc-CC
Confidence 9999886 766543 23 55666662111124565555554 75
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.9e-17 Score=199.72 Aligned_cols=313 Identities=11% Similarity=0.063 Sum_probs=196.1
Q ss_pred ceeeeecCCCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHH-HHHHHhCC------CCceEecCCHHH
Q psy13354 29 NIELIASENYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAIN-RLKKIFNA------EAANVQPHSGSQ 100 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~-~la~~~g~------~~~vi~~~sGs~ 100 (1342)
.+.+..+++..+++ +.+++.+.+. ..+|+ ...+..++.+++.+ ++....+. ++.+++++|+++
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~~~---~~~Y~------~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~e 176 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDGIL---GCNYP------VPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTA 176 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHH---TCSCC------SSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHH
T ss_pred hhecccCCCCCCChHHHHHHHHhhh---cCCCC------CCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHH
Confidence 35555566555544 6677666653 12333 22222356655443 34443322 244555657788
Q ss_pred HHHHHHHH-----ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEc
Q psy13354 101 ANQAVFFS-----VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAG 173 (1342)
Q Consensus 101 A~~~al~a-----l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~ 173 (1342)
|+..++.+ +++|||+|+++.+.|+++. ......+.+.++++++.+ .+|.+|++.+++.+. .++++++++
T Consensus 177 al~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~---~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~k~v~l~ 252 (546)
T 2zy4_A 177 AMAYIFESLKLNGLLKAGDKVAIGMPVFTPYI---EIPELAQYALEEVAINADPSLNWQYPDSELDKLKD-PAIKIFFCV 252 (546)
T ss_dssp HHHHHHHHHHHTTSSCTTCEEEEEESCCHHHH---HHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS-TTEEEEEEE
T ss_pred HHHHHHHHhhhhhcCCCCCEEEEeCCCCccHH---HHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC-CCCeEEEEE
Confidence 99999887 5789999998886665443 222333333466666655 346799999988764 356777766
Q ss_pred CCCCC-c----ccCHHHHHHHH--HHcCCEEEEEcccchhhhhcCCCCCCCC---CCcEEEecCCccCCCCCe---eEEE
Q psy13354 174 ASAYS-Q----YIDFERFYHIA--KNINSYFMVDMAHYAGLIAAGEYPNPVP---FADFITSTTHKSLRGPRG---GFIL 240 (1342)
Q Consensus 174 ~s~~~-~----~~~l~~I~~la--~~~gi~LIvDea~~~g~~~~~~~~~~l~---~~Divv~S~sK~l~gp~G---G~iv 240 (1342)
+++|| + ..++++|+++| +++|++||+||+|+..... ..+... ..+++++||||++ |.+| ||++
T Consensus 253 ~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~---~~s~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~ 328 (546)
T 2zy4_A 253 NPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD---FQSLFAICPENTLLVYSFSKYF-GATGWRLGVVA 328 (546)
T ss_dssp SSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT---CCCHHHHCGGGEEEEEESTTTT-TCGGGCEEEEE
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc---CcCHHHhCCCCEEEEEeCcccc-CCCCcceEEEE
Confidence 77776 2 22578889999 7899999999999854321 111111 2468899999999 6666 9999
Q ss_pred Eech-hHHHHhhcc-----------------------------------CCccccCCcHHHHHHHH----HHHHHhccch
Q psy13354 241 MKKK-YKKIINSAV-----------------------------------FPGIQGGPLMHVIAAKA----VAFKEVLKPD 280 (1342)
Q Consensus 241 ~~~~-l~~~l~~~~-----------------------------------~~~~~~~~~~~~~~Aaa----~al~~~l~~~ 280 (1342)
++++ +++.+.... ..+...+.+.+.+.+++ .++.+....+
T Consensus 329 ~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~ 408 (546)
T 2zy4_A 329 AHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEY 408 (546)
T ss_dssp EESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHH
Confidence 9985 777663210 01222334455565542 2333222346
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC----------------CCCCHHHHHHHHHHCCceeeec
Q psy13354 281 FKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN----------------KKITGKIAESILESANIICNKN 344 (1342)
Q Consensus 281 ~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~----------------~~~~~~~~~~ll~~~GI~v~~~ 344 (1342)
.+..++.+.++++.+.+.|. .++.. .++.+++++|++++. ...+.+++..+++++||.+.|+
T Consensus 409 ~~~~r~~~~~r~~~l~~~L~-~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG 486 (546)
T 2zy4_A 409 KHTLKQLIRRRETTLYRELG-MPPLR-DENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPG 486 (546)
T ss_dssp HHHHHHHHHHHHHHHHGGGT-SSCCC-CTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEES
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCccc-CCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCc
Confidence 67778888888888888885 45432 234567888999752 0123456677777789999998
Q ss_pred cCCCCCCCccccccccccccc
Q psy13354 345 SIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 345 ~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
..++.. .+++|++++.
T Consensus 487 ~~F~~~-----~~~iRis~~~ 502 (546)
T 2zy4_A 487 RGFGSN-----RPSGRASLAN 502 (546)
T ss_dssp SCTTCS-----SCEEEEESSS
T ss_pred cccCCC-----CCeEEEEecc
Confidence 777542 3579999975
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.5e-17 Score=195.49 Aligned_cols=270 Identities=13% Similarity=0.079 Sum_probs=165.9
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCC----C
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK----E 151 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~----~ 151 (1342)
+++++++++ +|.++.+++++||++|+..++.+++++||+|++... +|.+....+...|..+..++...+++ +
T Consensus 60 ~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~---~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~~ 135 (446)
T 2x3l_A 60 LKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARN---VHKSVLHALDISQQEGHFIETHQSPLTNHYN 135 (446)
T ss_dssp HHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTT---CCHHHHHHHHHHTCCEEECEEEECTTTSSEE
T ss_pred HHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecC---ccHHHHHHHHHcCCeEEEEeCeeccccCcCC
Confidence 334559999 998877777867788999999999999999997664 45555555566676444443322544 5
Q ss_pred CCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCc
Q psy13354 152 KIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHK 229 (1342)
Q Consensus 152 ~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK 229 (1342)
.+|++.+ +.+ ++++++++++++. ...++++|+++|++||++||+|++|+......+....... .+|++++|+||
T Consensus 136 ~~d~~~l---~~~-~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~~S~~K 211 (446)
T 2x3l_A 136 KVNLSRL---NND-GHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHK 211 (446)
T ss_dssp EEEC-----------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEEECHHH
T ss_pred CCCHHHH---cCC-CceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEEEECCcc
Confidence 6788877 333 3455555556555 4559999999999999999999999862211111112222 26999999999
Q ss_pred cCCCCCe-eEEEEechhHH--HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEE
Q psy13354 230 SLRGPRG-GFILMKKKYKK--IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306 (1342)
Q Consensus 230 ~l~gp~G-G~iv~~~~l~~--~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~ 306 (1342)
+++|+.| |++++++++++ .+......+..++++....+++..+.......+.+.+.++..++++++++. |+++
T Consensus 212 ~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~----g~~~ 287 (446)
T 2x3l_A 212 TLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK----GFEM 287 (446)
T ss_dssp HSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----TCEE
T ss_pred ccccccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc----CCEE
Confidence 8877766 99999887643 332211122234444444444443333222212233556666666666665 7877
Q ss_pred eeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.... +...+|+.+++ ....++...+.+ +||.+... + .+.+|++++..++.+
T Consensus 288 ~~~~-~~~~l~i~~~~-~~~~~l~~~L~~-~GI~v~~~---g-------~~~iRi~~~~~~t~e 338 (446)
T 2x3l_A 288 LQVD-DPLKLLIKYEG-FTGHDIQNWFMN-AHIYLELA---D-------DYQALAILPLWHHDD 338 (446)
T ss_dssp EECS-STTEEEEECTT-SCHHHHHHHHHH-TTEEESEE---C-------SSCEEEECCCCCTTC
T ss_pred CcCC-CCeEEEEEeCC-cCHHHHHHHHHH-CCCEEEec---C-------CCEEEEEeecCCCHH
Confidence 6532 33468888762 223345555545 59998621 1 246999998766654
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-16 Score=182.54 Aligned_cols=312 Identities=12% Similarity=0.054 Sum_probs=206.4
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCc--cCCcchHHHHHHHHHHHHHHHhCCC--CceEe-cCCHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY--YGGCKFIDLIEKIAINRLKKIFNAE--AANVQ-PHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~--~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~-~~sGs~A~ 102 (1342)
+.+.+.+++..+++.|++++.+.+.+.+ +++.+.+ ........++.+.+++.+++++|++ +.++| ++|||+++
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~--~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~ 82 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCDYQ--GRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQF 82 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGG--GSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHhcc--cCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHH
Confidence 5577899999999999999998875433 3333321 1113344566677999999999985 35666 87999999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCC--CCHHHHHHHHHhcCCeEEEEcCCCCCcc
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEK--IDYKKVEYLAKKNKPKLIIAGASAYSQY 180 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~--id~e~Le~~i~~~~~~liv~~~s~~~~~ 180 (1342)
+.++..++ +||+++.......++. ........|..+..++++ +++. ++++. + +++++..+.+.++.+..+.
T Consensus 83 n~~~~~~~-~~~~~~~i~~~~~~~~-~~~~a~~~G~~v~~~~~~--~~g~~~~~~~~-~--l~~~t~lv~~~~~e~~tG~ 155 (361)
T 3m5u_A 83 AMIPMNLA-LNGVCEYANTGVWTKK-AIKEAQILGVNVKTVASS--EESNFDHIPRV-E--FSDNADYAYICSNNTIYGT 155 (361)
T ss_dssp HHHHHHHC-CSSCEEEEECSHHHHH-HHHHHHHTTCCEEEEEEC--TTTTSCSCCCC-C--CCTTSSEEEEESEETTTTE
T ss_pred HHHHHhcC-CCCeEEEEeCCHHHHH-HHHHHHHcCCceEEEecc--cCcCCCcCChh-h--cCCCCCEEEEeCCCCCcce
Confidence 99999998 8987643222111221 122345567766666554 3342 45555 3 5554333444433333333
Q ss_pred -cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc-c----
Q psy13354 181 -IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA-V---- 253 (1342)
Q Consensus 181 -~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~-~---- 253 (1342)
.+ . +++ +|+++++|++|++|...- .++..|++++|.|||+ ||.| |+++.++++.+.+.+. .
T Consensus 156 ~~~--~---i~~-~~~~~~vD~~q~~g~~~i-----d~~~~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~~~~~~~p~~~ 223 (361)
T 3m5u_A 156 QYQ--N---YPK-TKTPLIVDASSDFFSRKV-----DFSNIALFYGGVQKNA-GISGLSCIFIRKDMLERSKNKQIPSML 223 (361)
T ss_dssp ECS--S---CCC-CSSCEEEECGGGTTSSCC-----CCTTEEEEEEETTTTS-SCTTCEEEEEEHHHHHHHHTCCCCGGG
T ss_pred eCC--c---ccc-cCCEEEEEcccccCCCCC-----CcccCCEEEEechhcc-CCCccEEEEEcHHHHhhhcCCCCCcee
Confidence 23 1 334 499999999999887621 1223699999999999 8999 9999999887666431 0
Q ss_pred -------CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCC-c-EEeeCC--CCCeEEEEEcc
Q psy13354 254 -------FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRG-I-RIVSGG--TKSHIILVDLR 321 (1342)
Q Consensus 254 -------~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g-~-~~~~~~--~~~~~v~i~~~ 321 (1342)
.....++++.+...++..++..+.+. +++.+.++..+.++++.+.|.+.+ + .....+ ....++.+.++
T Consensus 224 ~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~ 303 (361)
T 3m5u_A 224 NYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIA 303 (361)
T ss_dssp CHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEES
T ss_pred ehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECC
Confidence 12234678888888888888777766 689999999999999999999987 5 543221 11346777777
Q ss_pred C-CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 322 N-KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 322 ~-~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+ ...+.++. ..|+++||.+.++.. . .+.+|+|+..++|.
T Consensus 304 ~~~~~~~~~~-~~L~~~gI~~~~g~~----~----~g~iRiS~~~~~t~ 343 (361)
T 3m5u_A 304 KNKDLEPLFV-KEAEEAGMIGLKGHR----I----LGGIRASIYNALNL 343 (361)
T ss_dssp SCTTHHHHHH-HHHHHTTEECCBCCT----T----TCSEEEECCTTSCH
T ss_pred CchhhhHHHH-HHHHHCCCEEecCCC----c----cCeEEEEccCCCCH
Confidence 5 33333444 556677999865321 1 24599999887663
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-16 Score=187.59 Aligned_cols=241 Identities=15% Similarity=0.167 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCC
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKI 153 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~i 153 (1342)
.+.+++++++++|.+++++++ +|++|+..++.+++++||+|+++...|++...... .+...|. +++.++.+
T Consensus 116 ~~~l~~~lA~l~g~~~~v~~~-sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~----- 187 (445)
T 1qgn_A 116 TVVLEEKISALEGAESTLLMA-SGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGI--TATVIDPA----- 187 (445)
T ss_dssp HHHHHHHHHHHHTCSEEEEES-CHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTC--EEEEECSS-----
T ss_pred HHHHHHHHHHHhCCCcEEEeC-CHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC--EEEEeCCC-----
Confidence 344555899999988777777 99999999999999999999988866655433222 3455566 44555554
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCcc
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKS 230 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~ 230 (1342)
|+++++++++++++++|++++++|+ ...|+++|+++|++||++||+|++|+.+... .++. .+|++++|+||+
T Consensus 188 d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-----~~~~~g~Div~~S~sK~ 262 (445)
T 1qgn_A 188 DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-----KALALGADLVLHSATKF 262 (445)
T ss_dssp CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-----CTTTTTCSEEEECTTTT
T ss_pred CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-----CccccCCEEEEECCccc
Confidence 8999999998765377777666666 4559999999999999999999999865431 2233 379999999999
Q ss_pred CCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-Cc-E
Q psy13354 231 LRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GI-R 305 (1342)
Q Consensus 231 l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~-~ 305 (1342)
+++.. +|++++++++++.+..... .+++...+..+.+.. ..++ .+....+++.+++.++.+.|.+. ++ .
T Consensus 263 ~gg~gd~~~G~l~~~~~l~~~l~~~~~--~~g~~~~~~~a~~~~---~~l~-~l~~r~~~~~~~a~~l~~~L~~~p~v~~ 336 (445)
T 1qgn_A 263 LGGHNDVLAGCISGPLKLVSEIRNLHH--ILGGALNPNAAYLII---RGMK-TLHLRVQQQNSTALRMAEILEAHPKVRH 336 (445)
T ss_dssp TTCSSSCCCEEEEECHHHHHHHHHHHH--HHCCCCCHHHHHHHH---HHGG-GHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred ccccccceEEEEEECHHHHHHHHHHHH--HhCCCCCHHHHHHHH---HhHH-HHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 96554 6999999988887765322 223323333333222 2222 45556677888899999999886 35 3
Q ss_pred EeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHC
Q psy13354 306 IVSGG---------------TKSHIILVDLRNKKITGKIAESILESA 337 (1342)
Q Consensus 306 ~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~ 337 (1342)
+..+. ..++++++.+++. .+....+++..
T Consensus 337 v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~---~~~~~~~l~~l 380 (445)
T 1qgn_A 337 VYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD---LLTTAKFVDAL 380 (445)
T ss_dssp EECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC---HHHHHHHHHHC
T ss_pred EECCCCCCCchHHHHHHhccCCCcEEEEEECCC---HHHHHHHHHhC
Confidence 33221 1356888888752 23345555543
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=186.69 Aligned_cols=310 Identities=12% Similarity=0.058 Sum_probs=205.5
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCc--cCCcchHHHHHHHHHHHHHHHhCCC--CceEe-cCCHHHHHHHHHH
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRY--YGGCKFIDLIEKIAINRLKKIFNAE--AANVQ-PHSGSQANQAVFF 107 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~--~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~-~~sGs~A~~~al~ 107 (1342)
.+.....|+.|++++.+.+.+.+. ++.+.+ ........++.+.+++.+++++|++ +.++| ++|||+++++++.
T Consensus 18 ~at~~~~p~~Vl~a~~~~~~~~~~--n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~ 95 (377)
T 3e77_A 18 LYFQSMLPHSVLLEIQKELLDYKG--VGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPL 95 (377)
T ss_dssp EECSCCCCHHHHHHHHHTSSSGGG--SSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHhccc--CCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHH
Confidence 455678899999999988865442 332211 1223445667777999999999987 34666 5689999999999
Q ss_pred HccCC--CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHH
Q psy13354 108 SVLNP--GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFE 184 (1342)
Q Consensus 108 al~~p--GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~ 184 (1342)
.++.+ ||+|++....+.++ .....++..|. .++.++.++++..+++.++..+++.+..+.++++.+.. ...|+
T Consensus 96 ~l~~~~~Gd~v~~~~~g~~~~-~~~~~a~~~G~--~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi- 171 (377)
T 3e77_A 96 NLIGLKAGRCADYVVTGAWSA-KAAEEAKKFGT--INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF- 171 (377)
T ss_dssp HHGGGSTTCEEEECCCSHHHH-HHHHHHTTTSE--EEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-
T ss_pred hccCCCCCCeEEEEECCHHHH-HHHHHHHHhCC--ceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchh-
Confidence 99865 99988644332222 12233445565 44445665555567777665555544444444444333 44466
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc---------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA--------- 252 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~--------- 252 (1342)
+|+++|+++++|.+|++|.. +++ ..+++++|.|||+ ||.| |+++.++++.+.+.+.
T Consensus 172 ----i~~~~~~~~~vD~~q~~g~~-------~id~~~~~~~~~s~~K~~-gp~G~g~l~~~~~~l~~~~~~~p~~~~~~~ 239 (377)
T 3e77_A 172 ----IPDVKGAVLVCDMSSNFLSK-------PVDVSKFGVIFAGAQKNV-GSAGVTVVIVRDDLLGFALRECPSVLEYKV 239 (377)
T ss_dssp ----CCCCTTCCEEEECTTTTTSS-------CCCGGGCSEEEEEGGGTT-SCTTCEEEEEETTSCSCCCTTSCGGGCHHH
T ss_pred ----hhccCCCEEEEEcccccCCC-------CCchhhcCEEEEeccccc-CCCccEEEEEcHHHHhhccCCCCchhhHHH
Confidence 47889999999999998876 333 2468899999999 8999 9999988653322110
Q ss_pred --cCCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC--C-CeEEEEEccCCCC
Q psy13354 253 --VFPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT--K-SHIILVDLRNKKI 325 (1342)
Q Consensus 253 --~~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~--~-~~~v~i~~~~~~~ 325 (1342)
......++|+.+...++..++..+.+. +++.+.++..+.++++.+.|.+. |+.+..... . ..++.+.+++...
T Consensus 240 ~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~ 319 (377)
T 3e77_A 240 QAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKG 319 (377)
T ss_dssp HHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTC
T ss_pred HhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCC
Confidence 112235688888888888888777666 68999999999999999999997 777532111 1 2356777775321
Q ss_pred ----CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 326 ----TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 326 ----~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+..+...+. ++||.+.++. .. .+.+|+|+...+|.
T Consensus 320 ~~~~~~~~l~~l~-~~Gi~~~~g~----~~----~g~iRiS~~~~~t~ 358 (377)
T 3e77_A 320 DDALEKRFLDKAL-ELNMLSLKGH----RS----VGGIRASLYNAVTI 358 (377)
T ss_dssp CHHHHHHHHHHHH-HTTEESCBCC----TT----TCSEEEECCTTSCH
T ss_pred chhHHHHHHHHHH-HCCcEEeCCC----Cc----CCEEEEECCCCCCH
Confidence 123444444 5699987542 11 24699999887663
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.8e-16 Score=188.70 Aligned_cols=307 Identities=18% Similarity=0.209 Sum_probs=183.9
Q ss_pred HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC----CCCE-
Q psy13354 41 LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN----PGDT- 115 (1342)
Q Consensus 41 ~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~----pGD~- 115 (1342)
+.+.+++.+.+.. + ...|+......++++ ++++++|.+++++++ ||++|+..++.+++. |||+
T Consensus 55 ~~v~~a~~~~~~~----~---~~~y~~~~~~~~l~~----~la~~~~~~~v~~t~-ggt~A~~~al~~~~~~~~~~Gd~~ 122 (467)
T 1ax4_A 55 NAMSDHQWAAMIT----G---DEAYAGSRNYYDLKD----KAKELFNYDYIIPAH-QGRGAENILFPVLLKYKQKEGKAK 122 (467)
T ss_dssp CCEEHHHHHHHHT----C---CCCSSSCHHHHHHHH----HHHHHHCCCEEEEES-SHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhh----c---ccccccCccHHHHHH----HHHHHcCCCcEEEcC-CcHHHHHHHHHHHHHhhccCCCcc
Confidence 4566666665531 1 112444455556655 888888887655555 999999999999988 9998
Q ss_pred --EEEeeccCCccchhhHHhhhCCceeEEEEecC--C------CCCCCCHHHHHHHHHhc---CCeEEEEcCCCCCc---
Q psy13354 116 --IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL--N------KKEKIDYKKVEYLAKKN---KPKLIIAGASAYSQ--- 179 (1342)
Q Consensus 116 --Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~--~------~~~~id~e~Le~~i~~~---~~~liv~~~s~~~~--- 179 (1342)
|+++. .+ +......+...|..+..++.+. + .++.+|++++++++++. ++++|++++++++.
T Consensus 123 ~~viv~~-~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~ 199 (467)
T 1ax4_A 123 NPVFISN-FH--FDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQ 199 (467)
T ss_dssp SCEEEES-SC--CHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSB
T ss_pred ceEEEec-cc--cchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCcc
Confidence 88662 22 2222334455565333322210 1 14578999999999863 45677766655442
Q ss_pred ---ccCHHHHHHHHHHcCCEEEEEcccch-hhh-------h-cCCCCCCC-----CCCcEEEecCCccCCCCCeeEEEEe
Q psy13354 180 ---YIDFERFYHIAKNINSYFMVDMAHYA-GLI-------A-AGEYPNPV-----PFADFITSTTHKSLRGPRGGFILMK 242 (1342)
Q Consensus 180 ---~~~l~~I~~la~~~gi~LIvDea~~~-g~~-------~-~~~~~~~l-----~~~Divv~S~sK~l~gp~GG~iv~~ 242 (1342)
..++++|+++|++||++||+|++|.. +.+ . .+.....+ ..+|++++|+||+++.+.||+++++
T Consensus 200 ~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~Gg~~~~~ 279 (467)
T 1ax4_A 200 PVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIR 279 (467)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEES
T ss_pred CCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcceEEEeC
Confidence 23688999999999999999999765 222 1 11110001 2358889999999954458888888
Q ss_pred -c-hhHHHHhhccC----CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEE
Q psy13354 243 -K-KYKKIINSAVF----PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHII 316 (1342)
Q Consensus 243 -~-~l~~~l~~~~~----~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v 316 (1342)
+ ++++.+..... ...+++.......+++.++..... ++..++..++++++.+.|.+.++++. .+..++++
T Consensus 280 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~ 355 (467)
T 1ax4_A 280 DNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLREAGIPIQ-YPTGGHAV 355 (467)
T ss_dssp SCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCBC-SSCCSSEE
T ss_pred CHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHhCCCCcc-cCCCceEE
Confidence 6 77776543211 112222223233333334433322 12334445778889999988777764 35667889
Q ss_pred EEE-------ccCCC-CCHHHHHHHHHHCCceeee-ccC-CCC-C--C--Ccccccccccccccc
Q psy13354 317 LVD-------LRNKK-ITGKIAESILESANIICNK-NSI-PND-P--E--KPYFTSGIRLGSSAI 366 (1342)
Q Consensus 317 ~i~-------~~~~~-~~~~~~~~ll~~~GI~v~~-~~~-p~~-~--~--~~~~~~~lRi~~~~~ 366 (1342)
|+. ++... ...++...++.++||.+.+ +.. ++. + + .+...+.+|++++..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~ 420 (467)
T 1ax4_A 356 FVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR 420 (467)
T ss_dssp EEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT
T ss_pred EEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccc
Confidence 988 33211 2345666664677999987 321 110 0 0 000135799998853
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-15 Score=180.92 Aligned_cols=245 Identities=18% Similarity=0.148 Sum_probs=166.0
Q ss_pred HHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCCH
Q psy13354 77 IAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKIDY 155 (1342)
Q Consensus 77 ~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id~ 155 (1342)
.+++.+++++|.+++++++ +|++|+..++.+++++||+|+++...|+++...+. .+...|. +++.++.+ |+
T Consensus 66 ~l~~~ia~~~g~~~~i~~~-~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~--~~~~v~~~-----d~ 137 (404)
T 1e5e_A 66 NLEGKIAFLEKTEACVATS-SGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGI--QVDFINTA-----IP 137 (404)
T ss_dssp HHHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTC--EEEEECTT-----ST
T ss_pred HHHHHHHHHhCCCcEEEeC-ChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCC--EEEEECCC-----CH
Confidence 3455888999988776666 99999999999999999999988877665443222 3556677 45555654 78
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHH-cCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccC
Q psy13354 156 KKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKN-INSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSL 231 (1342)
Q Consensus 156 e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~-~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l 231 (1342)
+++++.+++ +++++++++++|| ...++++|+++|++ +|++||+|++|+.+.+. .++. ..|++++|+||++
T Consensus 138 ~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~-----~~~~~~~di~~~S~sK~~ 211 (404)
T 1e5e_A 138 GEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT-----NPVDFGVDVVVHSATKYI 211 (404)
T ss_dssp THHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC-----CGGGGTCSEEEEETTTTT
T ss_pred HHHHHhcCC-CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhC-----CccccCCEEEEEcCcccc
Confidence 889988865 4567777666666 44599999999999 99999999999876542 1222 3699999999999
Q ss_pred CCCC---eeEEEEechhHH-HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cE-
Q psy13354 232 RGPR---GGFILMKKKYKK-IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IR- 305 (1342)
Q Consensus 232 ~gp~---GG~iv~~~~l~~-~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~- 305 (1342)
+++. ||++++++++++ .+......+..++.+...+.++..++. ......++..+++..+.+.+++.. +.
T Consensus 212 ~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~v~~ 286 (404)
T 1e5e_A 212 NGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLS-----TLNIRMKAESENAMKVAEYLKSHPAVEK 286 (404)
T ss_dssp TCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred CCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHh-----HHHHHHHHHHHHHHHHHHHHHhCCCeeE
Confidence 6654 499999998887 777654333022222333333332321 234456677888888888887753 22
Q ss_pred EeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 306 IVSGG---------------TKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 306 ~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
+..+. ..+.++.+.+++. .+.+..++++.||.+..
T Consensus 287 ~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~l~~~~i~~~~ 336 (404)
T 1e5e_A 287 VYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG---FEGAKKLLDNLKLITLA 336 (404)
T ss_dssp EECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH---HHHHHHHHHTCSSSEES
T ss_pred EECCCCCCCccHHHHHhhCCCCceEEEEEeCCC---HHHHHHHHHhCCCceec
Confidence 11110 1144555577542 35567788888995544
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-16 Score=184.78 Aligned_cols=292 Identities=13% Similarity=0.099 Sum_probs=182.7
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCC------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNP------ 112 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~p------ 112 (1342)
.+|.+.+++.+.+. .+.. .... ...+...+ +++++++++|.+.+++++ ||++|+..++.++..+
T Consensus 53 ~~p~v~~a~~~~~~-~~~~--~~~~--~~~~~~~~----l~~~la~~~g~~~v~~~~-~gt~a~~~al~~~~~~~~~~~~ 122 (392)
T 3ruy_A 53 RHPKIINALIDQAN-RVTL--TSRA--FHSDQLGP----WYEKVAKLTNKEMVLPMN-TGAEAVETAIKTARRWAYDVKK 122 (392)
T ss_dssp TCHHHHHHHHHHHT-TCSC--CCTT--SEETTHHH----HHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHH-hccc--cccc--cCCHHHHH----HHHHHHHhcCCCEEEEeC-cHHHHHHHHHHHHHHhhhhccC
Confidence 46789999888874 3321 1111 22333444 445889999966555554 9999999999987644
Q ss_pred ----CCEEEEeeccCCccchhhHHhhhC-Cc-------eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 113 ----GDTIMGMSLQEGGHLTHGMMLNMS-GK-------WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 113 ----GD~Vlv~~~~~~~~~s~~~~~~~~-g~-------~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
+|+|++....+.+........... +. ......++.+ |++++++++++ ++++|++++++++
T Consensus 123 ~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~-~~~~v~~~~~~nptG 196 (392)
T 3ruy_A 123 VEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAITP-NTAAFILEPIQGEAG 196 (392)
T ss_dssp CCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCCT-TEEEEEECSSBSTTT
T ss_pred CCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhcc-CeEEEEEeCccCCCC
Confidence 679998777765544332221111 00 0113333433 89999998873 5677777676665
Q ss_pred cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC--CCeeEEEEechhHHHH
Q psy13354 179 QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG--PRGGFILMKKKYKKII 249 (1342)
Q Consensus 179 ~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g--p~GG~iv~~~~l~~~l 249 (1342)
...+ +++|+++|++||++||+||+|+. ....+.... ... ..|+++ +||+++| ..+|++++++++++.+
T Consensus 197 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~d~~~--~SK~l~gG~~~~G~~~~~~~~~~~~ 273 (392)
T 3ruy_A 197 INIPPAGFLKEALEVCKKENVLFVADEIQTG-LGRTGKVFACDWDNVTPDMYI--LGKALGGGVFPISCAAANRDILGVF 273 (392)
T ss_dssp SBCCCTTHHHHHHHHHHTTTCEEEEECTTTT-TTTTSSSSGGGGGTCCCSEEE--ECGGGGTTTSCCEEEEECHHHHTTC
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEeechhC-CCccccchhhhccCCCCCEEE--EchhhhCChhhhEEEEECHHHHhhh
Confidence 3334 99999999999999999999952 111121111 111 247764 5699966 4569999999888777
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC---cEEeeCCCCCeEEEEEccCCCCC
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG---IRIVSGGTKSHIILVDLRNKKIT 326 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g---~~~~~~~~~~~~v~i~~~~~~~~ 326 (1342)
........++ .+...++++..++. ... . ++..+++.++++++.+.|.+.+ +.... ..++++++.++. ..
T Consensus 274 ~~~~~~~~~~-~~~~~~~a~~~~l~-~~~-~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~~--~~ 345 (392)
T 3ruy_A 274 EPGSHGSTFG-GNPLACAVSIAALE-VLE-E-EKLTERSLQLGEKLVGQLKEIDNPMITEVR--GKGLFIGIELNE--PA 345 (392)
T ss_dssp CTTSSCCSST-TCHHHHHHHHHHHH-HHH-H-TTHHHHHHHHHHHHHHHHTTCCCTTEEEEE--EETTEEEEEESS--CS
T ss_pred ccCCcCCCCC-CCHHHHHHHHHHHH-HHH-h-hhHHHHHHHHHHHHHHHHHHhcCCCceEEE--eeeeEEEEEEcc--hH
Confidence 6544433333 33444444444443 332 1 4567888999999999998875 33222 235566777765 45
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.++...++ ++||.+.+.. .+++|++++..++
T Consensus 346 ~~l~~~l~-~~gi~v~~~~----------~~~iRi~~~~~~~ 376 (392)
T 3ruy_A 346 RPYCEQLK-AAGLLCKETH----------ENVIRIAPPLVIS 376 (392)
T ss_dssp HHHHHHHH-TTTEECCCBT----------TTEEEECCCTTCC
T ss_pred HHHHHHHH-HCCcEEecCC----------CCEEEEECCCCCC
Confidence 56666666 5699998541 3569999776554
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=175.44 Aligned_cols=209 Identities=14% Similarity=0.181 Sum_probs=158.6
Q ss_pred HHHhhccCC-CCcccccc---chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 379 VVLARKYRP-SNFNTLIG---QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 379 ~~l~~k~~p-~~f~~lvG---q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
.++..+++| .+|++++| ++.+++.+...+..+ ..+.++|+||+|+|||++++.+++.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~~~~------------- 80 (242)
T 3bos_A 15 LSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARANELE------------- 80 (242)
T ss_dssp CEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHHHTT-------------
T ss_pred cCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHcC-------------
Confidence 467788888 78999997 357788888888765 346789999999999999999999987421
Q ss_pred CCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHH--HHHHHHhhcCCCC--cE
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHA--FNAMLKTLEEPPK--YI 530 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~--~~~Ll~~Le~p~~--~~ 530 (1342)
..+..++..... ..+.+. .....++.+|+|||++.+.... .+.|+.+++.... ..
T Consensus 81 -------------~~~~~~~~~~~~--~~~~~~------~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~ 139 (242)
T 3bos_A 81 -------------RRSFYIPLGIHA--SISTAL------LEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRG 139 (242)
T ss_dssp -------------CCEEEEEGGGGG--GSCGGG------GTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSC
T ss_pred -------------CeEEEEEHHHHH--HHHHHH------HHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCC
Confidence 112233322110 000011 1122456799999999986544 6778887765322 22
Q ss_pred EEEEEeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHH
Q psy13354 531 KFILATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQ 603 (1342)
Q Consensus 531 vlIl~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~k 603 (1342)
.+|++++... ...+.+.+|+ ..++|.+++.+++.+++..+++..++.+++++++.+++.++||+|.+.+.+++
T Consensus 140 ~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 140 SLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp EEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred eEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 4677776443 4558999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc---CCCCCHHHHHHHhc
Q psy13354 604 AINYS---SEKITLNSMQEMLS 622 (1342)
Q Consensus 604 l~~~~---~~~It~e~V~~~v~ 622 (1342)
+..++ +..||.++|++++.
T Consensus 220 ~~~~a~~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 220 LDKASMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHT
T ss_pred HHHHHHHhCCCCcHHHHHHHhh
Confidence 88776 45699999998874
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-17 Score=191.19 Aligned_cols=314 Identities=11% Similarity=0.029 Sum_probs=195.6
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCc--cCCcchHHHHHHHHHHHHHHHhCCC--CceEe-cCCHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY--YGGCKFIDLIEKIAINRLKKIFNAE--AANVQ-PHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~--~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~-~~sGs~A~ 102 (1342)
+...+.+++..+++.|++++.+.+.+.+ +++.+.+ ........++.+.+++.+++++|++ +.++| ++|||+++
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~--~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~ 104 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWH--GLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQF 104 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-------------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHH
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhcc--ccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHH
Confidence 3455788899999999999988775433 2332211 1112223345566888999999986 34566 57999999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCC-CCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEK-IDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~-id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+.++..++.+||+|++....+.++. ........| .+..+ +.+ +.|. +++++++.++++.+..+.+.++.+.+
T Consensus 105 n~ai~~l~~~gd~v~~~~~~~~~~~-~~~~a~~~G-~v~~v--~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG 180 (386)
T 3qm2_A 105 AGVPLNLLGDKTTADYVDAGYWAAS-AIKEAKKYC-APQII--DAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDG 180 (386)
T ss_dssp HHHHHHHCTTCCEEEEEESSHHHHH-HHHHHTTTS-EEEEE--ECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTT
T ss_pred HHHHHhccCCCCeEEEEeCCHHHHH-HHHHHHHhC-CeEEE--ecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcC
Confidence 9999999999999876543332221 122334556 55555 444 3443 67777777666544334333333333
Q ss_pred cc-cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc--
Q psy13354 179 QY-IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA-- 252 (1342)
Q Consensus 179 ~~-~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~-- 252 (1342)
.. .|+++|. +|+++++|++|++|.. +++ ..|++++|.|||+ ||.| |+++.++++.+.+.+.
T Consensus 181 ~~i~pi~~i~-----~g~~~~vDa~qs~g~~-------pidv~~~~~~~~s~hK~l-GP~G~g~l~v~~~~~~~~~~~~p 247 (386)
T 3qm2_A 181 IAIDETPDFG-----PEVVVTADFSSTILSA-------PLDVSRYGVIYAGAQKNI-GPAGLTLVIVREDLLGKAHESCP 247 (386)
T ss_dssp EECCCCCCCC-----TTCCEEEECTTTTTSS-------CCCGGGCSEEEEETTTTT-CCTTEEEEEEEGGGCSCCCTTSC
T ss_pred EecCchhhhc-----CCCEEEEEcccccCCC-------CCCccccCEEEEeccccc-CCCccEEEEECHHHHhhhcccCC
Confidence 32 4787775 7999999999998876 333 2468889999999 8999 9999998763322211
Q ss_pred ---------cCCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCCcEEee-CC--CCCeEEEEE
Q psy13354 253 ---------VFPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRGIRIVS-GG--TKSHIILVD 319 (1342)
Q Consensus 253 ---------~~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~--~~~~~v~i~ 319 (1342)
.....+++++.+...++..++....+. +++.+.++..+.++++.+.|.+.|+.... .+ ....++.+.
T Consensus 248 ~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~ 327 (386)
T 3qm2_A 248 SILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQ 327 (386)
T ss_dssp GGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEE
T ss_pred cHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEE
Confidence 012223567777788888887766665 68888999999999999999988763221 11 112467777
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+++...+..+... ++++||.+..+... .+++|+|+...+|.
T Consensus 328 ~~~~~~~~~~~~~-L~~~gI~~~~g~~~--------~~~iRiS~~~~~t~ 368 (386)
T 3qm2_A 328 LADNTLDKVFLEE-SFAAGLHALKGHRV--------VGGMRASIYNAMPI 368 (386)
T ss_dssp ESSGGGHHHHHHH-HHHTTEECCBCCTT--------TCSEEEECCTTSCH
T ss_pred CCCccccHHHHHH-HHHCCCEEeCCCCC--------cCeEEEEcCCCCCH
Confidence 7753334455555 56779998643111 14599998877663
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-15 Score=180.50 Aligned_cols=313 Identities=12% Similarity=-0.028 Sum_probs=187.0
Q ss_pred ceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH
Q psy13354 29 NIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN 102 (1342)
Q Consensus 29 ~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~ 102 (1342)
.+.+.++. ++ .+|.+++++.+.+.. +. .++... |. . ....++++.++++++.+ +.+++++||++|+
T Consensus 45 ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~-~~-~~~~~~-~~-~----~~~~~l~~~la~~~~~~~~~v~~~~ggtea~ 116 (429)
T 1s0a_A 45 LVDGMSSWWAAIHGYNHPQLNAAMKSQIDA-MS-HVMFGG-IT-H----APAIELCRKLVAMTPQPLECVFLADSGSVAV 116 (429)
T ss_dssp EEESSTTTTTCTTCBSCHHHHHHHHHHHHH-CS-CCCCSS-EE-C----HHHHHHHHHHHHHSCTTCCEEEEESSHHHHH
T ss_pred EEEcCccHhhccCCCCCHHHHHHHHHHHHh-cc-cccccc-cC-C----HHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Confidence 35554544 23 467799999988853 21 111111 11 1 23344555888888744 4566666999999
Q ss_pred HHHHHHcc---C----CCCEEEEeeccCCccchhhHHhh---------h--CCceeEEEEecCC---CC-CCCCHHHHHH
Q psy13354 103 QAVFFSVL---N----PGDTIMGMSLQEGGHLTHGMMLN---------M--SGKWFNSICYGLN---KK-EKIDYKKVEY 160 (1342)
Q Consensus 103 ~~al~al~---~----pGD~Vlv~~~~~~~~~s~~~~~~---------~--~g~~~~~v~~~~~---~~-~~id~e~Le~ 160 (1342)
..++.++. + |||+|++....+.++........ . ...++..++++.. +. +.+|++++++
T Consensus 117 ~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 196 (429)
T 1s0a_A 117 EVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFAR 196 (429)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHH
T ss_pred HHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHH
Confidence 99998653 2 69999988765554322111100 0 0112355554431 12 2579999999
Q ss_pred HHHh--cCCeEEEEcCC-CCC-c-ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCCCCC-CCcEEEecCCc
Q psy13354 161 LAKK--NKPKLIIAGAS-AYS-Q-YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPNPVP-FADFITSTTHK 229 (1342)
Q Consensus 161 ~i~~--~~~~liv~~~s-~~~-~-~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~~l~-~~Divv~S~sK 229 (1342)
++++ .+++++++++. +++ + ..+ +++|+++|++||++||+||+|. +|..+......... ..|++ |+||
T Consensus 197 ~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK 274 (429)
T 1s0a_A 197 LMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGK 274 (429)
T ss_dssp HHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECG
T ss_pred HHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEE--Eecc
Confidence 9875 34566666555 443 3 334 9999999999999999999996 33211100001111 24766 5679
Q ss_pred cCCCC-Ce-eEEEEechhHHHHhhcc-----CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 230 SLRGP-RG-GFILMKKKYKKIINSAV-----FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 230 ~l~gp-~G-G~iv~~~~l~~~l~~~~-----~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
+++++ .+ |++++++++++.+.... ....+ +.+.+.++++.+++....+ ..+.+++.++++++.+.|.+.
T Consensus 275 ~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~-~~n~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l 350 (429)
T 1s0a_A 275 ALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTF-MGNPLACAAANASLAILES---GDWQQQVADIEVQLREQLAPA 350 (429)
T ss_dssp GGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTT-TTCHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHGGG
T ss_pred cccCCCccceEEEeCHHHHHHhhcCCCcccccCCCC-CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHH
Confidence 99654 34 99999999888886531 11122 2234445554444433322 235677888899999999874
Q ss_pred ----CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 303 ----GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 303 ----g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++.... ..+.++|+.++......++...++ ++||.+.+. .+++|++++..++.
T Consensus 351 ~~~~~~~~~~--~~g~~~~~~~~~~~~~~~l~~~l~-~~Gi~v~~~-----------~~~iRis~~~~~t~ 407 (429)
T 1s0a_A 351 RDAEMVADVR--VLGAIGVVETTHPVNMAALQKFFV-EQGVWIRPF-----------GKLIYLMPPYIILP 407 (429)
T ss_dssp GGCTTEEEEE--EETTEEEEEESSCBCHHHHHHHHH-HTTEECCCB-----------TTEEEECCCTTCCH
T ss_pred hcCCCEEEEE--EeeEEEEEEECCcccHHHHHHHHH-HCCCEEecc-----------CCEEEEECCCCCCH
Confidence 333222 234578888875333445666666 569999752 24699998766554
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-16 Score=186.28 Aligned_cols=243 Identities=17% Similarity=0.189 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCC
Q psy13354 74 IEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEK 152 (1342)
Q Consensus 74 Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~ 152 (1342)
..+++++++++++|.+.+++++ ||++|+..++.++++|||+|+++...|++...... .....|. +++.++.+
T Consensus 82 ~~~~l~~~la~~~g~~~~~~~~-sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~--~~~~v~~~---- 154 (414)
T 3ndn_A 82 TVSVFEERLRLIEGAPAAFATA-SGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGV--QTVFVDGD---- 154 (414)
T ss_dssp HHHHHHHHHHHHHTCSEEEEES-SHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTC--EEEEECTT----
T ss_pred HHHHHHHHHHHHHCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCc--EEEEeCCC----
Confidence 3444555999999988776666 99999999999999999999988877665443332 2344666 45555655
Q ss_pred CCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCc
Q psy13354 153 IDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHK 229 (1342)
Q Consensus 153 id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK 229 (1342)
|++++++++++ ++++|+++++++| ...++++|+++|++||++||+|++|+.+.... ++. .+|+++.|+||
T Consensus 155 -d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~-----~~~~g~div~~S~sK 227 (414)
T 3ndn_A 155 -DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQ-----GFPLGVDVVVYSGTK 227 (414)
T ss_dssp -CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC-----CGGGTCSEEEEETTT
T ss_pred -CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCC-----chhcCCCeEeccCCc
Confidence 89999999876 4566666666666 44599999999999999999999998765421 223 36999999999
Q ss_pred cCCCCC---eeEEEEechhHH-HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-Cc
Q psy13354 230 SLRGPR---GGFILMKKKYKK-IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GI 304 (1342)
Q Consensus 230 ~l~gp~---GG~iv~~~~l~~-~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~ 304 (1342)
+++++. ||+++++++.+. .++.... ..+....+..+++.. ..+ +.+....++..+++.++.+.|.+. ++
T Consensus 228 ~l~~~G~~~~G~vv~~~~~~~~~l~~~~~--~~g~~~~~~~a~~~~---~~l-~~l~~r~~~~~~~a~~l~~~L~~~p~v 301 (414)
T 3ndn_A 228 HIDGQGRVLGGAILGDREYIDGPVQKLMR--HTGPAMSAFNAWVLL---KGL-ETLAIRVQHSNASAQRIAEFLNGHPSV 301 (414)
T ss_dssp TTTCSSCCCCEEEEECHHHHTTHHHHHHH--HHCCCCCHHHHHHHH---HHG-GGHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred cccCCCCceEEEEEECHHHHHHHHHHHHH--HcCCCCCHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 995423 599999987665 4442211 112222333333222 222 256667788899999999999875 34
Q ss_pred EEeeCCC----------------CCeEEEEEccCCC-CCHHHHHHHHHH
Q psy13354 305 RIVSGGT----------------KSHIILVDLRNKK-ITGKIAESILES 336 (1342)
Q Consensus 305 ~~~~~~~----------------~~~~v~i~~~~~~-~~~~~~~~ll~~ 336 (1342)
..+..|. .+.++++.+++.. .+.+....+++.
T Consensus 302 ~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~ 350 (414)
T 3ndn_A 302 RWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDK 350 (414)
T ss_dssp EEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHH
T ss_pred eEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHh
Confidence 3322111 3568899886520 002344555544
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-15 Score=180.20 Aligned_cols=292 Identities=15% Similarity=0.084 Sum_probs=181.5
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHH---cc---CC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFS---VL---NP 112 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~a---l~---~p 112 (1342)
.++.+.+++.+.+.. + +..... |. .....+ +++.+++++|.++.+++++||++|+..++.+ +. +|
T Consensus 45 ~~~~v~~a~~~~~~~-~--~~~~~~-y~-~~~~~~----l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~ 115 (375)
T 2eh6_A 45 AYPKLTEALKEQVEK-L--LHVSNL-YE-NPWQEE----LAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGK 115 (375)
T ss_dssp SCHHHHHHHHHHHHH-C--SCCCTT-BC-CHHHHH----HHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHh-c--cccCcc-cC-CHHHHH----HHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCC
Confidence 567799998888753 2 122222 32 233334 4558899999843445555999999999875 35 78
Q ss_pred C-CEEEEeeccCCccchhhHHhhh-----CCce---eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-ccc-
Q psy13354 113 G-DTIMGMSLQEGGHLTHGMMLNM-----SGKW---FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYI- 181 (1342)
Q Consensus 113 G-D~Vlv~~~~~~~~~s~~~~~~~-----~g~~---~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~- 181 (1342)
| |+|++....++++......... .+.. ..+..++. .|++++++.+++ +++++++++++++ +..
T Consensus 116 g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~ 189 (375)
T 2eh6_A 116 NKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDE-ETAGIIIEVIQGEGGVNE 189 (375)
T ss_dssp CCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCT-TEEEEEECSEETTTTSEE
T ss_pred CCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhcC-CeEEEEEeCccCCCCCcC
Confidence 8 9999888776554332222110 0110 01222232 489999988764 5677777776665 333
Q ss_pred C----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC
Q psy13354 182 D----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 182 ~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~ 254 (1342)
+ +++|.++|++||++||+|++|+ ++..+.......+. ..|++ |+||+++++.+ |++++++++++.+.....
T Consensus 190 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~--s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~ 267 (375)
T 2eh6_A 190 ASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI--ALAKGLGGGVPIGAILAREEVAQSFTPGSH 267 (375)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSCCEEEEEEHHHHTTCCTTSC
T ss_pred CCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE--EEcccccCCCCeEEEEEcHHHHhhhcCCCC
Confidence 6 9999999999999999999998 33221100011111 25777 55699965444 999999887776655322
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
...+++ +...+.++. +..+... ...+++.++++++.+.|.+.+..... ..++++|++++. ...++...++
T Consensus 268 ~~~~~~-~~~~~~~~~-~~l~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~--~~g~~~~~~~~~--~~~~~~~~l~ 337 (375)
T 2eh6_A 268 GSTFGG-NPLACRAGT-VVVDEVE----KLLPHVREVGNYFKEKLKELGKGKVK--GRGLMLGLELER--ECKDYVLKAL 337 (375)
T ss_dssp CCSSTT-CHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHTTSSEEE--EETTEEEEECSS--CCHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCce--EEEEEEEEEEcC--cHHHHHHHHH
Confidence 333333 233333333 3333322 56788899999999999887653322 346788988865 2556777776
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+ +||.+.+.. .+++|++++..++
T Consensus 338 ~-~gi~~~~~~----------~~~iRi~~~~~~~ 360 (375)
T 2eh6_A 338 E-KGLLINCTA----------GKVLRFLPPLIIQ 360 (375)
T ss_dssp H-TTEECEEET----------TTEEEECCCTTCC
T ss_pred H-CCCEEecCC----------CCEEEEECCCCCC
Confidence 5 699998641 3469999875444
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=183.66 Aligned_cols=307 Identities=10% Similarity=0.018 Sum_probs=189.5
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEe-cCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQ-PHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~-~~sGs~A~~~ 104 (1342)
..+.+.+++..+++.+++++.+... ...+ .....+...++.+++++++++++|.+ +.+++ ++||++|+..
T Consensus 40 ~~~~~~~~~~~~~~~v~~a~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~ 112 (398)
T 2fyf_A 40 RDGRFGSGPSKVRLEQLQTLTTTAA-----ALFG--TSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDA 112 (398)
T ss_dssp SSCBCCSSSCCCCHHHHHGGGTTTT-----TTTT--SCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHH
T ss_pred CCccccCCCCCCCHHHHHHHhhcCC-----CccC--cCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHH
Confidence 3466778888888889998765210 0000 00111223456667888999999986 35666 7799999999
Q ss_pred HHHHccCCC-CEEEEeeccCCccchhhHHhhhC--CceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--c
Q psy13354 105 VFFSVLNPG-DTIMGMSLQEGGHLTHGMMLNMS--GKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--Q 179 (1342)
Q Consensus 105 al~al~~pG-D~Vlv~~~~~~~~~s~~~~~~~~--g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~ 179 (1342)
++.++++|| +.| ....++.. ........ |..+..++ .+++...+.+ ++ .++++|++++++++ .
T Consensus 113 ~~~~l~~~gv~~v--~~~~~~~~--~~~~~~~~~~g~~~~~v~--~~~g~~~~~~-----i~-~~~~~v~~~~~~nptG~ 180 (398)
T 2fyf_A 113 AAFGLIDKRSLHL--TYGEFSAK--FASAVSKNPFVGEPIIIT--SDPGSAPEPQ-----TD-PSVDVIAWAHNETSTGV 180 (398)
T ss_dssp HHHHTCSSCEEEE--ECSHHHHH--HHHHHHHCTTSCCCEEEE--CCTTCCCCCC-----CC-TTCSEEEEESEETTTTE
T ss_pred HHHHhcCCCeEEE--eCCHHHHH--HHHHHHHhCCCCceEEEe--cCCCCCCCcc-----cc-CCCCEEEEeCcCCCcce
Confidence 999999887 333 22222111 11122333 55445554 4322222321 23 34566666555544 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc-----
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV----- 253 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~----- 253 (1342)
..++++|.++ +|++||+|++|+.+.... .+..+|++++|+||+++++.| |++++++++++.++...
T Consensus 181 ~~~~~~i~~~---~~~~vivD~a~~~~~~~~-----~~~~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~ 252 (398)
T 2fyf_A 181 AVAVRRPEGS---DDALVVIDATSGAGGLPV-----DIAETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRW 252 (398)
T ss_dssp ECCCCCCTTC---C-CEEEEECTTTTTTSCC-----CGGGCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCC
T ss_pred ecchHHhhhh---cCCeEEEEeccccCCccc-----CcccCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCC
Confidence 4477777766 899999999998764311 122369999999999944434 89999998877764210
Q ss_pred ---------------CCccccCCcHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHhC-CcEEee-CC--CCC
Q psy13354 254 ---------------FPGIQGGPLMHVIAAKAVAFKEVLKPD-FKIYQKQVVKNAKILSKILDQR-GIRIVS-GG--TKS 313 (1342)
Q Consensus 254 ---------------~~~~~~~~~~~~~~Aaa~al~~~l~~~-~~~~~~~l~~~a~~l~~~L~~~-g~~~~~-~~--~~~ 313 (1342)
....+++++...+.++..++......+ +++..+++.++++++.+.|.+. |+++.. .+ ...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 332 (398)
T 2fyf_A 253 VPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQ 332 (398)
T ss_dssp CCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCS
T ss_pred CCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCC
Confidence 012334555666666666655443333 7788899999999999999987 788753 12 123
Q ss_pred eEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 314 HIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 314 ~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+++|+.++......++...+.++ ||.+.+...+ ...+.+|++++..++
T Consensus 333 ~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~~------~~~~~iRis~~~~~t 380 (398)
T 2fyf_A 333 VVGTIDFVDDVDAGTVAKILRAN-GIVDTEPYRK------LGRNQLRVAMFPAVE 380 (398)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHT-TCBCCSCCTT------TCSSEEEEECCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHC-CcEEecCccc------CCCCEEEEEecCCCC
Confidence 48888886533344566666555 9999764111 113579999997655
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-14 Score=174.22 Aligned_cols=245 Identities=14% Similarity=0.154 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCC
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKID 154 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id 154 (1342)
..+++.+++++|.++.++++ +|++|+..++.+++.+||+|++....|++..... ......|. +++.++.+ |
T Consensus 55 ~~l~~~la~~~~~~~~i~~~-sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~-----d 126 (386)
T 1cs1_A 55 DVVQRALAELEGGAGAVLTN-TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFVDQG-----D 126 (386)
T ss_dssp HHHHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSC--EEEEECTT-----C
T ss_pred HHHHHHHHHHhCCCcEEEeC-CHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCC--EEEEeCCC-----C
Confidence 33555899999988777776 8899999999999999999998886665433222 22345565 45555554 8
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccC
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSL 231 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l 231 (1342)
++++++.+++ +++++++++++++ ...++++|.++|++||+++|+|++|+.+.... +.. ..|++++|+||++
T Consensus 127 ~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-----~~~~~~di~~~s~sK~~ 200 (386)
T 1cs1_A 127 EQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN-----PLALGADLVLHSCTKYL 200 (386)
T ss_dssp HHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-----GGGGTCSEEEEETTTTT
T ss_pred HHHHHHhhcc-CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-----ccccCceEEEEcCcccc
Confidence 9999999986 4566666666555 44599999999999999999999998765421 122 3699999999999
Q ss_pred CCCCe---eEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEE
Q psy13354 232 RGPRG---GFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRI 306 (1342)
Q Consensus 232 ~gp~G---G~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~ 306 (1342)
+++.+ |++++++ ++++.+......+. +..++..++++.... . .+....+++.++++.+.+.|.+.+ +..
T Consensus 201 ~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~l---~-~~~~~~~~~~~~~~~l~~~l~~~~~l~~ 274 (386)
T 1cs1_A 201 NGHSDVVAGVVIAKDPDVVTELAWWANNIG--VTGGAFDSYLLLRGL---R-TLVPRMELAQRNAQAIVKYLQTQPLVKK 274 (386)
T ss_dssp TCSSCCCCEEEEESSHHHHHHHHHHHHHHT--CBCCHHHHHHHHHHH---T-THHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred cCCCCceeEEEEeCcHHHHHHHHHHHHhcC--CCCCHHHHHHHHhcc---c-HHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 66654 9999987 78777765433322 212233222222222 2 445566778888888988888753 222
Q ss_pred e-eC---------------CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 307 V-SG---------------GTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 307 ~-~~---------------~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
. .+ ...++++.+.+++. .+.+..++++.||.+..
T Consensus 275 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~ 324 (386)
T 1cs1_A 275 LYHPSLPENQGHEIAARQQKGFGAMLSFELDGD---EQTLRRFLGGLSLFTLA 324 (386)
T ss_dssp EECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC---HHHHHHHHHTCSSSEEB
T ss_pred EECCCCCCCccHHHHHHhcCCCceEEEEEECCC---HHHHHHHHHhCCcceEc
Confidence 1 11 11256677776542 45566677778998874
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-15 Score=176.46 Aligned_cols=244 Identities=16% Similarity=0.138 Sum_probs=161.4
Q ss_pred HHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEecCCCCCCCCHH
Q psy13354 78 AINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLNKKEKIDYK 156 (1342)
Q Consensus 78 ~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~~~~~id~e 156 (1342)
+++.+++++|.+++++++ +|++|+..++.+++++||+|+++...|+++...... ....|. +++.++. .|++
T Consensus 3 l~~~la~~~g~~~~i~~~-sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~-----~d~~ 74 (331)
T 1pff_A 3 LEGKIAKLEHAEACAATA-SGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGV--EVDFIDM-----AVPG 74 (331)
T ss_dssp HHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTC--EEEEECT-----TSTT
T ss_pred HHHHHHHHhCCCeEEEeC-ChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCC--EEEEeCC-----CCHH
Confidence 455899999998666666 889999999999999999999888766554333221 244566 4444454 3788
Q ss_pred HHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHH-cCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCC
Q psy13354 157 KVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKN-INSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRG 233 (1342)
Q Consensus 157 ~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~-~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~g 233 (1342)
++++.+++ +++++++++++++ ...++++|.++|++ +|+++|+|++|+.|...... ....|++++|+||++++
T Consensus 75 ~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~----~~~~d~~~~s~~K~~~~ 149 (331)
T 1pff_A 75 NIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL----DLGVDIVVHSATKYING 149 (331)
T ss_dssp HHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG----GGTCSEEEEETTTTTSS
T ss_pred HHHHhhcC-CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh----hcCCcEEEEECccccCC
Confidence 88888764 4566666666555 44599999999999 99999999999887652111 11369999999999966
Q ss_pred CC---eeEEEEec-hhHHHHhhccCC-ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-----
Q psy13354 234 PR---GGFILMKK-KYKKIINSAVFP-GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG----- 303 (1342)
Q Consensus 234 p~---GG~iv~~~-~l~~~l~~~~~~-~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g----- 303 (1342)
+. +|++++++ ++++.+...... +. ++.+...+.++..++ + ......++..++...+.+.+.+..
T Consensus 150 ~~~r~~G~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l-~----~~~~~~~~~~~~~~~~~~~l~~~~~l~~~ 223 (331)
T 1pff_A 150 HTDVVAGLVCSRADIIAKVKSQGIKDITG-AIISPHDAWLITRGT-L----TLDMRVKRAAENAQKVAEFLHEHKAVKKV 223 (331)
T ss_dssp SSSCCCEEEEECHHHHHHHHHTCCCCCCC-CCCCHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHCTTCCCE
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhhcC-CCCCHHHHHHHHcCc-c----hHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 54 58999998 898888875444 22 223232332222222 2 223334556666666666665431
Q ss_pred ----------cEEeeC--CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeec
Q psy13354 304 ----------IRIVSG--GTKSHIILVDLRNKKITGKIAESILESANIICNKN 344 (1342)
Q Consensus 304 ----------~~~~~~--~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~ 344 (1342)
+++..+ ...++++.+.+. +.+.+..++++.||.+.+.
T Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gI~~~~~ 272 (331)
T 1pff_A 224 YYPGLPDHPGHEIAKKQMKMFGSMIAFDVD----GLEKAKKVLDNCHVVSLAV 272 (331)
T ss_dssp ECTTSTTSTTHHHHHHHCSSCCSEEEEECS----SHHHHHHHHHTCSSSEECS
T ss_pred ECCCCCCCccHHHHHhhCCCCceEEEEEEC----CHHHHHHHHHhCCCceecc
Confidence 111110 113457777765 3456777778889987654
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=185.26 Aligned_cols=305 Identities=13% Similarity=0.099 Sum_probs=185.2
Q ss_pred ceeeeecCCC-----CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENY-----TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~-----l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.|.+.++.++ .+|.+.+++.+.+.. +. .... .+ ..+...++++ ++++++|.+.+++ ++||++|+.
T Consensus 78 ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~-~~--~~~~-~~-~~~~~~~l~~----~la~~~g~~~v~~-~~sGseA~~ 147 (439)
T 2oat_A 78 YFDFLSSYSAVNQGHCHPKIVNALKSQVDK-LT--LTSR-AF-YNNVLGEYEE----YITKLFNYHKVLP-MNTGVEAGE 147 (439)
T ss_dssp EEESSGGGGTTTTCBTCHHHHHHHHHHHTT-CS--CCCT-TS-EESSHHHHHH----HHHHHHTCSEEEE-ESSHHHHHH
T ss_pred EEEccCCcccccCCCCCHHHHHHHHHHHHh-cC--cccC-cc-CCHHHHHHHH----HHHHhcCCCEEEE-eCCHHHHHH
Confidence 3555554432 457799999888743 22 1111 12 2333444444 7888888665544 559999999
Q ss_pred HHHHHcc---------CCC-CEEEEeeccCCccchhhHHhhhCC-------c---eeEEEEecCCCCCCCCHHHHHHHHH
Q psy13354 104 AVFFSVL---------NPG-DTIMGMSLQEGGHLTHGMMLNMSG-------K---WFNSICYGLNKKEKIDYKKVEYLAK 163 (1342)
Q Consensus 104 ~al~al~---------~pG-D~Vlv~~~~~~~~~s~~~~~~~~g-------~---~~~~v~~~~~~~~~id~e~Le~~i~ 163 (1342)
.++.++. .+| |+|++.+..+.++.... +...| . ...++.++.+ |++++++.+.
T Consensus 148 ~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~--~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~ 220 (439)
T 2oat_A 148 TACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSA--ISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQ 220 (439)
T ss_dssp HHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHH--HTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHTT
T ss_pred HHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhH--hhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHhC
Confidence 9998864 367 89998776554432211 11212 0 0123334443 8999999885
Q ss_pred hcCCeEEEEcCCCCC-c-cc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC
Q psy13354 164 KNKPKLIIAGASAYS-Q-YI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP 234 (1342)
Q Consensus 164 ~~~~~liv~~~s~~~-~-~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp 234 (1342)
..+++++++.+.+++ + .. ++++|.++|++||++||+||+|. |+...+... .... .+|++ |+||+++++
T Consensus 221 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G 297 (439)
T 2oat_A 221 DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-GLARTGRWLAVDYENVRPDIV--LLGKALSGG 297 (439)
T ss_dssp STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTT
T ss_pred CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCccCCcchhHHHhCCCCcEE--EecccccCC
Confidence 335567776553322 2 22 79999999999999999999994 432222211 1111 25776 778999653
Q ss_pred --CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee-CCC
Q psy13354 235 --RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS-GGT 311 (1342)
Q Consensus 235 --~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~~ 311 (1342)
.+|++++++++++.+........+++ ++..++++.+..+.+.+ +.+.+++.++++++.+.|++.++++.. .+.
T Consensus 298 ~~~~G~v~~~~~~~~~l~~~~~~~t~~~--~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~ 373 (439)
T 2oat_A 298 LYPVSAVLCDDDIMLTIKPGEHGSTYGG--NPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMKLPSDVVTAVRG 373 (439)
T ss_dssp SSCCEEEEECHHHHTTSCTTSSCCSSTT--CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTTSCTTTEEEEEE
T ss_pred CCCeEEEEECHHHHhccCCCCcccCCCc--CHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 46999999988877765333444433 33434444444444322 245788899999999999886543211 112
Q ss_pred CCeEEEEEccCC--CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 312 KSHIILVDLRNK--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 312 ~~~~v~i~~~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+.++++.++.. ....++...+++ +||.+.+. + .+.+|++++..++
T Consensus 374 ~g~~~~v~l~~~~~~~~~~l~~~l~~-~Gv~v~~~-------~---~~~iRi~~~~~~t 421 (439)
T 2oat_A 374 KGLLNAIVIKETKDWDAWKVCLRLRD-NGLLAKPT-------H---GDIIRFAPPLVIK 421 (439)
T ss_dssp ETTEEEEEECCCSSCCHHHHHHHHHH-TTEECCBS-------S---SSEEEECCCTTCC
T ss_pred eeeEEEEEEecCccHHHHHHHHHHHH-CCeEEecC-------C---CCEEEEECccCCC
Confidence 456788888654 224456666665 59999852 1 3569998876544
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-16 Score=195.23 Aligned_cols=280 Identities=16% Similarity=0.094 Sum_probs=179.7
Q ss_pred HHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEecCCC---CCC
Q psy13354 77 IAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLNK---KEK 152 (1342)
Q Consensus 77 ~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~~---~~~ 152 (1342)
++++.+++++|.+.++++++|+++|+.+++.++++|||+|++.... |.+.... +...|..+..++...++ .+.
T Consensus 177 e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~---H~S~~~~~~~l~Ga~~v~v~~~~~~~~i~g~ 253 (730)
T 1c4k_A 177 AAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNN---HKSVYNSALAMAGGRPVYLQTNRNPYGFIGG 253 (730)
T ss_dssp HHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTC---CHHHHHHHTTTTCCEEEEECEEECTTCCEEE
T ss_pred HHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCc---hHHHHHHHHHHCCCEEEEEeCCccccCccCC
Confidence 3455999999999887777444589999999999999999977644 4444444 56667744444332221 134
Q ss_pred CCHHHH-----HHHHHhc------C--C-eEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC--CC
Q psy13354 153 IDYKKV-----EYLAKKN------K--P-KLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY--PN 215 (1342)
Q Consensus 153 id~e~L-----e~~i~~~------~--~-~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~--~~ 215 (1342)
+|++++ ++++++. + + ++++++++++. ...++++|+++|++||++|++|+||+.+....... ..
T Consensus 254 id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~ 333 (730)
T 1c4k_A 254 IYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSS 333 (730)
T ss_dssp ECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGC
T ss_pred CCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccCCcC
Confidence 677777 8888754 2 2 66666666654 44599999999999999999999997543211100 01
Q ss_pred CCC----CCc----EEEecCCccCCCCCe-eEEEEechhH---------HHHhhccCCccccCCcHHHHHHHHHHHHHhc
Q psy13354 216 PVP----FAD----FITSTTHKSLRGPRG-GFILMKKKYK---------KIINSAVFPGIQGGPLMHVIAAKAVAFKEVL 277 (1342)
Q Consensus 216 ~l~----~~D----ivv~S~sK~l~gp~G-G~iv~~~~l~---------~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l 277 (1342)
++. .+| ++++|+||+++|+.+ |+++.+++.+ ..+......+..++++.+..+++.++.....
T Consensus 334 ~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaal~aA~~~l~ 413 (730)
T 1c4k_A 334 PLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQE 413 (730)
T ss_dssp TTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 121 246 999999999977765 7776665432 2222211122234555555666555554433
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHh--CCcEEeeCCC------------------------------------CC-e-E--
Q psy13354 278 KPDFKIYQKQVVKNAKILSKILDQ--RGIRIVSGGT------------------------------------KS-H-I-- 315 (1342)
Q Consensus 278 ~~~~~~~~~~l~~~a~~l~~~L~~--~g~~~~~~~~------------------------------------~~-~-~-- 315 (1342)
.+...+..+++.++++++++.|.+ .|+++..+.. .+ + +
T Consensus 414 ~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp 493 (730)
T 1c4k_A 414 GEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDP 493 (730)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhccccccCCcccccCC
Confidence 224566778899999999999988 5787754211 11 1 1
Q ss_pred --EEEEcc----------CCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 316 --ILVDLR----------NKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 316 --v~i~~~----------~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+.+.++ +.+.+...+...|.++||.+... ...++|++++..++.
T Consensus 494 ~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~----------~~~~ir~~~s~g~t~ 549 (730)
T 1c4k_A 494 NKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS----------DLNSILFLMTPAETP 549 (730)
T ss_dssp TEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE----------CSSEEEEECCTTCCH
T ss_pred eEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC----------CCCeEEEEeCCCCCH
Confidence 455553 22345566666666669988643 134689988887764
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=183.31 Aligned_cols=246 Identities=16% Similarity=0.144 Sum_probs=165.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~ 146 (1342)
++...++++ ++++++|.+.+++++ ||++|+..++.++++|||+|++....|++...... .+...|. +++.++
T Consensus 81 ~p~~~~le~----~lA~l~g~~~~v~~~-sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~--~~~~v~ 153 (430)
T 3ri6_A 81 NPTVEDLEQ----RLKNLTGALGVLALG-SGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGI--EVRFVD 153 (430)
T ss_dssp CHHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTC--EEEEEC
T ss_pred CHHHHHHHH----HHHHHHCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC--EEEEeC
Confidence 444445555 899999998877777 99999999999999999999988877765544332 4456676 455556
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++++++++++ ++++|+++.+++| ...|+++|+++|+++|++||+|++|+.+.+ ..+.. .+|++
T Consensus 154 ~~-----d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-----~~~~~~g~div 222 (430)
T 3ri6_A 154 VM-----DSLAVEHACDE-TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-----LEAKRLGVDIE 222 (430)
T ss_dssp TT-----CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-----CCGGGGTCSEE
T ss_pred CC-----CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----CChHHcCCEEE
Confidence 55 89999998876 4567777666665 555999999999999999999999986654 22233 37999
Q ss_pred EecCCccCCCC---CeeEEEEec--hh------------------HHHHhhccCCccccCCcHHHHHHHHHHHHHhccch
Q psy13354 224 TSTTHKSLRGP---RGGFILMKK--KY------------------KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPD 280 (1342)
Q Consensus 224 v~S~sK~l~gp---~GG~iv~~~--~l------------------~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~ 280 (1342)
++|+||+++|+ .||+++.+. .+ +..++.. .....++...+..+++..... +.
T Consensus 223 ~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~-~~~~~g~~~~~~~a~l~l~~l----~~ 297 (430)
T 3ri6_A 223 VLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKE-VFQNLGPSLSPHNAYLQSLGL----ET 297 (430)
T ss_dssp EEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHT-HHHHHCCCCCHHHHHHHHHHH----HH
T ss_pred EECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHH-HHHhcCCCCCHHHHHHHHhhh----hh
Confidence 99999999654 458888443 22 1222211 111233333444443332222 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC----------------CCeEEEEEccCCCCCHHHHHHHHHHCCce
Q psy13354 281 FKIYQKQVVKNAKILSKILDQR-GIRIVSGGT----------------KSHIILVDLRNKKITGKIAESILESANII 340 (1342)
Q Consensus 281 ~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~----------------~~~~v~i~~~~~~~~~~~~~~ll~~~GI~ 340 (1342)
+..+.++..+++.++.+.|.+. ++..+..|. +++++|+.++. .+.+.++++...+.
T Consensus 298 l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~----~~~~~~~~~~l~~~ 370 (430)
T 3ri6_A 298 MALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES----KEASYRFMDALKLI 370 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS----HHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC----HHHHHHHHHhCCcc
Confidence 4556778899999999999885 455333222 22389999872 35566667665443
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=183.13 Aligned_cols=295 Identities=12% Similarity=0.071 Sum_probs=182.0
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc--CCCC
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL--NPGD 114 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~--~pGD 114 (1342)
+.++.+.+++.+.+.. +. ... ..| .. +..+++++.+++++|.+ +.+++++||++|+..++.++. .+||
T Consensus 61 ~~~~~v~~a~~~~~~~-~~--~~~-~~~-~~----~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~ 131 (395)
T 1vef_A 61 HGNPEVVEAVKRQAET-LM--AMP-QTL-PT----PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRK 131 (395)
T ss_dssp BTCHHHHHHHHHHHHH-CC--CCC-TTS-CC----HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHh-CC--CCc-ccc-CC----HHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCC
Confidence 3567799999888853 22 111 122 22 34455666899998654 445555599999999998764 6789
Q ss_pred EEEEeeccCCccchhhHHhhhCCcee----------EEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c-ccC
Q psy13354 115 TIMGMSLQEGGHLTHGMMLNMSGKWF----------NSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q-YID 182 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~~~~~~g~~~----------~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~-~~~ 182 (1342)
+|++++..+++.... .....|... ....++. .|++++++.+++ +++++++++++++ + ..+
T Consensus 132 ~vi~~~~~y~~~~~~--~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~ 203 (395)
T 1vef_A 132 KFVAAMRGFSGRTMG--SLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDE-ETAAVILEPVQGEGGVRPA 203 (395)
T ss_dssp EEEEETTCCCCSSHH--HHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCT-TEEEEEECSEETTTTSEEC
T ss_pred eEEEEcCCcCCCchh--hhhhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhcc-CEEEEEEeCccCCCCccCC
Confidence 998877655433221 122223210 1222222 389999998874 4677777654443 3 346
Q ss_pred ----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC
Q psy13354 183 ----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 183 ----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~ 254 (1342)
+++|+++|++||++||+|++|+ +....+.... ... .+|++ |+||+++++.+ |++++++++++.+.....
T Consensus 204 ~~~~l~~i~~l~~~~~~~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~ 280 (395)
T 1vef_A 204 TPEFLRAAREITQEKGALLILDEIQT-GMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMREEVARSMPKGGH 280 (395)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTSS
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeccc-CCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehHHHHhhhccCCc
Confidence 9999999999999999999998 3221121110 111 25766 67999955433 999999887776654222
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEe-eCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV-SGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~-~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
...+ +++...++++..++. ... . ....+++.++++++.+.|.+.+.++. ..+..++++|+.++.. ..++...+
T Consensus 281 ~~~~-~~~~~~~~a~~~al~-~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--~~~l~~~l 354 (395)
T 1vef_A 281 GTTF-GGNPLAMAAGVAAIR-YLE-R-TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEK--AAPYIARL 354 (395)
T ss_dssp CCSS-TTCHHHHHHHHHHHH-HHH-H-HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSC--SHHHHHHH
T ss_pred CCCc-CCCHHHHHHHHHHHH-HHH-h-CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEEEEEEcCh--HHHHHHHH
Confidence 2222 233334444443433 322 1 34577888999999999988754211 1123457888888653 56777777
Q ss_pred HHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++++||.+.+. + .+++|++++..++
T Consensus 355 ~~~~gi~v~~~-------~---~~~iRi~~~~~~~ 379 (395)
T 1vef_A 355 EKEHRVLALQA-------G---PTVIRFLPPLVIE 379 (395)
T ss_dssp HHHHCEECEES-------S---TTEEEECCCTTCC
T ss_pred HHHCCeEEecC-------C---CCEEEEeCCCCCC
Confidence 73559999863 1 3579998876544
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-16 Score=186.01 Aligned_cols=208 Identities=15% Similarity=0.157 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCC
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKI 153 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~i 153 (1342)
.+.+++.+++++|.+++++++ ||++|+..++.+++.+||+|++....|++..... ......|. ++..++.+
T Consensus 68 ~~~l~~~la~~~g~~~~~~~~-sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~--~~~~v~~~----- 139 (392)
T 3qhx_A 68 RTALEAALAAVEDAAFGRAFS-SGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNV--EYTPVALA----- 139 (392)
T ss_dssp HHHHHHHHHHHTTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTC--EEEEECTT-----
T ss_pred HHHHHHHHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCc--EEEEeCCC-----
Confidence 344555999999998766666 9999999999999999999998887776543333 22345566 45555654
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCcc
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKS 230 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~ 230 (1342)
|++++++++++ ++++|++.+++++ ...++++|+++|++||+++|+|++|+.+.. ..+.. .+|+++.|+||+
T Consensus 140 d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-----~~~~~~~~di~~~S~sK~ 213 (392)
T 3qhx_A 140 DLDAVRAAIRP-TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-----QQPLSLGADVVLHSTTKY 213 (392)
T ss_dssp CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-----CCGGGGTCSEEEEETTTT
T ss_pred CHHHHHHhhCC-CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-----CChHHhCCcEEEEcCccc
Confidence 89999999876 4566666666655 445999999999999999999999975532 11222 369999999999
Q ss_pred CCCCC---eeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 231 LRGPR---GGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 231 l~gp~---GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
++++. ||++++++ ++.+.+......+ +....+..+++.....+ .+....++..+++.++.+.|.+.
T Consensus 214 lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~l~----~l~~~~~~~~~~~~~l~~~L~~~ 283 (392)
T 3qhx_A 214 IGGHSDVVGGALVTNDEELDQSFAFLQNGA--GAVPGPFDAYLTMRGLK----TLVLRMQRHSENAAAVAEFLAEH 283 (392)
T ss_dssp TTCSSCCCCEEEEESCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCceEEEEEECcHHHHHHHHHHHHhc--CCCCCHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHhcC
Confidence 95543 59999984 7777766532222 22223333333333222 34456778888999999999875
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-15 Score=177.81 Aligned_cols=247 Identities=16% Similarity=0.207 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEecCCCCCCC
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLNKKEKI 153 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~~~~~i 153 (1342)
.+++++.+++++|.+++++++ +|++|+..++.+++.+||+|+++...|+++...... ....|. .+..++.+
T Consensus 67 ~~~l~~~la~~~g~~~~i~~~-sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~----- 138 (398)
T 1gc0_A 67 LNLLEARMASLEGGEAGLALA-SGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV--KLRHVDMA----- 138 (398)
T ss_dssp HHHHHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTC--EEEEECTT-----
T ss_pred HHHHHHHHHHHhCCCcEEEEC-CHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCC--EEEEECCC-----
Confidence 344555899999988776666 999999999999999999999888777665443322 245566 44544543
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCcc
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKS 230 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~ 230 (1342)
|++++++.+++ ++++|++++++++ ...++++|+++|++||+++|+|++|+.+.... ++. .+|+++.|+||+
T Consensus 139 d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~d~~~~S~sK~ 212 (398)
T 1gc0_A 139 DLQALEAAMTP-ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR-----PLELGADLVVHSATKY 212 (398)
T ss_dssp CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCC-----GGGGTCSEEEEETTTT
T ss_pred CHHHHHHhcCC-CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCC-----chhhCceEEEECCccc
Confidence 89999998875 5567777666665 45599999999999999999999998776522 122 369999999999
Q ss_pred CCCCC---eeEEEEechhHH-HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cE
Q psy13354 231 LRGPR---GGFILMKKKYKK-IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IR 305 (1342)
Q Consensus 231 l~gp~---GG~iv~~~~l~~-~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~ 305 (1342)
++++. ||+++++++.++ .+...... .+++..++..++++.+.. + .+....++..+++..+.+.|.+.+ +.
T Consensus 213 ~~~~~~~~~G~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l---~-~~~~~~~~~~~~~~~l~~~L~~~~~v~ 287 (398)
T 1gc0_A 213 LSGHGDITAGIVVGSQALVDRIRLQGLKD-MTGAVLSPHDAALLMRGI---K-TLNLRMDRHCANAQVLAEFLARQPQVE 287 (398)
T ss_dssp TTCSSSCCCEEEEECHHHHHHHHHTHHHH-HTCCCCCHHHHHHHHHHH---T-THHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred cCCCCCCeEEEEEEChHHHHHHHHHHhhc-cCCCCCCHHHHHHHHhcc---c-hHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence 96665 599999987655 45432221 022222333333322222 2 445567788888999999988743 21
Q ss_pred E--------------eeC--CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 306 I--------------VSG--GTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 306 ~--------------~~~--~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
. ... ...++++.+.++. ..+.+..++++.++.+..
T Consensus 288 ~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~l~~~~i~~~~ 338 (398)
T 1gc0_A 288 LIHYPGLASFPQYTLARQQMSQPGGMIAFELKG---GIGAGRRFMNALQLFSRA 338 (398)
T ss_dssp EEEEC----------------CCTTEEEEEETT---HHHHHHHHHHHCSSSEEC
T ss_pred EEECCCCCCCcCHHHHHhhCCCCceEEEEEECC---CHHHHHHHHHhCCCceec
Confidence 1 100 1235677777653 235677788888888765
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-15 Score=178.89 Aligned_cols=245 Identities=18% Similarity=0.184 Sum_probs=160.9
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCC
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKID 154 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id 154 (1342)
+++++++++++|.+++++++ ||++|+..++.+++.+||+|+++...|++....+. .+...|. +++.++. |
T Consensus 59 ~~l~~~la~~~g~~~~~~~~-~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~------~ 129 (412)
T 2cb1_A 59 KALEERLKALEGALEAVVLA-SGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGV--TVRYVDP------E 129 (412)
T ss_dssp HHHHHHHHHHHTCSEEEEES-SHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTC--EEEEECS------S
T ss_pred HHHHHHHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCC--EEEEECC------C
Confidence 33555899999988665555 99999999999999999999988876654333322 1344566 4454453 4
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccC
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSL 231 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l 231 (1342)
++++++.+++ ++++|++++++++ ...++++|+++|++||+++|+|++|+.+... ..+.. ..|++++|+||++
T Consensus 130 ~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~----~~~~~~~~di~~~S~~K~~ 204 (412)
T 2cb1_A 130 PEAVREALSA-KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGAL----CRPLAWGAHVVVESLTKWA 204 (412)
T ss_dssp HHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTS----CCGGGGTCSEEEEETTTTT
T ss_pred HHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccc----CCccccCCeEEEECCcccc
Confidence 8899988865 4566666665555 4459999999999999999999999876211 11222 3799999999999
Q ss_pred CCCCe--eEEE-Eec---------------------------hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchH
Q psy13354 232 RGPRG--GFIL-MKK---------------------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDF 281 (1342)
Q Consensus 232 ~gp~G--G~iv-~~~---------------------------~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~ 281 (1342)
+++.+ |+++ .++ ++.+.++... ....+....+..+++... . + +.+
T Consensus 205 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~-~~~~g~~~~~~~a~~~~~--~-l-~~l 279 (412)
T 2cb1_A 205 SGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLG-LSLCGMALSPFNAYLLFQ--G-L-ETV 279 (412)
T ss_dssp TCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHH-TTTTCCCCCHHHHHHHHH--H-G-GGH
T ss_pred cCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHH-HHhcCCCCChHHhHHHHc--C-C-chH
Confidence 66544 4444 552 2334444322 011122223333332222 2 2 244
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CcEEee-CC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCceeeec
Q psy13354 282 KIYQKQVVKNAKILSKILDQR-GIRIVS-GG---------------TKSHIILVDLRNKKITGKIAESILESANIICNKN 344 (1342)
Q Consensus 282 ~~~~~~l~~~a~~l~~~L~~~-g~~~~~-~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~ 344 (1342)
....++..++++++.+.|.+. ++..+. ++ ..+.++.+.+ + +.+.+..++++.||.+ ..
T Consensus 280 ~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~---~~~~~~~~l~~~~i~~-~~ 354 (412)
T 2cb1_A 280 ALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G---DLERASRFLGAIRLLK-AA 354 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S---SHHHHHHHHHHCSSEE-CS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C---CHHHHHHHHHhCCeee-ec
Confidence 556677788999999999885 666442 21 2345777877 3 4567788888889998 55
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-16 Score=185.94 Aligned_cols=250 Identities=16% Similarity=0.153 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCC
Q psy13354 73 LIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKE 151 (1342)
Q Consensus 73 ~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~ 151 (1342)
+..+++++++++++|.+++++++ +|++|+..++.+++.+||+|++....|+++..... .....|. +++.++.+
T Consensus 64 ~~~~~l~~~la~~~g~~~~i~~~-sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~--- 137 (398)
T 2rfv_A 64 PTTDALEKKLAVLERGEAGLATA-SGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI--NVRFVDAA--- 137 (398)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTC--EEEEECTT---
T ss_pred hHHHHHHHHHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCC--EEEEeCCC---
Confidence 34444566999999988666666 89999999999999999999988766655433321 1255566 45555554
Q ss_pred CCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCC
Q psy13354 152 KIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTH 228 (1342)
Q Consensus 152 ~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~s 228 (1342)
|++++++.+++ +++++++++++++ ...++++|+++|++||+++|+|++|+.+.+.. ++. .+|++++|+|
T Consensus 138 --d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-----~~~~~~di~~~s~s 209 (398)
T 2rfv_A 138 --KPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ-----PLQLGADIVVHSVT 209 (398)
T ss_dssp --SHHHHHHHCCT-TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-----GGGGTCSEEEEETT
T ss_pred --CHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-----chhhCCcEEEEeCc
Confidence 89999998875 4567777666666 44599999999999999999999998765521 222 3699999999
Q ss_pred ccCCCCC---eeEEEEechhHH-HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-
Q psy13354 229 KSLRGPR---GGFILMKKKYKK-IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG- 303 (1342)
Q Consensus 229 K~l~gp~---GG~iv~~~~l~~-~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g- 303 (1342)
|+++++. ||++++++++++ .+......+..++.+...+.++..++ + ......+++.+++..+.+.|.+.+
T Consensus 210 K~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~----~~~~~~~~~~~~~~~l~~~l~~~~~ 284 (398)
T 2rfv_A 210 KYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGV-K----TLGIRMERHCENALKIARFLEGHPS 284 (398)
T ss_dssp TTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHH-T----THHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhh-h----hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9996654 499999998776 55432221101223233333333333 2 233445667778888888887753
Q ss_pred cEEe-eC---------------CCCCeEEEEEccCCCCCHHHHHHHHHHC---Cceeeec
Q psy13354 304 IRIV-SG---------------GTKSHIILVDLRNKKITGKIAESILESA---NIICNKN 344 (1342)
Q Consensus 304 ~~~~-~~---------------~~~~~~v~i~~~~~~~~~~~~~~ll~~~---GI~v~~~ 344 (1342)
+.-+ .+ ...++++++.+++. .+....++++. |+.+.++
T Consensus 285 v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~l~~~~~~~~i~~~~G 341 (398)
T 2rfv_A 285 ITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG---LEAGRRMINSVELCLLAVSLG 341 (398)
T ss_dssp EEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH---HHHHHHHHTTCSSSEECSCCS
T ss_pred eeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCC---HHHHHHHHHhCCcceeccCCC
Confidence 1111 00 12466778887642 23455566554 5555443
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=184.18 Aligned_cols=295 Identities=17% Similarity=0.116 Sum_probs=175.4
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL-------- 110 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~-------- 110 (1342)
.+|.+.+++.+.+.. +. .... .+ .. +...++++.+++++|.+.+++ ++||++|+..++.++.
T Consensus 82 ~~p~v~~ai~~~~~~-~~--~~~~-~~-~~----~~~~~l~~~la~~~g~~~v~~-~~sGseA~~~al~~a~~~~~~~~g 151 (433)
T 1z7d_A 82 CHPNILNAMINQAKN-LT--ICSR-AF-FS----VPLGICERYLTNLLGYDKVLM-MNTGAEANETAYKLCRKWGYEVKK 151 (433)
T ss_dssp TCHHHHHHHHHHHTT-CS--CCCT-TS-EE----HHHHHHHHHHHHHHTCSEEEE-ESSHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHh-CC--CccC-Cc-CC----HHHHHHHHHHHhhcCCCeEEE-eCCHHHHHHHHHHHHHHHhhhccC
Confidence 457799998888742 21 1111 12 22 334445568888888765544 4499999999998753
Q ss_pred -CCC-CEEEEeeccCCccchhhHHhhhCC-------c---eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 111 -NPG-DTIMGMSLQEGGHLTHGMMLNMSG-------K---WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 111 -~pG-D~Vlv~~~~~~~~~s~~~~~~~~g-------~---~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
.+| |+|++.+..+.++.... +...| . ...+..++.+ |++++++++...++++|++.+.+++
T Consensus 152 ~~~gr~~vi~~~~~yhg~~~~~--~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~~~~~vi~ep~~~~ 224 (433)
T 1z7d_A 152 IPENMAKIVVCKNNFSGRTLGC--ISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKDPNVCAFIVEPIQGE 224 (433)
T ss_dssp CCTTCCEEEEETTC----------------------------CEEEECTT-----CHHHHHHHHTSTTEEEEEECSSBST
T ss_pred CCCCCCeEEEEeCCcCCcchhh--hcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCCCCEEEEEEECCCCC
Confidence 467 99998776554432211 11111 0 0123334443 8999999985345567776553322
Q ss_pred -c-----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC--CeeEEEEechhHH
Q psy13354 179 -Q-----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP--RGGFILMKKKYKK 247 (1342)
Q Consensus 179 -~-----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp--~GG~iv~~~~l~~ 247 (1342)
+ ..++++|.++|++||++||+||+|. |+...+... .... .+|++ |+||++++. .+|++++++++++
T Consensus 225 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G~v~~~~~~~~ 301 (433)
T 1z7d_A 225 AGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPISAVLANDDIML 301 (433)
T ss_dssp TTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEECHHHHT
T ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeEEEEECHHHHh
Confidence 2 2279999999999999999999996 422222211 1111 25776 677999543 4699999998887
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEee-CCCCCeEEEEEccCC-
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVS-GGTKSHIILVDLRNK- 323 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~-~~~~~~~v~i~~~~~- 323 (1342)
.+......+.++. ++..++++.+..+.+.+ +.+.+++.++++++.+.|.+. +++... .+..+.++++.++..
T Consensus 302 ~l~~~~~~~t~~~--~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~ 377 (433)
T 1z7d_A 302 VIKPGEHGSTYGG--NPLAASICVEALNVLIN--EKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL 377 (433)
T ss_dssp TCCTTCCCCTTTT--CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT
T ss_pred hhccccccccCCC--CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh
Confidence 7655333333433 33434444444444321 245678888899999988774 442111 112456788888754
Q ss_pred CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 324 KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
....++...+++ +||.+.+. + .+.+|++++..++
T Consensus 378 ~~~~~~~~~l~~-~Gv~v~~~-------~---~~~iRi~~~~~~t 411 (433)
T 1z7d_A 378 VNVLDICLKLKE-NGLITRDV-------H---DKTIRLTPPLCIT 411 (433)
T ss_dssp CCHHHHHHHHHH-TTEECCEE-------T---TTEEEECCCTTCC
T ss_pred hHHHHHHHHHHH-CCeEEecC-------C---CCEEEEECCcCCC
Confidence 234456666665 59999864 1 3469998876544
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-15 Score=177.14 Aligned_cols=245 Identities=17% Similarity=0.126 Sum_probs=167.1
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCC
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKID 154 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id 154 (1342)
..+++.+++++|.+++++++ ||++|+..++.+++.+||+|+++...|++...... .....|. +++.++.. |
T Consensus 62 ~~l~~~la~~~g~~~~i~~~-sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~--~~~~v~~~-----d 133 (389)
T 3acz_A 62 EQFEEMVCSIEGAAGSAAFG-SGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGI--EVDLIDTS-----D 133 (389)
T ss_dssp HHHHHHHHHHHTCSEEEEES-SHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTC--EEEEECTT-----C
T ss_pred HHHHHHHHHHhCCCeEEEeC-CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCC--EEEEECCC-----C
Confidence 33445899999998777766 89999999999999999999988877665433322 2455676 44444543 8
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccC
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSL 231 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l 231 (1342)
++++++.+++ ++++|++++++++ ...|+++|+++|++||+++|+|++|+.+... .+++ .+|++++|+||++
T Consensus 134 ~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~-----~~~~~~~di~~~S~sK~~ 207 (389)
T 3acz_A 134 VEKVKAAWKP-NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFL-----KPLELGADIALHSVSKYI 207 (389)
T ss_dssp HHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC-----CGGGTTCSEEEEETTTTT
T ss_pred HHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccc-----CccccCCeEEEECChhhc
Confidence 9999998875 4567776666665 4559999999999999999999999766431 1222 3799999999999
Q ss_pred CCCC---eeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEE
Q psy13354 232 RGPR---GGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRI 306 (1342)
Q Consensus 232 ~gp~---GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~ 306 (1342)
+++. ||++++++ ++++.+......+ ++..++..++++.... . .+....++..+++..+.+.|++.+ +.-
T Consensus 208 ~~~~~~~~G~v~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~l---~-~l~~r~~~~~~~~~~l~~~l~~~~~v~~ 281 (389)
T 3acz_A 208 NGHGDVIGGVSSAKTAEDIATIKFYRKDA--GSLMAPMDAFLCARGM---K-TLPIRMQIHMENGLKVAKFLEQHEKIVK 281 (389)
T ss_dssp TCSSCCCCEEEEESSHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHH---T-THHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred cCCCCceeEEEEECcHHHHHHHHHHHHhc--CCCCCHHHHHHHHcCc---c-HHHHHHHHHHHHHHHHHHHHHcCCCeeE
Confidence 6664 49999999 8888776543222 2222333333222222 2 344456777888888888888753 211
Q ss_pred e-eC---------------CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeec
Q psy13354 307 V-SG---------------GTKSHIILVDLRNKKITGKIAESILESANIICNKN 344 (1342)
Q Consensus 307 ~-~~---------------~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~ 344 (1342)
+ .+ ...+.++.+.+++ .+....++++.||.+...
T Consensus 282 ~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~----~~~~~~~l~~~~i~~~~~ 331 (389)
T 3acz_A 282 VNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS----FEAAKKLMEHLKVCTLAV 331 (389)
T ss_dssp EECTTSTTSTTHHHHHHHCSSCCSEEEEEESS----HHHHHHHHTTCSSSEEBS
T ss_pred EECCCCCCCccHHHHHhhCCCCCeEEEEEECC----HHHHHHHHHhCCCcEECc
Confidence 1 11 0124567777753 456777888889888763
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9.1e-16 Score=180.66 Aligned_cols=195 Identities=14% Similarity=0.166 Sum_probs=146.2
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHH-----------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCc
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALD-----------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGI 448 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~-----------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~ 448 (1342)
.+..++.+.+|++++|++.+++.|.+++. ....++++|||||||||||++|+++++.+++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~--------- 110 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS--------- 110 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC---------
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---------
Confidence 45567889999999999999999998873 1244567999999999999999999999863
Q ss_pred ccCCCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH---------
Q psy13354 449 TSQPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------- 513 (1342)
Q Consensus 449 ~~~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------- 513 (1342)
.++.++++. ......++.++..+.. ..+.||+|||+|.+..
T Consensus 111 --------------------~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~ 166 (355)
T 2qp9_X 111 --------------------TFFSVSSSDLVSKWMGESEKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEGESEA 166 (355)
T ss_dssp --------------------EEEEEEHHHHHSCC---CHHHHHHHHHHHHH----TSSEEEEEECGGGGTC------CTH
T ss_pred --------------------CEEEeeHHHHhhhhcchHHHHHHHHHHHHHH----cCCeEEEEechHhhcccCCCCcchH
Confidence 233333221 1122345555555432 3457999999998852
Q ss_pred --HHHHHHHHhhc---CCCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q psy13354 514 --HAFNAMLKTLE---EPPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587 (1342)
Q Consensus 514 --~~~~~Ll~~Le---~p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La 587 (1342)
...+.|+..++ .++..+++|++||.++.+.+++++|+ ..+.+++|+.++...++..++...+..+++..++.|+
T Consensus 167 ~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la 246 (355)
T 2qp9_X 167 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLG 246 (355)
T ss_dssp HHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence 24677777776 34567888999999999999999999 8899999999999999999999888888999999999
Q ss_pred HhcCC-cHHHHHHHHHHHHhh
Q psy13354 588 TGAQG-SMRDALSLTDQAINY 607 (1342)
Q Consensus 588 ~~~~g-~lr~a~~~L~kl~~~ 607 (1342)
+.+.| +.+++.++++.++..
T Consensus 247 ~~t~G~sg~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 247 AMTEGYSGSDIAVVVKDALMQ 267 (355)
T ss_dssp HHTTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHH
Confidence 99987 777888888776544
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9.6e-16 Score=187.92 Aligned_cols=308 Identities=18% Similarity=0.183 Sum_probs=177.6
Q ss_pred HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCC-----C--
Q psy13354 41 LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNP-----G-- 113 (1342)
Q Consensus 41 ~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~p-----G-- 113 (1342)
+.+.+++.+.+.. + ...|+..+...++++ ++++++|.+++++++ ||++|+..++.++..+ |
T Consensus 53 ~~v~~a~~~~l~~----~---~~~y~~~~~~~~l~~----~la~~~~~~~v~~t~-~gt~A~~~al~~~~~~~~~~~G~~ 120 (467)
T 2oqx_A 53 GAVTQSMQAAMMR----G---DEAYSGSRSYYALAE----SVKNIFGYQYTIPTH-QGRGAEQIYIPVLIKKREQEKGLD 120 (467)
T ss_dssp SCCCHHHHHHTTS----C---CCCSSSCHHHHHHHH----HHHHHHCCSEEEEEC---CCSHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcc----C---cceeccCchhHHHHH----HHHHHhCcCcEEEcC-CcHHHHHHHHHHHhccccccCCCC
Confidence 5677777666531 1 123455555556655 888888887665555 9999999999999888 8
Q ss_pred --CEEEEeeccCCccchhhHHhhhCCceeEEEE----ecCC----CCCCCCHHHHHHHHHh---cCCeEEEEcCCCCC--
Q psy13354 114 --DTIMGMSLQEGGHLTHGMMLNMSGKWFNSIC----YGLN----KKEKIDYKKVEYLAKK---NKPKLIIAGASAYS-- 178 (1342)
Q Consensus 114 --D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~----~~~~----~~~~id~e~Le~~i~~---~~~~liv~~~s~~~-- 178 (1342)
|+|++. ..|. .+........|....... ++.+ .++.+|++++++++++ .++++|++++++++
T Consensus 121 ~~d~Ii~~-~~h~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~g 197 (467)
T 2oqx_A 121 RSKMVAFS-NYFF--DTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAG 197 (467)
T ss_dssp TTTCEEEE-SSCC--HHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGG
T ss_pred ccceEEec-cccc--ccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCC
Confidence 997754 2221 111122223333211111 1122 3467899999999985 24555665555444
Q ss_pred c----ccCHHHHHHHHHHcCCEEEEEcccch-hhh--------hcCCCCCCC-----CCCcEEEecCCccCCCCCeeEEE
Q psy13354 179 Q----YIDFERFYHIAKNINSYFMVDMAHYA-GLI--------AAGEYPNPV-----PFADFITSTTHKSLRGPRGGFIL 240 (1342)
Q Consensus 179 ~----~~~l~~I~~la~~~gi~LIvDea~~~-g~~--------~~~~~~~~l-----~~~Divv~S~sK~l~gp~GG~iv 240 (1342)
+ ..++++|+++|++||++||+|++|.. +.+ ..+.....+ ..+|++++|+||+++.+.||+++
T Consensus 198 G~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~Gg~~~ 277 (467)
T 2oqx_A 198 GQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLC 277 (467)
T ss_dssp CBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEE
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCceEEE
Confidence 2 23689999999999999999988876 432 111111111 23688899999999555589999
Q ss_pred Eech-hHHHH---hhcc--CC--ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC
Q psy13354 241 MKKK-YKKII---NSAV--FP--GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK 312 (1342)
Q Consensus 241 ~~~~-l~~~l---~~~~--~~--~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~ 312 (1342)
++++ +++.+ +... .. ...++......+++...+.+... ++..++..++++++.+.|.+.|+++. +..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~ 352 (467)
T 2oqx_A 278 MKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN---LDWLAYRIAQVQYLVDGLEEIGVVCQ--QAG 352 (467)
T ss_dssp ECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCEE--EEC
T ss_pred ecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhh---HHHHHHHHHHHHHHHHHHHHCCCeee--cCC
Confidence 8877 44433 2211 11 11222222222222222222221 12345567888999999988887765 345
Q ss_pred CeEEEEEccC---CCC-----CHHHHHHHHHHCCceeeeccC--CCC-C--C--Ccccccccccccccc-cc
Q psy13354 313 SHIILVDLRN---KKI-----TGKIAESILESANIICNKNSI--PND-P--E--KPYFTSGIRLGSSAI-TT 368 (1342)
Q Consensus 313 ~~~v~i~~~~---~~~-----~~~~~~~ll~~~GI~v~~~~~--p~~-~--~--~~~~~~~lRi~~~~~-~t 368 (1342)
++++|+.++. ... ...+...++.++||.+.+... ++. + + .+...+.+|++++.. ++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t 424 (467)
T 2oqx_A 353 GHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYT 424 (467)
T ss_dssp SSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSC
T ss_pred ceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCC
Confidence 7788888752 111 123366664667999987431 110 0 0 001135799998875 44
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=99.66 E-value=8.8e-16 Score=178.66 Aligned_cols=192 Identities=14% Similarity=0.180 Sum_probs=150.0
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHH-----------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcc
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALD-----------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGIT 449 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~-----------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~ 449 (1342)
+..++.+..|++++|++.+++.|.+.+. .+..++++|||||||||||++|+++++.+++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~---------- 77 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS---------- 77 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC----------
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC----------
Confidence 4567888999999999999999999882 2345678999999999999999999999863
Q ss_pred cCCCCCCcchhhhccCCCccEEEEccCCC--c----CHHHHHHHHHHHhhcCccCCceEEEeccCccCCH----------
Q psy13354 450 SQPCGKCSVCVKIDNGCFMDYIEMDAAST--R----GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH---------- 513 (1342)
Q Consensus 450 ~~~c~~~~~~~~~~~~~~~d~~~i~~~~~--~----~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~---------- 513 (1342)
.++.++++.. . ....++.++..+.. ..+.||+|||+|.+..
T Consensus 78 -------------------~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~ 134 (322)
T 3eie_A 78 -------------------TFFSVSSSDLVSKWMGESEKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEGESEAS 134 (322)
T ss_dssp -------------------EEEEEEHHHHHTTTGGGHHHHHHHHHHHHHH----TSSEEEEEECGGGGSCC------CCT
T ss_pred -------------------CEEEEchHHHhhcccchHHHHHHHHHHHHHh----cCCeEEEechhhhhhccCCCCcchHH
Confidence 3444544311 1 11234555554433 3456999999998742
Q ss_pred -HHHHHHHHhhc---CCCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 514 -HAFNAMLKTLE---EPPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 514 -~~~~~Ll~~Le---~p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
...+.|+..++ .....+++|.+||.++.+.+++.+|+ ..+.++.|+.++..++++.+++..+..++++.++.|++
T Consensus 135 ~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~ 214 (322)
T 3eie_A 135 RRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGA 214 (322)
T ss_dssp HHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 23577777776 45567888999999999999999999 78999999999999999999999888899999999999
Q ss_pred hcCC-cHHHHHHHHHHHH
Q psy13354 589 GAQG-SMRDALSLTDQAI 605 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~ 605 (1342)
.+.| +.+++.+++..+.
T Consensus 215 ~t~g~sg~di~~l~~~a~ 232 (322)
T 3eie_A 215 MTEGYSGSDIAVVVKDAL 232 (322)
T ss_dssp TTTTCCHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHH
Confidence 9977 6777777666543
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-15 Score=177.92 Aligned_cols=307 Identities=14% Similarity=0.086 Sum_probs=178.1
Q ss_pred Cceeeeec--CCCC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIAS--ENYT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~--~n~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..|.+.++ .+++ +|.+.+++.+.+. .+..++ .. ... +...++++++++++|.+.+++ ++||++|+
T Consensus 37 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~--~~--~~~----~~~~~l~~~la~~~~~~~v~~-~~gg~ea~ 106 (395)
T 3nx3_A 37 KYLDFSSGIGVCALGYNHAKFNAKIKAQVD-KLLHTS--NL--YYN----ENIAAAAKNLAKASALERVFF-TNSGTESI 106 (395)
T ss_dssp EEEESSHHHHTCTTCBSCHHHHHHHHHHHT-TCSCCC--TT--SBC----HHHHHHHHHHHHHHTCSEEEE-ESSHHHHH
T ss_pred EEEECCCcHHhccCCCCCHHHHHHHHHHHH-hccccc--cc--cCC----HHHHHHHHHHHHhcCCCeEEE-eCCHHHHH
Confidence 44666665 3444 5779999888874 222111 11 112 444556668999998655555 44999999
Q ss_pred HHHHHHcc-------CCCCEEEEeeccCCccchhhHHhh--------hCCceeEEEEecCCCCCCCCHHHHHHHHHhcCC
Q psy13354 103 QAVFFSVL-------NPGDTIMGMSLQEGGHLTHGMMLN--------MSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKP 167 (1342)
Q Consensus 103 ~~al~al~-------~pGD~Vlv~~~~~~~~~s~~~~~~--------~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~ 167 (1342)
..++.++. .++|+|++.+..+.+......... ..........++.+ |++++++++++ ++
T Consensus 107 ~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~-~~ 180 (395)
T 3nx3_A 107 EGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVNE-KT 180 (395)
T ss_dssp HHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCT-TE
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhccC-Ce
Confidence 99998775 457999987766654432211110 00111133333443 79999988864 34
Q ss_pred eEEEEcC-CCCC-cccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eE
Q psy13354 168 KLIIAGA-SAYS-QYID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GF 238 (1342)
Q Consensus 168 ~liv~~~-s~~~-~~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~ 238 (1342)
+++++.+ ++++ ...+ +++|+++|++||++||+||+|. +|..+......... ..|++ ++||+++++.+ |+
T Consensus 181 ~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~G~~~G~ 258 (395)
T 3nx3_A 181 CAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM--TSAKALGCGLSVGA 258 (395)
T ss_dssp EEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGTTTSCCEE
T ss_pred EEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE--EecccccCCCceEE
Confidence 5555544 3333 2224 9999999999999999999986 32221100001111 14665 56699954222 99
Q ss_pred EEEechh-HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CC-cEEeeCCCC
Q psy13354 239 ILMKKKY-KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RG-IRIVSGGTK 312 (1342)
Q Consensus 239 iv~~~~l-~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g-~~~~~~~~~ 312 (1342)
+++++++ ++.+........++. +...++++.++ .+...+ ++..+++.++.+++++.|.+ .+ +.... ..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~aa~aa-l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~ 332 (395)
T 3nx3_A 259 FVINQKVASNSLEAGDHGSTYGG-NPLVCAGVNAV-FEIFKE--EKILENVNKLTPYLEQSLDELINEFDFCKKRK--GL 332 (395)
T ss_dssp EEECHHHHHHHSCTTCCSSCBSC-CHHHHHHHHHH-HHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EE
T ss_pred EEEchhhhhhhcCCcccCCCCCC-CHHHHHHHHHH-HHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--eE
Confidence 9999988 777765433333332 23333433333 333211 23345555666666666554 23 22222 34
Q ss_pred CeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 313 SHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 313 ~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++++++.++......++...+++ +||.+.+.. .+++|++++..++.
T Consensus 333 g~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~----------~~~iRi~~~~~~t~ 378 (395)
T 3nx3_A 333 GFMQGLSLDKSVKVAKVIQKCQE-NALLLISCG----------ENDLRFLPPLILQK 378 (395)
T ss_dssp TTEEEEEECTTSCHHHHHHHHHH-TTEECEEET----------TTEEEECCCTTCCH
T ss_pred EEEEEEEeCCcchHHHHHHHHHH-CCCEEecCC----------CCEEEEECCCCCCH
Confidence 56888888765444556666655 599998652 35799987776554
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-15 Score=177.97 Aligned_cols=241 Identities=11% Similarity=0.095 Sum_probs=162.4
Q ss_pred HHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCCH
Q psy13354 77 IAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKIDY 155 (1342)
Q Consensus 77 ~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id~ 155 (1342)
.+++.+++++|.+++++++ ||++|+..++.+++++||+|++....|++..... ..+...|+ .+..++.+ |+
T Consensus 86 ~le~~lA~l~g~~~~i~~s-sGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~--~v~~v~~~-----d~ 157 (415)
T 2fq6_A 86 SLQQAMCELEGGAGCVLFP-CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV--TTSWFDPL-----IG 157 (415)
T ss_dssp HHHHHHHHHHTCSEEEEES-SHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTC--EEEEECTT-----CG
T ss_pred HHHHHHHHHhCCCeEEEeC-CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCc--EEEEECCC-----CH
Confidence 3444899999988777776 9999999999999999999999887776554433 22345566 44444544 78
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCcc
Q psy13354 156 KKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKS 230 (1342)
Q Consensus 156 e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~ 230 (1342)
+++++++++ ++++|++..++|+ ...|+++|+++|++ +|+++|+|++|+.+... .++. .+|++++|+||+
T Consensus 158 ~~le~ai~~-~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~-----~p~~~g~Div~~S~sK~ 231 (415)
T 2fq6_A 158 ADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLF-----KALDFGIDVSIQAATKY 231 (415)
T ss_dssp GGGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSS-----CGGGGTCSEEEEETTTT
T ss_pred HHHHHhhcc-CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccC-----CccccCCeEEEEeCccc
Confidence 889888875 3567776666665 55599999999999 99999999999865321 1222 379999999999
Q ss_pred CCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEE
Q psy13354 231 LRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRI 306 (1342)
Q Consensus 231 l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~ 306 (1342)
++++. ||++++++++++.+...... .++...+..+++.....+ .+....++..+++..+.+.|.+.. +..
T Consensus 232 lg~~g~~~~G~l~~~~~~~~~l~~~~~~--~G~~~~~~~a~~~~~~l~----~l~~r~~~~~~n~~~l~~~L~~~~~v~~ 305 (415)
T 2fq6_A 232 LVGHSDAMIGTAVCNARCWEQLRENAYL--MGQMVDADTAYITSRGLR----TLGVRLRQHHESSLKVAEWLAEHPQVAR 305 (415)
T ss_dssp TTCSSSCCCEEEEECTTTHHHHHHHHHH--TTCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred cCCCCCceEEEEEeCHHHHHHHHHHHHh--cCCCCCHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHcCCCeeE
Confidence 95544 59999998887777653221 233333333332222122 344556777888999999998853 332
Q ss_pred e-eCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCC
Q psy13354 307 V-SGG---------------TKSHIILVDLRNKKITGKIAESILESAN 338 (1342)
Q Consensus 307 ~-~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~G 338 (1342)
+ .+. ..+.++++.+++.. +.+....+++..+
T Consensus 306 v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~-~~~~~~~~l~~l~ 352 (415)
T 2fq6_A 306 VNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL-NNEELANYLDNFS 352 (415)
T ss_dssp EECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC-CHHHHHHHHTTCS
T ss_pred EECCCCCCCccHHHHHhhCCCCceEEEEEECCCC-CHHHHHHHHHhCC
Confidence 2 111 13568888887421 1344566665544
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-15 Score=180.85 Aligned_cols=319 Identities=12% Similarity=0.025 Sum_probs=171.8
Q ss_pred Cceeeeec--CCCC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHH
Q psy13354 28 NNIELIAS--ENYT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~--~n~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A 101 (1342)
..|.+.++ .+++ +|.+.+++.+.+.. ... +.... ... +...+++++++++++.+ +.+++++||++|
T Consensus 30 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~-~~~~~--~~~----~~~~~l~~~la~~~~~~~~~v~~~~gg~ea 101 (430)
T 3i4j_A 30 RYLDGSSGALVANIGHGRAEVGERMAAQAAR-LPF-VHGSQ--FSS----DVLEEYAGRLARFVGLPTFRFWAVSGGSEA 101 (430)
T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHHH-CCC-CCTTT--CEE----HHHHHHHHHHHHHTTCTTCEEEEESSHHHH
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHh-ccc-ccccc--cCC----HHHHHHHHHHHHhCCCCCCEEEEeCcHHHH
Confidence 34555554 3443 67799999888753 221 11111 112 44555666899998764 456666699999
Q ss_pred HHHHHHHcc--------CCCCEEEEeeccCCccchhhHHhhhCCc------------eeEEEEecCCCC---CCCCHHHH
Q psy13354 102 NQAVFFSVL--------NPGDTIMGMSLQEGGHLTHGMMLNMSGK------------WFNSICYGLNKK---EKIDYKKV 158 (1342)
Q Consensus 102 ~~~al~al~--------~pGD~Vlv~~~~~~~~~s~~~~~~~~g~------------~~~~v~~~~~~~---~~id~e~L 158 (1342)
+..+++++. .++|.|++....+.++............ .+..+ +.++. +..|++++
T Consensus 102 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l 179 (430)
T 3i4j_A 102 TESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKL--PKPDPARNGAEDAEGL 179 (430)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEE--CCCCTTSCHHHHHTHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEc--CCCcccchhhHHHHHH
Confidence 999999886 4478999877665543322111110000 11222 22211 23466889
Q ss_pred HHHHHh---cCCeEEEEcCCCC-C--cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCC-C-CCcEEE
Q psy13354 159 EYLAKK---NKPKLIIAGASAY-S--QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPV-P-FADFIT 224 (1342)
Q Consensus 159 e~~i~~---~~~~liv~~~s~~-~--~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l-~-~~Divv 224 (1342)
++.+++ .+++++++.+.+. + ...+ +++|+++|++||++||+||+|..... .+... ... . ..|++
T Consensus 180 e~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~-~g~~~~~~~~~~~~~di~- 257 (430)
T 3i4j_A 180 RALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGR-CGSPLALSRWSGVTPDIA- 257 (430)
T ss_dssp HHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT-TSSSSGGGGTTTCCCSEE-
T ss_pred HHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc-ccchhhhhhhcCCCCcEE-
Confidence 988874 4456677655544 3 1223 99999999999999999999863211 11111 111 1 24666
Q ss_pred ecCCccCCCC--CeeEEEEechhHHHHhhc----cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 225 STTHKSLRGP--RGGFILMKKKYKKIINSA----VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 225 ~S~sK~l~gp--~GG~iv~~~~l~~~l~~~----~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
++||++++. .-|++++++++++.+... .....++ .+...++++.++ .+...+ +++.+++.++.+++++.
T Consensus 258 -t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~-~~~~~~aaa~aa-l~~~~~--~~~~~~~~~~~~~~~~~ 332 (430)
T 3i4j_A 258 -VLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYA-GHPVSVAAGLSV-LDIVER--EDLTGAAKERGAQLLAG 332 (430)
T ss_dssp -EECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTT-TCHHHHHHHHHH-HHHHHH--TTHHHHHHHHHHHHHHH
T ss_pred -EEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCC-CCHHHHHHHHHH-HHHHHc--ccHHHHHHHHHHHHHHH
Confidence 467999431 129999999999988763 2222222 223344443333 333221 23455566666666666
Q ss_pred HHhC-----CcEEeeCCCCCeEEEEEccCCC---------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 299 LDQR-----GIRIVSGGTKSHIILVDLRNKK---------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 299 L~~~-----g~~~~~~~~~~~~v~i~~~~~~---------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
|.+. ++.... ..+.++++.+.+.. ...++...++ ++||.+.+...+..+.. .+++|++++
T Consensus 333 l~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~---~~~iRi~~~ 406 (430)
T 3i4j_A 333 LQALQARFPQMMQVR--GTGLLLGVVLGDLATGQAFETPGIASRIGAAAL-KRGLITYPGSGAEPNGR---GDHLLLGPP 406 (430)
T ss_dssp HHHHHHHCTTEEEEE--EETTEEEEEEC------------CHHHHHHHHH-HTTEECC--------------CEEEECCC
T ss_pred HHHHHHhCCCeEEEE--EEEEEEEEEeccccccCCCccHHHHHHHHHHHH-hCCCEEEecccccCCCC---CCEEEEECC
Confidence 6542 233322 23557777765321 1135666666 45999987643332221 457999887
Q ss_pred ccccc
Q psy13354 365 AITTR 369 (1342)
Q Consensus 365 ~~~t~ 369 (1342)
...+.
T Consensus 407 ~~~t~ 411 (430)
T 3i4j_A 407 LSITA 411 (430)
T ss_dssp TTCCH
T ss_pred CCCCH
Confidence 65553
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-15 Score=179.06 Aligned_cols=306 Identities=14% Similarity=0.069 Sum_probs=181.3
Q ss_pred ceeeeecC--CCC----cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHH
Q psy13354 29 NIELIASE--NYT----SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQ 100 (1342)
Q Consensus 29 ~i~l~a~~--n~l----~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~ 100 (1342)
.+.+.++. +++ +|.+.+++.+.+.. +. .+.... |. . +...++++.+++++|.+ +.+++++||++
T Consensus 44 ~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~-~~-~~~~~~-~~-~----~~~~~l~~~la~~~~~~~~~~v~~~~gg~e 115 (419)
T 2eo5_A 44 YLDFTSGIGVNNLGWPSHPEVIKIGIEQMQK-LA-HAAAND-FY-N----IPQLELAKKLVTYSPGNFQKKVFFSNSGTE 115 (419)
T ss_dssp EEESSGGGGTTTTCBSCCHHHHHHHHHHHTT-SC-CCSCSC-SC-C----HHHHHHHHHHHHHSSCSSCEEEEEESSHHH
T ss_pred EEEccCChhhhccCCCCCHHHHHHHHHHHhh-Cc-cccccc-cC-C----HHHHHHHHHHHHhCCCCcCCEEEEeCchHH
Confidence 45565554 344 67899999888742 21 111111 11 1 33444566899999874 46666669999
Q ss_pred HHHHHHHHccC-CCCEEEEeeccCCccchhhHHh------hh-----CCceeEEEEecCCCCCC----------------
Q psy13354 101 ANQAVFFSVLN-PGDTIMGMSLQEGGHLTHGMML------NM-----SGKWFNSICYGLNKKEK---------------- 152 (1342)
Q Consensus 101 A~~~al~al~~-pGD~Vlv~~~~~~~~~s~~~~~------~~-----~g~~~~~v~~~~~~~~~---------------- 152 (1342)
|+..++.++.. +||+|+++...+++........ .. ...++..+ +.++++.
T Consensus 116 a~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~g~~~~~~~~~~~~ 193 (419)
T 2eo5_A 116 AIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHV--PYPNPYRNPWHINGYENPSELVN 193 (419)
T ss_dssp HHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEE--CCCCSSSCTTCCCTTTCHHHHHH
T ss_pred HHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEE--CCCccccccccccccccchhhHH
Confidence 99999987643 4999998876665433222111 00 11223344 4443332
Q ss_pred CCHHHHH-HHHHh----cCCeEEEEcCCCCC-c-ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCCCCC-C
Q psy13354 153 IDYKKVE-YLAKK----NKPKLIIAGASAYS-Q-YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPNPVP-F 219 (1342)
Q Consensus 153 id~e~Le-~~i~~----~~~~liv~~~s~~~-~-~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~~l~-~ 219 (1342)
+|+++++ +.+++ .+.+++++++.+++ + ..+ +++|+++|++||++||+||+|. +|..+......... .
T Consensus 194 ~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~ 273 (419)
T 2eo5_A 194 RVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTV 273 (419)
T ss_dssp HHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred HHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCC
Confidence 3688999 88874 34466666554443 3 344 9999999999999999999997 33221100001111 2
Q ss_pred CcEEEecCCccCCCC-Ce-eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q psy13354 220 ADFITSTTHKSLRGP-RG-GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297 (1342)
Q Consensus 220 ~Divv~S~sK~l~gp-~G-G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~ 297 (1342)
.|++ |+||+++++ .+ ||++++++++ .+ .......++ .+.+.++++.+++. ... +..+++.++++++.+
T Consensus 274 ~d~~--t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~~t~~-~n~~~~~aa~aal~-~~~----~~~~~~~~~~~~l~~ 343 (419)
T 2eo5_A 274 PDVI--TLAKALGGGIMPIGATIFRKDLD-FK-PGMHSNTFG-GNALACAIGSKVID-IVK----DLLPHVNEIGKIFAE 343 (419)
T ss_dssp CSEE--EECGGGGTTTSCCEEEEEEGGGC-CC-------CCC-CCHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHH
T ss_pred CCEE--EecccccCCccceEEEEEchHhh-cC-CcccCCCCC-CCHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHH
Confidence 4665 677999542 33 9999999876 55 212222222 23444444444443 322 267888999999999
Q ss_pred HHHhCCcEEeeCCCCCeEEEEEccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 298 ILDQRGIRIVSGGTKSHIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 298 ~L~~~g~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.|.+. +.... ..++++++.+.+. ..+. +...++ ++||.+.+.. .+++|++++..++.
T Consensus 344 ~L~~~-~~~~~--~~g~~~~i~~~~~~~~~~-~~~~l~-~~Gv~v~~~~----------~~~lRis~~~~~t~ 401 (419)
T 2eo5_A 344 ELQGL-ADDVR--GIGLAWGLEYNEKKVRDR-IIGESF-KRGLLLLPAG----------RSAIRVIPPLVISE 401 (419)
T ss_dssp HHTTS-SSEEE--EETTEEEEECSCHHHHHH-HHHHHH-HTTEECEEET----------TTEEEECCCTTCCH
T ss_pred HHHHh-hhheE--eeeEEEEEEEecCccHHH-HHHHHH-HCCCEEecCC----------CCEEEEECCCCCCH
Confidence 99876 32222 2356778887421 1233 555665 5699998752 24699987765553
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-15 Score=188.64 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=150.5
Q ss_pred HHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-C----C
Q psy13354 77 IAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-K----E 151 (1342)
Q Consensus 77 ~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~----~ 151 (1342)
.+++.+++++|.+.++++++|++.|+.+++.++++|||+|++... +|.+....+...|.. ++.++.+. + +
T Consensus 209 ~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~---~h~s~~~~~~~~G~~--~v~v~~~~~~~g~~g 283 (755)
T 2vyc_A 209 ESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRN---CHKSIEQGLMLTGAK--PVYMVPSRNRYGIIG 283 (755)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESS---CCHHHHHHHHHHCCE--EEEECCCBCTTSCBC
T ss_pred HHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCC---chHHHHHHHHHcCCE--EEEEeCCCCcccccc
Confidence 355689999999987777745567999999999999999997764 455554445666774 44444432 2 3
Q ss_pred CC-----CHHHHHHHHHhc-C--------CeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCC--CC
Q psy13354 152 KI-----DYKKVEYLAKKN-K--------PKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE--YP 214 (1342)
Q Consensus 152 ~i-----d~e~Le~~i~~~-~--------~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~--~~ 214 (1342)
.+ |++++++++++. . +++++++++++. ...++++|+++|++||++|++|+||+.+...... ..
T Consensus 284 ~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~ 363 (755)
T 2vyc_A 284 PIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADH 363 (755)
T ss_dssp CCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTS
T ss_pred ccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCCc
Confidence 35 999999999763 1 236666566654 4459999999999999999999999754322211 01
Q ss_pred CCCCC--CcE------EEecCCccCCCCCe-eEEEEech--hH--HHHhhccCCccccCCcHHHHHHHHHHHHHhccchH
Q psy13354 215 NPVPF--ADF------ITSTTHKSLRGPRG-GFILMKKK--YK--KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDF 281 (1342)
Q Consensus 215 ~~l~~--~Di------vv~S~sK~l~gp~G-G~iv~~~~--l~--~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~ 281 (1342)
.++.. +|+ +++|+||+++|+.+ |+++++++ .. ..+......+..++++.+..+++.++.......+.
T Consensus 364 ~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~aA~~~l~~~gg 443 (755)
T 2vyc_A 364 YAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSG 443 (755)
T ss_dssp SSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSTHHH
T ss_pred chhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhH
Confidence 12122 354 89999999988774 88877765 22 23332212223456667777777766665544335
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q psy13354 282 KIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 282 ~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
.+..++..++++++++.|.+.
T Consensus 444 ~~~~~~~~~~a~~~r~~L~~l 464 (755)
T 2vyc_A 444 LSLTQEVIDEAVDFRQAMARL 464 (755)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 677888899999999998774
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-15 Score=179.70 Aligned_cols=299 Identities=13% Similarity=0.070 Sum_probs=178.5
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh-C-CCCceEecCCHHHHHHHHHH---HccCCC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF-N-AEAANVQPHSGSQANQAVFF---SVLNPG 113 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~-g-~~~~vi~~~sGs~A~~~al~---al~~pG 113 (1342)
.+|.+.+++.+.+. .+. .... .+.......++++ .+++++ | .++.+++++||++|+..++. ++.++|
T Consensus 58 ~~~~v~~a~~~~~~-~~~--~~~~-~~~~~~~~~~l~~----~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~ 129 (426)
T 1sff_A 58 LHPKVVAAVEAQLK-KLS--HTCF-QVLAYEPYLELCE----IMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS 129 (426)
T ss_dssp TCHHHHHHHHHHTT-TCS--CCCT-TTEECHHHHHHHH----HHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHH-hCC--Cccc-cccCCHHHHHHHH----HHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC
Confidence 46779999888874 221 1111 1223344444444 788888 5 32456666699999999988 667776
Q ss_pred CEEEEeeccCCccchhhHHhhhCCc-------------eeEEEEecCC---CCCCCCHHHHHHHHHh----cCCeEEEEc
Q psy13354 114 DTIMGMSLQEGGHLTHGMMLNMSGK-------------WFNSICYGLN---KKEKIDYKKVEYLAKK----NKPKLIIAG 173 (1342)
Q Consensus 114 D~Vlv~~~~~~~~~s~~~~~~~~g~-------------~~~~v~~~~~---~~~~id~e~Le~~i~~----~~~~liv~~ 173 (1342)
+|++.+..+++....+ ....|. ++..++++.+ .++.+|++++++.+++ .++++|++.
T Consensus 130 -~vi~~~p~y~~~~~~~--~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 206 (426)
T 1sff_A 130 -GTIAFSGAYHGRTHYT--LALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIE 206 (426)
T ss_dssp -EEEEETTCCCCSSHHH--HHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEEC
T ss_pred -eEEEECCCcCCCchHh--hhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEe
Confidence 7887766655443221 112221 1334444321 1345789999998874 345667664
Q ss_pred C-CCCCc-ccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCCCe---eEEEE
Q psy13354 174 A-SAYSQ-YID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGPRG---GFILM 241 (1342)
Q Consensus 174 ~-s~~~~-~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp~G---G~iv~ 241 (1342)
+ +++++ ..+ +++|.++|++||++||+||+|+ ++...+... ...+ .+|++ |+||++ ++ | ||+++
T Consensus 207 p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~di~--s~sK~~-~~-GlriG~~~~ 281 (426)
T 1sff_A 207 PVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLT--TFAKSI-AG-GFPLAGVTG 281 (426)
T ss_dssp SBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEE--EECGGG-GT-SSCCEEEEE
T ss_pred cccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcccchhhhhhcCCCCCEE--EEcccc-cC-CCceEEEEE
Confidence 4 23344 556 9999999999999999999998 332222211 1111 24655 778999 55 6 99999
Q ss_pred echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--c---EEeeCCCCCeEE
Q psy13354 242 KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--I---RIVSGGTKSHII 316 (1342)
Q Consensus 242 ~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~---~~~~~~~~~~~v 316 (1342)
++++++.+........++ .+...++++.+++..... ..+.+++.++++++.+.|.+.+ + .... + .++++
T Consensus 282 ~~~~~~~l~~~~~~~~~~-~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~-~g~~~ 355 (426)
T 1sff_A 282 RAEVMDAVAPGGLGGTYA-GNPIACVAALEVLKVFEQ---ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVR-G-LGAMI 355 (426)
T ss_dssp EHHHHTTSCTTSBCCSSS-SCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEE-E-ETTEE
T ss_pred cHHHHhhhccCCcCcCCC-CCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-E-EEEEE
Confidence 998877665422222222 234444444444433222 1356778888888888887632 2 2212 2 36788
Q ss_pred EEEccCC--------CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 317 LVDLRNK--------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 317 ~i~~~~~--------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
|+.+... ....++...+++ +||.+.++..+ .+++|++++..++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~--------~~~iRi~~~~~~~ 406 (426)
T 1sff_A 356 AIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY--------YNVLRILVPLTIE 406 (426)
T ss_dssp EEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT--------SCEEEECCCTTCC
T ss_pred EEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCC--------CCEEEEECCccCC
Confidence 9888531 123355566655 59999876431 3569999875544
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=180.20 Aligned_cols=294 Identities=13% Similarity=0.074 Sum_probs=181.2
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC-------C
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN-------P 112 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~-------p 112 (1342)
+|.+.+++.+.+.. +. ... ..+ .. +...++++++++++|.+.+++++ ||++|+..++.++.. +
T Consensus 57 ~p~v~~a~~~~~~~-~~-~~~--~~~-~~----~~~~~l~~~la~~~~~~~v~~~~-gg~~a~~~al~~~~~~~~~~~~~ 126 (406)
T 4adb_A 57 HPELREALNEQASK-FW-HTG--NGY-TN----EPVLRLAKKLIDATFADRVFFCN-SGAEANEAALKLARKFAHDRYGS 126 (406)
T ss_dssp CHHHHHHHHHHHTT-CS-CCC--TTS-CC----HHHHHHHHHHHHHSSCSEEEEES-SHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHHHh-cc-ccc--CCc-CC----HHHHHHHHHHHhhCCCCeEEEeC-cHHHHHHHHHHHHHHHHHhcCCC
Confidence 67799998888753 21 111 112 22 23444566999999988555555 999999999998864 6
Q ss_pred C-CEEEEeeccCCccchhhHHhhhC--------CceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----
Q psy13354 113 G-DTIMGMSLQEGGHLTHGMMLNMS--------GKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS----- 178 (1342)
Q Consensus 113 G-D~Vlv~~~~~~~~~s~~~~~~~~--------g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~----- 178 (1342)
| |+|++.+..++++.......... ........++.+ |++++++.+++ ++++++++ |++|
T Consensus 127 g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~-~~~~v~~~-p~np~g~~~ 199 (406)
T 4adb_A 127 HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN-----DINSASALIDD-STCAVIVE-PIQGEGGVV 199 (406)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT-----CHHHHHTTCST-TEEEEEEC-SEETTTTSE
T ss_pred CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC-----cHHHHHHHhcC-CeEEEEEe-CCcCCCCCc
Confidence 6 89998777666553322211110 000123333333 89999988863 56778877 4555
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC-CeeEEEEechhHHHHhhc
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP-RGGFILMKKKYKKIINSA 252 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~~l~~~ 252 (1342)
...++++|+++|++||++||+||+|+ +....+.... ..+ ..|++ ++||+++++ .+|++++++++++.+...
T Consensus 200 ~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~--t~sK~~~~G~r~G~~~~~~~~~~~~~~~ 276 (406)
T 4adb_A 200 PASNAFLQGLRELCNRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDLL--TTAKALGGGFPVGALLATEECARVMTVG 276 (406)
T ss_dssp ECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECHHHHHTCCTT
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhHHHHhcCCCCCEE--EechhhcCCCCeEEEEEcHHHHhhhccC
Confidence 22379999999999999999999996 3221121110 011 24766 568999422 249999999988887664
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCc--EEee-CCCCCeEEEEEccCCC--CCH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI--RIVS-GGTKSHIILVDLRNKK--ITG 327 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~--~~~~-~~~~~~~v~i~~~~~~--~~~ 327 (1342)
.....++ .+...++++..++ +... . ++..+++.++++++.+.|.+.+. .... ....+.++++.++... ...
T Consensus 277 ~~~~~~~-~~~~~~~a~~~~l-~~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 352 (406)
T 4adb_A 277 THGTTYG-GNPLASAVAGKVL-ELIN-T-PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAK 352 (406)
T ss_dssp SSCCSST-TCHHHHHHHHHHH-HHHS-S-HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTTTCHH
T ss_pred CcCCCCC-CCHHHHHHHHHHH-HHHH-h-cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcHHHHH
Confidence 4333333 3344444444444 3333 2 56778889999999998887421 1111 1123567888876532 344
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++...++++ ||.+.+.. .+++|++++..++
T Consensus 353 ~~~~~l~~~-gi~v~~~~----------~~~iRi~~~~~~~ 382 (406)
T 4adb_A 353 QISQEAAKA-GVMVLIAG----------GNVVRFAPALNVS 382 (406)
T ss_dssp HHHHHHHHT-TEECEESS----------TTEEEECCCTTCC
T ss_pred HHHHHHHHC-CcEEeecC----------CCeEEEECCCCCC
Confidence 566666655 99998631 3569998776554
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-15 Score=172.05 Aligned_cols=212 Identities=22% Similarity=0.235 Sum_probs=158.4
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCc
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGI 448 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~ 448 (1342)
.+..++.|..|++++|++.+++.|.+.+.. +..++++||+||||||||++|+++++.+.+
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~--------- 80 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA--------- 80 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC---------
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC---------
Confidence 456788999999999999999999888743 234678999999999999999999998863
Q ss_pred ccCCCCCCcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC----------
Q psy13354 449 TSQPCGKCSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT---------- 512 (1342)
Q Consensus 449 ~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~---------- 512 (1342)
.++.++++.. .....++.++..+.. ..+.+|+|||++.+.
T Consensus 81 --------------------~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~ 136 (297)
T 3b9p_A 81 --------------------TFLNISAASLTSKYVGDGEKLVRALFAVARH----MQPSIIFIDEVDSLLSERSSSEHEA 136 (297)
T ss_dssp --------------------EEEEEESTTTSSSSCSCHHHHHHHHHHHHHH----TCSEEEEEETGGGTSBCC-----CC
T ss_pred --------------------CeEEeeHHHHhhcccchHHHHHHHHHHHHHH----cCCcEEEeccHHHhccccccCcchH
Confidence 2333333211 112345555554432 345799999999872
Q ss_pred -HHHHHHHHHhhcCCC-----CcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHH
Q psy13354 513 -HHAFNAMLKTLEEPP-----KYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNL 585 (1342)
Q Consensus 513 -~~~~~~Ll~~Le~p~-----~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~ 585 (1342)
....+.|+..++..+ ..+++|++||.++.+.+++.+|+ ..+.++.|+.++...++..++++.+..+++++++.
T Consensus 137 ~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~ 216 (297)
T 3b9p_A 137 SRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRR 216 (297)
T ss_dssp SHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 345667888877654 35788889999999999999999 78999999999999999999999888899999999
Q ss_pred HHHhcCCcHH-HHHHHHHHHHhhc----------------CCCCCHHHHHHHhccC
Q psy13354 586 IATGAQGSMR-DALSLTDQAINYS----------------SEKITLNSMQEMLSII 624 (1342)
Q Consensus 586 La~~~~g~lr-~a~~~L~kl~~~~----------------~~~It~e~V~~~v~~~ 624 (1342)
+++.+.|..+ ++.++++.+...+ ...|+.+|+..++...
T Consensus 217 la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 217 LAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHc
Confidence 9999988776 4445555543221 1247777777766543
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.64 E-value=6e-15 Score=177.20 Aligned_cols=247 Identities=16% Similarity=0.133 Sum_probs=163.4
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecC
Q psy13354 69 KFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGL 147 (1342)
Q Consensus 69 ~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~ 147 (1342)
+...++++ .+++++|.+++++++ +|++|+..++. ++++||+|+++...|++...... .+...|. +++.++.
T Consensus 67 p~~~~l~~----~la~~~g~~~~i~~~-sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~v~~ 138 (403)
T 3cog_A 67 PTRNCLEK----AVAALDGAKYCLAFA-SGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGL--KISFVDC 138 (403)
T ss_dssp HHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTC--EEEEECT
T ss_pred chHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCC--EEEEECC
Confidence 44445555 888899988777777 89999999999 89999999988877765433222 2345566 5555565
Q ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcC-CEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 148 NKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNIN-SYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 148 ~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~g-i~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
+ |++++++.+++ ++++|+++++++| ...++++|+++|+++| ++||+|++|+.+... .+++ .+|++
T Consensus 139 ~-----d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~-----~~~~~~~div 207 (403)
T 3cog_A 139 S-----KIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQ-----RPLALGADIS 207 (403)
T ss_dssp T-----SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTC-----CTTTTTCSEE
T ss_pred C-----CHHHHHHhcCc-CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccC-----CccccCCeEE
Confidence 4 89999998875 4567766666666 4459999999999999 999999999876532 1222 37999
Q ss_pred EecCCccCCCCCe---eEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|+||+++|+.| |+++++ +++++.+......+. ...++..+++..... . .+....++..+++..+.+.+
T Consensus 208 ~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g--~~~~~~~~~~~~~~l---~-~l~~r~~~~~~n~~~l~~~l 281 (403)
T 3cog_A 208 MYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLG--AVPSPIDCYLCNRGL---K-TLHVRMEKHFKNGMAVAQFL 281 (403)
T ss_dssp EEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHH---T-THHHHHHHHHHHHHHHHHHH
T ss_pred EEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcC--CCCCHHHHHHHHhhh---h-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999976654 999985 677777765433222 222333332222222 2 33445666777887787877
Q ss_pred HhCC---------------cEEeeC--CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 300 DQRG---------------IRIVSG--GTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 300 ~~~g---------------~~~~~~--~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
++.. +.+..+ ...+.++.+.+++. .+....++++.||.+..
T Consensus 282 ~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~l~~~~i~~~~ 339 (403)
T 3cog_A 282 ESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT---LQHAEIFLKNLKLFTLA 339 (403)
T ss_dssp HTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC---HHHHHHHHHHCSSSEEC
T ss_pred hcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC---HHHHHHHHHhCCcceEc
Confidence 6642 111110 01245566666542 35667778888987653
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=179.93 Aligned_cols=193 Identities=20% Similarity=0.229 Sum_probs=147.8
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGG 447 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~ 447 (1342)
..|..+++|..|++++|++.+++.|...+.. +..++++||+||+|||||++|+++++.+++
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-------- 174 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-------- 174 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC--------
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC--------
Confidence 3567889999999999999999999888732 234578999999999999999999998763
Q ss_pred cccCCCCCCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCC---------
Q psy13354 448 ITSQPCGKCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------- 512 (1342)
Q Consensus 448 ~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------- 512 (1342)
.++.++++... ....++.++..+... .+.||+|||+|.+.
T Consensus 175 ---------------------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~iDEid~l~~~~~~~~~~ 229 (389)
T 3vfd_A 175 ---------------------TFFNISAASLTSKYVGEGEKLVRALFAVAREL----QPSIIFIDQVDSLLCERREGEHD 229 (389)
T ss_dssp ---------------------EEEEECSCCC-------CHHHHHHHHHHHHHS----SSEEEEEETGGGGC--------C
T ss_pred ---------------------cEEEeeHHHhhccccchHHHHHHHHHHHHHhc----CCeEEEEECchhhcccCCCccch
Confidence 34555543321 123455555555432 34699999999882
Q ss_pred --HHHHHHHHHhhc----CCCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHH
Q psy13354 513 --HHAFNAMLKTLE----EPPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNL 585 (1342)
Q Consensus 513 --~~~~~~Ll~~Le----~p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~ 585 (1342)
...++.|+..++ .++..+++|.+||.++.+.+++.+|| ..+.+..++.++...++..++...+..++++.++.
T Consensus 230 ~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~ 309 (389)
T 3vfd_A 230 ASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQ 309 (389)
T ss_dssp THHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 334566776665 23567889999999999999999999 68999999999999999999999999999999999
Q ss_pred HHHhcCCcHHHHH-HHHHHH
Q psy13354 586 IATGAQGSMRDAL-SLTDQA 604 (1342)
Q Consensus 586 La~~~~g~lr~a~-~~L~kl 604 (1342)
|++.+.|..+..+ .++..+
T Consensus 310 la~~~~g~~~~~l~~L~~~a 329 (389)
T 3vfd_A 310 LARMTDGYSGSDLTALAKDA 329 (389)
T ss_dssp HHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHH
Confidence 9999998766444 444443
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-15 Score=175.31 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=151.5
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGG 447 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~ 447 (1342)
..+..++.|..|++++|++.+++.|.+.+.. +..++.+||+||+|||||++|+++++.+++
T Consensus 72 ~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-------- 143 (357)
T 3d8b_A 72 NEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-------- 143 (357)
T ss_dssp HHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC--------
T ss_pred hhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC--------
Confidence 3467789999999999999999999988752 355678999999999999999999998863
Q ss_pred cccCCCCCCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCC---------
Q psy13354 448 ITSQPCGKCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------- 512 (1342)
Q Consensus 448 ~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------- 512 (1342)
.++.++++... ....++.++..+.. ..+.+|+|||+|.+.
T Consensus 144 ---------------------~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~ 198 (357)
T 3d8b_A 144 ---------------------TFFSISASSLTSKWVGEGEKMVRALFAVARC----QQPAVIFIDEIDSLLSQRGDGEHE 198 (357)
T ss_dssp ---------------------EEEEEEGGGGCCSSTTHHHHHHHHHHHHHHH----TCSEEEEEETHHHHTBC------C
T ss_pred ---------------------eEEEEehHHhhccccchHHHHHHHHHHHHHh----cCCeEEEEeCchhhhccCCCCcch
Confidence 24444443211 12234455544432 345799999999772
Q ss_pred --HHHHHHHHHhhcC----CCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHH
Q psy13354 513 --HHAFNAMLKTLEE----PPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNL 585 (1342)
Q Consensus 513 --~~~~~~Ll~~Le~----p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~ 585 (1342)
...++.|+..++. ++..+++|++||.++.+.+++++|+ ..+.+..|+.++...++...++..+..+++++++.
T Consensus 199 ~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~ 278 (357)
T 3d8b_A 199 SSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQ 278 (357)
T ss_dssp HHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHH
Confidence 1345677777764 3467888999999999999999999 58899999999999999999999999999999999
Q ss_pred HHHhcCC-cHHHHHHHHHHHH
Q psy13354 586 IATGAQG-SMRDALSLTDQAI 605 (1342)
Q Consensus 586 La~~~~g-~lr~a~~~L~kl~ 605 (1342)
|++.+.| +.+++..+++.+.
T Consensus 279 la~~t~G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 279 IVQQSDAFSGADMTQLCREAS 299 (357)
T ss_dssp HHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHH
Confidence 9999988 6667777766654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-15 Score=179.26 Aligned_cols=312 Identities=13% Similarity=0.003 Sum_probs=183.8
Q ss_pred Cceeeeec--CCCC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHH
Q psy13354 28 NNIELIAS--ENYT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~--~n~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A 101 (1342)
+.|.+.++ .+++ +|.+.+|+.+.+.. .... . ...+ .. +...+++++++++++.. +.+++++||++|
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~-~~~~-~-~~~~-~~----~~~~~L~e~la~~~~~~~~~v~~~~sGseA 147 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRV-MNHV-M-FGGL-TH----EPAARLAKLLVDITPAGLDTVFFSDSGSVS 147 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHH-CSCC-C-SSSE-EC----HHHHHHHHHHHHHSSTTEEEEEEESSHHHH
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHh-ccCc-c-cccc-CC----HHHHHHHHHHHHhCCCCcCEEEEeCcHHHH
Confidence 44555554 2343 67799999888853 2111 1 0111 12 33445666899998654 455666699999
Q ss_pred HHHHHHHccC-------CCC-EEEEeeccCCccchhhHHh-----------hhCCceeEEEEecCCCCCCCCHHHHHHHH
Q psy13354 102 NQAVFFSVLN-------PGD-TIMGMSLQEGGHLTHGMML-----------NMSGKWFNSICYGLNKKEKIDYKKVEYLA 162 (1342)
Q Consensus 102 ~~~al~al~~-------pGD-~Vlv~~~~~~~~~s~~~~~-----------~~~g~~~~~v~~~~~~~~~id~e~Le~~i 162 (1342)
+..+++++.. +|+ .|++....+.++......+ .....++..++++.+.....|++++++++
T Consensus 148 ~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l 227 (457)
T 3tfu_A 148 VEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQL 227 (457)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHH
Confidence 9999998864 565 7777665554432221111 00111234444443322224789999988
Q ss_pred Hh--cCCeEEEEcC-CCCC-c-c----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCcc
Q psy13354 163 KK--NKPKLIIAGA-SAYS-Q-Y----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKS 230 (1342)
Q Consensus 163 ~~--~~~~liv~~~-s~~~-~-~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~ 230 (1342)
++ .++++|++.+ .+++ + . ..+++|.++|++||++||+||+|.. +...+.... ... ..|++ ++||+
T Consensus 228 ~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g-~gr~G~~~a~~~~~~~pdii--t~sK~ 304 (457)
T 3tfu_A 228 AQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATG-FGRTGALFAADHAGVSPDIM--CVGKA 304 (457)
T ss_dssp HHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTT-TTTTSSSSTHHHHTCCCSEE--EECGG
T ss_pred HhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccC-CccccchhHhHhcCCCceEE--EEChh
Confidence 74 3456677755 3333 1 2 2499999999999999999999862 111121111 011 25777 66799
Q ss_pred CCCC--CeeEEEEechhHHHHhhc-----cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-
Q psy13354 231 LRGP--RGGFILMKKKYKKIINSA-----VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR- 302 (1342)
Q Consensus 231 l~gp--~GG~iv~~~~l~~~l~~~-----~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~- 302 (1342)
++|. +.|++++++++++.+... .....++ .++..++++.+.++.+.+ +.+.+++.++.+++.+.|.+.
T Consensus 305 l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~--~n~~a~aaa~aaL~~~~~--~~~~~~~~~~~~~l~~~L~~l~ 380 (457)
T 3tfu_A 305 LTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFM--ANPLACAVSVASVELLLG--QDWRTRITELAAGLTAGLDTAR 380 (457)
T ss_dssp GGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTT--TCHHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHGGGG
T ss_pred hhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCC--cCHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHh
Confidence 9663 449999999999988522 1122222 234444444444444321 135677788888888888764
Q ss_pred ---CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 303 ---GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 303 ---g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++.... ..+.++++.++......++...++++ ||++.+. .+.+|++.+...+
T Consensus 381 ~~~~v~~vr--~~G~~~~i~l~~~~~~~~~~~~l~~~-Gv~v~~~-----------~~~lRi~p~~~~t 435 (457)
T 3tfu_A 381 ALPAVTDVR--VCGAIGVIECDRPVDLAVATPAALDR-GVWLRPF-----------RNLVYAMPPYICT 435 (457)
T ss_dssp GSTTEEEEE--ECSSCEEEEESSCCCHHHHHHHHHHT-TEECCCB-----------TTEEEECCCTTCC
T ss_pred cCCCeeeee--cCCeEEEEEECCcccHHHHHHHHHHC-CeEEEec-----------CCEEEEECCCCCC
Confidence 232222 23567788887654445666666665 9999752 2468988766544
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.5e-15 Score=171.48 Aligned_cols=203 Identities=19% Similarity=0.251 Sum_probs=154.8
Q ss_pred CCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
...+|+|+.|.+.+++.|++++.- -..+.++|||||||||||++|+++|+++++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~-------------- 208 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC-------------- 208 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC--------------
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC--------------
Confidence 446899999999999999888742 245678999999999999999999999974
Q ss_pred CCCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-------------- 513 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-------------- 513 (1342)
.|+.++++... +...+++++..+... .+-||+|||+|.+..
T Consensus 209 ---------------~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~----aP~IIFiDEiDai~~~R~~~~~~~~~~~~ 269 (405)
T 4b4t_J 209 ---------------KFIRVSGAELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSTRVEGSGGGDSEVQ 269 (405)
T ss_dssp ---------------EEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHT----CSEEEEEESSSCCTTSCSCSSSGGGGHHH
T ss_pred ---------------CceEEEhHHhhccccchHHHHHHHHHHHHHHh----CCceEeeecchhhccCCCCCCCCCcHHHH
Confidence 46666664321 234577777766543 345999999998731
Q ss_pred HHHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 514 HAFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 514 ~~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
...+.|+..++. ....+++|.+||.++.+++++++ |+ ..+.|+.|+.++..++++.++++..+. ++..++.||+
T Consensus 270 ~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~ 348 (405)
T 4b4t_J 270 RTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAE 348 (405)
T ss_dssp HHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHH
T ss_pred HHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHH
Confidence 135677777773 45678899999999999999997 77 789999999999999998888765543 2234888999
Q ss_pred hcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 589 GAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
.+.| +-.++.+++..+...+ ...||.+|+..++.
T Consensus 349 ~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~ 387 (405)
T 4b4t_J 349 KMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVG 387 (405)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 8865 7777777777766554 23488888877764
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-15 Score=177.73 Aligned_cols=206 Identities=17% Similarity=0.130 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCC
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKI 153 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~i 153 (1342)
.+.+++.+++++|.+++++++ +|++|+..++. ++++||+|+++...|++..... ..+...|..+.. ++.+
T Consensus 57 ~~~lr~~la~~~g~~~~i~~~-sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~--v~~~----- 127 (393)
T 1n8p_A 57 RENLERAVAALENAQYGLAFS-SGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSF--TNDL----- 127 (393)
T ss_dssp HHHHHHHHHHHTTCSEEEEES-CHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEE--ESSH-----
T ss_pred HHHHHHHHHHHhCCCcEEEEC-ChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEE--eCCC-----
Confidence 334555999999988777777 89999999999 8999999998886665433322 234555664444 4543
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHc----CCEEEEEcccchhhhhcCCCCCCCC-CCcEEEec
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNI----NSYFMVDMAHYAGLIAAGEYPNPVP-FADFITST 226 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~----gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S 226 (1342)
| +++++++++ ++++|++++++++ ...|+++|+++|++| |+++|+|++|+.+... .+.. .+|++++|
T Consensus 128 d-~~l~~~i~~-~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-----~~~~~~~di~~~S 200 (393)
T 1n8p_A 128 L-NDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-----NPLNFGADIVVHS 200 (393)
T ss_dssp H-HHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----CGGGGTCSEEEEE
T ss_pred h-HHHHHhccc-CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-----CHHHcCCeEEEEE
Confidence 6 888888765 4577777666665 445999999999999 9999999999877652 1222 37999999
Q ss_pred CCccCCCCCe----eEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Q psy13354 227 THKSLRGPRG----GFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ 301 (1342)
Q Consensus 227 ~sK~l~gp~G----G~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~ 301 (1342)
+||++ |+.| |+++++ +++++.+......+ +....+..+++.... +. .+....++..+++..+.+.|.+
T Consensus 201 ~sK~~-g~~G~rigG~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~---l~-~~~~~~~~~~~~~~~l~~~L~~ 273 (393)
T 1n8p_A 201 ATKYI-NGHSDVVLGVLATNNKPLYERLQFLQNAI--GAIPSPFDAWLTHRG---LK-TLHLRVRQAALSANKIAEFLAA 273 (393)
T ss_dssp TTTTT-TCSSCCCCEEEEESCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHH---HT-THHHHHHHHHHHHHHHHHHHTS
T ss_pred Ccccc-cCCCCceeEEEEeCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHhc---cc-hHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 5544 999985 67777776532221 222223333222221 22 3455667778888899999887
Q ss_pred CC
Q psy13354 302 RG 303 (1342)
Q Consensus 302 ~g 303 (1342)
.+
T Consensus 274 ~~ 275 (393)
T 1n8p_A 274 DK 275 (393)
T ss_dssp CT
T ss_pred CC
Confidence 64
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6e-15 Score=178.36 Aligned_cols=294 Identities=15% Similarity=0.105 Sum_probs=178.0
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC-------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN------- 111 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~------- 111 (1342)
.+|.+.+++.+.+. .+. .... .+ .. ++..++++++++++|.+.+++ ++||++|+..++.++..
T Consensus 74 ~~p~v~~ai~~~~~-~~~--~~~~-~~-~~----~~~~~l~~~la~~~g~~~v~~-~~ggteA~~~al~~~~~~~~~~~~ 143 (420)
T 2pb2_A 74 CHPALVEALKSQGE-TLW--HTSN-VF-TN----EPALRLGRKLIDATFAERVLF-MNSGTEANETAFKLARHYACVRHS 143 (420)
T ss_dssp TCHHHHHHHHHHHT-TCC--CCCT-TS-CC----HHHHHHHHHHHHHSSCSEEEE-ESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHH-hcc--cccC-cc-CC----HHHHHHHHHHHhhCCCCeEEE-eCCHHHHHHHHHHHHHHHhhhccC
Confidence 36779999888874 332 1111 12 12 345556668999988765544 44999999999998865
Q ss_pred CC-CEEEEeeccCCccchhhHHhhhCCce----------eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 112 PG-DTIMGMSLQEGGHLTHGMMLNMSGKW----------FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 112 pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~----------~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
+| ++|++.+..+.+..... ....|.. ..+..++.+ |++++++.+++ ++++|++++++++ +
T Consensus 144 ~g~~~vi~~~~~yh~~~~~~--~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~-~~~~vi~~p~~~~gG 215 (420)
T 2pb2_A 144 PFKTKIIAFHNAFHGRSLFT--VSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDD-HTCAVVVEPIQGEGG 215 (420)
T ss_dssp TTCCEEEEETTCCCCSSHHH--HHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCT-TEEEEEECSEETTTT
T ss_pred CCCCEEEEEeCCcCCcCHHH--HHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhcc-CceEEEEeCCcCCCC
Confidence 67 48888776655443221 1111211 113333433 89999998874 5677777665444 2
Q ss_pred -----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCCC-eeEEEEechhHHHHh
Q psy13354 180 -----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGPR-GGFILMKKKYKKIIN 250 (1342)
Q Consensus 180 -----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp~-GG~iv~~~~l~~~l~ 250 (1342)
..++++|.++|++||++||+||+|. |....+.... ... .+|++ |+||+++++. .|++++++++++.+.
T Consensus 216 ~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~-g~~~~g~~~~~~~~~~~~dii--t~sK~l~~G~~iG~~~~~~~l~~~l~ 292 (420)
T 2pb2_A 216 VQAATPEFLKGLRDLCDEHQALLVFDEVQC-GMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPVSAMLTTQEIASAFH 292 (420)
T ss_dssp SEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECHHHHTTCC
T ss_pred eecCCHHHHHHHHHHHHHcCCEEEEEcCCc-CcccCCcHHHHHhcCCCCCeE--EecccccCCCceEEEEEhHHHHHhhc
Confidence 2479999999999999999999995 4322222110 111 25776 5689995322 299999988776665
Q ss_pred hccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEee-CCCCCeEEEEEccCCC--C
Q psy13354 251 SAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVS-GGTKSHIILVDLRNKK--I 325 (1342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~-~~~~~~~v~i~~~~~~--~ 325 (1342)
.......++. ++..++++.+.++...+ +...+++.++++++.+.|.+. +++... ....+.++++.++... .
T Consensus 293 ~~~~~~t~~~--~~~~~aa~~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~ 368 (420)
T 2pb2_A 293 VGSHGSTYGG--NPLACAVAGAAFDIINT--PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGR 368 (420)
T ss_dssp ----CCEECC--CHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGTTC
T ss_pred CCCcCcccCc--CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCCchHH
Confidence 4222333332 23333344444444432 456788889999999988774 222111 1123567788876432 2
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
..++...+++ +||.+.+.. .+.+|++++...+
T Consensus 369 ~~~l~~~l~~-~Gi~v~~~~----------~~~iRl~~~~~~t 400 (420)
T 2pb2_A 369 ARDFLYAGAE-AGVMVLNAG----------ADVMRFAPSLVVE 400 (420)
T ss_dssp HHHHHHHHHH-TTEECEESS----------TTEEEECCCTTCC
T ss_pred HHHHHHHHHH-CCCEEEeCC----------CCEEEEECCCCCC
Confidence 4456666665 699998641 2469999765444
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.9e-15 Score=177.89 Aligned_cols=303 Identities=13% Similarity=0.082 Sum_probs=173.7
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc--cCCCC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV--LNPGD 114 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al--~~pGD 114 (1342)
.+|.+.+++.+.+.. +. .+. +.. +..++..+++++++++++.. +.+++++||++|+..++.++ ..+++
T Consensus 60 ~~p~v~~a~~~~~~~-~~-~~~---~~~---~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~ 131 (439)
T 3dxv_A 60 GHPAIVAAVSAAAAN-PA-GAT---ILS---ASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRS 131 (439)
T ss_dssp SCHHHHHHHHHHHHS-CS-CSC---SSS---SEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHh-cc-Ccc---ccc---cCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCC
Confidence 467799998888753 21 111 111 11245556667999998532 35566669999999999885 34667
Q ss_pred EEEEeeccCCccchhhHHhhhCCcee------------EEEEecCCCCCCC-----CHHHHHHHHH---hcCCeEEEEcC
Q psy13354 115 TIMGMSLQEGGHLTHGMMLNMSGKWF------------NSICYGLNKKEKI-----DYKKVEYLAK---KNKPKLIIAGA 174 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~~~~~~g~~~------------~~v~~~~~~~~~i-----d~e~Le~~i~---~~~~~liv~~~ 174 (1342)
.|++.+..+.+..... ....+... .+..++.+..+.. |++++++++. ..+++++++.+
T Consensus 132 ~vi~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p 209 (439)
T 3dxv_A 132 GVIAFAGAYHGCTVGS--MAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEP 209 (439)
T ss_dssp EEEEETTCCCCSSHHH--HCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECS
T ss_pred EEEEECCCCCCCcHHH--HhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEcc
Confidence 7777665554333222 11111100 1112233222222 6899999985 34556777766
Q ss_pred CCCC--cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC-CeeEEEEech
Q psy13354 175 SAYS--QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP-RGGFILMKKK 244 (1342)
Q Consensus 175 s~~~--~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~ 244 (1342)
++++ ...+ +++|+++|++||++||+||+|+ |+...+... .... ..|++ |+||++++. ..||++++++
T Consensus 210 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~riG~~~~~~~ 286 (439)
T 3dxv_A 210 IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV-GLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLPLSAVIAPAE 286 (439)
T ss_dssp SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-CTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSCCEEEEEEHH
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhcCCCCCEE--EEcchhcCCcceEEEEECHH
Confidence 4443 2334 9999999999999999999996 321112111 1111 24666 778999431 2299999998
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEEEEEc
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v~i~~ 320 (1342)
+++.+........+ . ++...+++.+..+...+ +.+.+++.++++++.+.|.+. +..... +..+.++++.+
T Consensus 287 ~~~~~~~~~~~~t~--~-~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~ 360 (439)
T 3dxv_A 287 ILDCASAFAMQTLH--G-NPISAAAGLAVLETIDR--DDLPAMAERKGRLLRDGLSELAKRHPLIGDI-RGRGLACGMEL 360 (439)
T ss_dssp HHTSCSSSSCCTTT--T-CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEE
T ss_pred HHhhhcCCCcCCCc--c-cHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEE
Confidence 88777654333333 2 33333333333333321 334566777777777777653 322111 12355677766
Q ss_pred c--------CCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 321 R--------NKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 321 ~--------~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
. ......++...++++ ||.+.+.... .+++|++++..++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~--------~~~iRi~~~~~~t~ 408 (439)
T 3dxv_A 361 VCDRQSREPARAETAKLIYRAYQL-GLVVYYVGMN--------GNVLEFTPPLTITE 408 (439)
T ss_dssp EEETTTTEECHHHHHHHHHHHHHH-TEECEEESTT--------SCEEEECCCTTCCH
T ss_pred ecCccccCCCHHHHHHHHHHHHHC-CcEEeecCCC--------CCEEEEECCCCCCH
Confidence 2 111234566667665 9999876211 35799988776554
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-15 Score=178.91 Aligned_cols=306 Identities=11% Similarity=0.028 Sum_probs=186.9
Q ss_pred cCceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchH-----HHHHHHHHHHHHHHhCC---C-CceEec
Q psy13354 27 NNNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFI-----DLIEKIAINRLKKIFNA---E-AANVQP 95 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~-----~~Le~~~~~~la~~~g~---~-~~vi~~ 95 (1342)
.+.+.+..+....+++ +.+++.+... .........|+...+. .++++++++++. ..|. + +.++++
T Consensus 22 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~---~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t 97 (391)
T 3bwn_A 22 DFVVNLDHGDPTAYEEYWRKMGDRCTVT---IRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVG 97 (391)
T ss_dssp TSCEECSSCCCGGGHHHHHHTGGGSCEE---ECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEE
T ss_pred CCeeEcCCCCCCCCCCHHHHHhHHHHhh---cCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEe
Confidence 3457777766544333 3333221110 0111122334444554 788886666655 2342 2 356666
Q ss_pred CCHHHHHHHHHHHccCCCC----EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEE
Q psy13354 96 HSGSQANQAVFFSVLNPGD----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLII 171 (1342)
Q Consensus 96 ~sGs~A~~~al~al~~pGD----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv 171 (1342)
+|+++|+..++.++++||| +|++..+.|+ .+...+...|..+..+++ +.++ ++ ..++++++
T Consensus 98 ~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~---~~~~~~~~~g~~~~~~~~--d~~~-l~---------~~~~k~v~ 162 (391)
T 3bwn_A 98 TGSTQLCQAAVHALSSLARSQPVSVVAAAPFYS---TYVEETTYVRSGMYKWEG--DAWG-FD---------KKGPYIEL 162 (391)
T ss_dssp EHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCT---HHHHHHHTTCBTTEEEEE--ESTT-CC---------CCSCEEEE
T ss_pred CChHHHHHHHHHHhcCCCCCCcceEEEcCCCch---hHHHHHHHcCCeEEEecC--CHHH-cC---------CCCCEEEE
Confidence 4778899999999999999 9997775554 445555667775555543 3222 12 13567776
Q ss_pred EcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe---eEEEE-echhHH
Q psy13354 172 AGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG---GFILM-KKKYKK 247 (1342)
Q Consensus 172 ~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G---G~iv~-~~~l~~ 247 (1342)
+++++||+-.-+.+|++.++.++++||+|++|..+.. .........+++++||||++ |++| ||+++ ++++++
T Consensus 163 l~~p~NPtG~~~~~l~~~~~~~~~~ii~De~y~~~~~---~~l~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~l~~ 238 (391)
T 3bwn_A 163 VTSPNNPDGTIRETVVNRPDDDEAKVIHDFAYYWPHY---TPITRRQDHDIMLFTFSKIT-GHAGSRIGWALVKDKEVAK 238 (391)
T ss_dssp EESSCTTTCCCCCCCC-----CCCEEEEECTTCSTTT---SCCCCCBCCSEEEEEHHHHH-SCGGGCEEEEEECCHHHHH
T ss_pred ECCCCCCCchhHHHHHHHhhcCCCEEEEeCCCCCCCC---CccccCCCCeEEEEechhhc-CCCccceEEEEecCHHHHH
Confidence 6777777222123454422223399999999973211 00111112579999999999 7777 99997 788888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhc---------cchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC--------
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVL---------KPDFKIYQKQVVKNAKILSKILDQR-GIRIVSG-------- 309 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l---------~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-------- 309 (1342)
.+..... ....+++.+.+.++..++.... ..+++..++.+.++++++.+.|.+. ++.+..+
T Consensus 239 ~l~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~ 317 (391)
T 3bwn_A 239 KMVEYII-VNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYF 317 (391)
T ss_dssp HHHHHHH-HHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTT
T ss_pred HHHHHhc-ccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccc
Confidence 7766432 1223445666766666665432 4578888999999999999999986 5554321
Q ss_pred ----CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 310 ----GTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 310 ----~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+..+.++|+.++.. +.+..+++++||.+.++..++. ..+++|++++.
T Consensus 318 ~~~~~~~g~~~~~~~~~~----~~~~~~l~~~gV~v~pg~~fg~-----~~~~iRis~~~ 368 (391)
T 3bwn_A 318 GKSLESYPAFAWLGTKEE----TDLVSELRRHKVMSRAGERCGS-----DKKHVRVSMLS 368 (391)
T ss_dssp TEEECCCCSEEEEEESSS----CCHHHHHHHTTEECEEGGGGTC-----CTTEEEEESCS
T ss_pred cccCCCcceEEEecCCcH----HHHHHHHHHCCEEEccCCCCCC-----CCCEEEEEecC
Confidence 12334789988742 3566777778999999876643 14579999984
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.7e-14 Score=171.48 Aligned_cols=317 Identities=13% Similarity=0.086 Sum_probs=180.9
Q ss_pred ceeeeec--CCCC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIAS--ENYT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~--~n~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.|.+.++ .+++ +|.+.+|+.+.+. ... +. . ..... +...+++++++++++.+..+++++||++|+.
T Consensus 51 ~lD~~~~~~~~~lG~~~p~v~~A~~~~~~-~~~--~~-~-~~~~~----~~~~~la~~l~~~~~~~~~v~~~~ggseA~~ 121 (452)
T 3n5m_A 51 YLDGMSGLWCVNSGYGRKELAEAAYKQLQ-TLS--YF-P-MSQSH----EPAIKLAEKLNEWLGGEYVIFFSNSGSEANE 121 (452)
T ss_dssp EEETTHHHHTCTTCBCCHHHHHHHHHHHT-TCC--CC-C-TTSEE----HHHHHHHHHHHHHHTSCEEEEEESSHHHHHH
T ss_pred EEECCcchhhccCCCCCHHHHHHHHHHHH-hcC--Cc-c-cccCC----HHHHHHHHHHHHhCCCCceEEEeCchHHHHH
Confidence 4555555 2333 5779999888884 221 11 1 11112 4455566689998886633777779999999
Q ss_pred HHHHHcc-----C---CCCEEEEeeccCCccchhhHHhhh----------CCceeEEEEecCCCCCCC-C---------H
Q psy13354 104 AVFFSVL-----N---PGDTIMGMSLQEGGHLTHGMMLNM----------SGKWFNSICYGLNKKEKI-D---------Y 155 (1342)
Q Consensus 104 ~al~al~-----~---pGD~Vlv~~~~~~~~~s~~~~~~~----------~g~~~~~v~~~~~~~~~i-d---------~ 155 (1342)
.+++++. . ++|+|++....+.++........- ...++..++.+....... | +
T Consensus 122 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (452)
T 3n5m_A 122 TAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECV 201 (452)
T ss_dssp HHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHH
Confidence 9999886 5 789999877666554322211100 001122332221111100 2 8
Q ss_pred HHHHHHHH---hcCCeEEEEcCC-CCCc-ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCC--CCCC-CCcE
Q psy13354 156 KKVEYLAK---KNKPKLIIAGAS-AYSQ-YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYP--NPVP-FADF 222 (1342)
Q Consensus 156 e~Le~~i~---~~~~~liv~~~s-~~~~-~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~--~~l~-~~Di 222 (1342)
++|++.++ ..+.+++++.+. ++++ ..+ +++|+++|++||++||+||+|. +|.. +... .... ..|+
T Consensus 202 ~~le~~l~~~~~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~--g~~~~~~~~~~~~di 279 (452)
T 3n5m_A 202 KEVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRT--GKAFGFMNYDVKPDI 279 (452)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT--SSSSGGGGTTCCCSE
T ss_pred HHHHHHHHhcCCCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcc--cccchhhhcCCCCCE
Confidence 99999887 334566777665 2253 233 9999999999999999999986 3221 1111 1111 2466
Q ss_pred EEecCCccCCCC-Ce-eEEEEechhHHHHhh----cc--CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGP-RG-GFILMKKKYKKIINS----AV--FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKI 294 (1342)
Q Consensus 223 vv~S~sK~l~gp-~G-G~iv~~~~l~~~l~~----~~--~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~ 294 (1342)
++ +||+++++ .. |++++++++++.+.. .. ....++ . ++..++++.+..+...+ +.+.+++.++.++
T Consensus 280 ~t--~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~-~-~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~ 353 (452)
T 3n5m_A 280 IT--MAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFG-G-NPAACALALKNLEIIEN--ENLIERSAQMGSL 353 (452)
T ss_dssp EE--ECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSST-T-CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHH
T ss_pred Ee--ecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCC-C-CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHH
Confidence 64 66999442 22 999999999888743 11 112222 2 33444444444443321 2345667777777
Q ss_pred HHHHHHhC----C-cEEeeCCCCCeEEEEEccCCCC---------CHHHHHHHHHHCCceeeeccCCCCCCCcccccccc
Q psy13354 295 LSKILDQR----G-IRIVSGGTKSHIILVDLRNKKI---------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIR 360 (1342)
Q Consensus 295 l~~~L~~~----g-~~~~~~~~~~~~v~i~~~~~~~---------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lR 360 (1342)
+++.|.+. + +.... ..+.++++.+..... ..++...+++ +||.+.+...|.. .. .+++|
T Consensus 354 l~~~L~~~~~~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~-~~---~~~iR 426 (452)
T 3n5m_A 354 LLEQLKEEIGEHPLVGDIR--GKGLLVGIELVNDKETKEPIDNDKIASVVNACKE-KGLIIGRNGMTTA-GY---NNILT 426 (452)
T ss_dssp HHHHHHHHHTTCTTEEEEE--ESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHH-TTEECEECTTSST-TC---CCEEE
T ss_pred HHHHHHHHHhcCCCeEEEE--EEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHH-CCcEEeecCcccC-CC---CCEEE
Confidence 77777653 2 22222 233455555532111 1245555555 5999998765532 21 46799
Q ss_pred ccccccccc
Q psy13354 361 LGSSAITTR 369 (1342)
Q Consensus 361 i~~~~~~t~ 369 (1342)
++++..++.
T Consensus 427 i~~~~~~t~ 435 (452)
T 3n5m_A 427 LAPPLVISS 435 (452)
T ss_dssp ECCCTTCCH
T ss_pred EECCCCCCH
Confidence 987776554
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-15 Score=176.95 Aligned_cols=238 Identities=16% Similarity=0.160 Sum_probs=158.3
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc---CCCCcEEEEEccCcccHHHHHHHHHHHhccCCC--CCCCCcccCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK---KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGI--DGNGGITSQPCG 454 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~---~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~--~~~~~~~~~~c~ 454 (1342)
++..+|.| ++++|++..++.+...+.. +..++.++|+||+|+|||++++.+++.+..... .......+..|.
T Consensus 11 ~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 11 VLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp HHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred hcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 56667777 7899999999999998854 355667999999999999999999998843100 000011112222
Q ss_pred CCcchhhhccCCCccEEEEcc-CCCcCHHH-HHHHHHHHhhcCccCCceEEEeccCccCCHH--HHHHHHHhhc---CC-
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDA-ASTRGINE-MAQLLEQTIYAPINARYKIYVIDEVHMLTHH--AFNAMLKTLE---EP- 526 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~-~~~~~~~~-i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~--~~~~Ll~~Le---~p- 526 (1342)
.+.+...+.......+ .... ........ +..+...+. ..+.+.+|+|||+|.+... ..+.|..+++ ..
T Consensus 88 ~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~ 163 (387)
T 2v1u_A 88 HRETPYRVASAIAEAV-GVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELG 163 (387)
T ss_dssp TSCSHHHHHHHHHHHH-SCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-
T ss_pred cCCCHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcC
Confidence 2221111000000000 0000 00111222 222222221 1344669999999998654 4555555543 32
Q ss_pred -CCcEEEEEEeCCC---CCChHHHhccE--EEEEEcCCCHHHHHHHHHHHHHh--cCCCcchhHHHHHHHhcC---CcHH
Q psy13354 527 -PKYIKFILATTEP---QKIPITVLSRC--IQFNLKKMLHHDIVNNLCYILNK--ENIKFETSALNLIATGAQ---GSMR 595 (1342)
Q Consensus 527 -~~~~vlIl~t~~~---~kl~~~L~sR~--~~i~~~~l~~~el~~~l~~~~~~--~g~~i~~~al~~La~~~~---g~lr 595 (1342)
+..+++|++++.. ..+.+.+.+|+ ..+.|++++.+++..++..++.. .+..+++++++.+++.++ ||+|
T Consensus 164 ~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 164 DRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDAR 243 (387)
T ss_dssp ----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHH
T ss_pred CCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHH
Confidence 5677889999887 57788999999 79999999999999999999876 567899999999999998 9999
Q ss_pred HHHHHHHHHHhhc----CCCCCHHHHHHHhccC
Q psy13354 596 DALSLTDQAINYS----SEKITLNSMQEMLSII 624 (1342)
Q Consensus 596 ~a~~~L~kl~~~~----~~~It~e~V~~~v~~~ 624 (1342)
.+++.++.+..++ ...|+.++|.+++...
T Consensus 244 ~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 244 RALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 9999999987665 2459999999887554
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-15 Score=176.89 Aligned_cols=217 Identities=17% Similarity=0.167 Sum_probs=155.5
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc---CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK---KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~---~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
+|..+|.| ++++|++..++.+...+.. +..+++++|+||+|+|||++++.+++.+......
T Consensus 12 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~------------- 75 (384)
T 2qby_B 12 FIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKE------------- 75 (384)
T ss_dssp TTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHH-------------
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhh-------------
Confidence 56677777 7899999999988877754 5666789999999999999999999988431000
Q ss_pred cchhhhccCC-CccEEEEccCCCc------------------------CHHH-HHHHHHHHhhcCccCCceEEEeccCcc
Q psy13354 457 SVCVKIDNGC-FMDYIEMDAASTR------------------------GINE-MAQLLEQTIYAPINARYKIYVIDEVHM 510 (1342)
Q Consensus 457 ~~~~~~~~~~-~~d~~~i~~~~~~------------------------~~~~-i~~ii~~~~~~p~~~~~rvviIDE~~~ 510 (1342)
..+. ...++.+++.... .... +..+.+.+ ...+.+|+|||+|.
T Consensus 76 ------~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~vlilDEi~~ 144 (384)
T 2qby_B 76 ------DEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT-----RNIRAIIYLDEVDT 144 (384)
T ss_dssp ------SSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH-----SSSCEEEEEETTHH
T ss_pred ------hcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh-----ccCCCEEEEECHHH
Confidence 0000 0122333321111 0111 22222222 11223999999998
Q ss_pred CCHHH-HHH-HHHhhcCCCCcEEEEEEeCCC---CCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHh--cCCCcchhH
Q psy13354 511 LTHHA-FNA-MLKTLEEPPKYIKFILATTEP---QKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNK--ENIKFETSA 582 (1342)
Q Consensus 511 L~~~~-~~~-Ll~~Le~p~~~~vlIl~t~~~---~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~--~g~~i~~~a 582 (1342)
+.... .+. |..+++.. ..+.+|++++.. +.+.+.+.+|+ ..+.|++++.+++.+++..++.. .+..+++++
T Consensus 145 l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~ 223 (384)
T 2qby_B 145 LVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEI 223 (384)
T ss_dssp HHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHH
T ss_pred hccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHH
Confidence 86432 344 44445444 678899999887 57788999995 79999999999999999999875 456799999
Q ss_pred HHHHHHhcC---CcHHHHHHHHHHHHhhcC--CCCCHHHHHHHhccC
Q psy13354 583 LNLIATGAQ---GSMRDALSLTDQAINYSS--EKITLNSMQEMLSII 624 (1342)
Q Consensus 583 l~~La~~~~---g~lr~a~~~L~kl~~~~~--~~It~e~V~~~v~~~ 624 (1342)
++.+++.++ ||+|.+++.++.+...+. ..|+.++|.+++...
T Consensus 224 ~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 224 LSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 999999998 999999999999887764 469999999887554
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-14 Score=175.05 Aligned_cols=302 Identities=11% Similarity=0.050 Sum_probs=179.7
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHccC------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLN------ 111 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~~------ 111 (1342)
.+|.+.+++.+.+.. +. + +.+..+.. ++..++++.++++++.+ +.+++++||++|+..++.++..
T Consensus 67 ~~~~v~~a~~~~~~~-~~--~--~~~~~~~~---~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g 138 (449)
T 3a8u_X 67 TRKEIQEAVAKQLST-LD--Y--SPGFQYGH---PLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKG 138 (449)
T ss_dssp SCHHHHHHHHHHTTT-CS--C--CCSSSCCC---HHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHh-CC--C--ccccccCC---HHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 367799998888742 21 1 11101111 33445666888888654 4556666999999999988753
Q ss_pred --CCCEEEEeeccCCccchhhHHhhhCC------------ceeEEEEecCC--CC-CCCC--------HHHHHHHHHh--
Q psy13354 112 --PGDTIMGMSLQEGGHLTHGMMLNMSG------------KWFNSICYGLN--KK-EKID--------YKKVEYLAKK-- 164 (1342)
Q Consensus 112 --pGD~Vlv~~~~~~~~~s~~~~~~~~g------------~~~~~v~~~~~--~~-~~id--------~e~Le~~i~~-- 164 (1342)
+||+|++.+..+.+...... ...| .++..++++.. .. ..+| ++++++.+++
T Consensus 139 ~~~~~~vi~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 216 (449)
T 3a8u_X 139 QATKTKMIGRARGYHGVNIAGT--SLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD 216 (449)
T ss_dssp CTTCCEEEEETTCCCCSSHHHH--HHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCcCCCChhhh--hccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC
Confidence 68999987766654432211 1111 12345544431 11 0146 9999999874
Q ss_pred -cCCeEEEEcCCCC-Cc-ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCCCCC-CCcEEEecCCccCCC--
Q psy13354 165 -NKPKLIIAGASAY-SQ-YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPNPVP-FADFITSTTHKSLRG-- 233 (1342)
Q Consensus 165 -~~~~liv~~~s~~-~~-~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~~l~-~~Divv~S~sK~l~g-- 233 (1342)
.++++|++.+.++ ++ ..+ +++|.++|++||++||+||+|. +|..+......... ..|++ |+||++++
T Consensus 217 ~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~G~ 294 (449)
T 3a8u_X 217 ASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTNGA 294 (449)
T ss_dssp GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTS
T ss_pred CCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccCCC
Confidence 2446666655433 23 356 9999999999999999999994 44321100000011 24766 67799954
Q ss_pred CCeeEEEEechhHHHHhhcc---------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-
Q psy13354 234 PRGGFILMKKKYKKIINSAV---------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG- 303 (1342)
Q Consensus 234 p~GG~iv~~~~l~~~l~~~~---------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g- 303 (1342)
...|++++++++++.+.... ..+.++ . ++..++++.+..+.+.+ +.+.+++.++++++.+.|.+.+
T Consensus 295 ~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~-~-~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~ 370 (449)
T 3a8u_X 295 IPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYS-A-HPVACAAGLAALCLLQK--ENLVQSVAEVAPHFEKALHGIKG 370 (449)
T ss_dssp SCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTT-T-CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHTTTT
T ss_pred CceEEEEECHHHHHHhhccCcccccccccccCCCc-c-cHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHhc
Confidence 23488899999988887631 111222 2 23333333333443321 2356788888999999997743
Q ss_pred cEEee-CCCCCeEEEEEccCCCCC-----HHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 304 IRIVS-GGTKSHIILVDLRNKKIT-----GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 304 ~~~~~-~~~~~~~v~i~~~~~~~~-----~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++... .+..++++|+.++..... .++...++++ ||.+.+. .+.+|++++..++
T Consensus 371 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----------g~~iRis~~~~~t 429 (449)
T 3a8u_X 371 AKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKA-GFYVRFG-----------GDTLQFGPTFNSK 429 (449)
T ss_dssp STTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHH-TEECEEE-----------TTEEEECCCTTCC
T ss_pred CCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHC-CcEEecC-----------CCEEEEECCCcCC
Confidence 22111 113457888888754222 2566667665 9999875 1369999765544
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=178.28 Aligned_cols=293 Identities=14% Similarity=0.111 Sum_probs=179.3
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC------C
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN------P 112 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~------p 112 (1342)
.+|.+.+++.+.+.. +. .... .| .. +...++++.+++++|.+.+++++ ||++|+..++.++.. +
T Consensus 57 ~~~~v~~a~~~~~~~-~~--~~~~-~~-~~----~~~~~l~~~la~~~g~~~v~~~~-gg~~a~~~al~~~~~~~~~~~~ 126 (397)
T 2ord_A 57 SHPRLVEAIKDQAEK-LI--HCSN-LF-WN----RPQMELAELLSKNTFGGKVFFAN-TGTEANEAAIKIARKYGKKKSE 126 (397)
T ss_dssp TCHHHHHHHHHHHHH-CS--CCCT-TS-EE----HHHHHHHHHHHHTTTSCEEEEES-SHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHh-cc--cCcc-cc-CC----HHHHHHHHHHHHhcCCCeEEEeC-CHHHHHHHHHHHHHHHhhcCCC
Confidence 367799999888753 32 1111 12 12 34455666899999876555544 999999999998753 5
Q ss_pred -CCEEEEeeccCCccchhhHHhhhCCce----------eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cc
Q psy13354 113 -GDTIMGMSLQEGGHLTHGMMLNMSGKW----------FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QY 180 (1342)
Q Consensus 113 -GD~Vlv~~~~~~~~~s~~~~~~~~g~~----------~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~ 180 (1342)
++.|++.+..+.+.... .+...|.. ..++.++.+ |++++++.+++ ++++|+++++++| +.
T Consensus 127 ~~~~vi~~~~~yh~~~~~--~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~-~~~~v~~~~~~nptG~ 198 (397)
T 2ord_A 127 KKYRILSAHNSFHGRTLG--SLTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSE-DVCAVFLEPIQGESGI 198 (397)
T ss_dssp TCCEEEEEBTCCCCSSHH--HHHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCT-TEEEEEECSEECTTTC
T ss_pred CCceEEEEcCCcCCCchh--hhhccCChhhccccCCCCCCeeEecCC-----CHHHHHHHhhc-CeEEEEEecccCCCCc
Confidence 47888776555433221 22223321 013334443 89999998864 5677777776665 33
Q ss_pred -----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhh
Q psy13354 181 -----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINS 251 (1342)
Q Consensus 181 -----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~ 251 (1342)
.++++|+++|++||++||+||+|+ +....+.... .++ .+|++ |+||+++++.+ |+++++++++ .+..
T Consensus 199 ~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~ 274 (397)
T 2ord_A 199 VPATKEFLEEARKLCDEYDALLVFDEVQC-GMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGAVIVNERAN-VLEP 274 (397)
T ss_dssp EECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECSTTC-CCCT
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCccchhhhhhCCCCCee--eeccccCCCcCeEEEEEchHhc-ccCC
Confidence 479999999999999999999996 4322222111 011 25766 66899953223 9999998876 5543
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEee-CCCCCeEEEEEccCCCCCHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVS-GGTKSHIILVDLRNKKITGK 328 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~-~~~~~~~v~i~~~~~~~~~~ 328 (1342)
......++ .+...++++..++.. ... ++..+++.++++++.+.|++. +++... .+..++++++.++......+
T Consensus 275 ~~~~~~~~-~~~~~~~a~~~~l~~-~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 350 (397)
T 2ord_A 275 GDHGTTFG-GNPLACRAGVTVIKE-LTK--EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNRE 350 (397)
T ss_dssp TSSCCSST-TCHHHHHHHHHHHHH-HTS--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHH
T ss_pred CCcCCCCC-CCHHHHHHHHHHHHH-HHh--CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChHHHHH
Confidence 22222222 334444444444433 332 356788888999999988775 232111 11235678888875433455
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+...+++ +||.+.+.. .+.+|++++..++
T Consensus 351 l~~~l~~-~gi~v~~~~----------~~~iRis~~~~~~ 379 (397)
T 2ord_A 351 VATKCFE-NKLLVVPAG----------NNTIRFLPPLTVE 379 (397)
T ss_dssp HHHHHHH-TTEECEEET----------TTEEEECCCTTCC
T ss_pred HHHHHHH-CCCEEccCC----------CCEEEEECCcCCC
Confidence 6666665 699998751 3469999765444
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=182.28 Aligned_cols=217 Identities=18% Similarity=0.151 Sum_probs=146.7
Q ss_pred HHHHHHHHhCCCCceEecCCH-HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCC---
Q psy13354 78 AINRLKKIFNAEAANVQPHSG-SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEK--- 152 (1342)
Q Consensus 78 ~~~~la~~~g~~~~vi~~~sG-s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~--- 152 (1342)
+++.+++++|++++++++ +| +.|+.++++++++|||+|++.. ++|.+....+...|. .++.++.+ +++.
T Consensus 200 aE~~lA~~fGa~~a~~v~-nGts~An~~ai~al~~pGD~VLv~r---~~H~S~~~~l~lsGa--~pv~v~~~~~~~gi~~ 273 (715)
T 3n75_A 200 AEQYIARVFNADRSYMVT-NGTSTANKIVGMYSAPAGSTILIDR---NCHKSLTHLMMMSDV--TPIYFRPTRNAYGILG 273 (715)
T ss_dssp HHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHHCCTTCEEEEES---SCCHHHHHHHHHSCC--EEEEECCCBCTTCCBC
T ss_pred HHHHHHHHhCCCCceEEC-cHHHHHHHHHHHHhCCCCCEEEECC---CccHHHHHHHHHcCC--EEEEEecccccccccc
Confidence 444999999999988888 55 6899999999999999999666 566666666777787 44444433 2232
Q ss_pred -C-----CHHHHHHHHHhcC----CeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC--CCCCC-
Q psy13354 153 -I-----DYKKVEYLAKKNK----PKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY--PNPVP- 218 (1342)
Q Consensus 153 -i-----d~e~Le~~i~~~~----~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~--~~~l~- 218 (1342)
+ |+++++++++++. |++++++++++. ...++++|+++|++++ |++||||+.+....... ...+.
T Consensus 274 ~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~al~~ 351 (715)
T 3n75_A 274 GIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSG 351 (715)
T ss_dssp CCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTSS
T ss_pred CcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEccccccccccCCcccccccccc
Confidence 3 8999999998642 235555455544 5559999999998774 79999998765222111 12222
Q ss_pred --CCcEE---EecCCccCCCCC-eeEEEEechhH-HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy13354 219 --FADFI---TSTTHKSLRGPR-GGFILMKKKYK-KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKN 291 (1342)
Q Consensus 219 --~~Div---v~S~sK~l~gp~-GG~iv~~~~l~-~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~ 291 (1342)
.+|++ ++|+||+++|+. ||++.+++++. ..+.........++++.+..+++.++...+......+.++++.++
T Consensus 352 g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~ 431 (715)
T 3n75_A 352 GRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIER 431 (715)
T ss_dssp SCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 14654 899999998874 58888877532 233332222333455555666655554443222455678899999
Q ss_pred HHHHHHHHHhC
Q psy13354 292 AKILSKILDQR 302 (1342)
Q Consensus 292 a~~l~~~L~~~ 302 (1342)
+.++++.|.+.
T Consensus 432 a~~~r~~L~~i 442 (715)
T 3n75_A 432 AIKFRKEIKRL 442 (715)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998774
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=169.41 Aligned_cols=193 Identities=15% Similarity=0.159 Sum_probs=150.2
Q ss_pred hccCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccC
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQ 451 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~ 451 (1342)
..+.+.+|++++|++.+++.|.+.+.. ...++++|||||||||||++|+++++.+.+
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~------------ 71 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------------ 71 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS------------
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC------------
Confidence 346677999999999999999988741 234578999999999999999999998831
Q ss_pred CCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------HH
Q psy13354 452 PCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------HH 514 (1342)
Q Consensus 452 ~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~~ 514 (1342)
..++.++++. ......++.++..+.. ..+.||+|||+|.+. ..
T Consensus 72 ----------------~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~ 131 (322)
T 1xwi_A 72 ----------------STFFSISSSDLVSKWLGESEKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSENESEAARR 131 (322)
T ss_dssp ----------------CEEEEEECCSSCCSSCCSCHHHHHHHHHHHHH----TSSEEEEEETTTGGGCCSSSCCTTHHHH
T ss_pred ----------------CcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHh----cCCcEEEeecHHHhccccccccchHHHH
Confidence 1233343321 1223456666665543 345699999999882 23
Q ss_pred HHHHHHHhhcC---CCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhc
Q psy13354 515 AFNAMLKTLEE---PPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGA 590 (1342)
Q Consensus 515 ~~~~Ll~~Le~---p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~ 590 (1342)
..+.|+..++. ++..+++|.+||.++.+.+++++|+ ..+.++.|+.++...+++.+++..+..+++..++.|++.+
T Consensus 132 ~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t 211 (322)
T 1xwi_A 132 IKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKT 211 (322)
T ss_dssp HHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 45677777765 4577889999999999999999999 7899999999999999999998888888999999999999
Q ss_pred CC-cHHHHHHHHHHHHhh
Q psy13354 591 QG-SMRDALSLTDQAINY 607 (1342)
Q Consensus 591 ~g-~lr~a~~~L~kl~~~ 607 (1342)
.| +.+++.+++..+...
T Consensus 212 ~G~sgadl~~l~~~A~~~ 229 (322)
T 1xwi_A 212 DGYSGADISIIVRDALMQ 229 (322)
T ss_dssp TTCCHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 77 577777777766543
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=169.04 Aligned_cols=204 Identities=15% Similarity=0.196 Sum_probs=153.5
Q ss_pred ccCCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccC
Q psy13354 384 KYRPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQ 451 (1342)
Q Consensus 384 k~~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~ 451 (1342)
+-...+|+|+.|.+.+++.|.+.+.. -..+.++|||||||||||++|+++|+++++
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~------------ 242 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA------------ 242 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC------------
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC------------
Confidence 34456899999999999999888732 256789999999999999999999999974
Q ss_pred CCCCCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCCH------------
Q psy13354 452 PCGKCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH------------ 513 (1342)
Q Consensus 452 ~c~~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~------------ 513 (1342)
.|+.++++... +...+++++..+... .+-||+|||+|.+..
T Consensus 243 -----------------~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~ 301 (437)
T 4b4t_I 243 -----------------TFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN----APSIVFIDEIDAIGTKRYDSNSGGERE 301 (437)
T ss_dssp -----------------EEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT----CSEEEEEEEESSSSCCCSCSSCSSCCH
T ss_pred -----------------CEEEEEHHHhhhccCchHHHHHHHHHHHHHhc----CCcEEEEehhhhhcccCCCCCCCccHH
Confidence 46666654321 123567777666543 345999999997721
Q ss_pred --HHHHHHHHhhc--CCCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchh-HHHH
Q psy13354 514 --HAFNAMLKTLE--EPPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETS-ALNL 585 (1342)
Q Consensus 514 --~~~~~Ll~~Le--~p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~-al~~ 585 (1342)
...+.|+..++ +....+++|++||.++.++++|++ |+ ..+.|+.|+.++..++++.++++..+ +++ .++.
T Consensus 302 ~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l--~~dvdl~~ 379 (437)
T 4b4t_I 302 IQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL--SEDVNLET 379 (437)
T ss_dssp HHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB--CSCCCHHH
T ss_pred HHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC--CCcCCHHH
Confidence 23456666665 345678999999999999999997 88 68999999999999999888876543 333 4788
Q ss_pred HHHhcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 586 IATGAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 586 La~~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
||+.+.| +-.++.+++..+...+ ...||.+|+.+++.
T Consensus 380 LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 380 LVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKE 421 (437)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 8998865 6777777777765554 23488888887764
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-14 Score=172.23 Aligned_cols=237 Identities=14% Similarity=0.124 Sum_probs=164.4
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc---CCCCc--EEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK---KRLHH--AYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~---~~~~~--~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
++..+|.| ++++|++..++.+...+.. +..++ .++|+||+|+|||++++.+++.+.+.. .....+..|.
T Consensus 9 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~i~~~ 82 (389)
T 1fnn_A 9 VFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT---TARFVYINGF 82 (389)
T ss_dssp GGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC---CCEEEEEETT
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc---CeeEEEEeCc
Confidence 56678888 7899999999998888865 44444 799999999999999999999986421 0111223333
Q ss_pred CCcchhhhccCCCccEEEEcc-CCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC----Cc
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDA-ASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP----KY 529 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~-~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~----~~ 529 (1342)
.+.+...+.......+ .... ........+.+.+...... .+++.+|+|||++.++.+..+.|++++++.+ ..
T Consensus 83 ~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~ 159 (389)
T 1fnn_A 83 IYRNFTAIIGEIARSL-NIPFPRRGLSRDEFLALLVEHLRE--RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFR 159 (389)
T ss_dssp TCCSHHHHHHHHHHHT-TCCCCSSCCCHHHHHHHHHHHHHH--TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCC
T ss_pred cCCCHHHHHHHHHHHh-CccCCCCCCCHHHHHHHHHHHHhh--cCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCC
Confidence 3322111110000000 0000 0011122222222211111 2446799999999999889999999998754 47
Q ss_pred EEEEEEeCCC---CCChHHHhccEE--EEEEcCCCHHHHHHHHHHHHHhc--CCCcchhHHHHHHHhc---------CCc
Q psy13354 530 IKFILATTEP---QKIPITVLSRCI--QFNLKKMLHHDIVNNLCYILNKE--NIKFETSALNLIATGA---------QGS 593 (1342)
Q Consensus 530 ~vlIl~t~~~---~kl~~~L~sR~~--~i~~~~l~~~el~~~l~~~~~~~--g~~i~~~al~~La~~~---------~g~ 593 (1342)
+.+|++++.+ +.+.+.+.+|+. .+.|++++.+++.+++..++... ...+++++++.+++.+ +||
T Consensus 160 ~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~ 239 (389)
T 1fnn_A 160 IALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGD 239 (389)
T ss_dssp EEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCC
T ss_pred EEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCc
Confidence 8899999887 567788889984 79999999999999999998762 3478999999999999 899
Q ss_pred HHHHHHHHHHHHhhc----CCCCCHHHHHHHhccCc
Q psy13354 594 MRDALSLTDQAINYS----SEKITLNSMQEMLSIID 625 (1342)
Q Consensus 594 lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~~~ 625 (1342)
+|.+.+.++.+...+ ...|+.++|.+++....
T Consensus 240 ~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 240 ARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 999999999877654 24599999887765443
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=177.06 Aligned_cols=164 Identities=20% Similarity=0.191 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCC
Q psy13354 74 IEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEK 152 (1342)
Q Consensus 74 Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~ 152 (1342)
..+++++++++++|.+++++++ +|++|+..++. ++++||+|+++...|+++.... ......|. +++.++.+
T Consensus 134 ~~~~l~~~la~~~g~~~~i~~~-sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~---- 205 (464)
T 1ibj_A 134 TRDALESLLAKLDKADRAFCFT-SGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV--VVKRVNTT---- 205 (464)
T ss_dssp HHHHHHHHHHHHHTCSEEEEES-SHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTC--EEEEECTT----
T ss_pred HHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCC--EEEEeCCC----
Confidence 4566777999999988666666 99999988875 7899999998876665543222 12345566 45555654
Q ss_pred CCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCc
Q psy13354 153 IDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHK 229 (1342)
Q Consensus 153 id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK 229 (1342)
|++++++++++ ++++++++++++| ...++++|+++|++||++||+|++|..|... .+++ .+|++++|+||
T Consensus 206 -d~~~l~~~i~~-~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~-----~~~~~~~div~~S~sK 278 (464)
T 1ibj_A 206 -KLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS-----RPLELGADIVMHSATK 278 (464)
T ss_dssp -SHHHHHHHCCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC-----CGGGTTCSEEEEETTT
T ss_pred -CHHHHHHHhcc-CceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccC-----ChhhcCCEEEEECCcc
Confidence 89999998864 4677777777666 4459999999999999999999999765431 1222 36999999999
Q ss_pred cCCCCCe---eEEEEec-hhHHHHhhc
Q psy13354 230 SLRGPRG---GFILMKK-KYKKIINSA 252 (1342)
Q Consensus 230 ~l~gp~G---G~iv~~~-~l~~~l~~~ 252 (1342)
+++|+.| |++++++ ++++.+...
T Consensus 279 ~~~g~~Gl~~G~l~~~~~~l~~~l~~~ 305 (464)
T 1ibj_A 279 FIAGHSDVMAGVLAVKGEKLAKEVYFL 305 (464)
T ss_dssp TTTCSSCCCCEEEEECSHHHHHHHHHH
T ss_pred cccCCCCCcEEEEEEChHHHHHHHHHH
Confidence 9976655 9999996 777777653
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-15 Score=171.81 Aligned_cols=205 Identities=24% Similarity=0.309 Sum_probs=148.5
Q ss_pred cccccchhhHHHHHHHHHc-------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 391 NTLIGQNHISKSLINALDK-------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~-------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
++++||+.+++.+..++.. +..++.+||+||||||||++|+.+++.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~----------------- 77 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP----------------- 77 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC-----------------
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----------------
Confidence 4589999999999888865 3456779999999999999999999998631
Q ss_pred chhhhccCCCccEEEEccCCC--------cCHHHHHHHHHHHhhc-CccCCceEEEeccCccCCHHH------------H
Q psy13354 458 VCVKIDNGCFMDYIEMDAAST--------RGINEMAQLLEQTIYA-PINARYKIYVIDEVHMLTHHA------------F 516 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~--------~~~~~i~~ii~~~~~~-p~~~~~rvviIDE~~~L~~~~------------~ 516 (1342)
++.++++.. .....++++....... .....+.+|+|||++.+..+. +
T Consensus 78 ------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~ 145 (310)
T 1ofh_A 78 ------------FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQ 145 (310)
T ss_dssp ------------EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHH
T ss_pred ------------EEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHH
Confidence 222322211 1112344444322100 001235699999999986443 7
Q ss_pred HHHHHhhcCC----------CCcEEEEEEe----CCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHH-----------H
Q psy13354 517 NAMLKTLEEP----------PKYIKFILAT----TEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCY-----------I 570 (1342)
Q Consensus 517 ~~Ll~~Le~p----------~~~~vlIl~t----~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~-----------~ 570 (1342)
+.|++++++. +..+++|+++ +.+..+.+++.+|+ ..+.|++++.+++..++.+ .
T Consensus 146 ~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~ 225 (310)
T 1ofh_A 146 RDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKAL 225 (310)
T ss_dssp HHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHH
T ss_pred HHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHH
Confidence 8899999873 3467777774 35567889999999 6799999999999999883 3
Q ss_pred HHhcC--CCcchhHHHHHHHhc--------CCcHHHHHHHHHHHHhh-----c--CC---CCCHHHHHHHhccC
Q psy13354 571 LNKEN--IKFETSALNLIATGA--------QGSMRDALSLTDQAINY-----S--SE---KITLNSMQEMLSII 624 (1342)
Q Consensus 571 ~~~~g--~~i~~~al~~La~~~--------~g~lr~a~~~L~kl~~~-----~--~~---~It~e~V~~~v~~~ 624 (1342)
+...+ +.+++++++.|++.+ .||+|.+.+.+++++.. . .+ .||.++|++++...
T Consensus 226 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 226 MATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 33445 369999999999998 89999999999986621 1 12 29999999988754
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-14 Score=160.40 Aligned_cols=208 Identities=18% Similarity=0.263 Sum_probs=155.3
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcc
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGIT 449 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~ 449 (1342)
|..++.+..|++++|++.+++.+.+.+.. ...++.++|+||+|+|||++++++++.+...
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--------- 72 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--------- 72 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC---------
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC---------
Confidence 45678899999999999999888776532 2456789999999999999999999988531
Q ss_pred cCCCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH----------
Q psy13354 450 SQPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH---------- 513 (1342)
Q Consensus 450 ~~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~---------- 513 (1342)
++.++++. ..+...++.+++.+.. ..+.++++||+|.+..
T Consensus 73 --------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~il~iDeid~l~~~~~~~~~~~~ 128 (257)
T 1lv7_A 73 --------------------FFTISGSDFVEMFVGVGASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGH 128 (257)
T ss_dssp --------------------EEEECSCSSTTSCCCCCHHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTT
T ss_pred --------------------EEEEeHHHHHHHhhhhhHHHHHHHHHHHHH----cCCeeehhhhhhhhccCCCCCcCCCc
Confidence 22222221 1223456666666543 2346999999986631
Q ss_pred ----HHHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchh-HH
Q psy13354 514 ----HAFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETS-AL 583 (1342)
Q Consensus 514 ----~~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~-al 583 (1342)
...+.++..++. .+..+++|.+||.++.+.+++.+ |+ ..+.+..|+.++..++++.++++.. ++++ .+
T Consensus 129 ~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~ 206 (257)
T 1lv7_A 129 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDA 206 (257)
T ss_dssp CHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCH
T ss_pred hHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccH
Confidence 345667777764 34578889999999999998887 76 7889999999999999988876654 3333 37
Q ss_pred HHHHHhcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 584 NLIATGAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 584 ~~La~~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
..++..+.| +.|++.+.++++..++ ...|+.+++++++..
T Consensus 207 ~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 207 AIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 788999999 9999999999977665 245999999887743
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-14 Score=173.08 Aligned_cols=304 Identities=12% Similarity=0.019 Sum_probs=178.2
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc--CCCCEE
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL--NPGDTI 116 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~--~pGD~V 116 (1342)
+|.+.+++.+.+.. +. +.... |. . +...++++.++++++.+ +.+++++||++|+..++.++. ..+|+|
T Consensus 61 ~p~v~~a~~~~~~~-~~--~~~~~-~~-~----~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~v 131 (433)
T 1zod_A 61 HPEIVSVIGEYAGK-LD--HLFSE-ML-S----RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEI 131 (433)
T ss_dssp CHHHHHHHHHHHHH-CC--CCCTT-CC-C----HHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEE
T ss_pred CHHHHHHHHHHHHh-Cc--ccccc-cC-C----HHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeE
Confidence 67899999988853 21 11111 11 1 33444556888888754 556666699999999998653 345789
Q ss_pred EEeeccCCccchhhHHhh---------hCCceeEEEEecCC--CC--------CCCCHHHHHHHHHh---cCCeEEEEcC
Q psy13354 117 MGMSLQEGGHLTHGMMLN---------MSGKWFNSICYGLN--KK--------EKIDYKKVEYLAKK---NKPKLIIAGA 174 (1342)
Q Consensus 117 lv~~~~~~~~~s~~~~~~---------~~g~~~~~v~~~~~--~~--------~~id~e~Le~~i~~---~~~~liv~~~ 174 (1342)
++.+..+.+......... ....++..++++.. .. +.+|++++++.+++ .+++++++.+
T Consensus 132 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p 211 (433)
T 1zod_A 132 VGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEP 211 (433)
T ss_dssp EEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECS
T ss_pred EEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEcc
Confidence 887765544332211110 00123355544321 11 12469999998875 3456677655
Q ss_pred CCCC-c-ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCC--CCC-CCcEEEecCCccCCCCCe-eEEEEec
Q psy13354 175 SAYS-Q-YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPN--PVP-FADFITSTTHKSLRGPRG-GFILMKK 243 (1342)
Q Consensus 175 s~~~-~-~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp~G-G~iv~~~ 243 (1342)
.+++ + ..+ +++|+++|++||++||+||+|+ +|.. +.... ... ..|++ |+||+|+++.. |++++++
T Consensus 212 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~--g~~~~~~~~~~~~di~--s~sK~~~~G~~ig~~~~~~ 287 (433)
T 1zod_A 212 ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT--GTMFACQRDGVTPDIL--TLSKTLGAGLPLAAIVTSA 287 (433)
T ss_dssp EETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT--SSSSTHHHHTCCCSEE--EECHHHHTTSSCEEEEECH
T ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcC--chHhHHhhcCCCCCEE--EecccccCCCCeeEEEEhH
Confidence 4333 3 234 9999999999999999999997 3322 11110 011 24655 67799943212 9999999
Q ss_pred hhHHHHhhccCC--ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----Cc-EEeeCCCCCeEE
Q psy13354 244 KYKKIINSAVFP--GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GI-RIVSGGTKSHII 316 (1342)
Q Consensus 244 ~l~~~l~~~~~~--~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~-~~~~~~~~~~~v 316 (1342)
++++.+...... ..++ .+...++++.+++ +.+.+ ..+.+++.++++++.+.|.+. +. .... ..+.++
T Consensus 288 ~~~~~~~~~~~~~~~t~~-~~~~~~~a~~aal-~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~--~~g~~~ 361 (433)
T 1zod_A 288 AIEERAHELGYLFYTTHV-SDPLPAAVGLRVL-DVVQR--DGLVARANVMGDRLRRGLLDLMERFDCIGDVR--GRGLLL 361 (433)
T ss_dssp HHHHHHHHTTCCCCCTTT-TCHHHHHHHHHHH-HHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EETTEE
T ss_pred HHHHhhccCCCCCCCCCC-cCHHHHHHHHHHH-HHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--EEEEEE
Confidence 998888763222 2222 2333444444343 33221 134677778888888888763 32 2222 235677
Q ss_pred EEEccCC--------CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 317 LVDLRNK--------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 317 ~i~~~~~--------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
|+.++.. ....++...++ ++||.+.++..++. .+++|++++..++.
T Consensus 362 ~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~------~~~lRi~~~~~~t~ 415 (433)
T 1zod_A 362 GVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLPGM------GGVFRIAPPLTVSE 415 (433)
T ss_dssp EEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCTTS------CCEEEECCCTTCCH
T ss_pred EEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCCCC------CCEEEEECCcCCCH
Confidence 8877532 11345666666 56999988643321 35799987766553
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-13 Score=166.77 Aligned_cols=314 Identities=13% Similarity=0.035 Sum_probs=176.5
Q ss_pred ceeeeec--CCCC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH
Q psy13354 29 NIELIAS--ENYT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN 102 (1342)
Q Consensus 29 ~i~l~a~--~n~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~ 102 (1342)
.|.+.++ .+.+ +|.+++|+.+.+.. ....+.. ..+. .+...+++++++++++.+ +.+++++||++|+
T Consensus 53 ~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~-~~~~~~~---~~~~---~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~ 125 (460)
T 3gju_A 53 SIDAFAGLYCVNVGYGRQKIADAIATQAKN-LAYYHAY---VGHG---TEASITLAKMIIDRAPKGMSRVYFGLSGSDAN 125 (460)
T ss_dssp EEETTHHHHTCTTCBCCHHHHHHHHHHHHH-HSCCCCC---TTCC---CHHHHHHHHHHHHHSCTTEEEEEEESSHHHHH
T ss_pred EEECCcchhhccCCCCCHHHHHHHHHHHHh-ccccccc---cccC---CHHHHHHHHHHHhhCCCCcCEEEEeCchHHHH
Confidence 3555544 2333 57799999888753 3211221 1111 144555666888887544 4555666999999
Q ss_pred HHHHHHccC--------CCCEEEEeeccCCccchhhHHh----------hhCCceeEEEEecCC---CCCCCC-------
Q psy13354 103 QAVFFSVLN--------PGDTIMGMSLQEGGHLTHGMML----------NMSGKWFNSICYGLN---KKEKID------- 154 (1342)
Q Consensus 103 ~~al~al~~--------pGD~Vlv~~~~~~~~~s~~~~~----------~~~g~~~~~v~~~~~---~~~~id------- 154 (1342)
..+++++.. +++.|++....+.++......+ .....++..++++.. .+..++
T Consensus 126 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 205 (460)
T 3gju_A 126 ETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQH 205 (460)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHH
Confidence 999998863 5688888776665543222111 111223455544431 111123
Q ss_pred -HHHHHHHHHh---cCCeEEEEcCCCCCc--ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCC--CCC-CC
Q psy13354 155 -YKKVEYLAKK---NKPKLIIAGASAYSQ--YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPN--PVP-FA 220 (1342)
Q Consensus 155 -~e~Le~~i~~---~~~~liv~~~s~~~~--~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~--~l~-~~ 220 (1342)
++++++++.. .+.++|++.+.++++ ..+ +++|+++|++||++||+||+|. +|.. +.... ..+ ..
T Consensus 206 ~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~--g~~~~~~~~~~~p 283 (460)
T 3gju_A 206 CADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRL--GTMFGSDHYGIKP 283 (460)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT--SSSCHHHHHTCCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc--cccchHhhcCCCC
Confidence 6888888874 345677776644431 222 9999999999999999999987 3222 11110 011 24
Q ss_pred cEEEecCCccCCCC--CeeEEEEechhHHHHhhc-------cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy13354 221 DFITSTTHKSLRGP--RGGFILMKKKYKKIINSA-------VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKN 291 (1342)
Q Consensus 221 Divv~S~sK~l~gp--~GG~iv~~~~l~~~l~~~-------~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~ 291 (1342)
|+++ +||++++. ..|++++++++++.+... .....++. ++..++++.+.++.+.+ +...+++.++
T Consensus 284 di~t--~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~--~~~~~aaa~aal~~~~~--~~~~~~~~~~ 357 (460)
T 3gju_A 284 DLIT--IAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSA--HPICVAAGVANLELIDE--MDLVTNAGET 357 (460)
T ss_dssp SEEE--ECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTT--CHHHHHHHHHHHHHHHH--TTHHHHHHHH
T ss_pred Ceee--eehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCC--CHHHHHHHHHHHHHHHh--ccHHHHHHHH
Confidence 6664 56999552 339999999999888531 22222322 33444444444443321 1234445555
Q ss_pred HHHHHHHH----HhCC-cEEeeCCCCCeEEEEEccCCCC-----------CHHHHHHHHHHCCceeeeccCCCCCCCccc
Q psy13354 292 AKILSKIL----DQRG-IRIVSGGTKSHIILVDLRNKKI-----------TGKIAESILESANIICNKNSIPNDPEKPYF 355 (1342)
Q Consensus 292 a~~l~~~L----~~~g-~~~~~~~~~~~~v~i~~~~~~~-----------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~ 355 (1342)
.+++++.| .+.+ +.... ..+.++++.+..... ..++...+++ +||.+.+.. .
T Consensus 358 ~~~~~~~l~~~l~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~-----~---- 425 (460)
T 3gju_A 358 GAYFRAELAKAVGGHKNVGEVR--GDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAA-SGVIGRAMP-----Q---- 425 (460)
T ss_dssp HHHHHHHHHHHHTTSTTEEEEE--EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TTEECEECS-----S----
T ss_pred HHHHHHHHHHHHhcCCCeEEEe--eeeEEEEEEEccCccccccccchHHHHHHHHHHHHH-CCeEEecCC-----C----
Confidence 55555554 4433 22222 234566776653221 2245555555 599998753 1
Q ss_pred cccccccccccccc
Q psy13354 356 TSGIRLGSSAITTR 369 (1342)
Q Consensus 356 ~~~lRi~~~~~~t~ 369 (1342)
.+++|++++...+.
T Consensus 426 ~~~iRi~~~~~~t~ 439 (460)
T 3gju_A 426 GDILGFAPPLCLTR 439 (460)
T ss_dssp SCEEEECCCTTCCH
T ss_pred CCEEEEECCCCCCH
Confidence 35799987765553
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=168.51 Aligned_cols=186 Identities=18% Similarity=0.200 Sum_probs=145.4
Q ss_pred ccccchhhHHHHHHHHHc--------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 392 TLIGQNHISKSLINALDK--------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 392 ~lvGq~~~~~~L~~~l~~--------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+++|++.+++.+.+.+.. +...+.+||+||||||||++|+.+++.+.+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~------------- 98 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVR------------- 98 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSS-------------
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcC-------------
Confidence 799999999998877642 45556799999999999999999999997532110
Q ss_pred chhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccC---------CHHHHHHHHHh
Q psy13354 458 VCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHML---------THHAFNAMLKT 522 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L---------~~~~~~~Ll~~ 522 (1342)
...++.++.+.. .....+..++..+ ...+|+|||++.+ +.+.++.|++.
T Consensus 99 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~ 162 (309)
T 3syl_A 99 ---------KGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQV 162 (309)
T ss_dssp ---------SCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHH
T ss_pred ---------CCcEEEEcHHHhhhhcccccHHHHHHHHHhc-------CCCEEEEEChhhhccCCCcccccHHHHHHHHHH
Confidence 012333333211 1122345555444 2359999999977 77888999999
Q ss_pred hcCCCCcEEEEEEeCCCC-----CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhc------
Q psy13354 523 LEEPPKYIKFILATTEPQ-----KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGA------ 590 (1342)
Q Consensus 523 Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~------ 590 (1342)
+++.+.++++|++++... .+.++|++|+ ..+.|++++.+++..++..++++.+..+++++++.+++.+
T Consensus 163 l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (309)
T 3syl_A 163 MENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQ 242 (309)
T ss_dssp HHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTS
T ss_pred HhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccC
Confidence 999888898999887543 2347999999 9999999999999999999999999999999999999974
Q ss_pred --CCcHHHHHHHHHHHHh
Q psy13354 591 --QGSMRDALSLTDQAIN 606 (1342)
Q Consensus 591 --~g~lr~a~~~L~kl~~ 606 (1342)
.||+|.+.+.+++++.
T Consensus 243 ~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 243 PHFANARSIRNALDRARL 260 (309)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 4999999999998774
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-14 Score=170.72 Aligned_cols=205 Identities=16% Similarity=0.175 Sum_probs=152.9
Q ss_pred CCCCccccccchhhHHHHHHHHH------------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALD------------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~------------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
.+.+|+++.|.+.+++.|.+.+. .-..+.++|||||||||||++|+++|+++++
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~-------------- 241 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA-------------- 241 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--------------
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC--------------
Confidence 45589999999999999988752 1256789999999999999999999999974
Q ss_pred CCCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------H---
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------H--- 513 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~--- 513 (1342)
.++.++++... +...++.++..+... .+.||+|||+|.+. .
T Consensus 242 ---------------~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~----aP~IifiDEiDal~~~R~~~~~~~~~~~~ 302 (434)
T 4b4t_M 242 ---------------TFLKLAAPQLVQMYIGEGAKLVRDAFALAKEK----APTIIFIDELDAIGTKRFDSEKSGDREVQ 302 (434)
T ss_dssp ---------------EEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHH----CSEEEEEECTHHHHCCCSSGGGGTTHHHH
T ss_pred ---------------CEEEEehhhhhhcccchHHHHHHHHHHHHHhc----CCeEEeecchhhhhhccCCCCCCCchHHH
Confidence 46666654321 223566776655443 24599999999761 1
Q ss_pred HHHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 514 HAFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 514 ~~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
...+.|+..++.. ...+++|.+||.++.+++++++ |+ ..+.|+.|+.++..++++.++++.... ++-.++.||+
T Consensus 303 ~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~ 381 (434)
T 4b4t_M 303 RTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELAR 381 (434)
T ss_dssp HHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHH
Confidence 1345677777753 3567888999999999999987 88 789999999999999999888876542 1223788899
Q ss_pred hcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhccC
Q psy13354 589 GAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSII 624 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~~ 624 (1342)
.+.| +-.++.+++..+...+ ...|+.+|+.+++...
T Consensus 382 ~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 382 STDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 8865 7777777777665543 3458988888777543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=163.40 Aligned_cols=205 Identities=16% Similarity=0.220 Sum_probs=149.5
Q ss_pred cCCCCccccccchhhHHHHHHHHHcC------------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDKK------------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~~------------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~ 452 (1342)
..+.+|++++|++.+++.|.+.+... ..++.+||+||||||||++|+++++.++.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~------------- 77 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA------------- 77 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-------------
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------------
Confidence 45668999999999999998887541 55678999999999999999999998863
Q ss_pred CCCCcchhhhccCCCccEEEEccCCC----c--CHHHHHHHHHHHhhcCccCCceEEEeccCccC-----------CHHH
Q psy13354 453 CGKCSVCVKIDNGCFMDYIEMDAAST----R--GINEMAQLLEQTIYAPINARYKIYVIDEVHML-----------THHA 515 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~~i~~~~~----~--~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L-----------~~~~ 515 (1342)
.++.++.... . ....++.++..+.. ..+.||+|||++.+ ..+.
T Consensus 78 ----------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~ 137 (285)
T 3h4m_A 78 ----------------TFIRVVGSELVKKFIGEGASLVKDIFKLAKE----KAPSIIFIDEIDAIAAKRTDALTGGDREV 137 (285)
T ss_dssp ----------------EEEEEEGGGGCCCSTTHHHHHHHHHHHHHHH----TCSEEEEEETTHHHHBCCSSSCCGGGGHH
T ss_pred ----------------CEEEEehHHHHHhccchHHHHHHHHHHHHHH----cCCeEEEEECHHHhcccCccccCCccHHH
Confidence 2333333211 1 12234455544432 34569999999987 3333
Q ss_pred HHHHHH---hhc--CCCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q psy13354 516 FNAMLK---TLE--EPPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587 (1342)
Q Consensus 516 ~~~Ll~---~Le--~p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La 587 (1342)
.+.|.. .++ .....+++|+++|.++.+.+++.+ |+ ..+.+++|+.++..++++..++..+.. ++..+..++
T Consensus 138 ~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~ 216 (285)
T 3h4m_A 138 QRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIA 216 (285)
T ss_dssp HHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHH
Confidence 444444 443 344678899999999999999998 88 689999999999999999888776654 334577888
Q ss_pred HhcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 588 TGAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 588 ~~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
+.+.| +.+++.+++..+...+ ...||.+++.+++..
T Consensus 217 ~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 217 KMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 88776 7778888887766554 245999999988743
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=176.32 Aligned_cols=196 Identities=14% Similarity=0.163 Sum_probs=151.3
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCc
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGI 448 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~ 448 (1342)
.+..++.+..|++++|++.+++.|.+.+.. ...++++||+||||||||++|+++++.+.+
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~--------- 193 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN--------- 193 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---------
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---------
Confidence 456678899999999999999999988731 245578999999999999999999998832
Q ss_pred ccCCCCCCcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC----------
Q psy13354 449 TSQPCGKCSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT---------- 512 (1342)
Q Consensus 449 ~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~---------- 512 (1342)
..++.++++.. .....++.++..+.. ..+.||+|||+|.+.
T Consensus 194 -------------------~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~ 250 (444)
T 2zan_A 194 -------------------STFFSISSSDLVSKWLGESEKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSENESEA 250 (444)
T ss_dssp -------------------SEEEEECCC---------CCCTHHHHHHHHHH----SCSEEEEESCTTTTCCCSSCCCCGG
T ss_pred -------------------CCEEEEeHHHHHhhhcchHHHHHHHHHHHHHH----cCCeEEEEechHhhccCCCCccccH
Confidence 11223322211 011235555555433 345699999999882
Q ss_pred -HHHHHHHHHhhcC---CCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q psy13354 513 -HHAFNAMLKTLEE---PPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587 (1342)
Q Consensus 513 -~~~~~~Ll~~Le~---p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La 587 (1342)
....+.|+..++. ++..+++|++||.++.+.+++++|+ ..+.++.|+.++...++..++...+..+++..++.|+
T Consensus 251 ~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la 330 (444)
T 2zan_A 251 ARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELG 330 (444)
T ss_dssp GHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 3456788888876 4577889999999999999999999 7899999999999999999998888888999999999
Q ss_pred HhcCC-cHHHHHHHHHHHHhh
Q psy13354 588 TGAQG-SMRDALSLTDQAINY 607 (1342)
Q Consensus 588 ~~~~g-~lr~a~~~L~kl~~~ 607 (1342)
+.+.| +.+++.+++..++..
T Consensus 331 ~~t~G~sgadl~~l~~~a~~~ 351 (444)
T 2zan_A 331 RKTDGYSGADISIIVRDALMQ 351 (444)
T ss_dssp HHTTTCCHHHHHHHHHHHHTH
T ss_pred HHcCCCCHHHHHHHHHHHHHH
Confidence 99988 777888877776543
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=169.49 Aligned_cols=313 Identities=13% Similarity=0.053 Sum_probs=179.6
Q ss_pred ceeeeec--CCCC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH
Q psy13354 29 NIELIAS--ENYT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN 102 (1342)
Q Consensus 29 ~i~l~a~--~n~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~ 102 (1342)
.|.+.++ .+.+ +|.+.+|+.+.+.. ....+....+ ..+...+++++++++++.+ +.+++++||++|+
T Consensus 57 ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~-~~~~~~~~~~------~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~ 129 (472)
T 3hmu_A 57 ILDAMAGLWCVNIGYGRDELAEVAARQMRE-LPYYNTFFKT------THVPAIALAQKLAELAPGDLNHVFFAGGGSEAN 129 (472)
T ss_dssp EECTTHHHHTCTTCBCCHHHHHHHHHHHHH-CSCCCSSSSE------ECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHH
T ss_pred EEECCCchhhccCCCCCHHHHHHHHHHHHh-cccccccccc------CCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Confidence 3555554 3333 57799999988853 3211211111 1144455666888888654 4556666999999
Q ss_pred HHHHHHccC--------CCCEEEEeeccCCccchhhHHhhh---------CCceeEEEEecC--C-CCCCCC--------
Q psy13354 103 QAVFFSVLN--------PGDTIMGMSLQEGGHLTHGMMLNM---------SGKWFNSICYGL--N-KKEKID-------- 154 (1342)
Q Consensus 103 ~~al~al~~--------pGD~Vlv~~~~~~~~~s~~~~~~~---------~g~~~~~v~~~~--~-~~~~id-------- 154 (1342)
..+++++.. +++.|++....+.++......+.. ...++..++.+. . .++ .|
T Consensus 130 ~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~ 208 (472)
T 3hmu_A 130 DTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLAR 208 (472)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHH
Confidence 999998864 467888776666554322211110 111234454333 1 112 34
Q ss_pred HHHHHHHHHh---cCCeEEEEcCCCCC--cccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCC--CCC-CCc
Q psy13354 155 YKKVEYLAKK---NKPKLIIAGASAYS--QYID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPN--PVP-FAD 221 (1342)
Q Consensus 155 ~e~Le~~i~~---~~~~liv~~~s~~~--~~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~--~l~-~~D 221 (1342)
++++++.+.+ .+.++|++.+.+.+ ...+ +++|.++|++||++||+||+|. +|.. +.... ... .+|
T Consensus 209 ~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~--G~~~a~~~~~v~pd 286 (472)
T 3hmu_A 209 ARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRT--GNWFGTQTMGIRPH 286 (472)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT--SSSCHHHHHTCCCS
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCccc--CccchhHHhCCCCc
Confidence 7888888864 34566776553333 1223 9999999999999999999986 3222 11110 011 257
Q ss_pred EEEecCCccCCCC--CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHH-HHHHHHHHH
Q psy13354 222 FITSTTHKSLRGP--RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV-KNAKILSKI 298 (1342)
Q Consensus 222 ivv~S~sK~l~gp--~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~-~~a~~l~~~ 298 (1342)
+++ ++|+++|. +-|++++++++++.+.........+...++..++++.+.++.+.+ +.+.+++. ++.+++++.
T Consensus 287 i~t--~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~--~~~~~~~~~~~~~~l~~~ 362 (472)
T 3hmu_A 287 IMT--IAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE--ENILDHVRNVAAPYLKEK 362 (472)
T ss_dssp EEE--ECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHTHHHHHHHH
T ss_pred eee--echhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHH
Confidence 775 56999542 239999999999988432112111122234444444454544321 23566777 778888888
Q ss_pred HHhC---C-cEEeeCCCCCeEEEEEccCCCC------------CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccc
Q psy13354 299 LDQR---G-IRIVSGGTKSHIILVDLRNKKI------------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLG 362 (1342)
Q Consensus 299 L~~~---g-~~~~~~~~~~~~v~i~~~~~~~------------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~ 362 (1342)
|+++ + +..+. ..+.++++.+..... ...+...+++ +||++.+.. +++|++
T Consensus 363 L~~l~~~~~v~~vr--~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g-----------~~iRi~ 428 (472)
T 3hmu_A 363 WEALTDHPLVGEAK--IVGMMASIALTPNKASRAKFASEPGTIGYICRERCFA-NNLIMRHVG-----------DRMIIS 428 (472)
T ss_dssp HHGGGGSTTEEEEE--EETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHH-TTBCCEEET-----------TEEEEC
T ss_pred HHHHhcCCCeEEEE--ecCceEEEEEecCccccccccchhHHHHHHHHHHHHH-CCcEEEecC-----------CEEEEE
Confidence 8654 2 22222 234566666643210 2345556665 599998751 469998
Q ss_pred ccccccc
Q psy13354 363 SSAITTR 369 (1342)
Q Consensus 363 ~~~~~t~ 369 (1342)
.+...+.
T Consensus 429 p~~~~t~ 435 (472)
T 3hmu_A 429 PPLVITP 435 (472)
T ss_dssp CCTTCCH
T ss_pred CCCCCCH
Confidence 7665553
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-13 Score=167.79 Aligned_cols=311 Identities=15% Similarity=0.062 Sum_probs=176.8
Q ss_pred ceeeeec--CCCC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH
Q psy13354 29 NIELIAS--ENYT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN 102 (1342)
Q Consensus 29 ~i~l~a~--~n~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~ 102 (1342)
.|.+.++ .+.+ +|.+.+|+.+.+.. ....+.... ... +...+++++++++++.+ +.+++++||++|+
T Consensus 52 ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~-~~~~~~~~~--~~~----~~~~~la~~l~~~~~~~~~~v~~~~ggseA~ 124 (459)
T 4a6r_A 52 IIDGMAGLWCVNVGYGRKDFAEAARRQMEE-LPFYNTFFK--TTH----PAVVELSSLLAEVTPAGFDRVFYTNSGSESV 124 (459)
T ss_dssp EEETTHHHHTCTTCBCCHHHHHHHHHHHHH-CSCCCTTSS--SCC----HHHHHHHHHHHHHSCTTCCEEEEESSHHHHH
T ss_pred EEECCCchhcccCCCCCHHHHHHHHHHHHh-ccccccccc--cCC----HHHHHHHHHHHHhCCCCCCEEEEeCchHHHH
Confidence 3555554 3333 57799999988853 221222111 112 44555666899988654 4566666999999
Q ss_pred HHHHHHccC--------CCCEEEEeeccCCccchhhHHhh----------hCCceeEEEEecCC---CCCCCC-------
Q psy13354 103 QAVFFSVLN--------PGDTIMGMSLQEGGHLTHGMMLN----------MSGKWFNSICYGLN---KKEKID------- 154 (1342)
Q Consensus 103 ~~al~al~~--------pGD~Vlv~~~~~~~~~s~~~~~~----------~~g~~~~~v~~~~~---~~~~id------- 154 (1342)
..+++++.. +++.|++....+.++......+. ....++..++++.. .++ +|
T Consensus 125 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~ 203 (459)
T 4a6r_A 125 DTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVV 203 (459)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHH
Confidence 999999865 57889987766655443222211 11123344544331 112 34
Q ss_pred -HHHHHHHHHh---cCCeEEEEcCCCCC--cccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCC--CCC-CC
Q psy13354 155 -YKKVEYLAKK---NKPKLIIAGASAYS--QYID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPN--PVP-FA 220 (1342)
Q Consensus 155 -~e~Le~~i~~---~~~~liv~~~s~~~--~~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~--~l~-~~ 220 (1342)
++++++.+.+ .++++|++.+.+++ ...+ +++|.++|++||++||+||+|. +|.. +.+.. ... ..
T Consensus 204 ~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~--G~~~~~~~~~~~p 281 (459)
T 4a6r_A 204 AARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRT--GEWFGHQHFGFQP 281 (459)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT--SSSSHHHHHTCCC
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc--cccchHhhcCCCC
Confidence 7888888874 34566666553333 1233 9999999999999999999986 2221 21110 011 24
Q ss_pred cEEEecCCccCCCC--CeeEEEEechhHHHHhhc---cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHH-HHHHH
Q psy13354 221 DFITSTTHKSLRGP--RGGFILMKKKYKKIINSA---VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV-KNAKI 294 (1342)
Q Consensus 221 Divv~S~sK~l~gp--~GG~iv~~~~l~~~l~~~---~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~-~~a~~ 294 (1342)
|+++ +||+++++ .-|++++++++++.+... ...+.++. ++..++++.+.++...+ +.+.+++. ++.++
T Consensus 282 di~t--~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~--~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~ 355 (459)
T 4a6r_A 282 DLFT--AAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSG--HPVCAAVAHANVAALRD--EGIVQRVKDDIGPY 355 (459)
T ss_dssp SEEE--ECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCS--CHHHHHHHHHHHHHHHH--TCHHHHHHHTHHHH
T ss_pred Ceee--hhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCC--CHHHHHHHHHHHHHHhc--chHHHHHHHHHHHH
Confidence 7764 56999542 229999999999888732 11222332 23344444444443321 12345555 55566
Q ss_pred HHHHH----HhCC-cEEeeCCCCCeEEEEEccCCCC-----------CHHHHHHHHHHCCceeeeccCCCCCCCcccccc
Q psy13354 295 LSKIL----DQRG-IRIVSGGTKSHIILVDLRNKKI-----------TGKIAESILESANIICNKNSIPNDPEKPYFTSG 358 (1342)
Q Consensus 295 l~~~L----~~~g-~~~~~~~~~~~~v~i~~~~~~~-----------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~ 358 (1342)
+++.| .+.+ +.... ..+.++++.+..... ..++...+++ +||.+.+.. ++
T Consensus 356 ~~~~l~~~l~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g-----------~~ 421 (459)
T 4a6r_A 356 MQKRWRETFSRFEHVDDVR--GVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFR-NNLIMRACG-----------DH 421 (459)
T ss_dssp HHHHHHHHHTTCTTEEEEE--EETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHH-TTEECEEET-----------TE
T ss_pred HHHHHHHHHhcCCCeEEEE--EEEEEEEEEEecCccccccccchHHHHHHHHHHHHH-CCeEEecCC-----------CE
Confidence 66655 3333 22222 234566666653211 2345555665 599998751 46
Q ss_pred ccccccccccc
Q psy13354 359 IRLGSSAITTR 369 (1342)
Q Consensus 359 lRi~~~~~~t~ 369 (1342)
+|++++...+.
T Consensus 422 iRi~~~~~~t~ 432 (459)
T 4a6r_A 422 IVSAPPLVMTR 432 (459)
T ss_dssp EEECCCTTCCH
T ss_pred EEEECCCCCCH
Confidence 99987766554
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-14 Score=173.18 Aligned_cols=304 Identities=13% Similarity=0.063 Sum_probs=169.5
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHcc--CCCCE
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVL--NPGDT 115 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~--~pGD~ 115 (1342)
+|.+.+|+.+.+.. .. .+.... +. .+...+++++++++++.+ +.+++++||++|+..+++.+. ..++.
T Consensus 82 ~p~v~~A~~~~~~~-~~-~~~~~~--~~----~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ 153 (453)
T 4ffc_A 82 HPAVAAAIADQATH-FT-HTCFMV--TP----YEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPA 153 (453)
T ss_dssp CHHHHHHHHHHHHH-CS-CCTTTT--SC----CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCE
T ss_pred CHHHHHHHHHHHHh-cc-ccccCc--CC----CHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCE
Confidence 67799999888853 21 111111 11 244555667899988743 456666699999999997764 24578
Q ss_pred EEEeeccCCccchhhHHhh-----------hCCceeEEEEecCC--CCCCCC--------HHHHHHHHHhcCCeEEEEcC
Q psy13354 116 IMGMSLQEGGHLTHGMMLN-----------MSGKWFNSICYGLN--KKEKID--------YKKVEYLAKKNKPKLIIAGA 174 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~-----------~~g~~~~~v~~~~~--~~~~id--------~e~Le~~i~~~~~~liv~~~ 174 (1342)
|++....+.++......+. ....++..++++.. +.+.++ ++.+++.+...++++|++.+
T Consensus 154 ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep 233 (453)
T 4ffc_A 154 VVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEP 233 (453)
T ss_dssp EEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECS
T ss_pred EEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 8877766655443222211 01113345544421 111122 34555555444556677655
Q ss_pred CCCC--ccc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC-CeeEEEEech
Q psy13354 175 SAYS--QYI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP-RGGFILMKKK 244 (1342)
Q Consensus 175 s~~~--~~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~ 244 (1342)
.+.. ... .+++|+++|++||++||+||+|... ...+.... ... ..|++ +++|+++++ ..|+++++++
T Consensus 234 ~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-g~~g~~~a~~~~~~~pdi~--t~sK~~~~G~~~G~~~~~~~ 310 (453)
T 4ffc_A 234 IQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGF-ARTGAWFASEHEGIVPDIV--TMAKGIAGGMPLSAVTGRAE 310 (453)
T ss_dssp SBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEHH
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCC-CcccccchhhhcCCCcchH--hhhhhhcCCcCeEEEEECHH
Confidence 3332 122 3999999999999999999998621 11111110 011 24665 466999432 2299999999
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CC-cEEeeCCCCCeEEEEE
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RG-IRIVSGGTKSHIILVD 319 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g-~~~~~~~~~~~~v~i~ 319 (1342)
+++.+........+++ ++...+++.+..+...+ +.+.+++.++.+++++.|.+ .+ +.... ..+.++++.
T Consensus 311 i~~~~~~~~~~~t~~~--~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~~~ 384 (453)
T 4ffc_A 311 LMDAVYAGGLGGTYGG--NPVTCAAAVAALGVMRE--LDLPARARAIEASVTSRLSALAEEVDIIGEVR--GRGAMLAIE 384 (453)
T ss_dssp HHTTSCTTSSCCSSSS--CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEE--EETTEEEEE
T ss_pred HHhhhcccCcCCCCCc--CHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE--eeceEEEEE
Confidence 8888765444333333 33333334444443321 23455666666666666654 23 22222 235577777
Q ss_pred ccCC-------CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 320 LRNK-------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 320 ~~~~-------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+... ....++...+++ +||.+.+...+ .+.+|++++..++.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~--------~~~iRi~~~~~~t~ 432 (453)
T 4ffc_A 385 IVKPGTLEPDAALTKSIAAEALS-QGVLILTCGTF--------GNVIRLLPPLVIGD 432 (453)
T ss_dssp EBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECTT--------SCEEEECCCTTCCH
T ss_pred EecCcccCCCHHHHHHHHHHHHh-CCCEEecCCCC--------CCEEEEECCCCCCH
Confidence 6431 112345555555 59999875221 24689987766553
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-14 Score=167.79 Aligned_cols=203 Identities=14% Similarity=0.176 Sum_probs=151.8
Q ss_pred CCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
...+|+|+.|.+.+++.|.+.+.. -..+.++|||||||||||++|+++|+++++
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~-------------- 241 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA-------------- 241 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--------------
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--------------
Confidence 345799999999999999888742 256789999999999999999999999974
Q ss_pred CCCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCC--------------H
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------------H 513 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------------~ 513 (1342)
.++.++++... +...++.++..+... .+-||+|||+|.+. .
T Consensus 242 ---------------~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~----~P~IifiDEiDai~~~R~~~~~~~~~~~~ 302 (437)
T 4b4t_L 242 ---------------NFIFSPASGIVDKYIGESARIIREMFAYAKEH----EPCIIFMDEVDAIGGRRFSEGTSADREIQ 302 (437)
T ss_dssp ---------------EEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHS----CSEEEEEECCCSSSCCCSSSCCSSTTHHH
T ss_pred ---------------CEEEEehhhhccccchHHHHHHHHHHHHHHhc----CCceeeeecccccccccccCCCCcchHHH
Confidence 46666654321 123466666665443 35699999999772 1
Q ss_pred HHHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhcc--E-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 514 HAFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLSR--C-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 514 ~~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~sR--~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
...+.||..++.. ...+++|++||.++.++++|+++ + ..+.|+.|+.++..++++.++++.... ++..++.|++
T Consensus 303 ~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~ 381 (437)
T 4b4t_L 303 RTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVK 381 (437)
T ss_dssp HHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHH
Confidence 1356778877643 35688999999999999999875 5 789999999999999999888765542 2334788999
Q ss_pred hcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 589 GAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
.+.| +-.++.+++..+..++ ...|+.+|+.+++.
T Consensus 382 ~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~ 420 (437)
T 4b4t_L 382 MSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVR 420 (437)
T ss_dssp TCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 8866 6777777777665544 23488888877663
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-14 Score=170.09 Aligned_cols=279 Identities=11% Similarity=0.077 Sum_probs=169.7
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCc-eEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEE
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAA-NVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSIC 144 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~-vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~ 144 (1342)
..+..++..++++++++++|.+.. ++++.+|+.++++++.++ +.+||+|+++...|+++...+. .....|.. ++.
T Consensus 103 ~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~--v~~ 180 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAK--LLT 180 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCE--EEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCE--EEE
Confidence 445567778888899999998833 344436775545554443 5799999988766655443332 23446774 444
Q ss_pred ecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcc-cchhhhhcCCCCCCCC-CCc
Q psy13354 145 YGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMA-HYAGLIAAGEYPNPVP-FAD 221 (1342)
Q Consensus 145 ~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea-~~~g~~~~~~~~~~l~-~~D 221 (1342)
++. +++.+|+++ +++ ++++|+++.+|+. ...|+++|+++|+++|+++++|.. ++.|.+. .+.. .+|
T Consensus 181 v~~-~~~~~d~~~----i~~-~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~-----~~~~~g~D 249 (438)
T 1wyu_A 181 LPL-EGGRTPLPE----VGE-EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLK-----PPGAYGAD 249 (438)
T ss_dssp ECC-BTTBCCCCC----CCT-TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBC-----CHHHHTCS
T ss_pred EcC-cCCccCHHH----hCC-CeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcC-----CCccCCCC
Confidence 454 456778766 443 4566665555444 445999999999999999997754 4444331 1111 369
Q ss_pred EEEecCCc-----cCCCCCeeEEEEechhHHHHhhccCC-----------------------ccccCCcH---HHHHHHH
Q psy13354 222 FITSTTHK-----SLRGPRGGFILMKKKYKKIINSAVFP-----------------------GIQGGPLM---HVIAAKA 270 (1342)
Q Consensus 222 ivv~S~sK-----~l~gp~GG~iv~~~~l~~~l~~~~~~-----------------------~~~~~~~~---~~~~Aaa 270 (1342)
++++|.+| |++||.+|++++++++.+.+...... ...++++. ...+++.
T Consensus 250 ~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~ 329 (438)
T 1wyu_A 250 IAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALM 329 (438)
T ss_dssp EEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHH
T ss_pred EEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHH
Confidence 99999555 56677449999999876654211000 00111111 1222222
Q ss_pred HH--HHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCcee--eecc
Q psy13354 271 VA--FKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIIC--NKNS 345 (1342)
Q Consensus 271 ~a--l~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v--~~~~ 345 (1342)
++ +.....++++++.+++.++++++.+.|.+. |+++..+....+.+.+..+ ....++...+++ +||.+ .+..
T Consensus 330 aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~-~gi~v~~~~~~ 406 (438)
T 1wyu_A 330 GAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP--KDPEAVRRALAE-RGFHGATPVPR 406 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS--SCHHHHHHHHHH-TTCCCCEECCT
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCC--CCHHHHHHHHHH-CCceecccccc
Confidence 22 333333467788899999999999999997 8988542211223334433 234466666665 59998 4332
Q ss_pred CCCCCCCccccccccccccccccc
Q psy13354 346 IPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 346 ~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+. .+++|++++..++.
T Consensus 407 ~~~-------~~~lRis~~~~~t~ 423 (438)
T 1wyu_A 407 EYG-------ENLALFAATELHEE 423 (438)
T ss_dssp TSC-------SSEEEEECCTTCCH
T ss_pred ccC-------CCeEEEEecccCCH
Confidence 211 35799999976654
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-14 Score=166.24 Aligned_cols=202 Identities=16% Similarity=0.200 Sum_probs=150.8
Q ss_pred CCCccccccchhhHHHHHHHHHc-----------C-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALDK-----------K-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~~-----------~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
..+|+|+.|.+.+++.|++.+.. | ..+.++|||||||||||++|+++|+++++
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~--------------- 269 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA--------------- 269 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC---------------
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC---------------
Confidence 35899999999999999887631 3 57789999999999999999999999974
Q ss_pred CCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------H
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------------H 514 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------------~ 514 (1342)
.|+.++++... +...+++++..+... .+-||+|||+|.+.. .
T Consensus 270 --------------~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~ 331 (467)
T 4b4t_H 270 --------------TFIRVIGSELVQKYVGEGARMVRELFEMARTK----KACIIFFDEIDAVGGARFDDGAGGDNEVQR 331 (467)
T ss_dssp --------------EEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHT----CSEEEEEECCTTTSBCCSSSSCGGGGHHHH
T ss_pred --------------CeEEEEhHHhhcccCCHHHHHHHHHHHHHHhc----CCceEeecccccccccccCcCCCccHHHHH
Confidence 46666554221 224577777766543 345999999997731 1
Q ss_pred HHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh
Q psy13354 515 AFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG 589 (1342)
Q Consensus 515 ~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~ 589 (1342)
..+.|+..++. ....+++|++||.++.+++++++ |+ ..+.|+.|+.++..++++.++++..+. ++..++.|++.
T Consensus 332 ~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~ 410 (467)
T 4b4t_H 332 TMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRL 410 (467)
T ss_dssp HHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHH
T ss_pred HHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHH
Confidence 34566666653 34578899999999999999987 88 899999999999999998888765443 12247888998
Q ss_pred cCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 590 AQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 590 ~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
+.| +-.++.+++..+...+ ...||.+|+.+++.
T Consensus 411 T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~ 448 (467)
T 4b4t_H 411 CPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVD 448 (467)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 865 6677777777665543 23488888776663
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=164.49 Aligned_cols=325 Identities=11% Similarity=0.022 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHhccCceeeeec-------CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh
Q psy13354 14 KIWEIILKEKQRQNNNIELIAS-------ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF 86 (1342)
Q Consensus 14 ~~~~~~~~~~~~~~~~i~l~a~-------~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~ 86 (1342)
.+.+.........+.+++|..| ..+..|.|.+|....+.+.. ...|.+..+..++.+++.+.+....
T Consensus 31 ~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~------~~~Y~p~~G~p~lr~aia~~~~g~~ 104 (420)
T 4h51_A 31 VIFDLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNL------DYEYLPISGYQPFIDEAVKIIYGNT 104 (420)
T ss_dssp HHHHHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTC------CCCCCCTTCCHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCC------CCCCCCcCChHHHHHHHHHHhcCCC
Confidence 3444443333333456888766 23445668888655553222 2235666677789887766542211
Q ss_pred CCC-C-ceEecCCHHHHHHHHHHH----ccCCCCEEEEeeccCCccchhhHHhhhCCce-eEEEEecCCCCCCCCHHHHH
Q psy13354 87 NAE-A-ANVQPHSGSQANQAVFFS----VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKW-FNSICYGLNKKEKIDYKKVE 159 (1342)
Q Consensus 87 g~~-~-~vi~~~sGs~A~~~al~a----l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~-~~~v~~~~~~~~~id~e~Le 159 (1342)
... . ..+.+.+||.|+..++.. +.+|||+|+++++.++.| ...+...|.. +...++..++++.+|.+.+.
T Consensus 105 ~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y---~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~ 181 (420)
T 4h51_A 105 VELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNH---YGVVKAAGWKNICTYAYYDPKTVSLNFEGMK 181 (420)
T ss_dssp -CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHH---HHHHHHTTCCCEEEEECEEGGGTEECHHHHH
T ss_pred ccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhH---HHHHHHcCCeEEEeeccccccccCCCHHHHH
Confidence 111 1 223244888877666544 457999999888666544 4455666653 33333333356678999888
Q ss_pred HHHHhcC--CeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC-C------CCCCcEEEe
Q psy13354 160 YLAKKNK--PKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN-P------VPFADFITS 225 (1342)
Q Consensus 160 ~~i~~~~--~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~-~------l~~~Divv~ 225 (1342)
+.+...+ ..+++.+.++|| +...+++|+++|+++++++++|++|....++...... . ....-+++.
T Consensus 182 ~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 261 (420)
T 4h51_A 182 KDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQ 261 (420)
T ss_dssp HHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEE
T ss_pred HHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEe
Confidence 8776543 345555556666 3337999999999999999999998643332110000 0 011247889
Q ss_pred cCCccCCCCCe---eEEEEechhHHHHhhc------cCCccccCCcHHHHHHHHHHHHH-----hccchHHHHHHHHHHH
Q psy13354 226 TTHKSLRGPRG---GFILMKKKYKKIINSA------VFPGIQGGPLMHVIAAKAVAFKE-----VLKPDFKIYQKQVVKN 291 (1342)
Q Consensus 226 S~sK~l~gp~G---G~iv~~~~l~~~l~~~------~~~~~~~~~~~~~~~Aaa~al~~-----~l~~~~~~~~~~l~~~ 291 (1342)
||||+| +++| ||++++....+..... .....+++++...+.+++..+.+ .....++.+++++.++
T Consensus 262 s~SK~~-~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~ 340 (420)
T 4h51_A 262 SFSKNM-GLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTM 340 (420)
T ss_dssp ECTTTS-CCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-ccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 8888 9999876544332210 11223344445555444433321 1223566788899999
Q ss_pred HHHHHHHHHhCCcEEee---CCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 292 AKILSKILDQRGIRIVS---GGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 292 a~~l~~~L~~~g~~~~~---~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++.+.+.|++.|..... .+..+.|.|+. .+.+.++ +|+++||++.+. -|++++..++
T Consensus 341 R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~g-----ls~e~v~-~L~e~~Vy~~~~--------------gRis~Agl~~ 400 (420)
T 4h51_A 341 RRTVYDELLRLQTPGSWEHVINQIGMFSFLG-----LSKAQCE-YCQNHNIFITVS--------------GRANMAGLTH 400 (420)
T ss_dssp HHHHHHHHHHTTCSSCCTHHHHCCSSEEECC-----CCHHHHH-HHHHTTEECCTT--------------CEEEGGGCCH
T ss_pred HHHHHHHHHHhCCCCCCCeecCCCceEEecC-----cCHHHHH-HHHhCCEEEcCC--------------CEEEeccCCH
Confidence 99999999987633110 12446666643 3445554 556789987631 2888876544
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-13 Score=166.79 Aligned_cols=311 Identities=14% Similarity=0.042 Sum_probs=181.6
Q ss_pred ceeeeec--CCC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH
Q psy13354 29 NIELIAS--ENY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN 102 (1342)
Q Consensus 29 ~i~l~a~--~n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~ 102 (1342)
.|.+.++ .+. .+|.+.+|+.+.+. .+..++.. .... +...+++++++++++.+ +.+++++||++|+
T Consensus 56 ylD~~s~~~~~~lGh~~p~v~~A~~~~l~-~~~~~~~~---~~~~----~~~~~la~~l~~~~~~~~~~v~~~~sGseA~ 127 (476)
T 3i5t_A 56 LIDGPAGMWCAQVGYGRREIVDAMAHQAM-VLPYASPW---YMAT----SPAARLAEKIATLTPGDLNRIFFTTGGSTAV 127 (476)
T ss_dssp EEETTHHHHTCTTCBCCHHHHHHHHHHHH-HCCCCCTT---TCBC----HHHHHHHHHHHTTSSTTCCEEEEESSHHHHH
T ss_pred EEECCCchhhccCCCCCHHHHHHHHHHHH-hccCcccC---ccCC----HHHHHHHHHHHhcCCCCcCEEEEeCchHHHH
Confidence 4555444 233 36789999998885 33222221 1112 44555666999988643 4556666999999
Q ss_pred HHHHHHccC--------CCCEEEEeeccCCccchhhHHhh----------hCCceeEEEEecCCCC-CCCC--------H
Q psy13354 103 QAVFFSVLN--------PGDTIMGMSLQEGGHLTHGMMLN----------MSGKWFNSICYGLNKK-EKID--------Y 155 (1342)
Q Consensus 103 ~~al~al~~--------pGD~Vlv~~~~~~~~~s~~~~~~----------~~g~~~~~v~~~~~~~-~~id--------~ 155 (1342)
..+++++.. .++.|++....+.++......+. ....++..++.+.... +..| +
T Consensus 128 ~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 207 (476)
T 3i5t_A 128 DSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLV 207 (476)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHH
Confidence 999998853 35688877766655432221110 0112234444333211 1112 7
Q ss_pred HHHHHHHHh---cCCeEEEEcCCCCC-c-cc----CHHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCC--C-CCC-CCc
Q psy13354 156 KKVEYLAKK---NKPKLIIAGASAYS-Q-YI----DFERFYHIAKNINSYFMVDMAHY-AGLIAAGEYP--N-PVP-FAD 221 (1342)
Q Consensus 156 e~Le~~i~~---~~~~liv~~~s~~~-~-~~----~l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~--~-~l~-~~D 221 (1342)
+++++.+.+ .+.++|++.+.+.+ + .. .+++|+++|++||++||+||+|. +|.. +... . ... .+|
T Consensus 208 ~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~--G~~~~~~~~~~v~pd 285 (476)
T 3i5t_A 208 QEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRC--GEWFASEKVFGVVPD 285 (476)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT--SSSCHHHHTTCCCCS
T ss_pred HHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccc--cCceeeecccCCCcc
Confidence 888888874 34567777654433 1 22 39999999999999999999986 2222 2111 0 111 257
Q ss_pred EEEecCCccCCCC--CeeEEEEechhHHHHhhc-------cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGP--RGGFILMKKKYKKIINSA-------VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNA 292 (1342)
Q Consensus 222 ivv~S~sK~l~gp--~GG~iv~~~~l~~~l~~~-------~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a 292 (1342)
+++ ++|+++++ +-|++++++++++.+... ...+.+++ ++..++++.+.++.+.+ +.+.+++.++.
T Consensus 286 i~t--~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~--np~a~aAa~aaL~~~~~--~~~~~~~~~~~ 359 (476)
T 3i5t_A 286 IIT--FAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSN--QPVACAAALANIELMER--EGIVDQAREMA 359 (476)
T ss_dssp EEE--ECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTT--CHHHHHHHHHHHHHHHH--TTHHHHHHHHH
T ss_pred hhh--hhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCc--CHHHHHHHHHHHHHHHh--HHHHHHHHHHH
Confidence 775 56999552 228999999998888653 22223332 34444455555554321 34567788888
Q ss_pred HHHHHHHHhCC----cEEeeCCCCCeEEEEEccCCCC-----------CHHHHHHHHHHCCceeeeccCCCCCCCccccc
Q psy13354 293 KILSKILDQRG----IRIVSGGTKSHIILVDLRNKKI-----------TGKIAESILESANIICNKNSIPNDPEKPYFTS 357 (1342)
Q Consensus 293 ~~l~~~L~~~g----~~~~~~~~~~~~v~i~~~~~~~-----------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~ 357 (1342)
+++.+.|.+++ +..+. ..+.++++.+..... ...+...+++ +||++.+. .+
T Consensus 360 ~~l~~~L~~l~~~~~v~~v~--~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~-----------g~ 425 (476)
T 3i5t_A 360 DYFAAALASLRDLPGVAETR--SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFE-LGLIVRPL-----------GD 425 (476)
T ss_dssp HHHHHHHHTTTTSTTEEEEE--EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHH-TTEECEEE-----------TT
T ss_pred HHHHHHHHHHhcCCCeEEEE--ecCceeEEEEecCccccccccchhHHHHHHHHHHHH-CCCEEEec-----------CC
Confidence 88888887642 22222 234466777654321 2345555665 59999863 14
Q ss_pred cccccccccccc
Q psy13354 358 GIRLGSSAITTR 369 (1342)
Q Consensus 358 ~lRi~~~~~~t~ 369 (1342)
++|++.+...+.
T Consensus 426 ~iRi~p~l~~t~ 437 (476)
T 3i5t_A 426 LCVISPPLIISR 437 (476)
T ss_dssp EEEECCCTTCCH
T ss_pred EEEEECCCCCCH
Confidence 699986665553
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=172.87 Aligned_cols=212 Identities=14% Similarity=0.207 Sum_probs=153.5
Q ss_pred cCCC-Cccccc-cc--hhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchh
Q psy13354 385 YRPS-NFNTLI-GQ--NHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460 (1342)
Q Consensus 385 ~~p~-~f~~lv-Gq--~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~ 460 (1342)
..|. +|++++ |+ ..+...+.........++.++||||+|+|||++++++++.+....+.
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~----------------- 160 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPD----------------- 160 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCS-----------------
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCC-----------------
Confidence 3343 789987 64 34455566665553325679999999999999999999998532111
Q ss_pred hhccCCCccEEEEccCCCcCHHHHHHHHHHHhhc------CccC-CceEEEeccCccCCH--HHHHHHHHhhcCC-CCcE
Q psy13354 461 KIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYA------PINA-RYKIYVIDEVHMLTH--HAFNAMLKTLEEP-PKYI 530 (1342)
Q Consensus 461 ~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~------p~~~-~~rvviIDE~~~L~~--~~~~~Ll~~Le~p-~~~~ 530 (1342)
..++.+++... ..++....... .... ...+++|||++.+.. ..++.|+.+++.. ....
T Consensus 161 -------~~v~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~ 228 (440)
T 2z4s_A 161 -------LRVMYITSEKF-----LNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGK 228 (440)
T ss_dssp -------SCEEEEEHHHH-----HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTC
T ss_pred -------CeEEEeeHHHH-----HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCC
Confidence 12444443321 11222211111 0112 567999999999875 5677788877542 2234
Q ss_pred EEEEEeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHH
Q psy13354 531 KFILATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQ 603 (1342)
Q Consensus 531 vlIl~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~k 603 (1342)
.+|++++.+. .+.++|.+|+ .++.+.+|+.+++..++...+...++.++++++++|++.++||+|.+.+.|++
T Consensus 229 ~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~ 308 (440)
T 2z4s_A 229 QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIK 308 (440)
T ss_dssp EEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5666776643 3678999998 68999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc---CCCCCHHHHHHHhccCc
Q psy13354 604 AINYS---SEKITLNSMQEMLSIID 625 (1342)
Q Consensus 604 l~~~~---~~~It~e~V~~~v~~~~ 625 (1342)
+..++ +..||.+++++++....
T Consensus 309 ~~~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 309 LLVYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 88776 45699999999997654
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.6e-14 Score=169.80 Aligned_cols=304 Identities=13% Similarity=0.082 Sum_probs=168.8
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHccC--CCCE
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVLN--PGDT 115 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~~--pGD~ 115 (1342)
+|.+.+|+.+.+.. .. .+... .+. .+...+++++++++++.. +.+++++||++|+..+++.+.. .++.
T Consensus 79 ~p~v~~A~~~~~~~-~~-~~~~~--~~~----~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ 150 (451)
T 3oks_A 79 APKVVEAVRSQVGD-FT-HTCFM--VTP----YEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPA 150 (451)
T ss_dssp CHHHHHHHHHHHTT-CS-CCTTT--TSC----CHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCE
T ss_pred CHHHHHHHHHHHHh-cc-cccCC--ccC----CHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCe
Confidence 67799998888742 21 11111 111 244555667899988633 4566666999999999987753 4478
Q ss_pred EEEeeccCCccchhhHHhh-----------hCCceeEEEEecCC--C-------C--CCCCHHHHHHHHHh----cCCeE
Q psy13354 116 IMGMSLQEGGHLTHGMMLN-----------MSGKWFNSICYGLN--K-------K--EKIDYKKVEYLAKK----NKPKL 169 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~-----------~~g~~~~~v~~~~~--~-------~--~~id~e~Le~~i~~----~~~~l 169 (1342)
|++....+.++......+. ....++..++++.. . + ...+++.+++.+.+ .++++
T Consensus 151 ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aa 230 (451)
T 3oks_A 151 VVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAA 230 (451)
T ss_dssp EEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEE
T ss_pred EEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEE
Confidence 8877766655443322211 01123345544311 0 0 00124444455442 44566
Q ss_pred EEEcCCCCC--cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC-CeeEE
Q psy13354 170 IIAGASAYS--QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP-RGGFI 239 (1342)
Q Consensus 170 iv~~~s~~~--~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp-~GG~i 239 (1342)
|++.+.+.. ...+ +++|+++|++||++||+||+|.. +...+... .... ..|++ |+||+++++ ..|++
T Consensus 231 vi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g-~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~iG~v 307 (451)
T 3oks_A 231 VVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTG-FARTGAMFACEHEGIDPDLI--VTAKGIAGGLPLSAV 307 (451)
T ss_dssp EEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTT-TTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCEEE
T ss_pred EEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccC-CCccccchhhhhcCCCCCee--eehhhhhCCcceEEE
Confidence 776553332 1222 99999999999999999999862 21112111 1111 24766 667999442 22999
Q ss_pred EEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----C-cEEeeCCCCCe
Q psy13354 240 LMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----G-IRIVSGGTKSH 314 (1342)
Q Consensus 240 v~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g-~~~~~~~~~~~ 314 (1342)
++++++++.+........+++ ++...+++.+..+.+.+ +.+.+++.++.+++++.|.+. + +.... ..+.
T Consensus 308 ~~~~~~~~~~~~~~~~~t~~~--~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~G~ 381 (451)
T 3oks_A 308 TGRAEIMDSPHVSGLGGTYGG--NPIACAAALATIETIES--EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVR--GRGA 381 (451)
T ss_dssp EEEHHHHTCSCTTSBCCSSSS--CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EETT
T ss_pred EECHHHHhhhcCCCcCCCCCC--CHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE--EeeE
Confidence 999998887765443333333 33334344444443321 134566666667777666552 3 22222 2345
Q ss_pred EEEEEccCC-------CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 315 IILVDLRNK-------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 315 ~v~i~~~~~-------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++++.+... ....++...+++ +||.+.+...+ ...+|++++..++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~--------~~~iRi~~~~~~t~ 434 (451)
T 3oks_A 382 MIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLSCGTY--------GNVVRFLPPLSIGD 434 (451)
T ss_dssp EEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT--------SCEEEECCCTTCCH
T ss_pred EEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEecCCCC--------CCEEEEECCCCCCH
Confidence 777776431 112345555555 59999875221 24689987766553
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=164.36 Aligned_cols=202 Identities=15% Similarity=0.192 Sum_probs=151.2
Q ss_pred CCCccccccchhhHHHHHHHHH------------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALD------------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~------------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
..+|+|+.|.+.+++.|.+.+. .-..+.++|||||||||||++|+++|+++++
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~--------------- 232 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA--------------- 232 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC---------------
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------
Confidence 3589999999999999988874 2256788999999999999999999999974
Q ss_pred CCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCC--------------HH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------------HH 514 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------------~~ 514 (1342)
.++.++++... +...+++++..+... .+.|+++||+|.+. ..
T Consensus 233 --------------~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~----aP~IifiDEiD~i~~~R~~~~~~~~~~~~r 294 (428)
T 4b4t_K 233 --------------AFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN----APSIIFIDEVDSIATKRFDAQTGSDREVQR 294 (428)
T ss_dssp --------------EEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHT----CSEEEEEECTHHHHCSCSSSCSCCCCHHHH
T ss_pred --------------CeEEEecchhhccccchhHHHHHHHHHHHHHc----CCCeeechhhhhhhccccCCCCCCChHHHH
Confidence 46666654321 234577777766543 34699999999651 12
Q ss_pred HHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEc-CCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 515 AFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLK-KMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 515 ~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~-~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
..+.|+..++. ....+++|++||.++.+++++++ |+ ..++|+ .|+.++...+++.++++..+. ++..++.|++
T Consensus 295 ~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~ 373 (428)
T 4b4t_K 295 ILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLII 373 (428)
T ss_dssp HHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHH
T ss_pred HHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHH
Confidence 35677777773 45678899999999999999997 77 578895 688899999998888765542 2234788898
Q ss_pred hcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 589 GAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
.+.| +-.++.+++..+...+ ...|+.+|+.+++.
T Consensus 374 ~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~ 412 (428)
T 4b4t_K 374 RNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYA 412 (428)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 8765 6777777777765544 23488888887764
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-13 Score=164.36 Aligned_cols=242 Identities=17% Similarity=0.163 Sum_probs=160.5
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-H-hhhCCceeEEEEecCCCCCCC
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-M-LNMSGKWFNSICYGLNKKEKI 153 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~-~~~~g~~~~~v~~~~~~~~~i 153 (1342)
.++++.++++.|.+.+++++ ||++|+.. +.+++++||+|++....|++...... . ....|. .++.++.+
T Consensus 70 ~~l~~~la~l~g~~~~~~~~-sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~--~~~~v~~~----- 140 (400)
T 3nmy_A 70 FAYERCVAALEGGTRAFAFA-SGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGL--DFSFVDLT----- 140 (400)
T ss_dssp HHHHHHHHHHHTCSEEEEES-SHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCC--EEEEECTT-----
T ss_pred HHHHHHHHHHhCCCCEEEec-CHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCe--EEEEECCC-----
Confidence 33444899999988777777 99999998 56788999999988866654433322 2 334466 45555654
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCcc
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKS 230 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~ 230 (1342)
|++++++++++ ++++|++.+++++ ...++++|+++|++||+++|+|++|+.+.... ++. .+|++++|++|+
T Consensus 141 d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~-----~~~~g~div~~S~sK~ 214 (400)
T 3nmy_A 141 DPAAFKAAIRA-DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQR-----PLSLGADLVVHSATKY 214 (400)
T ss_dssp SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC-----GGGGTCSEEEEETTTT
T ss_pred CHHHHHHHhcc-CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCC-----hhhcCCcEEEecCccc
Confidence 89999998875 4566666665555 44599999999999999999999998665421 222 379999999999
Q ss_pred CCCC---Cee-EEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-c
Q psy13354 231 LRGP---RGG-FILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-I 304 (1342)
Q Consensus 231 l~gp---~GG-~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~ 304 (1342)
++|+ .|| +++. ++++.+.+...... .+...++..+++.... ++ .+..+.++..+++..+.+.|++.. +
T Consensus 215 l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~--~g~~~~~~~a~~~l~~---l~-~l~~r~~~~~~~a~~l~~~L~~~p~v 288 (400)
T 3nmy_A 215 LNGHSDMVGGIAVVGDNAELAEQMAFLQNS--IGGVQGPFDSFLALRG---LK-TLPLRMRAHCENALALAQWLETHPAI 288 (400)
T ss_dssp TTCSSSCCCEEEEECSCHHHHHHHHHHHHH--HCCBCCHHHHHHHHHH---HT-THHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred cCCCCCcceeEEEEeCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHh---Hh-HHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 9655 347 5554 55677776653222 2233344444333222 22 455667888999999999998753 4
Q ss_pred EEeeCC----------------CCCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 305 RIVSGG----------------TKSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 305 ~~~~~~----------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
..+..| ..+.++++.++.. .+....+++...+..
T Consensus 289 ~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~---~~~~~~~~~~l~~~~ 338 (400)
T 3nmy_A 289 EKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGG---FDAAKRFCEKTELFT 338 (400)
T ss_dssp EEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH---HHHHHHHHHHCSSSE
T ss_pred eEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCc---HHHHHHHHHcCCcce
Confidence 332211 1246888888642 245566666644433
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-13 Score=163.52 Aligned_cols=302 Identities=12% Similarity=0.033 Sum_probs=167.0
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHccC----CC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLN----PG 113 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~~----pG 113 (1342)
.+|.+.+|+.+.+. .... +.. ..... +...+++++++++++.. +.+++++||++|+..+++++.. +|
T Consensus 61 ~~p~v~~A~~~~~~-~~~~-~~~--~~~~~----~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G 132 (448)
T 3dod_A 61 RKKELDDAIKKQLG-KIAH-STL--LGMTN----VPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIG 132 (448)
T ss_dssp SCHHHHHHHHHHHT-TCSC-CCC--SSSEE----HHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHH-hccC-ccc--cccCC----HHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhC
Confidence 36779999888874 2211 111 11112 34455666899888644 4555666999999999998865 45
Q ss_pred ----CEEEEeeccCCccchhhHHhhhC-----C---ceeEEEEecCCCCCCC-----------CHHHHHHHHH--hcCCe
Q psy13354 114 ----DTIMGMSLQEGGHLTHGMMLNMS-----G---KWFNSICYGLNKKEKI-----------DYKKVEYLAK--KNKPK 168 (1342)
Q Consensus 114 ----D~Vlv~~~~~~~~~s~~~~~~~~-----g---~~~~~v~~~~~~~~~i-----------d~e~Le~~i~--~~~~~ 168 (1342)
|+|++....+.++......+... + .......++....+.. |++++++++. ..+++
T Consensus 133 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 212 (448)
T 3dod_A 133 KPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIA 212 (448)
T ss_dssp CTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEE
Confidence 99998776654432211111000 0 0011122233222222 4888999887 33456
Q ss_pred EEEEcCCC-CC-c-ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCC--CCCC-CCcEEEecCCccCCCC--C
Q psy13354 169 LIIAGASA-YS-Q-YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYP--NPVP-FADFITSTTHKSLRGP--R 235 (1342)
Q Consensus 169 liv~~~s~-~~-~-~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp--~ 235 (1342)
+|++.+.+ ++ + ..+ +++|+++|++||++||+||+|. +|.. +... .... ..|++ ++||+++++ .
T Consensus 213 ~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~--g~~~a~~~~~~~~di~--t~sK~l~~G~~~ 288 (448)
T 3dod_A 213 ALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRT--GKMFACEHENVQPDLM--AAGKGITGGYLP 288 (448)
T ss_dssp EEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT--SSSSGGGGGTCCCSEE--EECGGGGTTSSC
T ss_pred EEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcc--cchhhhhhcCCCCCEE--EecccccCCcCc
Confidence 67765543 33 2 222 9999999999999999999987 2211 1111 1111 14666 466999543 3
Q ss_pred eeEEEEechhHHHHhh-------ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh---CCcE
Q psy13354 236 GGFILMKKKYKKIINS-------AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ---RGIR 305 (1342)
Q Consensus 236 GG~iv~~~~l~~~l~~-------~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~---~g~~ 305 (1342)
.|++++++++++.+.. ....+.++. ++..++++.+..+.+.+ +.+.+++.++.+++++.|.+ .+..
T Consensus 289 ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~ 364 (448)
T 3dod_A 289 IAVTFATEDIYKAFYDDYENLKTFFHGHSYTG--NQLGCAVALENLALFES--ENIVEQVAEKSKKLHFLLQDLHALPHV 364 (448)
T ss_dssp CEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTT--CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred eEEEEECHHHHHHhhhccccCCcccccCCCCc--CHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 3999999999888765 222222222 33444444444443321 23455666666666666655 2221
Q ss_pred EeeCCCCCeEEEEEccCCCC-----------CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 306 IVSGGTKSHIILVDLRNKKI-----------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 306 ~~~~~~~~~~v~i~~~~~~~-----------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
... ...+.++|+.+..... ..++...++++ ||.+.+. .+++|++++..++.
T Consensus 365 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~-----------~~~iRi~~~~~~t~ 426 (448)
T 3dod_A 365 GDI-RQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL-GMLTRPL-----------GDVIAFLPPLASTA 426 (448)
T ss_dssp EEE-EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECCEE-----------TTEEEECCCTTCCH
T ss_pred EEE-EeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC-CcEEecc-----------CCEEEEECCCCCCH
Confidence 111 1235577887765322 14566666665 9999864 14699987765553
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=176.47 Aligned_cols=300 Identities=12% Similarity=0.016 Sum_probs=189.7
Q ss_pred CceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcc-h---HHHHHHHHHHHHHHHhC--CC-CceEecCCH
Q psy13354 28 NNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCK-F---IDLIEKIAINRLKKIFN--AE-AANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~-~---~~~Le~~~~~~la~~~g--~~-~~vi~~~sG 98 (1342)
..+.+..+++.++++ +.+++.+.+.. . +.. ...|.... + ..++++++++++....+ .+ +.+++++|+
T Consensus 57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~-~--~~~-~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~ 132 (427)
T 2hox_A 57 CSADVASGDGLFLEEYWKQHKEASAVLV-S--PWH-RMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGV 132 (427)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEE-C--TTT-TCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHH
T ss_pred ceEEecCcCCCCCCCHHHHHhHHhhhhc-C--Ccc-cccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCH
Confidence 447777777665543 55555544421 1 110 00132222 3 56888877777765433 22 455666588
Q ss_pred HHHHHHHHHHc--------cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEE
Q psy13354 99 SQANQAVFFSV--------LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLI 170 (1342)
Q Consensus 99 s~A~~~al~al--------~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~li 170 (1342)
++|+..++.++ ++|||+|++..+.|+ .....+...|..+.. +.+|++.+++.+++ +++++
T Consensus 133 ~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~---~~~~~~~~~g~~~~~--------~~~d~~~l~~~~~~-~~k~v 200 (427)
T 2hox_A 133 TQLIHGLVISLSPNMTATPDAPESKVVAHAPFYP---VFREQTKYFDKKGYV--------WAGNAANYVNVSNP-EQYIE 200 (427)
T ss_dssp HHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCH---HHHHHHHHSCBTTEE--------EEEEGGGGTTCSCG-GGEEE
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEeCCCcc---cHHHHHHHcCCeeee--------ecCCHHHHHHhhcC-CceEE
Confidence 88999999999 899999997775554 444445566654332 23466777766654 45666
Q ss_pred EEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---CCCcEEEecCCccCCCCCe---eEEEEe
Q psy13354 171 IAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---PFADFITSTTHKSLRGPRG---GFILMK 242 (1342)
Q Consensus 171 v~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---~~~Divv~S~sK~l~gp~G---G~iv~~ 242 (1342)
++++++|| ...+ + +++ ++.++.|+++.. . +.+.. ...+++++||||.+ |+.| ||++++
T Consensus 201 ~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~----~--~~s~~~~~~~~~i~~~S~SK~~-g~~G~RiG~~~~~ 266 (427)
T 2hox_A 201 MVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYW----P--HYTPIKYKADEDILLFTMSKFT-GHSGSRFGWALIK 266 (427)
T ss_dssp EEESSCTTTCCCCC-C----SST--TCEEEEECTTCS----T--TTSCCCSCBCCSEEEEEHHHHT-SCGGGCCEEEEEC
T ss_pred EEcCCCCCcccccH-H----HHc--CCCEEEeecccC----C--CCCccccCCCceEEEEeChhcC-CCCCceEEEEEEC
Confidence 66666666 2335 2 233 567888987632 1 11111 23589999999999 6666 999994
Q ss_pred -chhHHHHhhccCCccccCCcHHHHHHHHHHHHHh----------ccchHHHHHHHHHHHHHHHHHHHHhC-CcEE--e-
Q psy13354 243 -KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV----------LKPDFKIYQKQVVKNAKILSKILDQR-GIRI--V- 307 (1342)
Q Consensus 243 -~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~----------l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~--~- 307 (1342)
+++++.+......... +.+.+.+.++..++... ...+++..++++.++++++.+.|++. |+.+ .
T Consensus 267 ~~~l~~~l~~~~~~~~~-~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 345 (427)
T 2hox_A 267 DESVYNNLLNYMTKNTE-GTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELP 345 (427)
T ss_dssp CHHHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCC
T ss_pred CHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccc
Confidence 7888887764332222 34455555555555432 13356677889999999999999986 6654 1
Q ss_pred ----------eCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 308 ----------SGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 308 ----------~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
..+.+++++|++++. .+.+++..+++++||.+.++..++. . .+++|++++.
T Consensus 346 ~~~~~~~~~~~~p~~g~f~~~~~~~--~~~~~~~~ll~~~gI~v~pg~~f~~-~----~~~~Ris~~~ 406 (427)
T 2hox_A 346 QSEYCNYFRRMRPPSPSYAWVKCEW--EEDKDCYQTFQNGRINTQNGVGFEA-S----SRYVRLSLIK 406 (427)
T ss_dssp SCEEETTTTEEECCCCSEEEEEECS--GGGCSHHHHHHHTTEECEEGGGGTS-C----TTEEEEECSS
T ss_pred cccccccccccCCCCceEEEEECCC--cHHHHHHHHHHHCCEEEcCCCccCC-C----CCEEEEEecC
Confidence 123457899999875 2345778888778999998765543 1 4679999984
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.53 E-value=8.1e-14 Score=164.00 Aligned_cols=242 Identities=15% Similarity=0.150 Sum_probs=158.0
Q ss_pred cCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCC---CCCCCCcccCCCCCCcchhh
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIG---IDGNGGITSQPCGKCSVCVK 461 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~---~~~~~~~~~~~c~~~~~~~~ 461 (1342)
-+|.+|++++|++.+++.+..++..+...+ +||+||+|||||++|+.+++.+.... ..........+|..|..|..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~-vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDPGIGG-VLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS 96 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCGGGCC-EEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC
T ss_pred CCCCCchhccChHHHHHHHHHHhhCCCCce-EEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhc
Confidence 357789999999998887766665444444 89999999999999999999886210 00011223334555666653
Q ss_pred hccCCC-ccEEEEccCCCc----CHHHHHHHHHHHhhcC-----ccCCceEEEeccCccCCHHHHHHHHHhhcCC-----
Q psy13354 462 IDNGCF-MDYIEMDAASTR----GINEMAQLLEQTIYAP-----INARYKIYVIDEVHMLTHHAFNAMLKTLEEP----- 526 (1342)
Q Consensus 462 ~~~~~~-~d~~~i~~~~~~----~~~~i~~ii~~~~~~p-----~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p----- 526 (1342)
+....+ ..++.+...... +..++...+....... ..+...+++|||++.++.+.++.|++.+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~ 176 (350)
T 1g8p_A 97 TNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVE 176 (350)
T ss_dssp CCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEEC
T ss_pred cccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEEE
Confidence 332211 223333222110 0001122111111100 0123569999999999999999999998863
Q ss_pred --------CCcEEEEEEeCCCC-CChHHHhccE-EEEEEcCCC-HHHHHHHHHHH-------------------------
Q psy13354 527 --------PKYIKFILATTEPQ-KIPITVLSRC-IQFNLKKML-HHDIVNNLCYI------------------------- 570 (1342)
Q Consensus 527 --------~~~~vlIl~t~~~~-kl~~~L~sR~-~~i~~~~l~-~~el~~~l~~~------------------------- 570 (1342)
+..+++|.++|..+ .+.++|.+|+ ..+.+.+++ .++...++..+
T Consensus 177 ~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i 256 (350)
T 1g8p_A 177 RDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQI 256 (350)
T ss_dssp CTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHH
Confidence 24677888887644 7889999999 559999995 44444555442
Q ss_pred ----HHhcCCCcchhHHHHHHHhcCC----cHHHHHHHHHHHHhhc---C-CCCCHHHHHHHhccCcHH
Q psy13354 571 ----LNKENIKFETSALNLIATGAQG----SMRDALSLTDQAINYS---S-EKITLNSMQEMLSIIDQK 627 (1342)
Q Consensus 571 ----~~~~g~~i~~~al~~La~~~~g----~lr~a~~~L~kl~~~~---~-~~It~e~V~~~v~~~~~~ 627 (1342)
....++.++++++++|++.+.+ ++|.+.+.++.+..++ + ..|+.++|.+++......
T Consensus 257 ~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 257 LEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp HHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGG
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhh
Confidence 2234668999999999998766 8999999999876654 3 349999999877554333
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-14 Score=168.59 Aligned_cols=243 Identities=17% Similarity=0.173 Sum_probs=156.3
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe-cCCCCCCC
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY-GLNKKEKI 153 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~-~~~~~~~i 153 (1342)
..+++.+++++|.+.+++++ +|++|+..++.+++.+||+|+++...|++....+. .....|. +++.+ +.+
T Consensus 61 ~~l~~~la~~~g~~~~v~~~-sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~----- 132 (421)
T 2ctz_A 61 DVLEKRLAALEGGKAALATA-SGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGI--EVRFTSREE----- 132 (421)
T ss_dssp HHHHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTC--EEEECCTTC-----
T ss_pred HHHHHHHHHHhCCCceEEec-CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCC--EEEEECCCC-----
Confidence 33555899999988777776 89999999999999999999988766665443332 1345566 55656 554
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEccc-chhhhhcCCCCCCCC-CCcEEEecCCc
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAH-YAGLIAAGEYPNPVP-FADFITSTTHK 229 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~-~~g~~~~~~~~~~l~-~~Divv~S~sK 229 (1342)
|++++++++++ ++++|++++++++ ...|+++|+++|++||+++|+|++| +.|... .++. .+|++++|+||
T Consensus 133 d~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~-----~~~~~~~Di~~~s~~K 206 (421)
T 2ctz_A 133 RPEEFLALTDE-KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLL-----RPLAWGAALVTHSLTK 206 (421)
T ss_dssp CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSC-----CGGGGTCSEEEEETTT
T ss_pred CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccC-----CccccCCeEEEECCcc
Confidence 89999998876 4566666665555 4458999999999999999999999 766321 1222 37999999999
Q ss_pred cCCCCC---eeEEEEe--chh----HHHHhhccCCc------------------------cccCCcHHHHHHHHHHHHHh
Q psy13354 230 SLRGPR---GGFILMK--KKY----KKIINSAVFPG------------------------IQGGPLMHVIAAKAVAFKEV 276 (1342)
Q Consensus 230 ~l~gp~---GG~iv~~--~~l----~~~l~~~~~~~------------------------~~~~~~~~~~~Aaa~al~~~ 276 (1342)
+++++. ||+++.+ +++ .+.+......+ ..+....+..+++....
T Consensus 207 ~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~--- 283 (421)
T 2ctz_A 207 WVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLG--- 283 (421)
T ss_dssp TTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHH---
T ss_pred cccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcC---
Confidence 996544 3555542 222 22332210000 01222233333332222
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhC-CcEEee-C----------------CCCCeEEEEEccCCCCCHHHHHHHHHHCC
Q psy13354 277 LKPDFKIYQKQVVKNAKILSKILDQR-GIRIVS-G----------------GTKSHIILVDLRNKKITGKIAESILESAN 338 (1342)
Q Consensus 277 l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~-~----------------~~~~~~v~i~~~~~~~~~~~~~~ll~~~G 338 (1342)
++ .+....+++.+++.++.+.|.+. ++..+. + ...+.++.+.+.+. .+....++++.+
T Consensus 284 l~-~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~---~~~~~~~~~~l~ 359 (421)
T 2ctz_A 284 ME-TLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGG---YEAAKRFISRLK 359 (421)
T ss_dssp HT-THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTH---HHHHHHHHHTCS
T ss_pred cc-hHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCC---HHHHHHHHHhCC
Confidence 22 34455677778999999999885 676553 1 12355777777642 344566666544
Q ss_pred c
Q psy13354 339 I 339 (1342)
Q Consensus 339 I 339 (1342)
+
T Consensus 360 ~ 360 (421)
T 2ctz_A 360 L 360 (421)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.6e-14 Score=156.29 Aligned_cols=203 Identities=14% Similarity=0.183 Sum_probs=143.7
Q ss_pred CCCccccccchhhHHHHHHHHHc---C--------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALDK---K--------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~~---~--------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
+..|++++|++.+++.+.+.+.. . ..++.+||+||||+|||++|+++++.+.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~---------------- 65 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV---------------- 65 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC----------------
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC----------------
Confidence 45799999999999888777632 1 34567999999999999999999999863
Q ss_pred CcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH------------H---
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH------------H--- 514 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~------------~--- 514 (1342)
.++.++++.. .....++.++..+... .+.+|+|||+|.+.. .
T Consensus 66 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~ 128 (262)
T 2qz4_A 66 -------------PFLAMAGAEFVEVIGGLGAARVRSLFKEARAR----APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQ 128 (262)
T ss_dssp -------------CEEEEETTTTSSSSTTHHHHHHHHHHHHHHHT----CSEEEEEECC-------------------CH
T ss_pred -------------CEEEechHHHHhhccChhHHHHHHHHHHHHhc----CCeEEEEeCcchhhccccccccCccchhHHH
Confidence 1333333211 1123455555555432 356999999998831 1
Q ss_pred HHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhH-HHHHHH
Q psy13354 515 AFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSA-LNLIAT 588 (1342)
Q Consensus 515 ~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~a-l~~La~ 588 (1342)
..+.|+..++. .+..+++|+++|.++.+.+++.+ |+ ..+.+++|+.++..+++...+++.+...+.+. ...+++
T Consensus 129 ~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~ 208 (262)
T 2qz4_A 129 TLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAE 208 (262)
T ss_dssp HHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHH
Confidence 23455555554 34578889999998888889988 88 78999999999999999999999888877664 578898
Q ss_pred hcCC-cHHHHHHHHHHHHhhcC----CCCCHHHHHHHhc
Q psy13354 589 GAQG-SMRDALSLTDQAINYSS----EKITLNSMQEMLS 622 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~~----~~It~e~V~~~v~ 622 (1342)
.+.| +.+++.++++.+...+. ..|+.+++.+++.
T Consensus 209 ~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~ 247 (262)
T 2qz4_A 209 LTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVE 247 (262)
T ss_dssp TCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 8876 46688888888776653 2377777766653
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-13 Score=164.75 Aligned_cols=289 Identities=16% Similarity=0.065 Sum_probs=165.2
Q ss_pred CceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
+.|.+.++. +. .+|.+.+++.+.+..... +.... +...+++++++++++..+.+++++||++|+
T Consensus 56 ~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-------~~~~~----~~~~~l~~~la~~~~~~~~v~~~~sGsea~ 124 (434)
T 3l44_A 56 KYIDYLAAYGPIITGHAHPHITKAITTAAENGVL-------YGTPT----ALEVKFAKMLKEAMPALDKVRFVNSGTEAV 124 (434)
T ss_dssp EEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSC-------CSSCC----HHHHHHHHHHHHHCTTCSEEEEESSHHHHH
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHhCcC-------CCCCC----HHHHHHHHHHHHhCCCCCEEEEeCchHHHH
Confidence 345555543 23 367799999988854211 11112 233445558888876445566666999999
Q ss_pred HHHHHHccC--CCCEEEEeeccCCccchhhHHhhhCCcee-----------------EEEEecCCCCCCCCHHHHHHHHH
Q psy13354 103 QAVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWF-----------------NSICYGLNKKEKIDYKKVEYLAK 163 (1342)
Q Consensus 103 ~~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~-----------------~~v~~~~~~~~~id~e~Le~~i~ 163 (1342)
..++..+.. ++++|++....+.++..... ...|... .++.++++ |++++++++.
T Consensus 125 ~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~ 197 (434)
T 3l44_A 125 MTTIRVARAYTGRTKIMKFAGCYHGHSDLVL--VAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEALD 197 (434)
T ss_dssp HHHHHHHHHHHCCCEEEEETTCCCCSSGGGG--BC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEEcCccCCCcHHHH--hhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHHHH
Confidence 999988754 77899987666544332211 1111110 12222322 8999999887
Q ss_pred h--cCCeEEEEcCCCCCc--ccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCC
Q psy13354 164 K--NKPKLIIAGASAYSQ--YID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLR 232 (1342)
Q Consensus 164 ~--~~~~liv~~~s~~~~--~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~ 232 (1342)
+ .+.+++++.+.++++ ..+ +++|.++|++||++||+||+|... ..+... .... ..|++ ++||+++
T Consensus 198 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~--~~g~~~~~~~~~~~~di~--t~sK~~~ 273 (434)
T 3l44_A 198 KWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF--RFMYGGAQDLLGVTPDLT--ALGKVIG 273 (434)
T ss_dssp HHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT--TSSSSCHHHHHTCCCSEE--EEEGGGG
T ss_pred hCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce--eccccHHHHHcCCCCCee--ehhhhhc
Confidence 5 345666665544432 334 999999999999999999999632 222111 0011 14655 5679995
Q ss_pred CCCe-eEEEEechhHHHHhhcc---CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCc
Q psy13354 233 GPRG-GFILMKKKYKKIINSAV---FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGI 304 (1342)
Q Consensus 233 gp~G-G~iv~~~~l~~~l~~~~---~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~ 304 (1342)
++.. |++++++++++.+.... ....++ . ++..++++.+..+...+ +++.+++.++++++++.|.+ .++
T Consensus 274 ~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~-~-~~~a~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~ 349 (434)
T 3l44_A 274 GGLPIGAYGGKKEIMEQVAPLGPAYQAGTMA-G-NPASMASGIACLEVLQQ--EGLYEKLDELGATLEKGILEQAAKHNI 349 (434)
T ss_dssp TTSSCEEEEECHHHHTTBTTTSSBCCCCTTT-T-CHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcCeeeEEEcHHHHHhhccCCCcccCCCCC-c-CHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3222 99999999888776521 111222 2 33444444444444332 34566777777777777765 343
Q ss_pred EEeeCCCCCeEEEEEccCCCC-------------CHHHHHHHHHHCCceeeec
Q psy13354 305 RIVSGGTKSHIILVDLRNKKI-------------TGKIAESILESANIICNKN 344 (1342)
Q Consensus 305 ~~~~~~~~~~~v~i~~~~~~~-------------~~~~~~~ll~~~GI~v~~~ 344 (1342)
.... ...+.++++.+..... ..++...+++ +||.+.+.
T Consensus 350 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~ 400 (434)
T 3l44_A 350 DITL-NRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPS 400 (434)
T ss_dssp CEEE-EEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSS
T ss_pred CEEE-EeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeec
Confidence 2212 1235567776643211 1345555555 59998754
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-13 Score=164.86 Aligned_cols=202 Identities=20% Similarity=0.278 Sum_probs=150.1
Q ss_pred CCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
+.+|++++|++.+++.+.+.+.. .+.+..+||+||||||||++|++++..++.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~---------------- 75 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV---------------- 75 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC----------------
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC----------------
Confidence 34899999999999888877642 246778999999999999999999998863
Q ss_pred CcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------HH
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------------HA 515 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------------~~ 515 (1342)
.++.++++.. .+...++.++..+.. ..+.||+|||+|.+.. ..
T Consensus 76 -------------~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~----~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~ 138 (476)
T 2ce7_A 76 -------------PFFHISGSDFVELFVGVGAARVRDLFAQAKA----HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQT 138 (476)
T ss_dssp -------------CEEEEEGGGTTTCCTTHHHHHHHHHHHHHHH----TCSEEEEEETGGGTCCC---------CHHHHH
T ss_pred -------------CeeeCCHHHHHHHHhcccHHHHHHHHHHHHh----cCCCEEEEechhhhhhhcccccCcCcHHHHHH
Confidence 1233332211 122356667666643 2356999999998732 24
Q ss_pred HHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchh-HHHHHHHh
Q psy13354 516 FNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETS-ALNLIATG 589 (1342)
Q Consensus 516 ~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~-al~~La~~ 589 (1342)
++.|+..++. .+..+++|.+||.++.+.+++.+ |+ ..+.+.+|+.++..++++.++++..+ .++ .+..+++.
T Consensus 139 l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l--~~~v~l~~la~~ 216 (476)
T 2ce7_A 139 LNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL--AEDVNLEIIAKR 216 (476)
T ss_dssp HHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CTTCCHHHHHHT
T ss_pred HHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC--cchhhHHHHHHh
Confidence 5677777763 34578899999999888888876 77 68899999999999999888776543 333 37889999
Q ss_pred cCCcH-HHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 590 AQGSM-RDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 590 ~~g~l-r~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
+.|+. +++.+.++.+..++ ...|+.+++.+++..
T Consensus 217 t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~ 255 (476)
T 2ce7_A 217 TPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDR 255 (476)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHH
Confidence 98877 88999999876654 235999998887754
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-14 Score=168.37 Aligned_cols=291 Identities=13% Similarity=0.082 Sum_probs=169.0
Q ss_pred ceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh-CCCCceEecCCHHHHH
Q psy13354 29 NIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF-NAEAANVQPHSGSQAN 102 (1342)
Q Consensus 29 ~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~-g~~~~vi~~~sGs~A~ 102 (1342)
.|.+.++. ++ .+|.+.+++.+.+.... .+ .+ .. ++..++++++++++ +.+. +++++||++|+
T Consensus 58 ~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~---~~--~~----~~~~~l~~~la~~~~~~~~-v~~~~sgseA~ 125 (434)
T 2epj_A 58 IVDLVLAYGPLILGHKHPRVLEAVEEALARGW--LY---GA--PG----EAEVLLAEKILGYVKRGGM-IRFVNSGTEAT 125 (434)
T ss_dssp EEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS--CC---SS--CC----HHHHHHHHHHHHHHCTTCE-EEEESSHHHHH
T ss_pred EEEcccchhcccCCCCCHHHHHHHHHHHHhCC--CC---CC--CC----HHHHHHHHHHHHhCCCCCE-EEEeCCHHHHH
Confidence 45555553 23 46779999988885311 11 11 12 44455666888888 5444 55555999999
Q ss_pred HHHHHHc--cCCCCEEEEeeccCCccchhhHHh-----------hhCCce----eEEEEecCCCCCCCCHHHHHHHHHh-
Q psy13354 103 QAVFFSV--LNPGDTIMGMSLQEGGHLTHGMML-----------NMSGKW----FNSICYGLNKKEKIDYKKVEYLAKK- 164 (1342)
Q Consensus 103 ~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~~-----------~~~g~~----~~~v~~~~~~~~~id~e~Le~~i~~- 164 (1342)
..++.+. +.+++.|++....+.++....... ...|.. ..++.++.+ |++++++.+++
T Consensus 126 ~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~ 200 (434)
T 2epj_A 126 MTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERVFAEY 200 (434)
T ss_dssp HHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC-----CHHHHHHHHHhC
Confidence 9999872 334677877665554432211000 011221 123334443 89999998875
Q ss_pred -cCCeEEEEcCCCCC-c-ccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCC-
Q psy13354 165 -NKPKLIIAGASAYS-Q-YID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRG- 233 (1342)
Q Consensus 165 -~~~~liv~~~s~~~-~-~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~g- 233 (1342)
.++++|++.+.+++ + ..+ +++|.++|++||++||+||+|+ |+. .+... .... .+|++ |+||++++
T Consensus 201 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~-~g~~~~~~~~~~~~di~--s~sK~l~~G 276 (434)
T 2epj_A 201 GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFR-LGLEGAQGYFNIEGDII--VLGKIIGGG 276 (434)
T ss_dssp GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTT-SSTTHHHHHHTCCCSEE--EEEGGGGTT
T ss_pred CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-cee-CCcchhhHHhCCCCCee--eecchhcCC
Confidence 24566776554332 3 345 9999999999999999999997 432 12110 0011 24765 67799943
Q ss_pred CCeeEEEEechhHHHHhhccCCccccC-CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEee
Q psy13354 234 PRGGFILMKKKYKKIINSAVFPGIQGG-PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVS 308 (1342)
Q Consensus 234 p~GG~iv~~~~l~~~l~~~~~~~~~~~-~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~ 308 (1342)
..+|++++++++++.+......+..++ ..++...+++.+..+.+.+ ++..+++.++++++.+.|.+. ++....
T Consensus 277 ~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 354 (434)
T 2epj_A 277 FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE--EPVYSVSREAAKALEEAASEVLDRTGLPYTI 354 (434)
T ss_dssp SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred cceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 244999999988877654211111111 1233344444444443321 235677888888888888764 553211
Q ss_pred CCCCCeEEEEEccCCC-------------CCHHHHHHHHHHCCceeeec
Q psy13354 309 GGTKSHIILVDLRNKK-------------ITGKIAESILESANIICNKN 344 (1342)
Q Consensus 309 ~~~~~~~v~i~~~~~~-------------~~~~~~~~ll~~~GI~v~~~ 344 (1342)
. ..+.++|+.++... ...++...++ ++||.+.++
T Consensus 355 ~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~ 401 (434)
T 2epj_A 355 N-RVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEML-RRGVFIAPS 401 (434)
T ss_dssp E-EETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHH-HTTEECCSS
T ss_pred E-EeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHH-HCCeEEecc
Confidence 1 23567888876411 1234555555 469999864
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-13 Score=161.89 Aligned_cols=290 Identities=13% Similarity=0.059 Sum_probs=166.7
Q ss_pred CceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
+.|.+.++. +. .+|.+.+|+.+.+..... ++...+. ..+++++++++++..+.+++++||++|+
T Consensus 54 ~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-------~~~~~~~----~~~l~~~la~~~~~~~~v~~~~~Gsea~ 122 (429)
T 3k28_A 54 EYIDYVLSWGPLIHGHANDRVVEALKAVAERGTS-------FGAPTEI----ENKLAKLVIERVPSIEIVRMVNSGTEAT 122 (429)
T ss_dssp EEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSC-------CSSCCHH----HHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred EEEECCCChhhcccCCCCHHHHHHHHHHHhhCcC-------cCCCCHH----HHHHHHHHHHhCCCCCEEEEeCChHHHH
Confidence 346555543 23 467799999988853211 1112233 3334558888875344556666999999
Q ss_pred HHHHHHccC--CCCEEEEeeccCCccchhhHHhhhCCcee-----------------EEEEecCCCCCCCCHHHHHHHHH
Q psy13354 103 QAVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWF-----------------NSICYGLNKKEKIDYKKVEYLAK 163 (1342)
Q Consensus 103 ~~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~-----------------~~v~~~~~~~~~id~e~Le~~i~ 163 (1342)
..++..+.. ++++|++.+..+.++.... ....|... ..+.++.+ |++++++++.
T Consensus 123 ~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~ 195 (429)
T 3k28_A 123 MSALRLARGYTGRNKILKFIGCYHGHGDSL--LIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN-----DLESVKYAFE 195 (429)
T ss_dssp HHHHHHHHHHHTCCEEEEEETCCCCSCGGG--CSSCCTTC-----CCCTTCCHHHHTTEEEEETT-----CHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEECCCcCCCcHHH--HHhcCCcccccCCCCcCCCCCcccCceeecCCC-----CHHHHHHHHH
Confidence 999987753 6778887665554432221 11111111 12222322 8999999887
Q ss_pred h--cCCeEEEEcCCCCC--cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCC
Q psy13354 164 K--NKPKLIIAGASAYS--QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLR 232 (1342)
Q Consensus 164 ~--~~~~liv~~~s~~~--~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~ 232 (1342)
+ .+++++++.+.+++ ...+ +++|.++|++||++||+||+|. |+ ..+.... ... ..|++ ++||+++
T Consensus 196 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~--t~sK~~~ 271 (429)
T 3k28_A 196 QFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMT-GF-RVAYNCGQGYYGVTPDLT--CLGKVIG 271 (429)
T ss_dssp HHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TT-TSSTTHHHHHHTCCCSEE--EECGGGG
T ss_pred hCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchHHHHhCCCCcee--hhhhhhc
Confidence 4 34566666554433 2334 9999999999999999999995 22 2221100 011 14665 5679994
Q ss_pred CC-CeeEEEEechhHHHHhhccCC-ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEE
Q psy13354 233 GP-RGGFILMKKKYKKIINSAVFP-GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRI 306 (1342)
Q Consensus 233 gp-~GG~iv~~~~l~~~l~~~~~~-~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~ 306 (1342)
++ ..|++++++++++.+...... ...+...++...+++.+..+... ++..+++.++++++.+.|.+. ++..
T Consensus 272 ~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 348 (429)
T 3k28_A 272 GGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT---PESYVEFERKAEMLEAGLRKAAEKHGIPH 348 (429)
T ss_dssp TTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence 32 239999999988877542211 11111223344444444455443 567788888888888888763 3211
Q ss_pred eeCCCCCeEEEEEccCCCC-------------CHHHHHHHHHHCCceeeec
Q psy13354 307 VSGGTKSHIILVDLRNKKI-------------TGKIAESILESANIICNKN 344 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~~~~-------------~~~~~~~ll~~~GI~v~~~ 344 (1342)
... ..+.++++.+..... ..++...+++ +||.+.+.
T Consensus 349 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~ 397 (429)
T 3k28_A 349 HIN-RAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVE-QGVFLPPS 397 (429)
T ss_dssp EEE-EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSS
T ss_pred EEE-eeccEEEEEEecCCcccccccccccHHHHHHHHHHHHH-CCeEEecC
Confidence 111 234566666543211 1345556655 59998754
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.4e-13 Score=160.26 Aligned_cols=293 Identities=16% Similarity=0.100 Sum_probs=167.1
Q ss_pred CceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..|.+.++. +. .+|.+.+++.+.+.. .. . ++. ..+...+++++++++++..+.+++++||++|+
T Consensus 53 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~-~------~~~---~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~ 121 (427)
T 3fq8_A 53 RYIDYVGTWGPAICGHAHPEVIEALKVAMEK-GT-S------FGA---PCALENVLAEMVNDAVPSIEMVRFVNSGTEAC 121 (427)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHTT-CS-C------CSS---CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred EEEECCCchhhhccCCCCHHHHHHHHHHHHh-CC-C------cCC---CCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHH
Confidence 346655553 23 467799998888742 21 1 111 12455566678999886445666666999999
Q ss_pred HHHHHHcc--CCCCEEEEeeccCCccchhhHHhh-----------hCCc----eeEEEEecCCCCCCCCHHHHHHHHHhc
Q psy13354 103 QAVFFSVL--NPGDTIMGMSLQEGGHLTHGMMLN-----------MSGK----WFNSICYGLNKKEKIDYKKVEYLAKKN 165 (1342)
Q Consensus 103 ~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~-----------~~g~----~~~~v~~~~~~~~~id~e~Le~~i~~~ 165 (1342)
..++.... ..+++|++....+.++........ ..+. ...++.++.+ |++++++++++.
T Consensus 122 ~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~ 196 (427)
T 3fq8_A 122 MAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAEN 196 (427)
T ss_dssp HHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhC
Confidence 99995431 345788876655544322111100 0000 0012333333 899999999864
Q ss_pred --CCeEEEEcCCCCC--cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC
Q psy13354 166 --KPKLIIAGASAYS--QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP 234 (1342)
Q Consensus 166 --~~~liv~~~s~~~--~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp 234 (1342)
+++++++.+.+++ ...+ +++|.++|++||++||+||+|. |+ ..+... .... ..|++ |+||++++.
T Consensus 197 ~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~--t~sK~~~~G 272 (427)
T 3fq8_A 197 PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF-RIAYGGVQEKFGVTPDLT--TLGKIIGGG 272 (427)
T ss_dssp TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT-TTBTTHHHHHTTCCCSEE--EECGGGGTT
T ss_pred CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchhhHhcCCCCChh--hhhhhhhCC
Confidence 4567777654443 2334 9999999999999999999997 33 211110 0011 14654 566999532
Q ss_pred -CeeEEEEechhHHHHhhccCCccccC-CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEee
Q psy13354 235 -RGGFILMKKKYKKIINSAVFPGIQGG-PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVS 308 (1342)
Q Consensus 235 -~GG~iv~~~~l~~~l~~~~~~~~~~~-~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~ 308 (1342)
..|++++++++++.+.........++ ..++..++++.+..+...+ +.+.+++.++.+++++.|.+. ++....
T Consensus 273 ~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 350 (427)
T 3fq8_A 273 LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ--PGTYEYLDQITKRLSDGLLAIAQETGHAACG 350 (427)
T ss_dssp SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred cceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 23999999998887764211111111 1133444444444444322 245667777777777777653 332211
Q ss_pred CCCCCeEEEEEccCCCCC-------------HHHHHHHHHHCCceeeec
Q psy13354 309 GGTKSHIILVDLRNKKIT-------------GKIAESILESANIICNKN 344 (1342)
Q Consensus 309 ~~~~~~~v~i~~~~~~~~-------------~~~~~~ll~~~GI~v~~~ 344 (1342)
...+.++++.+...... .++...+++ +||.+.+.
T Consensus 351 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~ 397 (427)
T 3fq8_A 351 -GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPS 397 (427)
T ss_dssp -EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSS
T ss_pred -EEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecC
Confidence 12356778877653221 345555555 59999854
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-13 Score=163.66 Aligned_cols=293 Identities=13% Similarity=0.056 Sum_probs=163.8
Q ss_pred CceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..|.+.++. +. .+|.+.+++.+.+......+ + .. +...+++++++++++..+.+++++||++|+
T Consensus 54 ~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~------~-~~----~~~~~la~~l~~~~~~~~~v~~~~sGsea~ 122 (429)
T 4e77_A 54 AYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFG------A-PT----EMEVKMAQLVTDLVPTMDMVRMVNSGTEAT 122 (429)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCS------S-CC----HHHHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHhCcccC------C-CC----HHHHHHHHHHHhhCCCCCEEEEeCcHHHHH
Confidence 346555553 22 36789999988875321111 1 12 344455668888886445566666999999
Q ss_pred HHHHHHcc--CCCCEEEEeeccCCccchhhHHh-----------hhCCc----eeEEEEecCCCCCCCCHHHHHHHHHhc
Q psy13354 103 QAVFFSVL--NPGDTIMGMSLQEGGHLTHGMML-----------NMSGK----WFNSICYGLNKKEKIDYKKVEYLAKKN 165 (1342)
Q Consensus 103 ~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~~-----------~~~g~----~~~~v~~~~~~~~~id~e~Le~~i~~~ 165 (1342)
..++.... .+++.|++....+.+........ ...+. ......++.+ |++++++++++.
T Consensus 123 ~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~ 197 (429)
T 4e77_A 123 MSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVRQAFEQY 197 (429)
T ss_dssp HHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTT-----CHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCC-----CHHHHHHHHHhc
Confidence 99998643 35677777654443332110000 00010 0012222322 899999999863
Q ss_pred --CCeEEEEcCCCCC--cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC
Q psy13354 166 --KPKLIIAGASAYS--QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP 234 (1342)
Q Consensus 166 --~~~liv~~~s~~~--~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp 234 (1342)
+.++|++.+.+++ ...+ +++|.++|++||++||+||+|. |+ ..+... .... ..|++ |+||+++++
T Consensus 198 ~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~-r~g~~~~~~~~~~~pdi~--t~sK~~~~G 273 (429)
T 4e77_A 198 PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT-GF-RVALAGAQDYYHVIPDLT--CLGKIIGGG 273 (429)
T ss_dssp TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT-BT-TTBTTCHHHHTTCCCSEE--EEEGGGGTT
T ss_pred CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-ccCcchHHHhcCCCCCee--eecccccCC
Confidence 3456666443332 2234 9999999999999999999997 22 111111 0111 24765 667999532
Q ss_pred -CeeEEEEechhHHHHhhccCCccccC-CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcEEee
Q psy13354 235 -RGGFILMKKKYKKIINSAVFPGIQGG-PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIRIVS 308 (1342)
Q Consensus 235 -~GG~iv~~~~l~~~l~~~~~~~~~~~-~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~~~~ 308 (1342)
..|++++++++++.+.........++ ..++..++++.+..+.+.+ +++.+++.++.+++++.|.+ .++....
T Consensus 274 ~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 351 (429)
T 4e77_A 274 MPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ--VGVYETLTELTDSLATGLRHAAKEENIPLVV 351 (429)
T ss_dssp SCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 33999999988887765311111111 2233444444444444321 23556677777777777765 3443222
Q ss_pred CCCCCeEEEEEccCCCC--------------CHHHHHHHHHHCCceeeec
Q psy13354 309 GGTKSHIILVDLRNKKI--------------TGKIAESILESANIICNKN 344 (1342)
Q Consensus 309 ~~~~~~~v~i~~~~~~~--------------~~~~~~~ll~~~GI~v~~~ 344 (1342)
...+.++++.+..... ..++...++++ ||.+.+.
T Consensus 352 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~ 399 (429)
T 4e77_A 352 -NHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPS 399 (429)
T ss_dssp -EEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSS
T ss_pred -EEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeec
Confidence 1245678888765310 14566666655 9998864
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.6e-14 Score=161.68 Aligned_cols=188 Identities=14% Similarity=0.167 Sum_probs=135.6
Q ss_pred CCCccccc-c--chhhHHHHHHHHHcCC-CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 387 PSNFNTLI-G--QNHISKSLINALDKKR-LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 387 p~~f~~lv-G--q~~~~~~L~~~l~~~~-~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
..+|++++ | +..+...+...+.... .++.++|+||+|+|||++++.+++.+...+
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~--------------------- 65 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG--------------------- 65 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTT---------------------
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCC---------------------
Confidence 34788887 5 4555667777776643 456699999999999999999999985320
Q ss_pred ccCCCccEEEEccCCCcCHHHHHHHHHHHhhc------CccCCceEEEeccCccCCH--HHHHHHHHhhcCC-CCcEEEE
Q psy13354 463 DNGCFMDYIEMDAASTRGINEMAQLLEQTIYA------PINARYKIYVIDEVHMLTH--HAFNAMLKTLEEP-PKYIKFI 533 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~------p~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p-~~~~vlI 533 (1342)
..++.+++... ..++....... .......+++|||++.+.. ..++.|+.+++.. .....+|
T Consensus 66 -----~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~ii 135 (324)
T 1l8q_A 66 -----YRVIYSSADDF-----AQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQII 135 (324)
T ss_dssp -----CCEEEEEHHHH-----HHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred -----CEEEEEEHHHH-----HHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEE
Confidence 13444544321 11111111100 0112356999999999874 5666777766532 1233456
Q ss_pred EEeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy13354 534 LATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 534 l~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~ 606 (1342)
++++.+. .+.+++.+|+ .++++++ +.++...++...++..++.++++++++|++.+ ||+|.+.+.++++..
T Consensus 136 i~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~ 213 (324)
T 1l8q_A 136 LASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKL 213 (324)
T ss_dssp EEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHH
T ss_pred EEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 6665432 5778999999 8899999 99999999999999999999999999999999 999999999999887
Q ss_pred h
Q psy13354 607 Y 607 (1342)
Q Consensus 607 ~ 607 (1342)
+
T Consensus 214 ~ 214 (324)
T 1l8q_A 214 K 214 (324)
T ss_dssp H
T ss_pred c
Confidence 7
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-13 Score=159.30 Aligned_cols=219 Identities=14% Similarity=0.140 Sum_probs=151.5
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
..|.++++|..+++++||+++++.+..++..+ +.+||+||||+|||++|+.+++.+++.. ....|.....
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~---~~vll~G~pGtGKT~la~~la~~~~~~~-------~~i~~~~~~~ 84 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTG---GHILLEGVPGLAKTLSVNTLAKTMDLDF-------HRIQFTPDLL 84 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT---CCEEEESCCCHHHHHHHHHHHHHTTCCE-------EEEECCTTCC
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcC---CeEEEECCCCCcHHHHHHHHHHHhCCCe-------EEEecCCCCC
Confidence 46899999999999999999999999998876 3589999999999999999999886310 0111110000
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC-----------C
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP-----------P 527 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p-----------~ 527 (1342)
...+.. ...++... +. + .....+.+ ..+++|||++.++.+.++.|++.+++. +
T Consensus 85 ~~~l~g-----~~~~~~~~--~~--~-----~~~~g~l~--~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~ 148 (331)
T 2r44_A 85 PSDLIG-----TMIYNQHK--GN--F-----EVKKGPVF--SNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLD 148 (331)
T ss_dssp HHHHHE-----EEEEETTT--TE--E-----EEEECTTC--SSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECC
T ss_pred hhhcCC-----ceeecCCC--Cc--e-----EeccCccc--ccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECC
Confidence 000000 00000000 00 0 00001111 259999999999999999999998853 4
Q ss_pred CcEEEEEEeCCCC-----CChHHHhccEE-EEEEcCCCHHHHHHHHHHHHHhc----------------------CCCcc
Q psy13354 528 KYIKFILATTEPQ-----KIPITVLSRCI-QFNLKKMLHHDIVNNLCYILNKE----------------------NIKFE 579 (1342)
Q Consensus 528 ~~~vlIl~t~~~~-----kl~~~L~sR~~-~i~~~~l~~~el~~~l~~~~~~~----------------------g~~i~ 579 (1342)
..+++|.++|..+ .+.+++.+||. .+.+.+|+.++..++++..+... ++.++
T Consensus 149 ~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 228 (331)
T 2r44_A 149 NPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTIS 228 (331)
T ss_dssp SSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCC
T ss_pred CCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCC
Confidence 4555665555322 37899999994 69999999999999998887652 77899
Q ss_pred hhHHHHHHHhc--------------------CCcHHHHHHHHHHHHhhc---C-CCCCHHHHHHHhcc
Q psy13354 580 TSALNLIATGA--------------------QGSMRDALSLTDQAINYS---S-EKITLNSMQEMLSI 623 (1342)
Q Consensus 580 ~~al~~La~~~--------------------~g~lr~a~~~L~kl~~~~---~-~~It~e~V~~~v~~ 623 (1342)
+++++++++.+ +.++|.+.+++..+..++ + ..|+.++|.+++..
T Consensus 229 ~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 229 ESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp HHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 99999998754 227999998887655443 2 34999999887743
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-13 Score=159.53 Aligned_cols=237 Identities=15% Similarity=0.127 Sum_probs=158.2
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc---CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK---KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~---~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
++..+|.| ++++|++..++.+.+.+.. +..++.++|+||+|+|||++++.+++.+...... .....+..|..+
T Consensus 12 ~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~~~i~~~~~ 87 (386)
T 2qby_A 12 YLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-KFKHVYINTRQI 87 (386)
T ss_dssp GGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-SCEEEEEEHHHH
T ss_pred hCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-CceEEEEECCCC
Confidence 45566776 7789999999999998874 5556779999999999999999999988532100 001111222211
Q ss_pred cchhhhccCCCccEEEEcc-CCCcCHHH-HHHHHHHHhhcCccCCceEEEeccCccCC----HHHHHHHHHhhcC-CCCc
Q psy13354 457 SVCVKIDNGCFMDYIEMDA-ASTRGINE-MAQLLEQTIYAPINARYKIYVIDEVHMLT----HHAFNAMLKTLEE-PPKY 529 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~-~~~~~~~~-i~~ii~~~~~~p~~~~~rvviIDE~~~L~----~~~~~~Ll~~Le~-p~~~ 529 (1342)
.....+.......+ .... ........ +..+.+.+.. .+.+.+|+|||++.+. .+....|++.+++ +...
T Consensus 88 ~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~ 163 (386)
T 2qby_A 88 DTPYRVLADLLESL-DVKVPFTGLSIAELYRRLVKAVRD---YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSK 163 (386)
T ss_dssp CSHHHHHHHHTTTT-SCCCCSSSCCHHHHHHHHHHHHHT---CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--
T ss_pred CCHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHhc---cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCe
Confidence 11111000000000 0000 01111233 3333333322 2346799999999874 3456677777765 3457
Q ss_pred EEEEEEeCCCC---CChHHHhccE--EEEEEcCCCHHHHHHHHHHHHHhc--CCCcchhHHHHHHHhcC---CcHHHHHH
Q psy13354 530 IKFILATTEPQ---KIPITVLSRC--IQFNLKKMLHHDIVNNLCYILNKE--NIKFETSALNLIATGAQ---GSMRDALS 599 (1342)
Q Consensus 530 ~vlIl~t~~~~---kl~~~L~sR~--~~i~~~~l~~~el~~~l~~~~~~~--g~~i~~~al~~La~~~~---g~lr~a~~ 599 (1342)
+.+|++++..+ .+.+.+.+|+ ..+.|++++.+++.+++..++... ...+++++++.+++.++ |++|.+++
T Consensus 164 ~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 164 ISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred EEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 88899988763 5667888998 799999999999999999988753 36789999999999998 99999999
Q ss_pred HHHHHHhhc----CCCCCHHHHHHHhccC
Q psy13354 600 LTDQAINYS----SEKITLNSMQEMLSII 624 (1342)
Q Consensus 600 ~L~kl~~~~----~~~It~e~V~~~v~~~ 624 (1342)
.++.+...+ ...|+.++|++++...
T Consensus 244 ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 244 LLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 999877654 2469999999887553
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5e-13 Score=162.93 Aligned_cols=299 Identities=9% Similarity=0.065 Sum_probs=172.9
Q ss_pred CcHHHH-H-HHhH---HHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CCCceEecCCHHHHHHHHHHHcc-
Q psy13354 39 TSLAVM-E-AQGT---LLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AEAANVQPHSGSQANQAVFFSVL- 110 (1342)
Q Consensus 39 l~~~v~-e-al~~---~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~~~vi~~~sGs~A~~~al~al~- 110 (1342)
.+|.+. + |+.+ .+.. .. .+. .. + .. +...++++.++++++ ..+.+++++||++|+..++..+.
T Consensus 71 ~~p~v~~~~A~~~~~~~~~~-~~-~~~-~~-~-~~----~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~ 141 (449)
T 2cjg_A 71 NPPALVDDREFHAELMQAAL-NK-PSN-SD-V-YS----VAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFD 141 (449)
T ss_dssp SCHHHHTCHHHHHHHHHHHT-CC-CCT-TT-C-CC----HHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh-cC-CCC-cc-c-CC----HHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHH
Confidence 467899 8 9888 5532 21 111 11 1 12 333445558888885 23456666699999999997542
Q ss_pred --C----------C-CCEEEEeeccCCccchhhHHhh------hCCc---eeEEEEecCCC--CC--------CCCHHHH
Q psy13354 111 --N----------P-GDTIMGMSLQEGGHLTHGMMLN------MSGK---WFNSICYGLNK--KE--------KIDYKKV 158 (1342)
Q Consensus 111 --~----------p-GD~Vlv~~~~~~~~~s~~~~~~------~~g~---~~~~v~~~~~~--~~--------~id~e~L 158 (1342)
. | ||+|++....+.++...+.... ..+. ...++.++.++ .. ..+++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l 221 (449)
T 2cjg_A 142 WKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQA 221 (449)
T ss_dssp HHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHH
Confidence 2 2 8999988766655433221110 1111 01334444443 11 2456678
Q ss_pred HHHHHh--cCCeEEEEcCCCCC-c-ccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecC
Q psy13354 159 EYLAKK--NKPKLIIAGASAYS-Q-YID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTT 227 (1342)
Q Consensus 159 e~~i~~--~~~~liv~~~s~~~-~-~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~ 227 (1342)
++.+.+ .++++|++.+.+++ + ..+ +++|.++|++||++||+||+|. |....+.... ..+ ..|++ ++
T Consensus 222 e~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~ 298 (449)
T 2cjg_A 222 RAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT-GCGLTGTAWAYQQLDVAPDIV--AF 298 (449)
T ss_dssp HHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEE--EE
T ss_pred HHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc-CCCccCcceeecccCCCceEE--Ee
Confidence 888863 34566776554333 4 345 9999999999999999999997 2211122111 111 24766 56
Q ss_pred CccCCCCCeeEEEEechhHHHHhh-----ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 228 HKSLRGPRGGFILMKKKYKKIINS-----AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 228 sK~l~gp~GG~iv~~~~l~~~l~~-----~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
||++ + -|++++++++++.+.. ......++ .+...++|+.+++ +...+ +.+.+++.++++++.+.|.+.
T Consensus 299 sK~l--~-iG~~~~~~~~~~~l~~~~~~~~~~~~t~~-~n~~~~~aa~aal-~~~~~--~~~~~~~~~~~~~l~~~L~~l 371 (449)
T 2cjg_A 299 GKKT--Q-VCGVMAGRRVDEVADNVFAVPSRLNSTWG-GNLTDMVRARRIL-EVIEA--EGLFERAVQHGKYLRARLDEL 371 (449)
T ss_dssp CGGG--S-SEEEEECGGGGGSTTCTTTSTTSSCCSSS-SCHHHHHHHHHHH-HHHHH--HTHHHHHHHHHHHHHHHHHHH
T ss_pred cCcc--c-EEEEEECHHHhhhhhhcccCCcccccCCC-CCHHHHHHHHHHH-HHHHh--ccHHHHHHHHHHHHHHHHHHH
Confidence 7999 4 4677788888765321 11222222 2344444444444 33321 345678888899999888763
Q ss_pred ----C--cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 303 ----G--IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 303 ----g--~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+ +.... ..+.+++++++......++...+++ +||.+.+.. .+.+|++++..++.
T Consensus 372 ~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g----------~~~iRi~~~~~~t~ 431 (449)
T 2cjg_A 372 AADFPAVVLDPR--GRGLMCAFSLPTTADRDELIRQLWQ-RAVIVLPAG----------ADTVRFRPPLTVST 431 (449)
T ss_dssp HHHSTTTSEEEE--EETTEEEEECSSHHHHHHHHHHHHH-TTEECEEET----------TTEEEECCCTTCCH
T ss_pred HhhCCCceeeEe--eccEEEEEEECChHHHHHHHHHHHH-CCeEEecCC----------CCEEEEECCCCCCH
Confidence 2 33222 2355777887643224467777775 699998751 25699987766553
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-13 Score=154.23 Aligned_cols=191 Identities=18% Similarity=0.259 Sum_probs=140.6
Q ss_pred ccCCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccC
Q psy13354 384 KYRPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQ 451 (1342)
Q Consensus 384 k~~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~ 451 (1342)
+..+.+|++++|++.+++.|.+.+.. -..+..+||+||+|||||++|+++++.+.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~------------ 75 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA------------ 75 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC------------
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC------------
Confidence 45677899999999999999988753 245678999999999999999999998863
Q ss_pred CCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH-----------
Q psy13354 452 PCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH----------- 514 (1342)
Q Consensus 452 ~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~----------- 514 (1342)
.++.++++. ......++.+++.+... .+.+++|||++.+...
T Consensus 76 -----------------~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~ 134 (301)
T 3cf0_A 76 -----------------NFISIKGPELLTMWFGESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGA 134 (301)
T ss_dssp -----------------EEEEECHHHHHHHHHTTCTTHHHHHHHHHHHT----CSEEEEECSTTHHHHHHTTTTCCSSCS
T ss_pred -----------------CEEEEEhHHHHhhhcCchHHHHHHHHHHHHhc----CCeEEEEEChHHHhhccCCCcCCcchH
Confidence 233333221 01123455666655432 3469999999977432
Q ss_pred ---HHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHH
Q psy13354 515 ---AFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586 (1342)
Q Consensus 515 ---~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~L 586 (1342)
..+.|+..++. ...++++|++||.++.+.+++.+ |+ ..+.++.|+.++..++++..+++.+.. .+..++.+
T Consensus 135 ~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~l 213 (301)
T 3cf0_A 135 ADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFL 213 (301)
T ss_dssp CCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHH
Confidence 35788888874 34578899999999999999887 77 789999999999999999998877653 23346677
Q ss_pred HHhcCC-cHHHHHHHHHHHHhhc
Q psy13354 587 ATGAQG-SMRDALSLTDQAINYS 608 (1342)
Q Consensus 587 a~~~~g-~lr~a~~~L~kl~~~~ 608 (1342)
+..+.| +-+++.+++++++..+
T Consensus 214 a~~~~g~sg~dl~~l~~~a~~~a 236 (301)
T 3cf0_A 214 AKMTNGFSGADLTEICQRACKLA 236 (301)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Confidence 777654 4557777777665543
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-14 Score=159.40 Aligned_cols=201 Identities=14% Similarity=0.137 Sum_probs=136.4
Q ss_pred hhccCCCCccccccchhhHHHHHHHH----HcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 382 ARKYRPSNFNTLIGQNHISKSLINAL----DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 382 ~~k~~p~~f~~lvGq~~~~~~L~~~l----~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
-.-|.|..+ |+|++..++.+...+ ..+ .+++++|+||||||||++++.+++.+........
T Consensus 13 ~~~~~~~~~--L~~Re~E~~~i~~~L~~~i~~~-~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~------------ 77 (318)
T 3te6_A 13 RESLQKREL--LKSQVEDFTRIFLPIYDSLMSS-QNKLFYITNADDSTKFQLVNDVMDELITSSARKE------------ 77 (318)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT-CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTS------------
T ss_pred hhccCCccc--cCCHHHHHHHHHHHHHHHhcCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhcc------------
Confidence 334555333 788777776665554 444 4566899999999999999999999963211000
Q ss_pred chhhhccCCCccEEEEccCCCc----------------------CHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHH
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTR----------------------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHA 515 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~----------------------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~ 515 (1342)
.....++.+|+.... ..+.++.++.... ...+...||++||+|.|. .
T Consensus 78 -------~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~--~ 146 (318)
T 3te6_A 78 -------LPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP--KAKKRKTLILIQNPENLL--S 146 (318)
T ss_dssp -------SCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC--GGGSCEEEEEEECCSSSC--C
T ss_pred -------CCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh--hccCCceEEEEecHHHhh--c
Confidence 001123444432211 1223333333320 012345699999999987 4
Q ss_pred HHHHHHhhc---CCCCcEEEEEEeCCCCC----ChHHHhccE--EEEEEcCCCHHHHHHHHHHHHHhcC-----------
Q psy13354 516 FNAMLKTLE---EPPKYIKFILATTEPQK----IPITVLSRC--IQFNLKKMLHHDIVNNLCYILNKEN----------- 575 (1342)
Q Consensus 516 ~~~Ll~~Le---~p~~~~vlIl~t~~~~k----l~~~L~sR~--~~i~~~~l~~~el~~~l~~~~~~~g----------- 575 (1342)
++.|+.+++ .....+++|+++|..+- +.++++||+ ..+.|+|++.+++.++++.+++...
T Consensus 147 q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~ 226 (318)
T 3te6_A 147 EKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKK 226 (318)
T ss_dssp THHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTC
T ss_pred chHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccc
Confidence 456665554 45567889999887753 344678887 7899999999999999999998742
Q ss_pred ------------------------CCcchhHHHHHHH---hcCCcHHHHHHHHHHHHhhc
Q psy13354 576 ------------------------IKFETSALNLIAT---GAQGSMRDALSLTDQAINYS 608 (1342)
Q Consensus 576 ------------------------~~i~~~al~~La~---~~~g~lr~a~~~L~kl~~~~ 608 (1342)
..+++++++++|+ ...||+|.+++.|+.+...+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 227 EMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp CEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 1479999999999 57999999999999988765
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=159.92 Aligned_cols=201 Identities=17% Similarity=0.253 Sum_probs=140.0
Q ss_pred ccccccchhhHHHHHHHHHcCC--------CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhh
Q psy13354 390 FNTLIGQNHISKSLINALDKKR--------LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVK 461 (1342)
Q Consensus 390 f~~lvGq~~~~~~L~~~l~~~~--------~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~ 461 (1342)
.++++||+.+++.+...+..+. ..+.++|+||+|||||++|+.+++.+.+.. .......|..+..+..
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~----~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE----EAMIRIDMTEYMEKHA 91 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG----GGEEEEEGGGCCSTTH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC----cceEEeeccccccccc
Confidence 3568999999999988887642 235799999999999999999999986421 0111122222222111
Q ss_pred hcc--CCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC-----------C
Q psy13354 462 IDN--GCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP-----------K 528 (1342)
Q Consensus 462 ~~~--~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~-----------~ 528 (1342)
... +..+. ..+......+.+..... ...+++|||++.++.+.++.|++.+++.. .
T Consensus 92 ~~~l~g~~~~--------~~~~~~~~~~~~~~~~~----~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 92 VSRLIGAPPG--------YVGYEEGGQLTEAVRRR----PYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHHCCCTT--------STTTTTCCHHHHHHHHC----SSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HHHhcCCCCc--------cccccccchHHHHHHhC----CCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 100 00000 00000001122222222 24699999999999999999999998753 3
Q ss_pred cEEEEEEeCC--------------------------CCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhc-------
Q psy13354 529 YIKFILATTE--------------------------PQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKE------- 574 (1342)
Q Consensus 529 ~~vlIl~t~~--------------------------~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~------- 574 (1342)
++++|+++|. ...+.+++.+|+ .++.|.|++.+++..++...+++.
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 6778999887 335667899999 899999999999999998877652
Q ss_pred --CCCcchhHHHHHHHhc---CCcHHHHHHHHHHHHh
Q psy13354 575 --NIKFETSALNLIATGA---QGSMRDALSLTDQAIN 606 (1342)
Q Consensus 575 --g~~i~~~al~~La~~~---~g~lr~a~~~L~kl~~ 606 (1342)
...+++++++.|++.. .|+.|.+.+.+++++.
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp TCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred CcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 4568999999999975 5999999999987654
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-13 Score=162.36 Aligned_cols=291 Identities=13% Similarity=0.050 Sum_probs=168.8
Q ss_pred ceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.|.+.++. ++ .+|.+.+++.+.+.. . ..+ ++. .++..+++++++++++..+.+++++||++|+.
T Consensus 54 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~-~~~------~~~---~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~ 122 (424)
T 2e7u_A 54 YLDYVMSWGPLILGHAHPKVLARVRETLER-G-LTF------GAP---SPLEVALAKKVKRAYPFVDLVRFVNSGTEATM 122 (424)
T ss_dssp EEESSGGGTTCTTCBTCHHHHHHHHHHHHT-C-SCC------SSC---CHHHHHHHHHHHHHCTTCCEEEEESSHHHHHH
T ss_pred EEEccccccccccCCCCHHHHHHHHHHHHh-C-CCC------CCC---CHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHH
Confidence 45655553 33 467799999888853 1 111 111 14455566688888842244555559999999
Q ss_pred HHHHH---ccCCCCEEEEeeccCCccchhhHHh-----------hhCCce----eEEEEecCCCCCCCCHHHHHHHHHh-
Q psy13354 104 AVFFS---VLNPGDTIMGMSLQEGGHLTHGMML-----------NMSGKW----FNSICYGLNKKEKIDYKKVEYLAKK- 164 (1342)
Q Consensus 104 ~al~a---l~~pGD~Vlv~~~~~~~~~s~~~~~-----------~~~g~~----~~~v~~~~~~~~~id~e~Le~~i~~- 164 (1342)
.++.+ +.+ ++.|++.+..+.++....... ...|.. ..++.++.+ |++++++.+++
T Consensus 123 ~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~ 196 (424)
T 2e7u_A 123 SALRLARGYTG-RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN-----DPEGLREVLKRR 196 (424)
T ss_dssp HHHHHHHHHHC-CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCC-----CHHHHHHHHHhC
Confidence 99986 444 577777665554432211100 011210 123334443 89999998874
Q ss_pred -cCCeEEEEcCCCC-Cc-ccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-
Q psy13354 165 -NKPKLIIAGASAY-SQ-YID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG- 233 (1342)
Q Consensus 165 -~~~~liv~~~s~~-~~-~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g- 233 (1342)
.++++|++.+.+. ++ ..+ +++|.++ ++||++||+||+|+ |+. .+.... ... ..|++ |+||++++
T Consensus 197 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~-~g~~~~~~~~~~~~di~--s~sK~l~~G 271 (424)
T 2e7u_A 197 GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFR-LAFGGATELLGLKPDLV--TLGKILGGG 271 (424)
T ss_dssp GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTT-SSTTHHHHHHTCCCSEE--EECGGGGTT
T ss_pred CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccc-cchhHHHHHhCCCcchh--hhhhhhhCC
Confidence 3456666654333 23 345 9999999 99999999999997 432 121100 011 24765 77899953
Q ss_pred CCeeEEEEechhHHHHhhccCCcc-ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEee
Q psy13354 234 PRGGFILMKKKYKKIINSAVFPGI-QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVS 308 (1342)
Q Consensus 234 p~GG~iv~~~~l~~~l~~~~~~~~-~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~ 308 (1342)
...|++++++++++.+......+. .+...++...+++.+..+...+ .+++.+++.++++++.+.|.+. ++....
T Consensus 272 ~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 350 (424)
T 2e7u_A 272 LPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE-NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTV 350 (424)
T ss_dssp SSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH-CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred cceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 234999999988877765211111 1112233444444444444322 1456788888888888888764 543111
Q ss_pred CCCCCeEEEEEccCCC-------------CCHHHHHHHHHHCCceeeec
Q psy13354 309 GGTKSHIILVDLRNKK-------------ITGKIAESILESANIICNKN 344 (1342)
Q Consensus 309 ~~~~~~~v~i~~~~~~-------------~~~~~~~~ll~~~GI~v~~~ 344 (1342)
. ..+.++|+.++... ...++...++ ++||.+.+.
T Consensus 351 ~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~ 397 (424)
T 2e7u_A 351 N-RVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPS 397 (424)
T ss_dssp E-EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSS
T ss_pred E-eeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEecc
Confidence 1 23568898886421 1234555565 569999864
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.7e-13 Score=160.56 Aligned_cols=276 Identities=12% Similarity=0.072 Sum_probs=157.7
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHH---ccCCCCE
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFS---VLNPGDT 115 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~a---l~~pGD~ 115 (1342)
.+|.+.+++.+.+.. . ..+ ++ ..+++.++++++++.++..+.+++++||++|+..++.+ +.++ +.
T Consensus 74 ~~~~v~~a~~~~~~~-~-~~~------~~---~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~~-~~ 141 (453)
T 2cy8_A 74 GHPRVNAAIAEALSH-G-VQY------AA---SHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGR-RM 141 (453)
T ss_dssp TCHHHHHHHHHHHTT-T-CSS------CS---SCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHCC-CE
T ss_pred CCHHHHHHHHHHHHh-C-CCC------CC---CCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCC-CE
Confidence 467799998888743 1 111 11 23677778889988885334555666999999999998 5554 67
Q ss_pred EEEeeccCCccchhhHH--------hhhCCce----eEEEEecCCCCCCCCHHHHHHHHHh--cCCeEEEEcCCCCC-c-
Q psy13354 116 IMGMSLQEGGHLTHGMM--------LNMSGKW----FNSICYGLNKKEKIDYKKVEYLAKK--NKPKLIIAGASAYS-Q- 179 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~--------~~~~g~~----~~~v~~~~~~~~~id~e~Le~~i~~--~~~~liv~~~s~~~-~- 179 (1342)
|++.+..+.++...... ....|.. ..++.++. .|++++++.+++ .++++|++.+.+++ +
T Consensus 142 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~ 216 (453)
T 2cy8_A 142 ILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHGSDIAAFIAEPVGSHFGV 216 (453)
T ss_dssp EEEECC----------------------------CGGGEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSEHHHHT
T ss_pred EEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCCCCCCCC
Confidence 77666544432211100 0011221 01233333 289999998875 24566766554332 3
Q ss_pred ccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-CCeeEEEEechhHHHHhh
Q psy13354 180 YID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG-PRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 180 ~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g-p~GG~iv~~~~l~~~l~~ 251 (1342)
..+ +++|.++|++||++||+||+|+ |+. .+.... ... .+|++ |+||++++ ..+|++++++++++.+..
T Consensus 217 ~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~-~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~ 292 (453)
T 2cy8_A 217 TPVSDSFLREGAELARQYGALFILDEVIS-GFR-VGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGREDVMGVLSR 292 (453)
T ss_dssp EECCHHHHHHHHHHHHHTTCEEEEECTTT-TTT-TCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTSSS
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccc-cCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechHHHHHHhcc
Confidence 345 9999999999999999999997 432 221100 011 24765 67799953 344999999988777654
Q ss_pred c--c---CCccccCCcHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEEEEEcc
Q psy13354 252 A--V---FPGIQGGPLMHVIAAKAVAFKEV-LKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSHIILVDLR 321 (1342)
Q Consensus 252 ~--~---~~~~~~~~~~~~~~Aaa~al~~~-l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v~i~~~ 321 (1342)
. . ....+ +. ++...+++.+..+. .. +.+.+++.++++++.+.|.+. ++..... ..+.++|+.++
T Consensus 293 ~~~~~~~~~~t~-~~-n~~~~aa~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~i~~~ 366 (453)
T 2cy8_A 293 GSDRKVLHQGTF-TG-NPITAAAAIAAIDTILE---DDVCAKINDLGQFAREAMNHLFARKGLNWLAY-GRFSGFHLMPG 366 (453)
T ss_dssp CC---------C-CC-CHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE-CCTTEEEEEET
T ss_pred ccCCCceeCCCC-CC-CHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE-EeeeEEEEEEe
Confidence 1 0 11112 22 23333333333333 22 235677788888888888663 5432222 34568888886
Q ss_pred C-----C------------C--CCHHHHHHHHHHCCceee
Q psy13354 322 N-----K------------K--ITGKIAESILESANIICN 342 (1342)
Q Consensus 322 ~-----~------------~--~~~~~~~~ll~~~GI~v~ 342 (1342)
. . . ...++...+++ +||.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv~v~ 405 (453)
T 2cy8_A 367 LPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGVDIG 405 (453)
T ss_dssp SCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTEECB
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHH-CCeEEe
Confidence 4 1 0 12356666665 599984
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-13 Score=160.97 Aligned_cols=233 Identities=12% Similarity=0.048 Sum_probs=156.9
Q ss_pred chHHHHHHHHHHHHHHHhCCCCc--eEecCCHHHHHHHHHHHccCC----CCEEEEeeccCCccchhhHHhhhCCceeEE
Q psy13354 69 KFIDLIEKIAINRLKKIFNAEAA--NVQPHSGSQANQAVFFSVLNP----GDTIMGMSLQEGGHLTHGMMLNMSGKWFNS 142 (1342)
Q Consensus 69 ~~~~~Le~~~~~~la~~~g~~~~--vi~~~sGs~A~~~al~al~~p----GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~ 142 (1342)
+....+++.+..++.+++|.+.. .++++++|.+..+++.+.+++ ++.|+++. .+|.+...++...|.....
T Consensus 94 ~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r---~aHkSv~kAl~l~Gl~p~~ 170 (450)
T 3bc8_A 94 SLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPR---IDQKSCFKSMVTAGFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEEC---CCCHHHHHHHHHTTCEEEE
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEEC---CcHHHHHHHHHHcCCeeEE
Confidence 33557888899999999998843 344546665444444444343 88888554 5888888899999986666
Q ss_pred EEec-CCCCCCCCHHHHHHHHHhc---CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC-C
Q psy13354 143 ICYG-LNKKEKIDYKKVEYLAKKN---KPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP-N 215 (1342)
Q Consensus 143 v~~~-~~~~~~id~e~Le~~i~~~---~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~-~ 215 (1342)
+... .++.+.+|++.+++++.++ .+.+|+.++++++ ...|+++|+++|++||+|++||+||+.........+ .
T Consensus 171 v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~ 250 (450)
T 3bc8_A 171 IENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQ 250 (450)
T ss_dssp ECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHH
T ss_pred EEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHH
Confidence 6432 2456889999999999764 3456777777776 467999999999999999999999985322110000 1
Q ss_pred CC--CCCcEEEecCCccCCCCCe-eEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy13354 216 PV--PFADFITSTTHKSLRGPRG-GFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKN 291 (1342)
Q Consensus 216 ~l--~~~Divv~S~sK~l~gp~G-G~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~ 291 (1342)
.+ +.+|+++.|.|||+.+|.| |++.. +++..+.+... .+...++ +|. ..++..+.....+++.+..++..++
T Consensus 251 a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~-~~g~~s~--Sps-L~l~~~l~~~G~~g~~~~i~~~~~~ 326 (450)
T 3bc8_A 251 GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM-YPGRASA--SPS-LDVLITLLSLGCSGYRKLLKERKEM 326 (450)
T ss_dssp HHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHH-SCSCBCS--HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHH-hhcCCcc--cHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 4579999999999989988 55554 34555555442 2222222 333 3334444444555677777777888
Q ss_pred HHHHHHHHHhC----CcEEee
Q psy13354 292 AKILSKILDQR----GIRIVS 308 (1342)
Q Consensus 292 a~~l~~~L~~~----g~~~~~ 308 (1342)
++++++.+.+. |+.+..
T Consensus 327 a~~l~~~l~~~~~~~g~~~l~ 347 (450)
T 3bc8_A 327 FVYLSTQLKKLAEAHNERLLQ 347 (450)
T ss_dssp HHHHHHHHHHHHHHTTCCBCC
T ss_pred HHHHHHHHHhhHHhcCceecC
Confidence 99999888663 565543
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-13 Score=162.39 Aligned_cols=198 Identities=18% Similarity=0.198 Sum_probs=142.1
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
.|..+++|..|++++|++..++.+...+.....+| +||+||||+|||++|+.+++.+.+.. .|+..
T Consensus 169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~-~LL~G~pG~GKT~la~~la~~l~~~~---------~p~~l---- 234 (468)
T 3pxg_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNN-PVLIGEPGVGKTAIAEGLAQQIINNE---------VPEIL---- 234 (468)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCE-EEEESCTTTTTHHHHHHHHHHHHSSC---------SCTTT----
T ss_pred HHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCC-eEEECCCCCCHHHHHHHHHHHHHhCC---------CChhh----
Confidence 46788999999999999999999999998866554 79999999999999999999986421 01000
Q ss_pred hhhccCCCccEEEEccC-CCcC--HHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 460 VKIDNGCFMDYIEMDAA-STRG--INEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~-~~~~--~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
....++.++.+ ...+ ...+..+++.+.. ....|++|| .+.+.++.|+..++.. .+.+|.++
T Consensus 235 ------~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~----~~~~iLfiD----~~~~a~~~L~~~L~~g--~v~vI~at 298 (468)
T 3pxg_A 235 ------RDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQ----AGNIILFID----AAIDASNILKPSLARG--ELQCIGAT 298 (468)
T ss_dssp ------SSCCEECC----------CTTHHHHHHHHHT----CCCCEEEEC----C--------CCCTTSS--SCEEEEEC
T ss_pred ------cCCeEEEeeCCccccchHHHHHHHHHHHHHh----cCCeEEEEe----CchhHHHHHHHhhcCC--CEEEEecC
Confidence 01123333332 1111 1345666766654 245699999 4455778888888854 67788888
Q ss_pred CCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----cCCCcchhHHHHHHHhcCC------cHHHHHHHH
Q psy13354 537 TEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----ENIKFETSALNLIATGAQG------SMRDALSLT 601 (1342)
Q Consensus 537 ~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----~g~~i~~~al~~La~~~~g------~lr~a~~~L 601 (1342)
+... .+.+++.+||..+.|.+|+.++...++...+.+ +++.++++++..+++.+.+ .++.+++++
T Consensus 299 ~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll 378 (468)
T 3pxg_A 299 TLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (468)
T ss_dssp CTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred CHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHH
Confidence 8776 577899999999999999999999999988776 7899999999999987653 356788888
Q ss_pred HHHHhh
Q psy13354 602 DQAINY 607 (1342)
Q Consensus 602 ~kl~~~ 607 (1342)
+.+...
T Consensus 379 ~~a~~~ 384 (468)
T 3pxg_A 379 DEAGSK 384 (468)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876653
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-14 Score=163.19 Aligned_cols=214 Identities=17% Similarity=0.230 Sum_probs=147.4
Q ss_pred hccCCCCccccccchhhHHHHHHHHH-----------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccC
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINALD-----------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQ 451 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l~-----------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~ 451 (1342)
.++.+..|++++|++.+++.+.+.+. ....++++||+||+|||||++|+++++.+..... ..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~-------~v 75 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF-------SM 75 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC-------CC
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE-------Ee
Confidence 45678899999999999999888775 2345667999999999999999999999864211 11
Q ss_pred CCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH---------------HH
Q psy13354 452 PCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH---------------AF 516 (1342)
Q Consensus 452 ~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~---------------~~ 516 (1342)
.| ........+ . +...++.+++.+... .+.+|+|||+|.+... .+
T Consensus 76 ~~---~~~~~~~~~----------~---~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~ 135 (268)
T 2r62_A 76 GG---SSFIEMFVG----------L---GASRVRDLFETAKKQ----APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTL 135 (268)
T ss_dssp CS---CTTTTSCSS----------S---CSSSSSTTHHHHHHS----CSCEEEESCGGGTTC----------CCCSCSST
T ss_pred ch---HHHHHhhcc----------h---HHHHHHHHHHHHHhc----CCeEEEEeChhhhcccccccccCCCchhHHHHH
Confidence 11 111110000 0 011122333333321 3469999999988542 24
Q ss_pred HHHHHhhcCCC---CcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhc
Q psy13354 517 NAMLKTLEEPP---KYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGA 590 (1342)
Q Consensus 517 ~~Ll~~Le~p~---~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~ 590 (1342)
+.|+..++... ..+++|+++|.++.+.+++.+ |+ ..+.+++|+.++..++++..++..... ++..++.+++.+
T Consensus 136 ~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~ 214 (268)
T 2r62_A 136 NQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLT 214 (268)
T ss_dssp TTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSS
T ss_pred HHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHc
Confidence 56777776543 347788888888888888888 65 678999999999999998887655432 333467778877
Q ss_pred CC-cHHHHHHHHHHHHhhcC----CCCCHHHHHHHhccC
Q psy13354 591 QG-SMRDALSLTDQAINYSS----EKITLNSMQEMLSII 624 (1342)
Q Consensus 591 ~g-~lr~a~~~L~kl~~~~~----~~It~e~V~~~v~~~ 624 (1342)
.| +.+++.+.++.+..++. ..|+.+++.+++...
T Consensus 215 ~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 215 AGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp CSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 76 56788889988877763 359999998877543
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=147.95 Aligned_cols=203 Identities=15% Similarity=0.207 Sum_probs=133.8
Q ss_pred CCccccccchhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCC
Q psy13354 388 SNFNTLIGQNHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGC 466 (1342)
Q Consensus 388 ~~f~~lvGq~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 466 (1342)
.+|++++|+...++.+.+.+.. ...+..+||+||+|||||++|+.+++.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~------------------------- 57 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ------------------------- 57 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT-------------------------
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC-------------------------
Confidence 3799999999998888776653 23345689999999999999999998765210
Q ss_pred CccEEEEccCCCcCHHHHHH-HHHH--------Hhh-cC-c-cCCceEEEeccCccCCHHHHHHHHHhhcCC--------
Q psy13354 467 FMDYIEMDAASTRGINEMAQ-LLEQ--------TIY-AP-I-NARYKIYVIDEVHMLTHHAFNAMLKTLEEP-------- 526 (1342)
Q Consensus 467 ~~d~~~i~~~~~~~~~~i~~-ii~~--------~~~-~p-~-~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p-------- 526 (1342)
..++.++++... .+.+.. ++.. ... .. + .....+++|||++.++.+.++.|++++++.
T Consensus 58 -~~~~~v~~~~~~-~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 58 -GPFISLNCAALN-ENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp -SCEEEEEGGGSC-HHHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC-
T ss_pred -CCeEEEecCCCC-hhHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCc
Confidence 124455544321 111111 1000 000 00 0 123459999999999999999999999853
Q ss_pred ---CCcEEEEEEeCCC-------CCChHHHhccE--EEEEEcCCCH--HHHHHHHH----HHHHhcCC----CcchhHHH
Q psy13354 527 ---PKYIKFILATTEP-------QKIPITVLSRC--IQFNLKKMLH--HDIVNNLC----YILNKENI----KFETSALN 584 (1342)
Q Consensus 527 ---~~~~vlIl~t~~~-------~kl~~~L~sR~--~~i~~~~l~~--~el~~~l~----~~~~~~g~----~i~~~al~ 584 (1342)
+.++.+|+++|.. ..+.+.+.+|+ ..+.++++.+ +++..++. +..++.+. .+++++++
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~ 215 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE 215 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH
Confidence 3467788888874 24567888998 5688888875 56665544 44444554 68999999
Q ss_pred HHHHhc-CCcHHHHHHHHHHHHhhcC-CCCCHHHH
Q psy13354 585 LIATGA-QGSMRDALSLTDQAINYSS-EKITLNSM 617 (1342)
Q Consensus 585 ~La~~~-~g~lr~a~~~L~kl~~~~~-~~It~e~V 617 (1342)
.|.... .||+|.+.+.++.++..+. ..|+.+++
T Consensus 216 ~L~~~~~~gn~reL~~~l~~~~~~~~~~~i~~~~l 250 (265)
T 2bjv_A 216 TLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDI 250 (265)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHHCCSSSCBCCC
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCCCcCcHHHc
Confidence 998875 9999999999999877664 44776655
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=156.15 Aligned_cols=260 Identities=13% Similarity=0.078 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHhCCCCc--eEecCCHHHHHHHHHHHccCC----CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC
Q psy13354 75 EKIAINRLKKIFNAEAA--NVQPHSGSQANQAVFFSVLNP----GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN 148 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~--vi~~~sGs~A~~~al~al~~p----GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~ 148 (1342)
+..+.+|++.. |.+.+ .+.++++|.++.+++.+.+++ ||.|++ +..+|.+....+...|....+++...+
T Consensus 119 n~l~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIv---pRn~HKSv~kAliL~Gl~Pv~V~p~~d 194 (501)
T 3hl2_A 119 NSLVLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIW---PRIDQKSCFKSMITAGFEPVVIENVLE 194 (501)
T ss_dssp HHHHHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEE---ECCCCHHHHHHHHHTTCEEEEECEEEE
T ss_pred HHHHHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEE---ecchHHHHHHHHHHcCCeEEEEeeeec
Confidence 34455566665 88733 555647776777777777663 499995 447888988888899986555543222
Q ss_pred -CCCCCCHHHHHHHHHhcC---CeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CCCCCCC--CC
Q psy13354 149 -KKEKIDYKKVEYLAKKNK---PKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GEYPNPV--PF 219 (1342)
Q Consensus 149 -~~~~id~e~Le~~i~~~~---~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~~l--~~ 219 (1342)
+...+|++.+++++.++. ..+++.++++|. ...++++|+++|++||++++||+||+.-.... ......+ ..
T Consensus 195 ~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~Gr 274 (501)
T 3hl2_A 195 GDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGR 274 (501)
T ss_dssp TTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSC
T ss_pred ccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCC
Confidence 457789999999998753 233444555554 44699999999999999999999997533111 1000111 13
Q ss_pred CcEEEecCCccCCCCCeeEEE-Ee-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q psy13354 220 ADFITSTTHKSLRGPRGGFIL-MK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297 (1342)
Q Consensus 220 ~Divv~S~sK~l~gp~GG~iv-~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~ 297 (1342)
+|+++.|.||++..|.||+++ .+ +++.+.+... .++..++ + ....+..+++.+..++++++.++..+++++|.+
T Consensus 275 AD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~-yPGr~S~--S-psldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~ 350 (501)
T 3hl2_A 275 IDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKM-YPGRASA--S-PSLDVLITLLSLGSNGYKKLLKERKEMFSYLSN 350 (501)
T ss_dssp CCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHT-SCSCBCS--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecccccceeecCceEEEeCCHHHHHHHHHh-CCCCCCC--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999888886555 44 4666666543 3333322 2 344456677777777899999999999999999
Q ss_pred HHHhC----CcEEeeCCCCCeEEEEEccCCCC-----CHHHHHHHHHHCCceeee
Q psy13354 298 ILDQR----GIRIVSGGTKSHIILVDLRNKKI-----TGKIAESILESANIICNK 343 (1342)
Q Consensus 298 ~L~~~----g~~~~~~~~~~~~v~i~~~~~~~-----~~~~~~~ll~~~GI~v~~ 343 (1342)
.|++. |-++...+.+.--+.+.+..... ..++-..|..+ +|.-..
T Consensus 351 ~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r-~vsG~R 404 (501)
T 3hl2_A 351 QIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTR-QVSGAR 404 (501)
T ss_dssp HHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHT-TCCSCE
T ss_pred HHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhc-CCCcce
Confidence 99883 44443322122223344433211 12455566655 665443
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=157.19 Aligned_cols=191 Identities=15% Similarity=0.201 Sum_probs=142.2
Q ss_pred ccCCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccC
Q psy13354 384 KYRPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQ 451 (1342)
Q Consensus 384 k~~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~ 451 (1342)
...+..|++++|++.+++.|.+.+.. -..+..+||+||+|||||++|+++++.+++
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~------------ 264 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA------------ 264 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS------------
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC------------
Confidence 45678999999999999999888754 356678999999999999999999998753
Q ss_pred CCCCCcchhhhccCCCccEEEEccCC----CcC--HHHHHHHHHHHhhcCccCCceEEEeccCccCCH-----------H
Q psy13354 452 PCGKCSVCVKIDNGCFMDYIEMDAAS----TRG--INEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-----------H 514 (1342)
Q Consensus 452 ~c~~~~~~~~~~~~~~~d~~~i~~~~----~~~--~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-----------~ 514 (1342)
.++.++++. ..+ ...++.++..+.. ..+.+|+|||+|.+.. .
T Consensus 265 -----------------~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~----~~p~iLfLDEId~l~~~~~~~~~~~~~~ 323 (489)
T 3hu3_A 265 -----------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTHGEVERR 323 (489)
T ss_dssp -----------------EEEEEEHHHHHTSCTTHHHHHHHHHHHHHHH----TCSEEEEEESHHHHCBCTTSCCCHHHHH
T ss_pred -----------------CEEEEEchHhhhhhcchhHHHHHHHHHHHHh----cCCcEEEecchhhhccccccccchHHHH
Confidence 244444321 111 2245555555543 2346999999986632 4
Q ss_pred HHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh
Q psy13354 515 AFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG 589 (1342)
Q Consensus 515 ~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~ 589 (1342)
.++.|+..++. .+.++++|.+||.++.+.+++.+ |+ ..+.+..|+.++..+++..+++..... .+..+..+++.
T Consensus 324 ~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~ 402 (489)
T 3hu3_A 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANE 402 (489)
T ss_dssp HHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHT
T ss_pred HHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHH
Confidence 67888888873 45678899999999999999998 66 679999999999999999888766554 33346778888
Q ss_pred cCC-cHHHHHHHHHHHHhhc
Q psy13354 590 AQG-SMRDALSLTDQAINYS 608 (1342)
Q Consensus 590 ~~g-~lr~a~~~L~kl~~~~ 608 (1342)
+.| +.+++.+++..+...+
T Consensus 403 t~g~s~~dL~~L~~~A~~~a 422 (489)
T 3hu3_A 403 THGHVGADLAALCSEAALQA 422 (489)
T ss_dssp CTTCCHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH
Confidence 776 5667777777766554
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-12 Score=152.01 Aligned_cols=202 Identities=23% Similarity=0.248 Sum_probs=137.8
Q ss_pred ccccchhhHHHHHHHHH----c-------------------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCC
Q psy13354 392 TLIGQNHISKSLINALD----K-------------------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGI 442 (1342)
Q Consensus 392 ~lvGq~~~~~~L~~~l~----~-------------------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~ 442 (1342)
.++||+.+++.|..++. . ...++.+||+||+|||||++|+.+++.+++.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~-- 99 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIP-- 99 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC--
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCC--
Confidence 58999999999988872 1 1234569999999999999999999998531
Q ss_pred CCCCCcccCCCCCCcchhhhccCCCccEEEEccCCC--------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH
Q psy13354 443 DGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAST--------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH 514 (1342)
Q Consensus 443 ~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~--------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~ 514 (1342)
++.+++... .....+..++.............+++|||++.+...
T Consensus 100 ---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 100 ---------------------------IAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL 152 (376)
T ss_dssp ---------------------------EEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---
T ss_pred ---------------------------EEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhh
Confidence 222222110 011223334333211111234569999999999876
Q ss_pred --------------HHHHHHHhhcCCC---------------------CcEEEEEEeCC---------------------
Q psy13354 515 --------------AFNAMLKTLEEPP---------------------KYIKFILATTE--------------------- 538 (1342)
Q Consensus 515 --------------~~~~Ll~~Le~p~---------------------~~~vlIl~t~~--------------------- 538 (1342)
.++.|++.++... .++++|++++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~ 232 (376)
T 1um8_A 153 SENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQE 232 (376)
T ss_dssp -----------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCS
T ss_pred cCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCch
Confidence 8899999999641 34567777651
Q ss_pred --------------------CCCChHHHhccE-EEEEEcCCCHHHHHHHHHH----H-------HHh--cCCCcchhHHH
Q psy13354 539 --------------------PQKIPITVLSRC-IQFNLKKMLHHDIVNNLCY----I-------LNK--ENIKFETSALN 584 (1342)
Q Consensus 539 --------------------~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~----~-------~~~--~g~~i~~~al~ 584 (1342)
...+.+.+.+|+ .++.|++++.+++..++.. . +.. .++.+++++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 312 (376)
T 1um8_A 233 KMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIK 312 (376)
T ss_dssp SCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHH
T ss_pred hhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHH
Confidence 012457899999 8999999999999998862 1 111 24579999999
Q ss_pred HHHHhcC---CcHHHHHHHHHHHHhh-----cC---C--CCCHHHHHHHhc
Q psy13354 585 LIATGAQ---GSMRDALSLTDQAINY-----SS---E--KITLNSMQEMLS 622 (1342)
Q Consensus 585 ~La~~~~---g~lr~a~~~L~kl~~~-----~~---~--~It~e~V~~~v~ 622 (1342)
+|++.+. |+.|.+.+.+++++.. .. + .||.++|++...
T Consensus 313 ~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 313 EIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCC
Confidence 9999865 9999999999986653 11 1 288888887554
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.3e-12 Score=154.12 Aligned_cols=206 Identities=19% Similarity=0.239 Sum_probs=143.8
Q ss_pred CCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
.+.+|++++|++.++..+.+.+.. .+++..++|+||+|||||+++++++..+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~--------------- 90 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV--------------- 90 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---------------
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------
Confidence 567899999999999888777631 245678999999999999999999998752
Q ss_pred CCcchhhhccCCCccEEEEccCCCc--CHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------HHHHH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTR--GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------------HAFNA 518 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~--~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------------~~~~~ 518 (1342)
.++.++++... ........+..+........+.+++|||++.+.. ...+.
T Consensus 91 --------------~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~ 156 (499)
T 2dhr_A 91 --------------PFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ 156 (499)
T ss_dssp --------------CEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH
T ss_pred --------------CEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH
Confidence 23444433211 1111222222222222222346999999987731 24567
Q ss_pred HHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhH-HHHHHHhcCC
Q psy13354 519 MLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSA-LNLIATGAQG 592 (1342)
Q Consensus 519 Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~a-l~~La~~~~g 592 (1342)
|+..++.. ...+++|.++|.++.+.+++.+ |+ ..+.+..|+.++..++++.+++ +..+++++ +..++..+.|
T Consensus 157 LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G 234 (499)
T 2dhr_A 157 LLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPG 234 (499)
T ss_dssp HHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCS
T ss_pred HHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCC
Confidence 77777633 3456666777888888888887 44 6899999999999999876654 44555554 8889999988
Q ss_pred cH-HHHHHHHHHHHhhcC----CCCCHHHHHHHhc
Q psy13354 593 SM-RDALSLTDQAINYSS----EKITLNSMQEMLS 622 (1342)
Q Consensus 593 ~l-r~a~~~L~kl~~~~~----~~It~e~V~~~v~ 622 (1342)
+. +++.+.++.+..++. ..|+.+++.+++.
T Consensus 235 ~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~ 269 (499)
T 2dhr_A 235 FVGADLENLLNEAALLAAREGRRKITMKDLEEAAD 269 (499)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 87 899999999877653 3488888887663
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=138.07 Aligned_cols=204 Identities=21% Similarity=0.273 Sum_probs=142.5
Q ss_pred hccCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccC
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQ 451 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~ 451 (1342)
..+.+.+|++++|+++++..+.+.... -.++..++|+||+|+|||+++++++..+..
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~------------ 75 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV------------ 75 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC------------
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC------------
Confidence 456677999999999998877766531 134567999999999999999999998752
Q ss_pred CCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-------------
Q psy13354 452 PCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT------------- 512 (1342)
Q Consensus 452 ~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~------------- 512 (1342)
.++.+++.. ......+..+++.+.. ..+.++++||++.+.
T Consensus 76 -----------------~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~i~~~Deid~l~~~~~~~~~~~~~~ 134 (254)
T 1ixz_A 76 -----------------PFITASGSDFVEMFVGVGAARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDE 134 (254)
T ss_dssp -----------------CEEEEEHHHHHHSCTTHHHHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHH
T ss_pred -----------------CEEEeeHHHHHHHHhhHHHHHHHHHHHHHHh----cCCeEEEehhhhhhhcccCccccccchH
Confidence 123333210 0111234445544421 234699999998652
Q ss_pred -HHHHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhH-HHH
Q psy13354 513 -HHAFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSA-LNL 585 (1342)
Q Consensus 513 -~~~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~a-l~~ 585 (1342)
....+.++..++.. ....+++.+++.++.+.+++.+ |+ ..+.++.|+.++..++++..++ +..+++++ +..
T Consensus 135 ~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~ 212 (254)
T 1ixz_A 135 REQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLAL 212 (254)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHH
Confidence 11245666666543 2345666678888888899988 55 7899999999999999987764 34455544 889
Q ss_pred HHHhcCCcH-HHHHHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 586 IATGAQGSM-RDALSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 586 La~~~~g~l-r~a~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
+++.+.|+. +++.+.++++..++ ...||.+++++++
T Consensus 213 la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 213 LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 999998865 88989998877654 2359999998875
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.8e-12 Score=155.95 Aligned_cols=302 Identities=15% Similarity=0.079 Sum_probs=168.0
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc-------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL------- 110 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~------- 110 (1342)
.+|.+.+|+.+.+... ..++.. .++. ....+++++++++++++++.. +.+++++||++|+..+++++.
T Consensus 80 ~~p~v~~A~~~~~~~~-~~~~~~--~~~~-~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~ 155 (472)
T 1ohv_A 80 SHPALVKLVQQPQNVS-TFINRP--ALGI-LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKE 155 (472)
T ss_dssp TCHHHHHHHHCGGGHH-HHHCCC--CTTT-SCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhc-cccccc--cccc-ccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhc
Confidence 4677999988865321 111111 1221 222367776666777766422 345556699999999998773
Q ss_pred -C-----------------CC---CEEEEeeccCCccchhhHHhh------hCCce---eEEEEecCC--C---C--C--
Q psy13354 111 -N-----------------PG---DTIMGMSLQEGGHLTHGMMLN------MSGKW---FNSICYGLN--K---K--E-- 151 (1342)
Q Consensus 111 -~-----------------pG---D~Vlv~~~~~~~~~s~~~~~~------~~g~~---~~~v~~~~~--~---~--~-- 151 (1342)
+ || ++|++....+.++......+. ..+.. +..++++.. . . +
T Consensus 156 ~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 235 (472)
T 1ohv_A 156 RGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQ 235 (472)
T ss_dssp HTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHH
T ss_pred cCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccch
Confidence 1 46 899987766655433322111 11111 012233210 0 0 0
Q ss_pred ---CCCHHHHHHHHHhc-----CCeEEEEcCC-CCCc-ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCC-
Q psy13354 152 ---KIDYKKVEYLAKKN-----KPKLIIAGAS-AYSQ-YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPN- 215 (1342)
Q Consensus 152 ---~id~e~Le~~i~~~-----~~~liv~~~s-~~~~-~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~- 215 (1342)
..|+++|++++++. ++++|++.+. ++.+ ..+ +++|.++|++||++||+||+|. +|.. +.+..
T Consensus 236 ~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~--g~~~~~ 313 (472)
T 1ohv_A 236 QEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGST--GKFWAH 313 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT--SSSSGG
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCC--CCchhc
Confidence 23688899988762 4567777542 2233 345 9999999999999999999997 3322 11111
Q ss_pred -CCC---CCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy13354 216 -PVP---FADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKN 291 (1342)
Q Consensus 216 -~l~---~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~ 291 (1342)
... .+|++ |+||++.| ||+++ ++++. .+.......+++ .+...++++. +.++.+.+ +.+.+++.++
T Consensus 314 ~~~gv~~~~Di~--t~sK~~l~--GG~~~-~~~~~-~~~~~~~~~T~~-~~~~~~aaa~-aal~~~~~--~~~~~~~~~~ 383 (472)
T 1ohv_A 314 EHWGLDDPADVM--TFSKKMMT--GGFFH-KEEFR-PNAPYRIFNTWL-GDPSKNLLLA-EVINIIKR--EDLLSNAAHA 383 (472)
T ss_dssp GGGCCSSCCSEE--EECGGGSS--EEEEE-CGGGS-CSSSSSSCCSSS-SCHHHHHHHH-HHHHHHHH--TTHHHHHHHH
T ss_pred cccCCCCCCCEE--EEcccccc--CCccC-chhhc-ccccccccCccC-ccHHHHHHHH-HHHHHHHh--CCHHHHHHHH
Confidence 111 15766 56699413 68877 65542 111111112222 2333444444 33443321 2356788888
Q ss_pred HHHHHHHHHhC--C----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 292 AKILSKILDQR--G----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 292 a~~l~~~L~~~--g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++++.+.|.+. + +.... ..+.++++.++.......++..+++ +||.+.+.. .+.+|++++.
T Consensus 384 ~~~l~~~L~~l~~~~~~~v~~~~--~~g~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~g----------~~~iRi~~~~ 450 (472)
T 1ohv_A 384 GKVLLTGLLDLQARYPQFISRVR--GRGTFCSFDTPDESIRNKLISIARN-KGVMLGGCG----------DKSIRFRPTL 450 (472)
T ss_dssp HHHHHHHHHHHHHHCTTTCEEEE--EETTEEEEECSSHHHHHHHHHHHHH-TTEECEEET----------TTEEEECCCT
T ss_pred HHHHHHHHHHHHhhCCCcEEeec--CCceEEEEEeCChhHHHHHHHHHHH-CCeEEecCC----------CCEEEEECCC
Confidence 88888888764 1 22222 2355677776542223467777775 599998631 2469998887
Q ss_pred cccc
Q psy13354 366 ITTR 369 (1342)
Q Consensus 366 ~~t~ 369 (1342)
.++.
T Consensus 451 ~~t~ 454 (472)
T 1ohv_A 451 VFRD 454 (472)
T ss_dssp TCCH
T ss_pred CCCH
Confidence 7664
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=161.89 Aligned_cols=213 Identities=16% Similarity=0.192 Sum_probs=138.2
Q ss_pred CccccccchhhHHHHHHHHHc-----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 389 NFNTLIGQNHISKSLINALDK-----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~-----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
..++++|+++++..+.+.+.- ...+..++|+||||+|||++++.+++.+.... -...|....
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~-------~~i~~~~~~------ 145 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF-------VRISLGGVR------ 145 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE-------EEECCCC--------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe-------EEEEecccc------
Confidence 356799999999888665431 12345799999999999999999999986310 011111100
Q ss_pred cCCCccEEEEccCCCcCH----HHHHHHHHHHhhcCccCCceEEEeccCccCCHH----HHHHHHHhhcCCC--------
Q psy13354 464 NGCFMDYIEMDAASTRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH----AFNAMLKTLEEPP-------- 527 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~~~----~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~----~~~~Ll~~Le~p~-------- 527 (1342)
+..++.......+ ..+.+.+.. .. ....++++||++.+..+ .++.|++.++...
T Consensus 146 -----~~~~~~g~~~~~ig~~~~~~~~~~~~---a~--~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~ 215 (543)
T 3m6a_A 146 -----DESEIRGHRRTYVGAMPGRIIQGMKK---AG--KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHY 215 (543)
T ss_dssp -----------------------CHHHHHHT---TC--SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSS
T ss_pred -----hhhhhhhHHHHHhccCchHHHHHHHH---hh--ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeeccc
Confidence 0000000000001 112222221 11 12339999999999766 4588899887532
Q ss_pred -------CcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHH-----hc-----CCCcchhHHHHHHHhc
Q psy13354 528 -------KYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILN-----KE-----NIKFETSALNLIATGA 590 (1342)
Q Consensus 528 -------~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~-----~~-----g~~i~~~al~~La~~~ 590 (1342)
.++++|+++|..+.++++|++|+.++.|++|+.++...++..++. .. ++.++++++..+++..
T Consensus 216 ~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 216 IEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp SCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred CCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 567889999999999999999999999999999999999888763 23 4568999999988754
Q ss_pred --CCcHHHHHHHHHHHHhhcC----------CCCCHHHHHHHhccC
Q psy13354 591 --QGSMRDALSLTDQAINYSS----------EKITLNSMQEMLSII 624 (1342)
Q Consensus 591 --~g~lr~a~~~L~kl~~~~~----------~~It~e~V~~~v~~~ 624 (1342)
.|++|.+.+.+++++..+. ..||.++++++++..
T Consensus 296 ~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 296 TREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred ChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 3799999888887654321 127777777777543
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=8.1e-12 Score=141.51 Aligned_cols=180 Identities=16% Similarity=0.266 Sum_probs=124.3
Q ss_pred cccccchhhHHHHHH-------HHH--cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhh
Q psy13354 391 NTLIGQNHISKSLIN-------ALD--KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVK 461 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~-------~l~--~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~ 461 (1342)
..++|+...++.+.. .++ ....++.+||+||+|||||++|+++++.+++
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~---------------------- 90 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF---------------------- 90 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC----------------------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC----------------------
Confidence 456777665544433 443 2455678999999999999999999999763
Q ss_pred hccCCCccEEEEccCC-------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccC----------CHHHHHHHHHhhc
Q psy13354 462 IDNGCFMDYIEMDAAS-------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHML----------THHAFNAMLKTLE 524 (1342)
Q Consensus 462 ~~~~~~~d~~~i~~~~-------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L----------~~~~~~~Ll~~Le 524 (1342)
.++.++.++ ......++.+++.+.. ....+|+|||++.+ .....+.|...++
T Consensus 91 -------~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~ 159 (272)
T 1d2n_A 91 -------PFIKICSPDKMIGFSETAKCQAMKKIFDDAYK----SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLK 159 (272)
T ss_dssp -------SEEEEECGGGCTTCCHHHHHHHHHHHHHHHHT----SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTT
T ss_pred -------CEEEEeCHHHhcCCchHHHHHHHHHHHHHHHh----cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhc
Confidence 133333321 0111344555554432 44679999999986 4556677777777
Q ss_pred C---CCCcEEEEEEeCCCCCChH-HHhccE-EEEEEcCCCH-HHHHHHHHHHHHhcCCCcchhHHHHHHHhcCC-----c
Q psy13354 525 E---PPKYIKFILATTEPQKIPI-TVLSRC-IQFNLKKMLH-HDIVNNLCYILNKENIKFETSALNLIATGAQG-----S 593 (1342)
Q Consensus 525 ~---p~~~~vlIl~t~~~~kl~~-~L~sR~-~~i~~~~l~~-~el~~~l~~~~~~~g~~i~~~al~~La~~~~g-----~ 593 (1342)
. ++..+++|.+++.++.+.+ .+.+|+ ..+.+++++. +++..++.+ . ..++++++..+++.+.| +
T Consensus 160 ~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~-~~~~~~~~~~l~~~~~g~~~~g~ 234 (272)
T 1d2n_A 160 KAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----L-GNFKDKERTTIAQQVKGKKVWIG 234 (272)
T ss_dssp CCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----H-TCSCHHHHHHHHHHHTTSEEEEC
T ss_pred CccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh----c-CCCCHHHHHHHHHHhcCCCcccc
Confidence 5 3445667777777766665 677885 8899998887 666666543 2 24789999999999988 9
Q ss_pred HHHHHHHHHHHHhhc
Q psy13354 594 MRDALSLTDQAINYS 608 (1342)
Q Consensus 594 lr~a~~~L~kl~~~~ 608 (1342)
+|.+++.++.+...+
T Consensus 235 ir~l~~~l~~a~~~~ 249 (272)
T 1d2n_A 235 IKKLLMLIEMSLQMD 249 (272)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999998776543
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=8.7e-11 Score=141.47 Aligned_cols=242 Identities=14% Similarity=0.058 Sum_probs=147.7
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--CCCCEE
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL--NPGDTI 116 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~--~pGD~V 116 (1342)
-.|.+.+|+.+++..... +...+....+ +.+.+++.+..-+.+.|++|||+|++.+++... ...++|
T Consensus 104 ~hp~v~~Av~~q~~~~~~-------~~~~~~~~~~----lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~i 172 (454)
T 4ao9_A 104 SAPEIRDAVIEAMQGGIN-------LTGHNLLEGR----LARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKI 172 (454)
T ss_dssp CCHHHHHHHHHHHHTCSC-------CCSEESSHHH----HHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCHHHHHHHHHHHhcCCC-------ccCCcHHHHH----HHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeE
Confidence 467899999888853211 1122333334 445788877655666777799999999998763 234567
Q ss_pred EEeeccCCcc-chhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCC--eEEEEcC--CCCC----cccCHHHHH
Q psy13354 117 MGMSLQEGGH-LTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKP--KLIIAGA--SAYS----QYIDFERFY 187 (1342)
Q Consensus 117 lv~~~~~~~~-~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~--~liv~~~--s~~~----~~~~l~~I~ 187 (1342)
+...-.|.++ ..........+.......++.+ |++.+++.+.++.+ +.|++.+ ++-+ ....+++|.
T Consensus 173 i~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr 247 (454)
T 4ao9_A 173 VVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALR 247 (454)
T ss_dssp EEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHH
T ss_pred EEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHH
Confidence 7654443332 2111111122233345555665 89999998886543 4466533 1111 222499999
Q ss_pred HHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCC-CeeEEEEechhHHHHhhccCCccc--cCCcH
Q psy13354 188 HIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGP-RGGFILMKKKYKKIINSAVFPGIQ--GGPLM 263 (1342)
Q Consensus 188 ~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~~l~~~~~~~~~--~~~~~ 263 (1342)
++|++||++||+||++. |-.+.......+. .+|+++.+ |.++|. +.|++++++++++.+.....+... +...+
T Consensus 248 ~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gn 324 (454)
T 4ao9_A 248 ESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNN 324 (454)
T ss_dssp HHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTC
T ss_pred HHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCC
Confidence 99999999999999986 5332211000111 25888655 998543 338899999999887653222211 12235
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Q psy13354 264 HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ 301 (1342)
Q Consensus 264 ~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~ 301 (1342)
|..+|++.+.++.+.+ ++..+++.++.++|++.|++
T Consensus 325 Pla~AAala~L~~l~~--~~~~~~~~~~g~~l~~~L~~ 360 (454)
T 4ao9_A 325 VMTMAAGYAGLTKLFT--PEAAGALAERGEALRARLNA 360 (454)
T ss_dssp HHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cChhHHHHHHHHHHHHHHHH
Confidence 6777777777777642 34567788888888888865
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-13 Score=166.08 Aligned_cols=293 Identities=11% Similarity=0.031 Sum_probs=167.8
Q ss_pred cCceeeeecCC--CC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh-CCCCceEecCCHHH
Q psy13354 27 NNNIELIASEN--YT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF-NAEAANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n--~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~-g~~~~vi~~~sGs~ 100 (1342)
++.|.+.++.. .+ +|.+.+|+.+.+..... + . ... +...++++++++++ +.+.+ ++++||++
T Consensus 100 ~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~--~---~--~~~----~~~~~Lae~L~~~~p~~~~v-~~~nSGse 167 (465)
T 2yky_A 100 HAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLN--L---S--TQT----ENEALFAEAVCDRFPSIDLV-RFTNSGTE 167 (465)
Confidence 45566666543 23 46688888877743111 0 1 112 33444555888888 45454 55559999
Q ss_pred HHHHHHHHcc--CCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEecCCCCCCCCHHHHHHHHHh--cCCeEEEEcCC
Q psy13354 101 ANQAVFFSVL--NPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK--NKPKLIIAGAS 175 (1342)
Q Consensus 101 A~~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~--~~~~liv~~~s 175 (1342)
|++.++..+. ..+++|++....+.++...... ....|....++.++++ |++++++++++ .++++|++.+.
T Consensus 168 A~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~-----d~~~l~~~l~~~~~~~aavi~epv 242 (465)
T 2yky_A 168 ANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYN-----DVEGTADLLKRHGHDCAAILVEPM 242 (465)
Confidence 9999998752 3458888766554333211110 0111221123333433 78899988874 34566666442
Q ss_pred -CCCc-----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCC-CeeEEEEechhHH
Q psy13354 176 -AYSQ-----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGP-RGGFILMKKKYKK 247 (1342)
Q Consensus 176 -~~~~-----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~ 247 (1342)
++++ ...+++|.++|++||++||+||+|. +..+......... .+|++ +++|++++. ..||+++++++++
T Consensus 243 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i~~ 319 (465)
T 2yky_A 243 LGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDLME 319 (465)
Confidence 2232 2249999999999999999999998 5322110011111 14654 788999441 1299999999998
Q ss_pred HHhhc--c---CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEee-CCCCCeEEEEE
Q psy13354 248 IINSA--V---FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVS-GGTKSHIILVD 319 (1342)
Q Consensus 248 ~l~~~--~---~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~-~~~~~~~v~i~ 319 (1342)
.+... . ..+.++ .++...+++.+.++.+.+ +.+.+++.++.+++++.|.+. ...+.. -+..+.++++.
T Consensus 320 ~l~~~~~g~~~~~~T~~--~npla~aAa~aaL~~l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~ 395 (465)
T 2yky_A 320 RFDPARDGAFAHAGTFN--NNILTMSAGHAALTQIYT--RQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIH 395 (465)
Confidence 88651 1 112222 244555555555555432 245678888888888888764 122111 12345677776
Q ss_pred ccC-C------------CCCHHHHHHHHHHCCceeeec
Q psy13354 320 LRN-K------------KITGKIAESILESANIICNKN 344 (1342)
Q Consensus 320 ~~~-~------------~~~~~~~~~ll~~~GI~v~~~ 344 (1342)
+.+ . .....++..+++ +||++.+.
T Consensus 396 ~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~ 432 (465)
T 2yky_A 396 FSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPR 432 (465)
Confidence 653 1 113456666775 59999864
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-11 Score=136.75 Aligned_cols=202 Identities=21% Similarity=0.272 Sum_probs=140.9
Q ss_pred cCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
..+.+|++++|+++++..+.+.... -.++..++|+||+|+|||+++++++..+..
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-------------- 99 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-------------- 99 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC--------------
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC--------------
Confidence 3567899999999998887766531 134567999999999999999999998752
Q ss_pred CCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC--------------H
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------------H 513 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------------~ 513 (1342)
.++.++... ......+..+++.+.. ..+.++++||++.+. .
T Consensus 100 ---------------~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~i~~iDeid~l~~~~~~~~~~~~~~~~ 160 (278)
T 1iy2_A 100 ---------------PFITASGSDFVEMFVGVGAARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDERE 160 (278)
T ss_dssp ---------------CEEEEEHHHHHHSTTTHHHHHHHHHHHHHHT----SCSEEEEEETHHHHHCC--------CHHHH
T ss_pred ---------------CEEEecHHHHHHHHhhHHHHHHHHHHHHHHh----cCCcEEehhhhHhhhcccccccCCcchHHH
Confidence 123333211 0111234455554432 234699999998652 1
Q ss_pred HHHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhH-HHHHH
Q psy13354 514 HAFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSA-LNLIA 587 (1342)
Q Consensus 514 ~~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~a-l~~La 587 (1342)
...+.++..++.. ....+++.+++.++.+.+++.+ |+ ..+.+++|+.++..++++.+++. ..+++++ +..++
T Consensus 161 ~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la 238 (278)
T 1iy2_A 161 QTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLA 238 (278)
T ss_dssp HHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHH
Confidence 2234555555543 2345667778888889999887 55 68999999999999999877653 4555544 88899
Q ss_pred HhcCCcH-HHHHHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 588 TGAQGSM-RDALSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 588 ~~~~g~l-r~a~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
..+.|+. +++.+.++++..++ ...||.+++++++
T Consensus 239 ~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 239 KRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 9998877 78888888877654 2459999998875
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-11 Score=159.53 Aligned_cols=217 Identities=20% Similarity=0.230 Sum_probs=154.1
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
.|..+++|..|++++|++..++.+.+.+...... .+||+||||+|||++++.+++.+.+... |. ....
T Consensus 175 ~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~-~vlL~G~~GtGKT~la~~la~~l~~~~v---------~~-~~~~- 242 (758)
T 1r6b_X 175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKN-NPLLVGESGVGKTAIAEGLAWRIVQGDV---------PE-VMAD- 242 (758)
T ss_dssp BHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSC-EEEEECCTTSSHHHHHHHHHHHHHHTCS---------CG-GGTT-
T ss_pred hHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCC-CeEEEcCCCCCHHHHHHHHHHHHHhCCC---------Ch-hhcC-
Confidence 4677899999999999999999999999876544 5799999999999999999999875310 00 0000
Q ss_pred hhhccCCCccEEEEccC------CCc--CHHHHHHHHHHHhhcCccCCceEEEeccCccC---------CHHHHHHHHHh
Q psy13354 460 VKIDNGCFMDYIEMDAA------STR--GINEMAQLLEQTIYAPINARYKIYVIDEVHML---------THHAFNAMLKT 522 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~------~~~--~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L---------~~~~~~~Ll~~ 522 (1342)
..++.++.+ ... ....++.+++.+.. ....+++|||+|.+ ..+..+.|..+
T Consensus 243 --------~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~----~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~ 310 (758)
T 1r6b_X 243 --------CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL 310 (758)
T ss_dssp --------CEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS----SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC
T ss_pred --------CEEEEEcHHHHhccccccchHHHHHHHHHHHHHh----cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHH
Confidence 112222211 111 12345566655533 24579999999988 23345566666
Q ss_pred hcCCCCcEEEEEEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----cCCCcchhHHHHHHHhcCC-
Q psy13354 523 LEEPPKYIKFILATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----ENIKFETSALNLIATGAQG- 592 (1342)
Q Consensus 523 Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----~g~~i~~~al~~La~~~~g- 592 (1342)
+++ ..+.+|++++.++ ...+++.+|+..+.|.+|+.++..+++...+.. +++.++++++..+++.+.+
T Consensus 311 l~~--~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~ 388 (758)
T 1r6b_X 311 LSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_dssp SSS--CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HhC--CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Confidence 665 3566788877532 456789999999999999999999999887765 6889999999999987654
Q ss_pred -----cHHHHHHHHHHHHhhc--------CCCCCHHHHHHHhc
Q psy13354 593 -----SMRDALSLTDQAINYS--------SEKITLNSMQEMLS 622 (1342)
Q Consensus 593 -----~lr~a~~~L~kl~~~~--------~~~It~e~V~~~v~ 622 (1342)
.+..++..++.+.... ...|+.++|.+++.
T Consensus 389 i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~ 431 (758)
T 1r6b_X 389 INDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVA 431 (758)
T ss_dssp CTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHH
T ss_pred cccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHH
Confidence 3556777777765432 23488888887764
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=158.36 Aligned_cols=199 Identities=16% Similarity=0.225 Sum_probs=136.9
Q ss_pred cccccchhhHHHHHHHHHcC--------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 391 NTLIGQNHISKSLINALDKK--------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~~--------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
..++||+.+++.+..++... +..+.+||+||+|||||++|+.+++.+.+. .....|........+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~-------~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE-------LLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCE-------EEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-------EEEEechhhcchhhH
Confidence 56999999999988887532 233479999999999999999999998521 001111111000000
Q ss_pred ccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC-----------CcEE
Q psy13354 463 DNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP-----------KYIK 531 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~-----------~~~v 531 (1342)
. .++.. .....+.+....+.+.+... .+.||+|||++.+..+.++.|++.+++.. .+++
T Consensus 531 ~-----~l~g~-~~g~~g~~~~~~l~~~~~~~----~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 600 (758)
T 1r6b_X 531 S-----RLIGA-PPGYVGFDQGGLLTDAVIKH----PHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_dssp S-----SSCCC-CSCSHHHHHTTHHHHHHHHC----SSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred h-----hhcCC-CCCCcCccccchHHHHHHhC----CCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence 0 00000 00011111222233333333 35799999999999999999999998642 4677
Q ss_pred EEEEeCCCC-------------------------CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhc---------CC
Q psy13354 532 FILATTEPQ-------------------------KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKE---------NI 576 (1342)
Q Consensus 532 lIl~t~~~~-------------------------kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~---------g~ 576 (1342)
+|+++|... .+.+.+.+|+ .++.|++++.+++..++...+.+. .+
T Consensus 601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~ 680 (758)
T 1r6b_X 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSL 680 (758)
T ss_dssp EEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 899988643 4567899999 889999999999999999887642 35
Q ss_pred CcchhHHHHHHHhc---CCcHHHHHHHHHHHHh
Q psy13354 577 KFETSALNLIATGA---QGSMRDALSLTDQAIN 606 (1342)
Q Consensus 577 ~i~~~al~~La~~~---~g~lr~a~~~L~kl~~ 606 (1342)
.++++++++|++.. +++.|.+.+.+++++.
T Consensus 681 ~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 681 EVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp EECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred EeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 78999999999976 5568888888877653
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.3e-11 Score=136.18 Aligned_cols=213 Identities=15% Similarity=0.244 Sum_probs=137.0
Q ss_pred cccccchhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCcc
Q psy13354 391 NTLIGQNHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMD 469 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d 469 (1342)
++++|+...++.+.+.+.. ......+||+||+|||||++|+.+++...... ......+|...........
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~----~~~v~v~~~~~~~~l~~~~----- 72 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSD----RPLVTLNCAALNESLLESE----- 72 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSS----SCCCEEECSSCCHHHHHHH-----
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccC----CCeEEEeCCCCChHHHHHH-----
Confidence 4689998888888777754 23344589999999999999999999764211 1111222322211000000
Q ss_pred EEEEccCCCcCHH-HHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC-----------CCcEEEEEEeC
Q psy13354 470 YIEMDAASTRGIN-EMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP-----------PKYIKFILATT 537 (1342)
Q Consensus 470 ~~~i~~~~~~~~~-~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p-----------~~~~vlIl~t~ 537 (1342)
++........+.. .....++.+ +..+++|||++.++.+.++.|++.+++. +.++.+|++||
T Consensus 73 lfg~~~g~~tg~~~~~~g~~~~a-------~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn 145 (304)
T 1ojl_A 73 LFGHEKGAFTGADKRREGRFVEA-------DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATH 145 (304)
T ss_dssp HTCCCSSCCC---CCCCCHHHHH-------TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEES
T ss_pred hcCccccccCchhhhhcCHHHhc-------CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecC
Confidence 0000000000000 000111111 2348999999999999999999999875 24678888888
Q ss_pred CC-------CCChHHHhccE--EEEEEcCCC--HHHHHHHHHHHHH----hcC---CCcchhHHHHHHHhc-CCcHHHHH
Q psy13354 538 EP-------QKIPITVLSRC--IQFNLKKML--HHDIVNNLCYILN----KEN---IKFETSALNLIATGA-QGSMRDAL 598 (1342)
Q Consensus 538 ~~-------~kl~~~L~sR~--~~i~~~~l~--~~el~~~l~~~~~----~~g---~~i~~~al~~La~~~-~g~lr~a~ 598 (1342)
.. ..+.+.|.+|+ ..+.++|+. .+++..++...++ +.+ ..+++++++.|..+. .||+|.+.
T Consensus 146 ~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~ 225 (304)
T 1ojl_A 146 RDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELE 225 (304)
T ss_dssp SCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHH
T ss_pred ccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHH
Confidence 75 23556788886 667888887 4666655554443 333 579999999999987 99999999
Q ss_pred HHHHHHHhhcC-CCCCHHHHHH
Q psy13354 599 SLTDQAINYSS-EKITLNSMQE 619 (1342)
Q Consensus 599 ~~L~kl~~~~~-~~It~e~V~~ 619 (1342)
+.++.++..+. ..|+.+++..
T Consensus 226 ~~l~~~~~~~~~~~i~~~~l~~ 247 (304)
T 1ojl_A 226 NAIERAVVLLTGEYISERELPL 247 (304)
T ss_dssp HHHHHHHHHCCSSSBCGGGSCG
T ss_pred HHHHHHHHhCCCCcccHHhhhh
Confidence 99999888775 4588777653
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.1e-12 Score=158.47 Aligned_cols=233 Identities=17% Similarity=0.211 Sum_probs=151.2
Q ss_pred hhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC---------
Q psy13354 382 ARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP--------- 452 (1342)
Q Consensus 382 ~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~--------- 452 (1342)
..+|+|+.|++++||+.+++.+..++..+. .++|+||+|+|||++++.+++.+.+... +.....
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~----~~~~~~~~~~~~~~p 104 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQKR---HVLLIGEPGTGKSMLGQAMAELLPTETL----EDILVFPNPEDENMP 104 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHTSCCSSC----EEEEEECCTTCTTSC
T ss_pred cccccccccceEECchhhHhhccccccCCC---EEEEEeCCCCCHHHHHHHHhccCCcccC----CeEEEeCCcccccCC
Confidence 468999999999999999999999999883 5899999999999999999998764210 000000
Q ss_pred -CCCCcchhhh------------------------ccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcC------
Q psy13354 453 -CGKCSVCVKI------------------------DNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAP------ 495 (1342)
Q Consensus 453 -c~~~~~~~~~------------------------~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p------ 495 (1342)
|..|..|... .....+++..-+..... ......+++......+
T Consensus 105 ~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~ 184 (604)
T 3k1j_A 105 RIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGL 184 (604)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----C
T ss_pred cEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCc
Confidence 1111111100 00001111111110000 0011222322111110
Q ss_pred -------------ccCCceEEEeccCccCCHHHHHHHHHhhcCC---------------------CCcEEEEEEeCCC--
Q psy13354 496 -------------INARYKIYVIDEVHMLTHHAFNAMLKTLEEP---------------------PKYIKFILATTEP-- 539 (1342)
Q Consensus 496 -------------~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p---------------------~~~~vlIl~t~~~-- 539 (1342)
..++..+++|||++.++...++.|++.|++. |.++.+|+++|..
T Consensus 185 ~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~ 264 (604)
T 3k1j_A 185 GTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV 264 (604)
T ss_dssp CCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHH
T ss_pred cccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHH
Confidence 0123459999999999999999999999731 2467788988875
Q ss_pred CCChHHHhccE----EEEEEcCC---CHHHHHHHHHHHHHhc-----CCCcchhHHHHHHHhc---CC-------cHHHH
Q psy13354 540 QKIPITVLSRC----IQFNLKKM---LHHDIVNNLCYILNKE-----NIKFETSALNLIATGA---QG-------SMRDA 597 (1342)
Q Consensus 540 ~kl~~~L~sR~----~~i~~~~l---~~~el~~~l~~~~~~~-----g~~i~~~al~~La~~~---~g-------~lr~a 597 (1342)
..+.++|.+|| ..++|... ..+.+..++...++.. ...+++++++.|++.+ .| ++|.+
T Consensus 265 ~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l 344 (604)
T 3k1j_A 265 DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDL 344 (604)
T ss_dssp HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHH
T ss_pred hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHH
Confidence 57889999998 45666543 4455666665555432 2579999999999865 45 69999
Q ss_pred HHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 598 LSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 598 ~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
.++++.+..++ ...|+.++|.+++
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~ 372 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAV 372 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHH
Confidence 99999877664 2359999888877
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.7e-12 Score=161.26 Aligned_cols=198 Identities=17% Similarity=0.185 Sum_probs=141.5
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
.|..+++|..|++++|++..++.+...+......| +||+||||||||++|+.+++.+.+.... .....
T Consensus 169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~-vLL~G~pGtGKT~la~~la~~l~~~~~p----~~l~~------- 236 (758)
T 3pxi_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNN-PVLIGEPGVGKTAIAEGLAQQIINNEVP----EILRD------- 236 (758)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCE-EEEESCTTTTTHHHHHHHHHHHHSSCSC----TTTSS-------
T ss_pred HHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCC-eEEECCCCCCHHHHHHHHHHHHhcCCCC----hhhcC-------
Confidence 46788999999999999999999999998866555 7999999999999999999998642100 00000
Q ss_pred hhhccCCCccEEEEccC-CCc--CHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 460 VKIDNGCFMDYIEMDAA-STR--GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~-~~~--~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
..++.++.. ... ....++.+++.+.. ..+.+++|| .+.+..+.|+..++. ..+.+|++|
T Consensus 237 --------~~~~~~~~g~~~~G~~e~~l~~~~~~~~~----~~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at 298 (758)
T 3pxi_A 237 --------KRVMTLDMGTKYRGEFEDRLKKVMDEIRQ----AGNIILFID----AAIDASNILKPSLAR--GELQCIGAT 298 (758)
T ss_dssp --------CCEECC----------CTTHHHHHHHHHT----CCCCEEEEC----C--------CCCTTS--SSCEEEEEC
T ss_pred --------CeEEEecccccccchHHHHHHHHHHHHHh----cCCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCC
Confidence 112222221 101 11246667766654 345699999 444567888888885 467788888
Q ss_pred CCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----cCCCcchhHHHHHHHhcC------CcHHHHHHHH
Q psy13354 537 TEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----ENIKFETSALNLIATGAQ------GSMRDALSLT 601 (1342)
Q Consensus 537 ~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----~g~~i~~~al~~La~~~~------g~lr~a~~~L 601 (1342)
|... .+.+++.+||..+.|++|+.+++..++...+.. +++.++++++..+++.+. ..+++++.++
T Consensus 299 ~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll 378 (758)
T 3pxi_A 299 TLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (758)
T ss_dssp CTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHH
Confidence 8877 578899999999999999999999999977765 688999999999998754 3457788888
Q ss_pred HHHHhh
Q psy13354 602 DQAINY 607 (1342)
Q Consensus 602 ~kl~~~ 607 (1342)
+.+...
T Consensus 379 ~~a~~~ 384 (758)
T 3pxi_A 379 DEAGSK 384 (758)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876644
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=131.21 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=115.3
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
..|..+++|..|++++|++..++.+.+.+..+.. +.++|+||+|+|||++++.+++.+.+..... .
T Consensus 10 ~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~-~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~------~------- 75 (195)
T 1jbk_A 10 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTK-NNPVLIGEPGVGKTAIVEGLAQRIINGEVPE------G------- 75 (195)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTCSCG------G-------
T ss_pred HHHHHHHhhccccccccchHHHHHHHHHHhcCCC-CceEEECCCCCCHHHHHHHHHHHHHhCCCch------h-------
Confidence 3578899999999999999999999999988654 4589999999999999999999987521000 0
Q ss_pred hhhhccCCCccEEEEccCC----CcCH----HHHHHHHHHHhhcCccCCceEEEeccCccCCH--------HHHHHHHHh
Q psy13354 459 CVKIDNGCFMDYIEMDAAS----TRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------HAFNAMLKT 522 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~----~~~~----~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------~~~~~Ll~~ 522 (1342)
.....++.++... .... ..+.+++..+.. ...+.+++|||++.+.. ...+.|..+
T Consensus 76 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~ 146 (195)
T 1jbk_A 76 ------LKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA 146 (195)
T ss_dssp ------GTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHH---STTTEEEEEETGGGGTT------CCCCHHHHHHH
T ss_pred ------hcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhh---cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHh
Confidence 0011233333211 1111 234444443332 23456999999998852 225667777
Q ss_pred hcCCCCcEEEEEEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHH
Q psy13354 523 LEEPPKYIKFILATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNL 567 (1342)
Q Consensus 523 Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l 567 (1342)
++.. .+.+|++++... .+.+++.+|+..+.+.+|+.++..+++
T Consensus 147 ~~~~--~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 147 LARG--ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTT--SCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred hccC--CeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 7664 566788887765 677899999999999999999987764
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=160.70 Aligned_cols=186 Identities=18% Similarity=0.270 Sum_probs=135.3
Q ss_pred ccccccchhhHHHHHHHHHcCC--------CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhh
Q psy13354 390 FNTLIGQNHISKSLINALDKKR--------LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVK 461 (1342)
Q Consensus 390 f~~lvGq~~~~~~L~~~l~~~~--------~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~ 461 (1342)
..+++||+.+++.+..++.... ....+||+||+|||||++|+++++.+....
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~-------------------- 549 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE-------------------- 549 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCT--------------------
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--------------------
Confidence 3679999999999988886432 112699999999999999999999985311
Q ss_pred hccCCCccEEEEccCCCcCH--HHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcC-----------CCC
Q psy13354 462 IDNGCFMDYIEMDAASTRGI--NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEE-----------PPK 528 (1342)
Q Consensus 462 ~~~~~~~d~~~i~~~~~~~~--~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~-----------p~~ 528 (1342)
..++.++++..... .....+.+..... .+.+|+|||++.++.+.++.|++.+++ ...
T Consensus 550 ------~~~i~i~~s~~~~~~~~~~~~l~~~~~~~----~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 619 (758)
T 3pxi_A 550 ------ESMIRIDMSEYMEKHSTSGGQLTEKVRRK----PYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFR 619 (758)
T ss_dssp ------TCEEEEEGGGGCSSCCCC---CHHHHHHC----SSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCT
T ss_pred ------cceEEEechhcccccccccchhhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccC
Confidence 12444444321110 0011112222222 345999999999999999999999986 345
Q ss_pred cEEEEEEeCCCCC------------ChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhc---------CCCcchhHHHHH
Q psy13354 529 YIKFILATTEPQK------------IPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKE---------NIKFETSALNLI 586 (1342)
Q Consensus 529 ~~vlIl~t~~~~k------------l~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~---------g~~i~~~al~~L 586 (1342)
++++|++||.... +.+.+.+|+ .++.|++++.+++..++...+... .+.++++++++|
T Consensus 620 ~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l 699 (758)
T 3pxi_A 620 NTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKV 699 (758)
T ss_dssp TCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHH
T ss_pred CeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHH
Confidence 7889999986543 668899999 999999999999999988877652 457899999999
Q ss_pred HHh---cCCcHHHHHHHHHHHH
Q psy13354 587 ATG---AQGSMRDALSLTDQAI 605 (1342)
Q Consensus 587 a~~---~~g~lr~a~~~L~kl~ 605 (1342)
++. ..|+.|.+.+.+++++
T Consensus 700 ~~~~~~~~~~~R~L~~~i~~~v 721 (758)
T 3pxi_A 700 AEEGVDLEYGARPLRRAIQKHV 721 (758)
T ss_dssp HGGGCCTTTTTTTHHHHHHHHT
T ss_pred HHhCCCCCCCChHHHHHHHHHH
Confidence 885 4688888888887654
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=162.00 Aligned_cols=205 Identities=19% Similarity=0.188 Sum_probs=143.1
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
..|..+++|..|++++|++..++.+.+.+..+...+ ++|+||||+|||++++.+++.+.+... +.
T Consensus 158 ~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~-vlL~G~pG~GKT~la~~la~~l~~~~~--------------p~ 222 (854)
T 1qvr_A 158 IDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNN-PVLIGEPGVGKTAIVEGLAQRIVKGDV--------------PE 222 (854)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCC-CEEEECTTSCHHHHHHHHHHHHHHTCS--------------CT
T ss_pred HhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCc-eEEEcCCCCCHHHHHHHHHHHHhcCCC--------------ch
Confidence 457889999999999999999999999998876554 799999999999999999999864210 00
Q ss_pred hhhhccCCCccEEEEccCCCc--------CHHHHHHHHHHHhhcCccCCceEEEeccCccCC--------HHHHHHHHHh
Q psy13354 459 CVKIDNGCFMDYIEMDAASTR--------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------HHAFNAMLKT 522 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~--------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------~~~~~~Ll~~ 522 (1342)
+. ....++.++.+... ....+..++..+... ..+.|++|||+|.+. .+..+.|..+
T Consensus 223 ~l-----~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~ 294 (854)
T 1qvr_A 223 GL-----KGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQS---QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPA 294 (854)
T ss_dssp TS-----TTCEEEEECC-----------CHHHHHHHHHHHHHTT---CSSEEEEECCC-------------------HHH
T ss_pred hh-----cCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhc---CCCeEEEEecHHHHhccCCccchHHHHHHHHHH
Confidence 00 01234444433211 122355666655432 245699999999885 3456678888
Q ss_pred hcCCCCcEEEEEEeCCCC----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHH----hcCCCcchhHHHHHHHhcCC--
Q psy13354 523 LEEPPKYIKFILATTEPQ----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILN----KENIKFETSALNLIATGAQG-- 592 (1342)
Q Consensus 523 Le~p~~~~vlIl~t~~~~----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~----~~g~~i~~~al~~La~~~~g-- 592 (1342)
++.. .+.+|++++... .+.+++.+||..+.+++|+.++...++...+. .+++.++++++..+++.+.+
T Consensus 295 l~~~--~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i 372 (854)
T 1qvr_A 295 LARG--ELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYI 372 (854)
T ss_dssp HHTT--CCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHC
T ss_pred HhCC--CeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhc
Confidence 8764 566788877553 35679999998899999999999999987665 35889999999999998744
Q ss_pred ----cHHHHHHHHHHHHhhc
Q psy13354 593 ----SMRDALSLTDQAINYS 608 (1342)
Q Consensus 593 ----~lr~a~~~L~kl~~~~ 608 (1342)
.+++++.+++.+....
T Consensus 373 ~~~~lp~kai~lldea~a~~ 392 (854)
T 1qvr_A 373 TERRLPDKAIDLIDEAAARL 392 (854)
T ss_dssp CSSCTHHHHHHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHH
Confidence 3788888888876554
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-11 Score=154.17 Aligned_cols=187 Identities=15% Similarity=0.197 Sum_probs=137.5
Q ss_pred CCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
...+|+++.|.+.+++.|++.+.- -+.+.++|||||||||||++|+++|+++++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-------------- 264 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------------- 264 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC--------------
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--------------
Confidence 345899999999999999888741 146778999999999999999999998873
Q ss_pred CCCcchhhhccCCCccEEEEccCC----C--cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------HHHH
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAS----T--RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------HHAF 516 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~----~--~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~~~~ 516 (1342)
.++.+++++ . .+...++++++.+.. ..+.||+|||+|.+. ....
T Consensus 265 ---------------~~~~v~~~~l~sk~~gese~~lr~lF~~A~~----~~PsIIfIDEiDal~~~r~~~~~~~~~riv 325 (806)
T 3cf2_A 265 ---------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTHGEVERRIV 325 (806)
T ss_dssp ---------------EEEEEEHHHHHSSCTTHHHHHHHHHHHHHTT----SCSEEEEEESGGGTCCTTTTCCCTTHHHHH
T ss_pred ---------------eEEEEEhHHhhcccchHHHHHHHHHHHHHHH----cCCeEEEEehhcccccccCCCCChHHHHHH
Confidence 356665432 1 122357777776643 345699999999873 1245
Q ss_pred HHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcC
Q psy13354 517 NAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQ 591 (1342)
Q Consensus 517 ~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~ 591 (1342)
+.|+..++.. ...+++|.+||+++.+++++++ |+ ..++++.|+.++..++++.++++.... ++..+..|++.+.
T Consensus 326 ~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~ 404 (806)
T 3cf2_A 326 SQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETH 404 (806)
T ss_dssp HHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCC
T ss_pred HHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcC
Confidence 6777777643 3468888999999999999998 77 789999999999999998766554332 2334778888876
Q ss_pred C-cHHHHHHHHHHHHh
Q psy13354 592 G-SMRDALSLTDQAIN 606 (1342)
Q Consensus 592 g-~lr~a~~~L~kl~~ 606 (1342)
| ...++.+++..+..
T Consensus 405 GfsgaDL~~Lv~eA~~ 420 (806)
T 3cf2_A 405 GHVGADLAALCSEAAL 420 (806)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5 55666666655543
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-11 Score=162.81 Aligned_cols=202 Identities=19% Similarity=0.277 Sum_probs=142.7
Q ss_pred CccccccchhhHHHHHHHHHcCC--------CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchh
Q psy13354 389 NFNTLIGQNHISKSLINALDKKR--------LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~--------~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~ 460 (1342)
.+++++||+.+++.+..++.... ..+.+||+||+|||||++|+.+++.+.+.. .......|..+..+.
T Consensus 556 l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~----~~~i~i~~~~~~~~~ 631 (854)
T 1qvr_A 556 LHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE----EAMIRIDMTEYMEKH 631 (854)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG----GGEEEECTTTCCSSG
T ss_pred HhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC----CcEEEEechhccchh
Confidence 35679999999999988886432 225799999999999999999999996421 122334455544443
Q ss_pred hhccC--CCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC-----------
Q psy13354 461 KIDNG--CFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP----------- 527 (1342)
Q Consensus 461 ~~~~~--~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~----------- 527 (1342)
..... ..+.++ +.+....+.+.+...| +.+|+|||++.++.+.++.|++.+++..
T Consensus 632 ~~s~l~g~~~~~~--------G~~~~g~l~~~~~~~~----~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 632 AVSRLIGAPPGYV--------GYEEGGQLTEAVRRRP----YSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGGGC----------------------CHHHHHHHCS----SEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred HHHHHcCCCCCCc--------CccccchHHHHHHhCC----CeEEEEecccccCHHHHHHHHHHhccCceECCCCCEecc
Confidence 32221 111111 1111122333333333 4699999999999999999999999753
Q ss_pred CcEEEEEEeCC--------------------------CCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhc------
Q psy13354 528 KYIKFILATTE--------------------------PQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKE------ 574 (1342)
Q Consensus 528 ~~~vlIl~t~~--------------------------~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~------ 574 (1342)
.++++|++||. ...+.+.+.+|+ .++.|.|++.+++..++...+++.
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~ 779 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAE 779 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 36778998886 224557888999 888999999999999988777631
Q ss_pred ---CCCcchhHHHHHHHhc---CCcHHHHHHHHHHHHh
Q psy13354 575 ---NIKFETSALNLIATGA---QGSMRDALSLTDQAIN 606 (1342)
Q Consensus 575 ---g~~i~~~al~~La~~~---~g~lr~a~~~L~kl~~ 606 (1342)
.+.++++++++|++.+ .|+.|.+.+.+++++.
T Consensus 780 ~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 780 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp TTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred CCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 3569999999999976 4999999999887653
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-11 Score=135.54 Aligned_cols=118 Identities=23% Similarity=0.354 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHcccCeeEEecccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcc
Q psy13354 805 DRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFS 884 (1342)
Q Consensus 805 d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~ 884 (1342)
||..|.+.+++.+++.+++++++.+|+++..+++++.+|.+.+|.++.||.||+|||+|++..+++|......|+.|..+
T Consensus 66 ~~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~ 145 (232)
T 2cul_A 66 RVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEAS 145 (232)
T ss_dssp CHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEEC
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccc
Confidence 88999999999999989999998899999999999999999999899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCccccc------cCCCcccccCccccccceeecCC
Q psy13354 885 TTSLAKRLKELQLSHGRLK------TGTPPRIDKRTIDFSKMEEQIGD 926 (1342)
Q Consensus 885 s~~l~~~l~~~g~~~~~~~------~~~~~r~~~~si~~~~~~~~~~d 926 (1342)
+..|+..|++.|+++.|++ +|+|| .+|+|+.+..+++|
T Consensus 146 ~~~l~~~l~~~g~~~~~~~~~~~~~~g~p~----~~~~~~~~~~~~~~ 189 (232)
T 2cul_A 146 YPDLLEDLSRLGFRFVEREGEVPETPSTPG----YRVRYLAFHPEEWE 189 (232)
T ss_dssp CSHHHHHHHHTTCCEEEEEEEEC-----CC----EEEEEEEECGGGEE
T ss_pred hhhhCHHHHhCCCeEEccccccCcCCCCCC----ccCchhhcccCCCC
Confidence 9999999999999999998 79999 68999999999988
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.2e-11 Score=127.56 Aligned_cols=155 Identities=21% Similarity=0.220 Sum_probs=107.6
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
.|..+++|..|++++|++..++.+.+.+..+... .++|+||+|+|||++++.+++.+.+... +.
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~-~vll~G~~G~GKT~la~~~~~~~~~~~~---------~~------ 74 (187)
T 2p65_A 11 DLTALARAGKLDPVIGRDTEIRRAIQILSRRTKN-NPILLGDPGVGKTAIVEGLAIKIVQGDV---------PD------ 74 (187)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSC-EEEEESCGGGCHHHHHHHHHHHHHTTCS---------CT------
T ss_pred HHHHHHhccccchhhcchHHHHHHHHHHhCCCCC-ceEEECCCCCCHHHHHHHHHHHHHhcCC---------cc------
Confidence 4778899999999999999999999999876544 5799999999999999999999864210 00
Q ss_pred hhhccCCCccEEEEccCC----CcCH----HHHHHHHHHHhhcCccCCceEEEeccCccCC---------HHHHHHHHHh
Q psy13354 460 VKIDNGCFMDYIEMDAAS----TRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLT---------HHAFNAMLKT 522 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~----~~~~----~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~---------~~~~~~Ll~~ 522 (1342)
......++.++... .... ..+.+++..+... ..+.+++|||++.+. .+..+.|...
T Consensus 75 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~ 147 (187)
T 2p65_A 75 ----SLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDA---EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPM 147 (187)
T ss_dssp ----TTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHT---TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHH
T ss_pred ----hhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhc---CCceEEEEeCHHHhcccccccccchHHHHHHHHH
Confidence 00011233333211 0111 2244444444332 345699999999885 3456677777
Q ss_pred hcCCCCcEEEEEEeCCCC-----CChHHHhccEEEEEEcCCC
Q psy13354 523 LEEPPKYIKFILATTEPQ-----KIPITVLSRCIQFNLKKML 559 (1342)
Q Consensus 523 Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~ 559 (1342)
+++ ..+++|++++.+. .+.+++.+||..+.+.+|+
T Consensus 148 ~~~--~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 148 LAR--GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHT--TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred Hhc--CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 776 3566788887654 5778999999989988774
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-11 Score=140.94 Aligned_cols=201 Identities=23% Similarity=0.302 Sum_probs=133.7
Q ss_pred ccccchhhHHHHHHHHHc------------C--CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 392 TLIGQNHISKSLINALDK------------K--RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 392 ~lvGq~~~~~~L~~~l~~------------~--~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
.++||+.+++.+..++.. + ..+..+||+||||||||++|+++++.++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~------------------ 77 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV------------------ 77 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC------------------
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC------------------
Confidence 379999999999888831 1 13456999999999999999999999863
Q ss_pred chhhhccCCCccEEEEccCCCcC--------HHHHHHHHHHHhhcCccCCceEEEeccCccCCHH--------------H
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRG--------INEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH--------------A 515 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~--------~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~--------------~ 515 (1342)
.++.++++.... ...+..++..+..........+++|||++.+... .
T Consensus 78 -----------~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~ 146 (363)
T 3hws_A 78 -----------PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGV 146 (363)
T ss_dssp -----------CEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHH
T ss_pred -----------CEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHH
Confidence 244444432110 1123333333211111134569999999988644 7
Q ss_pred HHHHHHhhcCC---------------------CCcEEEEEEeCCC----------CC-----------------------
Q psy13354 516 FNAMLKTLEEP---------------------PKYIKFILATTEP----------QK----------------------- 541 (1342)
Q Consensus 516 ~~~Ll~~Le~p---------------------~~~~vlIl~t~~~----------~k----------------------- 541 (1342)
++.|++.|+.. ..+.++|++++.. .+
T Consensus 147 ~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~ 226 (363)
T 3hws_A 147 QQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELL 226 (363)
T ss_dssp HHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHH
T ss_pred HHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHH
Confidence 89999999831 1234555655532 11
Q ss_pred ------------ChHHHhccE-EEEEEcCCCHHHHHHHHHH----HH-------HhcC--CCcchhHHHHHHHh---cCC
Q psy13354 542 ------------IPITVLSRC-IQFNLKKMLHHDIVNNLCY----IL-------NKEN--IKFETSALNLIATG---AQG 592 (1342)
Q Consensus 542 ------------l~~~L~sR~-~~i~~~~l~~~el~~~l~~----~~-------~~~g--~~i~~~al~~La~~---~~g 592 (1342)
+.+.+.+|+ .++.|.|++.+++.+++.. .+ ...+ +.+++++++.|++. ..+
T Consensus 227 ~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~ 306 (363)
T 3hws_A 227 AQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKT 306 (363)
T ss_dssp HTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCcc
Confidence 567889999 6777999999998888764 22 2224 45899999999975 367
Q ss_pred cHHHHHHHHHHHHhhc-----C--C----CCCHHHHHHHh
Q psy13354 593 SMRDALSLTDQAINYS-----S--E----KITLNSMQEML 621 (1342)
Q Consensus 593 ~lr~a~~~L~kl~~~~-----~--~----~It~e~V~~~v 621 (1342)
+.|.+.+.+++++.-. . . .||.++|++..
T Consensus 307 gaR~L~~~ie~~~~~~l~~~~~~~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 307 GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQS 346 (363)
T ss_dssp TTTTHHHHHHHHHHHHHHSTTTCCCSEEEECHHHHTTCCS
T ss_pred CchHHHHHHHHHHHHHHHhcccccCCceeEEcHHHHhCcC
Confidence 7888888888765432 1 1 16777766554
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.3e-10 Score=124.39 Aligned_cols=206 Identities=17% Similarity=0.185 Sum_probs=132.1
Q ss_pred CCCCccccccchhhHHHHHHHHH------------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALD------------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~------------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
...+|+++.|.+.+++.|.+.+. +-.++..++|+||+|+|||+++++++..+..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-------------- 70 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-------------- 70 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC--------------
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC--------------
Confidence 35689999999999999887652 1245667999999999999999999998752
Q ss_pred CCCcchhhhccCCCccEEEEccCCCc--CH----HHHHHHHHHHhhcCccCCceEEEeccCccCCH-----------HHH
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAASTR--GI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-----------HAF 516 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~~--~~----~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-----------~~~ 516 (1342)
.++.+++.... .. ..++.+.+.+.. ..+.++++||++.+.. ...
T Consensus 71 ---------------~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~----~~p~i~~~Deid~~~~~r~~~~~~~~~~~~ 131 (274)
T 2x8a_A 71 ---------------NFISVKGPELLNMYVGESERAVRQVFQRAKN----SAPCVIFFDEVDALCPRRSDRETGASVRVV 131 (274)
T ss_dssp ---------------EEEEEETTTTCSSTTHHHHHHHHHHHHHHHH----TCSEEEEEETCTTTCC---------CTTHH
T ss_pred ---------------CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHh----cCCCeEeeehhhhhhcccCCCcchHHHHHH
Confidence 34555543221 11 234444444322 2245999999997631 134
Q ss_pred HHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhc-CCCcc-hhHHHHHHHh
Q psy13354 517 NAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKE-NIKFE-TSALNLIATG 589 (1342)
Q Consensus 517 ~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~-g~~i~-~~al~~La~~ 589 (1342)
+.++..|+.. ...++++.++|.++.+++++.+ |+ ..+.++.|+.++..++++..++.. ...++ +..++.++..
T Consensus 132 ~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~ 211 (274)
T 2x8a_A 132 NQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGD 211 (274)
T ss_dssp HHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTC
T ss_pred HHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHh
Confidence 5666666543 2456677788999999999987 77 789999999999999998877542 22332 3346777764
Q ss_pred c---CCcHHHHHHHHHHHHhhc---------------CCCCCHHHHHHHhccC
Q psy13354 590 A---QGSMRDALSLTDQAINYS---------------SEKITLNSMQEMLSII 624 (1342)
Q Consensus 590 ~---~g~lr~a~~~L~kl~~~~---------------~~~It~e~V~~~v~~~ 624 (1342)
+ |-+..++.+++..+...+ ...|+.+|+++++...
T Consensus 212 ~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 264 (274)
T 2x8a_A 212 LRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264 (274)
T ss_dssp SGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTC
T ss_pred hccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHh
Confidence 3 446666666666544332 1137777777766543
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-11 Score=154.22 Aligned_cols=185 Identities=18% Similarity=0.258 Sum_probs=118.6
Q ss_pred CCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
..+|+++.|.+++++.|.+.+.. -..+..+|||||||||||.+|+++|.+++.
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~--------------- 537 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 537 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC---------------
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC---------------
Confidence 34689999999999999888742 134567999999999999999999999873
Q ss_pred CCcchhhhccCCCccEEEEccC------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------H
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAA------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------------H 514 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------------~ 514 (1342)
.++.++.+ ...+...++++++.+... .+-||+|||+|.+.. .
T Consensus 538 --------------~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~----~P~IifiDEiDsl~~~R~~~~~~~~~~~~r 599 (806)
T 3cf2_A 538 --------------NFISIKGPELLTMWFGESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADR 599 (806)
T ss_dssp --------------EEEECCHHHHHTTTCSSCHHHHHHHHHHHHTT----CSEEEECSCGGGCC--------------CH
T ss_pred --------------ceEEeccchhhccccchHHHHHHHHHHHHHHc----CCceeechhhhHHhhccCCCCCCCchHHHH
Confidence 35555432 123446788888887643 235999999998731 1
Q ss_pred HHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh
Q psy13354 515 AFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG 589 (1342)
Q Consensus 515 ~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~ 589 (1342)
..+.||..++.. ...+++|.+||.++.+++++++ |+ ..+.++.|+.++..++++.++++..+. ++..++.|++.
T Consensus 600 v~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~ 678 (806)
T 3cf2_A 600 VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKM 678 (806)
T ss_dssp HHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC---------
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHh
Confidence 367788888743 4567788899999999999997 88 788999999999999988777654432 23346777776
Q ss_pred cCC-cHHHHHHHHHHHH
Q psy13354 590 AQG-SMRDALSLTDQAI 605 (1342)
Q Consensus 590 ~~g-~lr~a~~~L~kl~ 605 (1342)
+.| +-.++.+++..+.
T Consensus 679 t~g~SGadi~~l~~~A~ 695 (806)
T 3cf2_A 679 TNGFSGADLTEICQRAC 695 (806)
T ss_dssp -------CHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 544 3333444444433
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.4e-10 Score=134.22 Aligned_cols=235 Identities=16% Similarity=0.194 Sum_probs=144.3
Q ss_pred HhhccCCCCccccccchhhHHHHHHHH-H---cC--CCCcEEEE--EccCcccHHHHHHHHHHHhccCCC--CCCCCccc
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINAL-D---KK--RLHHAYLF--TGTRGVGKTTISRILAKCLNCIGI--DGNGGITS 450 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l-~---~~--~~~~~~Ll--~G~~G~GKT~la~~iak~L~~~~~--~~~~~~~~ 450 (1342)
+..+|.| ++++|++..++.|...+ . .+ ..++.+++ +||+|+|||++++.+++.+..... .......+
T Consensus 15 ~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 15 FDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp GSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 4445666 67899999888888877 4 23 44567899 999999999999999998753100 00000112
Q ss_pred CCCCCCcchhhhccCCCccEEEEcc-CCCcCHHH-HHHHHHHHhhcCccCCceEEEeccCccCC------HHHHHHHHHh
Q psy13354 451 QPCGKCSVCVKIDNGCFMDYIEMDA-ASTRGINE-MAQLLEQTIYAPINARYKIYVIDEVHMLT------HHAFNAMLKT 522 (1342)
Q Consensus 451 ~~c~~~~~~~~~~~~~~~d~~~i~~-~~~~~~~~-i~~ii~~~~~~p~~~~~rvviIDE~~~L~------~~~~~~Ll~~ 522 (1342)
..|..+.+...+.......+ .... ........ +..+.+.+. ..+.+.+|+|||+|.+. .+....|++.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~ 167 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQT-GYPIQVRGAPALDILKALVDNLY---VENHYLLVILDEFQSMLSSPRIAAEDLYTLLRV 167 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHH-TCCCCCTTCCHHHHHHHHHHHHH---HHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTH
T ss_pred EECCCCCCHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHH---hcCCeEEEEEeCHHHHhhccCcchHHHHHHHHH
Confidence 22222111111100000000 0000 00111122 222222222 12345689999999874 3566667777
Q ss_pred hcCCC-----CcEEEEEEeCCCC---CCh---HHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcC--CCcchhHHHHHHH
Q psy13354 523 LEEPP-----KYIKFILATTEPQ---KIP---ITVLSRC-IQFNLKKMLHHDIVNNLCYILNKEN--IKFETSALNLIAT 588 (1342)
Q Consensus 523 Le~p~-----~~~vlIl~t~~~~---kl~---~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g--~~i~~~al~~La~ 588 (1342)
+++.+ ..+.+|++++.++ .+. +.+.++. ..+.|.+++.+++.+++..++...+ ..+++++++.+++
T Consensus 168 ~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 168 HEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred HHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 76443 5777888886554 223 4555654 4599999999999999998876543 3588999999999
Q ss_pred hcC------CcHHHHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 589 GAQ------GSMRDALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 589 ~~~------g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
.++ |+++.+.+++..+...+ ...++.+++..++.
T Consensus 248 ~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~ 291 (412)
T 1w5s_A 248 VYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 291 (412)
T ss_dssp HHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 999 99999999998765443 23478887776553
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.2e-10 Score=131.87 Aligned_cols=126 Identities=19% Similarity=0.275 Sum_probs=92.6
Q ss_pred eEEEeccCccCCH------------HHHHHHHHhhcCC----------CCcEEEEEEe----CCCCCChHHHhccE-EEE
Q psy13354 501 KIYVIDEVHMLTH------------HAFNAMLKTLEEP----------PKYIKFILAT----TEPQKIPITVLSRC-IQF 553 (1342)
Q Consensus 501 rvviIDE~~~L~~------------~~~~~Ll~~Le~p----------~~~~vlIl~t----~~~~kl~~~L~sR~-~~i 553 (1342)
-++++||+|++.. ..+++||+.+|.. ..+++||++. .++..+.+.+.+|+ .++
T Consensus 252 ~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i 331 (444)
T 1g41_A 252 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV 331 (444)
T ss_dssp CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEE
T ss_pred CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceee
Confidence 3899999998842 2567999999962 4567788876 24445668999999 559
Q ss_pred EEcCCCHHHHHHHHHH-----------HHHhcCC--CcchhHHHHHHHh--------cCCcHHHHHHHHHHHHhhc----
Q psy13354 554 NLKKMLHHDIVNNLCY-----------ILNKENI--KFETSALNLIATG--------AQGSMRDALSLTDQAINYS---- 608 (1342)
Q Consensus 554 ~~~~l~~~el~~~l~~-----------~~~~~g~--~i~~~al~~La~~--------~~g~lr~a~~~L~kl~~~~---- 608 (1342)
.|++++.+++.+++.. .+..+|+ .++++++..|++. -+...|.+.+.+++++.-.
T Consensus 332 ~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~ 411 (444)
T 1g41_A 332 ELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSA 411 (444)
T ss_dssp ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHG
T ss_pred eCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhc
Confidence 9999999999999831 2222344 6899999999985 3578888888888765431
Q ss_pred -C---C--CCCHHHHHHHhccCcH
Q psy13354 609 -S---E--KITLNSMQEMLSIIDQ 626 (1342)
Q Consensus 609 -~---~--~It~e~V~~~v~~~~~ 626 (1342)
. . .||.+.|++.++....
T Consensus 412 ~~~~~~~~~i~~~~v~~~l~~~~~ 435 (444)
T 1g41_A 412 SDMNGQTVNIDAAYVADALGEVVE 435 (444)
T ss_dssp GGCTTCEEEECHHHHHHHHTTTTT
T ss_pred cccCCCeEEEeHHHHHHhcCcccc
Confidence 1 1 2899999988875443
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-09 Score=133.05 Aligned_cols=255 Identities=14% Similarity=0.072 Sum_probs=151.1
Q ss_pred cccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccE
Q psy13354 391 NTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDY 470 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~ 470 (1342)
..++||+++++.+..++..+. .+||+||||||||++|+++++.+.... ......|..+ +-..+.... ..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~---~VLL~GpPGtGKT~LAraLa~~l~~~~-----~f~~~~~~~~-t~~dL~G~~--~~ 90 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE---SVFLLGPPGIAKSLIARRLKFAFQNAR-----AFEYLMTRFS-TPEEVFGPL--SI 90 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC---EEEEECCSSSSHHHHHHHGGGGBSSCC-----EEEEECCTTC-CHHHHHCCB--C-
T ss_pred hhhHHHHHHHHHHHHHHhcCC---eeEeecCchHHHHHHHHHHHHHHhhhh-----HHHHHHHhcC-CHHHhcCcc--cH
Confidence 568999999999998888773 589999999999999999999774211 0011112110 000000000 00
Q ss_pred EEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC----------CCcEEEEEEeCCCC
Q psy13354 471 IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP----------PKYIKFILATTEPQ 540 (1342)
Q Consensus 471 ~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p----------~~~~vlIl~t~~~~ 540 (1342)
.. .. . ...+..+...+. ....|++|||++.++...++.|+..+++. .+..++|++||...
T Consensus 91 ~~---~~-----~-~g~~~~~~~g~l-~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lp 160 (500)
T 3nbx_X 91 QA---LK-----D-EGRYERLTSGYL-PEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELP 160 (500)
T ss_dssp ------------------CBCCTTSG-GGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCC
T ss_pred HH---Hh-----h-chhHHhhhccCC-CcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCC
Confidence 00 00 0 000000000110 12459999999999999999999999742 12224688887644
Q ss_pred C---ChHHHhccE-EEEEEcCCCH-HHHHHHHHHHH-----------------------HhcCCCcchhHHHHHHHhc--
Q psy13354 541 K---IPITVLSRC-IQFNLKKMLH-HDIVNNLCYIL-----------------------NKENIKFETSALNLIATGA-- 590 (1342)
Q Consensus 541 k---l~~~L~sR~-~~i~~~~l~~-~el~~~l~~~~-----------------------~~~g~~i~~~al~~La~~~-- 590 (1342)
. ..+++.+|+ ..+.+++|+. ++...++.... .-.++.+++++++++++..
T Consensus 161 e~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~ 240 (500)
T 3nbx_X 161 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQ 240 (500)
T ss_dssp CTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHH
Confidence 3 556999998 6688888887 55666665432 1236778999999998876
Q ss_pred --------CCcHHHHHHHHHHHHhhc--C--CCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHH-HHcCCC
Q psy13354 591 --------QGSMRDALSLTDQAINYS--S--EKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKI-EIYNLS 657 (1342)
Q Consensus 591 --------~g~lr~a~~~L~kl~~~~--~--~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L-~~~~~~ 657 (1342)
+.+.|.+...+.-+.+++ . ..|+.+||. ++.......+.+. ...-.+++.+ ...+.+
T Consensus 241 lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL~hr~~~~---------~~~~~~i~~~~~~~~~~ 310 (500)
T 3nbx_X 241 LDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCLWYDAQSL---------NLIQQQIDVLMTGHAWQ 310 (500)
T ss_dssp HHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTSCSSHHHH---------HHHHHHHHHHHHHTTTS
T ss_pred hhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhhhcCchHh---------HHHHHHHHHHHHHHHHH
Confidence 568899888776544443 2 349999998 6555444332111 0111122222 234556
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy13354 658 YSIVLKDLSLLLHQISLIQ 676 (1342)
Q Consensus 658 ~~~il~~L~~~~r~l~~~k 676 (1342)
...+...+...-.++..+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~ 329 (500)
T 3nbx_X 311 QQGMLTRLGAIVQRHLQLQ 329 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666555555554443
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-08 Score=120.41 Aligned_cols=305 Identities=14% Similarity=0.091 Sum_probs=164.5
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc--cCC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV--LNP 112 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al--~~p 112 (1342)
.+-.|.+.+|+.+.+. .+.. . ..+....+ ...++.+++.++...+ +.++|++|||+|++.+++.. ...
T Consensus 79 Gh~~p~v~~Ai~~q~~-~~~~--~-~~~~~~~~----~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~ 150 (456)
T 4atq_A 79 GASDPAVVAAVQEAAA-HFTH--T-CFMVTPYE----GYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATG 150 (456)
T ss_dssp CTTCHHHHHHHHHHHH-HCSC--C-TTTTSCCH----HHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHh-hccC--c-ccCccCcH----HHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhc
Confidence 3456779999888774 3321 1 11112222 2233455788887643 34566669999999999865 234
Q ss_pred CCEEEEeeccCCccchhhHHhh-----------hCCceeEEEEecCC---CC-CCCCHHHHHHHHH-------hcCCeEE
Q psy13354 113 GDTIMGMSLQEGGHLTHGMMLN-----------MSGKWFNSICYGLN---KK-EKIDYKKVEYLAK-------KNKPKLI 170 (1342)
Q Consensus 113 GD~Vlv~~~~~~~~~s~~~~~~-----------~~g~~~~~v~~~~~---~~-~~id~e~Le~~i~-------~~~~~li 170 (1342)
..+|+.....|.++........ .....+..++++.. .. ..-+.+.+++.+. ..+.+.+
T Consensus 151 r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAv 230 (456)
T 4atq_A 151 RDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAI 230 (456)
T ss_dssp CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred CCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEE
Confidence 5677766555444322111110 00112233333221 11 1112333333322 2345667
Q ss_pred EEcC--C---C-CCcccCHHHHHHHHHHcCCEEEEEcccch-hhhhc---CCCCCCCCCCcEEEecCCccCCCC-CeeEE
Q psy13354 171 IAGA--S---A-YSQYIDFERFYHIAKNINSYFMVDMAHYA-GLIAA---GEYPNPVPFADFITSTTHKSLRGP-RGGFI 239 (1342)
Q Consensus 171 v~~~--s---~-~~~~~~l~~I~~la~~~gi~LIvDea~~~-g~~~~---~~~~~~l~~~Divv~S~sK~l~gp-~GG~i 239 (1342)
++-+ + . .+....+++|.++|++||+++|+||++.- |-.+. ..+.+. .+|+++.+ |.++|. +-|++
T Consensus 231 ivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv--~PDivt~g--K~lggg~P~~av 306 (456)
T 4atq_A 231 IIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGV--VPDIITMA--KGIAGGLPLSAI 306 (456)
T ss_dssp EECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC--CCSEEEEC--GGGGTTSSCEEE
T ss_pred EeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCC--CCchhhhh--hcccCcCCceee
Confidence 7643 1 1 12344699999999999999999999862 22211 111221 26998776 988442 22889
Q ss_pred EEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----Cc---EEeeC-CC
Q psy13354 240 LMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GI---RIVSG-GT 311 (1342)
Q Consensus 240 v~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~---~~~~~-~~ 311 (1342)
++++++++.+....+.+++++ +|..++++.+.++.+.+. ++.++..+..+++.+.|+++ .. +++.. ..
T Consensus 307 ~~~~~i~~~~~~~~~~~Tf~g--npla~aaala~L~~i~~~--~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG 382 (456)
T 4atq_A 307 TGRADLLDAVHPGGLGGTYGG--NPVACAAALAAIDTMEQH--DLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRG 382 (456)
T ss_dssp EEEHHHHTTSCTTSSCCSSSS--CHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEE
T ss_pred EecHHHHhcccccCCCCCCCC--ChHHHHhhHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeee
Confidence 999998888876555555554 567777777777766421 24556666666777666552 11 11110 01
Q ss_pred CCeEEEEEccCCC---C----CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 312 KSHIILVDLRNKK---I----TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 312 ~~~~v~i~~~~~~---~----~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
-+.++.+.+..+. . ...+...+++ +|+++.+.... .+.+|+...-.
T Consensus 383 ~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~~g~~--------~~~irl~PpL~ 435 (456)
T 4atq_A 383 RGAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILTCGTY--------GNVIRLLPPLV 435 (456)
T ss_dssp ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT--------SCEEEECCCTT
T ss_pred cceEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEecCCC--------CCEEEEECCCC
Confidence 1334555553322 1 1245555555 59998754111 23578765443
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.9e-09 Score=121.70 Aligned_cols=153 Identities=11% Similarity=0.117 Sum_probs=99.0
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCC----C--cCHHHH
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS----T--RGINEM 484 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~----~--~~~~~i 484 (1342)
+.+..+|||||||||||++|+++|+.++. .++.++++. . .....+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~-----------------------------~~i~v~~~~l~~~~~g~~~~~i 84 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGI-----------------------------NPIMMSAGELESGNAGEPAKLI 84 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTC-----------------------------CCEEEEHHHHHCC---HHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-----------------------------CEEEEeHHHhhhccCchhHHHH
Confidence 55678999999999999999999999963 234443321 1 112345
Q ss_pred HHHHHHHhhcCccCCceEEEeccCccCCH-------------HHHHHHHHhhcC-------------CCCcEEEEEEeCC
Q psy13354 485 AQLLEQTIYAPINARYKIYVIDEVHMLTH-------------HAFNAMLKTLEE-------------PPKYIKFILATTE 538 (1342)
Q Consensus 485 ~~ii~~~~~~p~~~~~rvviIDE~~~L~~-------------~~~~~Ll~~Le~-------------p~~~~vlIl~t~~ 538 (1342)
++++..+........+.||+|||+|.+.. ..++.|+..++. ...++++|++||.
T Consensus 85 ~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~ 164 (293)
T 3t15_A 85 RQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGND 164 (293)
T ss_dssp HHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSS
T ss_pred HHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCC
Confidence 55665553221234556999999997743 234788888863 2346889999999
Q ss_pred CCCChHHHhc--cEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH-hcCCcHH
Q psy13354 539 PQKIPITVLS--RCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT-GAQGSMR 595 (1342)
Q Consensus 539 ~~kl~~~L~s--R~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~-~~~g~lr 595 (1342)
++.+++++++ |+..+-+ .|+.++..++++.++...++. .+.+..+.. .++.++.
T Consensus 165 ~~~ld~al~R~~R~d~~i~-~P~~~~r~~Il~~~~~~~~~~--~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 165 FSTLYAPLIRDGRMEKFYW-APTREDRIGVCTGIFRTDNVP--AEDVVKIVDNFPGQSID 221 (293)
T ss_dssp CCC--CHHHHHHHEEEEEE-CCCHHHHHHHHHHHHGGGCCC--HHHHHHHHHHSCSCCHH
T ss_pred cccCCHHHhCCCCCceeEe-CcCHHHHHHHHHHhccCCCCC--HHHHHHHhCCCCcccHH
Confidence 9999999885 6654333 469999999999888776654 444444444 4455554
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-09 Score=133.71 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=72.3
Q ss_pred eeecCccccCCCHHHHHHHHHhcccccceE-------EecceeEEEeeeeCc--cCccccccccCcCCeeecccccC-ch
Q psy13354 1012 EYYPNGISTSLPFEAQIELVQSIDGMKNAN-------IIRPGYAIEYDYFNP--CNLKSSLETKQIHGLFFAGQING-TT 1081 (1342)
Q Consensus 1012 ~~~~~g~~~~l~~~~q~~~~~~i~gle~a~-------i~~~g~~v~~~~i~p--~~l~~tlesk~~~gL~~aGqi~g-~~ 1081 (1342)
.+.+..++..||+.+...|.+.|+.|++.. -+=+|+.++ +-.| -..+.+|||-.++|||.|||-.| +.
T Consensus 445 ~~~~~~l~~~~p~~~~~~l~e~~~~~~~~~~g~~~~~~~l~g~e~~--~ssp~ri~~~~~~~~~~~~gly~~GegaG~a~ 522 (549)
T 3nlc_A 445 GIKLTDLSKALPPFAVEAIREAIPAFDRKIKGFASEDGLLTGVETR--TSSPVCIKRGKDFQSVNLKGFYPAGEGAGYAG 522 (549)
T ss_dssp CEEECCGGGTSCHHHHHHHHHHHHHHHTTSTTTTCTTCEEEEEECC--SSCSEECCCTTTTSCTTCBTEEECHHHHTSCC
T ss_pred CcEEechhHhCcHHHHHHHHHHHHHhhccCcCCCCCCcEEEEEeec--cCCceeEEECCCceECCcCCEEEccccCChhh
Confidence 677899999999999999998877775543 111244444 5788 45778999989999999999999 68
Q ss_pred hHHHHHHHHHHHHHHHHHHhC
Q psy13354 1082 GYEEAASQGLLAGLNAALFSQ 1102 (1342)
Q Consensus 1082 gy~eA~~~G~~Ag~na~~~~~ 1102 (1342)
|...||+.|+.|+.+++.++.
T Consensus 523 gi~~Aa~~G~~~a~~i~~~~~ 543 (549)
T 3nlc_A 523 GILSAGIDGIKVAEAVARDIV 543 (549)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998887764
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.2e-09 Score=105.34 Aligned_cols=133 Identities=13% Similarity=0.151 Sum_probs=88.9
Q ss_pred ccccchhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccE
Q psy13354 392 TLIGQNHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDY 470 (1342)
Q Consensus 392 ~lvGq~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~ 470 (1342)
+++|+...++.+.+.++. ......+||+||+|||||++|+++++.....+ ..+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~--------------------------~~~ 55 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ--------------------------GEF 55 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT--------------------------SCC
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccC--------------------------CCE
Confidence 688999998888887753 22334589999999999999999998653210 123
Q ss_pred EEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCC-------CCh
Q psy13354 471 IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQ-------KIP 543 (1342)
Q Consensus 471 ~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~-------kl~ 543 (1342)
+ ++++...........++.+ ...+++|||++.++.+.++.|+..++..+.++.+|++||.+. .+.
T Consensus 56 v-~~~~~~~~~~~~~~~~~~a-------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~ 127 (145)
T 3n70_A 56 V-YRELTPDNAPQLNDFIALA-------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHII 127 (145)
T ss_dssp E-EEECCTTTSSCHHHHHHHH-------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCC
T ss_pred E-EECCCCCcchhhhcHHHHc-------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCC
Confidence 3 4443322212233344433 224899999999999999999999988777888999998642 344
Q ss_pred HHHhccE--EEEEEcCC
Q psy13354 544 ITVLSRC--IQFNLKKM 558 (1342)
Q Consensus 544 ~~L~sR~--~~i~~~~l 558 (1342)
+.+..|. ..+.++|+
T Consensus 128 ~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 128 AELYYCFAMTQIACLPL 144 (145)
T ss_dssp HHHHHHHHHHEEECCCC
T ss_pred HHHHHHhcCCEEeCCCC
Confidence 4555554 34555554
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.82 E-value=4e-09 Score=131.84 Aligned_cols=210 Identities=21% Similarity=0.195 Sum_probs=131.7
Q ss_pred ccccccchhhHHHHHHHHHcCCCC----------cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 390 FNTLIGQNHISKSLINALDKKRLH----------HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 390 f~~lvGq~~~~~~L~~~l~~~~~~----------~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
...++||+.++..+..++..|... ..+||+||||||||++|+.+++.+.... ..+....+|
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~---------~~~~~~~~~ 364 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAV---------YTTGKGSTA 364 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEE---------CCCTTCSTT
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCce---------ecCCCcccc
Confidence 356899999998887777766311 1589999999999999999998774210 011111112
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC-------------
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP------------- 526 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p------------- 526 (1342)
..+...... +......... ...+.. ++.-+++|||++.++.+.++.|++.+|+.
T Consensus 365 ~~l~~~~~~-----~~~~g~~~~~-~G~l~~-------A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~ 431 (595)
T 3f9v_A 365 AGLTAAVVR-----EKGTGEYYLE-AGALVL-------ADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKL 431 (595)
T ss_dssp TTSEEECSS-----GGGTSSCSEE-ECHHHH-------HSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEE
T ss_pred ccccceeee-----cccccccccc-CCeeEe-------cCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEe
Confidence 111110000 0000000000 000111 13359999999999999999999999863
Q ss_pred CCcEEEEEEeCCCC-------------CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhc------------------
Q psy13354 527 PKYIKFILATTEPQ-------------KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKE------------------ 574 (1342)
Q Consensus 527 ~~~~vlIl~t~~~~-------------kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~------------------ 574 (1342)
+..+.+|.++|... .+.+++++|+ ..+.+.++...+...++...+..+
T Consensus 432 ~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i 511 (595)
T 3f9v_A 432 NARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYI 511 (595)
T ss_dssp CCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHH
T ss_pred cCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHH
Confidence 24566788888664 6788999999 455555555544444444333322
Q ss_pred -------CCCcchhHHHHHHHh---------------cCCcHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 575 -------NIKFETSALNLIATG---------------AQGSMRDALSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 575 -------g~~i~~~al~~La~~---------------~~g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
.-.+++++.+.|.+. .+++.|.+.+++.-+.+.+ ...|+.+||.+++
T Consensus 512 ~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai 584 (595)
T 3f9v_A 512 AYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAI 584 (595)
T ss_dssp HHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHH
Confidence 225778888888876 4778999888887654443 3459999999887
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4.6e-07 Score=109.99 Aligned_cols=251 Identities=14% Similarity=0.125 Sum_probs=140.3
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc-----
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL----- 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~----- 110 (1342)
.+-.|.+.+|+.+.+.. ... + ..+++... +...++.+++.+..+.+ +-+.|++|||+|++.+++...
T Consensus 82 Gh~~p~v~~Ai~~q~~~-l~~-~--~~~~~~~~---~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~ 154 (473)
T 4e3q_A 82 GFDHKGLIDAAKAQYER-FPG-Y--HAFFGRMS---DQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAA 154 (473)
T ss_dssp CSCCHHHHHHHHHHHHH-CCC-C--CCCTTEEE---HHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHh-ccc-c--cccccccC---HHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHh
Confidence 44567899998888753 211 1 11121111 22334566888887654 456677799999999998652
Q ss_pred --CCC-CEEEEeeccCCccchhhHHh---------hhCCceeEEEEecC----CCCCCCC-------HHHHHHHHHhc--
Q psy13354 111 --NPG-DTIMGMSLQEGGHLTHGMML---------NMSGKWFNSICYGL----NKKEKID-------YKKVEYLAKKN-- 165 (1342)
Q Consensus 111 --~pG-D~Vlv~~~~~~~~~s~~~~~---------~~~g~~~~~v~~~~----~~~~~id-------~e~Le~~i~~~-- 165 (1342)
.++ .+|+.....|.+........ ...-.++..++.|. ...+..+ .+++++.+...
T Consensus 155 ~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 234 (473)
T 4e3q_A 155 EGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGA 234 (473)
T ss_dssp TTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCG
T ss_pred cCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCC
Confidence 233 35665544443322111110 00111223333331 1111111 23445555432
Q ss_pred -CCeEEEEcC-----CC-CCcccCHHHHHHHHHHcCCEEEEEcccch-hhhhc---CCCCCCCCCCcEEEecCCccCCCC
Q psy13354 166 -KPKLIIAGA-----SA-YSQYIDFERFYHIAKNINSYFMVDMAHYA-GLIAA---GEYPNPVPFADFITSTTHKSLRGP 234 (1342)
Q Consensus 166 -~~~liv~~~-----s~-~~~~~~l~~I~~la~~~gi~LIvDea~~~-g~~~~---~~~~~~l~~~Divv~S~sK~l~gp 234 (1342)
+.+.|++-+ +. .+....+++|.++|++||++||+||++.- |-.+. ..+.+. .+|+++.+ |.++|.
T Consensus 235 ~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv--~PDi~t~~--K~l~gG 310 (473)
T 4e3q_A 235 DTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDF--TPDAIISS--KNLTAG 310 (473)
T ss_dssp GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTC--CCSEEEEC--GGGGTT
T ss_pred CceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCC--CCChHHhc--ccccCC
Confidence 345566633 11 12344699999999999999999999852 22111 011111 25988765 999543
Q ss_pred --CeeEEEEechhHHHHhhc-------cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 235 --RGGFILMKKKYKKIINSA-------VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 235 --~GG~iv~~~~l~~~l~~~-------~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
+-|++++++++++.+... .+.+++++ +|..+|++.+.++.+.+ +.+.++..+..++|.+.|+++
T Consensus 311 ~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~G--npla~Aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l 383 (473)
T 4e3q_A 311 FFPMGAVILGPELSKRLETAIEAIEEFPHGFTASG--HPVGCAIALKAIDVVMN--EGLAENVRRLAPRFEERLKHI 383 (473)
T ss_dssp SSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTT--CHHHHHHHHHHHHHHHH--SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccccHHHHHHhccccccccccccCCCCCC--Ccchhhhhhhhhhhhcc--ccHHHHHHHHHHHHHHHHHHH
Confidence 338899999988876532 23333333 67777777777776532 234566777788888888763
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.7e-08 Score=111.98 Aligned_cols=201 Identities=12% Similarity=0.084 Sum_probs=121.9
Q ss_pred CccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc------c----
Q psy13354 389 NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS------V---- 458 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~------~---- 458 (1342)
.-..++|++..++.|.+++..+ +.++++||+|+|||++++.+++.+.. .+..|..+. .
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~---~~v~i~G~~G~GKT~Ll~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY---PLTLLLGIRRVGKSSLLRAFLNERPG---------ILIDCRELYAERGHITREEL 77 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHHSSE---------EEEEHHHHHHTTTCBCHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC---CeEEEECCCcCCHHHHHHHHHHHcCc---------EEEEeecccccccCCCHHHH
Confidence 3466899999999999999876 57999999999999999999987520 111111110 0
Q ss_pred hhhhccCCCc--------cE-EEEcc-CCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH-------HHHHHHHH
Q psy13354 459 CVKIDNGCFM--------DY-IEMDA-ASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-------HAFNAMLK 521 (1342)
Q Consensus 459 ~~~~~~~~~~--------d~-~~i~~-~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-------~~~~~Ll~ 521 (1342)
+..+...... .+ ..+.. ........+.++++.+....-..++.+|+|||+|.+.. +....|..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 0000000000 00 00000 00000112333333322211111256899999998753 34444544
Q ss_pred hhcCCCCcEEEEEEeCCCC---------CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcC
Q psy13354 522 TLEEPPKYIKFILATTEPQ---------KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQ 591 (1342)
Q Consensus 522 ~Le~p~~~~vlIl~t~~~~---------kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~ 591 (1342)
.++.. +++.+|+++.... .....+..|. ..+.+.|++.++..+++...+...|..++++.+..+++.++
T Consensus 158 ~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tg 236 (350)
T 2qen_A 158 AYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLD 236 (350)
T ss_dssp HHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHT
T ss_pred HHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 44543 4677777765421 1111234454 68999999999999999998888888899999999999999
Q ss_pred CcHHHHHHHHH
Q psy13354 592 GSMRDALSLTD 602 (1342)
Q Consensus 592 g~lr~a~~~L~ 602 (1342)
|++..+.....
T Consensus 237 G~P~~l~~~~~ 247 (350)
T 2qen_A 237 GIPGWLVVFGV 247 (350)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99987655443
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=98.70 E-value=5.6e-07 Score=105.92 Aligned_cols=190 Identities=18% Similarity=0.263 Sum_probs=129.2
Q ss_pred cccccchhhHHHHHHHHH---cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCC
Q psy13354 391 NTLIGQNHISKSLINALD---KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF 467 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~---~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 467 (1342)
.+++|+...+..+...+. .... .++++|++|+||+.+|+.+.+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~--~vli~GesGtGKe~lAr~ih~~s~r~--------------------------- 179 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKA--PVLITGESGTGKEIVARLIHRYSGRK--------------------------- 179 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCS--CEEEECCTTSSHHHHHHHHHHHHCCC---------------------------
T ss_pred ccccccchHHHHHHhhhhhhhccch--hheEEeCCCchHHHHHHHHHHhcccc---------------------------
Confidence 468888777766655542 3333 38999999999999999998876421
Q ss_pred ccEEEEccCCCcCHHHHHHHHHHHhhcCc------------cCCceEEEeccCccCCHHHHHHHHHhhcCC---------
Q psy13354 468 MDYIEMDAASTRGINEMAQLLEQTIYAPI------------NARYKIYVIDEVHMLTHHAFNAMLKTLEEP--------- 526 (1342)
Q Consensus 468 ~d~~~i~~~~~~~~~~i~~ii~~~~~~p~------------~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p--------- 526 (1342)
..|+.+|++.......-.+++.. ...+| .++.-.+++||++.|+.+.+..|+++|++.
T Consensus 180 ~~fv~vnc~~~~~~~~~~~lfg~-~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~ 258 (368)
T 3dzd_A 180 GAFVDLNCASIPQELAESELFGH-EKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQ 258 (368)
T ss_dssp SCEEEEESSSSCTTTHHHHHHEE-CSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCC
T ss_pred CCcEEEEcccCChHHHHHHhcCc-cccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCc
Confidence 11666666543221111112110 00000 012348999999999999999999999853
Q ss_pred --CCcEEEEEEeCCCC-------CChHHHhccE--EEEEEcCCCH--HHHHHHHHHHHH----hcC---CCcchhHHHHH
Q psy13354 527 --PKYIKFILATTEPQ-------KIPITVLSRC--IQFNLKKMLH--HDIVNNLCYILN----KEN---IKFETSALNLI 586 (1342)
Q Consensus 527 --~~~~vlIl~t~~~~-------kl~~~L~sR~--~~i~~~~l~~--~el~~~l~~~~~----~~g---~~i~~~al~~L 586 (1342)
+.++.+|.+|+..- .+.+.|..|+ ..+.++|+.+ +++...+...++ +.+ ..+++++++.|
T Consensus 259 ~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 338 (368)
T 3dzd_A 259 KIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYL 338 (368)
T ss_dssp BEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 13567888888642 4445677776 5678888876 677665555443 334 35999999999
Q ss_pred HHhc-CCcHHHHHHHHHHHHhhcCC
Q psy13354 587 ATGA-QGSMRDALSLTDQAINYSSE 610 (1342)
Q Consensus 587 a~~~-~g~lr~a~~~L~kl~~~~~~ 610 (1342)
..+. .||+|.+.+.++.++..+.+
T Consensus 339 ~~~~wpGNvreL~n~i~~~~~~~~~ 363 (368)
T 3dzd_A 339 MKQEWKGNVRELKNLIERAVILCEG 363 (368)
T ss_dssp HTCCCTTHHHHHHHHHHHHHHTCCS
T ss_pred HhCCCCcHHHHHHHHHHHHHHhCCC
Confidence 9987 99999999999998877654
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-07 Score=122.23 Aligned_cols=167 Identities=11% Similarity=0.008 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCC--CCC-CCcEEEecCCccCCCC--CeeEEEEechhHHHHhhcc--
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPN--PVP-FADFITSTTHKSLRGP--RGGFILMKKKYKKIINSAV-- 253 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp--~GG~iv~~~~l~~~l~~~~-- 253 (1342)
.+++|.++|++||++||+||++. +|..+ .... .+. .+|+++ ++|.++|. +-|++++++++++.+....
T Consensus 617 ~L~~l~~lc~~~gilLI~DEV~tGfGRtG--~~fa~e~~gv~PDiit--lsK~L~gG~~Plgav~~~~~i~~~~~~~~~~ 692 (831)
T 4a0g_A 617 FQRVLVNECRNRKIPVIFDEVFTGFWRLG--VETTTELLGCKPDIAC--FAKLLTGGMVPLAVTLATDAVFDSFSGDSKL 692 (831)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTTTTTTTS--BSSTHHHHSSCCSEEE--ECGGGGTTSSCCEEEEECHHHHHTTCSSCGG
T ss_pred HHHHHHHHHHHcCCeEEEEcCccccccCC--CchhhHhcCCCCcEEE--EecccccCccCcEEEEECHHHHHHHhccccc
Confidence 49999999999999999999975 32222 1111 011 258774 66999552 2299999999988876532
Q ss_pred --CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHH--------HHHHHHHHhCC-cEEeeCCCCCeEEEEEccC
Q psy13354 254 --FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNA--------KILSKILDQRG-IRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 254 --~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a--------~~l~~~L~~~g-~~~~~~~~~~~~v~i~~~~ 322 (1342)
..+.++...+|..+|++.+.++.+.+. ...+++.++. +.+.+.+.+.+ +..+. ..+.++.+.+..
T Consensus 693 ~~~~hg~T~~g~Pla~Aaala~L~~i~~~--~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vr--g~Gl~~~iel~~ 768 (831)
T 4a0g_A 693 KALLHGHSYSAHAMGCATAAKAIQWFKDP--ETNHNITSQGKTLRELWDEELVQQISSHSAVQRVV--VIGTLFALELKA 768 (831)
T ss_dssp GSCCCCCTTTTCHHHHHHHHHHHHHHHCT--TTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEE--EETTEEEEEEC-
T ss_pred ccceeecCCcccHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEe--ecccEEEEEEec
Confidence 112223333567777777766664311 1112221111 12334454443 22222 223455555532
Q ss_pred CC--------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 323 KK--------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 323 ~~--------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.. ....+...+++ +||++.+. .+.+|++.+..++
T Consensus 769 ~~~~~~~~~~~a~~~~~~l~e-~Gv~v~p~-----------g~~lrl~pp~~~t 810 (831)
T 4a0g_A 769 DASNSGYASLYAKSLLIMLRE-DGIFTRPL-----------GNVIYLMCGPCTS 810 (831)
T ss_dssp --------CHHHHHHHHHHHH-TTEECCCB-----------TTEEEEECCTTCC
T ss_pred CccccccchHHHHHHHHHHHH-CCcEEEec-----------CCEEEEECCCCCC
Confidence 21 12245555554 69999753 2469998777655
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-08 Score=101.27 Aligned_cols=129 Identities=8% Similarity=0.113 Sum_probs=84.2
Q ss_pred ccccchhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccE
Q psy13354 392 TLIGQNHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDY 470 (1342)
Q Consensus 392 ~lvGq~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~ 470 (1342)
+++|+...++.+.+.+.. ......+||+||+|||||++|+.+++... .+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~------------------------------~~ 54 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT------------------------------PW 54 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS------------------------------CE
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC------------------------------Ce
Confidence 578999888888877753 12234489999999999999999886542 13
Q ss_pred EEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC-CCcEEEEEEeCCCC-C----ChH
Q psy13354 471 IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP-PKYIKFILATTEPQ-K----IPI 544 (1342)
Q Consensus 471 ~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p-~~~~vlIl~t~~~~-k----l~~ 544 (1342)
+.++++.... +....+++.+ +..+++|||++.++.+.++.|++++++. +.++.+|+++|... . +.+
T Consensus 55 ~~~~~~~~~~-~~~~~~~~~a-------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 55 VSPARVEYLI-DMPMELLQKA-------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp ECCSSTTHHH-HCHHHHHHHT-------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHH
T ss_pred EEechhhCCh-HhhhhHHHhC-------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccH
Confidence 3344432110 0123333332 2358999999999999999999999864 35677888887542 2 345
Q ss_pred HHhccE--EEEEEcCC
Q psy13354 545 TVLSRC--IQFNLKKM 558 (1342)
Q Consensus 545 ~L~sR~--~~i~~~~l 558 (1342)
.+..|. ..+.++|+
T Consensus 127 ~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 127 KLAGLFSESVVRIPPL 142 (143)
T ss_dssp HHHHHSSSEEEEECCC
T ss_pred HHHHHhcCcEEeCCCC
Confidence 666664 56666665
|
| >1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=95.12 Aligned_cols=125 Identities=12% Similarity=0.072 Sum_probs=94.5
Q ss_pred HHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCH
Q psy13354 402 SLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGI 481 (1342)
Q Consensus 402 ~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~ 481 (1342)
.+.+.++++ +.++|||||++-......+..+.+.+..++ +.+.+.....+.
T Consensus 8 ~l~~~l~~~-~~pvyll~G~E~~l~~~~~~~i~~~~~~~~----------------------------~~e~~~~~~~~~ 58 (140)
T 1jql_B 8 QLRAQLNEG-LRAAYLLLGNDPLLLQESQDAVRQVAAAQG----------------------------FEEHHTFSIDPN 58 (140)
T ss_dssp GHHHHHHHC-CCSEEEEESSCHHHHHHHHHHHHHHHHHTT----------------------------CCEEECCCCSTT
T ss_pred HHHHHHhcc-CCceEEEEcCcHHHHHHHHHHHHHHHHHCC----------------------------CcceeEEEecCC
Confidence 344555544 889999999999999999999988775321 111121111222
Q ss_pred HHHHHHHHHHhhcCccCCceEEEeccCcc-CCHHHHHHHHHhhcCCCCcEEEEEEeCCCC------CChHHHhccEEEEE
Q psy13354 482 NEMAQLLEQTIYAPINARYKIYVIDEVHM-LTHHAFNAMLKTLEEPPKYIKFILATTEPQ------KIPITVLSRCIQFN 554 (1342)
Q Consensus 482 ~~i~~ii~~~~~~p~~~~~rvviIDE~~~-L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~------kl~~~L~sR~~~i~ 554 (1342)
.++.++++++.+.|+|+++|+|+|.+++. ++++..+.|.+|+++|++++++|++..+.+ |+.+++.+.+.+++
T Consensus 59 ~~~~~l~~~~~s~slF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~ 138 (140)
T 1jql_B 59 TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVT 138 (140)
T ss_dssp CCHHHHHHHHHCCCTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEE
T ss_pred CCHHHHHHHHhcCCCCCCCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEE
Confidence 57899999999999999999999999764 677778899999999999999999986544 45668877777776
Q ss_pred E
Q psy13354 555 L 555 (1342)
Q Consensus 555 ~ 555 (1342)
|
T Consensus 139 ~ 139 (140)
T 1jql_B 139 C 139 (140)
T ss_dssp C
T ss_pred e
Confidence 5
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=9.6e-07 Score=104.76 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=133.3
Q ss_pred ccccccchhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCc
Q psy13354 390 FNTLIGQNHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFM 468 (1342)
Q Consensus 390 f~~lvGq~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 468 (1342)
|..++|+...++.+.+.+.. ......++++|++|+||+++|+.+....... ..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~--------------------------~~ 189 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRS--------------------------KE 189 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT--------------------------TS
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCC--------------------------CC
Confidence 56788877776666655532 1112337999999999999999998865421 12
Q ss_pred cEEEEccCCCcCHHHHH-HHHHHHhhcCc------------cCCceEEEeccCccCCHHHHHHHHHhhcCC---------
Q psy13354 469 DYIEMDAASTRGINEMA-QLLEQTIYAPI------------NARYKIYVIDEVHMLTHHAFNAMLKTLEEP--------- 526 (1342)
Q Consensus 469 d~~~i~~~~~~~~~~i~-~ii~~~~~~p~------------~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p--------- 526 (1342)
.|+.+|++.... +.+. +++.. ....+ .++.-.+++||++.++.+.+..|+++|++.
T Consensus 190 ~fv~v~~~~~~~-~~~~~elfg~-~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~ 267 (387)
T 1ny5_A 190 PFVALNVASIPR-DIFEAELFGY-EKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRK 267 (387)
T ss_dssp CEEEEETTTSCH-HHHHHHHHCB-CTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCS
T ss_pred CeEEEecCCCCH-HHHHHHhcCC-CCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCc
Confidence 356666653221 1111 11110 00000 012349999999999999999999999852
Q ss_pred --CCcEEEEEEeCCC-------CCChHHHhccE--EEEEEcCCCH--HHHHHHHHHHH----HhcCC---CcchhHHHHH
Q psy13354 527 --PKYIKFILATTEP-------QKIPITVLSRC--IQFNLKKMLH--HDIVNNLCYIL----NKENI---KFETSALNLI 586 (1342)
Q Consensus 527 --~~~~vlIl~t~~~-------~kl~~~L~sR~--~~i~~~~l~~--~el~~~l~~~~----~~~g~---~i~~~al~~L 586 (1342)
+.++.+|.+||.. ..+.+.+..|. ..+.++|+.+ +++...+...+ ++.+. .+++++++.|
T Consensus 268 ~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l 347 (387)
T 1ny5_A 268 EIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELL 347 (387)
T ss_dssp BEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHH
T ss_pred eeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 2367788888863 23445555555 5677888864 66655544443 34443 4899999999
Q ss_pred HHhc-CCcHHHHHHHHHHHHhhcCC-CCCHHHHHH
Q psy13354 587 ATGA-QGSMRDALSLTDQAINYSSE-KITLNSMQE 619 (1342)
Q Consensus 587 a~~~-~g~lr~a~~~L~kl~~~~~~-~It~e~V~~ 619 (1342)
..+. .||+|.+.+.++.++..+.+ .|+.+++..
T Consensus 348 ~~~~wpGNvreL~~~i~~~~~~~~~~~i~~~~l~~ 382 (387)
T 1ny5_A 348 LSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSC 382 (387)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHHCCSSEECHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhCCCCcCcHHHCcH
Confidence 9875 99999999999998887754 488887754
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.52 E-value=9.6e-07 Score=103.28 Aligned_cols=197 Identities=20% Similarity=0.156 Sum_probs=118.6
Q ss_pred CccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC-----cchhh--
Q psy13354 389 NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC-----SVCVK-- 461 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~-----~~~~~-- 461 (1342)
.-..++|.+..++.|.+ +.. +.++++||+|+|||++++.+++.+... ..+..|..+ .+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----~~v~i~G~~G~GKT~L~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----PITLVLGLRRTGKSSIIKIGINELNLP-------YIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----SEEEEEESTTSSHHHHHHHHHHHHTCC-------EEEEEGGGGTTCSCCCHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC----CcEEEECCCCCCHHHHHHHHHHhcCCC-------EEEEEchhhccccCCCHHHHH
Confidence 44678999999999998 765 479999999999999999999987421 111111110 00000
Q ss_pred ------h-------------ccCC-CccE----EEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH----
Q psy13354 462 ------I-------------DNGC-FMDY----IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH---- 513 (1342)
Q Consensus 462 ------~-------------~~~~-~~d~----~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~---- 513 (1342)
+ .... .... ..++... .....+.++++.+..... ++-+|+|||+|.+..
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~--~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNR-KDRLSFANLLESFEQASK--DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC------CCCHHHHHHHHHHTCS--SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCC-cchhhHHHHHHHHHhcCC--CCeEEEEECHHHhhccCch
Confidence 0 0000 0000 0111000 001234455555443321 356899999998743
Q ss_pred HHHHHHHHhhcCCCCcEEEEEEeCCCCC---------ChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHH
Q psy13354 514 HAFNAMLKTLEEPPKYIKFILATTEPQK---------IPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSAL 583 (1342)
Q Consensus 514 ~~~~~Ll~~Le~p~~~~vlIl~t~~~~k---------l~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al 583 (1342)
+....|....+.. +.+.+|+++..... ....+..|. ..+.+.+++.++..+++...+...+...++.
T Consensus 156 ~~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-- 232 (357)
T 2fna_A 156 NLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY-- 232 (357)
T ss_dssp CCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--
T ss_pred hHHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--
Confidence 2333444444433 35777777764321 111344564 7899999999999999998887777766554
Q ss_pred HHHHHhcCCcHHHHHHHHHH
Q psy13354 584 NLIATGAQGSMRDALSLTDQ 603 (1342)
Q Consensus 584 ~~La~~~~g~lr~a~~~L~k 603 (1342)
..+++.++|++..+......
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~ 252 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 88999999999987655443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=5.1e-07 Score=95.03 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=46.7
Q ss_pred hhccCCCCcccccc----chhhHHHHHHHHHcCCC--CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 382 ARKYRPSNFNTLIG----QNHISKSLINALDKKRL--HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 382 ~~k~~p~~f~~lvG----q~~~~~~L~~~l~~~~~--~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+++|++.+|+++++ |+.+++.+.+.+.+-.. +..++|+||+|+|||++++.++..+.
T Consensus 1 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 1 AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CchhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999986 66777777777765432 35799999999999999999999885
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=98.44 E-value=8.3e-07 Score=98.12 Aligned_cols=137 Identities=14% Similarity=0.154 Sum_probs=92.0
Q ss_pred hHHHHHHHHHcC-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCC
Q psy13354 399 ISKSLINALDKK-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS 477 (1342)
Q Consensus 399 ~~~~L~~~l~~~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~ 477 (1342)
....+...++.. ...++++||||||||||.++.++++.+... -.++.+.
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~------------------------------G~vn~~~ 138 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY------------------------------GCVNWTN 138 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE------------------------------EECCTTC
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhccc------------------------------ceeeccc
Confidence 345566666665 335689999999999999999999975311 0111111
Q ss_pred CcCHHHHHHHHHHHhhcCcc--CCceEEEeccCccCCHHHHHHHHHhhc--------CCC-----CcEEEEEEeCCC---
Q psy13354 478 TRGINEMAQLLEQTIYAPIN--ARYKIYVIDEVHMLTHHAFNAMLKTLE--------EPP-----KYIKFILATTEP--- 539 (1342)
Q Consensus 478 ~~~~~~i~~ii~~~~~~p~~--~~~rvviIDE~~~L~~~~~~~Ll~~Le--------~p~-----~~~vlIl~t~~~--- 539 (1342)
...++. .+++|++.||+.... +.++.+.++++ ... ..+.+|++||..
T Consensus 139 --------------~~f~l~~~~~k~i~l~Ee~~~~~-d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~ 203 (267)
T 1u0j_A 139 --------------ENFPFNDCVDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCA 203 (267)
T ss_dssp --------------SSCTTGGGSSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTC
T ss_pred --------------cccccccccccEEEEeccccchh-HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCccc
Confidence 011221 355677777777664 45566777776 211 345678888862
Q ss_pred --------CCChHHHhccEEEEEEc--------CCCHHHHHHHHHHHHHhcCCCcchh
Q psy13354 540 --------QKIPITVLSRCIQFNLK--------KMLHHDIVNNLCYILNKENIKFETS 581 (1342)
Q Consensus 540 --------~kl~~~L~sR~~~i~~~--------~l~~~el~~~l~~~~~~~g~~i~~~ 581 (1342)
+...+.|.||+.+++|. +++.++...++. +++.++.+++++
T Consensus 204 ~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~-w~~~~~~~~~~~ 260 (267)
T 1u0j_A 204 VIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR-WAKDHVVEVEHE 260 (267)
T ss_dssp EEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH-HHHHTCCCCCCC
T ss_pred ccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHH-HHHHcCCCCccc
Confidence 25667999999999999 899999999997 667777766543
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.22 E-value=4.9e-06 Score=87.72 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCc
Q psy13354 400 SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTR 479 (1342)
Q Consensus 400 ~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~ 479 (1342)
+..|+..++.-...++++||||||+|||++|.++++.+... +..+..+...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~-----------------------------i~~fans~s~ 95 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA-----------------------------VISFVNSTSH 95 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE-----------------------------ECCCCCSSSC
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCC-----------------------------eeeEEeccch
Confidence 46666666542123679999999999999999999998521 1111000000
Q ss_pred CHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHH-HHHHHHhhcCCC-------------CcEEEEEEeCC---CCCC
Q psy13354 480 GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHA-FNAMLKTLEEPP-------------KYIKFILATTE---PQKI 542 (1342)
Q Consensus 480 ~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~-~~~Ll~~Le~p~-------------~~~vlIl~t~~---~~kl 542 (1342)
....+ ..+.+++++||++.-..+. ...+..+++..+ ....+|++||. .+..
T Consensus 96 -----------f~l~~-l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~ 163 (212)
T 1tue_A 96 -----------FWLEP-LTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNR 163 (212)
T ss_dssp -----------GGGGG-GTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSS
T ss_pred -----------hhhcc-cCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccc
Confidence 00112 2346799999998432222 234555555432 12347888886 3455
Q ss_pred hHHHhccEEEEEEcCC
Q psy13354 543 PITVLSRCIQFNLKKM 558 (1342)
Q Consensus 543 ~~~L~sR~~~i~~~~l 558 (1342)
.+.|.||+..+.|+.+
T Consensus 164 ~~~L~SRi~~f~F~~~ 179 (212)
T 1tue_A 164 WPYLESRITVFEFPNA 179 (212)
T ss_dssp CHHHHTSCEEEECCSC
T ss_pred hhhhhhhEEEEEcCCC
Confidence 6799999999999843
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-05 Score=94.09 Aligned_cols=202 Identities=13% Similarity=0.041 Sum_probs=123.3
Q ss_pred cccchhhHHHHHHHHHcCC----CCcEEEEEccCcccHHHHHHHH-HHHhccCCCCCCCCcccCCCCCCcchhhhccCCC
Q psy13354 393 LIGQNHISKSLINALDKKR----LHHAYLFTGTRGVGKTTISRIL-AKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF 467 (1342)
Q Consensus 393 lvGq~~~~~~L~~~l~~~~----~~~~~Ll~G~~G~GKT~la~~i-ak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 467 (1342)
+.||+.++..|.-++..|. -.-++||.|+||+ ||++++.+ ++.+.. . .+. ++.+.++..+...
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR-~-------~ft-~g~~ss~~gLt~s-- 282 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR-G-------VYV-DLRRTELTDLTAV-- 282 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS-E-------EEE-EGGGCCHHHHSEE--
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC-e-------EEe-cCCCCCccCceEE--
Confidence 8999999988888887762 1114899999999 99999999 664421 0 000 1111111111100
Q ss_pred ccEEEEccCCCcCHHHHHHHHHHHhhcCc-cCCceEEEeccCccCCHHHHHHHHHhhcCC---------CCcEEEEEEeC
Q psy13354 468 MDYIEMDAASTRGINEMAQLLEQTIYAPI-NARYKIYVIDEVHMLTHHAFNAMLKTLEEP---------PKYIKFILATT 537 (1342)
Q Consensus 468 ~d~~~i~~~~~~~~~~i~~ii~~~~~~p~-~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p---------~~~~vlIl~t~ 537 (1342)
+ .+. .+ . .....++ .++.-++++||++.++...+.+|++.||+. |..+.+|.++|
T Consensus 283 --~--r~~---tG-~-------~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 283 --L--KED---RG-W-------ALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp --E--EES---SS-E-------EEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred --E--EcC---CC-c-------ccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 0 000 00 0 0000111 234459999999999999999999999863 45566677776
Q ss_pred CCC-----------CChHHHhccE-EEEEE--------------cCCCHHHHHHHHHHHH-HhcCCCcchhHHHHHHHh-
Q psy13354 538 EPQ-----------KIPITVLSRC-IQFNL--------------KKMLHHDIVNNLCYIL-NKENIKFETSALNLIATG- 589 (1342)
Q Consensus 538 ~~~-----------kl~~~L~sR~-~~i~~--------------~~l~~~el~~~l~~~~-~~~g~~i~~~al~~La~~- 589 (1342)
... .++.++++|+ ..+.. ..++.+++.+++...- ......+++++.++|.+.
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y 427 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWY 427 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHH
T ss_pred cccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHH
Confidence 543 6778999999 33321 2345566776665432 233678999988887753
Q ss_pred -----------------cCCcHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 590 -----------------AQGSMRDALSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 590 -----------------~~g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
.+-++|.+..++.-+-+++ ...++.+||++++
T Consensus 428 ~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai 480 (506)
T 3f8t_A 428 ETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAA 480 (506)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred HHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHH
Confidence 1246677777665433332 2348888888877
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-05 Score=97.11 Aligned_cols=60 Identities=22% Similarity=0.364 Sum_probs=45.9
Q ss_pred HHHhhccCCCCccccc-cchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccC
Q psy13354 379 VVLARKYRPSNFNTLI-GQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lv-Gq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~ 440 (1342)
-+|..||+|.+|+++- +|..++..+...+..+.. .+++.|++|||||+++..+++.+.+.
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~--~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH--HVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHSSSC--EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC--EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 4788999999999996 899999999999988763 68999999999999999999998753
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.2e-06 Score=90.56 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=44.8
Q ss_pred HhhccCCCCccccccch----hhHHHHHHHHHcCCC---CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 381 LARKYRPSNFNTLIGQN----HISKSLINALDKKRL---HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~----~~~~~L~~~l~~~~~---~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..+|++.+|+++++.. .+++.+.+.+..... +..++|+||+|+|||++++++++.+.
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567788999998743 456667777765421 26799999999999999999999886
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.02 E-value=4.3e-06 Score=85.06 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=63.0
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHh
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI 492 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~ 492 (1342)
...++|+||+|+|||+++++++..+...+ .....++.......
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g--------------------------~~~~~~~~~~~~~~----------- 78 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAG--------------------------KNAAYIDAASMPLT----------- 78 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTT--------------------------CCEEEEETTTSCCC-----------
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcC--------------------------CcEEEEcHHHhhHH-----------
Confidence 45689999999999999999999875210 12333433322111
Q ss_pred hcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC--CcEEEEEEeCCCC----CChHHHhccE
Q psy13354 493 YAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP--KYIKFILATTEPQ----KIPITVLSRC 550 (1342)
Q Consensus 493 ~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~--~~~vlIl~t~~~~----kl~~~L~sR~ 550 (1342)
.+..+..+++|||++.+.....+.|+++++... ..+++|++++... .. +.|.||+
T Consensus 79 --~~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~-~~L~SRl 139 (149)
T 2kjq_A 79 --DAAFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIR-EDLRTRM 139 (149)
T ss_dssp --GGGGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCC-HHHHHHG
T ss_pred --HHHhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHcccc-HHHHHHH
Confidence 123356799999999987655677777665321 1234677777543 23 7888886
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=97.92 E-value=4.6e-05 Score=108.26 Aligned_cols=141 Identities=13% Similarity=0.163 Sum_probs=100.3
Q ss_pred HHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHH
Q psy13354 403 LINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN 482 (1342)
Q Consensus 403 L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~ 482 (1342)
+..++..+ +.+||+||||||||.+|+.+...+.. ..+..++.+..+...
T Consensus 1260 l~~~l~~~---~~vLL~GPpGtGKT~la~~~l~~~~~----------------------------~~~~~infsa~ts~~ 1308 (2695)
T 4akg_A 1260 FYDLLNSK---RGIILCGPPGSGKTMIMNNALRNSSL----------------------------YDVVGINFSKDTTTE 1308 (2695)
T ss_dssp HHHHHHHT---CEEEEECSTTSSHHHHHHHHHHSCSS----------------------------CEEEEEECCTTCCHH
T ss_pred HHHHHHCC---CeEEEECCCCCCHHHHHHHHHhcCCC----------------------------CceEEEEeecCCCHH
Confidence 34455555 56899999999999999666543310 245667777777777
Q ss_pred HHHHHHHHHhh----------cCc-cCCceEEEeccCccCCH------HHHHHHHHhhcCCC------------CcEEEE
Q psy13354 483 EMAQLLEQTIY----------API-NARYKIYVIDEVHMLTH------HAFNAMLKTLEEPP------------KYIKFI 533 (1342)
Q Consensus 483 ~i~~ii~~~~~----------~p~-~~~~rvviIDE~~~L~~------~~~~~Ll~~Le~p~------------~~~vlI 533 (1342)
.+...++.... .|. .+.+-|++|||+++... ...+.|...+|... .++.+|
T Consensus 1309 ~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lI 1388 (2695)
T 4akg_A 1309 HILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIV 1388 (2695)
T ss_dssp HHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEE
T ss_pred HHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEE
Confidence 77777765421 222 34455888999886532 35666777776421 247788
Q ss_pred EEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhc
Q psy13354 534 LATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKE 574 (1342)
Q Consensus 534 l~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~ 574 (1342)
.++|.+. .+.+++.+|+.++.++.|+.+++..++..+++..
T Consensus 1389 aA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1389 GACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHH
T ss_pred EecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 8888773 7889999999999999999999999998887653
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=4.4e-05 Score=95.73 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=55.8
Q ss_pred HHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEe---CCCc--EEEcceEEEecccCCCceeEecccccCCCCCCCc
Q psy13354 810 KQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVT---KIGI--KFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 883 (1342)
Q Consensus 810 ~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~---~~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~ 883 (1342)
...+.+.+.+.+|++|+.+ .|++|+.++++|.||.. .+|+ .+.|+.||+|||-|- ..+..+ ++..
T Consensus 137 ~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s-------~~~~~~--~~~~ 207 (602)
T 1kf6_A 137 LHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG-------RVYRYN--TNGG 207 (602)
T ss_dssp HHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCG-------GGSSSB--SSCT
T ss_pred HHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCc-------ccccCc--CCCC
Confidence 3444455556678999766 79999999999999864 5676 699999999999332 112222 2233
Q ss_pred chHHHHHHHHH-cCCCcc
Q psy13354 884 STTSLAKRLKE-LQLSHG 900 (1342)
Q Consensus 884 ~s~~l~~~l~~-~g~~~~ 900 (1342)
.+++.+..+.- .|..+.
T Consensus 208 ~~tGdgi~~a~~aGa~~~ 225 (602)
T 1kf6_A 208 IVTGDGMGMALSHGVPLR 225 (602)
T ss_dssp TCSCHHHHHHHTTTCCEE
T ss_pred CcccHHHHHHHHcCCCcc
Confidence 46677777754 677554
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=97.73 E-value=7.2e-05 Score=93.81 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=53.0
Q ss_pred cCeeEEec-ccceEEEeCCeEEEEEe---CCCc--EEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHH
Q psy13354 821 LNLYLFQE-EVDDLIIKTNKILGVVT---KIGI--KFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKE 894 (1342)
Q Consensus 821 ~~~~i~~~-~v~~l~~~~~~~~gv~~---~~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~ 894 (1342)
.|++|+.+ .|.+|+.++++|.||++ .+|+ .+.|++||+|||-| ...-...++...++|.+..++.
T Consensus 168 ~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~---------~~~y~~~t~~~~~tGdG~~mA~ 238 (621)
T 2h88_A 168 YDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGY---------GRTYFSCTSAHTSTGDGTAMVT 238 (621)
T ss_dssp SCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCC---------GGGSSSBSSCTTCCCHHHHHHH
T ss_pred CCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcc---------ccccCCcCCCCCCChHHHHHHH
Confidence 79999776 79999999999999987 3675 69999999999933 2211223444457788888864
Q ss_pred -cCCCccc
Q psy13354 895 -LQLSHGR 901 (1342)
Q Consensus 895 -~g~~~~~ 901 (1342)
.|..+..
T Consensus 239 raGa~l~~ 246 (621)
T 2h88_A 239 RAGLPCQD 246 (621)
T ss_dssp HTTCCEEC
T ss_pred HcCCCccc
Confidence 8887643
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=8.7e-05 Score=91.93 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=57.0
Q ss_pred HHHHHcccCeeEEec-ccceEEE-eCC------eEEEEEeC---CCc--EEEcceEEEecccCCCceeEecccccCCCCC
Q psy13354 814 RFYLENQLNLYLFQE-EVDDLII-KTN------KILGVVTK---IGI--KFFSKTVILTTGTFLNGKIHIGLKSYSAGRF 880 (1342)
Q Consensus 814 ~~~~~~~~~~~i~~~-~v~~l~~-~~~------~~~gv~~~---~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~ 880 (1342)
.+.+++.+|++|+.+ .|++|+. +++ +|.||.+. +|+ .+.|+.||+||| |.+..-.-.+
T Consensus 145 ~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtG---------g~~~~~~~~~ 215 (540)
T 1chu_A 145 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATG---------GASKVYQYTT 215 (540)
T ss_dssp HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCC---------CCGGGSSSBS
T ss_pred HHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCC---------CcccccCCCc
Confidence 344555689999777 7999998 556 89999875 565 699999999999 4332212223
Q ss_pred CCcchHHHHHHHHH-cCCCcccc
Q psy13354 881 GDFSTTSLAKRLKE-LQLSHGRL 902 (1342)
Q Consensus 881 g~~~s~~l~~~l~~-~g~~~~~~ 902 (1342)
+...++|.+..++. .|..+..+
T Consensus 216 ~~~~~tGdG~~ma~~aGa~l~~~ 238 (540)
T 1chu_A 216 NPDISSGDGIAMAWRAGCRVANL 238 (540)
T ss_dssp CGGGCSCHHHHHHHHTTCCEECT
T ss_pred CCCCCchHHHHHHHHcCCCCcCh
Confidence 44457788888864 88877654
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=97.70 E-value=2.5e-05 Score=89.50 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=43.1
Q ss_pred hhccCCCCccccccc----hhhHHHHHHHHHcCC--CCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 382 ARKYRPSNFNTLIGQ----NHISKSLINALDKKR--LHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 382 ~~k~~p~~f~~lvGq----~~~~~~L~~~l~~~~--~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
...+++.+|+++++. ..++..+.+.+.... ....++|+||+|+|||++++++++.+.
T Consensus 115 ~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 115 PKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344567899999863 445566666776531 245789999999999999999999886
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00017 Score=90.08 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHcccCeeEEec-ccceEEEeC-CeEEEEEeC--CCc--EEEcceEEEecccCCCceeEecccccC--
Q psy13354 805 DRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKT-NKILGVVTK--IGI--KFFSKTVILTTGTFLNGKIHIGLKSYS-- 876 (1342)
Q Consensus 805 d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~-~~~~gv~~~--~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~-- 876 (1342)
+...+.+.+.+.++. .+++|+.+ +|++|+.++ ++|.||++. +|+ .+.|+.||+|||-|-+-.=.+-. +.+
T Consensus 248 ~~~~l~~~L~~~~~~-~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~~~~~~~-~~p~~ 325 (566)
T 1qo8_A 248 SGPEIIDTLRKAAKE-QGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMIAY-YRPTM 325 (566)
T ss_dssp HHHHHHHHHHHHHHH-TTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHHHHHH-HCGGG
T ss_pred CHHHHHHHHHHHHHh-cCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccCHHHHHH-hCccc
Confidence 344455555555554 48999776 799999998 999999876 675 69999999999944321000000 100
Q ss_pred --CCCCCCcchHHHHHHHHH-cCCCcccc
Q psy13354 877 --AGRFGDFSTTSLAKRLKE-LQLSHGRL 902 (1342)
Q Consensus 877 --~g~~g~~~s~~l~~~l~~-~g~~~~~~ 902 (1342)
...++...++|.+..++. +|..+..+
T Consensus 326 ~~~~~~~~~~~tGdg~~~a~~~Ga~~~~~ 354 (566)
T 1qo8_A 326 KDMTSSNNITATGDGVLMAKEIGASMTDI 354 (566)
T ss_dssp TTCEECSCTTCSCHHHHHHHHTTBCEEST
T ss_pred cCCcccCCCCCCcHHHHHHHHcCCeEecC
Confidence 012334446677777754 78766543
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00022 Score=89.21 Aligned_cols=94 Identities=13% Similarity=0.001 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHcccCeeEEec-ccceEEEeC-CeEEEEEeC--CCc--EEEcceEEEecccCCCceeEeccccc---CC
Q psy13354 807 ILYKQAIRFYLENQLNLYLFQE-EVDDLIIKT-NKILGVVTK--IGI--KFFSKTVILTTGTFLNGKIHIGLKSY---SA 877 (1342)
Q Consensus 807 ~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~-~~~~gv~~~--~g~--~~~~~~vii~tGtfl~g~~~~g~~~~---~~ 877 (1342)
..+.+.+.+.++. .+++|+.+ +|++|+.++ ++|.||++. +|+ .+.|+.||+|||-|-+-.=.+-...+ ..
T Consensus 255 ~~l~~~L~~~~~~-~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n~~~~~~~~p~~~~~ 333 (571)
T 1y0p_A 255 AHVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGF 333 (571)
T ss_dssp HHHHHHHHHHHHH-TTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTC
T ss_pred HHHHHHHHHHHHh-cCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcccCHHHHHHhCccccCC
Confidence 3444555555554 58999776 799999887 899999876 575 69999999999944321100000000 11
Q ss_pred CCCCCcchHHHHHHHHH-cCCCccc
Q psy13354 878 GRFGDFSTTSLAKRLKE-LQLSHGR 901 (1342)
Q Consensus 878 g~~g~~~s~~l~~~l~~-~g~~~~~ 901 (1342)
.+.+...++|.+..+.. .|..+..
T Consensus 334 ~~~~~~~~tGdg~~~a~~~Ga~~~~ 358 (571)
T 1y0p_A 334 ISTNQPGAVGDGLDVAENAGGALKD 358 (571)
T ss_dssp CBCSCTTCSSHHHHHHHHTTCCEEC
T ss_pred cccCCCCCchHHHHHHHHcCCcEeC
Confidence 34455557788888864 8887765
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00016 Score=91.33 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=51.6
Q ss_pred cCeeEEec-ccceEEEeCCeEEEEEe---CCCc--EEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHH
Q psy13354 821 LNLYLFQE-EVDDLIIKTNKILGVVT---KIGI--KFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKE 894 (1342)
Q Consensus 821 ~~~~i~~~-~v~~l~~~~~~~~gv~~---~~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~ 894 (1342)
.|++|+.+ .|.+|+.++++|.||++ .+|+ .+.|++||+|||-|-+ .+ .-+++...++|.+..++-
T Consensus 171 ~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~-------~y--~~tt~~~~~tGdG~~mA~ 241 (660)
T 2bs2_A 171 LGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR-------IY--KNTTNAVVCEGTGTAIAL 241 (660)
T ss_dssp HTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGG-------GS--SSBSSCTTCSCHHHHHHH
T ss_pred CCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchh-------hc--CCCCCCCCcccHHHHHHH
Confidence 48999777 79999999999999976 4676 4999999999993322 11 113344457788888864
Q ss_pred -cCC-Ccc
Q psy13354 895 -LQL-SHG 900 (1342)
Q Consensus 895 -~g~-~~~ 900 (1342)
.|. .+.
T Consensus 242 ~aGa~~l~ 249 (660)
T 2bs2_A 242 ETGIAQLG 249 (660)
T ss_dssp TTSSSCEE
T ss_pred HcCCChhc
Confidence 787 654
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00019 Score=90.56 Aligned_cols=85 Identities=11% Similarity=0.084 Sum_probs=56.8
Q ss_pred HHHHHHHHcc-cCeeEEec-ccceEEEeCC---eEEEEEe---CCCc--EEEcceEEEecccCCCceeEecccccCC-C-
Q psy13354 811 QAIRFYLENQ-LNLYLFQE-EVDDLIIKTN---KILGVVT---KIGI--KFFSKTVILTTGTFLNGKIHIGLKSYSA-G- 878 (1342)
Q Consensus 811 ~~~~~~~~~~-~~~~i~~~-~v~~l~~~~~---~~~gv~~---~~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~~-g- 878 (1342)
+.+.+.+++. +|++|+.+ .|.+|+.+++ +|.||.. .+|+ .+.|++||||||-|-+ .+.++ -
T Consensus 170 ~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~-------~y~~~t~~ 242 (662)
T 3gyx_A 170 VIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVN-------VYRPRSVG 242 (662)
T ss_dssp HHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS-------SSCCSCCS
T ss_pred HHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccc-------cccCcCCc
Confidence 3333344444 49999887 7999999987 9999975 3454 5899999999993321 13321 1
Q ss_pred -----CCCCcchHHHHHHHHH-cCCCcccc
Q psy13354 879 -----RFGDFSTTSLAKRLKE-LQLSHGRL 902 (1342)
Q Consensus 879 -----~~g~~~s~~l~~~l~~-~g~~~~~~ 902 (1342)
.++...++|.+..++. +|..+..+
T Consensus 243 ~~~~~~~~~~~~tGdG~~mA~~aGA~l~~m 272 (662)
T 3gyx_A 243 EGMGRAWYPVWNAGSTYTMCAQVGAEMTMM 272 (662)
T ss_dssp GGGGCCSSCTTCBSHHHHHHHTTTCEEECT
T ss_pred cccccccCCCCCcchHHHHHHHhCCcccCC
Confidence 2234557888888865 78766544
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0026 Score=90.66 Aligned_cols=168 Identities=14% Similarity=0.131 Sum_probs=115.2
Q ss_pred hhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccC
Q psy13354 397 NHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476 (1342)
Q Consensus 397 ~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~ 476 (1342)
++....+..++..+. +.++.||+|||||++++.+|+.++. .++.++++
T Consensus 632 dr~~~tl~~Al~~~~---~~~l~GpaGtGKTe~vk~LA~~lg~-----------------------------~~v~~nc~ 679 (2695)
T 4akg_A 632 LIGFATLTDSLHQKY---GGCFFGPAGTGKTETVKAFGQNLGR-----------------------------VVVVFNCD 679 (2695)
T ss_dssp HHHHHHHHHHHHTTC---EEEEECCTTSCHHHHHHHHHHTTTC-----------------------------CCEEEETT
T ss_pred HHHHHHHHHHHHhCC---CCcccCCCCCCcHHHHHHHHHHhCC-----------------------------cEEEEECC
Confidence 667788888888763 3588999999999999999999973 46778887
Q ss_pred CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHH-------HhhcC-------------CCCcEEEEEEe
Q psy13354 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAML-------KTLEE-------------PPKYIKFILAT 536 (1342)
Q Consensus 477 ~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll-------~~Le~-------------p~~~~vlIl~t 536 (1342)
......++..++..+.... -.+++||++.+..+...++. ..+.+ .+++..++++.
T Consensus 680 e~ld~~~lg~~~~g~~~~G-----aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~ 754 (2695)
T 4akg_A 680 DSFDYQVLSRLLVGITQIG-----AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITL 754 (2695)
T ss_dssp SSCCHHHHHHHHHHHHHHT-----CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEE
T ss_pred CCCChhHhhHHHHHHHhcC-----CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEe
Confidence 7777777777765554332 48999999999988766552 22211 12344455555
Q ss_pred C----CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH-------hc------CCcHHHHHH
Q psy13354 537 T----EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT-------GA------QGSMRDALS 599 (1342)
Q Consensus 537 ~----~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~-------~~------~g~lr~a~~ 599 (1342)
| ....++..+++||..+.+..|+.+.+.+++.. ..|....+.....++. .. +-.+|.+.+
T Consensus 755 NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalks 831 (2695)
T 4akg_A 755 NPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKG 831 (2695)
T ss_dssp CCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHH
T ss_pred CCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHH
Confidence 5 34578899999999999999999888887532 3455444444333332 11 236777766
Q ss_pred HHHHH
Q psy13354 600 LTDQA 604 (1342)
Q Consensus 600 ~L~kl 604 (1342)
.|..+
T Consensus 832 vL~~a 836 (2695)
T 4akg_A 832 VLRNC 836 (2695)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00054 Score=71.67 Aligned_cols=72 Identities=11% Similarity=0.221 Sum_probs=51.1
Q ss_pred ccCCceEEEeccCc---cCCHHHHHHHHHhhcCCCCcEEEEEEeC--CCCCChHHHhcc--EEEEEEcCCCHHHHHHHHH
Q psy13354 496 INARYKIYVIDEVH---MLTHHAFNAMLKTLEEPPKYIKFILATT--EPQKIPITVLSR--CIQFNLKKMLHHDIVNNLC 568 (1342)
Q Consensus 496 ~~~~~rvviIDE~~---~L~~~~~~~Ll~~Le~p~~~~vlIl~t~--~~~kl~~~L~sR--~~~i~~~~l~~~el~~~l~ 568 (1342)
+..+++++++||++ .++....+.+.+.+++. ..+ +|+++. ....+...+.+| +.++++.+.+.+++...+.
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~-~~~-~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP-NVN-VVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT-TSE-EEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcC-CCe-EEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 34567899999953 45677888999999884 333 455553 334566788888 7899999888777766554
Q ss_pred H
Q psy13354 569 Y 569 (1342)
Q Consensus 569 ~ 569 (1342)
+
T Consensus 174 ~ 174 (178)
T 1ye8_A 174 S 174 (178)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00097 Score=81.73 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 809 YKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 809 y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
+.+.+.+.++. -+.+|+.+ +|++|.+++++++||++.+|+++.||.||.+++
T Consensus 223 l~~aL~~~~~~-~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~ 275 (501)
T 4dgk_A 223 LVQGMIKLFQD-LGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNAD 275 (501)
T ss_dssp HHHHHHHHHHH-TTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC
T ss_pred hHHHHHHHHHH-hCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCC
Confidence 34555566654 46778555 899999999999999999999999999999988
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0033 Score=90.18 Aligned_cols=174 Identities=11% Similarity=0.139 Sum_probs=110.7
Q ss_pred HHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHH
Q psy13354 403 LINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN 482 (1342)
Q Consensus 403 L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~ 482 (1342)
+...+..+ +.+||+||+|||||.++..+...+. ...+..++.++.+...
T Consensus 1297 l~~ll~~~---~pvLL~GptGtGKT~li~~~L~~l~----------------------------~~~~~~infS~~Tta~ 1345 (3245)
T 3vkg_A 1297 LHAWLSEH---RPLILCGPPGSGKTMTLTSTLRAFP----------------------------DFEVVSLNFSSATTPE 1345 (3245)
T ss_dssp HHHHHHTT---CCCEEESSTTSSHHHHHHHHGGGCT----------------------------TEEEEEECCCTTCCHH
T ss_pred HHHHHHCC---CcEEEECCCCCCHHHHHHHHHHhCC----------------------------CCceEEEEeeCCCCHH
Confidence 34444554 3379999999999988765543331 0246678888777777
Q ss_pred HHHHHHHHHh-----------hcCcc-CCceEEEeccCccCCH------HHHHHHHHhhcC-----C-------CCcEEE
Q psy13354 483 EMAQLLEQTI-----------YAPIN-ARYKIYVIDEVHMLTH------HAFNAMLKTLEE-----P-------PKYIKF 532 (1342)
Q Consensus 483 ~i~~ii~~~~-----------~~p~~-~~~rvviIDE~~~L~~------~~~~~Ll~~Le~-----p-------~~~~vl 532 (1342)
.+...++... ..|.. +++-|++|||+++-.. ...+.|..+++. + -.++.+
T Consensus 1346 ~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~ 1425 (3245)
T 3vkg_A 1346 LLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQF 1425 (3245)
T ss_dssp HHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEE
T ss_pred HHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEE
Confidence 7776665321 12332 4455888999987643 255666666653 1 135667
Q ss_pred EEEeCCC-----CCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCC------CcchhHHHHHHHh------------
Q psy13354 533 ILATTEP-----QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENI------KFETSALNLIATG------------ 589 (1342)
Q Consensus 533 Il~t~~~-----~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~------~i~~~al~~La~~------------ 589 (1342)
|.++|.+ ..+.+++.+|+.++.++.|+.+++..+...++...-. .+.+..++...+.
T Consensus 1426 vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~ 1505 (3245)
T 3vkg_A 1426 VGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDI 1505 (3245)
T ss_dssp EEEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTT
T ss_pred EEEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 7777654 4678999999999999999999999987665543211 1112222222221
Q ss_pred ---cCCcHHHHHHHHHHHHhh
Q psy13354 590 ---AQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 590 ---~~g~lr~a~~~L~kl~~~ 607 (1342)
.--|+|++.+.++-++.+
T Consensus 1506 k~HY~FnLRDLsrv~qGll~~ 1526 (3245)
T 3vkg_A 1506 QAHYIYSPRELSRWDRALLEA 1526 (3245)
T ss_dssp STTCCCCHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHh
Confidence 124899998888766543
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0082 Score=75.16 Aligned_cols=206 Identities=15% Similarity=0.122 Sum_probs=105.7
Q ss_pred hhccCCCCccccccchhhHHHHHHHHHcC-CCCcEEEEEccCcccHHHHHHHHHHHhcc-CCCCCCCCcccCCCCCCcc-
Q psy13354 382 ARKYRPSNFNTLIGQNHISKSLINALDKK-RLHHAYLFTGTRGVGKTTISRILAKCLNC-IGIDGNGGITSQPCGKCSV- 458 (1342)
Q Consensus 382 ~~k~~p~~f~~lvGq~~~~~~L~~~l~~~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~-~~~~~~~~~~~~~c~~~~~- 458 (1342)
.....|.....++|.+..++.|.+.+... .-...++++|+.|+|||++|..+++.... ..... ++.....+.....
T Consensus 115 ~~~~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~v~wv~~~~~~~~ 193 (591)
T 1z6t_A 115 CEGGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFP-GGVHWVSVGKQDKS 193 (591)
T ss_dssp HHTTCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCT-TCEEEEEEESCCHH
T ss_pred ccCCCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCC-CceEEEECCCCchH
Confidence 34456777788999999999999999742 23467999999999999999998753210 00000 0000000000000
Q ss_pred --hhhhccC-CCccE-EEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEE
Q psy13354 459 --CVKIDNG-CFMDY-IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFIL 534 (1342)
Q Consensus 459 --~~~~~~~-~~~d~-~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl 534 (1342)
...+... ..... ...........+.+.+.+...... ..++-+||+|+++.. ..++.+ ++.+.+|+
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~LLVLDdv~~~------~~l~~l---~~~~~ilv 262 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR--KHPRSLLILDDVWDS------WVLKAF---DSQCQILL 262 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH--TCTTCEEEEEEECCH------HHHHTT---CSSCEEEE
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc--CCCCeEEEEeCCCCH------HHHHHh---cCCCeEEE
Confidence 0000000 00000 000000111122222222211110 113458999999852 123333 44566677
Q ss_pred EeCCCCCChHHHhccEEEEE-EcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHH
Q psy13354 535 ATTEPQKIPITVLSRCIQFN-LKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLT 601 (1342)
Q Consensus 535 ~t~~~~kl~~~L~sR~~~i~-~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L 601 (1342)
+|.... ...........+. ..+++.++..+.+...+... ..-.++.+..|++.++|.+..+....
T Consensus 263 TsR~~~-~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a 328 (591)
T 1z6t_A 263 TTRDKS-VTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIG 328 (591)
T ss_dssp EESCGG-GGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHH
T ss_pred ECCCcH-HHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHH
Confidence 665433 1111112222222 25899999999988776431 11225678899999999998776443
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0016 Score=69.21 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=41.5
Q ss_pred CCceEEEeccCccC--CH-HH--HHHHHHhhcCC-CCcEEEEEEeCCCCCChHHHhccE-EEEEEcCC
Q psy13354 498 ARYKIYVIDEVHML--TH-HA--FNAMLKTLEEP-PKYIKFILATTEPQKIPITVLSRC-IQFNLKKM 558 (1342)
Q Consensus 498 ~~~rvviIDE~~~L--~~-~~--~~~Ll~~Le~p-~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l 558 (1342)
+...||||||++.+ +. +. ...++..++.. .....+|+++..++.+...|++|+ ..+++.++
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 34669999999987 32 11 11355555543 334567888888888989999998 56777663
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00064 Score=71.50 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=35.5
Q ss_pred CceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCC------CChHHHhccE-EEEEEcCC
Q psy13354 499 RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQ------KIPITVLSRC-IQFNLKKM 558 (1342)
Q Consensus 499 ~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~------kl~~~L~sR~-~~i~~~~l 558 (1342)
+..+|+|||+++++.+..+.|....++ ...+|++....+ ...+.|.+++ .+.++...
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~i 139 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAV 139 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCBC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhhheEEeeee
Confidence 567999999999977777777777766 233444332222 2234677777 45555443
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0098 Score=73.72 Aligned_cols=193 Identities=12% Similarity=0.073 Sum_probs=97.1
Q ss_pred ccchhhHHHHHHHHHcC--CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc---chhh----hcc
Q psy13354 394 IGQNHISKSLINALDKK--RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS---VCVK----IDN 464 (1342)
Q Consensus 394 vGq~~~~~~L~~~l~~~--~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~---~~~~----~~~ 464 (1342)
+|.+..++.|.+.+..+ .-...+.++|+.|+|||++|+.+++.........+.+. ...|..-. .... +..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~-~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSI-VWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEE-EEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcE-EEEEECCCCCCCHHHHHHHHHH
Confidence 49999999999998654 23467899999999999999999973110000000000 00000000 0000 000
Q ss_pred --CCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCC-ceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCC
Q psy13354 465 --GCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR-YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQK 541 (1342)
Q Consensus 465 --~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~-~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~k 541 (1342)
+...+............+.+...+... +.++ +-+||+|+++.... . .+... +...+|+||... .
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~~kr~LlVLDdv~~~~~--~-~~~~~-----~gs~ilvTTR~~-~ 276 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNA----LIDRPNTLFVFDDVVQEET--I-RWAQE-----LRLRCLVTTRDV-E 276 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHH----HTTSTTEEEEEEEECCHHH--H-HHHHH-----TTCEEEEEESBG-G
T ss_pred HHhcCcccccccccccccHHHHHHHHHHH----HcCCCcEEEEEECCCCchh--h-ccccc-----CCCEEEEEcCCH-H
Confidence 000000000000000011111111111 1233 55888999987432 1 22211 345566666542 2
Q ss_pred ChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCC-CcchhHHHHHHHhcCCcHHHHHHH
Q psy13354 542 IPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENI-KFETSALNLIATGAQGSMRDALSL 600 (1342)
Q Consensus 542 l~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~-~i~~~al~~La~~~~g~lr~a~~~ 600 (1342)
+..........+++.+++.++..+.+.+++-.... .-.++....|++.++|.+..+...
T Consensus 277 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 277 ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Confidence 22222123367999999999998888766422211 112346788899999999877644
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.025 Score=77.22 Aligned_cols=190 Identities=13% Similarity=0.126 Sum_probs=109.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcC-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKK-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
..++...--|.....++|.+..++.|.+.+... .-...+.|+|+.|+|||++|+.+++...... .|..+
T Consensus 111 ~~~l~~~~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~----------~~~~~ 180 (1249)
T 3sfz_A 111 RTVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLE----------GCFSG 180 (1249)
T ss_dssp HHHHHHTTCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHT----------TTSTT
T ss_pred hheeccCCCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHH----------hhCCC
Confidence 344555667878888999999999999999643 3346789999999999999998876531000 00000
Q ss_pred cchhhhccCCCccEEEEccC-------------------------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccC
Q psy13354 457 SVCVKIDNGCFMDYIEMDAA-------------------------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHML 511 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~-------------------------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L 511 (1342)
.. -++.+... .....+.+.+.+.... .-..++-+||+|+++..
T Consensus 181 ~~----------~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~~~LlvlDd~~~~ 248 (1249)
T 3sfz_A 181 GV----------HWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLM--LRKHPRSLLILDDVWDP 248 (1249)
T ss_dssp CE----------EEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT--SSSSCSCEEEEESCCCH
T ss_pred eE----------EEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHH--hccCCCEEEEEecCCCH
Confidence 00 01111000 0011122222222111 00122558899999843
Q ss_pred CHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcC-CCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhc
Q psy13354 512 THHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKK-MLHHDIVNNLCYILNKENIKFETSALNLIATGA 590 (1342)
Q Consensus 512 ~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~-l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~ 590 (1342)
..+ +..++...+|++|.... +..........+...+ ++.++-.+.+...+....-. .++....|++.+
T Consensus 249 -----~~~----~~~~~~~~ilvTtR~~~-~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~ 317 (1249)
T 3sfz_A 249 -----WVL----KAFDNQCQILLTTRDKS-VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKEC 317 (1249)
T ss_dssp -----HHH----TTTCSSCEEEEEESSTT-TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHT
T ss_pred -----HHH----HhhcCCCEEEEEcCCHH-HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHh
Confidence 112 22244566677766543 2222223335677775 99999988888776433222 345688899999
Q ss_pred CCcHHHHHHH
Q psy13354 591 QGSMRDALSL 600 (1342)
Q Consensus 591 ~g~lr~a~~~ 600 (1342)
+|.+..+...
T Consensus 318 ~glPLal~~~ 327 (1249)
T 3sfz_A 318 KGSPLVVSLI 327 (1249)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9988876543
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.12 Score=74.69 Aligned_cols=170 Identities=14% Similarity=0.078 Sum_probs=113.6
Q ss_pred chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEcc
Q psy13354 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDA 475 (1342)
Q Consensus 396 q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~ 475 (1342)
-+++.-+|..++..+.. -.+.||.|||||++++.+|+.++. .++.+++
T Consensus 590 Tdrcy~tl~~Al~~~~g---g~~~GPaGtGKTet~k~La~~lgr-----------------------------~~~vfnC 637 (3245)
T 3vkg_A 590 TDRCYLTLTQALESRMG---GNPFGPAGTGKTETVKALGSQLGR-----------------------------FVLVFCC 637 (3245)
T ss_dssp HHHHHHHHHHHHHTTCE---EEEECSTTSSHHHHHHHHHHHTTC-----------------------------CEEEEEC
T ss_pred HHHHHHHHHHHHHhcCC---CCCCCCCCCCHHHHHHHHHHHhCC-----------------------------eEEEEeC
Confidence 37788889999987643 368899999999999999999983 3567777
Q ss_pred CCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhc-----------------C----CCCcEEEEE
Q psy13354 476 ASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLE-----------------E----PPKYIKFIL 534 (1342)
Q Consensus 476 ~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le-----------------~----p~~~~vlIl 534 (1342)
+.......+..++.-+... .-..++||++++..+....+...+. . -.+.+.+++
T Consensus 638 ~~~~d~~~~g~i~~G~~~~-----GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfi 712 (3245)
T 3vkg_A 638 DEGFDLQAMSRIFVGLCQC-----GAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFV 712 (3245)
T ss_dssp SSCCCHHHHHHHHHHHHHH-----TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEE
T ss_pred CCCCCHHHHHHHHhhHhhc-----CcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEE
Confidence 7666555665555443321 1267999999999876655443221 1 122343444
Q ss_pred EeC----CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH---h----------cCCcHHHH
Q psy13354 535 ATT----EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT---G----------AQGSMRDA 597 (1342)
Q Consensus 535 ~t~----~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~---~----------~~g~lr~a 597 (1342)
+.| ....++..+++++..+.+..|+.+.+.+++ +-..|..-.......++. . .+-.||.+
T Consensus 713 TmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~---L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRal 789 (3245)
T 3vkg_A 713 TMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVM---LYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRAL 789 (3245)
T ss_dssp CBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHH---HHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHH
T ss_pred EeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHH---HHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHH
Confidence 444 245889999999999999999998888875 446676433333222222 1 12468888
Q ss_pred HHHHHHHH
Q psy13354 598 LSLTDQAI 605 (1342)
Q Consensus 598 ~~~L~kl~ 605 (1342)
.+.|.-+.
T Consensus 790 KsVL~~AG 797 (3245)
T 3vkg_A 790 KSVLVSAG 797 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776544
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.013 Score=63.32 Aligned_cols=111 Identities=15% Similarity=0.099 Sum_probs=57.2
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCC--CccEEEEccCCCcCHHHHHHHHHH
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGC--FMDYIEMDAASTRGINEMAQLLEQ 490 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~--~~d~~~i~~~~~~~~~~i~~ii~~ 490 (1342)
...++++|++|+||||++..++..+...+.... ..++..... ....+.+.. ...-..+ ....++.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVl-i~~~~~d~r--~~~~i~srlG~~~~~~~~--------~~~~~i~~~ 80 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYL-VFKPKIDTR--SIRNIQSRTGTSLPSVEV--------ESAPEILNY 80 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE-EEEECCCGG--GCSSCCCCCCCSSCCEEE--------SSTHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE-EEEeccCch--HHHHHHHhcCCCcccccc--------CCHHHHHHH
Confidence 457899999999999999988888753321100 000000000 000111000 0011111 112334444
Q ss_pred HhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 491 TIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 491 ~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+.......++.+|+|||+++++.+..+.+..+.+. .+.+|++..
T Consensus 81 i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~---gi~Vil~Gl 124 (223)
T 2b8t_A 81 IMSNSFNDETKVIGIDEVQFFDDRICEVANILAEN---GFVVIISGL 124 (223)
T ss_dssp HHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEECC
T ss_pred HHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhC---CCeEEEEec
Confidence 44333334578999999999987766666444443 344555543
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.064 Score=55.47 Aligned_cols=54 Identities=11% Similarity=-0.049 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHcccCeeEEecccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 805 DRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 805 d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
+...+.+.+++.+++ .+++++.++|+++..+++. ..|.+.+| ++.+|.||+|||
T Consensus 54 ~~~~~~~~l~~~~~~-~gv~v~~~~v~~i~~~~~~-~~v~~~~g-~i~ad~vI~A~G 107 (180)
T 2ywl_A 54 SGEELLRRLEAHARR-YGAEVRPGVVKGVRDMGGV-FEVETEEG-VEKAERLLLCTH 107 (180)
T ss_dssp CHHHHHHHHHHHHHH-TTCEEEECCCCEEEECSSS-EEEECSSC-EEEEEEEEECCT
T ss_pred CHHHHHHHHHHHHHH-cCCEEEeCEEEEEEEcCCE-EEEEECCC-EEEECEEEECCC
Confidence 345566777777765 4689977799999876554 46788888 899999999999
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.018 Score=71.41 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..++++|+||||||+++..++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 56899999999999999999988763
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.064 Score=58.52 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=20.1
Q ss_pred EEEEccCcccHHHHHHHHHHHh
Q psy13354 416 YLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L 437 (1342)
.+++||+|+|||.++..++..+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7999999999999999888776
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.095 Score=67.86 Aligned_cols=44 Identities=23% Similarity=0.158 Sum_probs=38.0
Q ss_pred cccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHH
Q psy13354 393 LIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKC 436 (1342)
Q Consensus 393 lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~ 436 (1342)
.+|.+..++.|.+.+........+.++|+.|+|||++|+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 39999999999999976444578999999999999999999863
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.058 Score=56.67 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=48.6
Q ss_pred ccCCceEEEeccCccC---CHHHHHHHHHhhcCCCCcEEEE--EEe-CCC-CCChHHHhcc--EEEEEEcCCCHHHHHHH
Q psy13354 496 INARYKIYVIDEVHML---THHAFNAMLKTLEEPPKYIKFI--LAT-TEP-QKIPITVLSR--CIQFNLKKMLHHDIVNN 566 (1342)
Q Consensus 496 ~~~~~rvviIDE~~~L---~~~~~~~Ll~~Le~p~~~~vlI--l~t-~~~-~kl~~~L~sR--~~~i~~~~l~~~el~~~ 566 (1342)
...++.++|+||+..+ +....+.|.++++...+ + ++ ++. .+. ..+...+..+ +.++++.+-+.+.+..-
T Consensus 102 ~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~-~-ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~ 179 (189)
T 2i3b_A 102 SGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGT-I-ILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPD 179 (189)
T ss_dssp CSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSC-C-EEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHH
T ss_pred hccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCc-E-EEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHH
Confidence 3567789999997655 44567888888886532 3 32 221 332 2566777664 48899988887777766
Q ss_pred HHHHH
Q psy13354 567 LCYIL 571 (1342)
Q Consensus 567 l~~~~ 571 (1342)
+...+
T Consensus 180 i~~~~ 184 (189)
T 2i3b_A 180 IVTCV 184 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65444
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.033 Score=62.96 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.1
Q ss_pred cEEEEEccCcccHHHHHHHHHHH
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKC 436 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~ 436 (1342)
..++|+||||+|||+++..++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45799999999999999999987
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.025 Score=67.82 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHHHHcccCeeEEec----ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 803 QVDRILYKQAIRFYLENQLNLYLFQE----EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 803 q~d~~~y~~~~~~~~~~~~~~~i~~~----~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
++|...+-+.+.+.+++ .+++|+.+ +|++|..+++++.||.|.+|.++.||.||+|||
T Consensus 157 ~~~~~~~~~~L~~~a~~-~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG 218 (438)
T 3dje_A 157 WAHARNALVAAAREAQR-MGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAG 218 (438)
T ss_dssp EECHHHHHHHHHHHHHH-TTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCG
T ss_pred EecHHHHHHHHHHHHHh-cCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCC
Confidence 66777777777777765 47999766 799999999999999999998899999999999
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.41 Score=54.79 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEeccc
Q psy13354 805 DRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGT 862 (1342)
Q Consensus 805 d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGt 862 (1342)
.+..+.+++++.++. .+++++.+ +|+++..+++.+.+|.+.+| .+.+|.||+|||.
T Consensus 74 ~~~~~~~~l~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~ 130 (357)
T 4a9w_A 74 ARAEVLAYLAQYEQK-YALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGT 130 (357)
T ss_dssp BHHHHHHHHHHHHHH-TTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCS
T ss_pred CHHHHHHHHHHHHHH-cCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCC
Confidence 466777777777765 47888665 89999988888777888887 8999999999994
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.21 Score=53.53 Aligned_cols=168 Identities=14% Similarity=0.139 Sum_probs=83.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCC--ccEEEEccCCCcCHHHHHHHHHHH
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF--MDYIEMDAASTRGINEMAQLLEQT 491 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~--~d~~~i~~~~~~~~~~i~~ii~~~ 491 (1342)
..+++.|++|+|||+++-.++..+...+.... ..+-++-+.......+..... ...+.++.... ...++..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~-v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~-~e~~l~~~L~-- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM-AGVVETHGRAETEALLNGLPQQPLLRTEYRGMTL-EEMDLDALLK-- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE-EEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEE-EECCHHHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE-EEEeCCCCChhHHHHhcCccccCcceeecCCccc-ccccHHHHHh--
Confidence 45899999999999999999998865432210 001111111111111111111 11112211100 0012333332
Q ss_pred hhcCccCCceEEEeccCccCCHH------HHHHHHHhhcCCCCcEEEEEEeC------------------CCCCChHHHh
Q psy13354 492 IYAPINARYKIYVIDEVHMLTHH------AFNAMLKTLEEPPKYIKFILATT------------------EPQKIPITVL 547 (1342)
Q Consensus 492 ~~~p~~~~~rvviIDE~~~L~~~------~~~~Ll~~Le~p~~~~vlIl~t~------------------~~~kl~~~L~ 547 (1342)
.++.++||||+...+.. .+..+...++.. +-++.++| -.+.++..+.
T Consensus 83 ------~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sg---idVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~ 153 (228)
T 2r8r_A 83 ------AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAG---IDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVL 153 (228)
T ss_dssp ------HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTT---CEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHH
T ss_pred ------cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCC---CCEEEEccccccccHHHHHHHHcCCCcCCcCccHHH
Confidence 13569999997754211 233333344432 23445554 1245677888
Q ss_pred ccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchh-HHHHHHHh-cCCcHHHHHH
Q psy13354 548 SRCIQFNLKKMLHHDIVNNLCYILNKENIKFETS-ALNLIATG-AQGSMRDALS 599 (1342)
Q Consensus 548 sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~-al~~La~~-~~g~lr~a~~ 599 (1342)
.++..+.+-.++++++.+.+ ++|..+.++ +-..+..+ ..+|+-.+..
T Consensus 154 ~~a~~v~lvD~~p~~l~~rl-----~~g~vy~~~~~~~a~~~~f~~~nl~~lre 202 (228)
T 2r8r_A 154 QEAFDLVLIDLPPRELLERL-----RDGKVYVPEQARAAIDAFFTQTNLTALRE 202 (228)
T ss_dssp HTCSEEEEBCCCHHHHHHHH-----HTTCCCCTTCCHHHHHHHCCHHHHHHHHH
T ss_pred hhCCeEEEecCCHHHHHHHH-----HCCCccChhHHHHHHHhhhchhhHHHHHH
Confidence 88877888888888877664 345443333 33333333 3455554443
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.068 Score=66.44 Aligned_cols=95 Identities=12% Similarity=0.030 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcccCeeEEec-ccceEEEeC-CeEEEEEeC--CCc--EEEcceEEEecccCCCceeEeccccc---CC
Q psy13354 807 ILYKQAIRFYLENQLNLYLFQE-EVDDLIIKT-NKILGVVTK--IGI--KFFSKTVILTTGTFLNGKIHIGLKSY---SA 877 (1342)
Q Consensus 807 ~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~-~~~~gv~~~--~g~--~~~~~~vii~tGtfl~g~~~~g~~~~---~~ 877 (1342)
..+.+.+.+.+++ .+++|+.+ +|++|+.++ ++|.||++. +|+ .+.|+.||+|||-|-+-.=.+-...+ ..
T Consensus 255 ~~l~~~L~~~~~~-~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~p~~~~~ 333 (572)
T 1d4d_A 255 AHVAQVLWDNAVK-RGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGF 333 (572)
T ss_dssp HHHHHHHHHHHHH-TTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTC
T ss_pred HHHHHHHHHHHHH-cCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccCHHHHHHhCccccCC
Confidence 3444555555554 48999766 799999888 899999876 564 69999999999944321000000000 12
Q ss_pred CCCCCcchHHHHHHHHH-cCCCcccc
Q psy13354 878 GRFGDFSTTSLAKRLKE-LQLSHGRL 902 (1342)
Q Consensus 878 g~~g~~~s~~l~~~l~~-~g~~~~~~ 902 (1342)
+.++...++|.+..+.. +|..+..+
T Consensus 334 ~~~~~~~~tGdgi~~a~~~Ga~~~~~ 359 (572)
T 1d4d_A 334 KATNHPGATGDGLDVALQAGAATRDL 359 (572)
T ss_dssp CBSSCTTCSSHHHHHHHHTTBCEECT
T ss_pred CccCCCCCccHHHHHHHHcCCeEeCC
Confidence 33445556777777754 78776543
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.058 Score=67.48 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.1
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+.++++|++|||||+++..+...+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999998887775
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.081 Score=65.92 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=56.7
Q ss_pred HHHHHHHHcccCeeEEec-ccceEEEe-CCeEEEEEe---CCCc--EEEcceEEEecccCCCceeEecccccCCCCCCCc
Q psy13354 811 QAIRFYLENQLNLYLFQE-EVDDLIIK-TNKILGVVT---KIGI--KFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 883 (1342)
Q Consensus 811 ~~~~~~~~~~~~~~i~~~-~v~~l~~~-~~~~~gv~~---~~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~ 883 (1342)
+.+.+.+.+ .|++|+.+ +|++|+.+ +++|.||.. .+|+ .+.|+.||+|||-|-+ .+.. .++..
T Consensus 147 ~~L~~~~~~-~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~-------~y~~--~~~~~ 216 (588)
T 2wdq_A 147 HTLYQQNLK-NHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR-------IYQS--TTNAH 216 (588)
T ss_dssp HHHHHHHHH-TTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGG-------GSSS--BSSCT
T ss_pred HHHHHHHHh-CCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCcc-------ccCC--cCCCC
Confidence 333344443 48999776 79999996 789999985 4565 5999999999993321 2222 23445
Q ss_pred chHHHHHHHHH-cCCCcccc
Q psy13354 884 STTSLAKRLKE-LQLSHGRL 902 (1342)
Q Consensus 884 ~s~~l~~~l~~-~g~~~~~~ 902 (1342)
.++|.+..++. +|..+..+
T Consensus 217 ~~tGdG~~ma~~aGa~l~~m 236 (588)
T 2wdq_A 217 INTGDGVGMAIRAGVPVQDM 236 (588)
T ss_dssp TCCCHHHHHHHHTTCCEECT
T ss_pred CchHHHHHHHHHcCCCEeCh
Confidence 57788888864 88876653
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.15 Score=54.88 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.3
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+.|.||+|+||||+.+.++..+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999998764
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.083 Score=64.71 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcccCeeEEec-ccceEEEe-CCeEEEEEeCCCc---EEEcc-eEEEecccCCCceeEeccc---ccCCCC
Q psy13354 809 YKQAIRFYLENQLNLYLFQE-EVDDLIIK-TNKILGVVTKIGI---KFFSK-TVILTTGTFLNGKIHIGLK---SYSAGR 879 (1342)
Q Consensus 809 y~~~~~~~~~~~~~~~i~~~-~v~~l~~~-~~~~~gv~~~~g~---~~~~~-~vii~tGtfl~g~~~~g~~---~~~~g~ 879 (1342)
+.+.+.+.+++. |++|+.+ +|++|+.+ +++|+||++.++. ++.|+ .||||||.|-.-.=.+-.. .+....
T Consensus 204 l~~~L~~~~~~~-Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~n~~m~~~~~p~~~~~~~ 282 (510)
T 4at0_A 204 LMKPLVETAEKL-GVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAYNDKMIEAHAPRLIGRPG 282 (510)
T ss_dssp HHHHHHHHHHHT-TCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTTCHHHHHHHCGGGTTCBC
T ss_pred HHHHHHHHHHHc-CCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhhCHHHHHHhCccccCCCC
Confidence 334444445443 8999766 79999998 7899999876543 59995 9999999553210000000 011113
Q ss_pred CCCcchHHHHHHHHH-cCCCcccc
Q psy13354 880 FGDFSTTSLAKRLKE-LQLSHGRL 902 (1342)
Q Consensus 880 ~g~~~s~~l~~~l~~-~g~~~~~~ 902 (1342)
.|...++|.+..+.. .|..+..+
T Consensus 283 ~~~~~~tGdGi~ma~~~Ga~~~~m 306 (510)
T 4at0_A 283 AAIEEHDGRSILMAQALGADLAHM 306 (510)
T ss_dssp CSCTTCCCHHHHHHHTTTBCEECT
T ss_pred CCCCCCCHHHHHHHHHhCcCeecc
Confidence 455567788888864 78776543
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.17 Score=52.95 Aligned_cols=128 Identities=13% Similarity=0.068 Sum_probs=69.1
Q ss_pred EEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC-CCCcchhhhccCCCccEEEEccC----CCc---CHHHHHH
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC-GKCSVCVKIDNGCFMDYIEMDAA----STR---GINEMAQ 486 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c-~~~~~~~~~~~~~~~d~~~i~~~----~~~---~~~~i~~ 486 (1342)
.+++|+.+|.||||+|-.++-.....+.... ....... ..+.....+... ..++..+... ... .....+.
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~-~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVG-VVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEE-EEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEE-EEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4788899999999999999887664432110 0000000 000000111111 1222222110 000 0122344
Q ss_pred HHHHHhhcCccCCceEEEeccCc------cCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccE
Q psy13354 487 LLEQTIYAPINARYKIYVIDEVH------MLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRC 550 (1342)
Q Consensus 487 ii~~~~~~p~~~~~rvviIDE~~------~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~ 550 (1342)
.++.+...-..+++.+||+||+. .++. +.+++++.+-|+..-+|++.+... +.|....
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap---~~l~e~A 171 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCH---RDILDLA 171 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCC---HHHHHHC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCc---HHHHHhC
Confidence 44444444445678999999984 3444 468888888888888999988764 4444444
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.14 Score=58.78 Aligned_cols=73 Identities=29% Similarity=0.339 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcccCeeEEec-ccceEEEeC-----------------C--eEEEEEeC--------------CCcEEE
Q psy13354 807 ILYKQAIRFYLENQLNLYLFQE-EVDDLIIKT-----------------N--KILGVVTK--------------IGIKFF 852 (1342)
Q Consensus 807 ~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~-----------------~--~~~gv~~~--------------~g~~~~ 852 (1342)
..+.+.+.+.+..++|++++++ .|++|+.++ + +|.||++. ++.+|.
T Consensus 160 ~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~ 239 (344)
T 3jsk_A 160 ALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTIN 239 (344)
T ss_dssp HHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEE
Confidence 4555666777777899999877 699999887 3 89999873 234799
Q ss_pred cceEEEecccCCCceeEecccccCCCCCCCcc-hHHHHHHHHHcCCC
Q psy13354 853 SKTVILTTGTFLNGKIHIGLKSYSAGRFGDFS-TTSLAKRLKELQLS 898 (1342)
Q Consensus 853 ~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~-s~~l~~~l~~~g~~ 898 (1342)
|+.||+||| +.+. ...+...|.++|..
T Consensus 240 Ak~VV~ATG-------------------~~s~v~~~~~~~l~~~~~~ 267 (344)
T 3jsk_A 240 APVIISTTG-------------------HDGPFGAFSVKRLVSMKQM 267 (344)
T ss_dssp CSEEEECCC-------------------SSSSSSCHHHHHHHHTTSS
T ss_pred cCEEEECCC-------------------CCchhhHHHHHHHhhcCcc
Confidence 999999999 4444 44667777777774
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=93.66 E-value=0.23 Score=50.46 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.|++|+||||+++.+ +.++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 35899999999999999999 7665
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=93.49 E-value=0.084 Score=65.29 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=54.0
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEecccceEEEe-CCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIK-TNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~-~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++||..|.+.+.+.++..|+++++.++|+++..+ ++.+.+|.+.+|+++.||.||+|||
T Consensus 189 ~~~~~~~l~~~L~~~~~~~~Gv~i~~~~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G 249 (550)
T 2e4g_A 189 WHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSG 249 (550)
T ss_dssp EEECHHHHHHHHHHHHHHHSCCEEEECCEEEEEECTTSCEEEEEETTSCEEECSEEEECCG
T ss_pred eEEcHHHHHHHHHHHHHhcCCcEEEECeEeEEEEcCCCCEEEEEECCCCEEECCEEEECCC
Confidence 47899999999999998878999988899999875 4678899999998999999999999
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.12 Score=65.02 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=58.7
Q ss_pred HHHHHHHHcccCe-eEEec-ccceEEEeCC---eEEEEEe---CCCc--EEEcceEEEecccCCCceeEecccccC-C-C
Q psy13354 811 QAIRFYLENQLNL-YLFQE-EVDDLIIKTN---KILGVVT---KIGI--KFFSKTVILTTGTFLNGKIHIGLKSYS-A-G 878 (1342)
Q Consensus 811 ~~~~~~~~~~~~~-~i~~~-~v~~l~~~~~---~~~gv~~---~~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~-~-g 878 (1342)
+.+.+.+++.+|+ +|+.+ .|.+|+.+++ +|.||+. .+|. .+.|+.||+|||-|-+ .+.+ + |
T Consensus 155 ~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~-------~y~~~~~~ 227 (643)
T 1jnr_A 155 PIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATL-------LFRPRSTG 227 (643)
T ss_dssp HHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS-------SSCCSCCS
T ss_pred HHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccc-------cccCcccc
Confidence 3444445545699 89776 7999999887 9999975 5665 5999999999994322 1212 1 1
Q ss_pred -----CCCCcchHHHHHHHHH-cCCCccccc
Q psy13354 879 -----RFGDFSTTSLAKRLKE-LQLSHGRLK 903 (1342)
Q Consensus 879 -----~~g~~~s~~l~~~l~~-~g~~~~~~~ 903 (1342)
..+...++|.+..++. +|..+..+.
T Consensus 228 ~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me 258 (643)
T 1jnr_A 228 EAAGRTWYAIFDTGSGYYMGLKAGAMLTQFE 258 (643)
T ss_dssp GGGGCCSSCTTCBSHHHHHHHHHTCCEESTT
T ss_pred cccccccCCCCCccHHHHHHHHhCCccCCch
Confidence 1234557888888864 888776543
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=93.17 E-value=0.22 Score=52.27 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=22.6
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
...++++||.|+||||.+..+++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45789999999999999888888774
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.17 Score=57.76 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=53.4
Q ss_pred CcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEe---C-C--eEEEEEeC------
Q psy13354 780 DKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIK---T-N--KILGVVTK------ 846 (1342)
Q Consensus 780 d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~---~-~--~~~gv~~~------ 846 (1342)
+..+++|+- .|+..+.. +...|...+.+.+...||++++.+ +|++|+.+ + + +|.||++.
T Consensus 127 ~~~Gv~~~~----~g~~~~~~----~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~ 198 (326)
T 2gjc_A 127 QELEIPYED----EGDYVVVK----HAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQ 198 (326)
T ss_dssp HHTTCCCEE----CSSEEEES----CHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHT
T ss_pred HhhCccccc----CCCeEEEc----chHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecc
Confidence 344555542 25555543 335677777777888899999876 79999998 3 5 89999874
Q ss_pred --------CCcEEEc---------------ceEEEecc
Q psy13354 847 --------IGIKFFS---------------KTVILTTG 861 (1342)
Q Consensus 847 --------~g~~~~~---------------~~vii~tG 861 (1342)
++..+.| +.||.|||
T Consensus 199 ~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG 236 (326)
T 2gjc_A 199 AHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTG 236 (326)
T ss_dssp C---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCC
T ss_pred cccceeccCceEEEEeeccccccccccccCCEEEECcC
Confidence 3357999 99999999
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.24 Score=54.75 Aligned_cols=26 Identities=46% Similarity=0.598 Sum_probs=23.2
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..++|.|+||+||||+++.+++.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999864
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.14 Score=53.51 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=22.6
Q ss_pred CCcEEEEEccCcccHH-HHHHHHHHHhc
Q psy13354 412 LHHAYLFTGTRGVGKT-TISRILAKCLN 438 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT-~la~~iak~L~ 438 (1342)
.+..+++|||.|+||| ++.+++.+...
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~ 46 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI 46 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3567999999999999 88888887765
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.15 Score=70.62 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.9
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..++|+||||+|||++|..++.+..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999988764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=92.35 E-value=0.31 Score=56.30 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.3
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++++||||+|||+++..++..+.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999987764
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.075 Score=54.78 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.7
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..++|+|++|+||||+++.+++.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35689999999999999999999986
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.18 Score=58.80 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=50.1
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++|...|.+.+.+.+++ .+++++.+ +|++|..+++++.||.+.+| .+.||.||+|||
T Consensus 144 ~~~~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G 202 (382)
T 1y56_B 144 GKADPFEATTAFAVKAKE-YGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATN 202 (382)
T ss_dssp CEECHHHHHHHHHHHHHH-TTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCG
T ss_pred eeECHHHHHHHHHHHHHH-CCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcc
Confidence 477888888888887765 58999776 79999988899999999888 799999999999
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=0.28 Score=52.10 Aligned_cols=27 Identities=11% Similarity=-0.054 Sum_probs=22.6
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
...+++||+-|+||||.+...+.....
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~ 54 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF 54 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 357899999999999998888877653
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.27 Score=60.34 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=53.2
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeC-CeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKT-NKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~-~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++||..|.+.+.+.++...+++++.++|+++..++ +.+.+|.+.+|.++.||.||.|+|
T Consensus 170 ~~~~r~~l~~~L~~~a~~~~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG 230 (526)
T 2pyx_A 170 YHLNAAKFSQLLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTG 230 (526)
T ss_dssp EEECHHHHHHHHHHHHHHTSCCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECSG
T ss_pred EEEcHHHHHHHHHHHHHhcCCCEEEEeEEEEEEecCCCcEEEEEECCCCEEEcCEEEECCC
Confidence 588999999999999887679999888999998764 567899999988899999999999
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=91.82 E-value=0.4 Score=52.71 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.9
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.+++.||+|+||||+++.+++.++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 5799999999999999999999874
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=91.81 E-value=0.95 Score=48.04 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.9
Q ss_pred EEEEccCcccHHHHHHHHHHHhcc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++|+|++|+||||+++.+++.++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999998863
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=0.67 Score=49.16 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=20.7
Q ss_pred cEEEEEccCcccHHHHHHHHHH
Q psy13354 414 HAYLFTGTRGVGKTTISRILAK 435 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak 435 (1342)
..++++||+|+|||+++..++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999997
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=0.15 Score=60.70 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=23.8
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+..++++|++|+||||+++.+++.++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356799999999999999999998775
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=2.1 Score=52.13 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=49.6
Q ss_pred ceEEEeccCccC----CHHHHHHHHHhhcCC-CCcEEEEEEeCCCC--CChHHHhccE-EEEEEcCCCHHHHHHHH
Q psy13354 500 YKIYVIDEVHML----THHAFNAMLKTLEEP-PKYIKFILATTEPQ--KIPITVLSRC-IQFNLKKMLHHDIVNNL 567 (1342)
Q Consensus 500 ~rvviIDE~~~L----~~~~~~~Ll~~Le~p-~~~~vlIl~t~~~~--kl~~~L~sR~-~~i~~~~l~~~el~~~l 567 (1342)
+-+|+|||++.+ .++..+.|.++.... .-.+.+|++|.++. .+...+++.+ ..+.|..-+..+...++
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 348999999966 344445555555443 45788899998887 6778899888 77888888888877665
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=91.69 E-value=0.49 Score=52.87 Aligned_cols=56 Identities=32% Similarity=0.425 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeC---------CC-----cEEEcceEEEecc
Q psy13354 806 RILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTK---------IG-----IKFFSKTVILTTG 861 (1342)
Q Consensus 806 ~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~---------~g-----~~~~~~~vii~tG 861 (1342)
...+...+.+.+...++++++.+ +|++|..+++++.||.+. +| ..+.||.||+|||
T Consensus 118 ~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG 188 (284)
T 1rp0_A 118 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCG 188 (284)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCC
Confidence 34444455555666689999776 799999999999999874 32 5799999999999
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=91.48 E-value=0.41 Score=56.72 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=24.4
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+..+++.|++|+||||++..++..+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999998864
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.24 Score=60.42 Aligned_cols=59 Identities=17% Similarity=0.053 Sum_probs=51.9
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEecccceEEEe-CCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIK-TNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~-~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++||..|.+.+.+.++. .+++++.++|+++..+ ++.+.+|.+.+|+++.||.||.|+|
T Consensus 168 ~~~~~~~l~~~L~~~a~~-~gv~~~~~~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G 227 (511)
T 2weu_A 168 YHFDADEVARYLSEYAIA-RGVRHVVDDVQHVGQDERGWISGVHTKQHGEISGDLFVDCTG 227 (511)
T ss_dssp EEECHHHHHHHHHHHHHH-TTCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECCG
T ss_pred EEEcHHHHHHHHHHHHHH-CCCEEEECeEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCC
Confidence 478999999999888876 7899988899999874 5678899999998999999999999
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.36 E-value=0.79 Score=54.32 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=24.7
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+..+++.|++|+||||++..++..+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999998864
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.25 E-value=0.12 Score=53.58 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.1
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
...++|+|++|+||||+++.+++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999999863
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=91.06 E-value=0.34 Score=58.51 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcccCeeEEecc-cceEEEeCCeEEEEEeC-CCcEEEcceEEEecccCCCceeEecccccCCCCCCCcch
Q psy13354 808 LYKQAIRFYLENQLNLYLFQEE-VDDLIIKTNKILGVVTK-IGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFST 885 (1342)
Q Consensus 808 ~y~~~~~~~~~~~~~~~i~~~~-v~~l~~~~~~~~gv~~~-~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s 885 (1342)
.+.+.+.+.+ ..+|++++.+. | +|+.++++|.||.+. .+..+.|+.||+||| |.+....-.++....
T Consensus 120 ~l~~~L~~~~-~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtG---------g~~~~~~~~~~~~~~ 188 (472)
T 2e5v_A 120 EIFNFLLKLA-REEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATG---------GYSYLYEYSSTQSTN 188 (472)
T ss_dssp HHHHHHHHHH-HHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCC---------CCGGGSSSBSSCTTC
T ss_pred HHHHHHHHHH-HhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCC---------CCcccCccccCCCCC
Confidence 3344444444 35799998875 9 999999999999764 233588999999999 444332222233344
Q ss_pred HHHHHHHH-HcCCCcc
Q psy13354 886 TSLAKRLK-ELQLSHG 900 (1342)
Q Consensus 886 ~~l~~~l~-~~g~~~~ 900 (1342)
++.+..+. +.|..+.
T Consensus 189 tGdgi~~a~~aGa~~~ 204 (472)
T 2e5v_A 189 IGDGMAIAFKAGTILA 204 (472)
T ss_dssp SCHHHHHHHHTTCCEE
T ss_pred chHHHHHHHHcCCCEe
Confidence 55555543 4666543
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.12 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.8
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.++|.|++|+||||+++.+++.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5799999999999999999999863
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=90.92 E-value=0.1 Score=57.47 Aligned_cols=28 Identities=43% Similarity=0.541 Sum_probs=24.8
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+..++|.|++|+||||+++.+++.+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4456799999999999999999999875
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=1.2 Score=49.96 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=23.6
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..+.|.|+.|+||||++..++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999998875
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=90.72 E-value=0.51 Score=54.59 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.5
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++++|+||+|||+++..++..+.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999988764
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=90.63 E-value=0.52 Score=50.39 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.3
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+.|.||+|+||||+++.++..+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999998654
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.49 E-value=0.29 Score=57.58 Aligned_cols=60 Identities=8% Similarity=0.101 Sum_probs=52.4
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEE-EEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKIL-GVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~-gv~~~~g~~~~~~~vii~tG 861 (1342)
..++|..+.+.+.+.+++.|+++|+.+ +|+++..+++.+. .|.+.+|+++.||.||.|+|
T Consensus 102 ~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG 163 (399)
T 2x3n_A 102 ILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADG 163 (399)
T ss_dssp EECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCC
T ss_pred ccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCC
Confidence 468899999999999988889999765 7999988877775 68888999999999999999
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.45 E-value=0.58 Score=53.99 Aligned_cols=38 Identities=16% Similarity=0.009 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCC--CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 401 KSLINALDKKRL--HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 401 ~~L~~~l~~~~~--~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..|-..+..|.+ ...++|+||||+|||+++..++..+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444442332 35789999999999999999998864
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.42 E-value=1 Score=48.64 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHH
Q psy13354 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434 (1342)
Q Consensus 401 ~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~ia 434 (1342)
+.+...+..| ..+++.||.|+|||++...+.
T Consensus 67 ~~~i~~i~~g---~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 67 SEILEAISQN---SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHHC---SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHhcC---CEEEEEeCCCCCcHHhHHHHH
Confidence 3444455555 468999999999998665554
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=90.29 E-value=0.35 Score=58.02 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=50.2
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeC---CCc--EEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTK---IGI--KFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~---~g~--~~~~~~vii~tG 861 (1342)
.+++|..+.+.+.+.+.+ .+++|+.+ +|+++..+++.+.||.+. +|+ ++.||.||.|+|
T Consensus 95 ~~i~r~~l~~~L~~~a~~-~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG 159 (453)
T 3atr_A 95 FELNAPLYNQRVLKEAQD-RGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATG 159 (453)
T ss_dssp EEECHHHHHHHHHHHHHH-TTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCG
T ss_pred EEEcHHHHHHHHHHHHHH-cCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcC
Confidence 467888888888887776 78999776 799999999999998875 676 799999999999
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=90.18 E-value=0.47 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.8
Q ss_pred cEEEEEccCcccHHHHHHHHHHHh
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L 437 (1342)
..++|.|+||+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999999864
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=90.16 E-value=0.54 Score=53.15 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=24.1
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+..++|.|++|+||||++..++..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 457999999999999999999998863
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=90.13 E-value=0.64 Score=49.87 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=26.2
Q ss_pred CCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC
Q psy13354 498 ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE 538 (1342)
Q Consensus 498 ~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~ 538 (1342)
.+..+|+|||++++.. ...+.+.+.+. .+.+|++.-+
T Consensus 89 ~~~dvViIDEaQF~~~--v~el~~~l~~~--gi~VI~~GL~ 125 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD--IVEFCEAMANA--GKTVIVAALD 125 (234)
T ss_dssp TTCSEEEESSGGGCTT--HHHHHHHHHHT--TCEEEEECCS
T ss_pred ccCCEEEEEchhhhhh--HHHHHHHHHhC--CCEEEEEecc
Confidence 3467999999999974 66777887763 4455666433
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=90.13 E-value=0.19 Score=56.73 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=34.4
Q ss_pred cccccCcCCeeecccccCchh--HHHHHHHHHHHHHHHHHHhCC
Q psy13354 1062 SLETKQIHGLFFAGQINGTTG--YEEAASQGLLAGLNAALFSQD 1103 (1342)
Q Consensus 1062 tlesk~~~gL~~aGqi~g~~g--y~eA~~~G~~Ag~na~~~~~~ 1103 (1342)
.|+| .+||+|.|||+.+..+ ...|++||.+|++||.++++.
T Consensus 271 ~~~T-s~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~yL~~ 313 (314)
T 4a5l_A 271 GPKT-SVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCEKWLQT 313 (314)
T ss_dssp TTBC-SSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcc-CCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788 7999999999987544 346999999999999988753
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=90.11 E-value=0.18 Score=52.55 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=23.7
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..++|.|++|+||||+++.+++.++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999999886
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=90.06 E-value=1.2 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=22.3
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|+|+||+|||+++..++..+.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHH
Confidence 5789999999999999999988764
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=89.95 E-value=0.17 Score=52.48 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=23.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|+|++|+||||+++.+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999986
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=89.90 E-value=0.17 Score=52.32 Aligned_cols=25 Identities=48% Similarity=0.595 Sum_probs=23.0
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|+|++|+||||+++.+++.++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999986
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=89.86 E-value=0.18 Score=57.91 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 401 ~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+.+...+..|+.+ .++|.|++|+||||+++.+++.+..
T Consensus 13 ~~l~~~i~~g~~~-~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 13 QLLDNRIEDNYRV-CVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHTTTTCSCE-EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCee-EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3344444566654 4789999999999999999999874
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=89.84 E-value=0.17 Score=51.70 Aligned_cols=25 Identities=44% Similarity=0.662 Sum_probs=22.8
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+.|+|++|+||||+++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999876
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=89.82 E-value=0.18 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.1
Q ss_pred CcEEEEEccCcccHHHHHHHHHH
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAK 435 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak 435 (1342)
+..++|.|+||+||||+++.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35689999999999999999998
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=89.78 E-value=0.15 Score=57.35 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=24.0
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+..++|.||+|+||||+++.+++.+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999999873
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=89.77 E-value=0.16 Score=52.54 Aligned_cols=26 Identities=42% Similarity=0.579 Sum_probs=23.4
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+.++|+|++|+||||+++.+++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999999999873
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=89.75 E-value=0.22 Score=52.46 Aligned_cols=29 Identities=34% Similarity=0.363 Sum_probs=25.0
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..+..++|+|++|+||||+++.+++.++.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34457999999999999999999998863
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=89.71 E-value=0.38 Score=59.13 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=52.4
Q ss_pred hhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEe-CCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 801 RAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIK-TNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 801 r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~-~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
..++||..+.+.+.+.+++ .+++++.++|+++..+ ++.+.+|.+.+|+++.||.||+|+|
T Consensus 159 ~~~i~~~~l~~~L~~~a~~-~gv~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G 219 (538)
T 2aqj_A 159 AWHFDAHLVADFLKRWAVE-RGVNRVVDEVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSG 219 (538)
T ss_dssp EEEECHHHHHHHHHHHHHH-TTCEEEECCEEEEEECTTSCEEEEEETTSCEECCSEEEECCG
T ss_pred cEEEeHHHHHHHHHHHHHH-CCCEEEEeeEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCC
Confidence 3578999999999998876 6899988899999875 4568899999998999999999999
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=89.71 E-value=0.18 Score=51.91 Aligned_cols=24 Identities=46% Similarity=0.690 Sum_probs=22.4
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.++|.|++|+||||+++.+++.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999986
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=89.67 E-value=0.42 Score=58.41 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=51.1
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeC--CCc--EEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTK--IGI--KFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~--~g~--~~~~~~vii~tG 861 (1342)
.++||..|.+.+.+.+++ +|++|+.+ +|+++..+++++.||.+. +|+ ++.||.||.|||
T Consensus 106 ~~v~r~~l~~~L~~~a~~-~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG 169 (512)
T 3e1t_A 106 YQVERARFDDMLLRNSER-KGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASG 169 (512)
T ss_dssp EBCCHHHHHHHHHHHHHH-TTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCC
T ss_pred eEecHHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCC
Confidence 378999999998888876 78999877 799999999999998764 474 799999999999
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=0.19 Score=51.15 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=23.2
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.++|+|++|+||||+++.+++.++.
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999999873
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=89.56 E-value=0.52 Score=58.67 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=34.6
Q ss_pred ccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 394 IGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 394 vGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..|..++..+.+.+.+++ ..+++.++.|+|||.++-.++..+..
T Consensus 181 ~~Q~~ai~~~~~~~~~~~--~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 181 YYQQIAINRAVQSVLQGK--KRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp HHHHHHHHHHHHHHHTTC--SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC--CceEEEecCCCChHHHHHHHHHHHHh
Confidence 347888888888887765 34689999999999998888877653
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.52 E-value=0.21 Score=52.67 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=23.6
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..++|.|++|+||||+++.+++.++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999863
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=89.48 E-value=0.34 Score=56.38 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++|...|.+.+.+.+++ .+++++.+ +|++|..+++.+ +|.+.+| .+.||.||+|||
T Consensus 159 ~~~~~~~~~~~l~~~~~~-~g~~i~~~~~v~~i~~~~~~~-~v~~~~g-~~~a~~vV~A~G 216 (382)
T 1ryi_A 159 VHVEPYFVCKAYVKAAKM-LGAEIFEHTPVLHVERDGEAL-FIKTPSG-DVWANHVVVASG 216 (382)
T ss_dssp CBCCHHHHHHHHHHHHHH-TTCEEETTCCCCEEECSSSSE-EEEETTE-EEEEEEEEECCG
T ss_pred eEEcHHHHHHHHHHHHHH-CCCEEEcCCcEEEEEEECCEE-EEEcCCc-eEEcCEEEECCC
Confidence 467888888888887775 47999776 799998888877 8989877 799999999999
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=89.46 E-value=0.34 Score=52.89 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=24.8
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+..++|+|++|+||||+++.+++.++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999999886
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=0.24 Score=51.48 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=24.2
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+..++|+|++|+||||+++.+++.++
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999999886
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=89.36 E-value=0.21 Score=51.93 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=23.5
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..++|.|++|+||||+++.+++.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999999886
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=89.35 E-value=0.19 Score=52.30 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.6
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.++|.|++|+||||+++.+++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999987
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=89.34 E-value=0.41 Score=56.15 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=49.2
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++|-..|.+.+.+.+++ .+++++.+ +|++|..+++++.+|.+.+| .+.||.||+|||
T Consensus 169 ~~~~~~~~~~~l~~~~~~-~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G 227 (405)
T 2gag_B 169 GIAKHDHVAWAFARKANE-MGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGA 227 (405)
T ss_dssp BBCCHHHHHHHHHHHHHH-TTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCG
T ss_pred ccCCHHHHHHHHHHHHHH-CCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCc
Confidence 467777788878777765 58999774 79999988888999999888 699999999999
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=89.28 E-value=0.46 Score=55.10 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++|...|-+.+.+.+++. +++|+.+ +|++|..+++. .+|.|.+| .+.||.||+|||
T Consensus 149 ~~~~~~~~~~~l~~~a~~~-Gv~i~~~~~V~~i~~~~~~-~~V~t~~g-~i~a~~VV~A~G 206 (381)
T 3nyc_A 149 ADIDTDALHQGYLRGIRRN-QGQVLCNHEALEIRRVDGA-WEVRCDAG-SYRAAVLVNAAG 206 (381)
T ss_dssp EEECHHHHHHHHHHHHHHT-TCEEESSCCCCEEEEETTE-EEEECSSE-EEEESEEEECCG
T ss_pred ceECHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEEeCCe-EEEEeCCC-EEEcCEEEECCC
Confidence 3577778888888877754 7999765 89999988887 68999888 799999999999
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=89.13 E-value=1.6 Score=50.51 Aligned_cols=47 Identities=26% Similarity=0.229 Sum_probs=32.3
Q ss_pred CCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 387 PSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+.+++++.-.+ ++. +.+... ...+++.||.|+||||+.+.++..+..
T Consensus 103 ~~~l~~lg~~~-~l~---~l~~~~--~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 103 VLTMEELGMGE-VFK---RVSDVP--RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp CCCTTTTTCCH-HHH---HHHHCS--SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHcCChH-HHH---HHHhCC--CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 45677764432 333 333322 236899999999999999999998863
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=88.90 E-value=0.26 Score=52.83 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=24.7
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.+..++|.||||+||+|.|+.+++.++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3467899999999999999999999873
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.82 E-value=0.24 Score=51.32 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=22.9
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|+|++|+||||+++.+++.++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999886
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.80 E-value=0.25 Score=52.11 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=23.6
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..++|.|++|+||||+++.+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999986
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=88.70 E-value=0.71 Score=51.31 Aligned_cols=58 Identities=16% Similarity=0.005 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 803 QVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 803 q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
..+...+..++.+.+...+++++++++|+++..+++. .-|.+.+|..+.+|.||+|||
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vviAtG 109 (297)
T 3fbs_A 52 GKAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFGE-FIVEIDGGRRETAGRLILAMG 109 (297)
T ss_dssp TCCHHHHHHHHHHHHTTCTTEEEEESCEEEEEEETTE-EEEEETTSCEEEEEEEEECCC
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEeEEEEEEEcCCe-EEEEECCCCEEEcCEEEECCC
Confidence 4566778888889998889999999999999877765 457888999999999999999
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.66 E-value=0.24 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=23.3
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.|++|+||||+++.+++.++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999986
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=88.63 E-value=3 Score=50.37 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=45.2
Q ss_pred EEEeccCccCCH----HHHHHHHHhhcCC-CCcEEEEEEeCCCC--CChHHHhccE-EEEEEcCCCHHHHHHHHH
Q psy13354 502 IYVIDEVHMLTH----HAFNAMLKTLEEP-PKYIKFILATTEPQ--KIPITVLSRC-IQFNLKKMLHHDIVNNLC 568 (1342)
Q Consensus 502 vviIDE~~~L~~----~~~~~Ll~~Le~p-~~~~vlIl~t~~~~--kl~~~L~sR~-~~i~~~~l~~~el~~~l~ 568 (1342)
+|+|||++.+-. +..+.|.++.... .-.+.+|++|.++. .+...+++.+ ..+.|.-.+..+...++.
T Consensus 300 vlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 300 VVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred EEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 888999975532 2223333333332 23677889998887 4667788877 788898888888877653
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=88.59 E-value=0.18 Score=52.04 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=19.6
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..++|+|++|+||||+++.+++.++.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46899999999999999999998863
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=0.24 Score=52.15 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.9
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+..+.|.|++|+||||+++.++..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999985
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=88.53 E-value=0.25 Score=51.49 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=23.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.|++|+||||+++.+++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999886
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=88.50 E-value=0.24 Score=50.53 Aligned_cols=24 Identities=42% Similarity=0.714 Sum_probs=22.5
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.++|+|++|+||||+++.+++.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999986
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=88.35 E-value=0.29 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=23.5
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..++|.|++|+||||+++.+++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999999863
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=88.35 E-value=0.27 Score=51.95 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.7
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..++|.|++|+||||+++.+++.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 46899999999999999999999874
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=88.13 E-value=1.4 Score=49.53 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=27.8
Q ss_pred HHHHHHHH----cCCCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 401 KSLINALD----KKRLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 401 ~~L~~~l~----~~~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..|-..+. .|-.+..++++||||+|||+++..++....
T Consensus 12 ~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp HHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34555565 454445689999999999999888776654
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=88.03 E-value=0.28 Score=67.26 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.8
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+|+|||||||||++|+.++.+-.
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~ 1107 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQ 1107 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHhh
Confidence 499999999999999999998764
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.00 E-value=0.97 Score=47.62 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.7
Q ss_pred EEEEEccCcccHHHHHHHHHHHh
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L 437 (1342)
.+++.+|+|+|||.++-.++..+
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47999999999999988877654
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=87.91 E-value=0.3 Score=50.73 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=22.5
Q ss_pred cEEEEEccCcccHHHHHHHHHHH-hc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKC-LN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~-L~ 438 (1342)
..++|+|++|+||||+++.+++. ++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46899999999999999999998 44
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=87.85 E-value=0.71 Score=54.57 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.4
Q ss_pred ceEEEeccCccCCHHHHHHHHHhh
Q psy13354 500 YKIYVIDEVHMLTHHAFNAMLKTL 523 (1342)
Q Consensus 500 ~rvviIDE~~~L~~~~~~~Ll~~L 523 (1342)
..+|||||+.++.......++..+
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~ 258 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMS 258 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhC
Confidence 579999999999988888777765
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=87.78 E-value=0.53 Score=56.23 Aligned_cols=58 Identities=9% Similarity=0.051 Sum_probs=47.7
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEe-cccceEEE---------------eCCeEEEEEeCCCcEE--EcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQ-EEVDDLII---------------KTNKILGVVTKIGIKF--FSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~-~~v~~l~~---------------~~~~~~gv~~~~g~~~--~~~~vii~tG 861 (1342)
.++|...+.+.+.+.+++ .+++++. .+|++|.. +++++.+|.+.+| .+ .||.||+|||
T Consensus 176 ~~~~~~~l~~~L~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG 251 (448)
T 3axb_A 176 GFLDAEKVVDYYYRRASG-AGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAG 251 (448)
T ss_dssp EECCHHHHHHHHHHHHHH-TTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCG
T ss_pred eEEcHHHHHHHHHHHHHh-CCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCC
Confidence 356777788777777765 4799977 48999988 6778889999888 57 9999999999
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=87.55 E-value=0.29 Score=52.09 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=22.0
Q ss_pred EEEEccCcccHHHHHHHHHHHhcc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++|+|++|+||||+++.+++.++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999998863
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.54 E-value=0.32 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=22.3
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.++|+|++|+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999886
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=87.46 E-value=0.35 Score=50.91 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.4
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..+.|.|++|+||||+++.++..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45789999999999999999999875
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=87.32 E-value=0.31 Score=51.57 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=24.4
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+..++|+|++|+||||+++.+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999874
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=87.25 E-value=0.29 Score=52.42 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=23.5
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..++|.|++|+||||+++.+++.++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35899999999999999999999873
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=87.23 E-value=0.59 Score=53.81 Aligned_cols=58 Identities=12% Similarity=-0.037 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCC--cEEEcceEEEecc
Q psy13354 803 QVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIG--IKFFSKTVILTTG 861 (1342)
Q Consensus 803 q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g--~~~~~~~vii~tG 861 (1342)
++|...+.+.+.+.+++ .+++++.+ +|++|..+++.+.+|.+.+| ..+.||.||+|||
T Consensus 146 ~~~~~~~~~~l~~~~~~-~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G 206 (369)
T 3dme_A 146 IVDSHALMLAYQGDAES-DGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAG 206 (369)
T ss_dssp EECHHHHHHHHHHHHHH-TTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCG
T ss_pred EECHHHHHHHHHHHHHH-CCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCC
Confidence 57777777777777765 47999754 89999988766456899888 4799999999999
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=87.17 E-value=0.41 Score=48.97 Aligned_cols=26 Identities=35% Similarity=0.705 Sum_probs=23.2
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
...++|.|++|+||||+++.++..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 35689999999999999999998875
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=87.16 E-value=25 Score=40.23 Aligned_cols=28 Identities=36% Similarity=0.336 Sum_probs=24.3
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.-...+.|+|++|+||||++..++..+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998875
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=87.15 E-value=0.32 Score=52.35 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=23.1
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.|++|+||||+++.+++.++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999886
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=87.12 E-value=0.5 Score=58.70 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=51.9
Q ss_pred hhhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeC-CC--cEEEcceEEEecc
Q psy13354 801 RAQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTK-IG--IKFFSKTVILTTG 861 (1342)
Q Consensus 801 r~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~-~g--~~~~~~~vii~tG 861 (1342)
-.++||..|.+.+.+.++. .|++++.+ +|+++..+++.+.+|.+. +| ..+.||.||.|||
T Consensus 122 ~~~v~r~~l~~~L~~~a~~-~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG 185 (591)
T 3i3l_A 122 AVQVKREEFDKLLLDEARS-RGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGG 185 (591)
T ss_dssp EEECCHHHHHHHHHHHHHH-TTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCG
T ss_pred eEEEcHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCC
Confidence 3478999999998888876 79999877 899998887888899987 66 5799999999999
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=87.10 E-value=0.35 Score=51.40 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.5
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.++|.||||+||+|.|+.+++.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3788999999999999999999873
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=87.00 E-value=0.34 Score=50.94 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=23.0
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|+|++|+||||+++.+++.++
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999876
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=86.94 E-value=0.36 Score=50.64 Aligned_cols=24 Identities=42% Similarity=0.497 Sum_probs=22.4
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+.|.|++|+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999999986
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=86.93 E-value=0.4 Score=51.83 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=23.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.|++|+||||+++.+++.++
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999986
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=86.61 E-value=0.4 Score=50.81 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.2
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+..++|+|++|+||||+++.+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999864
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=86.31 E-value=0.91 Score=57.45 Aligned_cols=57 Identities=9% Similarity=0.040 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 803 QVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 803 q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
++|...|-+.+.+.++. .+++|+.+ +|++|..+++.+ +|.+.+|..+.|+.||+|||
T Consensus 413 ~v~p~~l~~aL~~~a~~-~Gv~i~~~t~V~~l~~~~~~v-~V~t~~G~~i~Ad~VVlAtG 470 (676)
T 3ps9_A 413 WLCPAELTRNVLELAQQ-QGLQIYYQYQLQNFSRKDDCW-LLNFAGDQQATHSVVVLANG 470 (676)
T ss_dssp EECHHHHHHHHHHHHHH-TTCEEEESCCEEEEEEETTEE-EEEETTSCEEEESEEEECCG
T ss_pred eeCHHHHHHHHHHHHHh-CCCEEEeCCeeeEEEEeCCeE-EEEECCCCEEECCEEEECCC
Confidence 45556666666666665 47999666 899999998886 89998988999999999999
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=86.31 E-value=0.34 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.4
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.||+|+||||+++.+++.+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4589999999999999999999873
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=86.16 E-value=0.5 Score=48.99 Aligned_cols=27 Identities=41% Similarity=0.418 Sum_probs=24.2
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+..++|.|++|+||||+++.+++.+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999863
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=86.14 E-value=0.51 Score=50.01 Aligned_cols=40 Identities=28% Similarity=0.464 Sum_probs=29.2
Q ss_pred hHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 399 ISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 399 ~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+++.|.+.+.. ...+..+.|.||+|+||||+++.++..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33444444432 23445789999999999999999999886
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=86.13 E-value=0.36 Score=50.19 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.5
Q ss_pred cEEEEEccCcccHHHHHHHHHHHh
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L 437 (1342)
..+.|.||+|+||||+++.++..+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999998753
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=85.94 E-value=0.97 Score=50.80 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcccCeeEEecccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 806 RILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 806 ~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
...+.+.+.+.+...+++.+....|..+...+...+-|.+.+|.++.+|+||||||
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATG 114 (304)
T 4fk1_A 59 PEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATG 114 (304)
T ss_dssp HHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccC
Confidence 34555666777788899999999888887666555568899999999999999999
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=85.94 E-value=0.39 Score=51.35 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.9
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.++|.|++|+||||+++.+++.++.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCc
Confidence 5899999999999999999999863
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=85.91 E-value=1.3 Score=52.09 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 809 YKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 809 y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
+.+.+++.++ ..+++++.+ +|+++.-+++++.+|.+.+|+++.||.||+|||
T Consensus 186 ~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G 238 (404)
T 3fg2_P 186 ISSYFHDRHS-GAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVG 238 (404)
T ss_dssp HHHHHHHHHH-HTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCC
T ss_pred HHHHHHHHHH-hCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcC
Confidence 3445555554 378999766 799998888999999999999999999999999
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=85.85 E-value=0.58 Score=49.65 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=22.2
Q ss_pred CCceEEEeccCccCCHHHHHHHHHhhc
Q psy13354 498 ARYKIYVIDEVHMLTHHAFNAMLKTLE 524 (1342)
Q Consensus 498 ~~~rvviIDE~~~L~~~~~~~Ll~~Le 524 (1342)
.+..+|+|||+++|+.+..+.|.++.+
T Consensus 100 ~~~dvV~IDEaQFf~~~~v~~l~~la~ 126 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLSA 126 (219)
T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHHH
T ss_pred cCCCEEEEechhcCCHHHHHHHHHHHH
Confidence 456799999999999888888877764
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=85.85 E-value=1.6 Score=51.43 Aligned_cols=52 Identities=17% Similarity=0.099 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 809 YKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 809 y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
+.+.+++.+++ .+++++.+ .|+++.-+++++.+|.+.+|+++.||.||+|||
T Consensus 196 ~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G 248 (415)
T 3lxd_A 196 LSEFYQAEHRA-HGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIG 248 (415)
T ss_dssp HHHHHHHHHHH-TTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSC
T ss_pred HHHHHHHHHHh-CCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCC
Confidence 34455555543 68999755 799998878899999999999999999999999
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=85.81 E-value=0.58 Score=52.81 Aligned_cols=43 Identities=26% Similarity=0.432 Sum_probs=34.4
Q ss_pred cccccccCcCCeeecccccCch--hHHHHHHHHHHHHHHHHHHhCC
Q psy13354 1060 KSSLETKQIHGLFFAGQINGTT--GYEEAASQGLLAGLNAALFSQD 1103 (1342)
Q Consensus 1060 ~~tlesk~~~gL~~aGqi~g~~--gy~eA~~~G~~Ag~na~~~~~~ 1103 (1342)
+.+|+| .+||+|.|||+.+.. =-..|..||.+|+.|+++++.+
T Consensus 263 d~~~~T-s~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~~ 307 (312)
T 4gcm_A 263 KDDMTT-SVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEH 307 (312)
T ss_dssp CTTSBC-SSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcc-CCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 347888 899999999998632 2346999999999999988753
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=85.70 E-value=0.4 Score=51.01 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=21.8
Q ss_pred EEEEccCcccHHHHHHHHHHHhc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
++|.|++|+||||+++.+++.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999886
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=85.70 E-value=0.45 Score=49.39 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=22.0
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+.|+|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=85.65 E-value=0.47 Score=51.76 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=24.1
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+..+.|.||+|+||||+++.+++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999998863
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=85.53 E-value=0.43 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.1
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.++|.|++|+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999886
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=85.52 E-value=0.99 Score=58.63 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=49.3
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++|...|-..+.+.+++ .+++|+.+ +|++|..+++++.+|.|.+| .+.||.||+|||
T Consensus 146 g~v~p~~l~~~L~~~a~~-~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG 204 (830)
T 1pj5_A 146 GLASAARAVQLLIKRTES-AGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAG 204 (830)
T ss_dssp EEECHHHHHHHHHHHHHH-TTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCG
T ss_pred ceEcHHHHHHHHHHHHHH-cCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCc
Confidence 367887888888777765 47999755 89999999999999999888 799999999999
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=85.34 E-value=0.53 Score=48.42 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=23.2
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..+.|+|++|+||||+++.++..+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999999999873
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=85.24 E-value=0.87 Score=54.70 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=39.5
Q ss_pred HHHHHHHHcccCeeEEec-ccceEEE-eCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 811 QAIRFYLENQLNLYLFQE-EVDDLII-KTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 811 ~~~~~~~~~~~~~~i~~~-~v~~l~~-~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
+.+.+.++.. |++|+.+ +|++|.+ ++|++.||++.+|+++.||.||.++|
T Consensus 260 ~aL~r~~~~~-Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~ 311 (475)
T 3p1w_A 260 EGFSRMCAIN-GGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPS 311 (475)
T ss_dssp HHHHHHHHHC---CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGG
T ss_pred HHHHHHHHHc-CCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCC
Confidence 4445555544 6777554 7999999 78999999999999999999999999
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=85.04 E-value=0.77 Score=48.70 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=24.2
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+..++|.|++|+||||+++.+++.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346789999999999999999999886
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=85.03 E-value=1.2 Score=52.59 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=49.9
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCe-EEEEEeCCCc--EEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNK-ILGVVTKIGI--KFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~-~~gv~~~~g~--~~~~~~vii~tG 861 (1342)
.++||..|.+.+.+.+++. +++|+.+ +|+++..+++. +..|.+.+|+ ++.||.||+|||
T Consensus 101 ~~~~r~~~~~~L~~~a~~~-gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G 163 (421)
T 3nix_A 101 WQVPRGNFDKTLADEAARQ-GVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASG 163 (421)
T ss_dssp EECCHHHHHHHHHHHHHHH-TCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCG
T ss_pred eEECHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCC
Confidence 4788999988888888765 8999877 79999988654 4677888998 799999999999
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=84.99 E-value=1.8 Score=51.29 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=22.7
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.|++|+||||++..++..+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998874
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=84.92 E-value=0.96 Score=47.57 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHcC--CCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 398 HISKSLINALDKK--RLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 398 ~~~~~L~~~l~~~--~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++.|.+.+... ..+..+.+.|++|+||||+++.++..+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445555555432 3345789999999999999999999874
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=84.85 E-value=3.8 Score=45.34 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=18.6
Q ss_pred EEEEccCcccHHHHHHHHHHHh
Q psy13354 416 YLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L 437 (1342)
.++.+|.|+|||.++-.++...
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 131 RILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp EEECCCTTSCHHHHHHHHHHHH
T ss_pred eEEEcCCCCCcHHHHHHHHHHH
Confidence 4779999999999998777654
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=84.71 E-value=1.3 Score=51.70 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=46.4
Q ss_pred ccccchh-hhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 796 AVRATRA-QVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 796 a~~~~r~-q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
++|.+.. ++|...+-+.+.+.+.. .+++|+.+ +|++|..+++.+. |.+.+| .+.|+.||+|||
T Consensus 141 ~~~~~~~g~~~~~~~~~~l~~~a~~-~Gv~i~~~~~V~~i~~~~~~v~-v~t~~g-~i~a~~VV~A~G 205 (397)
T 2oln_A 141 GFLQPDGGTIDVRGTLAALFTLAQA-AGATLRAGETVTELVPDADGVS-VTTDRG-TYRAGKVVLACG 205 (397)
T ss_dssp EEEETTCEEEEHHHHHHHHHHHHHH-TTCEEEESCCEEEEEEETTEEE-EEESSC-EEEEEEEEECCG
T ss_pred EEEcCCCCEEcHHHHHHHHHHHHHH-cCCEEECCCEEEEEEEcCCeEE-EEECCC-EEEcCEEEEcCC
Confidence 3444433 66776676666666654 47999765 7999998887764 777665 799999999999
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=84.67 E-value=1.4 Score=50.13 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.4
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHh
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L 437 (1342)
...++|+|+||+|||+++..++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3579999999999999999999875
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=84.59 E-value=0.86 Score=56.09 Aligned_cols=45 Identities=27% Similarity=0.297 Sum_probs=37.7
Q ss_pred HHcccCeeEEec-ccceEEEeCCeEEEEEeCC---Cc--EE---EcceEEEecc
Q psy13354 817 LENQLNLYLFQE-EVDDLIIKTNKILGVVTKI---GI--KF---FSKTVILTTG 861 (1342)
Q Consensus 817 ~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~---g~--~~---~~~~vii~tG 861 (1342)
+.+.+|++|+.+ .|++|+.+++++.||.+.+ |+ ++ .++.||||+|
T Consensus 205 ~~~~~~~~i~~~~~V~~i~~~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG 258 (546)
T 1kdg_A 205 ALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAG 258 (546)
T ss_dssp HHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSH
T ss_pred HhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCC
Confidence 345689999776 7999999999999999876 64 34 8999999999
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=84.54 E-value=0.54 Score=48.54 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+.|.||+|+||||+++.++..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999998753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1342 | ||||
| d1kl1a_ | 405 | c.67.1.4 (A:) Serine hydroxymethyltransferase {Bac | 1e-154 | |
| d1dfoa_ | 416 | c.67.1.4 (A:) Serine hydroxymethyltransferase {Esc | 1e-152 | |
| d1rv3a_ | 470 | c.67.1.4 (A:) Serine hydroxymethyltransferase {Rab | 1e-141 | |
| d2a7va1 | 463 | c.67.1.4 (A:26-488) Serine hydroxymethyltransferas | 1e-133 | |
| d1njfa_ | 239 | c.37.1.20 (A:) delta prime subunit of DNA polymera | 3e-68 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 2e-44 | |
| d1c4ka2 | 462 | c.67.1.5 (A:108-569) Ornithine decarboxylase major | 6e-41 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 4e-38 | |
| d1sxje2 | 252 | c.37.1.20 (E:4-255) Replication factor C5 {Baker's | 1e-36 | |
| d1iqpa2 | 231 | c.37.1.20 (A:2-232) Replication factor C {Archaeon | 1e-35 | |
| d1sxjd2 | 237 | c.37.1.20 (D:26-262) Replication factor C2 {Baker' | 4e-34 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 4e-33 | |
| d2cula1 | 230 | c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T | 1e-32 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 1e-32 | |
| d1sxjb2 | 224 | c.37.1.20 (B:7-230) Replication factor C4 {Baker's | 4e-30 | |
| d1sxjc2 | 227 | c.37.1.20 (C:12-238) Replication factor C3 {Baker' | 1e-29 | |
| d1a5ta2 | 207 | c.37.1.20 (A:1-207) delta prime subunit of DNA pol | 4e-28 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 2e-27 | |
| d2gnoa2 | 198 | c.37.1.20 (A:11-208) gamma subunit of DNA polymera | 2e-26 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 1e-24 | |
| d1sxja2 | 253 | c.37.1.20 (A:295-547) Replication factor C1 {Baker | 2e-24 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 2e-20 | |
| d1jr3a1 | 126 | a.80.1.1 (A:243-368) gamma subunit {Escherichia co | 2e-20 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 2e-14 | |
| d1svva_ | 340 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 4e-13 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 8e-13 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 8e-13 | |
| d1fc4a_ | 401 | c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E | 1e-09 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 1e-08 | |
| d1g8pa_ | 333 | c.37.1.20 (A:) ATPase subunit of magnesium chelata | 1e-08 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 2e-04 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 5e-04 | |
| d1viaa_ | 161 | c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact | 5e-04 | |
| d1kaga_ | 169 | c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia | 6e-04 | |
| d1d2na_ | 246 | c.37.1.20 (A:) Hexamerization domain of N-ethylmal | 0.002 | |
| d1y63a_ | 174 | c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma | 0.003 |
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 469 bits (1208), Expect = e-154
Identities = 215/376 (57%), Positives = 290/376 (77%), Gaps = 1/376 (0%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
+ L + DP+++ I +E++RQ+ IELIASEN+ S AVMEAQG++LTNKYAEGYPG+RYY
Sbjct: 2 KYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYY 61
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGG 125
GGC+++D++E++A R K++F AE ANVQPHSG+QAN AV+F+VL GDT++GM+L GG
Sbjct: 62 GGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGG 121
Query: 126 HLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFE 184
HLTHG +N SG +N + YG++ + IDY V A+ ++PKLI+A ASAY + IDF
Sbjct: 122 HLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIIDFA 181
Query: 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKK 244
+F IA + +Y MVDMAH AGL+AAG +PNPVP+A F+T+TTHK+LRGPRGG IL +++
Sbjct: 182 KFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQ 241
Query: 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304
+ K I+ A+FPGIQGGPLMHVIAAKAVAF E L+ DFK Y K+VV NAK L+ L G
Sbjct: 242 FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGF 301
Query: 305 RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364
+VSGGT +H++LVDLR +++TGK AE +L+ I NKN+IP DPE P+ TSGIR+G++
Sbjct: 302 TLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTA 361
Query: 365 AITTRGFSELEIIKVV 380
A+TTRGF E+ ++
Sbjct: 362 AVTTRGFGLEEMDEIA 377
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} Length = 416 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Score = 464 bits (1195), Expect = e-152
Identities = 217/380 (57%), Positives = 288/380 (75%), Gaps = 3/380 (0%)
Query: 4 KNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKR 63
+ N++ D ++W+ + +EK RQ +IELIASENYTS VM+AQG+ LTNKYAEGYPGKR
Sbjct: 3 REMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKR 62
Query: 64 YYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
YYGGC+++D++E++AI+R K++F A+ ANVQPHSGSQAN AV+ ++L PGDT++GM+L
Sbjct: 63 YYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAH 122
Query: 124 GGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
GGHLTHG +N SGK +N + YG++ IDY +E AK++KPK+II G SAYS +D+
Sbjct: 123 GGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDW 182
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
+ IA +I +Y VDMAH AGL+AAG YPNPVP A +T+TTHK+L GPRGG IL K
Sbjct: 183 AKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKG 242
Query: 244 KYK---KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300
+ K +NSAVFPG QGGPLMHVIA KAVA KE ++P+FK YQ+QV KNAK + ++
Sbjct: 243 GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFL 302
Query: 301 QRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIR 360
+RG ++VSGGT +H+ LVDL +K +TGK A++ L ANI NKNS+PNDP+ P+ TSGIR
Sbjct: 303 ERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIR 362
Query: 361 LGSSAITTRGFSELEIIKVV 380
+G+ AIT RGF E E ++
Sbjct: 363 VGTPAITRRGFKEAEAKELA 382
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 470 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 436 bits (1123), Expect = e-141
Identities = 179/447 (40%), Positives = 255/447 (57%), Gaps = 42/447 (9%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
+ L D ++++II KE RQ +ELIASEN+ S AV+EA G+ L NKY+ GYPG+RY
Sbjct: 9 AQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRY 68
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG + ID +E + R + + + NVQP+SGS AN AV+ +++ P IMG+
Sbjct: 69 YGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLD 128
Query: 121 LQEGGHLTHGMM-----LNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGA 174
L +GGHLTHG M ++ + +F S+ Y +N IDY ++E A+ PKLIIAG
Sbjct: 129 LPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGT 188
Query: 175 SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234
S YS+ +D+ R IA +Y M DMAH +GL+ AG P+P +T+TTHK+LRG
Sbjct: 189 SCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGC 248
Query: 235 RGGFILMKK---------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKP 279
R G I ++ + +INSAVFPG+QGGP H IA AVA K+ + P
Sbjct: 249 RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP 308
Query: 280 DFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339
+FK YQ+QVV N + LS L + G +IV+GG+ +H+ILVDLR+K G AE +LE+ +I
Sbjct: 309 EFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSI 368
Query: 340 ICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV----------------LAR 383
CNKN+ P D SG+RLG+ A+T+RG E + KV
Sbjct: 369 ACNKNTCPGDK-SALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGP 427
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKK 410
+ F + + + + AL ++
Sbjct: 428 RATLKEFKEKLAGDEKHQRAVRALRQE 454
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 463 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Score = 416 bits (1070), Expect = e-133
Identities = 179/403 (44%), Positives = 249/403 (61%), Gaps = 26/403 (6%)
Query: 3 IKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGK 62
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGK
Sbjct: 3 TGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGK 62
Query: 63 RYYGGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMG 118
RYYGG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG
Sbjct: 63 RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMG 122
Query: 119 MSLQEGGHLTHG-----MMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIA 172
+ L +GGHLTHG ++ + +F S+ Y LN K IDY ++ A+ +P+LIIA
Sbjct: 123 LDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIA 182
Query: 173 GASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLR 232
G SAY++ ID+ R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LR
Sbjct: 183 GTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLR 242
Query: 233 GPRGGFILMKKKYK---------------KIINSAVFPGIQGGPLMHVIAAKAVAFKEVL 277
G R G I +K K IN AVFP +QGGP H IAA AVA K+
Sbjct: 243 GARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQAC 302
Query: 278 KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESA 337
P F+ Y QV+KNA+ ++ L +RG +VSGGT +H++LVDLR K + G AE +LE
Sbjct: 303 TPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELV 362
Query: 338 NIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
+I NKN+ P D G+RLG+ A+T+R F E + +VV
Sbjct: 363 SITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVV 404
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Score = 227 bits (579), Expect = 3e-68
Identities = 129/242 (53%), Positives = 176/242 (72%), Gaps = 5/242 (2%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F ++GQ H+ +L N L R+HHAYLF+GTRGVGKT+I+R+LAK LNC
Sbjct: 1 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 60
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT+ PCG C C +I+ G F+D IE+DAAS + + LL+ YAP R
Sbjct: 61 -----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 115
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 116 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 175
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L +ILN+E+I E AL L+A A+GS+RDALSLTDQAI +++ ++
Sbjct: 176 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 235
Query: 620 ML 621
ML
Sbjct: 236 ML 237
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 166 bits (421), Expect = 2e-44
Identities = 54/412 (13%), Positives = 119/412 (28%), Gaps = 64/412 (15%)
Query: 25 RQNNNIELIASEN-YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLK 83
+ N L+ SE+ + L G + + A G + G + + + +K
Sbjct: 29 KSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSYYALAE----SVK 84
Query: 84 KIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTH-------------G 130
IF + + H G A Q ++ + G+ + ++ G
Sbjct: 85 NIFGYQYT-IPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQING 143
Query: 131 MMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLII---------AGASAYSQY 180
+ K D + +E ++ P + +
Sbjct: 144 CTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSL 203
Query: 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--------------VPFADFITST 226
+ + Y IAK + ++D A +A + +AD + +
Sbjct: 204 ANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMS 263
Query: 227 THKSLRGPRGGFILMKKK---YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDF-- 281
K P GG + MK + +G P + A+ V D
Sbjct: 264 AKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN 323
Query: 282 KIYQKQVVKNAKILSKILDQRGIRIVSGG-----TKSHIILVDLRNKKITGK-IAESILE 335
+ + + L L++ G+ G + +L + + + +A + +
Sbjct: 324 LDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYK 383
Query: 336 SANIICNKNSIP-------NDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
A I + + P +RL I +++ + ++
Sbjct: 384 VAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRL---TIPRATYTQTHMDFII 432
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Score = 155 bits (393), Expect = 6e-41
Identities = 58/420 (13%), Positives = 103/420 (24%), Gaps = 60/420 (14%)
Query: 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKF-IDLIE----------- 75
+++ S QG K+ G ++G F DL
Sbjct: 5 KSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLIH 64
Query: 76 ----KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM 131
A +++NA+ S AN V ++++ GD ++ +
Sbjct: 65 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSAL 124
Query: 132 MLNMSGKWFNSICY------GLNKKEKIDYKKVEYLAKKNKPK----------LIIAGAS 175
+ + G D KK+ LA K P+ +I +
Sbjct: 125 AMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT 184
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN----------PVPFADFITS 225
+ ++ Y D A N P +
Sbjct: 185 YDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQ 244
Query: 226 TTHKSLRGPRGGFILMKKK----------YKKIINSAVFPGIQGGPLMHVIAAKAVAFKE 275
+ HK G + KK K N++ + P + AA V
Sbjct: 245 SVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAM 304
Query: 276 VLKPDFKIYQKQVVKNAKILSK-------ILDQRGIRIVSGGTKSHIILVDLRNKKITGK 328
+ ++ K + +V+G D+ N +
Sbjct: 305 QEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWR 364
Query: 329 IAESILESANIICNKNSIPNDPEK-PYFTSGIRLGSSAITTRGFSELEIIKVVLARKYRP 387
+ A N DP K T GI + G + + P
Sbjct: 365 FEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIP 424
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 147 bits (371), Expect = 4e-38
Identities = 67/405 (16%), Positives = 119/405 (29%), Gaps = 60/405 (14%)
Query: 24 QRQNNNIELIASEN-YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRL 82
Q N L+ S++ Y L + ++A G Y G + +EK +
Sbjct: 29 QEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMIGDEAYAGSENFYHLEK----TV 84
Query: 83 KKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSL---QEGGHLTHGMMLNMSGKW 139
K++F + V H G A + + PG + G +G +
Sbjct: 85 KELFGFKHI-VPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDIVRD 143
Query: 140 FNSICYGLNK-KEKIDYKKVEYLAKKNKPKLI---------IAGASAYSQYIDFERFYHI 189
K ID K+ L K+ + I + + +
Sbjct: 144 EAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEM 203
Query: 190 AKNINSYFMVDMAH--------------YAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
A D Y + +AD T + K
Sbjct: 204 ASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI 263
Query: 236 GGFILMK-----KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVK 290
GGF+ M K+++ GG + A A+ +E ++ + Y + VK
Sbjct: 264 GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYE---YIEHRVK 320
Query: 291 NAKILSKILDQRGIRIVSGGTKSHIILVDLR--------NKKITGKIAESILESANIICN 342
+ L L + G+ IV T H + +D R ++ +A SI +
Sbjct: 321 QVRYLGDKLREAGVPIVE-PTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSM 379
Query: 343 KNSIPNDPEKPYF-------TSGIRLGSSAITTRGFSELEIIKVV 380
+ I + +RL I R ++ + V
Sbjct: 380 ERGIVSAGRSKETGENHRPKLETVRL---TIPRRVYTYAHMDVVA 421
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 137 bits (345), Expect = 1e-36
Identities = 53/251 (21%), Positives = 97/251 (38%), Gaps = 15/251 (5%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + N L ++ L + D+ R L G G GK T L + + G+
Sbjct: 4 KYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVY 63
Query: 444 GN---GGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGI---------NEMAQLLEQT 491
+ + + ++ D + I +M Q+ Q
Sbjct: 64 RLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQD 123
Query: 492 IYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCI 551
+ RYK +I+E + LT A A+ +T+E+ K I+ I+ I + S+C+
Sbjct: 124 SKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCL 183
Query: 552 QFNLKKMLHHDIVNNLCYILNKENIKFET-SALNLIATGAQGSMRDALSLTDQAINYSSE 610
+I L ++ E I+ ET L IA + G++R +L + + +
Sbjct: 184 LIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA--LNN 241
Query: 611 KITLNSMQEML 621
++ L S ++
Sbjct: 242 ELALKSSSPII 252
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 133 bits (336), Expect = 1e-35
Identities = 68/252 (26%), Positives = 113/252 (44%), Gaps = 28/252 (11%)
Query: 373 ELEIIKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRI 432
E+++++ KYRP + ++GQ HI K L + + + H LF G GVGKTT +
Sbjct: 6 EVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALA 64
Query: 433 LAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI 492
LA+ L +++E++A+ RGIN + + +++
Sbjct: 65 LARELFG------------------------ENWRHNFLELNASDERGINVIREKVKEFA 100
Query: 493 YAPI--NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRC 550
A +KI +DE LT A A+ +T+E ++FIL+ KI + SRC
Sbjct: 101 RTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 160
Query: 551 IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE 610
F + + DI L YI E ++ L I A+G MR A+++ A +
Sbjct: 161 AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAA-LDK 219
Query: 611 KITLNSMQEMLS 622
KIT ++ + S
Sbjct: 220 KITDENVFMVAS 231
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 129 bits (324), Expect = 4e-34
Identities = 53/248 (21%), Positives = 100/248 (40%), Gaps = 17/248 (6%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
KYRP N + + Q+H L L L H LF G G GKT+ L K L
Sbjct: 2 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGP 60
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
+ + + G + ++ + +++ ++ + Y
Sbjct: 61 DL--------MKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYP---CPPY 109
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
KI ++DE +T A +A+ +T+E +F L +I + S+C +F K +
Sbjct: 110 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDA 169
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS-----SEKITLN 615
+ ++ L +I +EN+K + L I + G +R ++L A + + IT
Sbjct: 170 SNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITST 229
Query: 616 SMQEMLSI 623
++E+ +
Sbjct: 230 QVEELAGV 237
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 126 bits (317), Expect = 4e-33
Identities = 45/249 (18%), Positives = 95/249 (38%), Gaps = 26/249 (10%)
Query: 386 RPSNFNTLIGQNHISKSLINALD----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIG 441
RP + + IGQ ++ K L AL+ + + L G G+GKTT++ I+A L
Sbjct: 4 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT-- 61
Query: 442 IDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYK 501
S V + G + + L + + + + +
Sbjct: 62 ----------NIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIE 111
Query: 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSR-CIQFNLKKMLH 560
+ ID + A K++ + + ATT + + SR I L
Sbjct: 112 DFQIDIMIGKGPSA-----KSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTV 166
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLT----DQAINYSSEKITLNS 616
++ + + +++ E +A +IA ++G+ R A+ LT D +++I +
Sbjct: 167 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDI 226
Query: 617 MQEMLSIID 625
+ + + +++
Sbjct: 227 VLKTMEVLN 235
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Score = 125 bits (314), Expect = 1e-32
Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 14/204 (6%)
Query: 763 AVLTVLDAMGGIMAIATDKSGI---QFRILNSSKGAAVRATRAQVDRILYKQAIRFYLEN 819
+LT + + K V A A+ +L
Sbjct: 29 GLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLE---------G 79
Query: 820 QLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGR 879
L+LFQ L+++ N+++GV T G + V+L G+FL ++ +G AGR
Sbjct: 80 LRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGR 139
Query: 880 FGDFSTTSLAKRLKELQLSHGRLKTGTP--PRIDKRTIDFSKMEEQIGDFDPVPVFSVLG 937
+ S L + L L + P P + + + + + + G
Sbjct: 140 LSEASYPDLLEDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEG 199
Query: 938 NINLHPKQLSCFITHTNEKTHNII 961
+ +E+ +
Sbjct: 200 LYAVGLCVREGDYARMSEEGKRLA 223
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 131 bits (329), Expect = 1e-32
Identities = 52/410 (12%), Positives = 116/410 (28%), Gaps = 61/410 (14%)
Query: 24 QRQNNNIELIASEN-YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRL 82
+ N L+ S Y L + +++A G Y G + ++ +
Sbjct: 29 KEAGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDLKD----KA 84
Query: 83 KKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNS 142
K++FN + + H G A +F +L H +
Sbjct: 85 KELFNYDYI-IPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGC 143
Query: 143 ICYGL------------NKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYH-- 188
+ + K D KK++ ++ I+A S + +
Sbjct: 144 KAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMS 203
Query: 189 -------IAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--------------ADFITSTT 227
IAK + ++D A + + +P AD +T +
Sbjct: 204 NLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSA 263
Query: 228 HKSLRGPRGGFILMKKKYK-KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPD--FKIY 284
K GG + ++ + + ++G +A + +A + + Y
Sbjct: 264 KKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEY 323
Query: 285 QKQVVKNAKILSKILDQRGIRIVSGG------TKSHIILVDLRNKKIT-GKIAESILESA 337
+ K L L + GI I ++ + + + ++ +
Sbjct: 324 LHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLES 383
Query: 338 NIICNKNSIP-------NDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
+ + +K +RL I R ++ + +
Sbjct: 384 GVRAVEIGSFLLGRDPATGEQKHADMEFMRL---TIARRVYTNDHMDYIA 430
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 117 bits (293), Expect = 4e-30
Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 23/241 (9%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
KYRP + ++G L + H + +G G+GKTT LA L
Sbjct: 5 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGR 63
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
S G + D G + + + Q ++
Sbjct: 64 ---------SYADGVLELNASDDRGIDV------------VRNQIKHFAQKKLHLPPGKH 102
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
KI ++DE +T A A+ +T+E +F A + KI + S+C K+
Sbjct: 103 KIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSD 162
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEM 620
D++ L I+ E++K+ L I A+G MR A++ + + +++ ++
Sbjct: 163 EDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA-GHGLVNADNVFKI 221
Query: 621 L 621
+
Sbjct: 222 V 222
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 116 bits (290), Expect = 1e-29
Identities = 50/247 (20%), Positives = 99/247 (40%), Gaps = 31/247 (12%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
KYRP + + GQN + ++ +D+ +L H LF G G GKT+ LA+ +
Sbjct: 4 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYG- 61
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINA-- 498
+E++A+ RGI+ + ++
Sbjct: 62 -----------------------KNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSK 98
Query: 499 RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM 558
+K+ ++DE +T+ A NA+ + +E K +F + K+ +LS+C +F + +
Sbjct: 99 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPL 158
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS----EKITL 614
I + +L E +K +A + + G MR L++ ++I+
Sbjct: 159 PQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISD 218
Query: 615 NSMQEML 621
+ + E
Sbjct: 219 DVIYECC 225
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Score = 111 bits (277), Expect = 4e-28
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 7/205 (3%)
Query: 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455
+ L+ + R HHA L G+G + L++ L C G+
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRG-- 64
Query: 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHA 515
C + + + +T G++ + ++ E+ K+ + + +LT A
Sbjct: 65 CQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAA 124
Query: 516 FNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKEN 575
NA+LKTLEEPP F LAT EP+++ T+ SRC L V L
Sbjct: 125 ANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL-----SRE 179
Query: 576 IKFETSALNLIATGAQGSMRDALSL 600
+ AL + GS AL+L
Sbjct: 180 VTMSQDALLAALRLSAGSPGAALAL 204
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 110 bits (275), Expect = 2e-27
Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 29/251 (11%)
Query: 386 RPSNFNTLIGQNHISKSLINALDKKRLH----HAYLFTGTRGVGKTTISRILAKCLNCIG 441
RP + IGQ + + L L+ + L G G+GKTT++ ++A L
Sbjct: 4 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-N 62
Query: 442 IDGNGGITSQPCGKCSVCVK--IDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
+ G + G + + ++ G + E+ S + + +E
Sbjct: 63 LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMED--------- 113
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLS-RCIQFNLKKM 558
+V+D V A +T+ I ATT P I +LS I +L+
Sbjct: 114 ---FVMDIVIGQGPAA-----RTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY 165
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS----EKITL 614
++ + ++ A I ++G+MR A L + +++ E IT
Sbjct: 166 TPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITR 225
Query: 615 NSMQEMLSIID 625
E L+ +
Sbjct: 226 ERALEALAALG 236
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Score = 105 bits (264), Expect = 2e-26
Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 37/214 (17%)
Query: 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460
++L ++K L G +S L + +
Sbjct: 4 ETLKRIIEKSEGIS-ILINGEDLSYPREVSLELPEYVE---------------------- 40
Query: 461 KIDNGCFMDYIEMDAAS-TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAM 519
D +E+D GI+++ + + Y+P K ++ + +T A NA
Sbjct: 41 -KFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAF 99
Query: 520 LKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLK---------KMLHHDIVNNLCYI 570
LK LEEPP+Y +L T + T+ SR + + K D+ L +
Sbjct: 100 LKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLL 159
Query: 571 LNKENIKFETSALNLIATGAQGSMRDALSLTDQA 604
+ + K A L A G + ++L + +
Sbjct: 160 --ERDFKTALEAYKLGAEKLSG-LMESLKVLETE 190
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 103 bits (256), Expect = 1e-24
Identities = 39/278 (14%), Positives = 81/278 (29%), Gaps = 35/278 (12%)
Query: 380 VLARKYRPSNFNTLIGQ-----NHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
V Y P G+ L++ ++ Y G G+GKTT+++
Sbjct: 8 VFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTV 67
Query: 435 KCLNCIGIDGNGGITSQPCGKCSVC------VKIDNGCFMDYIEMDAASTRGINEMAQLL 488
K ++ + + I A + + + L
Sbjct: 68 KRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNL 127
Query: 489 EQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPK-----YIKFILATTEP---- 539
+ + + + + +L+ EE P I F+L ++
Sbjct: 128 YVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALS 187
Query: 540 ---QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIK--FETSALNLIA------T 588
+KIP + +L ++ L +E L LI+
Sbjct: 188 YMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK 247
Query: 589 GAQGSMRDALSLTDQAINY----SSEKITLNSMQEMLS 622
G GS R A+ A + ++ + +++ +S
Sbjct: 248 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 285
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 101 bits (252), Expect = 2e-24
Identities = 30/248 (12%), Positives = 85/248 (34%), Gaps = 8/248 (3%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALD--KKRLHHAYLFTGTRGVGKTTISRILAKC-LNCI 440
KY P+N + G L N L + +++ G G G + + +
Sbjct: 7 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKT 66
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
+ + ++ +A + + +N ++
Sbjct: 67 TAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK--HNEEAQNLNGKH 124
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPI--TVLSRCIQFNLKKM 558
+ ++DEV ++ + + + K ++ + +P C+ ++
Sbjct: 125 FVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRP 184
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
+ I + L I +E K + + ++ + +G +R ++L I+ +++ I ++
Sbjct: 185 DANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL-STISTTTKTINHENIN 243
Query: 619 EMLSIIDQ 626
E+ ++
Sbjct: 244 EISKAWEK 251
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 92.6 bits (228), Expect = 2e-20
Identities = 46/349 (13%), Positives = 98/349 (28%), Gaps = 38/349 (10%)
Query: 34 ASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAA 91
+S+N V +A L + YG + +++ + +IF +
Sbjct: 8 SSDNIAGASPEVAQA----LVKHSSGQAGP---YGTDELTAQVKR----KFCEIFERDVE 56
Query: 92 NVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKE 151
+G+ AN ++ P I + G S G K
Sbjct: 57 VFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKL 116
Query: 152 KIDYKKVEYLAKKNKPKLIIAGASAYSQY---------IDFERFYHIAKNINSYFMVDMA 202
I + K + +Q + E + K+ + +D +
Sbjct: 117 DIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGS 176
Query: 203 HYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGG 260
+A + + A + + G ++ + G
Sbjct: 177 RFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGH 236
Query: 261 PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDL 320
+ A + + ++ A+ L++ L+ G V GGT+++I+ L
Sbjct: 237 LSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRL 296
Query: 321 RNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369
+ I L A + + + +R +S TT
Sbjct: 297 DSAMIDA------LLKAGFGFYHD--------RWGPNVVRFVTSFATTA 331
|
| >d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]} Length = 126 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: gamma subunit species: Escherichia coli [TaxId: 562]
Score = 86.3 bits (213), Expect = 2e-20
Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 624 IDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILI 683
+D + +++A+ E +G ++++ N+ + + +L ++ LLH+I+++Q+SP L
Sbjct: 2 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 61
Query: 684 KDSPNY-NEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739
D + +L++ IQL+YQ + GR EL APD G MTLLR L F
Sbjct: 62 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 118
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 74.0 bits (180), Expect = 2e-14
Identities = 54/360 (15%), Positives = 107/360 (29%), Gaps = 33/360 (9%)
Query: 34 ASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAA 91
S+ T + + +A A+ G YG I+ +E+ + F EAA
Sbjct: 5 RSDTVTKPTEEMRKA--------MAQAEVGDDVYGEDPTINELER----LAAETFGKEAA 52
Query: 92 NVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKE 151
P SG+ NQ + GD ++ + G M +SG + + +
Sbjct: 53 LFVP-SGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMD 111
Query: 152 KIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF-----ERFYHIAKNINSY-FMVDMAHYA 205
D +K + P+ + E I + V +
Sbjct: 112 PDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGAR 171
Query: 206 GLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHV 265
A+ PV + L + + +
Sbjct: 172 IFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMR 231
Query: 266 IAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKI 325
A A + K+ +NA+ L+ L + G + K++++++ N K+
Sbjct: 232 QAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKV 291
Query: 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSE--LEIIKVVLAR 383
L ++ ++ N + IRL + +R E L I + + +
Sbjct: 292 NAHGFIEALRNSGVLAN----------AVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 341
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Score = 70.0 bits (169), Expect = 4e-13
Identities = 40/347 (11%), Positives = 91/347 (26%), Gaps = 35/347 (10%)
Query: 34 ASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAA 91
++ + +++ + + G YG + + ++ A
Sbjct: 5 VNDYSVGMHPKILDL----MARDNMTQHAG---YGQDSHCAKAAR----LIGELLERPDA 53
Query: 92 NVQP-HSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK 150
+V G+Q N L P + ++ L G + K + C +
Sbjct: 54 DVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLR 113
Query: 151 EKIDYKKVEYLAKKNKPKLIIAG------ASAYSQYIDFERFYHIAKNINSYFMVDMAHY 204
+ ++ + + E K Y +D A
Sbjct: 114 VADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARL 173
Query: 205 AGLIAAGEYPNPVPFADFITSTTHKSLRGPRG--GFILMKKKYKKIINSAVFPGIQGGPL 262
A +++ + +T + G G L+ N+ +G +
Sbjct: 174 ASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALM 233
Query: 263 MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322
+ F K A IL L+ GIR+ S+ +
Sbjct: 234 AKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSA-SNQLFPI--- 289
Query: 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369
+ + + ++ ++ + +RL +S T
Sbjct: 290 --LENTMIAELNNDFDMY----TVEPLKDGT---CIMRLCTSWATEE 327
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 68.3 bits (165), Expect = 8e-13
Identities = 30/274 (10%), Positives = 65/274 (23%), Gaps = 37/274 (13%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINAL-----DKKRLHHAYLFTGTRGVGKTTISRILA 434
V + Y P L + + L L + + G G GKT R L
Sbjct: 8 VFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLW 64
Query: 435 KCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYA 494
+ I +E LL + +
Sbjct: 65 ELYKD---KTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVE--HL 119
Query: 495 PINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKY----IKFILATTEP---QKIPITVL 547
Y V+D+ L + ++ +E K I ++ + +
Sbjct: 120 RERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTR 179
Query: 548 SRCIQ--FNLKKMLHHDIVNNLCYILNKENIKF-----------ETSALNLIATGAQGSM 594
+ I + L + + + +G
Sbjct: 180 GIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDA 239
Query: 595 RDALSLTDQAINYS----SEKITLNSMQEMLSII 624
R A+ + ++ + + I +++ +
Sbjct: 240 RLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 273
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 69.5 bits (168), Expect = 8e-13
Identities = 51/368 (13%), Positives = 117/368 (31%), Gaps = 22/368 (5%)
Query: 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAIN-----RLK 83
NI+ + + + +A ++ +GY + + +D I+ I+ +L
Sbjct: 4 NIDPLQTGGKLTEEARQA-----LLEWGDGYSVCDFCTTGR-LDEIKTPPIHDFIHNQLP 57
Query: 84 KIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSI 143
K + A V +A AV S+ ++ ++
Sbjct: 58 KFLGCDVARVTN-GAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKT 116
Query: 144 CYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAH 203
Y ++ + KK ++ Y + IAK + Y + + +
Sbjct: 117 DYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVN 176
Query: 204 YAGLIAAGEYPNPVPFADFITSTTHKSLRGP-RGGFILMKKKYKKIINSAVFPGIQGGPL 262
A I ADFI + HKS+ G + MK+++ +I+
Sbjct: 177 GAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVE 236
Query: 263 MHVIAAKAVAFKEVLKPDFKIYQ-----KQVVKNAKILSKILDQRGIRIVSGGTKSH-II 316
+ A+ ++ + + + V+ A+ + +++ GI+ + +H ++
Sbjct: 237 LLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLM 296
Query: 317 LVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSEL-E 375
K A+ I KP T +L + ++ +
Sbjct: 297 FFHAEVLYEISKKAKGGRFFLYRELKSRKIHG--IKPGLTRYFKLSTYGLSDEEVDYVLN 354
Query: 376 IIKVVLAR 383
K ++ +
Sbjct: 355 AFKEIIEK 362
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Score = 59.8 bits (144), Expect = 1e-09
Identities = 68/347 (19%), Positives = 123/347 (35%), Gaps = 28/347 (8%)
Query: 34 ASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE 89
+ NY LA ++ A + + + G R+ G + K +L E
Sbjct: 51 CANNYLGLANHPDLIAAAKAGM-DSHGFGMASVRFICGTQDSH---KELEQKLAAFLGME 106
Query: 90 AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK 149
A + S AN +F ++L D I+ +L + G+ L + + Y N
Sbjct: 107 DA-ILYSSCFDANGGLFETLLGAEDAIISDALNHASII-DGVRLCKAKR----YRYANND 160
Query: 150 KEKIDYKKVEYLAKKNKPKLIIAGA--SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGL 207
++++ + E + LI S + + +A ++ MVD +H G
Sbjct: 161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGF 220
Query: 208 IAAG-----EYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPL 262
+ EY + + D IT T K+L G GG+ +K+ + + P + L
Sbjct: 221 VGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSL 280
Query: 263 MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322
I A + + ++ NA+ + + G + G II V L +
Sbjct: 281 APAI-VAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTL--AGADHAIIPVMLGD 337
Query: 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369
+ K A + + I P P+ + IR SA T
Sbjct: 338 AVVAQKFARELQK-EGIYVTGFFYPVVPKG---QARIRTQMSAAHTP 380
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 56.8 bits (136), Expect = 1e-08
Identities = 34/290 (11%), Positives = 88/290 (30%), Gaps = 21/290 (7%)
Query: 67 GCKFIDLIEKIAINRLKKIFNAEAAN-VQPHSGSQANQAVFFSV--LNPGDTIMGMSLQE 123
G + + + K P S + + + ++
Sbjct: 107 GASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASH 166
Query: 124 GGHLTHGMMLNMSGKWFNSICYGLNKK---EKIDYKKVEYLAKKNKPKLII-AGASAYSQ 179
+ + M+ + ++ G E I+ + + N+P ++
Sbjct: 167 KSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRN 226
Query: 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRGG 237
D I +N + +++ A+ E D + S++ K+L P GG
Sbjct: 227 SDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGG 286
Query: 238 FILM--KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKIL 295
++ ++ K I+ + P+++ + + + K + ++L
Sbjct: 287 GLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELL 346
Query: 296 SKILDQRGIRI----------VSGGTKSHIILVDLRNKKITGKIAESILE 335
+ + + G + +S + I L N ++TG +
Sbjct: 347 NDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTD 396
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Score = 56.1 bits (134), Expect = 1e-08
Identities = 23/169 (13%), Positives = 55/169 (32%), Gaps = 3/169 (1%)
Query: 386 RPS-NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDG 444
RP F+ ++GQ + +L+ + L G RG GK+T R LA L I
Sbjct: 1 RPVFPFSAIVGQEDMKLALLLTAVDPGIGG-VLVFGDRGTGKSTAVRALAALLPEIEAVE 59
Query: 445 NGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYV 504
++S + + + G++E +++ ++ +
Sbjct: 60 GCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSE-DRVVGALDIERAISKGEKAF 118
Query: 505 IDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQF 553
+ + + + + + +L + + + I+
Sbjct: 119 EPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRH 167
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 42.7 bits (100), Expect = 2e-04
Identities = 31/237 (13%), Positives = 65/237 (27%), Gaps = 34/237 (14%)
Query: 399 ISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458
+ L + +LF G GKTT++ L + ++ N
Sbjct: 140 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLP----------- 188
Query: 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH---A 515
+ + ++ ++ P I+ + L + +
Sbjct: 189 ----LDRLNFELGVAIDQFLVVFEDVKGTGGESRDLP-----SGQGINNLDNLRDYLDGS 239
Query: 516 FNAMLKTLEEPPKYIKF--ILATTEPQKIPITVLSR---CIQFNLKKMLHHDIVNNLCYI 570
L+ + F + T +P T+ +R I F K L + ++
Sbjct: 240 VKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL-KHCLERSEFL 298
Query: 571 LNKENIKFETSALNLIATGAQGSMRDAL-SLTDQAINYSSEKIT-LNSMQEMLSIID 625
L K I+ S + L+ I E++ S+ +
Sbjct: 299 LEKRIIQ---SGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSVYQKMKF 352
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 40.4 bits (93), Expect = 5e-04
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 5/114 (4%)
Query: 413 HHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIE 472
HH Y+ G G GK+ ++ +A L+ +DG+ + + D
Sbjct: 6 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---NIEKMASGEPLNDDDRKP 62
Query: 473 MDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
A M + + ++ + + D + + LK +
Sbjct: 63 WLQALNDAAFAMQRTNKVSLIVCSALKK--HYRDLLREGNPNLSFIYLKGDFDV 114
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Score = 39.9 bits (92), Expect = 5e-04
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIE 472
F G G GK+T++R LAK L+ + +D + I + K S + F E
Sbjct: 5 FIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQE 59
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Score = 39.7 bits (91), Expect = 6e-04
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 408 DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF 467
+K+ + G G GK+TI R LA+ LN D + I + ++
Sbjct: 1 EKRNI----FLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEG 56
Query: 468 MDYIEM 473
E
Sbjct: 57 FRDREE 62
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 39.2 bits (90), Expect = 0.002
Identities = 31/254 (12%), Positives = 75/254 (29%), Gaps = 37/254 (14%)
Query: 390 FNTLIGQNHISKSLINAL---------DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
N +I +++ + + L G GKT ++ +A+ N
Sbjct: 8 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP 67
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
I + + C + Y S ++++ +LL+
Sbjct: 68 FIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQL--SCVVVDDIERLLDYVPI------- 118
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
L A +LK + + I T+ + + +H
Sbjct: 119 ----GPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFS----TTIH 170
Query: 561 HDIVNNLCYILN--KENIKFETSALNLIATGAQGS-----MRDALSLTDQAINYSSEKIT 613
+ +L + F+ IA +G ++ L L + ++ E
Sbjct: 171 VPNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPE--- 227
Query: 614 LNSMQEMLSIIDQK 627
+++ L+++ ++
Sbjct: 228 -YRVRKFLALLREE 240
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Score = 38.1 bits (87), Expect = 0.003
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 1/96 (1%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
L TGT G GKT+++ ++A L+ G + + + ++ + D
Sbjct: 9 LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYD-TELDTHIIEEKDEDRL 67
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT 512
M + + + V +L
Sbjct: 68 LDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLH 103
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1342 | |||
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 100.0 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 100.0 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 100.0 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 100.0 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 100.0 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 100.0 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.95 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.95 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.95 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.94 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.94 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.94 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.92 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.92 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.91 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.91 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.91 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.9 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.87 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.87 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.87 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.87 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.86 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.86 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.85 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.85 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.85 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.85 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.85 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.84 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.84 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.84 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.82 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.8 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.8 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.8 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 99.8 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.8 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.8 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.79 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.79 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.79 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.78 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.75 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.74 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.73 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.73 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.73 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.72 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.71 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.7 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.7 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.7 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.7 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 99.68 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.67 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 99.67 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.66 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.65 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.65 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.64 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.63 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.62 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.62 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.62 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.61 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.6 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.59 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.59 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.55 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.54 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.52 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.52 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.51 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.51 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.5 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.49 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.48 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.47 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.45 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.45 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.45 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.44 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.44 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.41 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.39 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.39 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.38 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.37 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.36 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.29 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.27 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.27 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 99.23 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.2 | |
| d1jr3d1 | 127 | delta subunit {Escherichia coli [TaxId: 562]} | 99.2 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.15 | |
| d1jr3a1 | 126 | gamma subunit {Escherichia coli [TaxId: 562]} | 99.14 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.11 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 99.09 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 99.08 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.08 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.07 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.07 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.06 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.04 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.03 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.03 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.02 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 98.97 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.97 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 98.92 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.88 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.87 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.86 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 98.8 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 98.8 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.7 | |
| d1jqlb_ | 140 | delta subunit of DNA polymerase III, N-domain {Esc | 98.62 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.6 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 98.46 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 98.29 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 98.25 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.2 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 97.79 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 97.66 | |
| d2i0za2 | 169 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 97.6 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 97.57 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.54 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 97.29 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 97.04 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.95 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 96.59 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 96.52 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.94 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.94 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 95.82 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.78 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 95.51 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.44 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.44 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.41 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.3 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.24 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.24 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 95.18 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 95.15 | |
| d2gqfa2 | 148 | Hypothetical protein HI0933 {Haemophilus influenza | 95.05 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.01 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.01 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.73 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 94.7 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 94.69 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.56 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.4 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.35 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.91 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.91 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.89 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.46 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.27 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.2 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.88 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.86 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.83 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.61 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.53 | |
| d1sxjd1 | 91 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.52 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 92.49 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.17 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.12 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 92.12 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 92.07 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 91.96 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 91.84 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.78 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.7 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.6 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 91.58 | |
| d1iqpa1 | 95 | Replication factor C {Archaeon Pyrococcus furiosus | 91.48 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 91.44 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 91.16 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.09 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 90.89 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.58 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.53 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 90.5 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 90.38 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 90.29 | |
| d1a5ta1 | 123 | delta prime subunit {Escherichia coli [TaxId: 562] | 90.15 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 89.91 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 89.73 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 89.61 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 89.49 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 89.08 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 88.76 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 88.73 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 88.65 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.05 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 87.73 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 87.43 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 86.22 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 86.08 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 85.69 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 85.44 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 85.01 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 84.91 | |
| d1sxjc1 | 95 | Replication factor C3 {Baker's yeast (Saccharomyce | 84.9 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 84.38 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 84.04 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 83.89 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 83.56 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 83.29 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 83.07 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 82.95 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 82.85 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 82.54 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 82.51 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 82.29 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 82.01 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 81.52 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 81.18 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 80.95 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 80.52 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 80.26 |
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=1.6e-43 Score=404.40 Aligned_cols=375 Identities=57% Similarity=0.981 Sum_probs=357.1
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
+.++..||.+.+.+.++..|+++.|.|.++||+.||.|++++...+.++|.+|+|+.+||++++..+++|..+.++.+++
T Consensus 2 ~~l~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~l 81 (405)
T d1kl1a_ 2 KYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQL 81 (405)
T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhCHHHHHHHHHHHHHHHcCceEeccCCcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHh
Q psy13354 86 FNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKK 164 (1342)
Q Consensus 86 ~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~ 164 (1342)
||++++.+.+.||+.|+.+++.++++|||+|+.+++.+++|.+++......|..++++.++++ +++.+|++++++.+..
T Consensus 82 F~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~ 161 (405)
T d1kl1a_ 82 FGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARL 161 (405)
T ss_dssp HCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH
T ss_pred hCCCcceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998887788888899988888 6788999999999999
Q ss_pred cCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEech
Q psy13354 165 NKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKK 244 (1342)
Q Consensus 165 ~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~ 244 (1342)
.+|++|+++.+.++...|++++.++|++.|++|++|.+|..|.+.++.+++|++.+|++++|.||+|.||.||+|+++++
T Consensus 162 ~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPrgg~I~~~~~ 241 (405)
T d1kl1a_ 162 HRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQ 241 (405)
T ss_dssp HCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCEEEEECHH
T ss_pred hCcceEEecccccccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhhhhheeccccccccCCCCceEEecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK 324 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~ 324 (1342)
+.+.+....+|+..++|.....+|.+.++.+.+.+.++.+.+++.+|++.|.+.|.+.|++++.+++++|.+++++...+
T Consensus 242 ~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd~H~vlvdl~~~~ 321 (405)
T d1kl1a_ 242 FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQ 321 (405)
T ss_dssp HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT
T ss_pred hHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCccceeeccccccC
Confidence 99999999999999999999999999999998877899999999999999999999999999998899999999998878
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
.+...+..+|++.||.+....+|+.+..++-++++|+|+.+.|++++.++++.+++
T Consensus 322 ~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia 377 (405)
T d1kl1a_ 322 LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIA 377 (405)
T ss_dssp CCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHH
T ss_pred CcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHH
Confidence 88899999999999999999999988777778899999999999999999987655
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.6e-43 Score=402.03 Aligned_cols=375 Identities=58% Similarity=0.968 Sum_probs=356.1
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
-+++..||.+.+.+.++..|+++.|.|.++||+.||.|++++...+.++|.+|+|+.+||++++..+++|..+.++..++
T Consensus 5 ~~l~~~D~ei~~~i~~e~~rq~~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~l 84 (416)
T d1dfoa_ 5 MNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKEL 84 (416)
T ss_dssp CCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred CChhhcCHHHHHHHHHHHHHHHcCceEecCcccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc
Q psy13354 86 FNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN 165 (1342)
Q Consensus 86 ~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~ 165 (1342)
||++++.+.+.||+.|+.+++.++++|||+|+..+..+++|.+++......|..++.+++++++++.+|++++++.+...
T Consensus 85 F~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~ 164 (416)
T d1dfoa_ 85 FGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEH 164 (416)
T ss_dssp HTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHH
T ss_pred hCCCcceeecccCccHHHHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988888888889999998888899999999999999
Q ss_pred CCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEe---
Q psy13354 166 KPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK--- 242 (1342)
Q Consensus 166 ~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~--- 242 (1342)
+|++|+++.+.++...|++++.++|++.|++|++|.+|..|.+.++.+++|++.+|++++|+||+|.||.||+|+++
T Consensus 165 kPklIi~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPrggiI~~~~~~ 244 (416)
T d1dfoa_ 165 KPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGS 244 (416)
T ss_dssp CCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCSCEEEEESSCC
T ss_pred ccceEEecccccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccccceeeeehhhcccCCCceEEEeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC
Q psy13354 243 KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 243 ~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~ 322 (1342)
+++.+.+....+|+.+++|..+..+|.+.++.+...+.++++.+++.+|++.|.+.|.+.|++++.+++++|++++++.+
T Consensus 245 ~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTdnHlvlvdl~~ 324 (416)
T d1dfoa_ 245 EELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVD 324 (416)
T ss_dssp HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGG
T ss_pred HhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCCceeEEEecc
Confidence 47788898888999999999999999999999988878999999999999999999999999999988999999999988
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
.+.+...+..+|++.||.+....+|+.+..++-++++|+|+.+.|++++.++++..++
T Consensus 325 ~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA 382 (416)
T d1dfoa_ 325 KNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 382 (416)
T ss_dssp GTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHH
Confidence 8888899999999999999999999988777778999999999999999999987654
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=6.2e-41 Score=389.08 Aligned_cols=375 Identities=47% Similarity=0.795 Sum_probs=318.4
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
+..|+..||.+.+.+.++..|+++.|.|.++||+.|+.|++++...+.++|.+|+|+.+||+++...+++|..+.++..+
T Consensus 5 ~~~L~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~ 84 (463)
T d2a7va1 5 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALE 84 (463)
T ss_dssp CCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHH
T ss_pred cCchhhhCHHHHHHHHHHHHHHhcCeeEeccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCc----eEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-----HhhhCCceeEEEEecCC-CCCCCC
Q psy13354 85 IFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-----MLNMSGKWFNSICYGLN-KKEKID 154 (1342)
Q Consensus 85 ~~g~~~~----vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-----~~~~~g~~~~~v~~~~~-~~~~id 154 (1342)
+|+++++ .+.+.||+.|+.+++.++++|||+|+..++.+++|.+++. .....|..++.+++.++ +++.+|
T Consensus 85 lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~ID 164 (463)
T d2a7va1 85 AFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLID 164 (463)
T ss_dssp HTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBC
T ss_pred HhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCc
Confidence 9999965 6888899999999999999999999999999999998873 34556777788888877 678999
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCC
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp 234 (1342)
++++++.+...+|++|+++.+.++...|++++.++|++.|++|++|.+|..|.+.++.+++|++.+|++++|.||+|.||
T Consensus 165 yd~~~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~aDvvt~tTHKTlrGP 244 (463)
T d2a7va1 165 YNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 244 (463)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSC
T ss_pred HHHHHHHHhhcCCceEEecccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhhhhhhhchhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEec---------------hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 235 RGGFILMKK---------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 235 ~GG~iv~~~---------------~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
.||+|++++ ++.+.+....+|+..++|.....+|.+.++.+...+.++++.+++.+|++.|.+.|
T Consensus 245 rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L 324 (463)
T d2a7va1 245 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADAL 324 (463)
T ss_dssp SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 999999987 67889998889999999999999999999999988889999999999999999999
Q ss_pred HhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 300 DQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 300 ~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
.+.|++++.+++++|.+++++.+.+.+...+...|++.||.+....+|+.+ .++.++++|+|+.+.|++++.++++..+
T Consensus 325 ~~~G~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT~a~TtrG~~e~dm~~i 403 (463)
T d2a7va1 325 LERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRV 403 (463)
T ss_dssp HHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred HhCCCeeecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCC-CCCCCCceEeCCHHHHhCCCCHHHHHHH
Confidence 999999999999999999999887788999999999999999999999875 4566788999999999999999997665
Q ss_pred H
Q psy13354 380 V 380 (1342)
Q Consensus 380 ~ 380 (1342)
+
T Consensus 404 A 404 (463)
T d2a7va1 404 V 404 (463)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=100.00 E-value=1.4e-40 Score=387.48 Aligned_cols=375 Identities=47% Similarity=0.793 Sum_probs=348.1
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
+..|+..||.+.+.+.++..|+++.|.|.++||+.|+.|++++...+.++|.+|+++.+||+++...+++|..+.+++.+
T Consensus 9 ~~~l~~~D~ei~~~i~~e~~rq~~~l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~ 88 (470)
T d1rv3a_ 9 AQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQ 88 (470)
T ss_dssp TSCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-----hhhCCceeEEEEecCC-CCCCCC
Q psy13354 85 IFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-----LNMSGKWFNSICYGLN-KKEKID 154 (1342)
Q Consensus 85 ~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-----~~~~g~~~~~v~~~~~-~~~~id 154 (1342)
+||.+ ++.+.+.||+.|+.+++.+++.|||+|+.++..+++|.+++.. ....+..++.+.++++ +++.+|
T Consensus 89 lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~ID 168 (470)
T d1rv3a_ 89 AYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYID 168 (470)
T ss_dssp HTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBC
T ss_pred HhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCccc
Confidence 99986 6788888999999999999999999999999999999998742 2333456688888888 568999
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCC
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp 234 (1342)
++++++.+...+|++|+++.+.++...|++++.++|++.|++|++|.+|..|.+.++.+++|++.+|++++|.||+|.||
T Consensus 169 yd~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~aDvvt~tTHKtlrGP 248 (470)
T d1rv3a_ 169 YDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGC 248 (470)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCC
T ss_pred HHHHHHHHHhhCcceEeechhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhheeeeeeeehhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEech---------------hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 235 RGGFILMKKK---------------YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 235 ~GG~iv~~~~---------------l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
.||+|+++++ +.+.+....+|+..++|.....+|.+.++.+...+.++++.+++.+|++.|.+.|
T Consensus 249 rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L 328 (470)
T d1rv3a_ 249 RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAAL 328 (470)
T ss_dssp SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999864 7888988889999999999999999999999988889999999999999999999
Q ss_pred HhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 300 DQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 300 ~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
.+.|++++.+++++|++++++...+.+...+...|++.||.+....+|+.+ .++.++++|+|+.+.|++++.++|+..+
T Consensus 329 ~~~G~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT~alTtrG~~e~dm~~i 407 (470)
T d1rv3a_ 329 VELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDK-SALRPSGLRLGTPALTSRGLLEKDFQKV 407 (470)
T ss_dssp HHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCS-CTTSCCEEEEECHHHHHTTCCHHHHHHH
T ss_pred HhCCceeccCCCCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCC-CCCCCCeeEecCHHHHhCCCCHHHHHHH
Confidence 999999999899999999999887888899999999999999998888875 4566788999999999999999997664
Q ss_pred H
Q psy13354 380 V 380 (1342)
Q Consensus 380 ~ 380 (1342)
+
T Consensus 408 A 408 (470)
T d1rv3a_ 408 A 408 (470)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.1e-37 Score=330.75 Aligned_cols=166 Identities=20% Similarity=0.244 Sum_probs=148.7
Q ss_pred CCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEec
Q psy13354 792 SKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIG 871 (1342)
Q Consensus 792 ~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g 871 (1342)
+||||||++|||+|+ .+++++|++|++++|++|++++++++||+|.+|.+|.|++|||||||||+|+||||
T Consensus 61 ~kG~av~a~raQ~k~---------~l~~~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL~G~ihiG 131 (230)
T d2cula1 61 PKDERVWAFHARAKY---------LLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLG 131 (230)
T ss_dssp TTCCCHHHHHHHHHH---------HHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEET
T ss_pred ccchhhhhHHHHHHH---------HHhhhcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcceeeEEEEE
Confidence 799999999999654 55678999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCcchHHHHHHHHHcCCCccccccCCC--cccccCccccccceeecCCCCCCCcccccCC-CCCCCCcccc
Q psy13354 872 LKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTP--PRIDKRTIDFSKMEEQIGDFDPVPVFSVLGN-INLHPKQLSC 948 (1342)
Q Consensus 872 ~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~--~r~~~~si~~~~~~~~~~d~~~~~~f~~~~~-~~~~~~~~~c 948 (1342)
...+++||+|+.+|.+|+++|+++||+++||||||| ||++++||||++++.|+|| ..+.+|+.... .....|.++|
T Consensus 132 ~~~~~~GR~ge~~s~~Ls~~L~~lGf~~~rlkTgTPa~pR~~~~sId~~~~~~q~~d-~~~f~~~~~~~~~~~~~~~~~~ 210 (230)
T d2cula1 132 GVVEEAGRLSEASYPDLLEDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWE-EKTFRLKRLEGLYAVGLCVREG 210 (230)
T ss_dssp TEEESEEETTEECCSHHHHHHHHTTCCEEEEEEEEC-----CCEEEEEEEECGGGEE-TTTTEETTSBSEEECGGGTSCC
T ss_pred eeeeeccccCCchhhhHHHHHHhcCCceeeecCCCCCCCCCCCCeecccccccccCC-CCCceeEeeccccccceeeccc
Confidence 999999999999999999999999999999999999 9999999999999999999 87766664322 1122367899
Q ss_pred chhhcchhHHHHHHhhccc
Q psy13354 949 FITHTNEKTHNIIRSEFKN 967 (1342)
Q Consensus 949 ~~~~~~~~~~~~i~~~~~~ 967 (1342)
+.+++++++|.++.+++|.
T Consensus 211 ~~~~~~~~~~~l~~~~~~~ 229 (230)
T d2cula1 211 DYARMSEEGKRLAEHLLHE 229 (230)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhHHHHHHHHHHhhc
Confidence 9999999999999999984
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-34 Score=320.00 Aligned_cols=238 Identities=54% Similarity=0.923 Sum_probs=227.1
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
+|++||||++|++++||+++++.|.+++++++++|++|||||+|+|||++|+.+++.+++.. ..+..+|+.|.+|
T Consensus 1 ~~~~KyrP~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~-----~~~~~~~~~~~~~ 75 (239)
T d1njfa_ 1 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-----GITATPCGVCDNC 75 (239)
T ss_dssp CHHHHTCCSSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTT-----CSCSSCCSCSHHH
T ss_pred CchhhhCCCCHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCcc-----ccccCccccchHH
Confidence 48999999999999999999999999999999999999999999999999999999998753 3456789999999
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCC
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEP 539 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~ 539 (1342)
..+..+.++++++++.++..++++++++++.+...|..++++++||||+|.|+.+++++|++++|+|+++++||++|++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~ 155 (239)
T d1njfa_ 76 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 155 (239)
T ss_dssp HHHHHTCCTTEEEEETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred HHHHcCCCCeEEEecchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCc
Confidence 99999999999999998888999999999999989999999999999999999999999999999999999999999999
Q ss_pred CCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHH
Q psy13354 540 QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619 (1342)
Q Consensus 540 ~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~ 619 (1342)
+++.++|+|||..+.|.+++.+++..++..++..++..+++++++.|++.++||+|.++++|+++...+.++|+.++|++
T Consensus 156 ~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~~~~~~~~~~I~~~~v~~ 235 (239)
T d1njfa_ 156 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 235 (239)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTTSBCHHHHHH
T ss_pred cccChhHhhhhcccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888999999999
Q ss_pred Hhc
Q psy13354 620 MLS 622 (1342)
Q Consensus 620 ~v~ 622 (1342)
+++
T Consensus 236 ~lg 238 (239)
T d1njfa_ 236 MLG 238 (239)
T ss_dssp HHT
T ss_pred HhC
Confidence 885
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6.2e-28 Score=263.80 Aligned_cols=217 Identities=23% Similarity=0.371 Sum_probs=193.9
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
++|+.||||++|+|++||+++++.|.+++++++.+| +|||||||+|||++|+.+++++.+..
T Consensus 3 ~pw~eKyrP~~~~d~ig~~~~~~~L~~~~~~~~~~~-~ll~Gp~G~GKTt~a~~la~~l~~~~----------------- 64 (224)
T d1sxjb2 3 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGRS----------------- 64 (224)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHHGGG-----------------
T ss_pred CchHhHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCe-EEEECCCCCCchhhHHHHHHHHhccc-----------------
Confidence 579999999999999999999999999999999987 79999999999999999999998531
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcC---ccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAP---INARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p---~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
...++.++++++..+...+...+....... ....++++|+||+|.++...+++|+..++.++..+.++++
T Consensus 65 -------~~~~~~~~n~~~~~~~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~ 137 (224)
T d1sxjb2 65 -------YADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFA 137 (224)
T ss_dssp -------HHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEE
T ss_pred -------cccccccccccccCCceehhhHHHHHHHhhccCCCcceEEEEEecccccchhHHHHHhhhccccccceeeeec
Confidence 123578899988888887777766554433 3456789999999999999999999999999999999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHH
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e 615 (1342)
++..+++.++|+|||..++|.+++.+++..+|.++++++|+.+++++++.+++.++||+|.+++.|+.+.. ..+.||.+
T Consensus 138 ~~~~~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~~~~-~~~~i~~~ 216 (224)
T d1sxjb2 138 CNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA-GHGLVNAD 216 (224)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHSSBCHH
T ss_pred cCchhhhhhHHHHHHHHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCCcHHHHHHHHHHHHH-cCCCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987654 34578888
Q ss_pred HHHHHh
Q psy13354 616 SMQEML 621 (1342)
Q Consensus 616 ~V~~~v 621 (1342)
.|.+++
T Consensus 217 ~i~~~~ 222 (224)
T d1sxjb2 217 NVFKIV 222 (224)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887765
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.8e-28 Score=265.27 Aligned_cols=219 Identities=23% Similarity=0.388 Sum_probs=192.8
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
+||++||+|++|+|++||+++++.|.+++++++++| +|||||+|+|||++++++++++.+..
T Consensus 2 ~pw~ekyrP~~~~divg~~~~~~~L~~~i~~~~~~~-lLl~Gp~G~GKttl~~~la~~l~~~~----------------- 63 (227)
T d1sxjc2 2 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYGKN----------------- 63 (227)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTS-----------------
T ss_pred CchhhhhCCCCHHHccCcHHHHHHHHHHHHcCCCCe-EEEECCCCCChhHHHHHHHHHhhcCC-----------------
Confidence 479999999999999999999999999999999987 78999999999999999999997421
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhh--cCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIY--APINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~--~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
....+.+++.++..+++........... .....++++++|||++.++...++.|++.+++++..+++++++
T Consensus 64 -------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~ 136 (227)
T d1sxjc2 64 -------YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLA 136 (227)
T ss_dssp -------HHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred -------CcceeEEecccccCCeeeeecchhhccccccccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeecccc
Confidence 1124667777777777665555543322 3445677899999999999999999999999999999999999
Q ss_pred CCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC----CCC
Q psy13354 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS----EKI 612 (1342)
Q Consensus 537 ~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~----~~I 612 (1342)
+...++.++|++||..++|.+++.+++.++|.++++++|+.+++++++.|++.++||+|.+++.|+.+..+.. ..|
T Consensus 137 ~~~~~i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~Gd~R~ain~Lq~~~~~~~~~~~~~I 216 (227)
T d1sxjc2 137 NYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEI 216 (227)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCB
T ss_pred CcHHHhHHHHHHHHhhhccccccccccccccccccccccccCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCCee
Confidence 9999999999999999999999999999999999999999999999999999999999999999998766643 459
Q ss_pred CHHHHHHHhc
Q psy13354 613 TLNSMQEMLS 622 (1342)
Q Consensus 613 t~e~V~~~v~ 622 (1342)
|.++|.++++
T Consensus 217 t~~~v~e~~g 226 (227)
T d1sxjc2 217 SDDVIYECCG 226 (227)
T ss_dssp CHHHHHHHTT
T ss_pred CHHHHHHHhC
Confidence 9999999986
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.95 E-value=9.1e-27 Score=272.92 Aligned_cols=320 Identities=22% Similarity=0.256 Sum_probs=254.1
Q ss_pred ceeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.+..++++||++.. ++++..+++. .|+.+..+++.+.+ ...+.+||+ .+++++|.+.+++++ +|+.|+.
T Consensus 46 ~~~~FsSndYLGL~~~p~v~~a~~~al~-~yG~gs~~Sr~~~G~~~~h~~LE~----~lA~~~g~e~all~~-sG~~An~ 119 (396)
T d2bwna1 46 DITVWCGNDYLGMGQHPVVLAAMHEALE-AVGAGSGGTRNISGTTAYHRRLEA----EIAGLHQKEAALVFS-SAYNAND 119 (396)
T ss_dssp EEEECSCSCTTSGGGCHHHHHHHHHHHH-HHCSCCCSBTTTBCCBHHHHHHHH----HHHHHTTCSEEEEES-CHHHHHH
T ss_pred EEEEEEcccccCcCCCHHHHHHHHHHHH-HhCCCccccccccCCchHHHHHHH----HHHHHhCCCceeeee-cchHHHH
Confidence 46678999999986 9999888885 78888888877755 566777777 999999999999999 9999999
Q ss_pred HHHHHc--cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC--CeEEEEcCCCCC-
Q psy13354 104 AVFFSV--LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK--PKLIIAGASAYS- 178 (1342)
Q Consensus 104 ~al~al--~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~--~~liv~~~s~~~- 178 (1342)
.++.++ .++||.|+.. ...|.+....+...+. ....++++ |+++++++++... ...+++..+.++
T Consensus 120 ~~i~~l~~~~~~d~i~~D---~~~Hasi~~g~~ls~a--~~~~f~Hn-----d~~~l~~l~~~~~~~~~~~iv~egvySm 189 (396)
T d2bwna1 120 ATLSTLRVLFPGLIIYSD---SLNHASMIEGIKRNAG--PKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSM 189 (396)
T ss_dssp HHHHHHHHHSTTCEEEEE---TTCCHHHHHHHHHSCC--CEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTT
T ss_pred HHHHHHhcccCCCceeeh---hhhhhccchhhhcccc--CceEeecc-----hHHHhhhHHhhhcccCceeEEEEeeccC
Confidence 999988 4688887733 3455666666666676 44555766 7888887776432 233444466666
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCC-----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhh
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE-----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~-----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~ 251 (1342)
...|+++|.++|++||++|++||||++|.++..- +.+..+..|++++||+|+| |..|||+++++++++.++.
T Consensus 190 dGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~-g~~Gg~v~~~~~~i~~l~~ 268 (396)
T d2bwna1 190 DGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY-GVFGGYIAASARMVDAVRS 268 (396)
T ss_dssp TCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTT-CSCCEEEEECHHHHHHHHH
T ss_pred cccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccc-cccccccchhHHHHHHHHh
Confidence 5669999999999999999999999999986531 1122334699999999999 8889999999999999998
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIA 330 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~-~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~ 330 (1342)
...++.++++.+|..++++.+..+... +..++.+.++..+.+++.+.+...|+++. +..++++++.+.++....++.
T Consensus 269 ~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~--~~~spIvpv~ig~~~~~~~~a 346 (396)
T d2bwna1 269 YAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPII--DHGSHIVPVVIGDPVHTKAVS 346 (396)
T ss_dssp HCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCSSSCEEEECCCHHHHHHHH
T ss_pred hcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcC--CCCCCEEEEEeCCHHHHHHHH
Confidence 888888988888888877777666653 34556678888999999999999998873 356889999887655556777
Q ss_pred HHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 331 ESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 331 ~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
..+|+++||++.+..+|.+|.+ ..++|+++++.||.+
T Consensus 347 ~~lL~e~Gi~v~~i~~PtVp~g---~~rlRi~lsa~ht~e 383 (396)
T d2bwna1 347 DMLLSDYGVYVQPINFPTVPRG---TERLRFTPSPVHDLK 383 (396)
T ss_dssp HHHHHHHCEECCEECTTTSCTT---CCEEEECCCTTSCHH
T ss_pred HHHHHhCCEEEEEECCCcCCCC---CeeEEEEeCccCCHH
Confidence 8888878999999999999876 678999999998853
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=8.6e-27 Score=250.56 Aligned_cols=199 Identities=28% Similarity=0.369 Sum_probs=183.5
Q ss_pred ccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEE
Q psy13354 394 IGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEM 473 (1342)
Q Consensus 394 vGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i 473 (1342)
+.|+.+.+.|.+.+.+++++|++||+||+|+|||++|+.+++.+.|.. .....+|+.|.+|..+..+.++++..+
T Consensus 5 Pw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (207)
T d1a5ta2 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQ-----PQGHKSCGHCRGCQLMQAGTHPDYYTL 79 (207)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS-----CBTTBCCSCSHHHHHHHHTCCTTEEEE
T ss_pred cccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhccccc-----ccccccccccchhhhhhhccccccchh
Confidence 578999999999999999999999999999999999999999999864 345678999999999999999999998
Q ss_pred ccC---CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccE
Q psy13354 474 DAA---STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRC 550 (1342)
Q Consensus 474 ~~~---~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~ 550 (1342)
... ....+++++++++.+...+..+++||+||||+|.++.+++++|++++|+|+.++.||++|++++++.++|+|||
T Consensus 80 ~~~~~~~~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc 159 (207)
T d1a5ta2 80 APEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 (207)
T ss_dssp CCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS
T ss_pred hhhhcccccccchhhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhccee
Confidence 654 34567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHH
Q psy13354 551 IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTD 602 (1342)
Q Consensus 551 ~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~ 602 (1342)
+.+.|.+++.+++..+|++ +..+++++++.+++.++||+|++++.|+
T Consensus 160 ~~i~~~~~~~~~~~~~L~~-----~~~~~~~~~~~i~~~s~Gs~r~al~~le 206 (207)
T d1a5ta2 160 RLHYLAPPPEQYAVTWLSR-----EVTMSQDALLAALRLSAGSPGAALALFQ 206 (207)
T ss_dssp EEEECCCCCHHHHHHHHHH-----HCCCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred EEEecCCCCHHHHHHHHHH-----cCCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 9999999999999999853 4568999999999999999999998764
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.94 E-value=1.1e-26 Score=255.07 Aligned_cols=217 Identities=30% Similarity=0.468 Sum_probs=190.8
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|++||+|++|+|++||+++++.|.+++++++.+| +|||||+|+|||++|+.+++++.+..
T Consensus 11 ~~~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~-lll~Gp~G~GKTtla~~iak~l~~~~---------------- 73 (231)
T d1iqpa2 11 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGEN---------------- 73 (231)
T ss_dssp TSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCE-EEEESCTTSSHHHHHHHHHHHHHGGG----------------
T ss_pred hchHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHHHhcc----------------
Confidence 3579999999999999999999999999999999887 79999999999999999999997521
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCc--cCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPI--NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~--~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
...+++++++++..+.+.+++.......... ...++++++||++.+....++.|+++++.++.++++|++
T Consensus 74 --------~~~~~~e~n~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~ 145 (231)
T d1iqpa2 74 --------WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILS 145 (231)
T ss_dssp --------HHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred --------cCCCeeEEecCcccchhHHHHHHHHHHhhhhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEec
Confidence 1135788888876666666666665544432 346789999999999999999999999999999999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHH
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e 615 (1342)
++..+++.+++++||..+.|.+++..++..++.+.++++++.+++++++.+++.++||+|.+++.|+.+... .+.||.+
T Consensus 146 ~n~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~gdiR~ai~~Lq~~~~~-~~~it~e 224 (231)
T d1iqpa2 146 CNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DKKITDE 224 (231)
T ss_dssp ESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSEECHH
T ss_pred cCChhhchHhHhCccccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCcCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876544 5669999
Q ss_pred HHHHH
Q psy13354 616 SMQEM 620 (1342)
Q Consensus 616 ~V~~~ 620 (1342)
+|.++
T Consensus 225 ~v~~v 229 (231)
T d1iqpa2 225 NVFMV 229 (231)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88765
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=5.1e-26 Score=250.57 Aligned_cols=219 Identities=26% Similarity=0.386 Sum_probs=185.7
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
||+.||+|++|++++||+++++.|.+++++++.++ ++|+||+|+|||++++.+++++.+...
T Consensus 1 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~-lll~Gp~G~GKTtl~~~i~~~l~~~~~----------------- 62 (237)
T d1sxjd2 1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGPDL----------------- 62 (237)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCC-EEEECSTTSSHHHHHHHHHHHHHHHHH-----------------
T ss_pred CcchhhCCCCHHHccCcHHHHHHHHHHHHcCCCCe-EEEECCCCCChHHHHHHHHHHHcCCcc-----------------
Confidence 69999999999999999999999999999999887 899999999999999999999864210
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhc------------CccCCceEEEeccCccCCHHHHHHHHHhhcCCC
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYA------------PINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP 527 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~------------p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~ 527 (1342)
...+..+++.+...+.+.....+...... .....+++++|||++.++....+.|++.++.++
T Consensus 63 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~ 136 (237)
T d1sxjd2 63 ------MKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS 136 (237)
T ss_dssp ------HTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT
T ss_pred ------cccchhheeccccccchHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhcccccc
Confidence 01235566666656655444444332111 123467799999999999999999999999999
Q ss_pred CcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 528 KYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 528 ~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
....+|++++..+++++++++||..++|.+++.+++..+|..++.++++.+++++++.|++.++||+|.+++.|+.+...
T Consensus 137 ~~~~~i~~~~~~~~~~~~l~sr~~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~ai~~L~~~~~~ 216 (237)
T d1sxjd2 137 GVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKG 216 (237)
T ss_dssp TTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHH
T ss_pred ccccccccccccccccccccchhhhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred c-----CCCCCHHHHHHHhc
Q psy13354 608 S-----SEKITLNSMQEMLS 622 (1342)
Q Consensus 608 ~-----~~~It~e~V~~~v~ 622 (1342)
+ ++.||.++|+++++
T Consensus 217 ~~~~~~~~~It~~~i~e~~g 236 (237)
T d1sxjd2 217 AQYLGDGKNITSTQVEELAG 236 (237)
T ss_dssp HHHHCSCCCCCHHHHHHHHT
T ss_pred chhcCCCCccCHHHHHHhhC
Confidence 2 24599999999875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=6.2e-24 Score=250.06 Aligned_cols=317 Identities=16% Similarity=0.139 Sum_probs=244.1
Q ss_pred eeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCccC-CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 30 IELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYYG-GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 30 i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~~-~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
+..++++||++.. ++++..+++. +|+.+..+++.+. ..+.+.++|+ .+++++|.+.+++++ +|+.|+..
T Consensus 40 ~l~f~s~dYLGl~~~p~v~~a~~~a~~-~~G~~~~~sr~~~g~~~~~~~lE~----~LA~~~g~e~al~~~-SG~~an~~ 113 (383)
T d1bs0a_ 40 YLNFSSNDYLGLSHHPQIIRAWQQGAE-QFGIGSGGSGHVSGYSVVHQALEE----ELAEWLGYSRALLFI-SGFAANQA 113 (383)
T ss_dssp EEECSCCCTTSGGGCHHHHHHHHHHHH-HHCSCCCSBTTTTCCCHHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHH
T ss_pred EEEEEcccccccCCCHHHHHHHHHHHH-HhCCCCCccccccCcchHHHHHHH----HHHHhcCCCceEEec-ccchhhHH
Confidence 4568999999875 9999888885 7888888877764 4676777777 899999999888888 99999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC--CeEEEEcCCCCC---c
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK--PKLIIAGASAYS---Q 179 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~--~~liv~~~s~~~---~ 179 (1342)
++.++..++|.|+... ..|.+.....+..+. ..+.++++ |++++++.+.+.. ..+|++ .+.++ .
T Consensus 114 ~i~al~~~~d~v~~d~---~~h~si~~g~~~~~~--~~~~~~hn-----d~~~le~~l~~~~~~~~~vv~-e~v~s~~G~ 182 (383)
T d1bs0a_ 114 VIAAMMAKEDRIAADR---LSHASLLEAASLSPS--QLRRFAHN-----DVTHLARLLASPCPGQQMVVT-EGVFSMDGD 182 (383)
T ss_dssp HHHHHCCTTCEEEEET---TCCHHHHHHHHTSSS--EEEEECTT-----CHHHHHHHHHSCCSSCEEEEE-ESBCTTTCC
T ss_pred HHHhhcCCCceEEeec---cccHHHhhccccCCC--cceEecch-----HHHHHHHHhcccCCCceEEEe-cCCCCCCCc
Confidence 9999999999999544 455555555555555 55666776 8999999887643 344544 33333 6
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCc
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~ 256 (1342)
..|+++|.++|++||+++++||+|+.|.++....- .... ..++++.+++|++ |..||+++++.++++.++....++
T Consensus 183 i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~-g~~Gg~v~~~~~~~~~l~~~~~~~ 261 (383)
T d1bs0a_ 183 SAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF-GVSGAAVLCSSTVADYLLQFARHL 261 (383)
T ss_dssp BCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT-SSCCEEEEECHHHHHHHHHHCHHH
T ss_pred ccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccc-cccccccccchhHHHHHHhhchhh
Confidence 77999999999999999999999999887653110 0011 2478889999999 888999999999999998877888
Q ss_pred cccCCcHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~-~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
.++++.+|..++++.+..+... ...+..++++.++..++.+.|.+.|+.+. +..++++++.+.++..+.++.+.|++
T Consensus 262 ~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~--~~~s~Ii~v~~g~~~~a~~~~~~L~~ 339 (383)
T d1bs0a_ 262 IYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLA--DSCSAIQPLIVGDNSRALQLAEKLRQ 339 (383)
T ss_dssp HSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEEC--SCCSSBCCEEEESHHHHHHHHHHHHH
T ss_pred hhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCccC--CCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 8887777777666555555443 34566778899999999999999999874 35577777777654434456666665
Q ss_pred HCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+||++.+..+|.+|.+ ..++|+++++.+|.+
T Consensus 340 -~Gi~v~~~~~PtVp~g---~~~lRi~~~a~ht~e 370 (383)
T d1bs0a_ 340 -QGCWVTAIRPPTVPAG---TARLRLTLTAAHEMQ 370 (383)
T ss_dssp -TTEECCEECTTSSCTT---CEEECCBCCTTCCHH
T ss_pred -CCceEEEEcCCCCCCC---CceEEEEeCCCCCHH
Confidence 5999999999998876 678999999988853
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=3.3e-24 Score=253.78 Aligned_cols=318 Identities=21% Similarity=0.267 Sum_probs=239.9
Q ss_pred eeeeecCCCCc----HHHHHHHhHHHHhccccCCCCCCccC-CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 30 IELIASENYTS----LAVMEAQGTLLTNKYAEGYPGKRYYG-GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 30 i~l~a~~n~l~----~~v~eal~~~l~~~~~~g~~~~~~~~-~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
+..++++||++ |.+++++.+++. +|+.++.+++... ....+.++|+ .+++++|.+.+++++ ||+.|+..
T Consensus 47 ~l~f~s~dYLGl~~hp~v~~a~~~a~~-~~g~~~~~sr~~~g~~~~~~~lE~----~lA~~~g~e~al~~~-SG~~An~~ 120 (401)
T d1fc4a_ 47 VINFCANNYLGLANHPDLIAAAKAGMD-SHGFGMASVRFICGTQDSHKELEQ----KLAAFLGMEDAILYS-SCFDANGG 120 (401)
T ss_dssp EEECCCSCTTSCTTCHHHHHHHHHHHH-HHCSCCCSCHHHHCCBHHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHT
T ss_pred EEEEEccccccccCCHHHHHHHHHHHH-HhCCCcccceeeccCcHHHHHHHH----HHHHhhcCCceEEec-chhhhhHH
Confidence 44678899975 559999898884 7777777666553 4566666666 899999999888888 99999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHH---hcC-CeEEEEcCCCCC--
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAK---KNK-PKLIIAGASAYS-- 178 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~---~~~-~~liv~~~s~~~-- 178 (1342)
++.++.+++|.|+... ..|.+....+...+. +...++.. |++++++++. +.. ...+++..+.++
T Consensus 121 ~i~~l~~~~d~i~~d~---~~h~s~~~G~~~~~a--~~~~~~~~-----d~~~le~~~~~~~~~~~~~~liv~egv~s~~ 190 (401)
T d1fc4a_ 121 LFETLLGAEDAIISDA---LNHASIIDGVRLCKA--KRYRYANN-----DMQELEARLKEAREAGARHVLIATDGVFSMD 190 (401)
T ss_dssp THHHHCCTTCEEEEET---TCCHHHHHHHHTSCS--EEEEECTT-----CHHHHHHHHHHHHHTTCSSEEEEEESEETTT
T ss_pred HHHHhcCCCcEEEeCC---cchHHHHccccccCc--eEEEEcCC-----ChHHHHHHHHHhhhcccCceEEEEcCCCCCC
Confidence 9999999999999554 444454444455555 44444554 6666666553 222 223334344444
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-----CCCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhc
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-----EYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSA 252 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-----~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~ 252 (1342)
...|+++|.++|++||+++|+||+|+.|.++.. .+.+..+.+|++++|++|.++|+.||+++++.++++.++..
T Consensus 191 G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v~g~~~~~~~l~~~ 270 (401)
T d1fc4a_ 191 GVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQR 270 (401)
T ss_dssp TEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHHHHHHHHH
T ss_pred CchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCcccccCCHHHHHHHHcC
Confidence 566999999999999999999999999887642 12334445799999999999777899999999999999887
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
..++.++++..|..++++.+..+... ..++.++++.++.+++++.+...|+.+. +..++++++.+.+.....++...
T Consensus 271 ~~~~~~s~~l~p~~~~aa~~~l~~~~-~~~~~~~~l~~~~~~~~~~l~~~g~~~~--~~~~pIv~v~~~~~~~a~~~~~~ 347 (401)
T d1fc4a_ 271 SRPYLFSNSLAPAIVAASIKVLEMVE-AGSELRDRLWANARQFREQMSAAGFTLA--GADHAIIPVMLGDAVVAQKFARE 347 (401)
T ss_dssp CHHHHHSCCCCHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHTTCCBC--CSSSSEEEEEEECHHHHHHHHHH
T ss_pred ChhhhhcCCCCHHHHHHHHhhhcccc-cCHHHHHHHHHHHHHHHhhhcccCCccC--CCCCCEEEEEECCHHHHHHHHHH
Confidence 77777888777777766666666554 3456789999999999999999998763 35678888888765544566666
Q ss_pred HHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
|++ +||++.+..+|.+|.+ ..++|+++++.+|.+
T Consensus 348 L~~-~Gi~v~~i~~PtVp~g---~~~lRi~~~a~hT~e 381 (401)
T d1fc4a_ 348 LQK-EGIYVTGFFYPVVPKG---QARIRTQMSAAHTPE 381 (401)
T ss_dssp HHH-TTEECCEECTTSSCTT---CEEEEEECCTTCCHH
T ss_pred HHH-CCceEEeECCCCCCCC---CceEEEEECCCCCHH
Confidence 665 5999999999998876 678999999988853
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=4.1e-24 Score=237.41 Aligned_cols=227 Identities=22% Similarity=0.267 Sum_probs=166.6
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchh
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~ 460 (1342)
|..||+|++|++++||+.+++.|.+.+.+++..+++|||||+|+|||++|+.+++++.+.............+..+....
T Consensus 1 W~eky~P~~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (252)
T d1sxje2 1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL 80 (252)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred CCcccCCCCHHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchh
Confidence 78999999999999999999999999998887778999999999999999999999864322111111111111122222
Q ss_pred hhccCCCccEEEEccCC--CcCHHHHHHHHHHHh----------hcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCC
Q psy13354 461 KIDNGCFMDYIEMDAAS--TRGINEMAQLLEQTI----------YAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPK 528 (1342)
Q Consensus 461 ~~~~~~~~d~~~i~~~~--~~~~~~i~~ii~~~~----------~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~ 528 (1342)
.+..........+.... ........+.+.... .....+..++++|||+|.++.+.++.|++.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~~~ 160 (252)
T d1sxje2 81 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 160 (252)
T ss_dssp --CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred hhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccchhhhcccccccc
Confidence 22221122233332221 112222333332221 112245678999999999999999999999999999
Q ss_pred cEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 529 YIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFE-TSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 529 ~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~-~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
++.||++|+..++++++|+|||..++|.+++.+++.+++..+++++++.++ +++++.|+..++||+|.+++.|+.+...
T Consensus 161 ~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~Gd~R~ai~~Lq~~~~~ 240 (252)
T d1sxje2 161 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN 240 (252)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHT
T ss_pred cccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999875 7888999999999999999999876654
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=5.3e-23 Score=243.03 Aligned_cols=344 Identities=16% Similarity=0.118 Sum_probs=232.4
Q ss_pred CccccccccccchHH----HHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHH
Q psy13354 1 MIIKNENLSKIDPKI----WEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLI 74 (1342)
Q Consensus 1 m~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~L 74 (1342)
|...+.+++.+.|.. .+...+...+..+.|+|..+++. .|+.+++++.+++.+.. ..|+...+..+|
T Consensus 1 ~~~~~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~-------~~Y~~~~G~~~l 73 (382)
T d1b5pa_ 1 MRGLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGK-------TKYAPPAGIPEL 73 (382)
T ss_dssp CCCCCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-------CSCCCTTCCHHH
T ss_pred ChHHHHHHHhCCCCHHHHHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCC-------cCCCCCCCCHHH
Confidence 433445555554332 22222322333466889888753 45569999888875321 124555666799
Q ss_pred HHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCC
Q psy13354 75 EKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKE 151 (1342)
Q Consensus 75 e~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~ 151 (1342)
++++++++.+..|.+ +.+++++|+++|+..++.+++++||.|++..+.++.+ ...+...|..+..++...++++
T Consensus 74 R~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~---~~~~~~~g~~~~~v~~~~~~~~ 150 (382)
T d1b5pa_ 74 REALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSY---PEMVRFAGGVVVEVETLPEEGF 150 (382)
T ss_dssp HHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHH---HHHHHHTTCEEEEEECCGGGTT
T ss_pred HHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHH---HHHHHHhcCeEEEEeccccccc
Confidence 998888888877754 4555554778899999999999999999887655544 4445666774444433323557
Q ss_pred CCCHHHHHHHHHhcCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC---CCcEE
Q psy13354 152 KIDYKKVEYLAKKNKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP---FADFI 223 (1342)
Q Consensus 152 ~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~---~~Div 223 (1342)
.+|++++++.+++ +++++++++++|| ...++++|+++|++||++||+||+|....+.. ....+.. ...++
T Consensus 151 ~~d~~~l~~~~~~-~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~i~ 228 (382)
T d1b5pa_ 151 VPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAPEHTLT 228 (382)
T ss_dssp CCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCTTTEEE
T ss_pred CCCHHHHHHhCCC-CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCC-CCCCHHHcCCCCEEE
Confidence 8899999988765 4566666666777 33368999999999999999999998655433 2222221 23588
Q ss_pred EecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFK--EVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~--~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
++|+||.| +.+| ||+++++++++.+.........+ ++.+.+.++..++. .....+....++.+.++++.+.+.
T Consensus 229 ~~s~SK~~-~~~GlR~G~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (382)
T d1b5pa_ 229 VNGAAKAF-AMTGWRIGYACGPKEVIKAMASVSRQSTTS-PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEG 306 (382)
T ss_dssp EEESTTTT-TCGGGCCEEEECCHHHHHHHHHHHHTTTCS-CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Eecchhhc-cCcHhheEEEEECHHHHHHHHHHHHhcccC-cccccccccccccccccchhHHHHHHHHHHHhhhhHHHHH
Confidence 89999999 6666 99999999888776543333333 33434333333322 222335566677788888899999
Q ss_pred HHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 299 LDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 299 L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+...|+.+. .+.+++++|+++++...+...+..++.++||.+.|+..++. .+++|++++.
T Consensus 307 l~~~g~~~~-~p~gg~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~------~~~iRis~~~ 366 (382)
T d1b5pa_ 307 LTALGLKAV-RPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAA------FGHVRLSYAT 366 (382)
T ss_dssp HHHHTCCBC-CCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTC------TTEEEEECCS
T ss_pred HhhcCCeEe-cCCceEEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccCC------CCeEEEEEcC
Confidence 988888764 46788999999987666666666666677999999876653 3479999864
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.91 E-value=2.5e-23 Score=246.37 Aligned_cols=327 Identities=14% Similarity=0.092 Sum_probs=227.9
Q ss_pred HHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEe
Q psy13354 21 KEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQ 94 (1342)
Q Consensus 21 ~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~ 94 (1342)
+.....++.|+|..|++. .|+.+++++.+++.+.. ..|+...+..+|++++++++....+.. ..+++
T Consensus 19 ~~~~~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~-------~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~ 91 (388)
T d1gdea_ 19 DIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGL-------THYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMV 91 (388)
T ss_dssp HHHHHCTTCEECCCCSCCSCCCHHHHHHHHHHHHTTC-------CSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEE
T ss_pred HHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCc-------cCCCCCcCCHHHHHHHHHHHHhhccccCCChheeee
Confidence 334445677899888743 34558999888875321 124555566789998888887765542 34566
Q ss_pred cCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC
Q psy13354 95 PHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA 174 (1342)
Q Consensus 95 ~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~ 174 (1342)
++|+++++..++.++++|||+|++..+.|+.+ ...+...|..+..++...++++.+|++++++.+++ +++++++++
T Consensus 92 t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~---~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~~~~ 167 (388)
T d1gdea_ 92 LLGANQAFLMGLSAFLKDGEEVLIPTPAFVSY---APAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD-KTRALIINS 167 (388)
T ss_dssp ESSTTHHHHHHHTTTCCTTCEEEEEESCCTTH---HHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT-TEEEEEEES
T ss_pred ccCcchHHHHHHHHhcCCCCEEEECCCCcHHH---HHHHHHcCCEEEEeecccccCCCCCHHHHHHhCcc-CCeEEEECC
Confidence 65888899999999999999999888666544 44445667644444333335678999999998875 456666767
Q ss_pred CCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEE
Q psy13354 175 SAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILM 241 (1342)
Q Consensus 175 s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~ 241 (1342)
++|| +..++++|+++|++||++||+||+|....+....+.+... ...++++|+||.| |.+| ||+++
T Consensus 168 P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~ii~ 246 (388)
T d1gdea_ 168 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTF-AMTGWRLGFVAA 246 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTT-TCGGGCCEEEEC
T ss_pred CcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhc-cCccccEEEEEe
Confidence 6776 3336899999999999999999999865544333322221 1248899999999 6666 99999
Q ss_pred echhHHHHhhccCCccccCCcHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEc
Q psy13354 242 KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-LKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 242 ~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~ 320 (1342)
++++.+.+......... ++..+.+.+++.++... .........+.+.+++..+.+.|...++... .+.+++++|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~p~gg~fl~~~l 324 (388)
T d1gdea_ 247 PSWIIERMVKFQMYNAT-CPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTV-KPKGAFYIFPRI 324 (388)
T ss_dssp CHHHHHHHHHHHHTTTC-SCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-CCCBTTEECCBC
T ss_pred eccchhhhhhccccccc-cccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhcccccc-CCCceEEEEEEC
Confidence 99888777664333333 33344555444444321 1224566677888888999999998887764 357789999999
Q ss_pred cCCCC-CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 321 RNKKI-TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 321 ~~~~~-~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++... +.+++..+++++||.+.|+..++... ++++|++++.
T Consensus 325 ~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~----~~~iRis~~~ 366 (388)
T d1gdea_ 325 RDTGLTSKKFSELMLKEARVAVVPGSAFGKAG----EGYVRISYAT 366 (388)
T ss_dssp GGGTCCHHHHHHHHHHHTCEECEEGGGGCGGG----TTBEEEECCS
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEechhhCCCC----CCEEEEEecC
Confidence 86543 45778888888999999987665332 4679999874
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.90 E-value=5.2e-23 Score=243.51 Aligned_cols=317 Identities=11% Similarity=0.069 Sum_probs=225.7
Q ss_pred cCceeeeecCCC-C-cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY-T-SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~-l-~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.|+|..|++. . |+.+++++.+++.+.. ..|+...+..++++++++++.+.+|.. +.+++++|+++|
T Consensus 30 ~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~-------~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~a 102 (388)
T d1j32a_ 30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQGK-------TRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQS 102 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-------CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHH
Confidence 466888877643 3 3558999888875321 225555667789999999998888765 445556477889
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC---
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--- 178 (1342)
+..++.++++|||+|+++.+.|+.+ ...+...|.....++...++++.+|++++++.+++ +++++++++|+||
T Consensus 103 l~~~~~~~~~~gd~Vlv~~P~y~~~---~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~-~~~~~~~~~P~NPTG~ 178 (388)
T d1j32a_ 103 IFNLMLAMIEPGDEVIIPAPFWVSY---PEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP-KTKLLVFNTPSNPTGM 178 (388)
T ss_dssp HHHHHHHHCCTTCEEEEESSCCTHH---HHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHH---HHHHHHhcCeEEEEecccccccCCCHHHHHHhCCC-CCeEEEECCCCCCCCc
Confidence 9999999999999999877555443 44455666633333333335578999999998875 4455566566666
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC------CcEEEecCCccCCCCCe---eEEEEechhHH
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF------ADFITSTTHKSLRGPRG---GFILMKKKYKK 247 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~------~Divv~S~sK~l~gp~G---G~iv~~~~l~~ 247 (1342)
+...+++|+++|+++|++||+||+|....+....+.+.... ..+++.|+||.| +.+| ||+++++++++
T Consensus 179 ~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~-~~~GlRvG~~~~~~~~~~ 257 (388)
T d1j32a_ 179 VYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGPVPLVK 257 (388)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECCHHHHH
T ss_pred ccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhh-hcchhHeEEEEECHHHHH
Confidence 33368999999999999999999997665544433332211 247899999999 6566 99999999888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCC-
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKI- 325 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~- 325 (1342)
.+....... ..++....+.++...+. ...+++++.++.+.++++.+.+.|.+. |+.+. .+.+++++|++++....
T Consensus 258 ~~~~~~~~~-~~~~~~~~q~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~-~p~gg~~l~~~l~~~~~~ 334 (388)
T d1j32a_ 258 AATKIQGHS-TSNVCTFAQYGAIAAYE-NSQDCVQEMLAAFAERRRYMLDALNAMPGLECP-KPDGAFYMFPSIAKTGRS 334 (388)
T ss_dssp HHHHHHHTT-TCSCCHHHHHHHHHHHH-SCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCC-CCCBTTEECCBCGGGTCC
T ss_pred HHHHhhhhc-cccccHHHHHHHhhccc-chHHHHHHHHHHHHHHHHHHHHHHHhCCCCEec-CCCceEEEEEECCCCCCC
Confidence 776533222 23344555555444433 334578888999999999999999886 66653 46778999999876543
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+.+++..+++++||.+.|+..++. ++++|++++
T Consensus 335 ~~~~~~~ll~~~gV~v~pG~~F~~------~~~~Rls~~ 367 (388)
T d1j32a_ 335 SLDFCSELLDQHQVATVPGAAFGA------DDCIRLSYA 367 (388)
T ss_dssp HHHHHHHHHHHHCEECEEGGGGTC------TTBEEEECC
T ss_pred HHHHHHHHHHhCCEEEEeccccCC------CCeEEEEEe
Confidence 457788888888999999877653 357999986
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.87 E-value=1.6e-21 Score=231.29 Aligned_cols=318 Identities=14% Similarity=0.111 Sum_probs=216.3
Q ss_pred cCceeeeecC-CCC-cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASE-NYT-SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~-n~l-~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.|+|..++ ++. |+.+++|+.+++.+. ..+|+ .+..+|++++++++++.+|.+ +.+++++|+++|
T Consensus 31 ~~vi~l~~g~pdf~~p~~v~~al~~~~~~~-~~~Y~--------~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~a 101 (394)
T d1c7na_ 31 NEVVPLSVADMEFKNPPELIEGLKKYLDET-VLGYT--------GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPA 101 (394)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHHC-CCSSB--------CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhCC-CcCCC--------CCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhh
Confidence 3568887776 444 455999998888532 12221 223589999999999888865 455556589999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC---CCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL---NKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~---~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
+..++.++++|||+|++.++.+. .........|. ..+.++. +..+.+|.+.++.++...+++++++++++||
T Consensus 102 l~~~~~~~~~pgd~vi~~~p~~~---~~~~~~~~~g~--~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NP 176 (394)
T d1c7na_ 102 VFNAVREFTKPGDGVIIITPVYY---PFFMAIKNQER--KIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNP 176 (394)
T ss_dssp HHHHHHHHCCTTCEEEECSSCCT---HHHHHHHTTTC--EEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTT
T ss_pred hhhhhccccccccccccccCccc---chhhHHhhhhh--cccccccccccccccchhhhhhhhhccccceEEEecccccc
Confidence 99999999999999997765443 33444455555 4444443 3456789999998887666778888888888
Q ss_pred -----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC------CCcEEEecCCccCCCCCe---eEEEEec-
Q psy13354 179 -----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP------FADFITSTTHKSLRGPRG---GFILMKK- 243 (1342)
Q Consensus 179 -----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~------~~Divv~S~sK~l~gp~G---G~iv~~~- 243 (1342)
+..++++|+++|++||++||+||+|....+....+..... ...+++.|+||.+ +..| |++++++
T Consensus 177 TG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~R~g~~~~~~~ 255 (394)
T d1c7na_ 177 VGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF-NIAGMGMSNIIIKNP 255 (394)
T ss_dssp TTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH-TCGGGCCEEEECCCH
T ss_pred cceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccc-cccccccccccccCh
Confidence 3336889999999999999999999866554333332221 1247889999998 6666 7777766
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEEcc
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVDLR 321 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~~~ 321 (1342)
.+.+.+.........+.. .....+++.........+.+++.+.+.++++.+.+.++.. ++.+. .+.+++++|++++
T Consensus 256 ~i~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~p~g~~~~~~~~~ 333 (394)
T d1c7na_ 256 DIRERFTKSRDATSGMPF-TTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP-LIEGTYLQWIDFR 333 (394)
T ss_dssp HHHHHHHHHHHHTTCCCC-CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC-CCSBSSEEEEECG
T ss_pred hhhhhhhhhhhhcccccc-ccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeec-CCCceeEEEEECC
Confidence 454555443222222222 2333333333333334467777888888888888888764 45432 3567899999998
Q ss_pred CCC-CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 322 NKK-ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 322 ~~~-~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
... .+.+++..+++++||.+.|+..++... ++++|++++.
T Consensus 334 ~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~----~~~iRis~~~ 374 (394)
T d1c7na_ 334 ALKMDHKAMEEFMIHKAQIFFDEGYIFGDGG----IGFERINLAA 374 (394)
T ss_dssp GGCCCHHHHHHHHHHTTCCCCEEGGGGCGGG----TTEEEEECCS
T ss_pred CCCCCHHHHHHHHHHhCCEEEEcchhhCCCC----CCEEEEEEeC
Confidence 744 455778888998999999987775432 4679999864
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.87 E-value=3.5e-21 Score=230.11 Aligned_cols=349 Identities=12% Similarity=0.056 Sum_probs=242.9
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRL 82 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~l 82 (1342)
..++....+.++..+.+...+ .+.|+|..|+.. .|+.+++++.+++.+.- .....|+...+..++++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~----~~~~~Y~~~~G~~~lReaiA~~~ 79 (418)
T d2r5ea1 5 PKRYQGSTKSVWVEYIQLAAQ-YKPLNLGQGFPDYHAPKYALNALAAAANSPD----PLANQYTRGFGHPRLVQALSKLY 79 (418)
T ss_dssp CGGGTTCCCCHHHHHHHHHHH-HCCEECSSSCCSSCCCHHHHHHHHHHHTCSC----GGGGSCCCTTCCHHHHHHHHHHH
T ss_pred hhhhcCCCCCHHHHHHHHhcC-CCCEEccCCCCCCCCCHHHHHHHHHHHhCCC----ccCcCCCCCCCCHHHHHHHHHHH
Confidence 446666677777777655433 356888887643 33459999888874221 11123556667779999999999
Q ss_pred HHHhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--------C
Q psy13354 83 KKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--------K 150 (1342)
Q Consensus 83 a~~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--------~ 150 (1342)
.+.+|.+ +.+++++|+++|+..++.++++|||.|+++.+.++.+ .......|.....+++..+. .
T Consensus 80 ~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~~~~~~ 156 (418)
T d2r5ea1 80 SQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCY---EPMVKAAGGIPRFIPLKPNKTGGTISSAD 156 (418)
T ss_dssp HHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTH---HHHHHHTTCEEEEEECEESCCSSCEEGGG
T ss_pred HHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchh---hHHHHHcCCeEEEEEecccccccchhhhh
Confidence 9988754 3455564778899999999999999999888665544 44456667755555544321 2
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-----C
Q psy13354 151 EKIDYKKVEYLAKKNKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-----A 220 (1342)
Q Consensus 151 ~~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-----~ 220 (1342)
+.++++.+...... .++++++++++|| ....+++|+++|++||++||+|++|....+......+.... .
T Consensus 157 ~~~~~~~~~~~~~~-~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~ 235 (418)
T d2r5ea1 157 WVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWER 235 (418)
T ss_dssp EECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGG
T ss_pred hhhhHHHHhhhhhc-cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccce
Confidence 56788888776543 5667777777777 33368899999999999999999997765543333322221 2
Q ss_pred cEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHh------ccchHHHHHHHHHHH
Q psy13354 221 DFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV------LKPDFKIYQKQVVKN 291 (1342)
Q Consensus 221 Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~------l~~~~~~~~~~l~~~ 291 (1342)
.+++.|+||.+ +.+| ||+++++++++.+.........++ .++.+.+++..+... ...+++..++.+..+
T Consensus 236 ~i~~~S~SK~~-~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 313 (418)
T d2r5ea1 236 TITIGSAGKTF-SLTGWKIGWAYGPEALLKNLQMVHQNCVYTC-ATPIQEAIAVGFETELKRLKSPECYFNSISGELMAK 313 (418)
T ss_dssp EEEEEEHHHHT-TCGGGCCEEEESCHHHHHHHHHHHTTTTCSC-CHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHH
T ss_pred eeeeecCCccc-cCCCcccccccccchhhhhhhhccccccccc-ccchhhhccccccccccccccchhhHHHHHHHHHHh
Confidence 47789999999 6667 999999999888876443333333 355555554444322 234677888999999
Q ss_pred HHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC------------CCCHHHHHHHHHHCCceeeeccCCCCCCC-cccccc
Q psy13354 292 AKILSKILDQRGIRIVSGGTKSHIILVDLRNK------------KITGKIAESILESANIICNKNSIPNDPEK-PYFTSG 358 (1342)
Q Consensus 292 a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~------------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~-~~~~~~ 358 (1342)
++.+.+.|++.|+.+.. |.+++++|++++.. ..+.+++..+++++||.+.|+..++.... ..+.++
T Consensus 314 r~~l~~~L~~~g~~~~~-P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~ 392 (418)
T d2r5ea1 314 RDYMASFLAEVGMNPTV-PQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDF 392 (418)
T ss_dssp HHHHHHHHHHTTCEEEE-CSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTE
T ss_pred hhhHHhhHhhcCCcccC-CCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCE
Confidence 99999999999998755 67899999998631 23457888899989999998866554321 112467
Q ss_pred ccccccc
Q psy13354 359 IRLGSSA 365 (1342)
Q Consensus 359 lRi~~~~ 365 (1342)
+|++++.
T Consensus 393 iRis~~~ 399 (418)
T d2r5ea1 393 VRYCFFK 399 (418)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9999853
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.87 E-value=3.7e-21 Score=228.02 Aligned_cols=323 Identities=14% Similarity=0.094 Sum_probs=223.6
Q ss_pred hccCceeeeecC----CC-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecC
Q psy13354 25 RQNNNIELIASE----NY-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPH 96 (1342)
Q Consensus 25 ~~~~~i~l~a~~----n~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~ 96 (1342)
+..+.|+|..|+ ++ .|+.+++++.+++.+.. ..|+...+..+|++++++++.+.+|.+ +.+++++
T Consensus 28 ~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~-------~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~ 100 (395)
T d1xi9a_ 28 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-------NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTA 100 (395)
T ss_dssp TTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-------CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred CCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHHHHHhhhhccccccccccccccc
Confidence 345668888776 33 34459999888885311 235566677799999999999988875 4455554
Q ss_pred CHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCC
Q psy13354 97 SGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASA 176 (1342)
Q Consensus 97 sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~ 176 (1342)
++++++..++.+++.+||+|+++++.++. +.......|..+..++....+++.+|++++++.+.+ +++++++++|+
T Consensus 101 G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~---~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~-~~~~v~l~~P~ 176 (395)
T d1xi9a_ 101 AVTEALQLIFGALLDPGDEILVPGPSYPP---YTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD-RTKAIAVINPN 176 (395)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCHH---HHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT-TEEEEEEESSC
T ss_pred ccchhhhhhhhhhcCCCCEEEEcCCcccc---chhhhhhcCCEEEEEeccccccccchHHHHHHhhcc-cccEEEecCCC
Confidence 77889999999999999999988855543 444556777755555544456788999999988865 44556666666
Q ss_pred CC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--C--CCcEEEecCCccCCCCCe---eEEEEec-
Q psy13354 177 YS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--P--FADFITSTTHKSLRGPRG---GFILMKK- 243 (1342)
Q Consensus 177 ~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~--~~Divv~S~sK~l~gp~G---G~iv~~~- 243 (1342)
|| ....+++|+++|++||++||+|++|....+.. ....+. . ...++++|+||.+ +.+| ||+++..
T Consensus 177 NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~-~~~GlRvG~~~~~~~ 254 (395)
T d1xi9a_ 177 NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EHISPGSLTKDVPVIVMNGLSKVY-FATGWRLGYMYFVDP 254 (395)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CCCCHHHHCSSSCEEEEEESTTTT-CCGGGCCEEEEEECT
T ss_pred CCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccc-cccchhhcCCCCCEEEEeCcchhc-ccchhhcEeeEecCH
Confidence 66 33368999999999999999999987654422 222111 1 1247889999999 6556 9887653
Q ss_pred -hhHHHHhhcc--CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEc
Q psy13354 244 -KYKKIINSAV--FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 244 -~l~~~l~~~~--~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~ 320 (1342)
..+..+.... ......+++.+.+.++..++.. ..+++++.++.+.++++.+.+.|.+.+......+.+++++|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l 333 (395)
T d1xi9a_ 255 ENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTG-PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKI 333 (395)
T ss_dssp TCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEE
T ss_pred HHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEEEeEEC
Confidence 2222222111 0111223344556655555443 34588888999999999999999998754445567799999998
Q ss_pred cCC--CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 321 RNK--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 321 ~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.. .++.+++..+++++||.+.|+..++... ++++|++++.
T Consensus 334 ~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~----~~~~Ris~~~ 376 (395)
T d1xi9a_ 334 EVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYG----AGHFRAVFLP 376 (395)
T ss_dssp CSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGG----TTBEEEECCS
T ss_pred CCCCCCCHHHHHHHHHHhCCEEEEcChhhCCCC----CCEEEEEecC
Confidence 753 3456788999999999999987665432 4679999853
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=4.2e-21 Score=211.06 Aligned_cols=203 Identities=23% Similarity=0.343 Sum_probs=169.8
Q ss_pred cCCCCccccccchhhHHHHHHHHH----cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchh
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALD----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~----~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~ 460 (1342)
.||++|++++||+++++.|..++. .++..+++|||||||||||++|+++++++++
T Consensus 3 ~RP~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~--------------------- 61 (238)
T d1in4a2 3 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT--------------------- 61 (238)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC---------------------
T ss_pred CCCCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCC---------------------
Confidence 589999999999999999988874 4555566999999999999999999999984
Q ss_pred hhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcC---------------
Q psy13354 461 KIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEE--------------- 525 (1342)
Q Consensus 461 ~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~--------------- 525 (1342)
++..+++.......++..++.. .....++++||++.+.....+.|+..++.
T Consensus 62 --------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 127 (238)
T d1in4a2 62 --------NIHVTSGPVLVKQGDMAAILTS------LERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKS 127 (238)
T ss_dssp --------CEEEEETTTCCSHHHHHHHHHH------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC----------
T ss_pred --------CcccccCcccccHHHHHHHHHh------hccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccc
Confidence 3566677666666666665543 24557999999999998888888777664
Q ss_pred ---CCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHH
Q psy13354 526 ---PPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLT 601 (1342)
Q Consensus 526 ---p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L 601 (1342)
+..++++|++|+.+.+..+++++|| ..+.|.+++.+++..+++..+..++..+++++++.+++.++||+|.+++.|
T Consensus 128 ~~~~~~~~~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~gd~R~ai~~l 207 (238)
T d1in4a2 128 IRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT 207 (238)
T ss_dssp -----CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred cccCCCCeEEEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCCCHHHHHHHH
Confidence 2357789999999999999999998 678999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh----cCCCCCHHHHHHHhc
Q psy13354 602 DQAINY----SSEKITLNSMQEMLS 622 (1342)
Q Consensus 602 ~kl~~~----~~~~It~e~V~~~v~ 622 (1342)
+.+... ..+.||.+.+.+++.
T Consensus 208 ~~~~~~~~~~~~~~it~~~~~~al~ 232 (238)
T d1in4a2 208 KRVRDMLTVVKADRINTDIVLKTME 232 (238)
T ss_dssp HHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccCHHHHHHHHH
Confidence 876533 245699888887763
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.7e-20 Score=221.20 Aligned_cols=342 Identities=12% Similarity=0.123 Sum_probs=246.2
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCC-C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASEN-Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRL 82 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n-~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~l 82 (1342)
.++|..+...+...+...++. .+.|+|..|.. + .|+.+.+++.+.+.+. . ..|+...+..+|++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~a~~-~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~-~------~~Y~~~~G~~~LReaia~~~ 76 (382)
T d1u08a_ 5 QSKLPQLGTTIFTQMSALAQQ-HQAINLSQGFPDFDGPRYLQERLAHHVAQG-A------NQYAPMTGVQALREAIAQKT 76 (382)
T ss_dssp CCSCCCCCCCHHHHHHHHHHH-TTCEECCCSSCSSCCCHHHHHHHHHHHHTT-C------CSCCCTTCCHHHHHHHHHHH
T ss_pred hhhCCCCCCcHHHHHHHHhcc-CCCEEccCCCCCCCCCHHHHHHHHHHHhcC-C------CCCCCCcCCHHHHHHHHHHH
Confidence 456777777777777766544 46689988874 3 3344888888887532 1 23555666779999999999
Q ss_pred HHHhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHH
Q psy13354 83 KKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKV 158 (1342)
Q Consensus 83 a~~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~L 158 (1342)
.+.+|.+ ..+++++|+++|+..++++++++||.|++.++.++. ........|....+++.+ +..+.+|++++
T Consensus 77 ~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~---~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l 152 (382)
T d1u08a_ 77 ERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDS---YAPAIALSGGIVKRMALQ-PPHFRVDWQEF 152 (382)
T ss_dssp HHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTT---HHHHHHHTTCEEEEEECC-TTTCCCCHHHH
T ss_pred HHHhCCCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccc---hhhhhhhccccceecccc-cccccCCHHHH
Confidence 9988864 335666588889999999999999999988765544 344556666644444332 35567899999
Q ss_pred HHHHHhcCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-----CcEEEecCC
Q psy13354 159 EYLAKKNKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-----ADFITSTTH 228 (1342)
Q Consensus 159 e~~i~~~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-----~Divv~S~s 228 (1342)
++.+.+ +++++++++++|| ....+++|+++|.+++++++.|+++....+........... ..+++.|+|
T Consensus 153 ~~~~~~-~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S 231 (382)
T d1u08a_ 153 AALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFG 231 (382)
T ss_dssp HHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHH
T ss_pred hhhhcc-CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeecc
Confidence 988776 4556666666666 22367899999999999999999987654433332222211 248899999
Q ss_pred ccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcE
Q psy13354 229 KSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIR 305 (1342)
Q Consensus 229 K~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~ 305 (1342)
|.+ +..| ||+++++++++.+..... ....+++.+.+.+++.++... .++....++.+.++++.+.+.+...|+.
T Consensus 232 K~~-~~pG~RiG~~v~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 308 (382)
T d1u08a_ 232 KTY-HMTGWKVGYCVAPAPISAEIRKVHQ-YLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRLE 308 (382)
T ss_dssp HHT-TCGGGCCEEEECCHHHHHHHHHHHH-HHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSCE
T ss_pred ccc-cCCcccchhhhccchhHHHHHhhhc-ccccccccccccccccccccc-hHHHHHHHHHHHhhhhhhhhhhccCCcE
Confidence 999 6666 999999988887765322 223345566777776666544 4578888999999999999999888988
Q ss_pred EeeCCCCCeEEEEEccCC--CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 306 IVSGGTKSHIILVDLRNK--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 306 ~~~~~~~~~~v~i~~~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.. +.+++++|++++.. .++.+++.++++++||.+.|+..++.... +.+++|++++.
T Consensus 309 ~~~-p~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~--~~~~~Ris~~~ 367 (382)
T d1u08a_ 309 ILP-CEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPF--PHKLIRLCFAK 367 (382)
T ss_dssp ECC-CCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCC--CSCEEEEECCS
T ss_pred Eec-CCceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCC--CCCEEEEEEeC
Confidence 754 67889999999863 34567888999999999999877665321 24679999863
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=1.6e-21 Score=216.53 Aligned_cols=211 Identities=18% Similarity=0.297 Sum_probs=158.7
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc----------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK----------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~----------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~ 443 (1342)
-|..||+|++|++++|++++++.|.++++. ....+++|||||||+|||++|+++|+++++
T Consensus 3 lW~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~---- 78 (253)
T d1sxja2 3 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY---- 78 (253)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC----
T ss_pred ccccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHh----
Confidence 388999999999999999999999998853 123357999999999999999999999974
Q ss_pred CCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHH--------------hhcCccCCceEEEeccCc
Q psy13354 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQT--------------IYAPINARYKIYVIDEVH 509 (1342)
Q Consensus 444 ~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~--------------~~~p~~~~~rvviIDE~~ 509 (1342)
++..++.+...+...++..+... ...+..+...++++||++
T Consensus 79 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~ 133 (253)
T d1sxja2 79 -------------------------DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVD 133 (253)
T ss_dssp -------------------------EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGG
T ss_pred -------------------------hhhccccccchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeecc
Confidence 34455554444333333322211 122344567799999999
Q ss_pred cCCHHHHH---HHHHhhcCCCCcEEEEEEeC-CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHH
Q psy13354 510 MLTHHAFN---AMLKTLEEPPKYIKFILATT-EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNL 585 (1342)
Q Consensus 510 ~L~~~~~~---~Ll~~Le~p~~~~vlIl~t~-~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~ 585 (1342)
.+...... .+.+..+..... ++++++ ...+....+++||..++|.+++.+++..++..++.++|+.+++++++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~--ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~ 211 (253)
T d1sxja2 134 GMSGGDRGGVGQLAQFCRKTSTP--LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDR 211 (253)
T ss_dssp GCCTTSTTHHHHHHHHHHHCSSC--EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHH
T ss_pred ccccchhhhhHHHhhhhcccccc--cccccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 88765433 444444443333 344443 444566789999999999999999999999999999999999999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhc
Q psy13354 586 IATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLS 622 (1342)
Q Consensus 586 La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~ 622 (1342)
|++.++||+|.+++.|+.+.. ..+.++.++|.++..
T Consensus 212 i~~~s~GDiR~ai~~L~~~~~-~~~~i~~~~~~~~~~ 247 (253)
T d1sxja2 212 LIQTTRGDIRQVINLLSTIST-TTKTINHENINEISK 247 (253)
T ss_dssp HHHHTTTCHHHHHHHHTHHHH-HSSCCCTTHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHH-cCCCCCHHHHHHHhc
Confidence 999999999999999976554 356688887776653
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=3.5e-20 Score=216.87 Aligned_cols=317 Identities=10% Similarity=0.058 Sum_probs=212.5
Q ss_pred eeeeecC-CCCc-HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHH
Q psy13354 30 IELIASE-NYTS-LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQA 104 (1342)
Q Consensus 30 i~l~a~~-n~l~-~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~ 104 (1342)
|+|..++ |+.+ +.+.+|+.+++.+.. .+ |....+ .++++++++++++.+|.+ +.+++++|+++|+..
T Consensus 2 ~~~~~~~~df~~p~~i~eal~~~~~~~~-~~------Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~ 73 (361)
T d1d2fa_ 2 LPFTISDMDFATAPCIIEALNQRLMHGV-FG------YSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSE 73 (361)
T ss_dssp EECCSSSCSSCCCHHHHHHHHHHHTTCC-CC------CCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHH
T ss_pred cCcCCCCCCCCCCHHHHHHHHHHHhCCC-CC------CCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHH
Confidence 4555554 5544 459999888874321 12 333333 368888888998888865 455666599999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS----- 178 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~----- 178 (1342)
++.++++|||+|+++.+.++.+ .......|..+..++.... +++.+|++.+++.+.+.+++++++++++||
T Consensus 74 ~~~~l~~~gd~Vlv~~P~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~ 150 (361)
T d1d2fa_ 74 LIRQWSETGEGVVIHTPAYDAF---YKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVW 150 (361)
T ss_dssp HHHHSSCTTCEEEEEESCCHHH---HHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCC
T ss_pred Hhhhccccccccccccccccch---hHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEeccccccccccc
Confidence 9999999999999888665544 4445566765555544433 556799999999998777888888787777
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC---CcEEEecCCccCCCCCe---eEEEEech-h-HHHHh
Q psy13354 179 QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF---ADFITSTTHKSLRGPRG---GFILMKKK-Y-KKIIN 250 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~---~Divv~S~sK~l~gp~G---G~iv~~~~-l-~~~l~ 250 (1342)
....+++|+++|+++|++||+|++|....+........... ..+++.|+||.+ +..| ||++.... . ...+.
T Consensus 151 s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~-~~~g~R~g~~~~~~~~~~~~~~~ 229 (361)
T d1d2fa_ 151 TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSF-NIPALTGAYGIIENSSSRDAYLS 229 (361)
T ss_dssp CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHH-TCGGGCCEEEEECSHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhheeeeeccccccccccccccccccccccccccccccccccc-ccccccceeeecchhHHHHHHhh
Confidence 33358999999999999999999997654433222211111 247788999988 4444 98877652 2 22222
Q ss_pred hccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEEccCCC-CCH
Q psy13354 251 SAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVDLRNKK-ITG 327 (1342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~~~~~~-~~~ 327 (1342)
........+++....+.++..+ ......+.+..+..+.++++.+.+.+... ++.+. .+.+++++|++++... ++.
T Consensus 230 ~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~p~gg~~~~~~l~~~~~~~~ 307 (361)
T d1d2fa_ 230 ALKGRDGLSSPSVLALTAHIAA-YQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQ-IPQSTYLAWLDLRPLNIDDN 307 (361)
T ss_dssp HHHTTSCCCSCCHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCC-CCSBCSEEEEECGGGCCCHH
T ss_pred hcccccccccchhhhHHHHHHH-hhccchhhhcccccchhhHHHHHHHhhhhccccccc-ccCceeEEEEEccCCCCCHH
Confidence 2222333334444444443333 33334467777788888888888877663 44443 3566889999986543 456
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+++.++++++||.+.|+..++... .+++|+++.
T Consensus 308 ~~~~~Ll~~~gv~v~pG~~F~~~~----~~~vRis~~ 340 (361)
T d1d2fa_ 308 ALQKALIEQEKVAIMPGYTYGEEG----RGFVRLNAG 340 (361)
T ss_dssp HHHHHHHHTTCEECEEGGGGCGGG----TTEEEEECC
T ss_pred HHHHHHHHhCCEEEEeccccCCCC----CCEEEEEEc
Confidence 788888898999999887665332 467999975
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.2e-20 Score=221.41 Aligned_cols=333 Identities=14% Similarity=0.107 Sum_probs=223.2
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCC--CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASEN--YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLK 83 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n--~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la 83 (1342)
.+.....+.++..+...+++ ...|+|..|.+ ..|+.+++|+.+.+.. . . .|+...+..++++ .++
T Consensus 5 ~~~~~~~~~~~~~~~~la~~-~~~I~ls~g~p~~~~p~~i~~al~~~l~~-~-~------~Y~~~~G~~elr~----aiA 71 (368)
T d1v2da_ 5 PRTEAAKESIFPRMSGLAQR-LGAVNLGQGFPSNPPPPFLLEAVRRALGR-Q-D------QYAPPAGLPALRE----ALA 71 (368)
T ss_dssp GGGGGC---CHHHHHHHHHH-HTCEECCCCSCSSCCCHHHHHHHHHHTTT-S-C------SCCCTTCCHHHHH----HHH
T ss_pred hhhhhcCCCHHHHHHHHhcc-CCCEEecCCCCCCCCCHHHHHHHHHHhhc-c-c------CCCCCcCCHHHHH----HHH
Confidence 35566666777777554444 34678876653 3455699998887642 1 1 2444444556766 677
Q ss_pred HHhCCC-CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHH
Q psy13354 84 KIFNAE-AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYL 161 (1342)
Q Consensus 84 ~~~g~~-~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~ 161 (1342)
++++.+ +.+++++|+++|+..++.+++.+||.|++..+.++.+. ......|..+..++++.. +.+.+|++.+++.
T Consensus 72 ~~~~~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~ 148 (368)
T d1v2da_ 72 EEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYL---PDAFLAGAKARLVRLDLTPEGFRLDLSALEKA 148 (368)
T ss_dssp HHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHH---HHHHHTTCEEEEEECEEETTEEECCHHHHHTT
T ss_pred hhcccCCcceeeccchHHHHHHHhhccccccccccccCCcchhhh---hHHHhcCCccceeccccccccccCCHHHHHHh
Confidence 778887 45556659999999999999999999998776655443 444556665566655433 4577999999998
Q ss_pred HHhcCCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--CCCcEEEecCCccCCCC
Q psy13354 162 AKKNKPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--PFADFITSTTHKSLRGP 234 (1342)
Q Consensus 162 i~~~~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~~~Divv~S~sK~l~gp 234 (1342)
+++. ++++++++++|| + ..++++|+++|++||+++|+|++|.............. ....+++.|+||.+ +.
T Consensus 149 ~~~~-~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~-~~ 226 (368)
T d1v2da_ 149 LTPR-TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRL-EA 226 (368)
T ss_dssp CCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHT-TC
T ss_pred hccC-ceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccc-cc
Confidence 8764 455555566666 2 22589999999999999999999875444222111111 11346778888888 55
Q ss_pred Ce---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC
Q psy13354 235 RG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-LKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG 310 (1342)
Q Consensus 235 ~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~ 310 (1342)
.| ||+++++++++.+......+..+ +..+.+.+++.++... ...+.+..++.+.++++++.+.|++.|+++.. +
T Consensus 227 ~G~R~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-p 304 (368)
T d1v2da_ 227 TGYRVGWIVGPKEFMPRLAGMRQWTSFS-APTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYV-P 304 (368)
T ss_dssp GGGCCEEEECCTTTHHHHHHHHHHHTSS-CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEC-C
T ss_pred cccccccccccccccchhhhhhhccccc-cccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEec-C
Confidence 55 99999999888776644333333 3344444444333322 23477888888999999999999999998754 5
Q ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 311 TKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 311 ~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+++++|+++++.. ..++++++||.+.|+..++.... +.+++|++++.
T Consensus 305 ~g~~~~~~~l~~~~-----~~~ll~~~gI~v~pg~~F~~~~~--~~~~iRis~~~ 352 (368)
T d1v2da_ 305 EGTYFLMAELPGWD-----AFRLVEEARVALIPASAFYLEDP--PKDLFRFAFCK 352 (368)
T ss_dssp SBSSEEEEECTTCC-----HHHHHHHTCEECEEGGGGCSSSC--CTTEEEEECCS
T ss_pred CceeEEEEeCCccH-----HHHHHHhCCEEEEechhhCCCCC--CCCEEEEEecC
Confidence 67899999987532 34567888999998765543221 25689999863
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.85 E-value=1.9e-20 Score=224.27 Aligned_cols=324 Identities=15% Similarity=0.096 Sum_probs=211.0
Q ss_pred ceeeeecCCCCcHHHHHH-HhHHHHhccc-cCC---CCCCccCCcchHHHHHHHHHHHHHHHhCCC-----CceEecCCH
Q psy13354 29 NIELIASENYTSLAVMEA-QGTLLTNKYA-EGY---PGKRYYGGCKFIDLIEKIAINRLKKIFNAE-----AANVQPHSG 98 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~ea-l~~~l~~~~~-~g~---~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-----~~vi~~~sG 98 (1342)
.|+|..++|.+....++. +.+....... .+. .....|+...+..+|++++++++.+.+|.. +.+++++|+
T Consensus 38 ~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~ 117 (428)
T d1iaya_ 38 VIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGA 117 (428)
T ss_dssp BEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHH
T ss_pred eEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCH
Confidence 588889999887764332 2211100000 000 001134555566799999999999887732 345555477
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhh-hCCceeEEEEecCC--CCCCCCHHHHHHHHHh-----cCCeEE
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLN-MSGKWFNSICYGLN--KKEKIDYKKVEYLAKK-----NKPKLI 170 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~-~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~-----~~~~li 170 (1342)
++|+..++.++++|||+|+++.+.++.+ ...+. ..|. ++++++.+ +++.+|++.++..+.. .+++++
T Consensus 118 ~~al~~~~~~l~~~Gd~Vlv~~P~y~~~---~~~~~~~~g~--~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 192 (428)
T d1iaya_ 118 TGANETIIFCLADPGDAFLVPSPYYPAF---NRDLRWRTGV--QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGL 192 (428)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESSCCTTH---HHHTTTTTCC--EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEccCCchHH---HHHHHHhcCC--eEEEeecccccccccccccccchhhhhhccCCCceEE
Confidence 8899999999999999999877655544 33333 3355 45555544 6688999988765431 234566
Q ss_pred EEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC------------CCcEEEecCCccCCC
Q psy13354 171 IAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP------------FADFITSTTHKSLRG 233 (1342)
Q Consensus 171 v~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~------------~~Divv~S~sK~l~g 233 (1342)
++++++|| +..++++|+++|++||++||+||+|....+....+.+... ...++++|+||.+ +
T Consensus 193 ~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~ 271 (428)
T d1iaya_ 193 ILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-G 271 (428)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-S
T ss_pred EEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcc-c
Confidence 66676766 2236899999999999999999999866554333222110 1237889999999 5
Q ss_pred CCe---eEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHH--HHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 234 PRG---GFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVA--FKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 234 p~G---G~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~a--l~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
..| ||+++.+ .+.+.+....... ....+.+.++++. .......++++.++.+.++++.+.+.|+..|+++.
T Consensus 272 ~~GlRiG~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~ 348 (428)
T d1iaya_ 272 LPGFRVGIIYSFNDDVVNCARKMSSFG---LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCL 348 (428)
T ss_dssp CGGGCEEEEEESCHHHHHHHHHHHTTS---CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred CCCcccccccccccchhhhhhhhhccc---ccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhCCCEEe
Confidence 555 9999865 5556555432222 1223333332222 22333345677788889999999999999998875
Q ss_pred eCCCCCeEEEEEccCCCC------CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNKKI------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~~~------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
. +.+++++|++++.... +.+++..+++++||.+.|+..++... ++++|++++..
T Consensus 349 ~-p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~----~g~~Ris~a~~ 408 (428)
T d1iaya_ 349 K-NNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQE----PGWFRVCFANM 408 (428)
T ss_dssp C-CSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSS----SSEEEEECSSS
T ss_pred c-CCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCC----CCEEEEEeCCC
Confidence 4 6778999999875321 23578888998999999987776543 46799998643
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.85 E-value=1e-20 Score=226.73 Aligned_cols=325 Identities=13% Similarity=0.098 Sum_probs=214.0
Q ss_pred ceeeeecCCCCcHHHHHH-HhHHHHhcc--ccCC---CCCCccCCcchHHHHHHHHHHHHHHHhCCC-----CceEecCC
Q psy13354 29 NIELIASENYTSLAVMEA-QGTLLTNKY--AEGY---PGKRYYGGCKFIDLIEKIAINRLKKIFNAE-----AANVQPHS 97 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~ea-l~~~l~~~~--~~g~---~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-----~~vi~~~s 97 (1342)
.|+|..++|.+.-..++. +........ ..+. ..-..|+...+..+|++++++++.+.+|.. +.+++++|
T Consensus 38 ~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G 117 (431)
T d1m7ya_ 38 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAG 117 (431)
T ss_dssp BEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEH
T ss_pred EEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCC
Confidence 588889999887654333 221100000 0000 000125555666799999999999887732 34555547
Q ss_pred HHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhh-hCCceeEEEEecCC--CCCCCCHHHHHHHHHh-----cCCeE
Q psy13354 98 GSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLN-MSGKWFNSICYGLN--KKEKIDYKKVEYLAKK-----NKPKL 169 (1342)
Q Consensus 98 Gs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~-~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~-----~~~~l 169 (1342)
+++|+..++.++++|||+|+++.+.++.+. ..+. ..|. +.++++.+ +++.+|++.+++.+.+ .+.++
T Consensus 118 ~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~---~~~~~~~g~--~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 192 (431)
T d1m7ya_ 118 ATSANETFIFCLADPGEAVLIPTPYYPGFD---RDLKWRTGV--EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKG 192 (431)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCTTHH---HHTTTTTCC--EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCchhHH---HHHHHhcCc--eeccccccchhcccccHHHhhhhhhhhhhccCcceE
Confidence 788999999999999999998886665443 2333 2345 55555554 4578999998887753 13456
Q ss_pred EEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--------------CCcEEEecCCcc
Q psy13354 170 IIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--------------FADFITSTTHKS 230 (1342)
Q Consensus 170 iv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--------------~~Divv~S~sK~ 230 (1342)
+++++|+|| ....+++|+++|++||++||+||+|+...+....+.+... ...+++.|+||.
T Consensus 193 i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~ 272 (431)
T d1m7ya_ 193 VLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKD 272 (431)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSS
T ss_pred EEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCccc
Confidence 677777776 3336899999999999999999999865554332222110 013788999999
Q ss_pred CCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHHhCCcE
Q psy13354 231 LRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAF--KEVLKPDFKIYQKQVVKNAKILSKILDQRGIR 305 (1342)
Q Consensus 231 l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al--~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~ 305 (1342)
+ |..| ||++++++++.........+. ...++.+.++++.+ .....++..+.+.++.++++.+.+.|++.|++
T Consensus 273 ~-~~~G~RiG~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~ 349 (431)
T d1m7ya_ 273 L-GLPGFRVGAIYSNDDMVVAAATKMSSFG--LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGIS 349 (431)
T ss_dssp S-CCGGGCEEEEEESCHHHHHHHHHHGGGS--CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred c-cCCCCccceeccchhhhHHHHHHHhccc--cccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcCCcE
Confidence 9 6555 999999877654443222222 22233333332222 22223467778888999999999999999999
Q ss_pred EeeCCCCCeEEEEEccCCCC------CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 306 IVSGGTKSHIILVDLRNKKI------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 306 ~~~~~~~~~~v~i~~~~~~~------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+.. +.+++++|++++.... +.+++..+++++||.+.|+..++... ++++|++++..
T Consensus 350 ~~~-p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~----~~~~Ri~~a~~ 411 (431)
T d1m7ya_ 350 CLN-GNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTE----PGWFRVCFANL 411 (431)
T ss_dssp ECC-CCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSS----TTEEEEECSSS
T ss_pred Eec-CCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCC----CCEEEEEeCcC
Confidence 865 5678999999875321 23678888999999999987766543 36799998653
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.3e-20 Score=224.89 Aligned_cols=347 Identities=12% Similarity=0.116 Sum_probs=236.2
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCC-CC-cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASEN-YT-SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLK 83 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n-~l-~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la 83 (1342)
.+++.+++.-+..+.+.. ...+.|+|..+++ +. |+.+++++.+++.+.. ....|+...+..+|++++++++.
T Consensus 5 ~r~~~~~~~~~~~~~~~~-~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~-----~~~~Y~~~~G~~~LReaia~~~~ 78 (418)
T d1w7la_ 5 RRLDGIDYNPWVEFVKLA-SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDF-----MLNQYTKTFGYPPLTKILASFFG 78 (418)
T ss_dssp GGGTTCCCCTHHHHHHHH-HTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCG-----GGGSCCCTTCCHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHh-CCCCCEECCCCCCCCCCCHHHHHHHHHHHhCCC-----cccCCCCCcCCHHHHHHHHHHHH
Confidence 456666655555555443 3346788888873 33 3448888888775321 11225566677799999999999
Q ss_pred HHhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC----------CC
Q psy13354 84 KIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL----------NK 149 (1342)
Q Consensus 84 ~~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~----------~~ 149 (1342)
+.+|.+ +.+++++|+++|+..++.+++.+||.|+++++.++.+. ..+...|.....++... +.
T Consensus 79 ~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~---~~~~~~g~~~v~~~~~~~~~~~~~~~~~~ 155 (418)
T d1w7la_ 79 ELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYE---PMTMMAGGRPVFVSLKPGPIQNGELGSSS 155 (418)
T ss_dssp HHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH---HHHHHTTCEEEEEECEECC---CCSEEGG
T ss_pred HHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhH---HHHHHcCCEeecccccccccccccccccc
Confidence 888876 23555647788999999999999999998886666554 33455555333333211 23
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-----
Q psy13354 150 KEKIDYKKVEYLAKKNKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF----- 219 (1342)
Q Consensus 150 ~~~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~----- 219 (1342)
++.+|.+++.....+ ..+++++++++|| +...+++|+++|++|+++||+|++|....+.+..+.+....
T Consensus 156 ~~~~d~~~~~~~~~~-~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~ 234 (418)
T d1w7la_ 156 NWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWE 234 (418)
T ss_dssp GEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGG
T ss_pred Ccccchhhhhccccc-cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHcccccc
Confidence 466788777766544 3456666666666 33378999999999999999999997665544333332221
Q ss_pred CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHh------ccchHHHHHHHHHH
Q psy13354 220 ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV------LKPDFKIYQKQVVK 290 (1342)
Q Consensus 220 ~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~------l~~~~~~~~~~l~~ 290 (1342)
..+++.|+||.+ +.+| ||++++++++..+.........+. +++.+.++..++... ...++...++.+.+
T Consensus 235 ~~i~~~S~SK~~-~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 312 (418)
T d1w7la_ 235 RTLTIGSAGKTF-SATGWKVGWVLGPDHIMKHLRTVHQNSVFHC-PTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQR 312 (418)
T ss_dssp GEEEEEEHHHHT-TCGGGCCEEEECCHHHHHHHHHHHHTTTSCC-CHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHH
T ss_pred ccceecccCccc-cCCCCcccccccchhhhhhhccccccccccc-cchhhHHHHHHhhhccccccccccccccchhhhhh
Confidence 247889999998 5566 999999998888776543333333 355555554444332 13467778889999
Q ss_pred HHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC-------------CCCCHHHHHHHHHHCCceeeeccCCCCCC-Ccccc
Q psy13354 291 NAKILSKILDQRGIRIVSGGTKSHIILVDLRN-------------KKITGKIAESILESANIICNKNSIPNDPE-KPYFT 356 (1342)
Q Consensus 291 ~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~-------------~~~~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~~~ 356 (1342)
+++.+.+.|.+.|+++.. |.+++++|+++++ ...+.+++..+++++||.+.|+..++... ...+.
T Consensus 313 ~r~~l~~~L~~~g~~~~~-P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~ 391 (418)
T d1w7la_ 313 CRDHMIRSLQSVGLKPLI-PQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFD 391 (418)
T ss_dssp HHHHHHHHHHTTTCEEEE-CSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSC
T ss_pred hhhhhhhhhhhcCCcccC-CCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCC
Confidence 999999999999998755 5789999998753 12246789999999999999987665321 11125
Q ss_pred ccccccccc
Q psy13354 357 SGIRLGSSA 365 (1342)
Q Consensus 357 ~~lRi~~~~ 365 (1342)
+++|++++.
T Consensus 392 ~~iRis~~~ 400 (418)
T d1w7la_ 392 HYIRFCFVK 400 (418)
T ss_dssp SEEEEECCC
T ss_pred CEEEEEEcC
Confidence 689999753
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=4.5e-20 Score=217.10 Aligned_cols=324 Identities=16% Similarity=0.112 Sum_probs=223.1
Q ss_pred HHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---C
Q psy13354 16 WEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---A 90 (1342)
Q Consensus 16 ~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~ 90 (1342)
.+..+.......+.|+|..|++. .|+.+++++.+.+.+.. ..|+...+..++++++.+++....|.+ +
T Consensus 17 ~~~a~~~~~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~-------~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~ 89 (375)
T d1o4sa_ 17 DAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGE-------VKYTDPRGIYELREGIAKRIGERYKKDISPD 89 (375)
T ss_dssp HHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCC-------CCCCCTTCCHHHHHHHHHHHHHHHTCCCCGG
T ss_pred HHHHHHHHHCCCCeEECCCcCCCCCCCHHHHHHHHHHHhcCC-------cCCCCCcCCHHHHHHHHhhhhhccccccccc
Confidence 33333333334566888888643 34558888887764311 125566677799999999998887765 4
Q ss_pred ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEE
Q psy13354 91 ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLI 170 (1342)
Q Consensus 91 ~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~li 170 (1342)
.+++++++++|+..++.++++|||.|+++.+.++.+ .......+.....+....++.+.+|.+.++....+ .++++
T Consensus 90 ~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 165 (375)
T d1o4sa_ 90 QVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSY---IPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG-KTKAV 165 (375)
T ss_dssp GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTH---HHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT-TEEEE
T ss_pred cccccCcHHHHHHHHHHHHhCCCCEEEEccCccccc---hhhhhccccccccccccccccccchhHHHHHhhcc-CccEE
Confidence 455554888899999999999999999887655544 44445566655555444446677888888876554 45566
Q ss_pred EEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC--CCcEEEecCCccCCCCCe---eE
Q psy13354 171 IAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP--FADFITSTTHKSLRGPRG---GF 238 (1342)
Q Consensus 171 v~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~--~~Divv~S~sK~l~gp~G---G~ 238 (1342)
++++|+|| +...+++|+++|++|+++||+||+|............ ..+ ...++++|+||.+ +.+| ||
T Consensus 166 ~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~G~R~G~ 244 (375)
T d1o4sa_ 166 LINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSH-SMTGWRVGY 244 (375)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTT-TCGGGCCEE
T ss_pred EEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhc-cCCcccccc
Confidence 66666776 3337899999999999999999998765442221110 011 1358899999999 6666 99
Q ss_pred EEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEE
Q psy13354 239 ILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILV 318 (1342)
Q Consensus 239 iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i 318 (1342)
++++++.++.+........... ........ . .....+.....+.+.++++.+.+.|++.|+.+.. +.+++++|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~-~~~~~~~~~~~~~~~~r~~~~~~~l~~~g~~~~~-p~gg~f~~~ 318 (375)
T d1o4sa_ 245 LISSEKVATAVSKIQSHTTSCI-NTVAQYAA---L-KALEVDNSYMVQTFKERKNFVVERLKKMGVKFVE-PEGAFYLFF 318 (375)
T ss_dssp EECCHHHHHHHHHHHHHHTCSC-CHHHHHHH---H-HHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCC-CSBSSEEEE
T ss_pred ccccccchhhhhhhhccccccc-cccchhhh---h-hhcccchhhhHHHHHHHHHHHHHHHHhcCceEec-CCccEEEEE
Confidence 9999988877765432222222 12222221 1 2223355667788899999999999999988743 677899999
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+++. .+.+++.++++++||.+.|+..++. ++++|++++.
T Consensus 319 ~~~~--~~~~~~~~ll~~~gV~v~pG~~F~~------~g~iRis~~~ 357 (375)
T d1o4sa_ 319 KVRG--DDVKFCERLLEEKKVALVPGSAFLK------PGFVRLSFAT 357 (375)
T ss_dssp ECSS--CHHHHHHHHHHHHCEECEEGGGGTC------TTEEEEECCS
T ss_pred ECCC--CHHHHHHHHHHhCCEEEEEccccCC------CCeEEEEEcC
Confidence 9975 3678899999888999999876653 3479999864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=4.5e-20 Score=202.85 Aligned_cols=204 Identities=23% Similarity=0.292 Sum_probs=165.6
Q ss_pred cCCCCccccccchhhHHHHHHHHHc----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchh
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDK----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~ 460 (1342)
.||++|+|++||+++++.|..++.. +..++.+|||||||+|||++|+++++++.+
T Consensus 3 ~RP~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~--------------------- 61 (239)
T d1ixsb2 3 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV--------------------- 61 (239)
T ss_dssp CCCCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTC---------------------
T ss_pred cCCCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---------------------
Confidence 4899999999999999999888753 334456899999999999999999999874
Q ss_pred hhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcC---------------
Q psy13354 461 KIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEE--------------- 525 (1342)
Q Consensus 461 ~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~--------------- 525 (1342)
++...+++...........+.. ......++++||+|.++....+.++..+++
T Consensus 62 --------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~ 128 (239)
T d1ixsb2 62 --------NLRVTSGPAIEKPGDLAAILAN-----SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAART 128 (239)
T ss_dssp --------CEEEEETTTCCSHHHHHHHHHT-----TCCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCE
T ss_pred --------CeEeccCCccccchhhHHHHHh-----hccCCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhh
Confidence 3566666655544444444332 234557999999999999988888887753
Q ss_pred ---CCCcEEEEEEeCCCCCC-hHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHH
Q psy13354 526 ---PPKYIKFILATTEPQKI-PITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLT 601 (1342)
Q Consensus 526 ---p~~~~vlIl~t~~~~kl-~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L 601 (1342)
.++..++|++++++... .+.+.++|..+.|.+++.+++..++...+..+++.+++++++.+++.++||+|.+++.|
T Consensus 129 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~gd~R~a~~~l 208 (239)
T d1ixsb2 129 IRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLF 208 (239)
T ss_dssp EEEECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTSSHHHHHHHH
T ss_pred cccCCCCEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCCCHHHHHHHH
Confidence 13456788888877754 46777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC----CCCCHHHHHHHhc
Q psy13354 602 DQAINYSS----EKITLNSMQEMLS 622 (1342)
Q Consensus 602 ~kl~~~~~----~~It~e~V~~~v~ 622 (1342)
+.+..++. ..||.+++.+++.
T Consensus 209 ~~~~~~a~~~~~~~It~~~~~~~l~ 233 (239)
T d1ixsb2 209 RRVRDFAQVAGEEVITRERALEALA 233 (239)
T ss_dssp HHHHHHHTTSCCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHh
Confidence 98776652 4499998888774
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.84 E-value=2.3e-20 Score=222.46 Aligned_cols=318 Identities=14% Similarity=0.080 Sum_probs=215.5
Q ss_pred CceeeeecCCC------CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--------C-Cce
Q psy13354 28 NNIELIASENY------TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--------E-AAN 92 (1342)
Q Consensus 28 ~~i~l~a~~n~------l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--------~-~~v 92 (1342)
+.|+|..+++. .++.+++++.+.+.... ...|+...+..+|++++++++.+.++. + +.+
T Consensus 31 ~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I 104 (412)
T d1bw0a_ 31 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE------CNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNV 104 (412)
T ss_dssp CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC------SSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGE
T ss_pred CcEECcCCCCCCCCCccccHHHHHHHHHHhhCCC------CCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeE
Confidence 34888887643 22346677666553221 123555566679999999999887642 1 345
Q ss_pred EecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEE
Q psy13354 93 VQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIA 172 (1342)
Q Consensus 93 i~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~ 172 (1342)
++++|+++|+..++.++++|||+|+++.+.++.+ ...+...|..+..+++..+.++.++++.+++...+ ..+++++
T Consensus 105 ~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~---~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~~l 180 (412)
T d1bw0a_ 105 VLCSGGSHGILMAITAICDAGDYALVPQPGFPHY---ETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDD-KTKLLIV 180 (412)
T ss_dssp EEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHH---HHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-TEEEEEE
T ss_pred EEecccccchhhhhhhhhccccceeeeeccchhh---hhhhhccCccccccccccccccchhhHHHHhhhhc-ccccccc
Confidence 5554788899999999999999999888665544 45557778866666655556778899999887765 4455666
Q ss_pred cCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC------C--CcEEEecCCccCCCCCe---
Q psy13354 173 GASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP------F--ADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 173 ~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~------~--~Divv~S~sK~l~gp~G--- 236 (1342)
++++|| ...++++|+++|++|+++||+||+|....+.......... . .-++++|+||.+ +.+|
T Consensus 181 ~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~-~~~G~Rv 259 (412)
T d1bw0a_ 181 TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNL-VVPGWRL 259 (412)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT-SCGGGCC
T ss_pred ccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccC-ccCCCCc
Confidence 666666 2336899999999999999999999765443322221111 1 136778999999 6667
Q ss_pred eEEEEechh------HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-CCcEEeeC
Q psy13354 237 GFILMKKKY------KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-RGIRIVSG 309 (1342)
Q Consensus 237 G~iv~~~~l------~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~g~~~~~~ 309 (1342)
||+++++.. +...... .....++..+.+.++...+.....+++.+.++++.++++.+.+.|.+ .|+.+. .
T Consensus 260 G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~-~ 336 (412)
T d1bw0a_ 260 GWLLYVDPHGNGPSFLEGLKRV--GMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPT-M 336 (412)
T ss_dssp EEEEEECTTCSCHHHHHHHHHH--HHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEC-C
T ss_pred ccccccchhhcchhhhhhhccc--cccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCceec-C
Confidence 999988632 2222111 11222333444444444444333447788889999999999999977 477764 4
Q ss_pred CCCCeEEEEEccC-----CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 310 GTKSHIILVDLRN-----KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 310 ~~~~~~v~i~~~~-----~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.+++++|+.++. ...+.+++.++++++||.+.|+..++. ++++|++++.
T Consensus 337 p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~------~g~iRis~~~ 391 (412)
T d1bw0a_ 337 PRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA------PGFTRLTTTR 391 (412)
T ss_dssp CCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC------TTEEEEECCS
T ss_pred CCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCC------CCeEEEEEcC
Confidence 6778899988752 234568899999988999999876653 3579999864
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=7.6e-19 Score=208.54 Aligned_cols=322 Identities=16% Similarity=0.108 Sum_probs=226.1
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc--
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al-- 109 (1342)
++..+.|..+++++.+.+.+.+ +++++..+.......+..+++++.+++++|+. +.++++.|+|+|++.++.++
T Consensus 29 a~~~~~p~~v~~~~~~~~~~~~--~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~ 106 (405)
T d1jf9a_ 29 AASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGN 106 (405)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHhcc--CCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccc
Confidence 4456888889999988886544 34433222222223345556899999999954 57777779999998887763
Q ss_pred --cCCCCEEEEeeccCCccchhhHHh-hhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHH
Q psy13354 110 --LNPGDTIMGMSLQEGGHLTHGMML-NMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFER 185 (1342)
Q Consensus 110 --~~pGD~Vlv~~~~~~~~~s~~~~~-~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~ 185 (1342)
..+||+|++.+.+|++....+..+ ...|+.+. .++.+.++.+|++.+++++.+++..+++.+.++.+ ...|+++
T Consensus 107 ~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~--~~~~~~~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~ 184 (405)
T d1jf9a_ 107 SNVRAGDNIIISQMEHHANIVPWQMLCARVGAELR--VIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAE 184 (405)
T ss_dssp HHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEE--EECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHH
T ss_pred cccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEE--EECCCCCCcCCHHHHHHhccCCcEEEEEecCCCcccccCchHH
Confidence 689999999999998877776554 55677444 45667788999999999887644334444445545 5569999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC----CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC------
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------ 254 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------ 254 (1342)
|+++|+++|+++++|.+|+.|.. +++ .+|++++|+|||+ ||.| |+++.+++..+.+.....
T Consensus 185 i~~~~~~~g~~~~vD~~q~~g~~-------~id~~~~~~D~~~~s~hK~~-Gp~G~g~l~v~~~~~~~~~~~~~~~~~~~ 256 (405)
T d1jf9a_ 185 MITLAHQHGAKVLVDGAQAVMHH-------PVDVQALDCDFYVFSGHKLY-GPTGIGILYVKEALLQEMPPWEGGGSMIA 256 (405)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTS-------CCCHHHHTCSEEEEEGGGTT-SCSSCEEEEECHHHHTTCCCSSCSSSSEE
T ss_pred hhhHHHHcCCeeecccceecccc-------ccchhhcCCceeeccccccc-cCCCceeeeechhhhcccCcccccccccC
Confidence 99999999999999999998876 343 3799999999998 8999 999999887655432111
Q ss_pred ---------------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeC-CCCCeEEEE
Q psy13354 255 ---------------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSG-GTKSHIILV 318 (1342)
Q Consensus 255 ---------------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~-~~~~~~v~i 318 (1342)
.+-.|+++.+...++..++......+.+.+.++.....+++.+.++..+...... ....+++.+
T Consensus 257 ~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf 336 (405)
T d1jf9a_ 257 TVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF 336 (405)
T ss_dssp ECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEE
T ss_pred ccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEEEE
Confidence 1123577777777777776655555677788888888888889998876554442 233456667
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCC-Ccc-ccccccccccccccc
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPE-KPY-FTSGIRLGSSAITTR 369 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~-~~~~lRi~~~~~~t~ 369 (1342)
.++.. ..+....+|+++||.++.+..-..+. ..+ .++.+|+|++.++|.
T Consensus 337 ~~~~~--~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~ 387 (405)
T d1jf9a_ 337 NLGKH--HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTH 387 (405)
T ss_dssp EETTC--CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCH
T ss_pred EcCCC--CHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCH
Confidence 77643 34556666788899997643210000 000 035699999998885
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=3.9e-19 Score=210.21 Aligned_cols=324 Identities=15% Similarity=0.146 Sum_probs=210.7
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc---
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV--- 109 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al--- 109 (1342)
++..++++.|+++|.+.+.+....+++.+..+..+....++.+++++.+++++|++ +.+++++|+|+++..++.++
T Consensus 9 aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~ 88 (391)
T d1p3wa_ 9 SATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANF 88 (391)
T ss_dssp TTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhh
Confidence 45578889999999887754333344444333333344455667889999999998 55666769999998888765
Q ss_pred -cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHH
Q psy13354 110 -LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERF 186 (1342)
Q Consensus 110 -~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I 186 (1342)
+++||+|++.+..+++....+..+...|. ++..++.+.++.+|+++++++++++ +++|+++..+++ ...|+++|
T Consensus 89 ~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~--~v~~v~~~~~~~~d~~~~~~~i~~~-T~lv~is~~~n~tG~~~~~~~I 165 (391)
T d1p3wa_ 89 YQKKGKHIITSKTEHKAVLDTCRQLEREGF--EVTYLAPQRNGIIDLKELEAAMRDD-TILVSIMHVNNEIGVVQDIAAI 165 (391)
T ss_dssp HGGGCCEEEEETTSCHHHHHHHHHHHHTTC--EEEEECCCTTSCCCHHHHHHHCCTT-EEEEECCSBCTTTCCBCCHHHH
T ss_pred hcCCCCEEEEeccccchHHHHHHHHHHcCC--EEEEeCCCCCCeEcHHHHHHhCCCC-cEEEEEECCCCCCeeECCHHHH
Confidence 57999999999888877666666666677 4555577777889999999999764 456555554443 55599999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCC------cccc
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFP------GIQG 259 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~------~~~~ 259 (1342)
+++|++||+++++|++|+.|...-+.. ...+|++++|++||+ |+.| |+++.+++........... ...+
T Consensus 166 ~~~~~~~~~~~ivD~~~~~g~~~~d~~---~~~~D~~~~s~~k~~-g~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 241 (391)
T d1p3wa_ 166 GEMCRARGIIYHVDATQSVGKLPIDLS---QLKVDLMSFSGHKIY-GPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSG 241 (391)
T ss_dssp HHHHHHHTCEEEEECTTTBTTBCCCTT---TSCCSEEEEESTTTT-SCSSCEEEEECBTTBCCCCCSSCSSCTTTTTSCS
T ss_pred HHHhccCCcEEEEeeccccCCccccch---hcccccccccccccc-CCCceEEEEEecchhcccCCcccCCccccCcccC
Confidence 999999999999999999886621111 112699999999998 8888 9999988654444322111 2234
Q ss_pred CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee-CCC--CCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 260 GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS-GGT--KSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 260 ~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~~--~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
+...+...++..++..... ......+++.+.+.++.+.|...+...+. ... ..+++.+..+.. ..+.+...+.
T Consensus 242 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~- 317 (391)
T d1p3wa_ 242 TLPVHQIVGMGEAYRIAKE-EMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV--EGESLIMALK- 317 (391)
T ss_dssp CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTS--CHHHHHHHTT-
T ss_pred cchhhhhhhhhhhhhHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCC--ChHHHHHHhC-
Confidence 4445555555555444333 45556677888888888888886544333 111 223444444432 3344444443
Q ss_pred CCceeeecc--CCCCCCC-----------ccccccccccccccccc
Q psy13354 337 ANIICNKNS--IPNDPEK-----------PYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 337 ~GI~v~~~~--~p~~~~~-----------~~~~~~lRi~~~~~~t~ 369 (1342)
++.++.+. .+..... ....+.+|+|++.++|.
T Consensus 318 -~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~ 362 (391)
T d1p3wa_ 318 -DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTE 362 (391)
T ss_dssp -TEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCH
T ss_pred -CCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCH
Confidence 55554321 1111100 01124699999998774
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=5e-19 Score=211.34 Aligned_cols=323 Identities=11% Similarity=0.035 Sum_probs=210.4
Q ss_pred cCceeeeecC---CCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCH
Q psy13354 27 NNNIELIASE---NYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSG 98 (1342)
Q Consensus 27 ~~~i~l~a~~---n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sG 98 (1342)
.+.|+|..|. +.+|.. +.+++.+.+...... ...|+...+..+|++++++++.+.+|.+ +.+++++|+
T Consensus 38 ~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~----~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~ 113 (420)
T d1vp4a_ 38 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHY----TLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGS 113 (420)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHH----HTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHH
T ss_pred CCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCcc----ccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccch
Confidence 4668887775 234544 556655555422110 1225556667799999999999888753 445555477
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh--------cCCeEE
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK--------NKPKLI 170 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~--------~~~~li 170 (1342)
++|+..++.++++|||+|+++.+.++ .+.......|..+..+ +.++. .+|++.++..+.+ ....++
T Consensus 114 ~~al~~~~~~~~~~Gd~Vlv~~P~y~---~~~~~~~~~g~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 187 (420)
T d1vp4a_ 114 QQALDLIGKLFLDDESYCVLDDPAYL---GAINAFRQYLANFVVV--PLEDD-GMDLNVLERKLSEFDKNGKIKQVKFIY 187 (420)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCH---HHHHHHHTTTCEEEEE--EEETT-EECHHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred hhhHHHHHHhhhcccccccccccccc---chhHHHHHHhhhcccc--ccccc-ccccchhhhhhhhhHHHhhccccceee
Confidence 88999999999999999998775554 4445556677754444 44433 3688877665432 123456
Q ss_pred EEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC----CCCcEEEecCCccCCCCCe---eE
Q psy13354 171 IAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV----PFADFITSTTHKSLRGPRG---GF 238 (1342)
Q Consensus 171 v~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l----~~~Divv~S~sK~l~gp~G---G~ 238 (1342)
++++++|| ...++++|+++|++|+++||+|++|....+......... ....++++|++|++ + .| ||
T Consensus 188 ~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~-~-~G~RiG~ 265 (420)
T d1vp4a_ 188 VVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVL-A-PGLRIGM 265 (420)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTT-C-GGGCEEE
T ss_pred EecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEecccccc-c-ccccccc
Confidence 66676777 233789999999999999999999876544332222111 11346778889987 3 45 99
Q ss_pred EEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhC-----CcEEeeCCCC
Q psy13354 239 ILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-KPDFKIYQKQVVKNAKILSKILDQR-----GIRIVSGGTK 312 (1342)
Q Consensus 239 iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-~~~~~~~~~~l~~~a~~l~~~L~~~-----g~~~~~~~~~ 312 (1342)
+++++++++.+......+..++ +...+.+++..+.... .+++++.++.+.++++.+.+.|.+. |+++. .+.+
T Consensus 266 ~~~~~~~i~~l~~~~~~~~~~~-~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~-~p~g 343 (420)
T d1vp4a_ 266 VAGSKEFIRKIVQAKQSADLCS-PAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWV-KSEG 343 (420)
T ss_dssp EECCHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEEC-CCSB
T ss_pred ccccchhhhhhhhhhhhccccC-chhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEe-cCCc
Confidence 9999999988876544433333 3444444443333321 2245566677777888888887763 67764 4677
Q ss_pred CeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 313 SHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 313 ~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++++|+++++..++.++++.+ +++||.+.|+..++.... ..+++|++++..
T Consensus 344 g~f~~~~~~~~~d~~~~~~~l-~~~gV~v~PG~~F~~~~~--~~~~iRls~~~~ 394 (420)
T d1vp4a_ 344 GLFIWLTLPEGFDTWEMFEYA-KRKKVFYVPGRVFKVYDE--PSPSMRLSFCLP 394 (420)
T ss_dssp SSEEEEECCTTCCTTTTHHHH-HHHTEECEEGGGGCTTCC--CCSEEEEECSSS
T ss_pred eEEEEEECCCCCCHHHHHHHH-HHCCeEEEechhhCCCCC--CCCEEEEEeCcC
Confidence 899999998755555566554 556999999876654331 146799998653
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=3.7e-19 Score=210.26 Aligned_cols=317 Identities=13% Similarity=0.091 Sum_probs=207.5
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.|+|..|++.+ |+.+++++.+.. .+...|+...+..+|++++++++.+.+|.+ +.+++++|++++
T Consensus 28 ~~vi~l~~G~p~~~~p~~~~~al~~~~--------~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~ 99 (389)
T d2gb3a1 28 VRIHHLNIGQPDLKTPEVFFERIYENK--------PEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEA 99 (389)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHHHHTC--------CSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHH
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHhcC--------CCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccc
Confidence 4558888887543 334777765432 112336666777899999999999887764 445555477889
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
+..++.+++.+||.|+++.+.++. ........|. ..+.++.++ .+..+.+.+.....+ +++++++++++||
T Consensus 100 l~~~~~~l~~~gd~V~i~~P~y~~---~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~nP~NPtG 173 (389)
T d2gb3a1 100 ILFSFAVIANPGDEILVLEPFYAN---YNAFAKIAGV--KLIPVTRRMEEGFAIPQNLESFINE-RTKGIVLSNPCNPTG 173 (389)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTH---HHHHHHHHTC--EEEEEECCGGGTSCCCTTGGGGCCT-TEEEEEEESSCTTTC
T ss_pred ccccccccccCCCeEEEeCCCCcc---ccccccccCc--cccccccccccccchhhhhhhhccc-CccEEEeCCCCcccc
Confidence 999999999999999987755544 3444455665 344444442 233344444444333 4566666677777
Q ss_pred ---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC---CCcEEEecCCccCCCCCe---eEEEEechh-HHH
Q psy13354 179 ---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP---FADFITSTTHKSLRGPRG---GFILMKKKY-KKI 248 (1342)
Q Consensus 179 ---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~---~~Divv~S~sK~l~gp~G---G~iv~~~~l-~~~ 248 (1342)
+..++++|+++|++||++||+||+|....+.. ....... ...+++.|+||.+ +.+| ||++++++. .+.
T Consensus 174 ~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~-~~~~~~~~~~~~~~v~~s~sK~~-~~~GlRiG~~~~~~~~i~~~ 251 (389)
T d2gb3a1 174 VVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASALSIESDKVVVIDSVSKKF-SACGARVGCLITRNEELISH 251 (389)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCCTTEEEEEESTTTT-TCGGGCCEEEECSCHHHHHH
T ss_pred ccchHHHHHHHHhhcccCCEEEEEecccccccccc-ccccccccccccccccccccccc-cCcccceeeeeccchhHHHH
Confidence 33369999999999999999999987654432 2221111 2357888999999 6666 999997754 333
Q ss_pred HhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHH
Q psy13354 249 INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGK 328 (1342)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~ 328 (1342)
...... ...++....+.++. ++......+++..++++.++++.+.+.|++.|+.....+.+++++|++++.. ++.+
T Consensus 252 ~~~~~~--~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~lp~~-~~~~ 327 (389)
T d2gb3a1 252 AMKLAQ--GRLAPPLLEQIGSV-GLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVE-DAEE 327 (389)
T ss_dssp HHHHHH--HSCCCCHHHHHHHH-HHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSSS-CHHH
T ss_pred Hhhhhh--cccccccccccccc-ccccccchhcccccccccccchhhhhhhhhhccccccCCCceEEEEEeCCCC-CHHH
Confidence 333211 22223333343333 3333334467888899999999999999999876555677889999999754 4677
Q ss_pred HHHHHHHHC-----CceeeeccCCCCCCCcccccccccccc
Q psy13354 329 IAESILESA-----NIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 329 ~~~~ll~~~-----GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++..+++++ ||.+.|+..++...+ .+.+++|++++
T Consensus 328 ~~~~ll~e~~l~~~~v~v~pg~~f~~~~~-~~~~~iRis~~ 367 (389)
T d2gb3a1 328 FARWMLTDFNMDGETTMVAPLRGFYLTPG-LGKKEIRIACV 367 (389)
T ss_dssp HHHHHHHSCCBTTEEEECEEGGGGCSSTT-TTSSEEEEECC
T ss_pred HHHHHHHhhhhhhCCEEEEeCcccccCCC-CCCCEEEEEEc
Confidence 888888763 566777654433211 12467999976
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=3.1e-19 Score=188.99 Aligned_cols=138 Identities=22% Similarity=0.272 Sum_probs=123.2
Q ss_pred hHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCC-
Q psy13354 399 ISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS- 477 (1342)
Q Consensus 399 ~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~- 477 (1342)
..+.+++.++++. ++++||+||+|+|||++|..+++.+.. ....|+|+.++++..
T Consensus 2 ~~~~l~~~i~~~~-~~~~l~~G~~g~gk~~~a~~l~~~i~~-----------------------~~~~h~D~~~i~~~~~ 57 (198)
T d2gnoa2 2 QLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVEK-----------------------FPPKASDVLEIDPEGE 57 (198)
T ss_dssp HHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHHT-----------------------SCCCTTTEEEECCSSS
T ss_pred HHHHHHHHHhcCC-CceEEEECCCCCCHHHHHHHHHHHHhc-----------------------cccCCCCEEEEeCCcC
Confidence 3577888888875 567999999999999999999998863 123478999998754
Q ss_pred CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcC
Q psy13354 478 TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKK 557 (1342)
Q Consensus 478 ~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~ 557 (1342)
.-++++++++.+.+...|..+++||+||||+|.|+.+++|+|+++||+||.+++||++|++++++++||+|||+.+.|++
T Consensus 58 ~I~Id~IR~i~~~~~~~~~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~ 137 (198)
T d2gnoa2 58 NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNV 137 (198)
T ss_dssp CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred CCCHHHHHHHHHHHhhCcccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCH
Q psy13354 558 MLH 560 (1342)
Q Consensus 558 l~~ 560 (1342)
+++
T Consensus 138 p~~ 140 (198)
T d2gnoa2 138 PKE 140 (198)
T ss_dssp CHH
T ss_pred chH
Confidence 753
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.80 E-value=2.8e-18 Score=201.98 Aligned_cols=319 Identities=14% Similarity=0.111 Sum_probs=209.1
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc-c
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV-L 110 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al-~ 110 (1342)
.++..++|..|++++.+.+......+. ..+.......++.+.+++.+++++|++ +.+++++|||+|++.++.++ .
T Consensus 13 ~~~~~~~p~~v~ea~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~ 89 (381)
T d1elua_ 13 FGGQGILPTVALEAITAMYGYLQENGP---FSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDW 89 (381)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHHHHCS---SSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCC
T ss_pred CCcccCCCHHHHHHHHHHHHHhhcCCC---ccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhh
Confidence 345567777899998888754332211 112223444566677889999999987 45566669999999999998 7
Q ss_pred CCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC-C-cccCHHHHH
Q psy13354 111 NPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY-S-QYIDFERFY 187 (1342)
Q Consensus 111 ~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~-~-~~~~l~~I~ 187 (1342)
.+||+|+++...|++....+.. ....|+.+..++.+.+.....+.+.+++.+++ ++++++++..++ + ...|+++|.
T Consensus 90 ~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~-~t~~v~i~~~~n~tG~~~~~~~I~ 168 (381)
T d1elua_ 90 HQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILSHLLWNTGQVLPLAEIM 168 (381)
T ss_dssp CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTCCBCCHHHHH
T ss_pred cCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcc-cccccccccccccccccchhhHHH
Confidence 8999999988777665444433 34457755555433222222224556555554 445555555444 3 555999999
Q ss_pred HHHHHc----CCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCc------
Q psy13354 188 HIAKNI----NSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPG------ 256 (1342)
Q Consensus 188 ~la~~~----gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~------ 256 (1342)
++|+++ ++++++|++|+.|...... ....+|++++|+|||+++|.| |+++.+++..+.+......+
T Consensus 169 ~l~~~~~~~~~~~~~vD~~~~~g~~~~~~---~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~ 245 (381)
T d1elua_ 169 AVCRRHQGNYPVRVLVDGAQSAGSLPLDF---SRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYG 245 (381)
T ss_dssp HHHHHCCSSSCCEEEEECTTTBTTBCCCT---TTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEEC
T ss_pred HHHhhcccccccccccccccccccccccc---cccccccccccccccccccchhhHHHhhHHHHHhcCcccccccccccc
Confidence 999985 6999999999887652110 111379999999999988988 99999987776654322111
Q ss_pred ---------------cccCCcHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-CCCCeEEEE
Q psy13354 257 ---------------IQGGPLMHVIAAKAVAFKEVLKPD-FKIYQKQVVKNAKILSKILDQR-GIRIVSG-GTKSHIILV 318 (1342)
Q Consensus 257 ---------------~~~~~~~~~~~Aaa~al~~~l~~~-~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-~~~~~~v~i 318 (1342)
..+++......++.+++......+ .+...++..++++++.+.|++. |++++.+ .....++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf 325 (381)
T d1elua_ 246 AKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSF 325 (381)
T ss_dssp TTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEE
T ss_pred cccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEE
Confidence 124555555565555554443222 3445678888999999999996 7777652 223457777
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+.+.. ..+.+.+.|+++||.++.... ++++|+|++.++|
T Consensus 326 ~~~~~~-~~~~i~~~L~~~gi~v~~~~~---------~~~lRis~~~~nt 365 (381)
T d1elua_ 326 TVDSPL-GHRAIVQKLEEQRIYLRTIAD---------PDCIRACCHYITD 365 (381)
T ss_dssp EECSSS-CHHHHHHHHHHTTEECEEETT---------TTEEEEECCTTCC
T ss_pred EcCCCC-CHHHHHHHHHhCCcEEEecCC---------CCEEEEecCCCCC
Confidence 776543 445555667778999875422 2469999988766
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.80 E-value=5.7e-19 Score=209.65 Aligned_cols=326 Identities=13% Similarity=0.029 Sum_probs=203.6
Q ss_pred cCceeeeecCC---CCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHH
Q psy13354 27 NNNIELIASEN---YTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGS 99 (1342)
Q Consensus 27 ~~~i~l~a~~n---~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs 99 (1342)
.+.|+|..|.. .+|.+ +.+++.+.+.+.... ...|+...+..++++++++++.+.+|.+ +.+++++|++
T Consensus 29 ~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~----~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~ 104 (403)
T d1wsta1 29 SDVISLAGGLPAPETFPVETIKKIAVEVLEEHADK----ALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQ 104 (403)
T ss_dssp SSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHH----HHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHH
T ss_pred CCcEECCCCCCCccccCHHHHHHHHHHHHHhCccc----ccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccch
Confidence 45677766542 23433 555655555322110 1125556667799999999998887754 4555665889
Q ss_pred HHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHH-HHHHHHhcC--CeEEEEcCCC
Q psy13354 100 QANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKK-VEYLAKKNK--PKLIIAGASA 176 (1342)
Q Consensus 100 ~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~-Le~~i~~~~--~~liv~~~s~ 176 (1342)
+++..++.+++++||+|++..+.+ ..+...+...|..+..++...+..+...... .+......+ ..++++++++
T Consensus 105 ~al~~~~~~l~~~gd~v~~~~P~y---~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 181 (403)
T d1wsta1 105 QALDLIGRVFLNPGDPIVVEAPTY---LAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQ 181 (403)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCC---HHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSC
T ss_pred HHHHHHHHHHhhcCCccccCCCcc---hhhhHHHhhccccceeEeecccCCccccccccchhhhhccccccccccccccC
Confidence 999999999999999999877544 4445555667775555544332111112222 222222222 3455556666
Q ss_pred CC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--C--CCcEEEecCCccCCCCCe---eEEEEech
Q psy13354 177 YS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--P--FADFITSTTHKSLRGPRG---GFILMKKK 244 (1342)
Q Consensus 177 ~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~--~~Divv~S~sK~l~gp~G---G~iv~~~~ 244 (1342)
|| ...++++|+++|++||++||+||+|....+......... + ...++++|+||++ + +| ||++++++
T Consensus 182 NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~-~G~RiG~~i~~~~ 259 (403)
T d1wsta1 182 NPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKIL-A-PGFRIGWVAAHPH 259 (403)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTT-C-GGGCCEEEEECHH
T ss_pred CCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEcccccee-c-CcccccccccchH
Confidence 66 333688999999999999999999975544332222111 1 1358899999999 5 34 99999998
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHHHHHHHhC---CcEEeeCCCCCeEEEEEc
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFK-EVLKPDFKIYQKQVVKNAKILSKILDQR---GIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~-~~l~~~~~~~~~~l~~~a~~l~~~L~~~---g~~~~~~~~~~~~v~i~~ 320 (1342)
+++.+.........+ +....+.+.+.... .....+++..++.+.++++.+.+.|.+. ++.+. .+.+++++|+++
T Consensus 260 ~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-~p~gg~~~~~~~ 337 (403)
T d1wsta1 260 LIRKMEIAKQSIDLC-TNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWT-KPEGGMFVRVTL 337 (403)
T ss_dssp HHHHHHHHHHHHHSS-CCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEC-CCSBSSEEEEEC
T ss_pred HHHHHHHHHhhhccc-cccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEe-CCCceeEEEEEC
Confidence 888776532222222 22333333222222 2223356677888888888888888873 56653 367789999999
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++..++..++..++ ++||.+.|+..++.... .++++|++++..
T Consensus 338 ~~~~~~~~~~~~l~-~~gV~v~pg~~f~~~~~--~~~~iRi~~~~~ 380 (403)
T d1wsta1 338 PEGIDTKLMMERAV-AKGVAYVPGEAFFVHRD--KKNTMRLNFTYV 380 (403)
T ss_dssp CTTCCTTTTHHHHH-HTTEECEEGGGGSTTCC--CCSEEEEECSSS
T ss_pred CCCCCHHHHHHHHH-HCCEEEEechhhcCCCC--CCCEEEEEecCC
Confidence 87655555555555 55999998765544321 246899998653
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.79 E-value=1.1e-17 Score=198.62 Aligned_cols=323 Identities=16% Similarity=0.164 Sum_probs=223.2
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc-
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV- 109 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al- 109 (1342)
.++..++|+.|++++.+.+.+.+ +++.+..+..+....++.+.+++.+++++|++ +.+++++++++++..++.++
T Consensus 28 ~a~~~~~p~~v~~~~~~~~~~~~--~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~ 105 (408)
T d1t3ia_ 28 NAATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWG 105 (408)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTH
T ss_pred CccccCCCHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhcc
Confidence 34567888899999999887554 34433323223333455566899999999986 56677768888888877663
Q ss_pred ---cCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEE-cCCCCC-cccCH
Q psy13354 110 ---LNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIA-GASAYS-QYIDF 183 (1342)
Q Consensus 110 ---~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~-~~s~~~-~~~~l 183 (1342)
..+||+|++.+.++++....+. .....|..+..+ +.+.++..+.+.++++++++ +++|.+ +.++.+ ...|+
T Consensus 106 ~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~--~~~~~~~~~~~~l~~~~~~~-t~lv~i~~~~~~tG~~~p~ 182 (408)
T d1t3ia_ 106 MNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFV--QLDEQESFDLEHFKTLLSEK-TKLVTVVHISNTLGCVNPA 182 (408)
T ss_dssp HHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEE--CBCTTSSBCHHHHHHHCCTT-EEEEEEESBCTTTCBBCCH
T ss_pred ccccCCCCEEEeecccchhhhhhhhhhhhccCceEeee--eccccccccHHHhhhccCCC-ceEEEEecccccccccCcH
Confidence 6799999999988887766554 345567755554 55667778999999988764 444444 344444 55699
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC----CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC----
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF---- 254 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~---- 254 (1342)
++|.++|+++|+++++|++|+.|.. +++ .+|++++|+|||+ ||.| |+++.+++..........
T Consensus 183 ~~i~~~~~~~g~~~ivDa~q~~g~~-------~id~~~~~~D~~~~s~hK~~-gp~G~g~l~v~~~~~~~~~p~~~g~~~ 254 (408)
T d1t3ia_ 183 EEIAQLAHQAGAKVLVDACQSAPHY-------PLDVQLIDCDWLVASGHKMC-APTGIGFLYGKEEILEAMPPFFGGGEM 254 (408)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTS-------CCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHHSCCCSCSTTS
T ss_pred HHHhhhhhccCceeeeccceecccc-------cccccccCCceEEecccccc-CCCCccccccchhhhhcCCceecCCcc
Confidence 9999999999999999999999877 444 3799999999997 8888 999999987765533211
Q ss_pred ----------------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCC----CCC
Q psy13354 255 ----------------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGG----TKS 313 (1342)
Q Consensus 255 ----------------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~----~~~ 313 (1342)
.+-.|+++.+..+++..++......+.+++.++..++.+++.+.+.+.+ +.+..+. ...
T Consensus 255 ~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (408)
T d1t3ia_ 255 IAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRA 334 (408)
T ss_dssp EEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBC
T ss_pred cccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcc
Confidence 1124677777788777776655555677788888889999999998864 5544321 123
Q ss_pred eEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCC-cc-cccccccccccccccc
Q psy13354 314 HIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEK-PY-FTSGIRLGSSAITTRG 370 (1342)
Q Consensus 314 ~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~-~~-~~~~lRi~~~~~~t~~ 370 (1342)
.++.+.++. .+.+.+...|+++||.++.+..-..+-. .+ ..+.+|+|++.++|.+
T Consensus 335 ~iv~f~~~~--~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~ 391 (408)
T d1t3ia_ 335 ALASFNVAG--LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKE 391 (408)
T ss_dssp SEEEEEETT--BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHH
T ss_pred eEEEEEeCC--CCHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHH
Confidence 456666654 2345555667788999875421000000 00 1346999999988853
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2e-18 Score=203.75 Aligned_cols=317 Identities=17% Similarity=0.118 Sum_probs=221.5
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~a 105 (1342)
+.+.+.+|+..+++.|+++|..... + .......++.+++++.+++++|.+ ..+++++|||.|++++
T Consensus 19 ~~~l~~pGP~~~~~~Vl~am~~~~i-----~-------HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~ 86 (388)
T d1h0ca_ 19 NQLLLGPGPSNLPPRIMAAGGLQMI-----G-------SMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAA 86 (388)
T ss_dssp CCEECSSSCCCCCHHHHHHHTCCCC-----C-------TTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred cCccccCCCCCCCHHHHHHhCcCCC-----C-------CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence 4577899999999999999753221 1 113345677778999999999997 3678888999999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCC-CC-cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASA-YS-QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~-~~-~~~~l 183 (1342)
+..++.+||++++....+.+.. ........+. ....+..+....+|.+.+++.+...+++++.++..+ .+ ...|+
T Consensus 87 i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi 163 (388)
T d1h0ca_ 87 LVNVLEPGDSFLVGANGIWGQR-AVDIGERIGA--RVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPL 163 (388)
T ss_dssp HHHHCCSSCCEEECBSSHHHHH-HHHHHHHHC----CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred HHHhhccCCceeeecccceeee-eccccccccc--cccccccCCccccchHHHHHHhccCCcceEEEeeeeeccccccCH
Confidence 9999999999997664433321 1222233343 334445555667899999888777677666655433 33 55599
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---------
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--------- 253 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--------- 253 (1342)
++|.++|++||+++++|++|+.|...-... .-.+|++++|.+||++||.| |+++.++...+.+....
T Consensus 164 ~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~---~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d1h0ca_ 164 DGFGELCHRYKCLLLVDSVASLGGTPLYMD---RQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLD 240 (388)
T ss_dssp TTHHHHHHTTTCEEEEECTTTTTTSCCCTT---TTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTC
T ss_pred HHHHHHhhcccccceecccccccccccccc---ccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccc
Confidence 999999999999999999999887622110 11369999999999988888 88888887666554321
Q ss_pred -------------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC---CCeEEE
Q psy13354 254 -------------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT---KSHIIL 317 (1342)
Q Consensus 254 -------------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~---~~~~v~ 317 (1342)
.....+++......++..++......+++...++..++..++++.+...|+....... ...++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~ 320 (388)
T d1h0ca_ 241 IKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTT 320 (388)
T ss_dssp HHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEE
T ss_pred cchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEE
Confidence 1222345666677777766666655567888888899999999999988876543221 124667
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccc-cccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLG-SSAITT 368 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~-~~~~~t 368 (1342)
+.+++..++.++...+++++||.+..+... +....+|+| ++..++
T Consensus 321 ~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~------~~~~~iRis~~g~~~t 366 (388)
T d1h0ca_ 321 VAVPAGYDWRDIVSYVIDHFDIEIMGGLGP------STGKVLRIGLLGCNAT 366 (388)
T ss_dssp EECCTTCCHHHHHHHHHHHHCEECEECCGG------GTTTEEEEECCGGGCS
T ss_pred EECCCCCCHHHHHHHHHhcCCEEEeCCchh------hcCCEEEEeCCCCCCC
Confidence 777765556788888888889998865322 113468998 555554
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=2.7e-18 Score=200.44 Aligned_cols=270 Identities=15% Similarity=0.150 Sum_probs=168.7
Q ss_pred CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcch----HHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC
Q psy13354 36 ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKF----IDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN 111 (1342)
Q Consensus 36 ~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~----~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~ 111 (1342)
.+.+++++++|+.+ |+.+|+...+...+.. ...+.+.+++.+++++|.+++++++ ||++|+.+++.++++
T Consensus 11 ~~~l~~~a~~a~~~-----~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~~~~t~-g~t~a~~~~~~al~~ 84 (364)
T d2e7ja1 11 GGKLTEEARQALLE-----WGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTN-GAREAKFAVMHSLAK 84 (364)
T ss_dssp TCCCCHHHHHHHHH-----C--------------------CCHHHHHHTHHHHHTTSSEEEEES-SHHHHHHHHHHHHCC
T ss_pred CCcCCHHHHHHHHH-----HhcCCchhccccccccccccChHHHHHHHHHHHHHhCcCEEEEEC-cHHHHHHHHHHHHhC
Confidence 35678888888654 3334433222111110 0123444556999999998877766 999999999999999
Q ss_pred CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCC----eEEEEcCCCCC--cccCHHH
Q psy13354 112 PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKP----KLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 112 pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~----~liv~~~s~~~--~~~~l~~ 185 (1342)
|||+|+++. +.|.+....+...|..+..++.....++.+|++++++.+++.+. .+++++.++++ ...|+++
T Consensus 85 ~gd~Vi~~~---~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~ 161 (364)
T d2e7ja1 85 KDAWVVMDE---NCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKK 161 (364)
T ss_dssp TTCEEEEET---TCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHH
T ss_pred CCcEEEeec---ccccccchHHHhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchh
Confidence 999999766 44555555567778866666544346788999999999976543 45555554444 5559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCccc-----
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPGIQ----- 258 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~~~----- 258 (1342)
|+++|++||+++++|++|+.|.+.. .... .+|++++|+||+++++.| |++++++++.+.+......+..
T Consensus 162 I~~ia~~~~i~livD~a~~~g~~~~----~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 237 (364)
T d2e7ja1 162 IAKVCSEYDVPLLVNGAYAIGRMPV----SLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVEL 237 (364)
T ss_dssp HHHHHHTTTCCEEEECTTTBTTBCC----CHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGG
T ss_pred heeccccccchhhccccchhhhhhh----cccccccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccCcccccc
Confidence 9999999999999999998776511 1111 379999999999955554 9999999877665433222211
Q ss_pred --cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeC-CCCCeEEEEEc
Q psy13354 259 --GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSG-GTKSHIILVDL 320 (1342)
Q Consensus 259 --~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~-~~~~~~v~i~~ 320 (1342)
++.......++..++.... +..+. ..+..++++++.+.|.+.|+..... +......++..
T Consensus 238 ~~~~~~~~~~~~~~~~l~~~~-~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 300 (364)
T d2e7ja1 238 LGCTARGATIITLMASFPHVR-ERIKR-WDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHA 300 (364)
T ss_dssp TTCCCCSHHHHHHHHHHHHHH-HHGGG-HHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEEC
T ss_pred cccccchhHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHcCCeecCCCCCCcceEEEec
Confidence 1111222222222222221 12222 2233567778999999999887652 23334444443
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=3.2e-18 Score=199.36 Aligned_cols=297 Identities=14% Similarity=0.138 Sum_probs=191.6
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
..+.|.+|+|+.+++. .+.+...++| |... ..+ +++++++++|.+ +.+++++|+++|+..++
T Consensus 28 ~~i~L~~ne~p~~~~~--~~~~~~l~rY----Pd~~-------~~~----Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~ 90 (354)
T d1fg7a_ 28 GDVWLNANEYPTAVEF--QLTQQTLNRY----PECQ-------PKA----VIENYAQYAGVKPEQVLVSRGADEGIELLI 90 (354)
T ss_dssp CSEECSSCCCSSCCCC--CCCCCCTTSC----CCSS-------CHH----HHHHHHHHHTSCGGGEEEESHHHHHHHHHH
T ss_pred CCEEeeCCCCCCCCCH--HHHHHHHhcC----CCCc-------HHH----HHHHHHHHhCCChHHeeeccCchHHHHHHH
Confidence 4588899998877641 1111111222 2211 124 445899999987 55555647777999999
Q ss_pred HHccCCCCE-EEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc--
Q psy13354 107 FSVLNPGDT-IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI-- 181 (1342)
Q Consensus 107 ~al~~pGD~-Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~-- 181 (1342)
.+++.|||. |+++++.++ .+.......|. .++.++.++++.+|++.++..+. +++++++++++|| ...
T Consensus 91 ~~~~~pgd~~Vl~~~P~y~---~~~~~~~~~g~--~v~~~~~~~~~~~d~~~l~~~~~--~~~~v~~~~pnNPtG~~~~~ 163 (354)
T d1fg7a_ 91 RAFCEPGKDAILYCPPTYG---MYSVSAETIGV--ECRTVPTLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINP 163 (354)
T ss_dssp HHHCCTTTCEEEECSSSCT---HHHHHHHHHTC--EEEECCCCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCH
T ss_pred HHhhccccccccccccccc---cchhhhhccCc--eeeccccccccccchhhhhhccc--ccceeeccCCCccceeEeee
Confidence 999999994 775554443 34444556666 55666777889999999987653 4678888888877 222
Q ss_pred -CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCC
Q psy13354 182 -DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 182 -~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~ 255 (1342)
.++.+.+.++ ++.++++||++......... ..... ...+++.||||+| |.+| ||+++++++++.+.....+
T Consensus 164 ~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~-~~~~~~~~~~iv~~S~SK~~-~laGlRiGy~i~~~~~i~~l~~~~~~ 240 (354)
T d1fg7a_ 164 QDFRTLLELTR-GKAIVVADEAYIEFCPQASL-AGWLAEYPHLAILRTLSKAF-ALAGLRCGFTLANEEVINLLMKVIAP 240 (354)
T ss_dssp HHHHHHHHHHT-TTCEEEEECTTGGGSGGGCS-GGGTTTCTTEEEEEESSSTT-CCGGGCCEEEEECHHHHHHHHHHSCS
T ss_pred ccccccccccc-ccccccccccchhhcccccc-chhhcccccceEEeCCcccc-CCCccccccccccchhhhhhhhhcCc
Confidence 3455555554 57788888877643322111 11111 1347789999999 7777 9999999999998876555
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
+..+ .+.+.+++.++......+.....+++.+.++++.+.+.+.+......+++++++|+++++ +.+++..+++
T Consensus 241 ~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~~---~~~~~~~L~~ 314 (354)
T d1fg7a_ 241 YPLS---TPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKA---SSAVFKSLWD 314 (354)
T ss_dssp SCSC---HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEETT---HHHHHHHHHH
T ss_pred cchh---hHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCCC---HHHHHHHHHH
Confidence 4433 334443333333222224555667788889999999999875322345778899999863 4466666655
Q ss_pred HCCceeeeccC-CCCCCCcccccccccccc
Q psy13354 336 SANIICNKNSI-PNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 336 ~~GI~v~~~~~-p~~~~~~~~~~~lRi~~~ 364 (1342)
+||.+.++.. ++. ++++|++++
T Consensus 315 -~gIlvr~~~~~~~~------~~~lRisig 337 (354)
T d1fg7a_ 315 -QGIILRDQNKQPSL------SGCLRITVG 337 (354)
T ss_dssp -TTEECEECTTSTTC------TTEEEEECC
T ss_pred -CCcEEecCCCCCCC------CCEEEEEeC
Confidence 5999987543 322 357999875
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.75 E-value=2.2e-17 Score=193.67 Aligned_cols=286 Identities=14% Similarity=0.136 Sum_probs=191.6
Q ss_pred CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCC
Q psy13354 36 ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGD 114 (1342)
Q Consensus 36 ~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD 114 (1342)
.+.++.+-++++.+.+... +++.++...++|+ .+++++|.+++++++ |||.|+..++.++ +++||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~---------~~~~G~~v~~~E~----~la~~~g~~~ai~~~-sgt~Al~~al~al~~~~gd 72 (376)
T d1mdoa_ 7 RPAMGAEELAAVKTVLDSG---------WITTGPKNQELEA----AFCRLTGNQYAVAVS-SATAGMHIALMALGIGEGD 72 (376)
T ss_dssp CCCCCHHHHHHHHHHHHHT---------CCSSSHHHHHHHH----HHHHHHCCSEEEEES-CHHHHHHHHHHHTTCCTTC
T ss_pred CCCCCHHHHHHHHHHHhcC---------CCcCCHHHHHHHH----HHHHHHCcCeEEEeC-CHHHHHHHHHHHhCCCCCC
Confidence 4566777677777777532 2344566677777 999999999888877 9999999999999 89999
Q ss_pred EEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHc
Q psy13354 115 TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNI 193 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~ 193 (1342)
+|++++..++ +...++...|. .++.++++ +++.+|++++++++++++..++++ +.++.+.++++|.++|++|
T Consensus 73 eVi~~~~~~~---~~~~ai~~~g~--~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~--h~~G~~~~~~~i~~i~~~~ 145 (376)
T d1mdoa_ 73 EVITPSMTWV---STLNMIVLLGA--NPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPV--HYAGAPADLDAIYALGERY 145 (376)
T ss_dssp EEEEESSSCH---HHHHHHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCTTEEEECCB--CGGGCCCCHHHHHHHHHHH
T ss_pred EEEEeccccc---ccccchhcccc--ceeeecccccccCCCHHHHHHhcCCCCeEEEEe--CCCCCccchhHHHHHHHhc
Confidence 9998886554 44555566666 56666776 568899999999998754444433 3455667999999999999
Q ss_pred CCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEec-hhHHHHhhccCCc----------------
Q psy13354 194 NSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK-KYKKIINSAVFPG---------------- 256 (1342)
Q Consensus 194 gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~-~l~~~l~~~~~~~---------------- 256 (1342)
|++||+|+||++|....+...+..+ ..++.+..+|.++++.||++++++ ++.+.++.....+
T Consensus 146 ~i~vIeD~a~a~g~~~~~~~~g~~g-~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 224 (376)
T d1mdoa_ 146 GIPVIEDAAHATGTSYKGRHIGARG-TAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQ 224 (376)
T ss_dssp TCCBCEECTTCTTCEETTEETTSSS-EEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------C
T ss_pred CceEEeccchhccCeeCCeeccccc-CccccCCCcCCCCCCCCCEEEEechhHHHHHHhhcccCCccccccccccccccc
Confidence 9999999999998776555444442 234444556999878889999887 4444443321111
Q ss_pred ------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC----C-eEEEEEcc--CC
Q psy13354 257 ------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK----S-HIILVDLR--NK 323 (1342)
Q Consensus 257 ------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~----~-~~v~i~~~--~~ 323 (1342)
.++..++...++...+.+. .+++..++.+++++++.+.|.+..+........ . +...+.+. ..
T Consensus 225 ~~~~~~g~n~~~~~~~Aai~~~qL~----~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (376)
T d1mdoa_ 225 AEVLAPGYKYNLPDLNAAIALAQLQ----KLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARC 300 (376)
T ss_dssp CEESSCCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHH
T ss_pred ccchhcccccccchhhhhhhhhhhh----hhhHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccccc
Confidence 1222334455555544433 445667788899999999998865443221111 1 12222222 12
Q ss_pred CCCHHHHHHHHHHCCceeeeccCC
Q psy13354 324 KITGKIAESILESANIICNKNSIP 347 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p 347 (1342)
..+.+.+...|+++||.+...+.|
T Consensus 301 ~~~Rd~l~~~L~~~gI~~~~~y~~ 324 (376)
T d1mdoa_ 301 GITRDALMASLKTKGIGTGLHFRA 324 (376)
T ss_dssp SSCHHHHHHHHHHTTBCCBCCCCC
T ss_pred hhhHHHHHHHHHHCCCCeeeECcc
Confidence 234455566667779998765444
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.74 E-value=6e-17 Score=188.51 Aligned_cols=303 Identities=11% Similarity=0.029 Sum_probs=185.8
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC-ceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA-ANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~-~vi~~~sGs~A~~ 103 (1342)
.+.|+|..|+|++ |+.+++++.+++. .. ..|+.. ...+|++ .+++++|.+. .+++++++++++.
T Consensus 22 ~~~idls~~~np~~~p~~~~~a~~~~~~-~~-~~Yp~~-------~~~~Lr~----aia~~~~v~~~~I~~~~g~~~~~~ 88 (355)
T d1lc5a_ 22 DQLLDFSANINPLGMPVSVKRALIDNLD-CI-ERYPDA-------DYFHLHQ----ALARHHQVPASWILAGNGETESIF 88 (355)
T ss_dssp GGSEECSSCCCTTCCCHHHHHHHHHTGG-GG-GSCCCT-------TCHHHHH----HHHHHHTSCGGGEEEESSHHHHHH
T ss_pred hheEEccCCCCCCCCCHHHHHHHHHHHH-Hh-ccCCCC-------ChHHHHH----HHHHHhCCCHHHEEecccHHHHHH
Confidence 3568888886654 4448888777653 22 123311 1235555 7888889884 3555535555666
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS----- 178 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~----- 178 (1342)
.++..+. |+.+++..+.++ .+.......+..+..++++.++++.++ +.+.+.+.+ +++++++++|++|
T Consensus 89 ~~~~~~~--~~~~~v~~p~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~-~~~~v~l~nP~NPtG~~~ 161 (355)
T d1lc5a_ 89 TVASGLK--PRRAMIVTPGFA---EYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTP-DLDCLFLCTPNNPTGLLP 161 (355)
T ss_dssp HHHHHHC--CSEEEEEESCCT---HHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCT-TCCEEEEESSCTTTCCCC
T ss_pred HHHhhhc--cccccccCCccc---eeccccccccccceeeeeeccCCccce-eeeeecccc-ccceeeeecccCcccccc
Confidence 6655554 333343333332 233444566776667766555556555 345555544 4566666676776
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechh-HHHHhhc
Q psy13354 179 QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKY-KKIINSA 252 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l-~~~l~~~ 252 (1342)
+..++++|+++|++|++++|+||+|............... ...+++.|+||++ |.+| ||++++++. ...++..
T Consensus 162 ~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~l~GlR~G~~i~~~~~~~~~~~~~ 240 (355)
T d1lc5a_ 162 ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY-AIPGLRLGYLVNSDDAAMARMRRQ 240 (355)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTT-TCTTTCCEEEECCCHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeeccccccc-ccccccccceeccchhhhHHHHhh
Confidence 2225889999999999999999998754332221111111 1358899999999 6566 999998754 4555543
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
..++. .+.+.+.++..++. . ..++...+++++++++++.+.|.+. ++.+ .+.+++++|++++.. +.+++.
T Consensus 241 ~~~~~---~~~~~~~~a~~~l~-~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~p~~~~f~~~~~~~~--~~~~~~ 311 (355)
T d1lc5a_ 241 QMPWS---VNALAALAGEVALQ-D-SAWQQATWHWLREEGARFYQALCQLPLLTV--YPGRANYLLLRCERE--DIDLQR 311 (355)
T ss_dssp SCTTC---SCHHHHHHHHHGGG-C-HHHHHHHHHHHHHHHHHHHHHHHTSTTEEE--CCCSSSEEEEEESCT--TCCHHH
T ss_pred cCCcc---cccccccccccccc-c-cchhHHHHHHHHHHHHHHHHHHhhcCCcEE--CCCCCEEEEEECCCC--HHHHHH
Confidence 33322 22334444333332 2 2366777888999999999999986 5665 346788999998753 345666
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.++ ++||.+.++..+.... ++++|++++
T Consensus 312 ~L~-~~gv~vr~~~~f~~~~----~~~iRis~~ 339 (355)
T d1lc5a_ 312 RLL-TQRILIRSCANYPGLD----SRYYRVAIR 339 (355)
T ss_dssp HHH-TTTEECEECTTSTTCC----TTEEEEECC
T ss_pred HHH-HCCcEEEeCccCCCCC----CCEEEEEeC
Confidence 665 5599998865432221 357999875
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=1.5e-16 Score=186.57 Aligned_cols=323 Identities=17% Similarity=0.169 Sum_probs=207.0
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHH---
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFS--- 108 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~a--- 108 (1342)
.++..++|+.|++++.+.+.+.+ +++.+.+.. .....+..+++++.+++++|++ +.+++++|+|+++..++.+
T Consensus 7 ~a~~~~~p~~v~ea~~~~~~~~~--~np~~~~~~-~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~ 83 (376)
T d1eg5a_ 7 NNATTRVDDRVLEEMIVFYREKY--GNPNSAHGM-GIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAE 83 (376)
T ss_dssp TTTCCCCCHHHHHHHHHHHHTCC--CCTTCSSHH-HHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred CcccccCCHHHHHHHHHHHHHcC--CCCccccHH-HHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccc
Confidence 35677888999999999887654 445433322 2334445556889999999998 5666776999999888764
Q ss_pred -ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHH
Q psy13354 109 -VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERF 186 (1342)
Q Consensus 109 -l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I 186 (1342)
...+|+.|++....++.....+..++..|. +++.+|+++++.+|++++++++++++..+++.+.++.+ ...+++++
T Consensus 84 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~--~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i 161 (376)
T d1eg5a_ 84 TFEKRKRTIITTPIEHKAVLETMKYLSMKGF--KVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDV 161 (376)
T ss_dssp HTTTTCCEEEECTTSCHHHHHHHHHHHHTTC--EEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHH
T ss_pred cccccCcccccccccchhhHHHHHHHHhcCC--EEEEEcCCCCCeECHHHHHHhcCCCceEEEEECCccccceeeeehhh
Confidence 357888888777777666666666677777 55556777889999999999998755444444444444 44599999
Q ss_pred HHHHHHc--CCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC------Ccc
Q psy13354 187 YHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------PGI 257 (1342)
Q Consensus 187 ~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------~~~ 257 (1342)
.++|+.+ |+++++|++|++|....... ...+|++++|+|||+ ||.| |+++.+++.. +++... .+.
T Consensus 162 ~~~~~~~~~~~~~~vD~~q~~g~~~~d~~---~~~~D~~~~s~~K~~-gp~G~~~l~~~~~~~--~~p~~~g~~~~~~~~ 235 (376)
T d1eg5a_ 162 TRIVKKKNKETLVHVDAVQTIGKIPFSLE---KLEVDYASFSAHKFH-GPKGVGITYIRKGVP--IRPLIHGGGQERGLR 235 (376)
T ss_dssp HHHHHHHCTTCEEEEECTTTTTTSCCCCT---TTCCSEEEEEGGGGT-SCTTCEEEEECTTSC--CCCSBCSSCTTTTTB
T ss_pred hhhhhhcccCceeEEEeeecccccccccc---ccCccceecccceee-cCCCceeEEeccCcc--cCCcccCCCCccccc
Confidence 9998666 89999999999887622110 113699999999998 8888 8888877531 222111 111
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC--CeEEEEEccCCCCCHHHHHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK--SHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~--~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
.+..+.....++..+.... ................++.+.|...+......... .....+.++. ...+.+...|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~ 312 (376)
T d1eg5a_ 236 SGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPN--IRGSTLQNLLS 312 (376)
T ss_dssp CSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTT--CCHHHHHHHHH
T ss_pred CCcccchhhhhHHHHhhcc-ccchhhhhhhhhhhhhhhccccccccccccccccccccceeeeccCC--CCHHHHHHHHh
Confidence 2333334444333333222 22444556666777788888888766555432221 2334444433 34566777788
Q ss_pred HCCceeeeccC--CCCCC--------C---ccccccccccccccccc
Q psy13354 336 SANIICNKNSI--PNDPE--------K---PYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 336 ~~GI~v~~~~~--p~~~~--------~---~~~~~~lRi~~~~~~t~ 369 (1342)
++||.++++.. +.... + ....+.+|+|++.++|.
T Consensus 313 ~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~ 359 (376)
T d1eg5a_ 313 GYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359 (376)
T ss_dssp HTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCH
T ss_pred hCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCH
Confidence 88999875421 11100 0 01124689999988773
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.73 E-value=2.5e-17 Score=192.48 Aligned_cols=283 Identities=17% Similarity=0.133 Sum_probs=172.5
Q ss_pred HHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCC
Q psy13354 76 KIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKI 153 (1342)
Q Consensus 76 ~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~i 153 (1342)
..+++...++++.+ +.++++++|++|+..++.++. +||.|++.+ ..++|.+....+...|. +++ +.+
T Consensus 53 ~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~-~~~~vi~~~-~~~~~~~~~~~~~l~g~--~~v--~~~----- 121 (366)
T d2aeua1 53 EKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK-PKKVIHYLP-ELPGHPSIERSCKIVNA--KYF--ESD----- 121 (366)
T ss_dssp HHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC-CSEEEEECS-SSSCCTHHHHHHHHTTC--EEE--EES-----
T ss_pred HHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC-CCCEEEEec-CCCcchhHHHHHHhcCC--eEE--CCC-----
Confidence 33444666777655 334444499999999999875 566655422 23456666666677776 444 333
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCC-C--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCc
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAY-S--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHK 229 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~-~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK 229 (1342)
|++++++++++. .++|+++.+++ + ...++++|+++|++||+++++|++|+.+.+.....+.+.. .+|++++|+||
T Consensus 122 d~e~l~~~i~~~-tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK 200 (366)
T d2aeua1 122 KVGEILNKIDKD-TLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDK 200 (366)
T ss_dssp CHHHHHTTCCTT-EEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTS
T ss_pred CHHHHHHhcCCC-ceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEecccc
Confidence 899999988764 45666655444 3 2347999999999999999999999987765443333322 37999999999
Q ss_pred cCCCCCeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-----CCc
Q psy13354 230 SLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-----RGI 304 (1342)
Q Consensus 230 ~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-----~g~ 304 (1342)
+++|+.+||+++++++++.++........+ ...+.+.++..++.......+++..++..+.+..+.+.+.. .++
T Consensus 201 ~~~g~~~G~i~~~~~~i~~~~~~~~~~g~~-~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 279 (366)
T d2aeua1 201 LMEGPRGGLLAGKKELVDKIYIEGTKFGLE-AQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDN 279 (366)
T ss_dssp SSSSCSCEEEEEEHHHHHHHHHHHHTTTCB-CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTT
T ss_pred cccccceeEEEecHHHHHHHHHHHhccccc-CCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 998787899999999999887654333222 22344444444443221111121112211111122222221 122
Q ss_pred E-EeeCCCCCeEEEEEccCCC-----CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhH
Q psy13354 305 R-IVSGGTKSHIILVDLRNKK-----ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEI 376 (1342)
Q Consensus 305 ~-~~~~~~~~~~v~i~~~~~~-----~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~ 376 (1342)
. ....+...+++|....... .+.+++..+++++||.+.|.. +.|.. .+++|++++..++..+..+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~--~~p~~---~~~lRis~~~~~~~~i~~d~l 352 (366)
T d2aeua1 280 INIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVA--GMPGA---SKSLRIDLTSRDAERIDDNYI 352 (366)
T ss_dssp EEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTS--SSCSS---CCSEEEETTSGGGGGSCHHHH
T ss_pred cCcccccCccchhccCCCcceeecccCHHHHHHHHHHhCCEEEEECC--CCCCC---CCEEEEeccccchhhCCHHHH
Confidence 1 1112344566665544321 244688889999999876542 22222 567999999877766555444
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.73 E-value=1.2e-16 Score=188.20 Aligned_cols=317 Identities=15% Similarity=0.086 Sum_probs=210.5
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~a 105 (1342)
+.+.+.+|+..+++.|++||.....+ .......++.+++++.+++++|.+ .++++++|||.+++++
T Consensus 17 ~~~l~~PGP~~~~~~V~~Am~~~~~~------------hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~ 84 (388)
T d2ch1a1 17 EKIMMGPGPSNCSKRVLTAMTNTVLS------------NFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAM 84 (388)
T ss_dssp CCBCCSSSSCCCCHHHHHHTTSCCCC------------TTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHH
T ss_pred cceeeeCCCCCCCHHHHHHhCcCCCC------------CCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHH
Confidence 45668999999999999996433211 113445577788999999999987 5677888999999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC-CCCC-cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA-SAYS-QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~-s~~~-~~~~l 183 (1342)
+..++.+|+++++....+.+.. ........+.....+ ...+....+.+.++......+++++.++. ++.+ ...++
T Consensus 85 ~~~l~~~~~~vl~~~~g~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~ 161 (388)
T d2ch1a1 85 LSNLLEEGDRVLIAVNGIWAER-AVEMSERYGADVRTI--EGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPL 161 (388)
T ss_dssp HHHHCCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEE--ECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred HHHhcccccccccccccccccc-chhhhhhhccccccc--ccccccccchhhhhhhhccCCcceeeeeecccccccccch
Confidence 9999999999997663332221 122344555544444 44444456788888777766777766644 3333 55599
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---------
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--------- 253 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--------- 253 (1342)
++|+++|+++|+++++|++++.|...-+. ..-.+|++++|.+|+++||.| |+++.++...+.+....
T Consensus 162 ~~i~~~~~~~~~~~~vD~~ss~g~~pid~---~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (388)
T d2ch1a1 162 EGVGQICHQHDCLLIVDAVASLCGVPFYM---DKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWD 238 (388)
T ss_dssp TTHHHHHHHTTCEEEEECTTTBTTBCCCT---TTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred hhhcchhccccceeeeeeeecccccccch---hccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCcccccccc
Confidence 99999999999999999999887651110 001379999999999988999 99888887665543211
Q ss_pred -------------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC---CCeEEE
Q psy13354 254 -------------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT---KSHIIL 317 (1342)
Q Consensus 254 -------------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~---~~~~v~ 317 (1342)
.....+++......++..++.............+...........+...++....... ...++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~ 318 (388)
T d2ch1a1 239 LLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTG 318 (388)
T ss_dssp HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEE
T ss_pred chhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEE
Confidence 1122345556666666666655544455555666666666677777665554433111 123667
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccc-cccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLG-SSAITT 368 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~-~~~~~t 368 (1342)
+.+++.....++...+++++||.+.++..+ +..+.+|+| ++..++
T Consensus 319 ~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~------~~~~~~RIs~~g~~~t 364 (388)
T d2ch1a1 319 IMIPKGVDWWKVSQYAMNNFSLEVQGGLGP------TFGKAWRVGIMGECST 364 (388)
T ss_dssp EECCTTCCHHHHHHHHHHHHCBCCBCCCGG------GTTTEEEEECCGGGCS
T ss_pred EECCCCCCHHHHHHHHhhcCCEEEeCCCcc------ccCCEEEEcCCcCCCC
Confidence 778765555677788888889998864221 123458999 455544
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.72 E-value=5.2e-16 Score=181.71 Aligned_cols=317 Identities=13% Similarity=0.075 Sum_probs=212.2
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~a 105 (1342)
+.+.+.+|+..+++.|++||..... + .......++.+.+++.+++++|++ .++++++|||.+++++
T Consensus 18 ~~~l~~PGP~~v~~~Vl~am~~~~~-----~-------hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~ 85 (377)
T d1vjoa_ 18 SRLLLGPGPSNAHPSVLQAMNVSPV-----G-------HLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEAT 85 (377)
T ss_dssp CCEECSSSCCCCCHHHHHHHSSCCC-----C-------TTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhCcCCC-----C-------CCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHH
Confidence 3466889999999999998753221 1 113445577778999999999986 5778888999999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC-CCCC-cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA-SAYS-QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~-s~~~-~~~~l 183 (1342)
+..++.+|+++++....+.... ........+........+ .+...+.+..+....+..++++.++. ++.+ ...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i 162 (377)
T d1vjoa_ 86 IANAVEPGDVVLIGVAGYFGNR-LVDMAGRYGADVRTISKP--WGEVFSLEELRTALETHRPAILALVHAETSTGARQPL 162 (377)
T ss_dssp HHHHCCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred HHhccccccccceeeechhhhh-hhhhhhhhcccccccccC--CCCcccchhhhhhhhcCcceeeeeeeeeccceeeech
Confidence 9999999999998765544332 222334445533444333 33334666666655555566555544 3333 55599
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCC-------
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFP------- 255 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~------- 255 (1342)
++|.++|+++|+++++|++|+.|...-.. ..-.+|++++|.+|+++||.| |+++.++...+.......+
T Consensus 163 ~~i~~~~~~~g~~~~vDa~~~~g~~~~~~---~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (377)
T d1vjoa_ 163 EGVGELCREFGTLLLVDTVTSLGGVPIFL---DAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLD 239 (377)
T ss_dssp TTHHHHHHHHTCEEEEECTTTTTTSCCCT---TTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTC
T ss_pred hhhhhhhhhccceEEEecchhhhhhhhcc---cccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeec
Confidence 99999999999999999999887662111 111368999999999988888 8888887766655432211
Q ss_pred ------------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC--CCeEEEEEcc
Q psy13354 256 ------------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT--KSHIILVDLR 321 (1342)
Q Consensus 256 ------------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~--~~~~v~i~~~ 321 (1342)
+..+++......++..+.......+.+...++..++..++.+.+...++....++. ...++.+.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p 319 (377)
T d1vjoa_ 240 MNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIP 319 (377)
T ss_dssp HHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECC
T ss_pred cchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecChHhcCCeEEEEECC
Confidence 12234444555555555555545567778888899999999999998876544221 1235567776
Q ss_pred CCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccc-ccccc
Q psy13354 322 NKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGS-SAITT 368 (1342)
Q Consensus 322 ~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~-~~~~t 368 (1342)
+...+.++...+++++||.+..+..+ ...+.+|+|+ +..++
T Consensus 320 ~~~~~~~l~~~L~~~~gI~v~~G~~~------~~~~~~Ris~~g~~~t 361 (377)
T d1vjoa_ 320 DGVDGKAVARRLLNEHNIEVGGGLGE------LAGKVWRVGLMGFNSR 361 (377)
T ss_dssp TTCCHHHHHHHHHHHHCEECEECCGG------GTTTEEEEECCGGGCS
T ss_pred CCCCHHHHHHHHHhcCCEEEecCccc------ccCCEEEEecCcCCCC
Confidence 55556677788888889998765322 1234699985 44443
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=1.7e-16 Score=183.06 Aligned_cols=293 Identities=12% Similarity=0.075 Sum_probs=182.8
Q ss_pred cCceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
++.+.|..|+|+.++ .+.+++.+.+..... .+| +..+..+|++++++++... +.+ +.+++++|+++++.
T Consensus 19 ~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~------~~y-p~~g~~~Lr~aia~~~~~~-~v~~d~I~it~G~~~~l~ 90 (334)
T d2f8ja1 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSDAL------RIY-YDSPDEELIEKILSYLDTD-FLSKNNVSVGNGADEIIY 90 (334)
T ss_dssp CCSEECSSCCCSSCCCHHHHHHHHHHCCTTGG------GSC-CCSSCHHHHHHHHHHHTCS-SCCGGGEEEEEHHHHHHH
T ss_pred CCceEEECCCCCCCCCHHHHHHHHHHhhcchh------cCC-CCCCcHHHHHHHHHHhccc-CCCcceEEecCcchhHHH
Confidence 466888888875444 488888777743221 222 2233456777444443322 222 44555535555777
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.+++ +||+|++.++.++ .+.......|. ++++++.++++..+. . ...+.+++++++++|| ...
T Consensus 91 ~l~~----~~d~v~i~~P~y~---~~~~~~~~~g~--~~v~v~~~~~~~~~~-----~-~~~~~~~l~l~nP~NPtG~~~ 155 (334)
T d2f8ja1 91 VMML----MFDRSVFFPPTYS---CYRIFAKAVGA--KFLEVPLTKDLRIPE-----V-NVGEGDVVFIPNPNNPTGHVF 155 (334)
T ss_dssp HHHH----HSSEEEECSSCCH---HHHHHHHHHTC--CEEECCCCTTSCCCC-----C-CCCTTEEEEEESSCTTTCCCC
T ss_pred HHhh----hcccccccccccc---ccccchhccCC--ccccccccccccccc-----c-ccccceEEEecccccccceee
Confidence 6554 5799997765444 44455566676 666667765554331 1 1235677777777777 334
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccc
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQ 258 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~ 258 (1342)
+.++|.+++ ++++++|+|+++..................++++|+||++ +..| ||+++++++++.+......+.
T Consensus 156 s~~~l~~~~-~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~~~~~~~~i~~l~~~~~~~~- 232 (334)
T d2f8ja1 156 EREEIERIL-KTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAF-SLAAQRVGYVVASEKFIDAYNRVRLPFN- 232 (334)
T ss_dssp CHHHHHHHH-TTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTS-SCTTTCEEEEEECHHHHHHHHHHSCTTC-
T ss_pred cHHHhhccc-cceeEEeecccchhhcccccccccccCceEEEEecCcccc-chhhhhhhhcccchHHHHHHHHhhcccc-
Confidence 777777654 5789999999875432211111111111348899999998 5566 999999999999877544332
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCC
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESAN 338 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~G 338 (1342)
.+.+.+.++. +..... ++++..++.+.++++++.+.|++.|+++.. +.++++|+.++.. +..++++.++ ++|
T Consensus 233 --~s~~~~~~a~-~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~--~~g~f~~~~~~~~-~~~~~~~~L~-~~G 304 (334)
T d2f8ja1 233 --VSYVSQMFAK-VALDHR-EIFEERTKFIVEERERMKSALREMGYRITD--SRGNFVFVFMEKE-EKERLLEHLR-TKN 304 (334)
T ss_dssp --SCHHHHHHHH-HHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHTCEECC--CCSSEEEEECCHH-HHHHHHHHHH-HTT
T ss_pred --cchhhhhhcc-cccccc-cchhhHHHHHHHHHHHHHHHHHHCCCeECC--CCceEEEEECCCC-CHHHHHHHHH-HCC
Confidence 2234444433 333333 477788899999999999999999998753 3456788887654 3445555554 569
Q ss_pred ceeeeccCCCCCCCcccccccccccc
Q psy13354 339 IICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 339 I~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
|.++++ ++++|++++
T Consensus 305 I~vr~~-----------~~~vRis~g 319 (334)
T d2f8ja1 305 VAVRSF-----------REGVRITIG 319 (334)
T ss_dssp EECEEE-----------TTEEEEECC
T ss_pred CEECCC-----------CCeEEEEcC
Confidence 998753 357999975
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.70 E-value=3.7e-16 Score=183.53 Aligned_cols=294 Identities=12% Similarity=0.055 Sum_probs=196.3
Q ss_pred eeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-c
Q psy13354 32 LIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-L 110 (1342)
Q Consensus 32 l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~ 110 (1342)
.++..+.++.+-++++.+.+... ..++.+++....+|+ ++++++|.++++.++ |||.|++++++++ +
T Consensus 4 ~~~~~p~~~~~~~~~~~~~l~~g-------~~~~~~g~~v~~fE~----~~a~~~g~~~~v~~~-SGt~Al~lal~~l~~ 71 (384)
T d1b9ha_ 4 EFPAWPQYDDAERNGLVRALEQG-------QWWRMGGDEVNSFER----EFAAHHGAAHALAVT-NGTHALELALQVMGV 71 (384)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHTS-------CCBTTTCSHHHHHHH----HHHHHTTCSEEEEES-CHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHcC-------CeeecCCHHHHHHHH----HHHHHHCcCeEEEeC-CHHHHHHHHHHHcCC
Confidence 34555566666677777777421 112345667777877 999999999998888 9999999999998 7
Q ss_pred CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHH
Q psy13354 111 NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHI 189 (1342)
Q Consensus 111 ~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~l 189 (1342)
++||+|++++..+++ ...++...|. .++.++.+ .++.+|++.+++.+++.+..++++ +.++...++++|.++
T Consensus 72 ~~gdeVi~p~~t~~a---~~~ai~~~g~--~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~~--~~~g~~~d~~~i~~~ 144 (384)
T d1b9ha_ 72 GPGTEVIVPAFTFIS---SSQAAQRLGA--VTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPV--HMAGLMADMDALAKI 144 (384)
T ss_dssp CTTCEEEEESSSCTH---HHHHHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCTTEEEECCB--CGGGCCCCHHHHHHH
T ss_pred CCCCEEEEecccccc---cccccccccc--ccccccccccccccchhhhcccccccccccccc--cccccccccccchhh
Confidence 999999988866654 3445556666 56666666 568899999999887654443333 344466799999999
Q ss_pred HHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEec-hhHHHHhhccCC-------------
Q psy13354 190 AKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK-KYKKIINSAVFP------------- 255 (1342)
Q Consensus 190 a~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~-~l~~~l~~~~~~------------- 255 (1342)
|+++|++||+|++|++|....+...+.+....++.++.+|.++++.||++++++ ++.+.++.....
T Consensus 145 ~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 224 (384)
T d1b9ha_ 145 SADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFH 224 (384)
T ss_dssp HHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCC
T ss_pred hhhhhhhhhhhhceecccccCCEecCcccccceecccccccccccccchhhhhhHHHHHHHHHHHhcCCCCccccccccc
Confidence 999999999999999988776665555543445555567999878889988875 555544322110
Q ss_pred --ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCC-----CCCeEEEEEccCCC-CC
Q psy13354 256 --GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGG-----TKSHIILVDLRNKK-IT 326 (1342)
Q Consensus 256 --~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~-----~~~~~v~i~~~~~~-~~ 326 (1342)
..++.-++..++|.....++ .+++..++.+++++++.+.|.+. ++.....+ ...++..+.++... ..
T Consensus 225 ~~~G~n~rms~l~Aaig~~qL~----~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (384)
T d1b9ha_ 225 KIAGSNMRLNEFSASVLRAQLA----RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEER 300 (384)
T ss_dssp CSCCCBCBCBHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHH
T ss_pred cccccccccccchhhhhhhhhh----hcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceeccccccc
Confidence 01122234555555444332 55667778888999999999874 44433211 11233444454322 12
Q ss_pred HHHHHHHHHHCCceeeeccCCC
Q psy13354 327 GKIAESILESANIICNKNSIPN 348 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~ 348 (1342)
.+.+...|+++||.+...+.|.
T Consensus 301 Rd~l~~~L~~~GI~~~~~y~pl 322 (384)
T d1b9ha_ 301 RNALVDRLVEAGLPAFAAFRAI 322 (384)
T ss_dssp HHHHHHHHHHTTCCEEECCCCG
T ss_pred HHHHHHHHHHCCCCeeeeCcch
Confidence 3445555667799998775543
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.70 E-value=2.2e-16 Score=186.91 Aligned_cols=313 Identities=11% Similarity=0.077 Sum_probs=203.5
Q ss_pred Cceeeeec----CC---CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---Cce-EecC
Q psy13354 28 NNIELIAS----EN---YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AAN-VQPH 96 (1342)
Q Consensus 28 ~~i~l~a~----~n---~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~v-i~~~ 96 (1342)
+.|+|..| ++ +..+.|.+|+.....+.. ...|+...+..+|++++.+++.+..+.. +.+ ++.+
T Consensus 29 ~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~------~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~ 102 (401)
T d7aata_ 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKM------DKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQG 102 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTC------CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCC------CCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEecc
Confidence 45888877 22 334568888666654221 2346677778899998888887765532 333 3322
Q ss_pred CHH----HHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh--cCCeEE
Q psy13354 97 SGS----QANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK--NKPKLI 170 (1342)
Q Consensus 97 sGs----~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~--~~~~li 170 (1342)
+++ .++..+++++++|||+|+++++.++.+ ...+...|..+..+++..++++.++.+.+.+.+.. .+.+++
T Consensus 103 ~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 179 (401)
T d7aata_ 103 ISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNH---TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIIL 179 (401)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTH---HHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEE
T ss_pred chHHHHHHHHHHhhHhhcCCCceEEEecCCCcch---hhHHHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEE
Confidence 222 356667788899999999888666554 44556778755555554456677899998887754 345677
Q ss_pred EEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC-------CCCCcEEEecCCccCCCCCe--
Q psy13354 171 IAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP-------VPFADFITSTTHKSLRGPRG-- 236 (1342)
Q Consensus 171 v~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~-------l~~~Divv~S~sK~l~gp~G-- 236 (1342)
++++++|| +...+++|+++|++|+++||+|++|....+........ .....+++.|+||.+ +..|
T Consensus 180 ii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R 258 (401)
T d7aata_ 180 LHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM-GLYGER 258 (401)
T ss_dssp EESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGC
T ss_pred EecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccc-eeeccc
Confidence 77777777 33378999999999999999999997654422110000 001236778999999 7777
Q ss_pred -eEEEEechhHHHHhhcc------CCccccCCcHHHHHHHHHHHHH-----hccchHHHHHHHHHHHHHHHHHHHHhCCc
Q psy13354 237 -GFILMKKKYKKIINSAV------FPGIQGGPLMHVIAAKAVAFKE-----VLKPDFKIYQKQVVKNAKILSKILDQRGI 304 (1342)
Q Consensus 237 -G~iv~~~~l~~~l~~~~------~~~~~~~~~~~~~~Aaa~al~~-----~l~~~~~~~~~~l~~~a~~l~~~L~~~g~ 304 (1342)
||++++.++.+.+.... ....+.++....+.+++..+.+ ....+.+.+++++.++++.+.+.|++.+.
T Consensus 259 iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 338 (401)
T d7aata_ 259 AGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGS 338 (401)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999987665543211 1112233334444433333221 12235667788889999999999998764
Q ss_pred EEe---eCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 305 RIV---SGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 305 ~~~---~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
... ..+.+++|+|+.+ +.+++.+|++++||++.++ .|++++..++.
T Consensus 339 ~~~~~~~~~~~G~F~~~~l-----s~e~~~~L~~e~gV~~~pg--------------~Ris~a~~~~~ 387 (401)
T d7aata_ 339 SHNWQHITDQIGMFCFTGL-----KPEQVERLTKEFSIYMTKD--------------GRISVAGVASS 387 (401)
T ss_dssp CSCCHHHHHCCSSEEECCC-----CHHHHHHHHHHHCEECCTT--------------CEEEGGGCCTT
T ss_pred CCCcceECCCCeEEEecCC-----CHHHHHHHHHhCCEEECCC--------------cEEEeccCCHH
Confidence 211 1346678888643 4678999999999988642 59998876554
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.70 E-value=4.6e-16 Score=181.15 Aligned_cols=315 Identities=16% Similarity=0.094 Sum_probs=194.5
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC---ceEecCCHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA---ANVQPHSGSQANQAVF 106 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~---~vi~~~sGs~A~~~al 106 (1342)
+.+.+++..+++.|++||.....++ ..+...++.+.+++.+++++|+++ ++++++|||.++..++
T Consensus 2 ~l~~pGP~~~~~~V~~A~~~~~~~~------------~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~ 69 (361)
T d1m32a_ 2 LLLTPGPLTTSRTVKEAMLFDSCTW------------DDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVL 69 (361)
T ss_dssp EECSSSSCCCCHHHHHTTCCCCCTT------------SHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhhhhccCC------------CcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHH
Confidence 4577888889999988865332111 112223455668889999999962 3667779999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC-CCCC-cccCHH
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA-SAYS-QYIDFE 184 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~-s~~~-~~~~l~ 184 (1342)
..+..+++.+++....+... .........+.....+..+.......+.+.......+ +++++.++. ++.+ ...|++
T Consensus 70 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~tG~~~~i~ 147 (361)
T d1m32a_ 70 GSALGPQDKVLIVSNGAYGA-RMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADP-TISHIAMVHSETTTGMLNPID 147 (361)
T ss_dssp HHSCCTTCCEEEEESSHHHH-HHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCT-TCCEEEEESEETTTTEECCHH
T ss_pred HHhhhhccccceeeehhhhh-hHHHHhhhhhcccccccccccCCccchhhHHHHHhcc-CccceEEEeeecccccchhhh
Confidence 99998888887655332221 1222233334433444333332222223333333333 445544433 3333 555999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc----------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV---------- 253 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~---------- 253 (1342)
+|+++|++||+++++|++|+.|...-+.. .-.+|++++|.|||++||.| |+++.+++..+......
T Consensus 148 ~i~~~~~~~g~~~~vDa~qs~G~~~~d~~---~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (361)
T d1m32a_ 148 EVGALAHRYGKTYIVDAMSSFGGIPMDIA---ALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQ 224 (361)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTSCCCTT---TTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHH
T ss_pred hhhhhhcccceeeEeecccccCccccccc---ccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhh
Confidence 99999999999999999999987621110 11379999999999989999 99999986554433221
Q ss_pred -------CCccccCCcHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHhCCcEEeeCC--CCCeEEEEEccCC
Q psy13354 254 -------FPGIQGGPLMHVIAAKAVAFKEVLKPD-FKIYQKQVVKNAKILSKILDQRGIRIVSGG--TKSHIILVDLRNK 323 (1342)
Q Consensus 254 -------~~~~~~~~~~~~~~Aaa~al~~~l~~~-~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~--~~~~~v~i~~~~~ 323 (1342)
.....+++......++..++.....++ ......+..+.++.+.+.++..|+.+...+ ....++.+.+++.
T Consensus 225 ~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~ 304 (361)
T d1m32a_ 225 WRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPED 304 (361)
T ss_dssp HHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCC
T ss_pred hccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCC
Confidence 122234555666666666666555433 445556777888888899988887654321 1223555666542
Q ss_pred -CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 324 -KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 324 -~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
......+...|.++||.+.++.. ...+.+|+|+..+++
T Consensus 305 ~~~~~~~~~~~l~~~gi~i~~G~~-------~~~~~~Ris~~g~~~ 343 (361)
T d1m32a_ 305 PQYRFSEFYRRLKEQGFVIYPGKV-------SQSDCFRIGNIGEVY 343 (361)
T ss_dssp TTCCHHHHHHHHHHTTEECEECCC-------SSSCEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHHCCcEEECCCc-------CCCCEEEEeCCCCCC
Confidence 33444455555666999875421 113568998654443
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=4e-16 Score=183.29 Aligned_cols=303 Identities=15% Similarity=0.127 Sum_probs=205.0
Q ss_pred eeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC----C-CceEecCCHHHHHHHHH
Q psy13354 32 LIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA----E-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 32 l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~----~-~~vi~~~sGs~A~~~al 106 (1342)
+.+++..+++.|++||..... .++ .+...++.+.+.+.+++.++. + +++++++|||.|+++++
T Consensus 7 ~~PGP~~v~~~V~~Am~~~~~----------~hr--~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~ 74 (382)
T d2bkwa1 7 LIPGPIILSGAVQKALDVPSL----------GHT--SPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFA 74 (382)
T ss_dssp CSSSSCCCCHHHHHTTSCCCC----------CTT--SHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHH
T ss_pred cCCCCCCCCHHHHHHhCcccC----------CCC--cHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHH
Confidence 788999999999988642211 111 223445556677778888774 2 56788889999999999
Q ss_pred HHcc---CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC--Cccc
Q psy13354 107 FSVL---NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY--SQYI 181 (1342)
Q Consensus 107 ~al~---~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~--~~~~ 181 (1342)
.+++ .|||+|++....+.+.. ........+.....+. ..+.....+.+.+++.+...++++++++..++ ....
T Consensus 75 ~~l~~~~~~gd~vlv~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~ 152 (382)
T d2bkwa1 75 SNFILSKAPNKNVLVVSTGTFSDR-FADCLRSYGAQVDVVR-PLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLS 152 (382)
T ss_dssp HHHSCTTCSCCEEEEECSSHHHHH-HHHHHHHTTCEEEEEC-CSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEEC
T ss_pred HHHHHhcCCCCceEEEEechhhhh-hhhhcccccccccccc-ccCCCCccchhHHHHHhhhccchheeeeeccccccccc
Confidence 9985 68999997664332221 2223445565444442 22233456888998888877777766554333 3555
Q ss_pred CHHHHHHHHHHcC--CEEEEEcccchhhhhcCCCCCCCC----CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc--
Q psy13354 182 DFERFYHIAKNIN--SYFMVDMAHYAGLIAAGEYPNPVP----FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA-- 252 (1342)
Q Consensus 182 ~l~~I~~la~~~g--i~LIvDea~~~g~~~~~~~~~~l~----~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~-- 252 (1342)
+++++.+.|++++ +++++|++|++|.. +++ .+|++++|.|||++||.| |+++.+++..+.+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~vDa~qs~g~~-------pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~ 225 (382)
T d2bkwa1 153 DLKAISQAIKQTSPETFFVVDAVCSIGCE-------EFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSK 225 (382)
T ss_dssp CHHHHHHHHHHHCTTSEEEEECTTTTTTS-------CCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHH
T ss_pred cchhhhhhccccccceeeeeecccccccc-------cccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhccc
Confidence 9999999988874 99999999998877 332 379999999999999999 9999998776654321
Q ss_pred -----------------------cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEee
Q psy13354 253 -----------------------VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVS 308 (1342)
Q Consensus 253 -----------------------~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~ 308 (1342)
......++|+.+...++..++..+..++.+...++..+.++++++.+... ++....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 305 (382)
T d2bkwa1 226 NGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVS 305 (382)
T ss_dssp HCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESS
T ss_pred CCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccc
Confidence 11223457778888888888888777788888888888999999998763 444433
Q ss_pred C-CCC---CeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 309 G-GTK---SHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 309 ~-~~~---~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
. +.. ..++.+..++ ...+.++|+++||.+..+.... .....+|+|..
T Consensus 306 ~~~~~~~s~~v~~~~~~~----~~~~~~~L~~~gi~i~~G~~~~-----~~~~~~Ri~~~ 356 (382)
T d2bkwa1 306 RYPSNMSAHGLTAVYVAD----PPDVIAFLKSHGVVIAGGIHKD-----IGPKYIRIGHM 356 (382)
T ss_dssp CSSSTTBCSSCEEEECSC----HHHHHHHHHHTTEECBCCCCTT-----TGGGEEEECCC
T ss_pred cCchhccCCcEEEEcCCC----HHHHHHHHHHCCeEEECCCChh-----hcCCEEEEeCC
Confidence 1 111 1234455543 3445666778899998653221 12356999943
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=99.68 E-value=2.7e-16 Score=172.06 Aligned_cols=200 Identities=22% Similarity=0.292 Sum_probs=147.8
Q ss_pred CCccccccchhhHHHHHHHHH-----------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 388 SNFNTLIGQNHISKSLINALD-----------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 388 ~~f~~lvGq~~~~~~L~~~l~-----------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
.+|+|++|++.+++.|.+.+. ....++++|||||||||||++|+++++++++
T Consensus 6 ~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~----------------- 68 (247)
T d1ixza_ 6 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV----------------- 68 (247)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-----------------
T ss_pred CcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCC-----------------
Confidence 389999999999988876552 1245678999999999999999999999874
Q ss_pred cchhhhccCCCccEEEEccCCC----c--CHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------HHH
Q psy13354 457 SVCVKIDNGCFMDYIEMDAAST----R--GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------------HAF 516 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~----~--~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------------~~~ 516 (1342)
.++.++++.. . ....++++++.+.. ..+-||+|||+|.+.. ...
T Consensus 69 ------------~~~~i~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~ 132 (247)
T d1ixza_ 69 ------------PFITASGSDFVEMFVGVGAARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL 132 (247)
T ss_dssp ------------CEEEEEHHHHHHSCTTHHHHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHHHHHHH
T ss_pred ------------CEEEEEhHHhhhccccHHHHHHHHHHHHHHH----cCCEEEEEEChhhhCccCCCCCCCCcHHHHHHH
Confidence 3666665321 1 12345666665543 2345999999997621 135
Q ss_pred HHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcC
Q psy13354 517 NAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQ 591 (1342)
Q Consensus 517 ~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~ 591 (1342)
+.|+..++. ..+.+++|.+||.++.+++++++ |+ ..++|++|+.++..++++..+++.... ++..+..|++.+.
T Consensus 133 ~~ll~~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~-~~~~~~~la~~t~ 211 (247)
T d1ixza_ 133 NQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTP 211 (247)
T ss_dssp HHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCT
T ss_pred HHHHHHhhCCCCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCc-cccCHHHHHHHCC
Confidence 667777774 34567788899999999999984 77 799999999999999999888776543 4445888999886
Q ss_pred C-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 592 G-SMRDALSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 592 g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
| +.+++.++++.+...+ ...|+.+|+++++
T Consensus 212 g~s~~di~~lv~~A~l~a~~~~~~~i~~~d~~~A~ 246 (247)
T d1ixza_ 212 GFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 246 (247)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHhh
Confidence 6 6666666776654433 3459999998876
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.67 E-value=2.4e-15 Score=173.71 Aligned_cols=304 Identities=15% Similarity=0.112 Sum_probs=203.0
Q ss_pred eeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc
Q psy13354 31 ELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV 109 (1342)
Q Consensus 31 ~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al 109 (1342)
.+.+|+..+++.|++||.....+ . ......++.+.+++.++++++.+ +++++++|||.|+.+++..+
T Consensus 3 L~~PGP~~v~~~V~~am~~~~~~-----h-------r~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl 70 (348)
T d1iuga_ 3 LLTPGPVRLHPKALEALARPQLH-----H-------RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL 70 (348)
T ss_dssp ECSSSSCCCCHHHHHHHHSCCCC-----T-------TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHhcCCCCC-----C-------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhc
Confidence 37889999999999997643321 1 12345567777899999999988 67778889999999999999
Q ss_pred cCCCCEEEEeeccCCccch--hhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeE-EEEcC-CCCCcccCHHH
Q psy13354 110 LNPGDTIMGMSLQEGGHLT--HGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKL-IIAGA-SAYSQYIDFER 185 (1342)
Q Consensus 110 ~~pGD~Vlv~~~~~~~~~s--~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~l-iv~~~-s~~~~~~~l~~ 185 (1342)
+.+||+|++... ++++ ....+...+..+.....+..+ .++++.+ ....++. ++++. +......|+++
T Consensus 71 ~~~g~~vlv~~~---G~f~~~~~~~a~~~~~~~~~~~~~~g~--~~~~~~~----~~~~~~~v~~~h~eTstG~~~~i~~ 141 (348)
T d1iuga_ 71 FAPGERVLVPVY---GKFSERFYEIALEAGLVVERLDYPYGD--TPRPEDV----AKEGYAGLLLVHSETSTGALADLPA 141 (348)
T ss_dssp CCTTCEEEEEEC---SHHHHHHHHHHHHTTCEEEEEECCTTC--CCCTTTS----CCSSCSEEEEESEETTTTEECCHHH
T ss_pred ccccccceeecc---hHHHHHHHHHHHhcCcccccccccCCC--ccccccc----cccCCCeeEEEecchhhhhhccHHH
Confidence 999999997653 3333 234456677766666554432 2233322 1233444 44433 33335569999
Q ss_pred HHHHHHHcC--CEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc--------
Q psy13354 186 FYHIAKNIN--SYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA-------- 252 (1342)
Q Consensus 186 I~~la~~~g--i~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~-------- 252 (1342)
|.++|++++ +++++|.++++|...- .++ .+|++++|.+|+++||+| |+++.+++.++.+++.
T Consensus 142 i~~~~~~~~~~~l~~vDavss~g~~~i-----~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~ 216 (348)
T d1iuga_ 142 LARAFKEKNPEGLVGADMVTSLLVGEV-----ALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLAR 216 (348)
T ss_dssp HHHHHHHHCTTCEEEEECTTTBTTBCC-----CSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHH
T ss_pred HHHHHHhhhccceeechhhhccccccc-----ccccccCCEEEeccccceecCCceeeeeechHHHhhhcccccccchhh
Confidence 999999985 8999999998876611 122 379999999999999999 9999998765544321
Q ss_pred -----cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCH
Q psy13354 253 -----VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 253 -----~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
......+||+.+...++..++..... ...+..++....+..++..+...|++.........++.+.+++.. +.
T Consensus 217 ~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~P~g~-~~ 294 (348)
T d1iuga_ 217 ELKAQKEGESAWTPAINLVLAVAAVLEEVLP-RLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGV-PY 294 (348)
T ss_dssp HHHHHTTTCCSSCCCHHHHHHHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTC-CH
T ss_pred hhhhhccCcccccccchHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEECCCCC-CH
Confidence 12233457778888888888877765 344445544445556666666788887553222235667776544 44
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+...|+++||.+.++..+.. ...+|++.....+
T Consensus 295 ~~~~~~l~~~gi~i~~G~~~l~------~~~~RIg~mG~~~ 329 (348)
T d1iuga_ 295 ARVKEAFAQRGAVIAGGQGPLK------GKVFRLSLMGAYD 329 (348)
T ss_dssp HHHHHHHHTTTEECEECCGGGT------TTEEEECCCSSCC
T ss_pred HHHHHHHHHCCeEEEcCccccC------CCEEEEeCCCCCC
Confidence 4555666778999987633321 2358998765433
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.1e-15 Score=167.65 Aligned_cols=202 Identities=18% Similarity=0.270 Sum_probs=153.2
Q ss_pred CCCccccccchhhHHHHHHHHH-----------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALD-----------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~-----------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
+.+|+|++|.+.+++.|.+.+. ....+.++|||||||||||++|+++|++++.
T Consensus 8 ~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~---------------- 71 (256)
T d1lv7a_ 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV---------------- 71 (256)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC----------------
T ss_pred CCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCC----------------
Confidence 4589999999999988877653 2356778999999999999999999999973
Q ss_pred CcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC--------------HHH
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------------HHA 515 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------------~~~ 515 (1342)
.++.++.+.. .....++++++.+... .+.||+|||+|.+. ...
T Consensus 72 -------------~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~----~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~ 134 (256)
T d1lv7a_ 72 -------------PFFTISGSDFVEMFVGVGASRVRDMFEQAKKA----APCIIFIDEIDAVGRQRGAGLGGGHDEREQT 134 (256)
T ss_dssp -------------CEEEECSCSSTTSCCCCCHHHHHHHHHHHHTT----CSEEEEETTHHHHTCCCSTTSCCTTCHHHHH
T ss_pred -------------CEEEEEhHHhhhcchhHHHHHHHHHHHHHHHc----CCEEEEEEChhhhCccCCCCCCCCcHHHHHH
Confidence 3566655432 2345688888777543 34599999999752 123
Q ss_pred HHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhc
Q psy13354 516 FNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGA 590 (1342)
Q Consensus 516 ~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~ 590 (1342)
.+.|+..++. ..+.+++|.+||.++.+++++++ |+ ..+.|++|+.++..++++.++++.++. ++..+..+++.+
T Consensus 135 ~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t 213 (256)
T d1lv7a_ 135 LNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGT 213 (256)
T ss_dssp HHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTC
T ss_pred HHHHHHHhhCCCCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcC-cccCHHHHHHhC
Confidence 5677888874 34568888899999999999985 77 899999999999999999888776654 455678889988
Q ss_pred CC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 591 QG-SMRDALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 591 ~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
.| +.+++.++++++...+ ...|+.+|+++++.
T Consensus 214 ~G~s~adi~~l~~~A~~~a~~~~~~~i~~~d~~~Al~ 250 (256)
T d1lv7a_ 214 PGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKD 250 (256)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 66 7777777777655443 23488888887764
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.66 E-value=1.2e-15 Score=182.48 Aligned_cols=272 Identities=21% Similarity=0.234 Sum_probs=181.3
Q ss_pred CCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCce
Q psy13354 60 PGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKW 139 (1342)
Q Consensus 60 ~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~ 139 (1342)
.++..|++.+...+||+ .+++++|.++++.++ ||+.|+.++++++++|||+|+..... .+........|..
T Consensus 66 ~GDd~Y~~dpt~~~lE~----~~a~l~G~e~al~~~-SGt~An~~a~~~l~~~Gd~Vi~~~~f----~~~~~~i~~~g~~ 136 (456)
T d1c7ga_ 66 IGDEAYAGSENFYHLEK----TVKELFGFKHIVPTH-QGRGAENLLSQLAIKPGQYVAGNMYF----TTTRFHQEKNGAT 136 (456)
T ss_dssp SCCCCSSSCHHHHHHHH----HHHHHHCCSEEEEES-SHHHHHHHHHHHHCCTTEEEEESSCC----HHHHHHHHHTTEE
T ss_pred ccchhccCCchHHHHHH----HHHHHhCCCeEEECC-CHHHHHHHHHHHhcCCCCeEecCcch----HHHHHHHHHcCce
Confidence 34556888898889988 889999999887777 99999999999999999999843321 1122223344543
Q ss_pred eEEEEec--------CCCCCCCCHHHHHHHHHhcCC---eEEEEcCCCCC------cccCHHHHHHHHHHcCCEEEEEcc
Q psy13354 140 FNSICYG--------LNKKEKIDYKKVEYLAKKNKP---KLIIAGASAYS------QYIDFERFYHIAKNINSYFMVDMA 202 (1342)
Q Consensus 140 ~~~v~~~--------~~~~~~id~e~Le~~i~~~~~---~liv~~~s~~~------~~~~l~~I~~la~~~gi~LIvDea 202 (1342)
...+..+ ....+.+|++.+++.+++.++ .++++..++++ ...++++|.++|++||+.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a 216 (456)
T d1c7ga_ 137 FVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDAT 216 (456)
T ss_dssp EEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred eeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcc
Confidence 2222211 113467899999999987653 45666555554 223688999999999999999999
Q ss_pred cchhhhhc-----CCCCC---------CCCCCcEEEecCCccCCCCCeeEEEEec-hhHHHHhhc----cCCccccCCcH
Q psy13354 203 HYAGLIAA-----GEYPN---------PVPFADFITSTTHKSLRGPRGGFILMKK-KYKKIINSA----VFPGIQGGPLM 263 (1342)
Q Consensus 203 ~~~g~~~~-----~~~~~---------~l~~~Divv~S~sK~l~gp~GG~iv~~~-~l~~~l~~~----~~~~~~~~~~~ 263 (1342)
+..+..+. ..+.+ .+..+|++++|++|.++++.||++++++ ++.+.++.. .....+++...
T Consensus 217 ~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~ 296 (456)
T d1c7ga_ 217 RCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAG 296 (456)
T ss_dssp THHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCH
T ss_pred hhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccceeEEEcCCHHHHHHHHHhccccCCCcccchhhH
Confidence 87654221 01110 1234699999999999888889999886 455544331 12222334434
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC-------C-CCCHHHHHHHHH
Q psy13354 264 HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN-------K-KITGKIAESILE 335 (1342)
Q Consensus 264 ~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~-------~-~~~~~~~~~ll~ 335 (1342)
....+++..+.+... .++.++..+++++|.+.|.+.|+.++. +.+.+.++++... . ......+..++.
T Consensus 297 ~~~~a~a~~l~e~~~---~~~l~~r~~~~~~L~e~L~~~g~~vv~-p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~ 372 (456)
T d1c7ga_ 297 RDMEAMAIGLREAMQ---YEYIEHRVKQVRYLGDKLREAGVPIVE-PTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYM 372 (456)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHTTCCBCS-SCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhccCCccc-CCCCcceeEechhhccCCCcccccHHHHHHHHHH
Confidence 445555555555543 234566678889999999999988765 5567777776421 1 113456777777
Q ss_pred HCCceeeec
Q psy13354 336 SANIICNKN 344 (1342)
Q Consensus 336 ~~GI~v~~~ 344 (1342)
+.||.+.+.
T Consensus 373 ~~GIr~~~~ 381 (456)
T d1c7ga_ 373 ETGVRSMER 381 (456)
T ss_dssp HHSEECEEE
T ss_pred HhCeeeccc
Confidence 779977653
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.65 E-value=5.8e-15 Score=172.56 Aligned_cols=289 Identities=15% Similarity=0.136 Sum_probs=192.9
Q ss_pred cCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCC
Q psy13354 35 SENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPG 113 (1342)
Q Consensus 35 ~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pG 113 (1342)
+.+.++.+-++++.+.+.. ++++.++....+|+ .+++++|.+++++++ |||.|+.+++.++ ..+|
T Consensus 6 ~~p~~~~~~~~~v~~~l~~---------~~~~~G~~v~~fE~----~~~~~~g~k~ai~~~-Sgt~Al~~al~al~~~~~ 71 (371)
T d2fnua1 6 SEPCLDKEDKKAVLEVLNS---------KQLTQGKRSLLFEE----ALCEFLGVKHALVFN-SATSALLTLYRNFSEFSA 71 (371)
T ss_dssp CCCCCCHHHHHHHHHHHTS---------SCCSSSHHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHHHSSCCCT
T ss_pred CCCCCCHHHHHHHHHHHcC---------CCccCCHHHHHHHH----HHHHHHCcCeEEEEe-cHHHHHHHHHHHhcccCC
Confidence 3455666666777776632 23455667777777 899999999988877 9999999999998 4455
Q ss_pred --CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHH
Q psy13354 114 --DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAK 191 (1342)
Q Consensus 114 --D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~ 191 (1342)
|+|++++.+++ +...++...|. .++.++++.++.++.+++++.+++.+..++++ ..++...++++|.++|+
T Consensus 72 ~~~eVi~p~~t~~---a~~~ai~~~G~--~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~v--h~~G~~~~~~~i~~~~~ 144 (371)
T d2fnua1 72 DRNEIITTPISFV---ATANMLLESGY--TPVFAGIKNDGNIDELALEKLINERTKAIVSV--DYAGKSVEVESVQKLCK 144 (371)
T ss_dssp TSCEEEECSSSCT---HHHHHHHHTTC--EEEECCBCTTSSBCGGGSGGGCCTTEEEEEEE--CGGGCCCCHHHHHHHHH
T ss_pred CCCeeeccccccc---ccceeeeccCc--ccccccccccccccchhhhhhccchhhccccc--ccccccccccccccccc
Confidence 48998876554 44455556666 77777888766677788877766544444444 35556779999999999
Q ss_pred HcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEec-hhHHHHhhccCCc--------------
Q psy13354 192 NINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK-KYKKIINSAVFPG-------------- 256 (1342)
Q Consensus 192 ~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~-~l~~~l~~~~~~~-------------- 256 (1342)
++|++||+|+||+.|....+...+....+.++.+...|.+.+..||++++++ ++.+.++.....+
T Consensus 145 ~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 224 (371)
T d2fnua1 145 KHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSI 224 (371)
T ss_dssp HHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSC
T ss_pred ccchhhccchhhccCceeccccCCccccccccccccccccccccceEEEeechhhhhhcccccccccccccccccccccc
Confidence 9999999999999998877666665553334444446999777789999886 5666655422111
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeC----CCCCeEEEEEccCC-CCCHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSG----GTKSHIILVDLRNK-KITGKIA 330 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~----~~~~~~v~i~~~~~-~~~~~~~ 330 (1342)
.++.-++..++|.....++ .++...++.++++.++.+.|.+.. +....+ ....+..++.+... ....+.+
T Consensus 225 G~n~r~sel~Aaigl~qL~----~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~ 300 (371)
T d2fnua1 225 GHNFRLNEIQSALGLSQLK----KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLI 300 (371)
T ss_dssp CCBCCCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHH
T ss_pred cccccccchhhhhhhhhhh----hccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccchhHHHHH
Confidence 1233345556655544443 455667777888889999998753 443321 11123333444332 2234556
Q ss_pred HHHHHHCCceeeeccCCC
Q psy13354 331 ESILESANIICNKNSIPN 348 (1342)
Q Consensus 331 ~~ll~~~GI~v~~~~~p~ 348 (1342)
...|+++||.+.+.+.|.
T Consensus 301 ~~~L~~~gI~~~~~y~pl 318 (371)
T d2fnua1 301 LESLHKRGILAQVHYKPI 318 (371)
T ss_dssp HHHHHHTTEECBCCCCCG
T ss_pred HHHHHHCCCCcceeCccc
Confidence 666667799988765543
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.65 E-value=1.3e-15 Score=180.80 Aligned_cols=314 Identities=13% Similarity=0.074 Sum_probs=195.4
Q ss_pred Cceeeeec----CCC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---Cce-Ee-c
Q psy13354 28 NNIELIAS----ENY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AAN-VQ-P 95 (1342)
Q Consensus 28 ~~i~l~a~----~n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~v-i~-~ 95 (1342)
++|+|..| ++. ..+.|.+|.. .+... ......|....+..+|++++.+++.+..+.. ..+ ++ +
T Consensus 30 ~kInL~iG~~~d~~g~~~~~~~V~~A~~-~l~~~----~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~ 104 (412)
T d1yaaa_ 30 TKVDLGIGAYRDDNGKPWVLPSVKAAEK-LIHND----SSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQS 104 (412)
T ss_dssp SCEECSSCCCBCTTSCBCCCHHHHHHHH-HHHTC----TTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CcEEeecCCCcCCCCCCCCcHHHHHHHH-HHHhC----cccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEec
Confidence 45888766 332 3355777633 33211 1222346677778899998888776655522 222 22 2
Q ss_pred CCHHHHHHHH--HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC--CeEEE
Q psy13354 96 HSGSQANQAV--FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK--PKLII 171 (1342)
Q Consensus 96 ~sGs~A~~~a--l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~--~~liv 171 (1342)
.+|..++..+ +...+.|||+|+++++.++.+ .......|..+..+++..++.+.++.+.+.+.+...+ +.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 181 (412)
T d1yaaa_ 105 LSGTGALHISAKFFSKFFPDKLVYLSKPTWANH---MAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVL 181 (412)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTH---HHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEE
T ss_pred ccchhHHHHHHHHHhccCCCCEEecccccCchh---HHHHHHcCCceecccccccccccccchhhhcccccCCCceEEEE
Confidence 1333333333 344578999999888655544 4555677876666665555677789988888776533 45677
Q ss_pred EcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC----------CCCCCcEEEecCCccCCCCCe
Q psy13354 172 AGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN----------PVPFADFITSTTHKSLRGPRG 236 (1342)
Q Consensus 172 ~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~----------~l~~~Divv~S~sK~l~gp~G 236 (1342)
+++++|| +...+++|+++|+++++++|+|++|....+....... ......+++.|+||.+ +.+|
T Consensus 182 i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G 260 (412)
T d1yaaa_ 182 HSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA-GMYG 260 (412)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS-CCGG
T ss_pred ecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCcc-ccCc
Confidence 7777777 3336999999999999999999999754432110000 0011247889999999 7777
Q ss_pred ---eEEEEechhHHHHhh----------ccCCccccCCcHHHHHHHHHHHHH-----hccchHHHHHHHHHHHHHHHHHH
Q psy13354 237 ---GFILMKKKYKKIINS----------AVFPGIQGGPLMHVIAAKAVAFKE-----VLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 237 ---G~iv~~~~l~~~l~~----------~~~~~~~~~~~~~~~~Aaa~al~~-----~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
||++++++.+..+.. .....++.+++...+.++...+.+ ....+++.+++.+.++++.+.+.
T Consensus 261 ~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 340 (412)
T d1yaaa_ 261 ERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDH 340 (412)
T ss_dssp GCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999754321110 001122334444444444433322 12235677888999999999999
Q ss_pred HHhCCcEEe---eCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 299 LDQRGIRIV---SGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 299 L~~~g~~~~---~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
|++.|.... ..+.++++.|+.+ +.+++.+|++++||++.++ .|++++..++.
T Consensus 341 L~~~g~~~~~~~~~~~gG~F~~~~l-----s~e~~~~L~~e~~V~~~~g--------------~Ris~~g~~~~ 395 (412)
T d1yaaa_ 341 LVKLGTPGNWDHIVNQCGMFSFTGL-----TPQMVKRLEETHAVYLVAS--------------GRASIAGLNQG 395 (412)
T ss_dssp HHHHTCSSCCTHHHHCCSSEEECCC-----CHHHHHHHHHHHCEECCTT--------------SEEEGGGCCTT
T ss_pred HHHhCCCCCCceeCCCceEEEecCc-----CHHHHHHHHHhCCEEECCC--------------CEEEeccCCHH
Confidence 998764311 1245677777543 5688999999999987632 48888765543
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=1.4e-15 Score=174.25 Aligned_cols=299 Identities=20% Similarity=0.197 Sum_probs=185.8
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEE
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMG 118 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv 118 (1342)
.+|.+++||.++. .+...|+..+...+||+ .+++++|.+++++++ |||+|+..++.++..+||.+++
T Consensus 12 p~p~v~~A~~~a~--------~g~~~yg~~p~~~~le~----~lA~~~G~~~~~~~~-sGt~A~~~al~a~~~~g~~~~~ 78 (343)
T d1m6sa_ 12 PTEEMRKAMAQAE--------VGDDVYGEDPTINELER----LAAETFGKEAALFVP-SGTMGNQVSIMAHTQRGDEVIL 78 (343)
T ss_dssp CCHHHHHHHHTCC--------CCCGGGTCCHHHHHHHH----HHHHHTTCSEEEEES-CHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCHHHHHHHHhhh--------cCCcccCCCHHHHHHHH----HHHHHHCCCeEEEeC-CHHHHHHHHHHHHhccCCceec
Confidence 5777999976542 12345666777777777 889999999877777 9999999999999999999997
Q ss_pred eeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCC-----e-EEEEcCCCCC-----cccCHHHHH
Q psy13354 119 MSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKP-----K-LIIAGASAYS-----QYIDFERFY 187 (1342)
Q Consensus 119 ~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~-----~-liv~~~s~~~-----~~~~l~~I~ 187 (1342)
....+..+..........+..+..+ +. ..+..|++.++..+...+. . +++.+..+++ ...++++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 155 (343)
T d1m6sa_ 79 EADSHIFWYEVGAMAVLSGVMPHPV--PG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEIC 155 (343)
T ss_dssp ETTCHHHHSSTTHHHHHTCCEEEEE--CE-ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred cccccceeeecccccccccceeecc--cc-ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHH
Confidence 6655433333333333334433333 32 3455699999988865432 2 2333333333 223678889
Q ss_pred HHHHHcCCEEEEEcccchhhhhcCCCCC--CCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccCCcHHH
Q psy13354 188 HIAKNINSYFMVDMAHYAGLIAAGEYPN--PVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHV 265 (1342)
Q Consensus 188 ~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~ 265 (1342)
++|++||+++++|+++..+......... .....+..+++.+|..++..+|+++...+.+.........+..+.+....
T Consensus 156 ~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T d1m6sa_ 156 TIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGV 235 (343)
T ss_dssp HHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHHTCCCSSTHH
T ss_pred HHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHHHhhhHhhCcccccccchhHH
Confidence 9999999999999998865543322111 01123566677777775777788888887666555433223333332333
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCH-HHHHHHHHHCCceeeec
Q psy13354 266 IAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG-KIAESILESANIICNKN 344 (1342)
Q Consensus 266 ~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~-~~~~~ll~~~GI~v~~~ 344 (1342)
..++........... .....+++.++.+.+.+.+......+..++++++.+++...+. ++...|+ ++||.+.+.
T Consensus 236 ~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~l~~~L~-~~Gi~v~~~ 310 (343)
T d1m6sa_ 236 LAAAGIIALTKMVDR----LKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALR-NSGVLANAV 310 (343)
T ss_dssp HHHHHHHHHHHSSTT----HHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSSCHHHHHHHHH-HHTEECEEE
T ss_pred HHHhhhhhhhhhHHH----HHHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCcccHHHHHHHHH-HCCCEEecC
Confidence 333333333332222 3345566666777776655444344566789999988766554 4555555 459999864
Q ss_pred cCCCCCCCcccccccccccccccc
Q psy13354 345 SIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 345 ~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
. ..++|++++..+|
T Consensus 311 ~----------~~~iRi~~~~~~t 324 (343)
T d1m6sa_ 311 S----------DTEIRLVTHKDVS 324 (343)
T ss_dssp E----------TTEEEEECCTTSC
T ss_pred C----------CCEEEEECCCCCC
Confidence 1 3468998876544
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.63 E-value=4.7e-15 Score=175.91 Aligned_cols=313 Identities=12% Similarity=0.019 Sum_probs=191.6
Q ss_pred Cceeeeec----C---CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----C-ceEec
Q psy13354 28 NNIELIAS----E---NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----A-ANVQP 95 (1342)
Q Consensus 28 ~~i~l~a~----~---n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~-~vi~~ 95 (1342)
+.|++..| + .++.|.|.+|......+ ......|+...+..+|++++++++.+..+.+ . +++.+
T Consensus 31 ~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~-----~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~ 105 (412)
T d1ajsa_ 31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN-----SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQS 105 (412)
T ss_dssp TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC-----TTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhC-----CCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecc
Confidence 55888877 1 23445677774433321 1222447777888899998888877655432 2 23333
Q ss_pred CCHHHHHHHHHH-------HccCCCCEEEEeeccCCccchhhHHhhhCCceeE-EEEecCCCCCCCCHHHHHHHHHh--c
Q psy13354 96 HSGSQANQAVFF-------SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFN-SICYGLNKKEKIDYKKVEYLAKK--N 165 (1342)
Q Consensus 96 ~sGs~A~~~al~-------al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~-~v~~~~~~~~~id~e~Le~~i~~--~ 165 (1342)
.+++.++..+.. ++++|||+|+++++.++. +...+...|.... +.+..-++.+.+|.+.+++.+.. .
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~---y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~ 182 (412)
T d1ajsa_ 106 LGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWEN---HNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPE 182 (412)
T ss_dssp EHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTH---HHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCT
T ss_pred cchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchh---hHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhccC
Confidence 355555544433 337899999988865554 4455566675432 33333334556788888777654 3
Q ss_pred CCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--C-----CCCCcEEEecCCccCCC
Q psy13354 166 KPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--P-----VPFADFITSTTHKSLRG 233 (1342)
Q Consensus 166 ~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~-----l~~~Divv~S~sK~l~g 233 (1342)
+.+++++++++|| +...+++|+++|++||++||+||+|....+....... . .....+++.|+||.+ +
T Consensus 183 ~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~ 261 (412)
T d1ajsa_ 183 FSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNF-G 261 (412)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-C
T ss_pred CcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccc-c
Confidence 4567777777777 3336999999999999999999999764432211000 0 011357788999999 6
Q ss_pred CCe---eEEEEechhHHHHhhcc------CCccccCCcHHHHHHHHHHHH-----HhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 234 PRG---GFILMKKKYKKIINSAV------FPGIQGGPLMHVIAAKAVAFK-----EVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 234 p~G---G~iv~~~~l~~~l~~~~------~~~~~~~~~~~~~~Aaa~al~-----~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
..| ||++++....+.+.... ....+.++....+.++...+. .....+++.+++++.++++.+.+.|
T Consensus 262 ~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L 341 (412)
T d1ajsa_ 262 LYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARL 341 (412)
T ss_dssp CGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 99999876554432210 111222232333333322221 1223356677888999999999999
Q ss_pred HhCCcEEe---eCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 300 DQRGIRIV---SGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 300 ~~~g~~~~---~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++.+.... ..+.+++|.|+. .+.+++.++++++||++.|+ .|++++..++
T Consensus 342 ~~~~~~~~~~~i~~~~G~F~~~~-----ls~~~v~~L~~e~gV~~vpg--------------~Ri~~ag~~~ 394 (412)
T d1ajsa_ 342 EALKTPGTWNHITDQIGMFSFTG-----LNPKQVEYLINQKHIYLLPS--------------GRINMCGLTT 394 (412)
T ss_dssp HHTTCSSCCHHHHHCCSSEEECC-----CCHHHHHHHHHTTCEECCTT--------------SEEEGGGCCT
T ss_pred HHhCCCCCeeeecCCCeEEEecC-----CCHHHHHHHHHhCCEEEeCC--------------CeEEeccCCH
Confidence 98764311 123456777743 35678889999999987642 3888776544
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.62 E-value=2.3e-15 Score=177.61 Aligned_cols=324 Identities=12% Similarity=0.067 Sum_probs=200.6
Q ss_pred HHHHHHHHHHhc-cCceeeeecC-------CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh
Q psy13354 15 IWEIILKEKQRQ-NNNIELIASE-------NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF 86 (1342)
Q Consensus 15 ~~~~~~~~~~~~-~~~i~l~a~~-------n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~ 86 (1342)
+.+.+....+.. .+.|++..|. .+..|.|.+|+...+.+.. ...|+...+..+|++++++++.+..
T Consensus 13 i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~------~~~Y~p~~G~~~lr~aia~~~~~~~ 86 (394)
T d2ay1a_ 13 ILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET------TKTYAGLSGEPEFQKAMGELILGDG 86 (394)
T ss_dssp HHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCC------CCCCCCSSCCHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCC------CCCCCCCCCCHHHHHHHHHHHhccc
Confidence 445544433322 2568887762 2445679999777664322 1236667778899998888887766
Q ss_pred CCC---CceEecCCHHH--HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHH
Q psy13354 87 NAE---AANVQPHSGSQ--ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYL 161 (1342)
Q Consensus 87 g~~---~~vi~~~sGs~--A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~ 161 (1342)
+.. ..++++ +|+. ++...+..+.++||+|+++++.++. +.......|..+..+++..+..+..+.+.+++.
T Consensus 87 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~---y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (394)
T d2ay1a_ 87 LKSETTATLATV-GGTGALRQALELARMANPDLRVFVSDPTWPN---HVSIMNFMGLPVQTYRYFDAETRGVDFEGMKAD 162 (394)
T ss_dssp CCGGGEEEEEEE-HHHHHHHHHHHHHHHHCTTCCEEEEESCCHH---HHHHHHHHTCCEEEEECEETTTTEECHHHHHHH
T ss_pred cccccccceecc-CchHHHHHHHHHhhhcCCceEEEEecccccc---hHHHHHHcCCEEEEecccchhcccccchhHHHH
Confidence 544 334444 4444 4556666778999999988755544 445556667655555444345566677777776
Q ss_pred HHhc--CCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC------CCCcEEEecCC
Q psy13354 162 AKKN--KPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV------PFADFITSTTH 228 (1342)
Q Consensus 162 i~~~--~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l------~~~Divv~S~s 228 (1342)
.... ++.++++++++|| +...+++|+++|++|+++||+|++|....+......... ....+++.|+|
T Consensus 163 ~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~s 242 (394)
T d2ay1a_ 163 LAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCS 242 (394)
T ss_dssp HHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECT
T ss_pred HhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhccccccccccc
Confidence 6543 3456666667777 333799999999999999999999975544221111000 01246677999
Q ss_pred ccCCCCCe---eEEEEechhHHHHhhcc------CCccccCCcHHHHHHHHHHH-----HHhccchHHHHHHHHHHHHHH
Q psy13354 229 KSLRGPRG---GFILMKKKYKKIINSAV------FPGIQGGPLMHVIAAKAVAF-----KEVLKPDFKIYQKQVVKNAKI 294 (1342)
Q Consensus 229 K~l~gp~G---G~iv~~~~l~~~l~~~~------~~~~~~~~~~~~~~Aaa~al-----~~~l~~~~~~~~~~l~~~a~~ 294 (1342)
|.+ +..| |+++++....+...... ......++....+..+...+ .....+.++.+++++.++++.
T Consensus 243 k~~-~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~ 321 (394)
T d2ay1a_ 243 KNF-GIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQ 321 (394)
T ss_dssp TTT-TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-cCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 5566 99999886554432210 01111222222222222111 112234566778888999999
Q ss_pred HHHHHHhCC----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 295 LSKILDQRG----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 295 l~~~L~~~g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+.+.|++.+ +... .+.+++|+|+.+ +.+++.+|++++||++.++ .|++++..++.
T Consensus 322 l~~~L~~~~~~~~~~~~-~~~~G~F~~~~l-----s~~~~~~L~~~~~V~~~~g--------------~Ri~~a~l~~~ 380 (394)
T d2ay1a_ 322 LAGELRDLSGSDRFGFV-AEHRGMFSRLGA-----TPEQVKRIKEEFGIYMVGD--------------SRINIAGLNDN 380 (394)
T ss_dssp HHHHHHHHHTSSTTTHH-HHCCSSEEECCC-----CHHHHHHHHHHHCEECCTT--------------CEEEGGGCCTT
T ss_pred HHHHHHHhCCCCceeeE-CCCceeEEecCc-----CHHHHHHHHHhCCEEecCC--------------CEEEecCCCHH
Confidence 999998854 2222 245677888754 4678899999999988742 48888765553
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.62 E-value=1.9e-14 Score=164.46 Aligned_cols=308 Identities=13% Similarity=0.092 Sum_probs=185.2
Q ss_pred eeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc
Q psy13354 32 LIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV 109 (1342)
Q Consensus 32 l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al 109 (1342)
.|+|+|+. +|.|++|+.++..+ +. ..|+.. +..+++++++++++|.+..+++++|||+|+..++..+
T Consensus 6 ~f~s~n~~g~~P~v~~A~~~a~~~-~~------~~~~~~----~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~ 74 (345)
T d1v72a1 6 GFSSDNIAGASPEVAQALVKHSSG-QA------GPYGTD----ELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAM 74 (345)
T ss_dssp BCSCGGGCCCCHHHHHHHHHTTSS-CC------CSTTCS----HHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTS
T ss_pred CcCCCCCCCCCHHHHHHHHHHhcc-Cc------cccCCC----HHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHH
Confidence 45677774 77799998765421 11 112333 3445566699999999988888779999999999999
Q ss_pred cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-----CeE--EEEcCCCCC----
Q psy13354 110 LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-----PKL--IIAGASAYS---- 178 (1342)
Q Consensus 110 ~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-----~~l--iv~~~s~~~---- 178 (1342)
+.+++.+++....+..+...+......+. ....+....++.++++.++..+.+.. +.. +..+..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (345)
T d1v72a1 75 TPPWGNIYCHPASHINNDECGAPEFFSNG--AKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIY 152 (345)
T ss_dssp CCTTEEEEECTTSHHHHSSTTHHHHHTTS--CEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCC
T ss_pred HhcCCccccccccceeeechhhHHHhcCc--ccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccc
Confidence 99999988765554444333333344444 33444555677889999999887542 222 222222222
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-C---CCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC
Q psy13354 179 QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-P---FADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~---~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~ 254 (1342)
...+++++.++|++||+++++|++|..+........... . ..+.++.+.+|...+..++.+...............
T Consensus 153 ~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (345)
T d1v72a1 153 TLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRK 232 (345)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGGHHHHHHHHH
T ss_pred cchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccccccccchhhhhhhcccccc
Confidence 233688899999999999999999976554332211111 1 134566666666523333433333333332222111
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
....+.+ ....+++.+..............+...+..++.+.+.+. |+.+. .+..+++++++++ .+.+..+
T Consensus 233 ~~~~~~~--~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~-~p~~~niv~~~~~-----~~~~~~L 304 (345)
T d1v72a1 233 RAGHLSS--KMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVL-GGTEANILFCRLD-----SAMIDAL 304 (345)
T ss_dssp HTTCCCS--STHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE-SCCCSSEEEEEEC-----HHHHHHH
T ss_pred ccccccc--hhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEec-cCCCccEEEEEcC-----HHHHHHH
Confidence 1111111 122222333333333345556667777788888888886 56553 4567889998875 3566666
Q ss_pred HHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+++ ||.+.+. +...+.+|++++..+|.
T Consensus 305 ~~~-gi~v~~~--------~~~~~~lR~~~~~~~T~ 331 (345)
T d1v72a1 305 LKA-GFGFYHD--------RWGPNVVRFVTSFATTA 331 (345)
T ss_dssp HHT-TCBCBCS--------SSSTTEEEEECCTTCCH
T ss_pred HHc-CCCcccc--------CCCCCEEEEECCCCCCH
Confidence 665 9887532 11246799999887774
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=1.9e-15 Score=178.43 Aligned_cols=313 Identities=14% Similarity=0.113 Sum_probs=196.5
Q ss_pred Cceeeeec----C---CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----Cc-eEec
Q psy13354 28 NNIELIAS----E---NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AA-NVQP 95 (1342)
Q Consensus 28 ~~i~l~a~----~---n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~-vi~~ 95 (1342)
++|+|..| + .+..+.|++|+.....+.. ...|+...+..+|++++++++.+..+.. .. .+.+
T Consensus 27 ~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~------~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~ 100 (396)
T d2q7wa1 27 GKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET------TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQT 100 (396)
T ss_dssp -CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCC------CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCC------CCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeecc
Confidence 45888776 2 2344678888777664322 1236667777899998888877655532 22 2233
Q ss_pred CCHHHHHH--HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEE
Q psy13354 96 HSGSQANQ--AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLII 171 (1342)
Q Consensus 96 ~sGs~A~~--~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv 171 (1342)
.+|+.+.. ..+...+.+||.|+++++.++.+ .......|..+..++...++++..+...+.+..... ++.+++
T Consensus 101 ~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 177 (396)
T d2q7wa1 101 PGGTGALRVAADFLAKNTSVKRVWVSNPSWPNH---KSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLF 177 (396)
T ss_dssp SHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHH---HHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEE
T ss_pred chHHHHHHHHHHHHhhcccceEEEEecCCCccc---hHHHHHcCCeeEecccccccccccccchHHHHHHHhccCcEEEE
Confidence 24444443 44445578999999887655544 455567777555555554556666777777665442 346677
Q ss_pred EcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC------CCCcEEEecCCccCCCCCe---e
Q psy13354 172 AGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV------PFADFITSTTHKSLRGPRG---G 237 (1342)
Q Consensus 172 ~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l------~~~Divv~S~sK~l~gp~G---G 237 (1342)
+++++|| +...+++|+++|++|+++||+||+|....++........ ....+++.|++|.+ +..| |
T Consensus 178 ~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~-~~~G~R~G 256 (396)
T d2q7wa1 178 HGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNF-GLYNERVG 256 (396)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT-TCGGGCCE
T ss_pred ecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccc-cccCCCcc
Confidence 7777777 333689999999999999999999975544321111111 11247788999999 6677 9
Q ss_pred EEEEechhHHHHhhcc------CCccccCCcHHHHHHHHHHHH-----HhccchHHHHHHHHHHHHHHHHHHHHhCCcEE
Q psy13354 238 FILMKKKYKKIINSAV------FPGIQGGPLMHVIAAKAVAFK-----EVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306 (1342)
Q Consensus 238 ~iv~~~~l~~~l~~~~------~~~~~~~~~~~~~~Aaa~al~-----~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~ 306 (1342)
|++++...++.+.... ....+.++....+.++...+. ....++++.+++++.++++.+.+.|++.|...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~ 336 (396)
T d2q7wa1 257 ACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANR 336 (396)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCS
T ss_pred ccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999986655443211 112233343444444433321 11233567778889999999999999987432
Q ss_pred e---eCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 307 V---SGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 307 ~---~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
. ..+++++|.|+.+ +.+++.+|++++||++.++ -|++++..++.
T Consensus 337 ~~~~~~~~~G~F~~~~l-----~~e~~~~L~~e~gV~~~~g--------------~Ri~~a~l~~~ 383 (396)
T d2q7wa1 337 DFSFIIKQNGMFSFSGL-----TKEQVLRLREEFGVYAVAS--------------GRVNVAGMTPD 383 (396)
T ss_dssp CCTHHHHCCSSEEECCC-----CHHHHHHHHHHHCEECCTT--------------CEEEGGGCCTT
T ss_pred CcceecCCCeEEEeeCC-----CHHHHHHHHHhCCEEECCC--------------CEEEecCCCHH
Confidence 1 1234567888644 4578999999999987632 28887765443
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.61 E-value=1.7e-14 Score=172.75 Aligned_cols=292 Identities=13% Similarity=0.119 Sum_probs=197.4
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCCCc----------eEecCCHHHHHHHHHHHccC----------CC--------C-E
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAEAA----------NVQPHSGSQANQAVFFSVLN----------PG--------D-T 115 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~~~----------vi~~~sGs~A~~~al~al~~----------pG--------D-~ 115 (1342)
+..++...++|..+.+|+++++|.+.. -+++++||.|+..++.+.-. +| . .
T Consensus 105 ~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~v 184 (476)
T d1js3a_ 105 WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLV 184 (476)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEE
T ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceE
Confidence 445677789999999999999998632 24555999999988865421 11 1 2
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-----CeEEEEcCCCCC--cccCHHHHHH
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-----PKLIIAGASAYS--QYIDFERFYH 188 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-----~~liv~~~s~~~--~~~~l~~I~~ 188 (1342)
|+++ ..+|++..+++...|.++.. ++.++++++|+++|++.+.+.+ |.+|+.+.+++. ...|+++|++
T Consensus 185 v~~s---~~~H~Si~ka~~~lGl~~~~--v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~ 259 (476)
T d1js3a_ 185 AYAS---DQAHSSVERAGLIGGVKLKA--IPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGP 259 (476)
T ss_dssp EEEE---TTCCHHHHHHHHHHTCEEEE--ECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred EEec---ccccHHHHHHHHhcCceEEE--eccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHH
Confidence 3323 35678888888888986544 5778899999999999987532 445555443333 6669999999
Q ss_pred HHHHcCCEEEEEcccchhhhhcCCCCCC---CCCCcEEEecCCccCCCCCe-eEEEEechh-HHH--------Hh---hc
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAAGEYPNP---VPFADFITSTTHKSLRGPRG-GFILMKKKY-KKI--------IN---SA 252 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~~~~~~~---l~~~Divv~S~sK~l~gp~G-G~iv~~~~l-~~~--------l~---~~ 252 (1342)
+|++||+|+++|+||+........+... ++.+|.++.++|||+..|.+ |+++.++.- ... +. ..
T Consensus 260 i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~ 339 (476)
T d1js3a_ 260 ICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQG 339 (476)
T ss_dssp HHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------
T ss_pred HHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhcccccc
Confidence 9999999999999987655433332222 23479999999999988887 877777521 111 10 00
Q ss_pred cC------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC-C
Q psy13354 253 VF------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK-K 324 (1342)
Q Consensus 253 ~~------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~-~ 324 (1342)
.. .+...++.......++.++..+..+++.+..++..++++++.+.+++. +|++.. ++..+++.+++.+. .
T Consensus 340 ~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~-~p~l~iV~Fr~~~~d~ 418 (476)
T d1js3a_ 340 SGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCA-EVTLGLVCFRLKGSDG 418 (476)
T ss_dssp CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECS-CCCSSEEEEEESSCHH
T ss_pred ccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEC-CCceEEEEEEccCChH
Confidence 00 011111111223445666777777789999999999999999999986 788865 45566777777543 2
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+..+.+++.++..+++.+..+.+ ...+|+++....|.
T Consensus 419 ~n~~l~~~l~~~G~~~~s~t~~~g-------~~~lR~~i~n~~Tt 456 (476)
T d1js3a_ 419 LNEALLERINSARKIHLVPCRLRG-------QFVLRFAICSRKVE 456 (476)
T ss_dssp HHHHHHHHHHHHTSCBCEEEEETT-------EEEEEEECCCTTCC
T ss_pred HHHHHHHHHHhcCCEEEeeeeECC-------EEEEEEEeCCCCCC
Confidence 234667777777557676543322 23589998876553
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=5.5e-14 Score=167.43 Aligned_cols=342 Identities=13% Similarity=0.063 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHhc-cCceeeeec-CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC-
Q psy13354 14 KIWEIILKEKQRQ-NNNIELIAS-ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA- 90 (1342)
Q Consensus 14 ~~~~~~~~~~~~~-~~~i~l~a~-~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~- 90 (1342)
..++.+.++.... +..+++... ..+++|.+.+.+.+.+...+ . .+...+...++|..+.+++++++|.+.
T Consensus 39 ~~~~~i~d~l~~dg~~~~n~asf~~t~~~~~~~~l~~~~~~~N~----~---~~~~~P~~~~lE~~~v~~la~L~~~p~~ 111 (450)
T d1pmma_ 39 VAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNW----I---DKEEYPQSAAIDLRCVNMVADLWHAPAP 111 (450)
T ss_dssp HHHHHHHHHGGGSCCGGGBCSCCSCCCCCHHHHHHHHHTTTCBT----T---CTTTSHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHhcCC----C---CcccCccHHHHHHHHHHHHHHHhCCCcc
Confidence 4566665543221 122333222 45677777777776653222 1 123345677999999999999999752
Q ss_pred -----ceEecCCHHHHHHHHHHHcc-----------CCCC-EEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCC
Q psy13354 91 -----ANVQPHSGSQANQAVFFSVL-----------NPGD-TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEK 152 (1342)
Q Consensus 91 -----~vi~~~sGs~A~~~al~al~-----------~pGD-~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~ 152 (1342)
.-+++.|||+|++.++.+.- .+++ .++++. ..|.+..++++..|++++.+ +.+ .++.
T Consensus 112 ~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~---~~H~s~~Kaa~~~gi~~~~v--~~~~~~~~ 186 (450)
T d1pmma_ 112 KNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCG---PVQICWHKFARYWDVELREI--PMRPGQLF 186 (450)
T ss_dssp TTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEES---SCCHHHHHHHHHTTCEEEEC--CCBTTBCS
T ss_pred ccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEec---ccHHHHHHHHHHcCCCceEe--eecCCCCc
Confidence 22455599999999887652 1233 344333 46888888889999966655 444 4699
Q ss_pred CCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHH------HHcCCEEEEEcccchhhhh--cCCCC--CCCCCCc
Q psy13354 153 IDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIA------KNINSYFMVDMAHYAGLIA--AGEYP--NPVPFAD 221 (1342)
Q Consensus 153 id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la------~~~gi~LIvDea~~~g~~~--~~~~~--~~l~~~D 221 (1342)
+|++++++++.+.+..++....++.. ...|+++|.++| +++|+|++||+|++.+... ..... .-+..+|
T Consensus 187 ~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aD 266 (450)
T d1pmma_ 187 MDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVK 266 (450)
T ss_dssp CCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEE
T ss_pred CcHHHHHHHhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhccccee
Confidence 99999999988654333333333333 555888887775 5579999999998755432 11111 1233589
Q ss_pred EEEecCCccCCCCCe-eEEEEechh-HHHHhhc---------cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGPRG-GFILMKKKY-KKIINSA---------VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVK 290 (1342)
Q Consensus 222 ivv~S~sK~l~gp~G-G~iv~~~~l-~~~l~~~---------~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~ 290 (1342)
.++.|+|||+.+|.| |+++.++.- ....... ......++-......++.+.+.....++++++.++..+
T Consensus 267 Si~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~ 346 (450)
T d1pmma_ 267 SISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQ 346 (450)
T ss_dssp EEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999988989 999987632 1111000 00111111222344455666677777789999999999
Q ss_pred HHHHHHHHHHhCC-cEEeeCC---CCCeEEEEEccCC---CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccc
Q psy13354 291 NAKILSKILDQRG-IRIVSGG---TKSHIILVDLRNK---KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGS 363 (1342)
Q Consensus 291 ~a~~l~~~L~~~g-~~~~~~~---~~~~~v~i~~~~~---~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~ 363 (1342)
+++++.+.|.+.+ ++++.++ ...+.+.+.+.+. ..+...+...|+++|..+.....|..... ...+|+++
T Consensus 347 la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~---~~~lRvvv 423 (450)
T d1pmma_ 347 VAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATD---IVVMRIMC 423 (450)
T ss_dssp HHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTCTT---CEEEEEEC
T ss_pred HHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCcCC---cEEEEEEc
Confidence 9999999999864 7776522 2345677777543 23444556666677988876554443322 24589988
Q ss_pred ccccccc
Q psy13354 364 SAITTRG 370 (1342)
Q Consensus 364 ~~~~t~~ 370 (1342)
...+|.+
T Consensus 424 ~~~~t~e 430 (450)
T d1pmma_ 424 RRGFEMD 430 (450)
T ss_dssp CTTCCHH
T ss_pred cCCCCHH
Confidence 8776653
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.59 E-value=6.4e-14 Score=163.74 Aligned_cols=217 Identities=14% Similarity=0.089 Sum_probs=150.2
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~ 146 (1342)
++....+|+ .+++++|.++++.++ |||.|+++++.++ +.+||+|++++..+++. ..++...|. .++.++
T Consensus 20 G~~~~~fE~----~~~~~~~~~~~~~~~-SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~---~~~~~~~g~--~pv~~D 89 (374)
T d1o69a_ 20 GEFVNRFEQ----SVKDYSKSENALALN-SATAALHLALRVAGVKQDDIVLASSFTFIAS---VAPICYLKA--KPVFID 89 (374)
T ss_dssp THHHHHHHH----HHHHHHCCSEEEEES-CHHHHHHHHHHHTTCCTTCEEEEESSSCGGG---THHHHHTTC--EEEEEC
T ss_pred CHHHHHHHH----HHHHHHCcCeEEEeC-CHHHHHHHHHHHcCCCCcCEEEeCCcchHhh---HHHHhhccc--eeEecc
Confidence 566667777 899999999888887 9999999999999 88999999988776554 344455566 677777
Q ss_pred CCCCCCC-CHHHHHH--HHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEE
Q psy13354 147 LNKKEKI-DYKKVEY--LAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFI 223 (1342)
Q Consensus 147 ~~~~~~i-d~e~Le~--~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Div 223 (1342)
++++... +.+..+. ...+.+..++++ ..++.+.++++|.++|+++|++||+|+||++|....+...+.+. |+.
T Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~~aii~~--~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~g--d~~ 165 (374)
T d1o69a_ 90 CDETYNIDVDLLKLAIKECEKKPKALILT--HLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFG--EFG 165 (374)
T ss_dssp BCTTSSBCHHHHHHHHHHCSSCCCEEEEE--CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSS--SEE
T ss_pred cccccccccccccccchhccccccccccc--ccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCC--ceE
Confidence 7754333 3333332 222223334444 34556679999999999999999999999999887776555544 777
Q ss_pred EecCC--ccCCCCCeeEEEEec-hhHHHHhhccCCc------------cccCCcHHHHHHHHHHHHHhccchHHHHHHHH
Q psy13354 224 TSTTH--KSLRGPRGGFILMKK-KYKKIINSAVFPG------------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288 (1342)
Q Consensus 224 v~S~s--K~l~gp~GG~iv~~~-~l~~~l~~~~~~~------------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l 288 (1342)
++||+ |.+++..||++++++ ++.+.++...... .++.-++..++|...+.+. .+....++.
T Consensus 166 ~fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~----~l~~~i~~r 241 (374)
T d1o69a_ 166 VYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQME----VLEQRVLKK 241 (374)
T ss_dssp EEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHT----THHHHHHHH
T ss_pred EEeccCccccccccceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHh----hhhhhcchh
Confidence 77776 999777778888875 5665554322111 1223345566666555443 444566777
Q ss_pred HHHHHHHHHHHHhC
Q psy13354 289 VKNAKILSKILDQR 302 (1342)
Q Consensus 289 ~~~a~~l~~~L~~~ 302 (1342)
+++++++.+.|.+.
T Consensus 242 ~~i~~~y~~~L~~~ 255 (374)
T d1o69a_ 242 REIYEWYKEFLGEY 255 (374)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcccc
Confidence 78888888888764
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.59 E-value=8.7e-15 Score=176.32 Aligned_cols=221 Identities=16% Similarity=0.071 Sum_probs=142.5
Q ss_pred HHHHHHHHhCCCCceEecCCH-HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhh-hCCceeEEEEecCCCCC----
Q psy13354 78 AINRLKKIFNAEAANVQPHSG-SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLN-MSGKWFNSICYGLNKKE---- 151 (1342)
Q Consensus 78 ~~~~la~~~g~~~~vi~~~sG-s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~-~~g~~~~~v~~~~~~~~---- 151 (1342)
+++.+++++|++++++++ || |.++.+++.++++|||+|++....| .+...... ..+....+...+.++.+
T Consensus 71 ae~~~A~~~ga~~a~f~~-~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H---~Sv~~~~~~l~~~~~~~~~~~~~~~g~~~~ 146 (462)
T d1c4ka2 71 AEKHAARVYNADKTYFVL-GGSSNANNTVTSALVSNGDLVLFDRNNH---KSVYNSALAMAGGRPVYLQTNRNPYGFIGG 146 (462)
T ss_dssp HHHHHHHHTTCSEEEEES-SHHHHHHHHHHHHHCCTTCEEEEETTCC---HHHHHHHTTTTCCEEEEECEEECTTCCEEE
T ss_pred HHHHHHHHhCCCeEEEEC-CchHHHHHHHHHHhcCCCCeEEecccch---HHHHHHHHHHhcCCceeeecccccccccCC
Confidence 445999999999888888 66 4577788999999999999777544 44443222 23344444444444332
Q ss_pred ----CCCHHHHHHH---------HHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC---
Q psy13354 152 ----KIDYKKVEYL---------AKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--- 214 (1342)
Q Consensus 152 ----~id~e~Le~~---------i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--- 214 (1342)
.++.+.++.. ...+++.+++++.+++. ...|+++|+++|++||++|++|+||+.+....+...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~ 226 (462)
T d1c4ka2 147 IYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSS 226 (462)
T ss_dssp ECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGC
T ss_pred CChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcch
Confidence 2344444332 22334456666555555 566999999999999999999999987765432211
Q ss_pred -------CCCCCCcEEEecCCccCCCCCeeEEEE-echhH---------HHHhhccCCccccCCcHHHHHHHHHHHHHhc
Q psy13354 215 -------NPVPFADFITSTTHKSLRGPRGGFILM-KKKYK---------KIINSAVFPGIQGGPLMHVIAAKAVAFKEVL 277 (1342)
Q Consensus 215 -------~~l~~~Divv~S~sK~l~gp~GG~iv~-~~~l~---------~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l 277 (1342)
.....+|++++|+||+++++.||.++. ++..+ ..++.....+..+++..+..+++.++.....
T Consensus 227 ~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~ 306 (462)
T d1c4ka2 227 PLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQE 306 (462)
T ss_dssp TTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHS
T ss_pred hhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHHH
Confidence 111235999999999997766765654 43322 1222222223345566666666666655554
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 278 KPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 278 ~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
....+++.++..+++.++++.+.+.
T Consensus 307 ~~~g~~l~~~~~~~a~~~r~~l~~~ 331 (462)
T d1c4ka2 307 GEAGRKLWHDLLITTIEARKKLIKA 331 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677888899999999998875
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=1e-15 Score=180.81 Aligned_cols=314 Identities=11% Similarity=0.047 Sum_probs=190.6
Q ss_pred cCceeeeec----CC---CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecC
Q psy13354 27 NNNIELIAS----EN---YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPH 96 (1342)
Q Consensus 27 ~~~i~l~a~----~n---~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~ 96 (1342)
.++|+|..| ++ +..+.|.+|...... .......|+...+..+|++++++++.+..+.. +.++++.
T Consensus 26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~-----~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~ 100 (397)
T d3tata_ 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNA-----QPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQ 100 (397)
T ss_dssp SSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTT-----SCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECC
T ss_pred CCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHh-----CcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEec
Confidence 345888776 22 234557777443221 12223457778888899997777766554432 2233221
Q ss_pred CHHH----HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEE
Q psy13354 97 SGSQ----ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLI 170 (1342)
Q Consensus 97 sGs~----A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~li 170 (1342)
+++. ++..++.+++.|||+|+++++.+ ..+.......|..+..+++..+..+..|.+.+.+.+... +++++
T Consensus 101 ~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y---~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (397)
T d3tata_ 101 TLGGSGALKVGADFLKRYFPESGVWVSDPTW---ENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVL 177 (397)
T ss_dssp BSHHHHHHHHHHHHHHHHCSSCCCEECSSCC---TTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCE
T ss_pred CchhHHHHHHHHHHhhhcCCCCcceecccCc---cccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEE
Confidence 2222 45566667789999999766444 455556677777555555444566778888888776543 34566
Q ss_pred EEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC------CCCCcEEEecCCccCCCCCe---
Q psy13354 171 IAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP------VPFADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 171 v~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~------l~~~Divv~S~sK~l~gp~G--- 236 (1342)
++++++|| +...+++|+++|++|+++||+|++|....++....... ....-+++.|+||.+ +++|
T Consensus 178 ~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~Ri 256 (397)
T d3tata_ 178 LHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF-SLYGERV 256 (397)
T ss_dssp ECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHH-TBTTTCC
T ss_pred EecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccc-cccCccc
Confidence 66666666 33378999999999999999999997644421110000 111247889999998 7777
Q ss_pred eEEEEechhHHHHhh------ccCCccccCCcHHHHHHHHHHHHH-----hccchHHHHHHHHHHHHHHHHHHHHhCC--
Q psy13354 237 GFILMKKKYKKIINS------AVFPGIQGGPLMHVIAAKAVAFKE-----VLKPDFKIYQKQVVKNAKILSKILDQRG-- 303 (1342)
Q Consensus 237 G~iv~~~~l~~~l~~------~~~~~~~~~~~~~~~~Aaa~al~~-----~l~~~~~~~~~~l~~~a~~l~~~L~~~g-- 303 (1342)
||++++...++.... ......+.++....+.++...+.. ...++.+.+++++.++++.+.+.|...+
T Consensus 257 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 336 (397)
T d3tata_ 257 GGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPE 336 (397)
T ss_dssp BCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTT
T ss_pred cccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999988754433221 012223333333344433333221 1122455566777777777888777653
Q ss_pred --cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 304 --IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 304 --~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+.+. .+.+++|+|+.+ +.+++.+|++++||++.++ .|++++..++.
T Consensus 337 ~~~~~~-~~~~G~F~~~~l-----s~e~~~~L~~e~~V~l~~g--------------~Ri~~a~~~~~ 384 (397)
T d3tata_ 337 RNFDYL-LNQRGMFSYTGL-----SAAQVDRLREEFGVYLIAS--------------GRMCVAGLNTA 384 (397)
T ss_dssp SCTTHH-HHCCSSBCCCCC-----CHHHHHHHTTTTCEECCSS--------------SCCBTTSCCTT
T ss_pred CceEEE-cCCCceEEecCc-----CHHHHHHHHHhCCEEeCCC--------------CEEEeccCCHH
Confidence 3322 245667777654 4578999999999988642 48888775543
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=6.1e-14 Score=154.67 Aligned_cols=183 Identities=15% Similarity=0.212 Sum_probs=134.8
Q ss_pred CccccccchhhHHHHHHHHHc-----------C-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 389 NFNTLIGQNHISKSLINALDK-----------K-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~-----------~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
+|+|++|++++++.|.+.+.. | ..+.++|||||||||||++++++++++..
T Consensus 2 ~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~----------------- 64 (258)
T d1e32a2 2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----------------- 64 (258)
T ss_dssp CGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----------------
T ss_pred ChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCC-----------------
Confidence 699999999999999887531 2 45678999999999999999999999873
Q ss_pred cchhhhccCCCccEEEEccCC----C--cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH-----------HHHHH
Q psy13354 457 SVCVKIDNGCFMDYIEMDAAS----T--RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH-----------AFNAM 519 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~----~--~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~-----------~~~~L 519 (1342)
.++.++++. . .....++.+++.+... .+.||++||+|.+... ..+.+
T Consensus 65 ------------~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~----~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~ 128 (258)
T d1e32a2 65 ------------FFFLINGPEIMSKLAGESESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTHGEVERRIVSQL 128 (258)
T ss_dssp ------------EEEEECHHHHTTSCTTHHHHHHHHHHHHHHHT----CSEEEEESSGGGTCCHHHHCCCTTHHHHHHHH
T ss_pred ------------eEEEEEchhhcccccccHHHHHHHHHHHHHhc----CCeEEEehhhhhhccCCCCCCCchHHHHHHHh
Confidence 355555431 1 1234566666665433 3469999999987321 23444
Q ss_pred HHhhc--CCCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCC-c
Q psy13354 520 LKTLE--EPPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQG-S 593 (1342)
Q Consensus 520 l~~Le--~p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g-~ 593 (1342)
+..++ ...+.+++|++||.++.+++++++ |+ ..++|+.|+.++...+++..+++.... ++..++.|++.+.| +
T Consensus 129 ~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G~s 207 (258)
T d1e32a2 129 LTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHV 207 (258)
T ss_dssp HHHHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBC-TTCCHHHHHHHCTTCC
T ss_pred ccccccccccCCccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccc-cccchhhhhhcccCCC
Confidence 44443 345678889999999999999997 77 899999999999999999888765443 23347889999876 5
Q ss_pred HHHHHHHHHHHH
Q psy13354 594 MRDALSLTDQAI 605 (1342)
Q Consensus 594 lr~a~~~L~kl~ 605 (1342)
.+++.++++.+.
T Consensus 208 ~adl~~lv~~A~ 219 (258)
T d1e32a2 208 GADLAALCSEAA 219 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666655443
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.52 E-value=1.4e-13 Score=152.80 Aligned_cols=236 Identities=14% Similarity=0.085 Sum_probs=156.5
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHH-----cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALD-----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~-----~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
-+|...|.|+. ++|++..++.+.++|. .+..++++||+||||+|||++++.+++.+.+.... .....+|
T Consensus 7 ~~l~~~y~p~~---l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~---~~~~~~~ 80 (276)
T d1fnna2 7 SVFSPSYVPKR---LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA---RFVYING 80 (276)
T ss_dssp GGGSTTCCCSC---CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCC---EEEEEET
T ss_pred ccCCCCCCCCC---CCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCC---cEEEecc
Confidence 46788899965 5899888878777774 24566789999999999999999999999643211 1112223
Q ss_pred CCCcchhhhccCCCccEEEEccCCCcCHHH-HHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcC----CCC
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAASTRGINE-MAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEE----PPK 528 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~-i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~----p~~ 528 (1342)
..+........................... ...+.+..... ....++++|+++.+.....+.+...+.. ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 157 (276)
T d1fnna2 81 FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRER---DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAF 157 (276)
T ss_dssp TTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHT---TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSC
T ss_pred hhhhhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhc---ccccccchhHHHHhhhhhhhhHHHHHhcccccccc
Confidence 333222221111000000000111112222 33333333322 3445788899999887766666555543 234
Q ss_pred cEEEEEEeCCCC---CChHHHhccE--EEEEEcCCCHHHHHHHHHHHHHh--cCCCcchhHHHHHHHhc---------CC
Q psy13354 529 YIKFILATTEPQ---KIPITVLSRC--IQFNLKKMLHHDIVNNLCYILNK--ENIKFETSALNLIATGA---------QG 592 (1342)
Q Consensus 529 ~~vlIl~t~~~~---kl~~~L~sR~--~~i~~~~l~~~el~~~l~~~~~~--~g~~i~~~al~~La~~~---------~g 592 (1342)
.+.+|++++..+ .+.+.+.+|+ ..+.|++++.+++.+++.++++. ....+++++++.+++.+ +|
T Consensus 158 ~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G 237 (276)
T d1fnna2 158 RIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRG 237 (276)
T ss_dssp CEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSC
T ss_pred ceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcCC
Confidence 567788877643 5667888887 67899999999999999999886 34458999999998864 79
Q ss_pred cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 593 SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 593 ~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
|+|.++++++++...+ ...|+.+||+++...
T Consensus 238 ~~R~a~~ll~~a~~~A~~~~~~~I~~edv~~A~~~ 272 (276)
T d1fnna2 238 DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKE 272 (276)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 9999999999876654 245999999987743
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.52 E-value=6.2e-13 Score=153.08 Aligned_cols=250 Identities=19% Similarity=0.251 Sum_probs=176.4
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++....||+ .++.+.|.+.+++++ ||+.|+..++.+++++||+|+++...|++...... .+...|+.+..+
T Consensus 61 ~nPT~~~LE~----~la~LEgg~~a~~~s-SGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~v-- 133 (397)
T d1y4ia1 61 GNPTTDALEK----KLAVLERGEAGLATA-SGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFV-- 133 (397)
T ss_dssp SCHHHHHHHH----HHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEE--
T ss_pred CCHHHHHHHH----HHHHHhCCccceeeh-HHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeecc--
Confidence 5677777777 999999999999999 99999999999999999999998877776655443 456667755444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Di 222 (1342)
+.. |++.+++++++ +.++|++-.+.|| ...|+++|+++|+++|+++++|.+.+.... ..|++. +|+
T Consensus 134 d~~-----d~~~~~~~i~~-~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~-----~~Pl~~GaDi 202 (397)
T d1y4ia1 134 DAG-----KPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYC-----QQPLQLGADI 202 (397)
T ss_dssp CTT-----SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-----CCGGGGTCSE
T ss_pred CCC-----CHHHHHHhcCC-CCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCccc-----CcchhcCCCE
Confidence 544 78999998875 4567777666666 555999999999999999999998654332 345554 899
Q ss_pred EEecCCccCCCC---CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGP---RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 223 vv~S~sK~l~gp---~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++.|.+|+++|- .||+++++++.+...+........|....|..+.+. +.- ++ -+.-+.++..+|+..+.+.|
T Consensus 203 vihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~--~rg-l~-TL~lRm~~~~~nA~~lA~~L 278 (397)
T d1y4ia1 203 VVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLT--LRG-VK-TLGIRMERHCENALKIARFL 278 (397)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHH--HHH-HT-THHHHHHHHHHHHHHHHHHH
T ss_pred EEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHH--HcC-cC-cHHHHHHHHHHHHHHHHHHH
Confidence 999999999553 239999999877654422112223444455544332 222 22 45667889999999999999
Q ss_pred HhCC-cEEee-CCC---------------CCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 300 DQRG-IRIVS-GGT---------------KSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 300 ~~~g-~~~~~-~~~---------------~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
++.. +..+. ++- .+.++.+.+.. +.+.+.++++.-.+.-
T Consensus 279 ~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~---~~~~~~~f~~~L~l~~ 334 (397)
T d1y4ia1 279 EGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG---GLEAGRRMINSVELCL 334 (397)
T ss_dssp HTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETT---HHHHHHHHHHTCSSSE
T ss_pred HhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecC---CHHHHHHHHHcCCccc
Confidence 9864 43222 211 24466666654 2456678887655543
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.51 E-value=1.4e-13 Score=158.41 Aligned_cols=214 Identities=18% Similarity=0.267 Sum_probs=160.3
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++....||+ .++++.|.+.+++++ ||+.|+..++.+++++||+|++....|++...... .+...|+.+.++
T Consensus 57 ~nPT~~~LE~----~la~LEg~~~a~~~~-SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~-- 129 (392)
T d1gc0a_ 57 SNPTLNLLEA----RMASLEGGEAGLALA-SGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHV-- 129 (392)
T ss_dssp CCHHHHHHHH----HHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEE--
T ss_pred CChHHHHHHH----HHHHHhCCcceeehh-hHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccC--
Confidence 4666777777 899999999999998 99999999999999999999998888877665543 356667744444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Di 222 (1342)
+.. |++.++++++++ .++|++-.+.|| ...|+++|+++|+++|+++++|.+++...+ ..|++. +|+
T Consensus 130 d~~-----d~~~~~~ai~~~-t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~-----~~Pl~~GaDi 198 (392)
T d1gc0a_ 130 DMA-----DLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYL-----QRPLELGADL 198 (392)
T ss_dssp CTT-----CHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHH-----CCGGGGTCSE
T ss_pred Ccc-----CHHHHHHhCCCC-CeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccc-----cChHHhCCCE
Confidence 544 889999998764 466666555555 555999999999999999999999876655 345654 899
Q ss_pred EEecCCccCCCC---CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGP---RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 223 vv~S~sK~l~gp---~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++.|.+|+++|- .||.++++++.++.++........|+...|..+.+. +.. + +-+..+.++..+|+..+.+.|
T Consensus 199 vihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll--~rg-l-~TL~lRm~~~~~nA~~lA~~L 274 (392)
T d1gc0a_ 199 VVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALL--MRG-I-KTLNLRMDRHCANAQVLAEFL 274 (392)
T ss_dssp EEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHH--HHH-H-TTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHH--Hhc-c-ccHHHHHHHHHHHHHHHHHHH
Confidence 999999999552 339999999887665432222233444455544332 222 2 256677899999999999999
Q ss_pred HhC
Q psy13354 300 DQR 302 (1342)
Q Consensus 300 ~~~ 302 (1342)
++.
T Consensus 275 ~~h 277 (392)
T d1gc0a_ 275 ARQ 277 (392)
T ss_dssp HTC
T ss_pred HhC
Confidence 985
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.51 E-value=7.5e-14 Score=166.58 Aligned_cols=288 Identities=13% Similarity=0.104 Sum_probs=176.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCCce-EecCCHHHHHHHHHHHc--cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEe-
Q psy13354 70 FIDLIEKIAINRLKKIFNAEAAN-VQPHSGSQANQAVFFSV--LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICY- 145 (1342)
Q Consensus 70 ~~~~Le~~~~~~la~~~g~~~~v-i~~~sGs~A~~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~- 145 (1342)
....++..+..++.+.+|.+... ++.++|+.++.+++++. ..+++.|+++.. .|.+....+...|.....++.
T Consensus 110 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~---~H~s~~k~~~~~g~~~~~v~~~ 186 (434)
T d2z67a1 110 IMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYA---SHKSPIKAVSFVGMNMRLVETV 186 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECC---CCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEecc---CCHHHHHHHHHhCCcceEEEee
Confidence 34566777777888899987443 44546666777777776 347899997764 455556666777876555542
Q ss_pred cCCCCCCCCHHHHHHHHHhc----CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC-CCCC-
Q psy13354 146 GLNKKEKIDYKKVEYLAKKN----KPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY-PNPV- 217 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~----~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~-~~~l- 217 (1342)
+.++++.+|+++|++++.+. ...+|+...+++. ...|+++|+++|++||+|+++|+||+.+....... ..+.
T Consensus 187 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~ 266 (434)
T d2z67a1 187 LDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFK 266 (434)
T ss_dssp EETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHT
T ss_pred cCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhcccccccccc
Confidence 33466889999999999752 3445555555543 45589999999999999999999997544211100 0111
Q ss_pred CCCcEEEecCCccCCCCCe-eEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q psy13354 218 PFADFITSTTHKSLRGPRG-GFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKIL 295 (1342)
Q Consensus 218 ~~~Divv~S~sK~l~gp~G-G~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l 295 (1342)
..+|++++|+||++++|.| |+++.++ .+.+.+.... .+. +...+ ...+.+++......++....++..++++++
T Consensus 267 ~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l 342 (434)
T d2z67a1 267 YRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSY-PGR--ASATP-VVNTLVSLLSMGSKNYLELVKNQKNSKKLL 342 (434)
T ss_dssp SCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTS-CSC--BCSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEcCccccccCCCccccccCcHHHHHHHHhhc-ccc--cccch-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1379999999999988888 6665554 5566665432 222 22222 233333444444456777888888999999
Q ss_pred HHHHHhC----CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCC-----Ccccccccccccccc
Q psy13354 296 SKILDQR----GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPE-----KPYFTSGIRLGSSAI 366 (1342)
Q Consensus 296 ~~~L~~~----g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~-----~~~~~~~lRi~~~~~ 366 (1342)
.+.|++. |+.+... .....+.+... .+..++.. .|.+.||.......+..+. ..+...++|++++..
T Consensus 343 ~~~L~~l~~~~g~~ll~~-~~~~~~~~~~~--~~~~~l~~-~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~ 418 (434)
T d2z67a1 343 DELLNDLSKKTGGKFLDV-ESPIASCISVN--SDPVEIAA-KLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIG 418 (434)
T ss_dssp HHHHHHHHHHSSCCBCCC-CCSSEEEEECS--SCHHHHHH-HHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTT
T ss_pred HHHHHHhhhhcCceecCC-CCCceeeeecC--CCHHHHHH-HHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCCC
Confidence 8888763 5555432 22222233322 22334444 4555698765443333221 111134577776665
Q ss_pred cc
Q psy13354 367 TT 368 (1342)
Q Consensus 367 ~t 368 (1342)
+|
T Consensus 419 ~T 420 (434)
T d2z67a1 419 VR 420 (434)
T ss_dssp CC
T ss_pred CC
Confidence 44
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.50 E-value=2.7e-13 Score=159.89 Aligned_cols=307 Identities=12% Similarity=0.112 Sum_probs=182.5
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc---
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV--- 109 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al--- 109 (1342)
++..++|..+++++.+.+.+.+. ++...... .....++.+.+++.+++++|++ +.++++.++|++++.++...
T Consensus 34 as~g~~p~~v~~a~~~~l~~~~~--~~~~~~~~-~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~ 110 (404)
T d1qz9a_ 34 NSLGARPVAALARAQAVIAEEWG--NGLIRSWN-SAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRV 110 (404)
T ss_dssp TTSCCCBTTHHHHHHHHHHTCCC--CCGGGHHH-HTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHhc--ccCccccc-chhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhh
Confidence 44567777799999888765432 21111111 1111245566888999999998 56666669999888766532
Q ss_pred ---cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHH
Q psy13354 110 ---LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFER 185 (1342)
Q Consensus 110 ---~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~ 185 (1342)
..+|+.|++.+..++.....+ ...+.... ....+.++..+++.+++++++.+..+.+.+.++.+ ...|+++
T Consensus 111 ~~~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~~ 185 (404)
T d1qz9a_ 111 QATRSPERRVIVTETSNFPTDLYI---AEGLADML--QQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQA 185 (404)
T ss_dssp HHHHSTTCCEEEEETTSCHHHHHH---HHHHHHHH--CSSCEEEEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHH
T ss_pred hcccCCCcEEEEeccccchHHHHH---Hhhhheee--eeceeccccccchhHHHhcCCCceEEEEecccccccceecHHH
Confidence 468899887765544322211 11111111 11222334567788888887755444555555555 5559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC----CCcEEEecCCccCCCCCe--eEEEEechhHHHHhhccCC----
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----FADFITSTTHKSLRGPRG--GFILMKKKYKKIINSAVFP---- 255 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----~~Divv~S~sK~l~gp~G--G~iv~~~~l~~~l~~~~~~---- 255 (1342)
|+++|+++|+++++|.+|+.|.. +++ .+|++++|.|||++++.| |+++.++...+.+......
T Consensus 186 i~~~~~~~~~~~~vD~~q~~g~~-------~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 258 (404)
T d1qz9a_ 186 LTALSHECGALAIWDLAHSAGAV-------PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGH 258 (404)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTS-------CCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGB
T ss_pred HhccccccccceeEEeecccccc-------ccccccccceEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCc
Confidence 99999999999999999998876 333 379999999999866554 7888877655443321110
Q ss_pred ------------------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH---HH-hCCcEEeeCCCC-
Q psy13354 256 ------------------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI---LD-QRGIRIVSGGTK- 312 (1342)
Q Consensus 256 ------------------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~---L~-~~g~~~~~~~~~- 312 (1342)
+..+++.......+..+.............++.......+... +. ..|+.++.+...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~ 338 (404)
T d1qz9a_ 259 SRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHA 338 (404)
T ss_dssp CTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGG
T ss_pred cccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCcc
Confidence 1113333444444444444444434555555555555444433 32 257887653221
Q ss_pred --CeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc-cccc
Q psy13354 313 --SHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA-ITTR 369 (1342)
Q Consensus 313 --~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~-~~t~ 369 (1342)
+.++.+.+++ +.++. +.|.++||.+... . ++.+|+|++. ++|.
T Consensus 339 ~r~~~vsf~~~~---~~~v~-~~L~~~gi~~~~r-~---------~~~lRiS~~h~ynt~ 384 (404)
T d1qz9a_ 339 KRGSHVSFEHPE---GYAVI-QALIDRGVIGDYR-E---------PRIMRFGFTPLYTTF 384 (404)
T ss_dssp GBCSEEEEECTT---HHHHH-HHHHTTTEECEEE-T---------TTEEEEECCTTTCCH
T ss_pred ceeeEEEEecCC---HHHHH-HHHHHCCCEEeec-C---------CCeEEEECCCCCCCH
Confidence 3456666553 33444 5556679976521 0 2469999864 6663
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=7.2e-14 Score=168.31 Aligned_cols=273 Identities=17% Similarity=0.145 Sum_probs=168.9
Q ss_pred CCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeec------cCCccchhhHHh
Q psy13354 60 PGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSL------QEGGHLTHGMML 133 (1342)
Q Consensus 60 ~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~------~~~~~~s~~~~~ 133 (1342)
.++..|++++...+||+ .+++++|.+.++.++ ||+.|+..++.+++.+||.++.... .+..+.......
T Consensus 65 ~gd~~Y~~~~~~~~le~----~~a~l~G~~~~~~~~-sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~ 139 (467)
T d2v1pa1 65 RGDEAFSGSRSYYALAE----SVKNIFGYQYTIPTH-QGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHS 139 (467)
T ss_dssp SCCCCSSSCHHHHHHHH----HHHHHTCCSEEEEEC-SSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHH
T ss_pred ccchhhcCCchHHHHHH----HHHHHHCCCEEEECC-CCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHH
Confidence 44566888888888887 889999999886666 9999999999999887776543221 122233334445
Q ss_pred hhCCceeEEEEecCC--------CCCCCCHHHHHHHHHhcCC---eEEEEcCCCCC------cccCHHHHHHHHHHcCCE
Q psy13354 134 NMSGKWFNSICYGLN--------KKEKIDYKKVEYLAKKNKP---KLIIAGASAYS------QYIDFERFYHIAKNINSY 196 (1342)
Q Consensus 134 ~~~g~~~~~v~~~~~--------~~~~id~e~Le~~i~~~~~---~liv~~~s~~~------~~~~l~~I~~la~~~gi~ 196 (1342)
...|..+..+..+.. ..+.+|++++++.+.+.++ +++++.+.++. ...++++|.++|++||++
T Consensus 140 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~ 219 (467)
T d2v1pa1 140 QINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIP 219 (467)
T ss_dssp HHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCE
Confidence 666764444432211 2456899999999886543 44555443332 233789999999999999
Q ss_pred EEEEcccchhhhhcC-------CCCC-------CCCCCcEEEecCCccCCCCCeeEEEEechhHHH-H---hh----ccC
Q psy13354 197 FMVDMAHYAGLIAAG-------EYPN-------PVPFADFITSTTHKSLRGPRGGFILMKKKYKKI-I---NS----AVF 254 (1342)
Q Consensus 197 LIvDea~~~g~~~~~-------~~~~-------~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~-l---~~----~~~ 254 (1342)
||+|+||..+..... ...+ ....+|++++|.+|.++++.||+++++++.... . +. ...
T Consensus 220 l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~ 299 (467)
T d2v1pa1 220 VVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEG 299 (467)
T ss_dssp EEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTS
T ss_pred EEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhhccccccccc
Confidence 999999976543211 0011 122469999999999988888999988753322 1 11 111
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEcc----CC----CCC
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLR----NK----KIT 326 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~----~~----~~~ 326 (1342)
...+++.......+++..+..... .++.++..++++++.+.|.+.++.+.. ...+.+.++.. .. ...
T Consensus 300 ~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~ 374 (467)
T d2v1pa1 300 FPTYGGLEGGAMERLAVGLYDGMN---LDWLAYRIAQVQYLVDGLEEIGVVCQQ--AGGHAAFVDAGKLLPHIPADQFPA 374 (467)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCEEE--ECSSCEEEEHHHHSTTSCGGGCHH
T ss_pred CcchhhhHHHHHHHHHHHhHHhhh---HHHHHHHHHHHHHHHHHHHhcCCcccC--CCccceeecchhhcCCcchhhhhh
Confidence 111222222222333333333222 356677788999999999998876643 23444444321 11 112
Q ss_pred HHHHHHHHHHCCceee
Q psy13354 327 GKIAESILESANIICN 342 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~ 342 (1342)
......++.+.||...
T Consensus 375 ~~~~~~ll~~~Gi~~~ 390 (467)
T d2v1pa1 375 QALACELYKVAGIRAV 390 (467)
T ss_dssp HHHHHHHHHHHCEECE
T ss_pred HHHHHHHHHHcCCeee
Confidence 3456677778898664
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.48 E-value=1.5e-14 Score=159.51 Aligned_cols=52 Identities=23% Similarity=0.409 Sum_probs=48.2
Q ss_pred EecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHHH------HHHHHHHHHHHHHH
Q psy13354 1042 IIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEE------AASQGLLAGLNAAL 1099 (1342)
Q Consensus 1042 i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~e------A~~~G~~Ag~na~~ 1099 (1342)
+|.||+++++ |||+ |||||.+|||||+||++|++|.++ ||++|++||.+++.
T Consensus 195 ~~~ggv~~~~--i~~~----t~es~~~~gl~~~ge~ldv~g~~gg~n~~~a~~s~~~~~~~~~~ 252 (253)
T d2gqfa1 195 VTMGGVDTKV--ISSK----TMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR 252 (253)
T ss_dssp EEEEEECGGG--BCTT----TCBBSSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCcccc--cCcc----chhhhcCCCcEEeeeEEEeeeecCCEehhhhHhHHHHHHHHHhc
Confidence 8899999999 9999 999999999999999999877663 99999999999874
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=3.8e-12 Score=146.18 Aligned_cols=249 Identities=16% Similarity=0.207 Sum_probs=169.3
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++....||+ .++++-|.+.+++|+ ||+.|+..++.+++++||+|++....+++...... .+...|. ....+
T Consensus 48 ~nPt~~~le~----~la~LEgg~~a~~~s-SGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~--~~~~~ 120 (384)
T d1cs1a_ 48 GNPTRDVVQR----ALAELEGGAGAVLTN-TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFV 120 (384)
T ss_dssp CCHHHHHHHH----HHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSC--EEEEE
T ss_pred CCHHHHHHHH----HHHHHhCCCceEEec-ChHHHHHHHHhhcccccceecccccccchhhhhhhhhhccccc--ccccc
Confidence 4677777777 999999999999999 99999999999999999999998777765544433 3344455 33333
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Di 222 (1342)
+.. |.+.+++.+.++ +++|++-.+.|| ...|+++|+++|+++|+++|||...+...+ ..|++. +|+
T Consensus 121 d~~-----d~~~~~~~~~~~-t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~-----~~Pl~~GaDi 189 (384)
T d1cs1a_ 121 DQG-----DEQALRAALAEK-PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPAL-----QNPLALGADL 189 (384)
T ss_dssp CTT-----CHHHHHHHHHTC-CSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-----CCGGGGTCSE
T ss_pred cCC-----CHHHHHhhcccc-ccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCccc-----ccccccCCCE
Confidence 433 788999988875 456666555555 555999999999999999999998654333 445654 899
Q ss_pred EEecCCccCCCC---CeeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGP---RGGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp---~GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
++.|.+|+++|- .||+++++. ++.+.+... ....|....|..+.+ .+ .-++ -+.-+.++..+|+..+.+.
T Consensus 190 VvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~--~~~~G~~~~p~~a~l--l~-rgL~-TL~lRm~~~~~nA~~lA~~ 263 (384)
T d1cs1a_ 190 VLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW--ANNIGVTGGAFDSYL--LL-RGLR-TLVPRMELAQRNAQAIVKY 263 (384)
T ss_dssp EEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH--HHHHTCBCCHHHHHH--HH-HHHT-THHHHHHHHHHHHHHHHHH
T ss_pred EEEccccccccCCCcccccccCCchhhhhhhhhh--hhhhhhccccccHHH--Hh-hccc-hhHHHHHHHHHHHHHHHHh
Confidence 999999999543 228888865 444444332 112333334443332 22 2232 5666789999999999999
Q ss_pred HHhCC-cEEee-CC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCceee
Q psy13354 299 LDQRG-IRIVS-GG---------------TKSHIILVDLRNKKITGKIAESILESANIICN 342 (1342)
Q Consensus 299 L~~~g-~~~~~-~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~ 342 (1342)
|++.. +..+. ++ ..+.++.+.+.. +.+.+.++++.-.++..
T Consensus 264 L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~---~~~~a~~f~~~L~l~~~ 321 (384)
T d1cs1a_ 264 LQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG---DEQTLRRFLGGLSLFTL 321 (384)
T ss_dssp HTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---CHHHHHHHHHTCSSSEE
T ss_pred cccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecc---hHHHHHHHHHhCCccee
Confidence 99854 33222 11 113356666654 34667788877555443
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.45 E-value=4.3e-13 Score=161.41 Aligned_cols=272 Identities=18% Similarity=0.171 Sum_probs=167.7
Q ss_pred CCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEE------eeccCCccchhhHHhhh
Q psy13354 62 KRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMG------MSLQEGGHLTHGMMLNM 135 (1342)
Q Consensus 62 ~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv------~~~~~~~~~s~~~~~~~ 135 (1342)
...|++.+...+|++ .+++++|.+.+++++ ||++|+..++.+++++|++++. .... .+.+.......
T Consensus 68 d~~y~~~~~~~~le~----~~a~l~g~~~~~~~~-sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~--h~~t~~~~~~~ 140 (465)
T d1ax4a_ 68 DEAYAGSRNYYDLKD----KAKELFNYDYIIPAH-QGRGAENILFPVLLKYKQKEGKAKNPVFISNF--HFDTTAAHVEL 140 (465)
T ss_dssp CCCSSSCHHHHHHHH----HHHHHHCCCEEEEES-SHHHHHHHHHHHHHHHHHHTTCCSSCEEEESS--CCHHHHHHHHH
T ss_pred hhhhccChHHHHHHH----HHHHHHCCCEEEECC-CcHHHHHHHHHHHHHHHHhcCCCCCeEEeccc--hhhhhHHHHHH
Confidence 345777887888887 788899998776666 9999999999999776554321 1111 12222333344
Q ss_pred CCceeEEEEec--------CCCCCCCCHHHHHHHHHhcC---CeEEEEcCCCCC------cccCHHHHHHHHHHcCCEEE
Q psy13354 136 SGKWFNSICYG--------LNKKEKIDYKKVEYLAKKNK---PKLIIAGASAYS------QYIDFERFYHIAKNINSYFM 198 (1342)
Q Consensus 136 ~g~~~~~v~~~--------~~~~~~id~e~Le~~i~~~~---~~liv~~~s~~~------~~~~l~~I~~la~~~gi~LI 198 (1342)
.|........+ ....+.+|++++++++++.. ..++++.+++++ ...++++|.++|++||++||
T Consensus 141 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~ 220 (465)
T d1ax4a_ 141 NGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVV 220 (465)
T ss_dssp TTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEE
T ss_pred cCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEE
Confidence 45432222111 12457889999999998643 345555555544 22368999999999999999
Q ss_pred EEcccchhhhhcC-----CCCC---------CCCCCcEEEecCCccCCCCCeeEEEEechh--HHHHh----hccCCccc
Q psy13354 199 VDMAHYAGLIAAG-----EYPN---------PVPFADFITSTTHKSLRGPRGGFILMKKKY--KKIIN----SAVFPGIQ 258 (1342)
Q Consensus 199 vDea~~~g~~~~~-----~~~~---------~l~~~Divv~S~sK~l~gp~GG~iv~~~~l--~~~l~----~~~~~~~~ 258 (1342)
+|++|..+..+.+ .+.. ....+|++++|.+|.++++.||++++++.. ..... .......+
T Consensus 221 ~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (465)
T d1ax4a_ 221 MDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTY 300 (465)
T ss_dssp EECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTT
T ss_pred EECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchHHHHHhhhccccccccCCCc
Confidence 9999976543211 0000 112358999999999977777999888642 22111 11112222
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC--------CCHHHH
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK--------ITGKIA 330 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~--------~~~~~~ 330 (1342)
++.......++...+.+... +.+.++..++++++.+.|++.|+++.. +...+.+.++..... ......
T Consensus 301 ~~~~~~~~~a~~~~~~e~~~---~~~~~~~~~~~~~l~~~L~~~g~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (465)
T d1ax4a_ 301 GGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLREAGIPIQY-PTGGHAVFVDCKKLVPQIPGDQFPAQAVI 376 (465)
T ss_dssp TTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCBCS-SCCSSEEEEESTTTCTTSCGGGCHHHHHH
T ss_pred chhhHHHHHHHhhhhHHhhh---HHHHHHHHHHHHHHHHHHHhhcCcccc-CCCcceeeeehhhhcCCCccccchhHHHH
Confidence 22222233333333333222 345566777889999999999988754 456677776653311 124567
Q ss_pred HHHHHHCCceeeec
Q psy13354 331 ESILESANIICNKN 344 (1342)
Q Consensus 331 ~~ll~~~GI~v~~~ 344 (1342)
..++.+.||.+...
T Consensus 377 ~~ll~~~GI~~~~~ 390 (465)
T d1ax4a_ 377 NALYLESGVRAVEI 390 (465)
T ss_dssp HHHHHHHCEECEEE
T ss_pred HHHHHhcCceeccc
Confidence 77777889987654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.45 E-value=8.2e-13 Score=147.37 Aligned_cols=238 Identities=16% Similarity=0.160 Sum_probs=140.2
Q ss_pred HHhhccCCCCccccccchhhHHHHHHH----HHcCCCC----cEEEEEccCcccHHHHHHHHHHHhccCCCCCC--CCcc
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINA----LDKKRLH----HAYLFTGTRGVGKTTISRILAKCLNCIGIDGN--GGIT 449 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~----l~~~~~~----~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~--~~~~ 449 (1342)
+|..+|+|.. ++|++..++.|.+. +.+|..+ .+++|+||||||||++++.+++.+........ ....
T Consensus 8 ~l~~~~~P~~---~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~ 84 (287)
T d1w5sa2 8 VFDENYIPPE---LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 84 (287)
T ss_dssp GGSTTCCCSS---CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hcCCccCCCC---CCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceee
Confidence 5778899865 45665555555444 4444433 25788999999999999999999863211000 0000
Q ss_pred cCCCCCCcchhhhccCCCccEEEEccCCCcCHHH-HHHHHHHHhhcCccCCceEEEeccCccC------CHHHHHHHHHh
Q psy13354 450 SQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINE-MAQLLEQTIYAPINARYKIYVIDEVHML------THHAFNAMLKT 522 (1342)
Q Consensus 450 ~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~-i~~ii~~~~~~p~~~~~rvviIDE~~~L------~~~~~~~Ll~~ 522 (1342)
+.+|..+.+-........................ .+.+.+.... .....++++||++.+ ..+....|...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l 161 (287)
T d1w5sa2 85 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYV---ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRV 161 (287)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH---HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTH
T ss_pred eeccccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHh---ccCccccceeEEEEeccccccchhHHHHHHHH
Confidence 0111111000000000000000000001111122 2222222211 234568889999876 23344445444
Q ss_pred hcC-----CCCcEEEEEEeCCCC------CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhc--CCCcchhHHHHHHH
Q psy13354 523 LEE-----PPKYIKFILATTEPQ------KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKE--NIKFETSALNLIAT 588 (1342)
Q Consensus 523 Le~-----p~~~~vlIl~t~~~~------kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~--g~~i~~~al~~La~ 588 (1342)
++. ......+|++++..+ ...+.+.+|. ..+.|++++.+++.+++..+++.. ...+++++++++++
T Consensus 162 ~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~ 241 (287)
T d1w5sa2 162 HEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 241 (287)
T ss_dssp HHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred HHhcchhhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHH
Confidence 332 124556666666544 2234666664 899999999999999999999764 44689999999998
Q ss_pred hc------CCcHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 589 GA------QGSMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 589 ~~------~g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
.+ .||+|.+++.|+.+...+ ...||.++|++++.+
T Consensus 242 ~~~~~~~~~gd~R~ai~~l~~a~~~A~~~~~~~It~~~V~~A~~e 286 (287)
T d1w5sa2 242 VYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 286 (287)
T ss_dssp HHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHhccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhc
Confidence 76 699999999999877654 245999999998854
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=5.9e-14 Score=155.21 Aligned_cols=187 Identities=19% Similarity=0.281 Sum_probs=130.9
Q ss_pred CC-CccccccchhhHHHHHHHHH----c-------C-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 387 PS-NFNTLIGQNHISKSLINALD----K-------K-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 387 p~-~f~~lvGq~~~~~~L~~~l~----~-------~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
|+ +|++++|.+++++.|.+.+. + | ..+.++|||||||||||++++++|+++++
T Consensus 2 p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~-------------- 67 (265)
T d1r7ra3 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 67 (265)
T ss_dssp CCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTC--------------
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCC--------------
Confidence 44 89999999999888777653 1 3 34568999999999999999999999974
Q ss_pred CCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH-------------
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH------------- 514 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~------------- 514 (1342)
.++.++.+. ......++.++..+... .+-||+|||+|.+...
T Consensus 68 ---------------~~~~~~~~~l~~~~~~~~~~~l~~~f~~A~~~----~p~il~ideid~l~~~~~~~~~~~~~~~~ 128 (265)
T d1r7ra3 68 ---------------NFISIKGPELLTMWFGESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAAD 128 (265)
T ss_dssp ---------------EEEEECHHHHHTSCTTTHHHHHHHHHHHHHHT----CSEEEEESSGGGTCCHHHHCCCTTHHHHH
T ss_pred ---------------cEEEEEHHHhhhccccchHHHHHHHHHHHHhc----CCcceeHHhhhhccccCCCcCCCCcHHHH
Confidence 344544321 11224566777666543 3469999999977311
Q ss_pred -HHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 515 -AFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 515 -~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
..+.|+..++.. ...+++|++||.++.+++++++ |+ ..++|++|+.++..++++..+++.... .+..++.|++
T Consensus 129 ~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 207 (265)
T d1r7ra3 129 RVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAK 207 (265)
T ss_dssp HHHHHHHHTCC------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC-----CCCCHHHHH
T ss_pred HHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCch-hhhhHHHHHh
Confidence 346778888643 3457888999999999999985 66 789999999999999998777653332 2334677887
Q ss_pred hcCC-cHHHHHHHHHHHHhh
Q psy13354 589 GAQG-SMRDALSLTDQAINY 607 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~ 607 (1342)
.+.| +.+++.++++.+...
T Consensus 208 ~t~g~s~~di~~lv~~A~~~ 227 (265)
T d1r7ra3 208 MTNGFSGADLTEICQRACKL 227 (265)
T ss_dssp HHCSSCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 7654 666666666655443
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.44 E-value=1.9e-12 Score=149.18 Aligned_cols=214 Identities=18% Similarity=0.183 Sum_probs=156.3
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++....||+ +++++.|.+.+++++ ||+.|+..++.+++++||+|++....|++...... .+...|+.+..+
T Consensus 65 ~nPt~~~LE~----~la~LEgg~~a~~~s-SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~-- 137 (398)
T d1qgna_ 65 GNPTTVVLEE----KISALEGAESTLLMA-SGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVI-- 137 (398)
T ss_dssp CCHHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE--
T ss_pred CChHHHHHHH----HHHHHhCCceEEEec-CcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccc--
Confidence 4676777777 999999999999999 99999999999999999999998877776555433 355666644333
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Di 222 (1342)
+.. +.+..++.+...+.++|++-.+.|| ...|+++|+++|+++|+++|||.+.+.... ..|++. +|+
T Consensus 138 ~~~-----~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~-----~~Pl~~GaDi 207 (398)
T d1qgna_ 138 DPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN-----QKALALGADL 207 (398)
T ss_dssp CSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-----CCTTTTTCSE
T ss_pred ccc-----chhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeecccc-----CCchhhCCCE
Confidence 322 5555555555556777777666666 555999999999999999999998654333 456665 899
Q ss_pred EEecCCccCCCC---CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGP---RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 223 vv~S~sK~l~gp---~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++.|.+|+++|- .||+++.++++.+.++... ...|...+|..+.+. .+.++ -+..+.++..+|+..+.+.|
T Consensus 208 VihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~--~~~G~~l~p~~a~ll---~rgl~-TL~lRm~~~~~nA~~lA~~L 281 (398)
T d1qgna_ 208 VLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH--HILGGALNPNAAYLI---IRGMK-TLHLRVQQQNSTALRMAEIL 281 (398)
T ss_dssp EEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHH--HHHCCCCCHHHHHHH---HHHGG-GHHHHHHHHHHHHHHHHHHH
T ss_pred EEEechhhcCcccceeehhhcchhhhhhhhhhhc--ccCCCcCCHHHHHHH---Hhcch-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999553 2388888888877776532 233444444444332 22232 56677899999999999999
Q ss_pred HhCC
Q psy13354 300 DQRG 303 (1342)
Q Consensus 300 ~~~g 303 (1342)
++..
T Consensus 282 ~~hp 285 (398)
T d1qgna_ 282 EAHP 285 (398)
T ss_dssp HTCT
T ss_pred HhCC
Confidence 9853
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.44 E-value=1.1e-12 Score=148.67 Aligned_cols=208 Identities=18% Similarity=0.192 Sum_probs=150.7
Q ss_pred HHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCCHHH
Q psy13354 79 INRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKIDYKK 157 (1342)
Q Consensus 79 ~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id~e~ 157 (1342)
.++++++-|.+.+++|+ ||++|+..++.++++|||+|+++...|++..... ..+...|+.+.+ ++.. |++.
T Consensus 4 E~~la~Leg~~~a~~~s-SGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~--~d~~-----d~~~ 75 (331)
T d1pffa_ 4 EGKIAKLEHAEACAATA-SGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDF--IDMA-----VPGN 75 (331)
T ss_dssp HHHHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEE--ECTT-----STTH
T ss_pred HHHHHHHhCCCeEEEEC-CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEE--eccc-----chhh
Confidence 34899999999999998 9999999999999999999999887776655543 345667775444 4544 7788
Q ss_pred HHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHH-HHcCCEEEEEcccchhhhhcCCCCCCCCC-CcEEEecCCccCCCC
Q psy13354 158 VEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIA-KNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADFITSTTHKSLRGP 234 (1342)
Q Consensus 158 Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la-~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Divv~S~sK~l~gp 234 (1342)
+++++++.+..+++-+++|++ ...|++++++++ +++|+++|+|...+.... ..|++. +|+++.|.+|+++|-
T Consensus 76 ~~~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~-----~~pl~~GaDiVv~S~TKy~~Gh 150 (331)
T d1pffa_ 76 IEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPIL-----TNPLDLGVDIVVHSATKYINGH 150 (331)
T ss_dssp HHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHH-----CCGGGGTCSEEEEETTTTTSSS
T ss_pred HhhhcccccceeeeecccccccccccchhhhhhhhcccCceEEeecccccccc-----ccccccCCCEEEecchhhcCCC
Confidence 888887644444444455555 555899999885 578999999998765544 346664 899999999999552
Q ss_pred ---CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 235 ---RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 235 ---~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
.||+++++++.....+........|....|..+.+...-.+ -+..+.++..+|+..+.+.|++..
T Consensus 151 ~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~----Tl~~Rm~~~~~nA~~lA~~L~~hp 218 (331)
T d1pffa_ 151 TDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTL----TLDMRVKRAAENAQKVAEFLHEHK 218 (331)
T ss_dssp SSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhCC
Confidence 33999998877666554333444555556555544332222 455678899999999999999853
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=2.2e-12 Score=154.06 Aligned_cols=267 Identities=12% Similarity=0.013 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHHHHHHhCCC--CceEecCCHHH-HHHHHHHHc---cCCCCEEEEeeccCCccchhhHHhhhCCceeEEE
Q psy13354 70 FIDLIEKIAINRLKKIFNAE--AANVQPHSGSQ-ANQAVFFSV---LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSI 143 (1342)
Q Consensus 70 ~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~-A~~~al~al---~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v 143 (1342)
....++.++.+++++++|.+ ...+++++|+. ++.+++.++ ..++++|+++. ..|.+...++...|.....+
T Consensus 91 ~~~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~---~~H~s~~~a~~~~g~~~~~v 167 (445)
T d3bc8a1 91 LLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPR---IDQKSCFKSMVTAGFEPVVI 167 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEEC---CCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcC---cccHHHHHHHHHcCCeeEEE
Confidence 34578888999999999976 33344435554 555555554 45678888666 44566667777888765555
Q ss_pred Ee-cCCCCCCCCHHHHHHHHHhc---CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC---C
Q psy13354 144 CY-GLNKKEKIDYKKVEYLAKKN---KPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY---P 214 (1342)
Q Consensus 144 ~~-~~~~~~~id~e~Le~~i~~~---~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~---~ 214 (1342)
.. +.++++.+|++++++++.+. .+.+|+++.+++. ...|+++|+++|++||++|++|+||+.+..+.... .
T Consensus 168 ~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 247 (445)
T d3bc8a1 168 ENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQG 247 (445)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH
T ss_pred EeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhc
Confidence 32 34577999999999999753 2345555554443 55599999999999999999999998654321110 0
Q ss_pred CCCCCCcEEEecCCccCCCCCe-eEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q psy13354 215 NPVPFADFITSTTHKSLRGPRG-GFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNA 292 (1342)
Q Consensus 215 ~~l~~~Divv~S~sK~l~gp~G-G~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a 292 (1342)
..+..+|++++|+||++++|.| |+++.++ .+.+.+......+. +..+. ..+...+............+...+++
T Consensus 248 ~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~ 323 (445)
T d3bc8a1 248 ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRA---SASPS-LDVLITLLSLGCSGYRKLLKERKEMF 323 (445)
T ss_dssp HHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSCB---CSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhhcc---cCcch-HHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 1123469999999999988888 6666655 45555544322221 11222 22233333333345666677777888
Q ss_pred HHHHHHHHh----CCcEEeeCCCCCeEEEEEccCC----CCCHHHHHHHHHHCCceeee
Q psy13354 293 KILSKILDQ----RGIRIVSGGTKSHIILVDLRNK----KITGKIAESILESANIICNK 343 (1342)
Q Consensus 293 ~~l~~~L~~----~g~~~~~~~~~~~~v~i~~~~~----~~~~~~~~~ll~~~GI~v~~ 343 (1342)
+++.+.|.+ .|..+...+......++.+... ......+...|.+.||....
T Consensus 324 ~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~ 382 (445)
T d3bc8a1 324 VYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGAR 382 (445)
T ss_dssp HHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCE
T ss_pred HHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcce
Confidence 888887765 3544433233344444444321 11223334445555886543
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=2.5e-12 Score=148.42 Aligned_cols=213 Identities=12% Similarity=0.130 Sum_probs=155.0
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++....||+ .++++-|.+.+++++ ||+.|+..++.+++++||+|++....|++...... .+...|+.+.. +
T Consensus 56 ~nPt~~~le~----~la~LEg~~~a~~~~-SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~--~ 128 (391)
T d1cl1a_ 56 GTLTHFSLQQ----AMCELEGGAGCVLFP-CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSW--F 128 (391)
T ss_dssp CCHHHHHHHH----HHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEE--E
T ss_pred CChhHHHHHH----HHHHHhCCccEEEec-cccceeeehhhcccCCCCeEEEecccccchhhhhhhccccccccccc--c
Confidence 4676777777 999999999999999 99999999999999999999998888877655543 35566664443 3
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCCC-C
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVPF-A 220 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~~-~ 220 (1342)
+.. |.+.+++++++. .++|++-.+.|| ...|+++|+++|+++ |+++|||...+.... ..|++. +
T Consensus 129 d~~-----d~~~~~~~i~~~-t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~-----~~Pl~~Ga 197 (391)
T d1cl1a_ 129 DPL-----IGADIVKHLQPN-TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL-----FKALDFGI 197 (391)
T ss_dssp CTT-----CGGGGGGTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS-----SCGGGGTC
T ss_pred cCc-----cccccccccccc-cceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhh-----hccccccc
Confidence 433 667777777653 466666555555 555999999999775 999999998654333 446654 8
Q ss_pred cEEEecCCccCCCC---CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q psy13354 221 DFITSTTHKSLRGP---RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297 (1342)
Q Consensus 221 Divv~S~sK~l~gp---~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~ 297 (1342)
|+++.|.+|+++|- .||.++.+++..+.+..... ..+....|..+.+. + +-++ -+..+.++..+|+..+.+
T Consensus 198 DivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~--~~G~~~~p~~a~ll--~-rgl~-TL~lR~~~~~~nA~~vA~ 271 (391)
T d1cl1a_ 198 DVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAY--LMGQMVDADTAYIT--S-RGLR-TLGVRLRQHHESSLKVAE 271 (391)
T ss_dssp SEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHH--HTTCCCCHHHHHHH--H-HHHT-THHHHHHHHHHHHHHHHH
T ss_pred ceEEeecchhccccccccccceeccccccccchhhhh--cccccCCchhhhhh--h-ccch-hHHHHHHHHHHHHHHHHH
Confidence 99999999999653 33999998887777665322 33444444443322 2 2222 566678899999999999
Q ss_pred HHHhCC
Q psy13354 298 ILDQRG 303 (1342)
Q Consensus 298 ~L~~~g 303 (1342)
.|++..
T Consensus 272 ~L~~hp 277 (391)
T d1cl1a_ 272 WLAEHP 277 (391)
T ss_dssp HHHTCT
T ss_pred HHHhcc
Confidence 999864
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.39 E-value=6.9e-12 Score=141.27 Aligned_cols=306 Identities=15% Similarity=0.088 Sum_probs=173.4
Q ss_pred ecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc
Q psy13354 34 ASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 34 a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~ 110 (1342)
+|+|.. +|.|++|+.+.... +..+ |+.. ++.+++++++++++|.+ ..+++++|||+|+..++..+.
T Consensus 5 ~nd~~~g~~P~v~eAl~~~~~~-~~~~------y~~~----~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~ 73 (340)
T d1svva_ 5 VNDYSVGMHPKILDLMARDNMT-QHAG------YGQD----SHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL 73 (340)
T ss_dssp SCSCSSCCCHHHHHHHHHHTTC-CCCS------TTCS----HHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC
T ss_pred ccCCCCCCCHHHHHHHHHHhhc-CCCC------CCCC----HHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHh
Confidence 445443 47799998876542 2112 2222 44455777999999988 456666699999999999999
Q ss_pred CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc------CCeEEEEcCCCCC-cc---
Q psy13354 111 NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN------KPKLIIAGASAYS-QY--- 180 (1342)
Q Consensus 111 ~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~------~~~liv~~~s~~~-~~--- 180 (1342)
.+++.++.....+..+............ ....... .+..+.+...+..... .+.+++.+.++++ ..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (340)
T d1svva_ 74 RPWEAVIATQLGHISTHETGAIEATGHK---VVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTK 149 (340)
T ss_dssp CTTEEEEEETTSHHHHSSTTHHHHTTCC---EEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCH
T ss_pred hhccccccccccceeeeeccccccccee---eeecccc-cccccchhHHHHhhhhhcccCCcceeeeecccccccccccH
Confidence 9999988755444333222222222222 2222222 2223444444433322 1234444444444 22
Q ss_pred cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC----CCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCc
Q psy13354 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----FADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 181 ~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~ 256 (1342)
.++..+.+.|+++|.++++|+++..+............ ..++...+.+|...++.+++..................
T Consensus 150 ~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (340)
T d1svva_ 150 QELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQR 229 (340)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHHHHT
T ss_pred HHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhhcccc
Confidence 25777899999999999999999766654332222111 13466667777763344455555443332222211111
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
..+.+......+++.+.. .........++..+++.++.+.|+..|+++.. |..++++++.++ .+....++++
T Consensus 230 ~~~~~~~~~~~aa~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-p~~~~~v~~~~~-----~~~~~~l~~~ 301 (340)
T d1svva_ 230 GALMAKGWLLGIQFEVLM--KDNLFFELGAHSNKMAAILKAGLEACGIRLAW-PSASNQLFPILE-----NTMIAELNND 301 (340)
T ss_dssp TCCCTTTHHHHHHHHHHT--STTHHHHHHHHHHHHHHHHHHHHHHTTCCBSS-CCSSSEECBEEE-----HHHHHHHTTT
T ss_pred cCccchhhHHHHHHHHHh--hhhHHHHHHHHHHHHHhhhHHHHhcCCCeeec-CCCceEEEEeCC-----HHHHHHHHHh
Confidence 111221222222222222 22345566788889999999999999998754 456778887764 3566677665
Q ss_pred CCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++..... ..+. ..+.+|++++..+|.
T Consensus 302 -~~~~~~~---~~~~---~~~~vR~s~~~~~t~ 327 (340)
T d1svva_ 302 -FDMYTVE---PLKD---GTCIMRLCTSWATEE 327 (340)
T ss_dssp -EECEEEE---EETT---TEEEEEEECCTTCCH
T ss_pred -hhhhccc---ccCC---CCcEEEEECCCCCCH
Confidence 3332221 1111 256799998877663
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.38 E-value=4.1e-12 Score=145.87 Aligned_cols=212 Identities=18% Similarity=0.182 Sum_probs=152.3
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++....||+ +++.+-|.+.+++|+ ||+.|+. ++.+++++||+|++....|++...... .....|+.+ ..+
T Consensus 47 ~nPt~~~le~----~la~LE~~~~a~~fs-SGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~--~~~ 118 (380)
T d1ibja_ 47 GNPTRDALES----LLAKLDKADRAFCFT-SGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVV--KRV 118 (380)
T ss_dssp CCHHHHHHHH----HHHHHHTCSEEEEES-SHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEE--EEE
T ss_pred CChHHHHHHH----HHHHHcCCceEEehh-hHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhccccccc--ccc
Confidence 4666667777 999999999999999 9999986 567889999999998877776655543 345556644 333
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Di 222 (1342)
+.. +++.+++++++ +.++|++..+.|| ...|+++|+++|+++|+++|||.+.+.... ..|++. +|+
T Consensus 119 d~~-----~~~~~~~ai~~-~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~-----~~Pl~~GaDi 187 (380)
T d1ibja_ 119 NTT-----KLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVL-----SRPLELGADI 187 (380)
T ss_dssp CTT-----SHHHHHHHCCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTT-----CCGGGTTCSE
T ss_pred Ccc-----hHHHHHHHhcc-CccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccccccc-----ccccccCCCE
Confidence 443 78889888865 5577777666666 556999999999999999999998654333 445554 899
Q ss_pred EEecCCccCCCC---CeeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGP---RGGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp---~GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
++.|.+|+++|- .||+++.++ ++.+.++... ...|....|..+.+. .+.+ +-+..+.++..+|+..+.+.
T Consensus 188 VvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~--~~~G~~l~p~~a~ll---~rgl-~Tl~lRm~~~~~nA~~lA~~ 261 (380)
T d1ibja_ 188 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ--NSEGSGLAPFDCWLC---LRGI-KTMALRIEKQQENARKIAMY 261 (380)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHH--HHTTCBCCHHHHHHH---HHHH-TTHHHHHHHHHHHHHHHHHH
T ss_pred EEecccceeccccCccccccccchhhHHHHHHhhc--cccCCcCCHHHHHHH---Hhcc-hhhhhhHHHHHHHHHHHHHH
Confidence 999999999552 228877775 4555554432 223444444444332 2222 25667789999999999999
Q ss_pred HHhCC
Q psy13354 299 LDQRG 303 (1342)
Q Consensus 299 L~~~g 303 (1342)
|++..
T Consensus 262 L~~hp 266 (380)
T d1ibja_ 262 LSSHP 266 (380)
T ss_dssp HHTCT
T ss_pred HHhCC
Confidence 99853
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.37 E-value=1.1e-11 Score=143.13 Aligned_cols=215 Identities=21% Similarity=0.217 Sum_probs=156.0
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++....||+ .++++-|.+.+++++ ||+.|+..++.+++.+||+|++....+++..... ..+...|+.+..+
T Consensus 57 ~nPT~~~le~----~la~LEg~~~a~~~s-SGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~-- 129 (394)
T d1e5ea_ 57 GNPTVSNLEG----KIAFLEKTEACVATS-SGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFI-- 129 (394)
T ss_dssp CCHHHHHHHH----HHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEE--
T ss_pred CCHHHHHHHH----HHHHHhCCcceeeec-cchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeecc--
Confidence 5676777777 999999999999999 9999999999999999999999887776654433 3456667744444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEc-CCCCC-cccCHHHHHHHHHH-cCCEEEEEcccchhhhhcCCCCCCCCC-Cc
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAG-ASAYS-QYIDFERFYHIAKN-INSYFMVDMAHYAGLIAAGEYPNPVPF-AD 221 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~-~s~~~-~~~~l~~I~~la~~-~gi~LIvDea~~~g~~~~~~~~~~l~~-~D 221 (1342)
+.. |++.+++.+++.+ ++|++- ++|+. ...|++++++.+++ +|+++|+|...+.... ..|++. +|
T Consensus 130 d~~-----d~~~~~~~i~~~t-~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~-----~~Pl~~GaD 198 (394)
T d1e5ea_ 130 NTA-----IPGEVKKHMKPNT-KIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMI-----TNPVDFGVD 198 (394)
T ss_dssp CTT-----STTHHHHHCCTTE-EEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTT-----CCGGGGTCS
T ss_pred CCC-----CHHHHHHhhcccc-cEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCccc-----CCchhcCCC
Confidence 443 6778888887654 555554 44444 45599999887665 6899999998654333 456665 89
Q ss_pred EEEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 222 ivv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+++.|.+|+++|-. ||+++++++.....+........|...+|..+.+.. .-++ -+..+.++..+|+..+.+.
T Consensus 199 iVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~---rgl~-TL~lRm~r~~~nA~~lA~~ 274 (394)
T d1e5ea_ 199 VVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLIT---RGLS-TLNIRMKAESENAMKVAEY 274 (394)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHH---HHHT-THHHHHHHHHHHHHHHHHH
T ss_pred EEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHH---hhch-hHHHHHHHHHHHHHHHHHH
Confidence 99999999995532 299999988777665433333455555555554332 2222 5666789999999999999
Q ss_pred HHhCC
Q psy13354 299 LDQRG 303 (1342)
Q Consensus 299 L~~~g 303 (1342)
|++..
T Consensus 275 L~~hp 279 (394)
T d1e5ea_ 275 LKSHP 279 (394)
T ss_dssp HHTCT
T ss_pred HhhcC
Confidence 99864
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.36 E-value=2.5e-12 Score=151.18 Aligned_cols=265 Identities=13% Similarity=-0.010 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHhCC--C-CceEecCCHHHHHHHHHHHc--------cCCCCEEEEeeccCCccchhhHHhhhCCce
Q psy13354 71 IDLIEKIAINRLKKIFNA--E-AANVQPHSGSQANQAVFFSV--------LNPGDTIMGMSLQEGGHLTHGMMLNMSGKW 139 (1342)
Q Consensus 71 ~~~Le~~~~~~la~~~g~--~-~~vi~~~sGs~A~~~al~al--------~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~ 139 (1342)
..+|++++++.....-++ + .-+++++|+++++.+++.+| +.|||+|+++.+.++.+ .......+..
T Consensus 102 ~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y---~~~~~~~~~~ 178 (425)
T d2hoxa1 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVF---REQTKYFDKK 178 (425)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHH---HHHHHHSCBT
T ss_pred CHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccH---HHHHHHcCCC
Confidence 357888666655443332 2 33666646677999999998 57999999877655544 3333444432
Q ss_pred eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC
Q psy13354 140 FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP 218 (1342)
Q Consensus 140 ~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~ 218 (1342)
.. .|.+|.+.+++.+++ +++++++++|||| +... -+-.+++.+|+||+|....+.. .. ...
T Consensus 179 ~~--------~~~~D~~~~~~~~~~-~~~ii~l~sPnNPtG~l~------~~v~~~~~~I~DEaY~~~~f~~--~~-~~~ 240 (425)
T d2hoxa1 179 GY--------VWAGNAANYVNVSNP-EQYIEMVTSPNNPEGLLR------HAVIKGCKSIYDMVYYWPHYTP--IK-YKA 240 (425)
T ss_dssp TE--------EEEEEGGGGTTCSCG-GGEEEEEESSCTTTCCCC------CCSSTTCEEEEECTTCSTTTSC--CC-SCB
T ss_pred CC--------ccCCCHHHHHhhCCC-CceEEEEECCCCCCcchh------hhhhhCCEEEEeccccCccccc--hh-hhc
Confidence 21 233456666655544 4677777788888 3220 1223689999999984322211 00 111
Q ss_pred CCcEEEecCCccCCCCCe---eEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc----------cchHHHH
Q psy13354 219 FADFITSTTHKSLRGPRG---GFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL----------KPDFKIY 284 (1342)
Q Consensus 219 ~~Divv~S~sK~l~gp~G---G~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l----------~~~~~~~ 284 (1342)
..+++++|+||++ |.+| ||+++++ .+++.+... ......+++.+.+.++..++.... .+.++..
T Consensus 241 ~~~Ivl~S~SK~f-glaGlRiGw~i~~~~~i~~~~~~~-~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~ 318 (425)
T d2hoxa1 241 DEDILLFTMSKFT-GHSGSRFGWALIKDESVYNNLLNY-MTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFG 318 (425)
T ss_dssp CCSEEEEEHHHHT-SCGGGCCEEEEECCHHHHHHHHHH-HHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHH
T ss_pred CCeEEEEeCHHhc-cCcchheeeEEeCCHHHHHHHHHh-hccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 2479999999999 8888 9987765 555655543 222333455666766665554321 2345666
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEee--------------CCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCC
Q psy13354 285 QKQVVKNAKILSKILDQRGIRIVS--------------GGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDP 350 (1342)
Q Consensus 285 ~~~l~~~a~~l~~~L~~~g~~~~~--------------~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~ 350 (1342)
++.+.++++++.+.|.+.+..... .++...+.|+.+.... .+.+..+|+++||.+.++..++..
T Consensus 319 ~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~--~~~~~~lL~e~gI~v~pGs~FG~~ 396 (425)
T d2hoxa1 319 FKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE--DKDCYQTFQNGRINTQNGVGFEAS 396 (425)
T ss_dssp HHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG--GCSHHHHHHHTTEECEEGGGGTSC
T ss_pred HHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCCh--HHHHHHHHHhCCEEEEechhcCCC
Confidence 788888899999999886532211 1223346788775432 345677888899999998777542
Q ss_pred CCccccccccccccc
Q psy13354 351 EKPYFTSGIRLGSSA 365 (1342)
Q Consensus 351 ~~~~~~~~lRi~~~~ 365 (1342)
++++|+++..
T Consensus 397 -----~~yvRisl~~ 406 (425)
T d2hoxa1 397 -----SRYVRLSLIK 406 (425)
T ss_dssp -----TTEEEEECSS
T ss_pred -----CCEEEEEecC
Confidence 3579999765
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=2.3e-11 Score=132.53 Aligned_cols=209 Identities=20% Similarity=0.233 Sum_probs=151.4
Q ss_pred CccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCc
Q psy13354 389 NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFM 468 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 468 (1342)
.++.++|++..++.+.+.+......| .+|.||||+|||++++.+|+.+...... ......
T Consensus 16 ~ld~~igRd~Ei~~l~~iL~r~~k~n-~lLVG~~GvGKTalv~~la~ri~~~~vp-------------------~~l~~~ 75 (268)
T d1r6bx2 16 GIDPLIGREKELERAIQVLCRRRKNN-PLLVGESGVGKTAIAEGLAWRIVQGDVP-------------------EVMADC 75 (268)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCE-EEEECCTTSSHHHHHHHHHHHHHHTCSC-------------------GGGTTC
T ss_pred CCCcccChHHHHHHHHHHHhcCccCC-cEEECCCCCcHHHHHHHHHHHHHhCCcc-------------------cccccc
Confidence 55679999999999999998777655 6899999999999999999998742100 111123
Q ss_pred cEEEEccCC----CcCHH----HHHHHHHHHhhcCccCCceEEEeccCccCC---------HHHHHHHHHhhcCCCCcEE
Q psy13354 469 DYIEMDAAS----TRGIN----EMAQLLEQTIYAPINARYKIYVIDEVHMLT---------HHAFNAMLKTLEEPPKYIK 531 (1342)
Q Consensus 469 d~~~i~~~~----~~~~~----~i~~ii~~~~~~p~~~~~rvviIDE~~~L~---------~~~~~~Ll~~Le~p~~~~v 531 (1342)
.+++++.++ ..... .+..+++++. ..+.-|++|||+|.+- .+..+.|..+|... .+.
T Consensus 76 ~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~----~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg--~i~ 149 (268)
T d1r6bx2 76 TIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE----QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--KIR 149 (268)
T ss_dssp EEEECCCC---CCCCCSSCHHHHHHHHHHHHS----SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC--CCE
T ss_pred eeEEeeechHhccCccchhHHHHHHHHHHHhh----ccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCC--CCe
Confidence 466665432 12223 3455555553 2344588899999871 24567777788864 666
Q ss_pred EEEEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHH----hcCCCcchhHHHHHHHhc------CCcHHH
Q psy13354 532 FILATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILN----KENIKFETSALNLIATGA------QGSMRD 596 (1342)
Q Consensus 532 lIl~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~----~~g~~i~~~al~~La~~~------~g~lr~ 596 (1342)
+|.+|+..+ ...+++.+|+..+.+.+|+.++...+|..... .+++.++++++..+++.+ ..-+.+
T Consensus 150 vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~~~PdK 229 (268)
T d1r6bx2 150 VIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 229 (268)
T ss_dssp EEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EEEeCCHHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHhhccCCCCCcH
Confidence 788776432 44678999999999999999999999877543 478999999999988875 357899
Q ss_pred HHHHHHHHHhhcC--------CCCCHHHHHHHhcc
Q psy13354 597 ALSLTDQAINYSS--------EKITLNSMQEMLSI 623 (1342)
Q Consensus 597 a~~~L~kl~~~~~--------~~It~e~V~~~v~~ 623 (1342)
++.+||.+++... ..|+.+||++++..
T Consensus 230 AIdllDea~a~~~~~~~~~~~~~i~~~di~~~i~~ 264 (268)
T d1r6bx2 230 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 264 (268)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccCcccCCHHHHHHHHHH
Confidence 9999999876531 23888888877643
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.27 E-value=4.3e-11 Score=138.63 Aligned_cols=217 Identities=18% Similarity=0.138 Sum_probs=147.4
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++....||+ .++.+-|.+.+++++ ||+.|+..++.+++++||+|++....|++...... .+...|+.+ ..+
T Consensus 56 ~nPT~~~LE~----~la~LE~~~~a~~~~-SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~--~~~ 128 (421)
T d2ctza1 56 MNPTVDVLEK----RLAALEGGKAALATA-SGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEV--RFT 128 (421)
T ss_dssp BCHHHHHHHH----HHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEE--EEC
T ss_pred CCHHHHHHHH----HHHHHhCCCeEEEec-ChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccc--eec
Confidence 5666777777 999999999999999 99999999999999999999998877776555443 456667644 333
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.+ -..+..++.++ .+.++|++-.+.|| ...|+++|+++|+++|+++|+|...+..- ....|+. .+|+
T Consensus 129 d~~----~~~~~~~~~~~-~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP----~~~~Pl~~GaDi 199 (421)
T d2ctza1 129 SRE----ERPEEFLALTD-EKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGG----YLLRPLAWGAAL 199 (421)
T ss_dssp CTT----CCHHHHHHHCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGG----TSCCGGGGTCSE
T ss_pred ccc----cCcchhccccC-CCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccc----eeccccccCCcE
Confidence 432 13344454444 45677777666666 55599999999999999999999865211 1233555 4899
Q ss_pred EEecCCccCCCC---CeeEEEEechhH----------------------HHHhhc--------cCCccccCCcHHHHHHH
Q psy13354 223 ITSTTHKSLRGP---RGGFILMKKKYK----------------------KIINSA--------VFPGIQGGPLMHVIAAK 269 (1342)
Q Consensus 223 vv~S~sK~l~gp---~GG~iv~~~~l~----------------------~~l~~~--------~~~~~~~~~~~~~~~Aa 269 (1342)
++.|.+|.++|- .||+++.+++.. +.+... ......|...+|..+.+
T Consensus 200 VvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l 279 (421)
T d2ctza1 200 VTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWV 279 (421)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHH
T ss_pred EEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 999999999553 228888765321 111000 00001344444444432
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 270 AVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 270 a~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
.+.. + +-+.-+.++..+|+..+.+.|++..
T Consensus 280 --~~rg-l-~TL~lRm~~~~~nA~~vA~~L~~hp 309 (421)
T d2ctza1 280 --VLLG-M-ETLSLRAERHVENTLHLAHWLLEQP 309 (421)
T ss_dssp --HHHH-H-TTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred --HhcC-C-cchhhHHHHHHHHHHHHHhhhccCC
Confidence 2222 2 2466678999999999999999864
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.27 E-value=6.8e-12 Score=145.42 Aligned_cols=315 Identities=12% Similarity=0.047 Sum_probs=178.3
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCc-cC-CcchHHHHHHHHHHHHHHHhCCCC---ceEecCCHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY-YG-GCKFIDLIEKIAINRLKKIFNAEA---ANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~-~~-~~~~~~~Le~~~~~~la~~~g~~~---~vi~~~sGs~A~~ 103 (1342)
..++.+|+..+|+.|+++|...+.+.. +.+.+.. ++ ..+...++.+.+++.++++++.++ +++++++|+.++.
T Consensus 4 ~~~F~pGP~~vp~~V~eam~~~~~~~~--~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~e 81 (361)
T d2c0ra1 4 AYNFNAGPAALPLEVLERAQAEFVDYQ--HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFA 81 (361)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSST--TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHH
T ss_pred CcccCCCCcCCCHHHHHHHHHHHhhhc--ccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHH
Confidence 356788999999999999998775321 1111111 11 245567788889999999999973 3444544455777
Q ss_pred HHHHHccCCCCEEEEeeccCCccch-hhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccC
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLT-HGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYID 182 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s-~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~ 182 (1342)
+++..+..+|+.+++... +.+.. ........|..+.....+ ....++++.+++.+...+ ...+.+ ..+...+
T Consensus 82 a~~~~l~~~~~~~l~~~~--g~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~v~~--~tg~~~~ 154 (361)
T d2c0ra1 82 MIPMNFLKEGQTANYVMT--GSWASKALKEAKLIGDTHVAASSE--ASNYMTLPKLQEIQLQDN-AAYLHL--TSNETIE 154 (361)
T ss_dssp HHHHHHCCTTCEEEEEEC--SHHHHHHHHHHHHHSCEEEEEECG--GGTTCSCCCGGGCCCCTT-EEEEEE--ESEETTT
T ss_pred HHHhccccCCCceEEEee--chhhhhhhhhhhhcCceeeeeccc--cccccchhhhhhhcccCc-ceEEEE--eccccee
Confidence 777888899999886552 22222 233456667755555433 344456666666554432 222221 1223346
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEe-chhH------------HHH
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK-KKYK------------KII 249 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~-~~l~------------~~l 249 (1342)
+.+|.++|+++|+++++|+++++|... -..+..|+.+.|++|.++.+.|++++.. +.+. ...
T Consensus 155 ~~~i~~~~~~~~al~~vDavss~g~~~-----id~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (361)
T d2c0ra1 155 GAQFKAFPDTGSVPLIGDMSSDILSRP-----FDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTY 229 (361)
T ss_dssp TEECSSCCCCTTSCEEEECTTTTTSSC-----CCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHH
T ss_pred cceEEEeeccCCceEEEEeeccccccc-----cccccceeEEEecccccccccCcEEEEEhHHhhhCccccccccccccc
Confidence 778889999999999999999887651 1222357888889999954444444433 3211 111
Q ss_pred hhccCCccccCCcHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHHHHHHHhCC-c-EEeeCC--CCCeEEEEEccCCC
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFK-EVLKPDFKIYQKQVVKNAKILSKILDQRG-I-RIVSGG--TKSHIILVDLRNKK 324 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~-~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~-~~~~~~--~~~~~v~i~~~~~~ 324 (1342)
... .....++..+...++..+.. ............+....+..+........ . .....+ .....+.+.+++..
T Consensus 230 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~ 307 (361)
T d2c0ra1 230 VKN--NSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEE 307 (361)
T ss_dssp HHT--TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHH
T ss_pred ccc--ccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcc
Confidence 111 11112222323222222222 22222444455566666666666665532 2 222211 11235566666433
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+.+..+|+++||.+..++ .. -+.+|+|+...++
T Consensus 308 -~~~~~~~~L~~~GI~~~~G~----~~----~g~~RIs~~~~~~ 342 (361)
T d2c0ra1 308 -LEKEFVKASEQEGFVGLKGH----RS----VGGLRASIYNAVP 342 (361)
T ss_dssp -HHHHHHHHHHHTTEESCBCC----TT----TCSEEEECCTTSC
T ss_pred -cHHHHHHHHHHCCCEEecCC----Cc----CCeEEEEecCCCC
Confidence 34556677778899987642 11 1249999877654
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.23 E-value=8.3e-11 Score=124.99 Aligned_cols=184 Identities=13% Similarity=0.190 Sum_probs=124.6
Q ss_pred CCcccc-cc--chhhHHHHHHHHHcC-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 388 SNFNTL-IG--QNHISKSLINALDKK-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 388 ~~f~~l-vG--q~~~~~~L~~~l~~~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
.+|++. +| .+.+.+.+++.++.. ...+.++||||+|+|||++++++++++...+
T Consensus 7 ~tFdnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~---------------------- 64 (213)
T d1l8qa2 7 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG---------------------- 64 (213)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTT----------------------
T ss_pred CChhhccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCc----------------------
Confidence 389995 56 566667777776643 3334589999999999999999999986421
Q ss_pred cCCCccEEEEccCCCc--CHH-----HHHHHHHHHhhcCccCCceEEEeccCccCC--HHHHHHHHHhhcCC-CCcEEEE
Q psy13354 464 NGCFMDYIEMDAASTR--GIN-----EMAQLLEQTIYAPINARYKIYVIDEVHMLT--HHAFNAMLKTLEEP-PKYIKFI 533 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~--~~~-----~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--~~~~~~Ll~~Le~p-~~~~vlI 533 (1342)
..+..++..... ... ...+..+. .....+++|||+|.+. ......|..+++.- .....+|
T Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~ii 134 (213)
T d1l8qa2 65 ----YRVIYSSADDFAQAMVEHLKKGTINEFRNM------YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQII 134 (213)
T ss_dssp ----CCEEEEEHHHHHHHHHHHHHHTCHHHHHHH------HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ----cceEEechHHHHHHHHHHHHccchhhHHHH------HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEE
Confidence 123333322100 000 01111111 1234699999999884 34455566555431 1233466
Q ss_pred EEeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHH
Q psy13354 534 LATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAI 605 (1342)
Q Consensus 534 l~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~ 605 (1342)
++++.+. ...+.|.||+ .++..+ |+.++..++|++++...|+.++++++++|++++ .|+|++...|.++.
T Consensus 135 its~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~-~~~R~L~~~l~~l~ 211 (213)
T d1l8qa2 135 LASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIK 211 (213)
T ss_dssp EEESSCGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHH
T ss_pred EecCCcchhccccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CcHHHHHHHHHHhh
Confidence 7776543 3567888886 788885 678899999999999999999999999999997 58999998887764
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=7.6e-11 Score=135.74 Aligned_cols=319 Identities=10% Similarity=-0.052 Sum_probs=173.1
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC--ceEe-cCCHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA--ANVQ-PHSGSQANQAVF 106 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~--~vi~-~~sGs~A~~~al 106 (1342)
.++.+|+..+|+.|+++|.+.+.+....+.+--......+...++.+.+++.+++++++++ .+++ +++|+.++.+++
T Consensus 3 ~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~ 82 (360)
T d1bjna_ 3 FNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVP 82 (360)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhh
Confidence 4678899999999999999887533211111000011245556777889999999999873 4454 434444666666
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHH
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFER 185 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~ 185 (1342)
..+..+++.+++......+ ..........+...... ....+...+.+.++..+...+..+.+.+.++.+ ...+.+.
T Consensus 83 ~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~ 159 (360)
T d1bjna_ 83 LNILGDKTTADYVDAGYWA-ASAIKEAKKYCTPNVFD--AKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDE 159 (360)
T ss_dssp HHHCTTCCEEEEEESSHHH-HHHHHHHTTTSEEEEEE--CEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEECCC
T ss_pred hcccccccccceecccchh-hhhHHHHhhcCccceee--ccccCCCcchhhhhhhhccCCceeEEEecccccccCccccc
Confidence 6777888888765522211 11233344445433333 322233334444444444433333333333322 3334444
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhH------------HHHhhc
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYK------------KIINSA 252 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~------------~~l~~~ 252 (1342)
+ .++.+++.+++|.+++++... -.....|+.+.|.+|++++|.| |+++..+... ......
T Consensus 160 i--~~~~~~~~v~vDa~~~~~~~~-----vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (360)
T d1bjna_ 160 T--PDFGADVVVAADFSSTILSRP-----IDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDN 232 (360)
T ss_dssp C--CCCCTTCCEEEECTTTTTSSC-----CCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHHHHT
T ss_pred e--ecccccceeeeeeecccccee-----eeeccceeEEEEcccccccCCCceeEeeehhhhhccccCCcchhhHHHHhh
Confidence 4 356778999999988776551 1122369999999999977766 5555544211 111111
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC---CeEEEEEccCCCCCHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK---SHIILVDLRNKKITGKI 329 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~---~~~v~i~~~~~~~~~~~ 329 (1342)
......++......+..+..............++..+.+..+...+...+......... ...+.+.+++.. ..+.
T Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~-~~~~ 310 (360)
T d1bjna_ 233 -GSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSA-LDKL 310 (360)
T ss_dssp -TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGG-GHHH
T ss_pred -hhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCcc-cHHH
Confidence 11112222222333333333333333455556666666666666666665544332111 235567776543 4455
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+..+++++||.+..+ +.. -+.+|+|+...+|
T Consensus 311 ~~~~l~~~Gi~~~~G----~~~----~g~~Ris~~~~~t 341 (360)
T d1bjna_ 311 FLEESFAAGLHALKG----HRV----VGGMRASIYNAMP 341 (360)
T ss_dssp HHHHHHHTTEECCBC----CTT----TCSEEEECCTTSC
T ss_pred HHHHHHHCCCEeecC----CCc----cCeEEEEecCCCC
Confidence 556667779988643 111 1348999877655
|
| >d1jr3d1 a.80.1.1 (D:212-338) delta subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: delta subunit species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=2.4e-11 Score=118.42 Aligned_cols=109 Identities=13% Similarity=0.052 Sum_probs=96.5
Q ss_pred HHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccc----------CCchhHHHHHHHHh
Q psy13354 628 YLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILI----------KDSPNYNEIIQLSK 697 (1342)
Q Consensus 628 ~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~----------~~~~~~~~~~~~a~ 697 (1342)
++|+|+|++..+|..+|+.++++|..+|++|+.+++.|.++||.++.++... ++. ..+...+.+.++++
T Consensus 2 ~~F~L~dai~~gd~~~a~~il~~l~~~g~~~~~il~~l~~~~~~l~~i~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (127)
T d1jr3d1 2 TPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQS-AHTPLRALFDKHRVWQNRRGMMGEALN 80 (127)
T ss_dssp CHHHHHHHHTTSCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCS-SSSCHHHHHHHHTCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhh-ccCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999998642 222 23334555889999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhcc--CCChhHHHHHHHHHhHc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELEL--APDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~--~~~~~~~le~~ll~l~~ 737 (1342)
+||..+|.+++..+.++|..+|+ +.++|..+|.+++++|.
T Consensus 81 ~~s~~~l~~~l~~l~~~D~~~K~~~~~~~~~~le~l~l~lc~ 122 (127)
T d1jr3d1 81 RLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCH 122 (127)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999996 35899999999999994
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.15 E-value=2e-10 Score=132.31 Aligned_cols=210 Identities=17% Similarity=0.181 Sum_probs=146.8
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++....||+ +++++-|.+.+++|+ ||+.|+..+ .+++.+||+|++....+++..... ..+...|+.+..+
T Consensus 53 gnPT~~~lE~----~la~LE~~~~a~~~s-SGmaAi~~~-l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~-- 124 (393)
T d1n8pa_ 53 QNPNRENLER----AVAALENAQYGLAFS-SGSATTATI-LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFT-- 124 (393)
T ss_dssp CCHHHHHHHH----HHHHHTTCSEEEEES-CHHHHHHHH-HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEE--
T ss_pred CChHHHHHHH----HHHHHhCCceEEEec-CchhHHHhh-hhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEe--
Confidence 4666667777 999999999999999 999998755 466788999998877776654443 3345556644443
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHH----HcCCEEEEEcccchhhhhcCCCCCCCCC
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAK----NINSYFMVDMAHYAGLIAAGEYPNPVPF 219 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~----~~gi~LIvDea~~~g~~~~~~~~~~l~~ 219 (1342)
+ .+.+++++++++ +.++|++-.+.|| ...|+++|+++|+ ++|+++|||...+.... ..|++.
T Consensus 125 ~------~~~~~~~~~i~~-~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~-----~~Pl~~ 192 (393)
T d1n8pa_ 125 N------DLLNDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYI-----SNPLNF 192 (393)
T ss_dssp S------SHHHHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHH-----CCGGGG
T ss_pred e------cchHHHHHHhhh-hcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCccc-----CCchhh
Confidence 2 145678887765 4567777666666 5559999999999 67899999998765444 345664
Q ss_pred -CcEEEecCCccCCCC---CeeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q psy13354 220 -ADFITSTTHKSLRGP---RGGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKI 294 (1342)
Q Consensus 220 -~Divv~S~sK~l~gp---~GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~ 294 (1342)
+|+++.|.+|+++|- .||+++.++ ++.+.++... ...|....|..+.+ .+. .++ -+..+.++..+|+..
T Consensus 193 GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~--~~~G~~~~p~~a~l--l~r-gl~-Tl~lR~~~~~~nA~~ 266 (393)
T d1n8pa_ 193 GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ--NAIGAIPSPFDAWL--THR-GLK-TLHLRVRQAALSANK 266 (393)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH--HHHCCCCCHHHHHH--HHH-HHT-THHHHHHHHHHHHHH
T ss_pred CCCEEEEccccccCCCCccccceeeecchhHHHHHHHHH--hhcCCCCChHHHHH--HHh-CCc-chhhHHHHHHHHHHH
Confidence 899999999999553 338877665 4556665422 23344445544332 222 222 566678999999999
Q ss_pred HHHHHHhC
Q psy13354 295 LSKILDQR 302 (1342)
Q Consensus 295 l~~~L~~~ 302 (1342)
+.+.|+..
T Consensus 267 lA~~L~~~ 274 (393)
T d1n8pa_ 267 IAEFLAAD 274 (393)
T ss_dssp HHHHHTSC
T ss_pred HHHHHHhc
Confidence 99999753
|
| >d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: gamma subunit species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=3e-10 Score=110.26 Aligned_cols=119 Identities=30% Similarity=0.535 Sum_probs=106.4
Q ss_pred CcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCC-chhHHHHHHHHhcCCHH
Q psy13354 624 IDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKD-SPNYNEIIQLSKKFNIE 702 (1342)
Q Consensus 624 ~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~-~~~~~~~~~~a~~~s~~ 702 (1342)
.+.+.+|+|++++.++|...+++.++++.+.|.++..++..|+..+|+++.+|..++..... ....+++.++|++++.+
T Consensus 2 vD~~~~~~L~~~I~~~d~~~~L~~l~~i~~~G~d~~~~l~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~~a~~~~~~ 81 (126)
T d1jr3a1 2 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT 81 (126)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHHHHHSCHH
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHcCCHH
Confidence 35678999999999999999999999999999999999999999999999999876553322 33456788999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccc
Q psy13354 703 QIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLH 742 (1342)
Q Consensus 703 ~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~ 742 (1342)
.|.++|+.+.++..++|.+.+|+..+||.++||++++|..
T Consensus 82 ~L~~~~~il~~~~~~ik~s~~~r~~~Em~llrll~~~~~~ 121 (126)
T d1jr3a1 82 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 121 (126)
T ss_dssp HHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999998876553
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.11 E-value=5.2e-10 Score=121.45 Aligned_cols=173 Identities=16% Similarity=0.269 Sum_probs=107.7
Q ss_pred cccccchhhHHHHH-------HHHHcCC--CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhh
Q psy13354 391 NTLIGQNHISKSLI-------NALDKKR--LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVK 461 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~-------~~l~~~~--~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~ 461 (1342)
..++|+.+.++.+. +.++++. .+..+|||||||||||++|+++|++++.
T Consensus 9 ~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~---------------------- 66 (246)
T d1d2na_ 9 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF---------------------- 66 (246)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC----------------------
T ss_pred cCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhcccc----------------------
Confidence 45777544443332 2234333 3457999999999999999999999874
Q ss_pred hccCCCccEEEEccCCC---c----CHHHHHHHHHHHhhcCccCCceEEEeccCccC----------CHHHHHHHHHhhc
Q psy13354 462 IDNGCFMDYIEMDAAST---R----GINEMAQLLEQTIYAPINARYKIYVIDEVHML----------THHAFNAMLKTLE 524 (1342)
Q Consensus 462 ~~~~~~~d~~~i~~~~~---~----~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L----------~~~~~~~Ll~~Le 524 (1342)
.++.++.++. . ....++++++.+... .+.|++|||+|.+ .....+.|+..++
T Consensus 67 -------~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~ 135 (246)
T d1d2na_ 67 -------PFIKICSPDKMIGFSETAKCQAMKKIFDDAYKS----QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLK 135 (246)
T ss_dssp -------SEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTS----SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTT
T ss_pred -------cccccccccccccccccchhhhhhhhhhhhhhc----ccceeehhhhhhHhhhcccccchhHHHHHHHHHHhc
Confidence 3555554321 1 123466677666543 3569999999865 2334577888887
Q ss_pred CCCC---cEEEEEEeCCCCCChHH-HhccE-EEEEEcCCC-HHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCC-----c
Q psy13354 525 EPPK---YIKFILATTEPQKIPIT-VLSRC-IQFNLKKML-HHDIVNNLCYILNKENIKFETSALNLIATGAQG-----S 593 (1342)
Q Consensus 525 ~p~~---~~vlIl~t~~~~kl~~~-L~sR~-~~i~~~~l~-~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g-----~ 593 (1342)
.... .+++|.+||.++.+.+. +.+|+ ..+.++.++ .+++.+.+ ...+ .+++.....+++.+.| .
T Consensus 136 ~~~~~~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~P~~~~r~~il~~l----~~~~-~~~~~~~~~i~~~~~g~~~~~~ 210 (246)
T d1d2na_ 136 KAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEAL----ELLG-NFKDKERTTIAQQVKGKKVWIG 210 (246)
T ss_dssp CCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHH----HHHT-CSCHHHHHHHHHHHTTSEEEEC
T ss_pred CCCccccceeeeeccCChhhccchhhcCccceEEecCCchhHHHHHHHH----Hhcc-CCChHHHHHHHHHcCCCccchh
Confidence 6533 46777888888777654 66777 667775543 33444433 2222 3566667777776655 2
Q ss_pred HHHHHHHH
Q psy13354 594 MRDALSLT 601 (1342)
Q Consensus 594 lr~a~~~L 601 (1342)
++.++..+
T Consensus 211 ik~ll~~i 218 (246)
T d1d2na_ 211 IKKLLMLI 218 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45444443
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=99.09 E-value=4.1e-10 Score=128.92 Aligned_cols=186 Identities=23% Similarity=0.258 Sum_probs=123.2
Q ss_pred cccccchhhHHHHHHHHHc-----------------------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCC
Q psy13354 391 NTLIGQNHISKSLINALDK-----------------------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIG 441 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~-----------------------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~ 441 (1342)
..++||+++++.+..++.+ +..+..+||.||+|+|||.+|+.+|+.+..
T Consensus 17 ~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~-- 94 (364)
T d1um8a_ 17 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI-- 94 (364)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC--
T ss_pred CeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhccc--
Confidence 3489999999988877631 445667999999999999999999998752
Q ss_pred CCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcC--------HHHHHHHHHHHhhcCccCCceEEEeccCccC--
Q psy13354 442 IDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG--------INEMAQLLEQTIYAPINARYKIYVIDEVHML-- 511 (1342)
Q Consensus 442 ~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~--------~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L-- 511 (1342)
.++.++++.... ...+.+++......--...+.+|++||+++.
T Consensus 95 ---------------------------~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~ 147 (364)
T d1um8a_ 95 ---------------------------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR 147 (364)
T ss_dssp ---------------------------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--
T ss_pred ---------------------------ceeehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhcc
Confidence 244444432221 2346666655433323345679999999984
Q ss_pred ------------CHHHHHHHHHhhcCCC-------------CcEEEEEEeCC----------------------------
Q psy13354 512 ------------THHAFNAMLKTLEEPP-------------KYIKFILATTE---------------------------- 538 (1342)
Q Consensus 512 ------------~~~~~~~Ll~~Le~p~-------------~~~vlIl~t~~---------------------------- 538 (1342)
..+.++.|++.++... .+++++.+++-
T Consensus 148 ~s~~~~~~~d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~ 227 (364)
T d1um8a_ 148 LSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQ 227 (364)
T ss_dssp ------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCC
T ss_pred ccccccccccccchHHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccc
Confidence 3457899999998421 12222222211
Q ss_pred ---------------------CCCChHHHhccE-EEEEEcCCCHHHHHHHHHH-----------HHHhcCC--CcchhHH
Q psy13354 539 ---------------------PQKIPITVLSRC-IQFNLKKMLHHDIVNNLCY-----------ILNKENI--KFETSAL 583 (1342)
Q Consensus 539 ---------------------~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~-----------~~~~~g~--~i~~~al 583 (1342)
...+.|.+..|. .++.|.+++.+++.+++.. .++.+|+ .++++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~ 307 (364)
T d1um8a_ 228 EKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAI 307 (364)
T ss_dssp SSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHH
T ss_pred cccchhhhhhhhccccHHHHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHH
Confidence 001456788888 7899999999999998852 2344566 5789999
Q ss_pred HHHHHhc---CCcHHHHHHHHHHHH
Q psy13354 584 NLIATGA---QGSMRDALSLTDQAI 605 (1342)
Q Consensus 584 ~~La~~~---~g~lr~a~~~L~kl~ 605 (1342)
++|++.+ .--.|.+.+.+++.+
T Consensus 308 ~~la~~g~d~~~GAR~L~riie~~l 332 (364)
T d1um8a_ 308 KEIAQLALERKTGARGLRAIIEDFC 332 (364)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHH
T ss_pred HHHHHhccCCCCCchHHHHHHHHHH
Confidence 9999953 345555555665543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.08 E-value=9.7e-10 Score=119.31 Aligned_cols=203 Identities=20% Similarity=0.263 Sum_probs=138.5
Q ss_pred ccccchhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccE
Q psy13354 392 TLIGQNHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDY 470 (1342)
Q Consensus 392 ~lvGq~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~ 470 (1342)
+.||+...++.+.+.++. ......+|++||+||||+.+|+.+...... ....+
T Consensus 1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~--------------------------~~~~~ 54 (247)
T d1ny5a2 1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR--------------------------SKEPF 54 (247)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT--------------------------TTSCE
T ss_pred CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC--------------------------ccccc
Confidence 468988888888777754 333344899999999999999999875432 11245
Q ss_pred EEEccCCCcCHHHHHHHHHHHhhcCc------------cCCceEEEeccCccCCHHHHHHHHHhhcCC-----------C
Q psy13354 471 IEMDAASTRGINEMAQLLEQTIYAPI------------NARYKIYVIDEVHMLTHHAFNAMLKTLEEP-----------P 527 (1342)
Q Consensus 471 ~~i~~~~~~~~~~i~~ii~~~~~~p~------------~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p-----------~ 527 (1342)
+.+++...........+.... ...+ ..+.-.++|||++.|+...++.|++++++. .
T Consensus 55 ~~~~~~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~ 133 (247)
T d1ny5a2 55 VALNVASIPRDIFEAELFGYE-KGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIE 133 (247)
T ss_dssp EEEETTTSCHHHHHHHHHCBC-TTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred ccchhhhhhhcccHHHhcCcc-cCCcCCcccccCCHHHccCCCEEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCcee
Confidence 556554433222222222110 0000 112348999999999999999999999742 1
Q ss_pred CcEEEEEEeCCCC-------CChHHHhccE--EEEEEcCCC--HHHHHHHHHHHHH----hcCC---CcchhHHHHHHHh
Q psy13354 528 KYIKFILATTEPQ-------KIPITVLSRC--IQFNLKKML--HHDIVNNLCYILN----KENI---KFETSALNLIATG 589 (1342)
Q Consensus 528 ~~~vlIl~t~~~~-------kl~~~L~sR~--~~i~~~~l~--~~el~~~l~~~~~----~~g~---~i~~~al~~La~~ 589 (1342)
.++.+|++++.+- .+.+.|..|+ ..+.++|+. .+++..++...++ +.+. .+++++++.|..+
T Consensus 134 ~~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~ 213 (247)
T d1ny5a2 134 VNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY 213 (247)
T ss_dssp CCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS
T ss_pred cCeEEEEecCCCHHHHHHcCCCcHHHHhhcCeeeecCCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhC
Confidence 2456888887642 3455666665 678888885 3567655555444 4443 4889999999987
Q ss_pred c-CCcHHHHHHHHHHHHhhcCCC-CCHHHHHHHh
Q psy13354 590 A-QGSMRDALSLTDQAINYSSEK-ITLNSMQEML 621 (1342)
Q Consensus 590 ~-~g~lr~a~~~L~kl~~~~~~~-It~e~V~~~v 621 (1342)
. .||++.+.+.+++++..+.+. |+.+|+..++
T Consensus 214 ~WPGNl~EL~~~l~~a~~~~~~~~I~~~dl~~l~ 247 (247)
T d1ny5a2 214 PWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 247 (247)
T ss_dssp CCTTHHHHHHHHHHHHHHHCCSSEECHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeECHHHccccC
Confidence 5 899999999999999888655 9999988764
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.08 E-value=3.9e-10 Score=126.82 Aligned_cols=170 Identities=23% Similarity=0.360 Sum_probs=120.0
Q ss_pred cccccchhhHHHHHHHHHc--------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 391 NTLIGQNHISKSLINALDK--------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~--------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
..++||+++++.+.+++.. .+...++||+||+|+|||.+|+.+|+.+....
T Consensus 23 ~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~--------------------- 81 (315)
T d1qvra3 23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--------------------- 81 (315)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG---------------------
T ss_pred CeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCC---------------------
Confidence 4589999999999888742 12233789999999999999999999985211
Q ss_pred ccCCCccEEEEccCCCc----------------CHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC
Q psy13354 463 DNGCFMDYIEMDAASTR----------------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~~~~----------------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p 526 (1342)
..++.++++... |.+.-..+.+.+...| +.||++||+++...+.++.|++.+++.
T Consensus 82 -----~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~~p----~~Vvl~DEieK~~~~v~~~ll~~l~~g 152 (315)
T d1qvra3 82 -----EAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP----YSVILFDEIEKAHPDVFNILLQILDDG 152 (315)
T ss_dssp -----GGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCS----SEEEEESSGGGSCHHHHHHHHHHHTTT
T ss_pred -----cceEEEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHhCC----CcEEEEehHhhcCHHHHHHHHHHhccC
Confidence 123333332211 1111123344444444 459999999999999999999999863
Q ss_pred -----------CCcEEEEEEeCC--------------------------CCCChHHHhccE-EEEEEcCCCHHHHHHHHH
Q psy13354 527 -----------PKYIKFILATTE--------------------------PQKIPITVLSRC-IQFNLKKMLHHDIVNNLC 568 (1342)
Q Consensus 527 -----------~~~~vlIl~t~~--------------------------~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~ 568 (1342)
..++++|+++|- .+.+.+.+.+|+ .++.|.+++.+++.+++.
T Consensus 153 ~~~~~~gr~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~ 232 (315)
T d1qvra3 153 RLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE 232 (315)
T ss_dssp EECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHH
T ss_pred ceeCCCCcEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHH
Confidence 246778888773 134667899999 677899999999999887
Q ss_pred HHHHh-------cC--CCcchhHHHHHHHhc
Q psy13354 569 YILNK-------EN--IKFETSALNLIATGA 590 (1342)
Q Consensus 569 ~~~~~-------~g--~~i~~~al~~La~~~ 590 (1342)
..+.+ .+ +.++++++++|++.+
T Consensus 233 ~~l~~l~~rl~~~~i~l~i~~~~~~~L~~~~ 263 (315)
T d1qvra3 233 IQLSYLRARLAEKRISLELTEAAKDFLAERG 263 (315)
T ss_dssp HHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHhC
Confidence 55443 33 468899999999863
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=8.7e-10 Score=124.21 Aligned_cols=166 Identities=17% Similarity=0.286 Sum_probs=118.5
Q ss_pred cccccchhhHHHHHHHHHc--------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 391 NTLIGQNHISKSLINALDK--------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~--------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
..++||+++++.+..++.. .+....+||.||+|+|||.+|+.+|+.+..
T Consensus 22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~----------------------- 78 (315)
T d1r6bx3 22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI----------------------- 78 (315)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC-----------------------
T ss_pred CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccC-----------------------
Confidence 4589999999999888841 233347999999999999999999999862
Q ss_pred ccCCCccEEEEccC--------------CCcCH--HHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC
Q psy13354 463 DNGCFMDYIEMDAA--------------STRGI--NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~--------------~~~~~--~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p 526 (1342)
.++.+|++ ....+ +.-..+.+..... .+.|+++||+++...+.++.|++.+++.
T Consensus 79 ------~~i~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~~----~~~vvl~DeieKa~~~V~~~lLqild~G 148 (315)
T d1r6bx3 79 ------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH----PHAVLLLDEIEKAHPDVFNILLQVMDNG 148 (315)
T ss_dssp ------EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHC----SSEEEEEETGGGSCHHHHHHHHHHHHHS
T ss_pred ------CeeEeccccccchhhhhhhcccCCCccccccCChhhHHHHhC----ccchhhhcccccccchHhhhhHHhhccc
Confidence 12333222 11111 1111223333333 3569999999999999999999999752
Q ss_pred -----------CCcEEEEEEeCCCC-------------------------CChHHHhccE-EEEEEcCCCHHHHHHHHHH
Q psy13354 527 -----------PKYIKFILATTEPQ-------------------------KIPITVLSRC-IQFNLKKMLHHDIVNNLCY 569 (1342)
Q Consensus 527 -----------~~~~vlIl~t~~~~-------------------------kl~~~L~sR~-~~i~~~~l~~~el~~~l~~ 569 (1342)
-.++++|+++|--. .+.+.+..|+ .++.|.+++.+++.+++..
T Consensus 149 ~ltd~~Gr~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~ 228 (315)
T d1r6bx3 149 TLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDK 228 (315)
T ss_dssp EEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHH
T ss_pred eecCCCCCccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHH
Confidence 35788888887211 2456788898 7899999999999888766
Q ss_pred HHHh-------cC--CCcchhHHHHHHHh
Q psy13354 570 ILNK-------EN--IKFETSALNLIATG 589 (1342)
Q Consensus 570 ~~~~-------~g--~~i~~~al~~La~~ 589 (1342)
.+.+ .+ +.++++++++|++.
T Consensus 229 ~l~~~~~~l~~~~i~l~~~~~a~~~l~~~ 257 (315)
T d1r6bx3 229 FIVELQVQLDQKGVSLEVSQEARNWLAEK 257 (315)
T ss_dssp HHHHHHHHHHHTTEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHh
Confidence 5543 33 45889999999986
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.07 E-value=1.4e-10 Score=130.74 Aligned_cols=147 Identities=25% Similarity=0.306 Sum_probs=100.4
Q ss_pred cccchhhHHHHHHHHHc-------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 393 LIGQNHISKSLINALDK-------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 393 lvGq~~~~~~L~~~l~~-------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
++||+++++.+..++.+ +..+.++||+||||||||.+|+++|+.++.
T Consensus 16 ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~-------------------- 75 (309)
T d1ofha_ 16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------------------- 75 (309)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC--------------------
T ss_pred ccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhcccc--------------------
Confidence 79999999999887731 224567999999999999999999999862
Q ss_pred hhhccCCCccEEEEccCCCc--------CHHHHHHHHHHHhhcCc-cCCceEEEeccCccCCH------------HHHHH
Q psy13354 460 VKIDNGCFMDYIEMDAASTR--------GINEMAQLLEQTIYAPI-NARYKIYVIDEVHMLTH------------HAFNA 518 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~--------~~~~i~~ii~~~~~~p~-~~~~rvviIDE~~~L~~------------~~~~~ 518 (1342)
.++.++++... ....++.+...+..... ...+.||++||+|++.. ...+.
T Consensus 76 ---------~~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~ 146 (309)
T d1ofha_ 76 ---------PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRD 146 (309)
T ss_dssp ---------CEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHH
T ss_pred ---------chhcccccccccceeEeeeccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHH
Confidence 24555543221 11234444443322110 01245999999998842 24567
Q ss_pred HHHhhcCC----------CCcEEEEEE----eCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHH
Q psy13354 519 MLKTLEEP----------PKYIKFILA----TTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLC 568 (1342)
Q Consensus 519 Ll~~Le~p----------~~~~vlIl~----t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~ 568 (1342)
|+..++.. ..++++|++ .+.+..+.+.+..|+ ..+.|.+++..++.+++.
T Consensus 147 LL~~~dg~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~ 211 (309)
T d1ofha_ 147 LLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT 211 (309)
T ss_dssp HHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred hhHHhcCCEEecCCeEEEccceeEEeccchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHH
Confidence 88888742 223445554 245567888999998 789999999999988864
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=7.2e-09 Score=120.94 Aligned_cols=296 Identities=14% Similarity=0.104 Sum_probs=168.3
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc------
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL------ 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~------ 110 (1342)
.+-.|.+.+|+.+.+. .+. +... .+ ....... +.+.+.++.+.+.+ .+.+||++|+..+++...
T Consensus 56 Gh~~p~i~~Av~~q~~-~~~--~~~~-~~-~~~~~~~----~~~~~~~~~~~~~v-~~~~sGseA~e~Aik~ar~~~~~~ 125 (404)
T d2byla1 56 GHCHPKIVNALKSQVD-KLT--LTSR-AF-YNNVLGE----YEEYITKLFNYHKV-LPMNTGVEAGETACKLARKWGYTV 125 (404)
T ss_dssp CBTCHHHHHHHHHHHT-TCC--CCCT-TE-EESSHHH----HHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHh-hCC--Cccc-cc-ccchHHH----HHHhhhhccccccc-ccccCccccchhHHHHHHHHhhhc
Confidence 4567789999888874 332 1111 11 1222223 34477777777655 455599999999998652
Q ss_pred ---C-CCCEEEEeeccCCccchhhHH-----hhhCC---ceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC--C-
Q psy13354 111 ---N-PGDTIMGMSLQEGGHLTHGMM-----LNMSG---KWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA--S- 175 (1342)
Q Consensus 111 ---~-pGD~Vlv~~~~~~~~~s~~~~-----~~~~g---~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~--s- 175 (1342)
. ....++...-.+.+....... ....+ ....+..++.+ |++.+++.+.+.+.+.+++.+ +
T Consensus 126 ~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~l~~~~iAaviiEPi~g~ 200 (404)
T d2byla1 126 KGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQDPNVAAFMVEPIQGE 200 (404)
T ss_dssp TCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT-----CHHHHHHHHTSTTEEEEEECSSBTT
T ss_pred cccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc-----CHHHHHHhcCCCCeEEEEECCccCC
Confidence 1 223555433322222111100 00000 01112233444 889999998766666677744 1
Q ss_pred ---CCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC--CeeEEEEechhHH
Q psy13354 176 ---AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP--RGGFILMKKKYKK 247 (1342)
Q Consensus 176 ---~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp--~GG~iv~~~~l~~ 247 (1342)
..+....+++|.++|++||+++|+||++. |+...+.... .+. .+|+++.+ |.++|. +.|.+++++++++
T Consensus 201 ~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-GfgR~G~~~a~~~~gv~PDi~~~g--K~l~gG~~p~~av~~~~~i~~ 277 (404)
T d2byla1 201 AGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-GLARTGRWLAVDYENVRPDIVLLG--KALSGGLYPVSAVLCDDDIML 277 (404)
T ss_dssp TTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHT
T ss_pred CCCccCCHHHHHHHHHHHHhcCeEEEeecccc-ccccccccchhhhcCCCCCEEEEC--chhhCCCccceeeeechhhhh
Confidence 11133359999999999999999999984 3211222111 111 25988555 999543 3489999998887
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC---cEEeeCCCCCeEEEEEccC--
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG---IRIVSGGTKSHIILVDLRN-- 322 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g---~~~~~~~~~~~~v~i~~~~-- 322 (1342)
.+.......++++ +|..+|++.+.++.+.+ ++..++..+...++.+.|.++. +.-+. + .+.+..+.+.+
T Consensus 278 ~~~~~~~~~T~~g--npl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l~~l~~~~i~~vR-g-~Gl~~~i~~~~~~ 351 (404)
T d2byla1 278 TIKPGEHFSTYGG--NPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMKLPSDVVTAVR-G-KGLLNAIVIKETK 351 (404)
T ss_dssp TSCTTSSCCSSTT--CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHTSCTTTEEEEE-E-ETTEEEEEECCCS
T ss_pred ccCCCCCCcCCCc--CHHHHHHHHHHHHHHHh--cCchhhhhHhhHHHHHHHHhhccccceeee-e-cccEEEEEEecCC
Confidence 7766544444443 56777777777776642 2345667777888888887742 11111 1 12344444433
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
.....++..+++++ ||++.+. ....+|++.+-..
T Consensus 352 ~~~~~~~~~~l~~~-Gvl~~~~----------~~~~i~l~PpL~i 385 (404)
T d2byla1 352 DWDAWKVCLRLRDN-GLLAKPT----------HGDIIRFAPPLVI 385 (404)
T ss_dssp SCCHHHHHHHHHHT-TEECEEE----------ETTEEEECCCTTC
T ss_pred chhHHHHHHHHHhC-CeEEecC----------CCCEEEEECCcCC
Confidence 22344566666654 9998752 1235788755443
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.04 E-value=9.2e-09 Score=121.03 Aligned_cols=242 Identities=16% Similarity=0.050 Sum_probs=142.5
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--CCCC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL--NPGD 114 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~--~pGD 114 (1342)
.+-.|.+.+|+.+.+.. ... ..... .....+++.+.+..+..+.+.|++||++|++.+++... ....
T Consensus 67 Gh~hp~i~~ai~~~~~~-~~~------~~~~~----~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~ 135 (427)
T d2gsaa_ 67 GHAHPEVIEALKVAMEK-GTS------FGAPC----ALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRD 135 (427)
T ss_dssp CBTCHHHHHHHHHHHTT-CSC------CSSCC----HHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred cCCcHHHHHHHHHHHHh-cCc------cccch----hHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCC
Confidence 34578899999888742 211 11112 23344556777776665666777799999999998662 3445
Q ss_pred EEEEeeccCCccchhhH-----HhhhCCc----------eeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCC
Q psy13354 115 TIMGMSLQEGGHLTHGM-----MLNMSGK----------WFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAY 177 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~-----~~~~~g~----------~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~ 177 (1342)
+|+.....+.+...... .....+. .......+. -|++.+++.+.+. +.+.+++.+ ..
T Consensus 136 ~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~le~~~~~~~~~iaavi~Ep-i~ 209 (427)
T d2gsaa_ 136 KIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-----NDLEAVKALFAENPGEIAGVILEP-IV 209 (427)
T ss_dssp EEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT-----TCHHHHHHHHTTSTTTEEEEEECS-SB
T ss_pred eEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCc-----chHHHHHHHHHhCCCCeEEEEEcC-Cc
Confidence 67765444433221110 0001111 001222222 2899999999864 334566643 22
Q ss_pred C-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC-CeeEEEEechhH
Q psy13354 178 S-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP-RGGFILMKKKYK 246 (1342)
Q Consensus 178 ~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~ 246 (1342)
. ....+++|.++|++||+++|+||++. |+ ..+.... .++ .+|+++.+ |.++|. ..|+++++++++
T Consensus 210 g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~t-G~-r~g~~~~~~~~gi~PDi~~~g--K~lggG~p~~a~~~~~~i~ 285 (427)
T d2gsaa_ 210 GNSGFIVPDAGFLEGLREITLEHDALLVFDEVMT-GF-RIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGKREIM 285 (427)
T ss_dssp CSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT-TTBTTCHHHHTTCCCSEEEEC--GGGGTTSCCEEEEECHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHHhceeeeeccccc-cc-eecccchHHhcCCCHHHHhhh--hccCCCcceeeeeehHHHH
Confidence 1 22249999999999999999999985 33 2222111 011 25998777 888442 227788899888
Q ss_pred HHHhhccC-CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Q psy13354 247 KIINSAVF-PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ 301 (1342)
Q Consensus 247 ~~l~~~~~-~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~ 301 (1342)
+.+..... .+..+...+|..++++.+.++.+.+. +..+++.++.+++.+.|++
T Consensus 286 ~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~--~l~~~~~~~g~~l~~~L~~ 339 (427)
T d2gsaa_ 286 QLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQP--GTYEYLDQITKRLSDGLLA 339 (427)
T ss_dssp TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTST--THHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhh--hHHhhhhHHHHHHHHHHHH
Confidence 87764221 12222244677777777777776422 2456677777777776654
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.03 E-value=3.2e-10 Score=130.71 Aligned_cols=319 Identities=11% Similarity=0.009 Sum_probs=161.0
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHH-H
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQ-A 104 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~-~ 104 (1342)
..++.+|+..+|++|++++.+.+.+ |.....+.... ...+...++.+.+++.++++++++ ..++++++++++++ +
T Consensus 4 ~~nF~pGP~~~p~~V~~a~~~~~~~-~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~ 82 (360)
T d1w23a_ 4 VFNFNAGPSALPKPALERAQKELLN-FNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTM 82 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSS-STTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred eeEeCCCCcCCCHHHHHHHHHHHHh-hcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHH
Confidence 3457889999999999999887743 21111100000 124455677788999999999987 35666645555444 4
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHH
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFE 184 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~ 184 (1342)
+...+..+++.+++....+ .....+......+........+..... +++.++..... ..+..+ .+..+...|++
T Consensus 83 ~~~~~~~~~~~v~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~-~~~tg~~~~~~ 156 (360)
T d1w23a_ 83 LPMNLLTKGTIGNYVLTGS-WSEKALKEAKLLGETHIAASTKANSYQ--SIPDFSEFQLN--ENDAYL-HITSNNTIYGT 156 (360)
T ss_dssp HHHHHCCTTCEEEEEECSH-HHHHHHHHHHTTSEEEEEEECGGGTSC--SCCCGGGCCCC--TTEEEE-EEESEETTTTE
T ss_pred HHhhhcccCcccceeeccc-hhhhhHHHHHHhhhcceeecccccccc--chhhhhhcccc--ccccee-EecCCccccce
Confidence 5555677888888654221 112233344555554434333322222 23333322221 222222 22233455888
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHH----------hhcc
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKII----------NSAV 253 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l----------~~~~ 253 (1342)
+|.++|+++|+++++|+++++|...- .++..|+.+.+++|.++++.| |+++.++...+.. ....
T Consensus 157 ~i~~~~~~~g~l~ivDavqs~g~~~i-----d~~~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (360)
T d1w23a_ 157 QYQNFPEINHAPLIADMSSDILSRPL-----KVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIK 231 (360)
T ss_dssp ECSSCCCCCSSCEEEECTTTTTSSCC-----CGGGCSEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTCCGGGCHHHHHH
T ss_pred eeeeccccceeeEEeecccccccccc-----ccccccceEEeeccccccCCcceeeEechhhhcccccCCcchhhhhhhh
Confidence 99999999999999999999887611 122234444444444433444 5555443211000 0001
Q ss_pred CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCC-C-CCeEEEEEccCCCCCHH
Q psy13354 254 FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQR--GIRIVSGG-T-KSHIILVDLRNKKITGK 328 (1342)
Q Consensus 254 ~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~-~-~~~~v~i~~~~~~~~~~ 328 (1342)
......++..+...+...+....... ......++....+.......... .......+ . ....+.+.+++...+ +
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~~~-~ 310 (360)
T d1w23a_ 232 SDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELN-Q 310 (360)
T ss_dssp TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHH-H
T ss_pred hhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCCccH-H
Confidence 11122333344433333333333222 22333344444444444444432 22222211 1 122566777654333 3
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+...+.++||.+..+. .. -+++|+|+-..++
T Consensus 311 ~~~~~l~~~GI~~~~G~----~~----~ggiRiS~~~~~t 342 (360)
T d1w23a_ 311 QFLAKAKEQGFVGLNGH----RS----VGGCRASIYNAVP 342 (360)
T ss_dssp HHHHHHHHTTEESCBCC----TT----TCSEEEECCTTSC
T ss_pred HHHHHHHHCCCeeeeCC----Cc----cCcEEEEeeCCCC
Confidence 44456667799986431 11 1359998755544
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.03 E-value=1.6e-08 Score=118.01 Aligned_cols=293 Identities=16% Similarity=0.091 Sum_probs=155.8
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc-------
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL------- 110 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~------- 110 (1342)
+-.|.+.+|+.+.+. ... +... . ...... ..+.+.+..+.+.+.+.++. +|++|+..++....
T Consensus 55 h~~p~v~~Ai~~q~~-~~~--~~~~-~-~~~~~~----~~~~~~~~~~~~~~~v~~~~-sgs~a~~~a~k~ar~~~~~~~ 124 (404)
T d1z7da1 55 HCHPNILNAMINQAK-NLT--ICSR-A-FFSVPL----GICERYLTNLLGYDKVLMMN-TGAEANETAYKLCRKWGYEVK 124 (404)
T ss_dssp BTCHHHHHHHHHHHT-TCS--CCCT-T-SEEHHH----HHHHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHHHHHHHTS
T ss_pred cCcHHHHHHHHHHHH-hCC--Cccc-c-cchHHH----HHHHHhhhhccccceeeeec-cccchHHHHHHHHHHHHhhcc
Confidence 457889999888874 222 1111 1 112222 23445777787877655555 99999998887542
Q ss_pred --C-CCCEEEEeeccCCccchhhHHh-hhCCc-------eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 111 --N-PGDTIMGMSLQEGGHLTHGMML-NMSGK-------WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 111 --~-pGD~Vlv~~~~~~~~~s~~~~~-~~~g~-------~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
. ....++.....+.+........ ..... .......+.+ +.+.++..+.+.+.+.|++-| ..+
T Consensus 125 ~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~iAavi~EP-i~g~ 198 (404)
T d1z7da1 125 KIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKDPNVCAFIVEP-IQGE 198 (404)
T ss_dssp CCCTTCCEEEEETTC--------------------------CEEEECTT-----CHHHHHHHHTSTTEEEEEECS-SBST
T ss_pred cccccccccccccccCCCCcccccccccccccccCCCCCCccccccccc-----hHHHHHHHhcCCCEEEEEEEE-EcCC
Confidence 1 1224443222111111111000 00000 0011112222 667777777666667777744 222
Q ss_pred ------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC--CCeeEEEEechhHH
Q psy13354 179 ------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG--PRGGFILMKKKYKK 247 (1342)
Q Consensus 179 ------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g--p~GG~iv~~~~l~~ 247 (1342)
....+++|.++|++||+++|+||++. |+...+.... .++ .+|+++.+ |.+++ .+.|++++++++++
T Consensus 199 ~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~t-GfgRtG~~~~~e~~gv~PDivt~g--K~l~gG~~p~~~v~~~~~i~~ 275 (404)
T d1z7da1 199 AGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVILLG--KALSGGHYPISAVLANDDIML 275 (404)
T ss_dssp TTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHT
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEEcCcc-CCCcccccccccccCCCCCEEEEc--ccccCCCCCcccccchHHHHc
Confidence 22348999999999999999999995 3322222111 111 26988655 99954 34599999999888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH----HHhCCcEEeeCCCCCeEEEEEccCC
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI----LDQRGIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~----L~~~g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
.+.......++++ +|..++++.+.++...+. ...++..+...++.+. +.+.++.....+ .+.+..+.+...
T Consensus 276 ~~~~~~~~~T~~g--npl~~aaa~a~L~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg-~Gl~~~i~~~~~ 350 (404)
T d1z7da1 276 VIKPGEHGSTYGG--NPLAASICVEALNVLINE--KLCENAEKLGGPFLENLKRELKDSKIVRDVRG-KGLLCAIEFKNE 350 (404)
T ss_dssp TCCTTCCCCTTTT--CHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-ETTEEEEEECTT
T ss_pred cCCCCCcCcCCCC--Ccchhhhhhhhhhhhhcc--hhhhhhccchhHHHHHHHHHHhcCCCeEEEEe-eCcEEEEEEcCC
Confidence 7776544444443 566676666766654211 2234444444444444 444443211111 233555666554
Q ss_pred CCC-HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 324 KIT-GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 324 ~~~-~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
... .++..++++ +||++.+.. ...+|+..+-
T Consensus 351 ~~~~~~~~~~l~~-~Gl~~~~~~----------~~~ir~~Ppl 382 (404)
T d1z7da1 351 LVNVLDICLKLKE-NGLITRDVH----------DKTIRLTPPL 382 (404)
T ss_dssp TCCHHHHHHHHHH-TTEECCEET----------TTEEEECCCT
T ss_pred cccHHHHHHHHHh-CCeEEecCC----------CCEEEEECCc
Confidence 433 345555655 599986531 2357876543
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.02 E-value=2.1e-09 Score=122.55 Aligned_cols=235 Identities=16% Similarity=0.184 Sum_probs=127.9
Q ss_pred CC-CccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccC
Q psy13354 387 PS-NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNG 465 (1342)
Q Consensus 387 p~-~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 465 (1342)
|. .|.+++||+.++..|.-++..... |++||+|+||+|||++|+.++..|-.-........+..++..|..+......
T Consensus 2 ~~~~f~~I~Gq~~~kral~laa~~~~~-h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (333)
T d1g8pa_ 2 PVFPFSAIVGQEDMKLALLLTAVDPGI-GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLST 80 (333)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGG-CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCC
T ss_pred CCCChhhccCcHHHHHHHHHHHhccCC-CeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccccccchhhcccc
Confidence 44 699999999999876655442211 4589999999999999999998762100000000011111111111111110
Q ss_pred C---C-ccEEEEccCCCcCHH------HHHHHHHHHhhcCc-----cCCceEEEeccCccCCHHHHHHHHHhhcCC----
Q psy13354 466 C---F-MDYIEMDAASTRGIN------EMAQLLEQTIYAPI-----NARYKIYVIDEVHMLTHHAFNAMLKTLEEP---- 526 (1342)
Q Consensus 466 ~---~-~d~~~i~~~~~~~~~------~i~~ii~~~~~~p~-----~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p---- 526 (1342)
. . ..+...... ...+ ++......-...+. .+...|+++||++.++.+.+++|++.||+.
T Consensus 81 ~~~~~~~~~~~~~~~--~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~v~i 158 (333)
T d1g8pa_ 81 NVIRKPTPVVDLPLG--VSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVV 158 (333)
T ss_dssp CEEEECCCEEEECTT--CCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred CcccccCceeeccCC--CCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHHHHHHHHhhhhcCCeEEe
Confidence 0 0 011221111 1111 12222221111111 123569999999999999999999999853
Q ss_pred ---------CCcEEEEEEeCCC-CCChHHHhccE-EEEEEcCCCHHH-HHHHHHHH------------------------
Q psy13354 527 ---------PKYIKFILATTEP-QKIPITVLSRC-IQFNLKKMLHHD-IVNNLCYI------------------------ 570 (1342)
Q Consensus 527 ---------~~~~vlIl~t~~~-~kl~~~L~sR~-~~i~~~~l~~~e-l~~~l~~~------------------------ 570 (1342)
|..+.+|.++|-. .++.+++.+|+ ..+.+..+.+.+ ....+...
T Consensus 159 ~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (333)
T d1g8pa_ 159 ERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQ 238 (333)
T ss_dssp CCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred cccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcchhhHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHH
Confidence 3445555555543 37889999999 567776664322 11111110
Q ss_pred -----HHhcCCCcchhHHHHHHHh---cCC-cHHHHHHHHHHHHhh----cCCCCCHHHHHHHhccC
Q psy13354 571 -----LNKENIKFETSALNLIATG---AQG-SMRDALSLTDQAINY----SSEKITLNSMQEMLSII 624 (1342)
Q Consensus 571 -----~~~~g~~i~~~al~~La~~---~~g-~lr~a~~~L~kl~~~----~~~~It~e~V~~~v~~~ 624 (1342)
..-..+.++++....++.. .+. ++|....++.-+-.. ....|+.+||.+++...
T Consensus 239 ~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~S~R~~~~llrvArtiA~L~gr~~V~~~di~~a~~lv 305 (333)
T d1g8pa_ 239 ILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 305 (333)
T ss_dssp HHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHhhcccceecCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 0112355666666655543 233 788877776533222 23459999999866433
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=98.97 E-value=9.2e-09 Score=119.29 Aligned_cols=294 Identities=14% Similarity=0.090 Sum_probs=166.6
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc--cCCCC
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV--LNPGD 114 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al--~~pGD 114 (1342)
+-.|.+.+|+.+.+.+.. ..+ . .+ .. +.+..+.+.+....... +.+.+++||++|++.+++.. .....
T Consensus 53 h~hp~v~~a~~~~~~~~~--~~~-~-~~-~~----~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~ 123 (387)
T d1vefa1 53 HGNPEVVEAVKRQAETLM--AMP-Q-TL-PT----PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRK 123 (387)
T ss_dssp BTCHHHHHHHHHHHHHCC--CCC-T-TS-CC----HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCcHHHHHHHHHHHHhhc--ccc-c-cc-CC----chHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccc
Confidence 345889999998886422 111 1 11 11 23333444555555444 45666779999999999876 23345
Q ss_pred EEEEeeccCCccchhhHHh--------hhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC--CC---C-Ccc
Q psy13354 115 TIMGMSLQEGGHLTHGMML--------NMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA--SA---Y-SQY 180 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~~~--------~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~--s~---~-~~~ 180 (1342)
.|++....+.++......+ ........+..+|.+ |++.+++.+.+ ..+.|++.| ++ . +..
T Consensus 124 ~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~~~~-~iAavi~EPi~g~~G~~~~~~ 197 (387)
T d1vefa1 124 KFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN-----DVEALKRAVDE-ETAAVILEPVQGEGGVRPATP 197 (387)
T ss_dssp EEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT-----CHHHHHHHCCT-TEEEEEECSEETTTTSEECCH
T ss_pred eecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC-----CHHHHHHhcCC-CeEEEEEECCCCCCCCccCCH
Confidence 6776554443332211110 011111122334444 78899888764 456666643 11 1 133
Q ss_pred cCHHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCcc
Q psy13354 181 IDFERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 181 ~~l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~~ 257 (1342)
..+++|.++|++||+++|+||++. +|-.+.......++ .+|+++.+ |.++|..- +.+++.++.++.+.......+
T Consensus 198 ~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~g--K~l~gG~~~~~~~~~~~~~~~~~~~~~g~T 275 (387)
T d1vefa1 198 EFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLA--KALGGGVPLGVAVMREEVARSMPKGGHGTT 275 (387)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHHTSCTTSSCCS
T ss_pred HHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeec--ccCCCCccccccccceeeeeccccCCcccc
Confidence 359999999999999999999985 33322111000111 26988776 99854322 777788777777655544444
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC---cEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG---IRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g---~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
+++ +|..++++.+.++.+.+ .+..++..+..+++.+.|++.. +.-+. ..+.+..+.+.+.. ......++
T Consensus 276 ~~g--nPla~aaa~a~L~~l~~--~~~~~~v~~~g~~l~~~L~~l~~~~v~~vr--g~Gl~~~ie~~~~~--~~~~~~~~ 347 (387)
T d1vefa1 276 FGG--NPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKLRAIPSPKIREVR--GMGLMVGLELKEKA--APYIARLE 347 (387)
T ss_dssp STT--CHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHTSCCTTEEEEE--EETTEEEEEESSCS--HHHHHHHH
T ss_pred CCC--Ccchhhhcccchhhccc--ccccchHhhhhHHHHHHHHhcCCCceEEEe--ecceEEEEEEeCCc--hHHHHHHH
Confidence 433 56777777777776631 3456777888889999998742 11111 11234556665443 34444554
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
.++|+.+.+. +...+|+..+-.
T Consensus 348 ~~~g~l~~~~----------g~~~ir~~Ppl~ 369 (387)
T d1vefa1 348 KEHRVLALQA----------GPTVIRFLPPLV 369 (387)
T ss_dssp HHHCEECEES----------STTEEEECCCTT
T ss_pred HHCCCeEEec----------CCCEEEEECCcc
Confidence 4558876542 123578775443
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=3.3e-08 Score=116.25 Aligned_cols=307 Identities=12% Similarity=0.033 Sum_probs=161.9
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc--cCC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV--LNP 112 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al--~~p 112 (1342)
.+-.|.+.+|+.+.+. .+..... . .... +....+.+++.+++..+ +.+++++||++|++.+++.. ...
T Consensus 55 Gh~~p~i~~ai~~q~~-~~~~~~~--~-~~~~----~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~ 126 (425)
T d1sffa_ 55 GHLHPKVVAAVEAQLK-KLSHTCF--Q-VLAY----EPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATK 126 (425)
T ss_dssp CBTCHHHHHHHHHHTT-TCSCCCT--T-TEEC----HHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred cCCcHHHHHHHHHHHh-hcCCccc--c-cccC----cHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhc
Confidence 3456889999888774 2321111 1 1111 23344566888887543 45666779999999998876 223
Q ss_pred CCEEEEeeccCCccchhhHHhhh-----------CCceeEEEEecCCCCCCCCH---HHHHHHHH----hcCCeEEEEcC
Q psy13354 113 GDTIMGMSLQEGGHLTHGMMLNM-----------SGKWFNSICYGLNKKEKIDY---KKVEYLAK----KNKPKLIIAGA 174 (1342)
Q Consensus 113 GD~Vlv~~~~~~~~~s~~~~~~~-----------~g~~~~~v~~~~~~~~~id~---e~Le~~i~----~~~~~liv~~~ 174 (1342)
..+|+.....+.++......+.- ........+.+......... +..++... ....+.+++.|
T Consensus 127 r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EP 206 (425)
T d1sffa_ 127 RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEP 206 (425)
T ss_dssp CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECS
T ss_pred ccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecC
Confidence 45677655444443322221110 00111122222211111111 11112211 12345566643
Q ss_pred --CC----CCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCCCe-eEEEEech
Q psy13354 175 --SA----YSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGPRG-GFILMKKK 244 (1342)
Q Consensus 175 --s~----~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~ 244 (1342)
++ .+....++.|.++|++||+++|+||++. |+...+... ..++ .+|+++.+ |.++|... |+++++++
T Consensus 207 i~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t-G~gR~g~~~a~~~~gv~PDi~~~g--K~l~gG~P~~av~~~~~ 283 (425)
T d1sffa_ 207 VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLTTFA--KSIAGGFPLAGVTGRAE 283 (425)
T ss_dssp BCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEEEEC--GGGGTSSCCEEEEEEHH
T ss_pred ccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccc-cCCCcchhhHHHhcCCCccceecc--cccCCCcceEEEEEcHH
Confidence 11 1233469999999999999999999986 322122111 1111 26988765 99954322 88999999
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcEEeeCCCCCeEEEEEc
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~~~~~~~~~~~v~i~~ 320 (1342)
+++.+......+++++ +|..++++.+.++.+.+ .+..++..+..+++.+.|.+ .++.....+. +.+..+.+
T Consensus 284 i~~~~~~~~~~~T~~g--npl~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~-Gl~~~i~f 358 (425)
T d1sffa_ 284 VMDAVAPGGLGGTYAG--NPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGL-GAMIAIEL 358 (425)
T ss_dssp HHTTSCTTSBCCSSSS--CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEE-TTEEEEEE
T ss_pred HHHhhCCCCCCCCCCc--CHHHHHHHHHHHHHHHH--hhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEcc-ccEEEEEE
Confidence 8888776555555544 56677777777776532 12345556666666665544 3432211112 22344444
Q ss_pred cCC----CC----CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 321 RNK----KI----TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 321 ~~~----~~----~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
... .. ...+..++++ +||++.+.... .+.+|++.+-.++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~g~~--------~n~i~~~PpL~it 405 (425)
T d1sffa_ 359 FEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY--------YNVLRILVPLTIE 405 (425)
T ss_dssp BGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT--------SCEEEECCCTTCC
T ss_pred eccCccCCccHHHHHHHHHHHHH-CCCEEeccCCC--------CCEEEEECCCCCC
Confidence 211 11 1345555665 49988764111 2357887654433
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=98.92 E-value=3.7e-09 Score=121.38 Aligned_cols=196 Identities=19% Similarity=0.218 Sum_probs=133.6
Q ss_pred CCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCC
Q psy13354 388 SNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF 467 (1342)
Q Consensus 388 ~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 467 (1342)
-.++-++|++..++.+.+.+......+ .+|.||||+|||+++..+|+.+..... | .....
T Consensus 19 g~ld~~~gr~~ei~~~~~~L~r~~k~n-~llvG~~GvGKtaiv~~la~~i~~~~v---------p----------~~l~~ 78 (387)
T d1qvra2 19 GKLDPVIGRDEEIRRVIQILLRRTKNN-PVLIGEPGVGKTAIVEGLAQRIVKGDV---------P----------EGLKG 78 (387)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCC-CEEEECTTSCHHHHHHHHHHHHHHTCS---------C----------TTSTT
T ss_pred CCCCCCcCcHHHHHHHHHHHhcCCCCC-CeEECCCCCCHHHHHHHHHHHHHhCCC---------C----------HHHcC
Confidence 456779999999999999998777666 477799999999999999998864210 0 00111
Q ss_pred ccEEEEccCCC----cC----HHHHHHHHHHHhhcCccCCceEEEeccCccCC--------HHHHHHHHHhhcCCCCcEE
Q psy13354 468 MDYIEMDAAST----RG----INEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------HHAFNAMLKTLEEPPKYIK 531 (1342)
Q Consensus 468 ~d~~~i~~~~~----~~----~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------~~~~~~Ll~~Le~p~~~~v 531 (1342)
..++.++.+.. .. ...+..++.++... ...-|++|||+|.+- .++.+.|..+|..+ .+.
T Consensus 79 ~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~---~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg--~~~ 153 (387)
T d1qvra2 79 KRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQS---QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELR 153 (387)
T ss_dssp CEEEEECC-----------CHHHHHHHHHHHHHTT---CSSEEEEECCC-------------------HHHHHTT--CCC
T ss_pred ceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccC---CCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCC--Ccc
Confidence 24666665421 11 22345555554332 123478999999872 24568899999885 455
Q ss_pred EEEEeCCCC----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----cCCCcchhHHHHHHHhc------CCcHHHH
Q psy13354 532 FILATTEPQ----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----ENIKFETSALNLIATGA------QGSMRDA 597 (1342)
Q Consensus 532 lIl~t~~~~----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----~g~~i~~~al~~La~~~------~g~lr~a 597 (1342)
+|.+|+..+ .-.++|.+|++.+.+.+|+.++...+|...... +++.++++++...++.+ ..-+.++
T Consensus 154 ~I~~tT~~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKA 233 (387)
T d1qvra2 154 LIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKA 233 (387)
T ss_dssp EEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred eeeecCHHHHHHhcccHHHHHhcccccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhcccccccccChhhH
Confidence 677776321 225689999999999999999999998876654 69999999999999865 4689999
Q ss_pred HHHHHHHHhhc
Q psy13354 598 LSLTDQAINYS 608 (1342)
Q Consensus 598 ~~~L~kl~~~~ 608 (1342)
+.+||.+++..
T Consensus 234 idlld~a~a~~ 244 (387)
T d1qvra2 234 IDLIDEAAARL 244 (387)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987664
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=1.9e-07 Score=109.34 Aligned_cols=313 Identities=13% Similarity=-0.019 Sum_probs=169.9
Q ss_pred CceeeeecC-----CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHH
Q psy13354 28 NNIELIASE-----NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~-----n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A 101 (1342)
+.|.+.++. .+-.|.+.+|+.+.+. ....... .. + .+....+ +.+++.+..+.. +.+.+.+||++|
T Consensus 44 ~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~-~~~~~~~-~~-~----~~~~~~~-l~~~l~~~~~~~~~~v~f~~sGseA 115 (429)
T d1s0aa_ 44 RLVDGMSSWWAAIHGYNHPQLNAAMKSQID-AMSHVMF-GG-I----THAPAIE-LCRKLVAMTPQPLECVFLADSGSVA 115 (429)
T ss_dssp EEEESSTTTTTCTTCBSCHHHHHHHHHHHH-HCSCCCC-SS-E----ECHHHHH-HHHHHHHHSCTTCCEEEEESSHHHH
T ss_pred EEEECcccHHHHhhcCCcHHHHHHHHHHHH-hcCCccc-CC-c----cchHHHH-HHHHHHhhhccCcceeeeccccccc
Confidence 445554442 4466789999998875 3321111 11 1 1112222 344666666544 455666699999
Q ss_pred HHHHHHHcc-------CCCCEEEEeeccCCccchhhHHhh-----------hCCceeEEEEecCC-CCC---CCCHHHHH
Q psy13354 102 NQAVFFSVL-------NPGDTIMGMSLQEGGHLTHGMMLN-----------MSGKWFNSICYGLN-KKE---KIDYKKVE 159 (1342)
Q Consensus 102 ~~~al~al~-------~pGD~Vlv~~~~~~~~~s~~~~~~-----------~~g~~~~~v~~~~~-~~~---~id~e~Le 159 (1342)
+..++.... .+..+|+...-.+.+......... .........+.+.. ... .-+++.++
T Consensus 116 ~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (429)
T d1s0aa_ 116 VEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFA 195 (429)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHH
T ss_pred hhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhh
Confidence 999987652 233567765444333221111100 00011111211111 111 12455555
Q ss_pred HHHHhc--CCeEEEEcCC--CCC-----cccCHHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCCCCC-CCcEEEecCC
Q psy13354 160 YLAKKN--KPKLIIAGAS--AYS-----QYIDFERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPNPVP-FADFITSTTH 228 (1342)
Q Consensus 160 ~~i~~~--~~~liv~~~s--~~~-----~~~~l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~~l~-~~Divv~S~s 228 (1342)
+.+... ..+.+++.|- +.+ ....+++|.++|++||+++|+||++. +|-.+........+ .+|+++.+
T Consensus 196 ~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~g-- 273 (429)
T d1s0aa_ 196 RLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLG-- 273 (429)
T ss_dssp HHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--
T ss_pred hhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecccccccc--
Confidence 554433 4456666542 111 33369999999999999999999986 22221111011111 26998776
Q ss_pred ccCCCC--CeeEEEEechhHHHHhhccC---CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-
Q psy13354 229 KSLRGP--RGGFILMKKKYKKIINSAVF---PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR- 302 (1342)
Q Consensus 229 K~l~gp--~GG~iv~~~~l~~~l~~~~~---~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~- 302 (1342)
|.+++. +.|++++++++++.+..... .+..+...+|..++++.+.++.+.. ++..++..+..+++.+.|.++
T Consensus 274 K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~L~~l~ 351 (429)
T d1s0aa_ 274 KALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES--GDWQQQVADIEVQLREQLAPAR 351 (429)
T ss_dssp GGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHGGGG
T ss_pred cccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhcccccccc--ccccchhhHHHHHHHHHHHHhc
Confidence 998432 33889999999888765321 1112222356777777777777632 235677788888899888764
Q ss_pred --C-cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 303 --G-IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 303 --g-~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
. +.-+. ..+.+..+.+..+.....+...+++ +||++.+. ...+|++..-.
T Consensus 352 ~~~~v~~vr--g~Gl~~~~e~~~~~~~~~~~~~~~~-~Gl~~~~~-----------g~~i~~~Ppl~ 404 (429)
T d1s0aa_ 352 DAEMVADVR--VLGAIGVVETTHPVNMAALQKFFVE-QGVWIRPF-----------GKLIYLMPPYI 404 (429)
T ss_dssp GCTTEEEEE--EETTEEEEEESSCBCHHHHHHHHHH-TTEECCCB-----------TTEEEECCCTT
T ss_pred cCCceEEEe--ecccEEEEEecCcccHHHHHHHHHH-CCcEEEec-----------CCEEEEeCCcC
Confidence 1 21111 1234555677665545555555555 59998643 13578764443
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.87 E-value=2.6e-09 Score=116.34 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=56.8
Q ss_pred HHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHH
Q psy13354 813 IRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKR 891 (1342)
Q Consensus 813 ~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~ 891 (1342)
+.+.+++ .|++|+.+ +|++|..+++++.+|++.+|+.+.||.||+||| |.++|.+|++| .++.
T Consensus 116 L~~~~~~-~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtG---------g~S~p~~Gs~g------~g~~ 179 (251)
T d2i0za1 116 LLTRLKD-LGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVG---------GKSVPQTGSTG------DGYA 179 (251)
T ss_dssp HHHHHHH-TTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCC---------CSSSGGGSCSS------HHHH
T ss_pred HHHHHHH-cCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccC---------CccccccCCCc------ccch
Confidence 3344443 58999766 799999999999999999999999999999999 99999888765 4455
Q ss_pred HHH-cCCCc
Q psy13354 892 LKE-LQLSH 899 (1342)
Q Consensus 892 l~~-~g~~~ 899 (1342)
+++ +|+++
T Consensus 180 ~a~~~~~~~ 188 (251)
T d2i0za1 180 WAEKAGHTI 188 (251)
T ss_dssp HHHHTTCCE
T ss_pred hcccceeee
Confidence 544 67754
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.86 E-value=3.9e-07 Score=105.58 Aligned_cols=328 Identities=12% Similarity=0.049 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHhcc----CceeeeecCCCCcHHHHHHHhHH--HHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC
Q psy13354 14 KIWEIILKEKQRQN----NNIELIASENYTSLAVMEAQGTL--LTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN 87 (1342)
Q Consensus 14 ~~~~~~~~~~~~~~----~~i~l~a~~n~l~~~v~eal~~~--l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g 87 (1342)
.+..-+....++.. ..+.+.+..-++|+.+ +.+... +...|. |... ....+..++.-....++++++|
T Consensus 49 e~~r~~~~ls~kN~~~~~~fig~G~~~~~~p~~i-~~~~~~~~~~t~yt---Pyqp--E~sQG~Lq~l~e~q~~l~eltG 122 (437)
T d1wyua1 49 KVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVV-QALAARGEFLTAYT---PYQP--EVSQGVLQATFEYQTMIAELAG 122 (437)
T ss_dssp HHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHH-HHHHTSHHHHHCCS---CCSG--GGCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCcCccccCcccCCceeCHHH-HHHHhChhhhhhCC---Ccch--HHHHHHHHHHHHHHHHHHHhhC
Confidence 45555554444432 2355555556777655 444432 222221 1111 1246666777778889999999
Q ss_pred CCCceEecCCHHHHHHHHHHHc--cCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh
Q psy13354 88 AEAANVQPHSGSQANQAVFFSV--LNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK 164 (1342)
Q Consensus 88 ~~~~vi~~~sGs~A~~~al~al--~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~ 164 (1342)
.+.+.+.+..|++|...++... ....+.+++....++....... .+...|. +++.++.++.+. +.++ +.+
T Consensus 123 md~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~--~vv~v~~~~~~~-~~~~----~~~ 195 (437)
T d1wyua1 123 LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGA--KLLTLPLEGGRT-PLPE----VGE 195 (437)
T ss_dssp SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTC--EEEEECCBTTBC-CCCC----CCT
T ss_pred CCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhccccee--eEEeeecccccc-hhhh----hcc
Confidence 9977777778888666555443 2356678876665554433322 2344565 555556553332 2222 223
Q ss_pred cCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCC------CCCe
Q psy13354 165 NKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLR------GPRG 236 (1342)
Q Consensus 165 ~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~------gp~G 236 (1342)
..+.+++.+||+. ...++++|++++|+.|+++++|..-.. +..-. .|-+ .+||++++ +|.|+ ||.+
T Consensus 196 -~~Aavmi~~Pnt~G~~ed~~~i~~~~h~~G~l~~~~ad~~a--l~~l~--~Pg~~GaDi~~g~-~q~fg~p~g~GGP~~ 269 (437)
T d1wyua1 196 -EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLS--LGVLK--PPGAYGADIAVGD-GQSLGLPMGFGGPHF 269 (437)
T ss_dssp -TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTG--GGTBC--CHHHHTCSEEEEE-CTTTTCCCGGGCSCC
T ss_pred -ceeEEEEccccccccccchHHHHHHhhhccceEEeeechhh--hhccc--cccccccceEeec-cceeccccCCCcCcc
Confidence 3444555555555 445899999999999998887764321 11111 1112 37999998 66653 3334
Q ss_pred eEEEEechhHHHHhhcc----------------------------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHH
Q psy13354 237 GFILMKKKYKKIINSAV----------------------------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288 (1342)
Q Consensus 237 G~iv~~~~l~~~l~~~~----------------------------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l 288 (1342)
|++.+++++...+-... ...+..+........++.-+..+..+++++..++.
T Consensus 270 G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a 349 (437)
T d1wyua1 270 GFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKS 349 (437)
T ss_dssp EEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHH
Confidence 99999987755442110 11111122222222333333444556899999999
Q ss_pred HHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 289 VKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 289 ~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
..+++++.+.|.+. |+....+..-.+-+.+.++. ...++...+++ +||.......|... .+.+.++++..+
T Consensus 350 ~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~~--~~~~i~k~L~d-~G~~~~~~~~~~~~-----~~~lli~~TE~~ 421 (437)
T d1wyua1 350 VEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPK--DPEAVRRALAE-RGFHGATPVPREYG-----ENLALFAATELH 421 (437)
T ss_dssp HHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSS--CHHHHHHHHHH-TTCCCCEECCTTSC-----SSEEEEECCTTC
T ss_pred HHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECCC--CHHHHHHHHHh-CCCCCCcccccCCC-----CCeEEEecCCCC
Confidence 99999999999985 77765432233445555543 23456666655 59987654444332 245778776665
Q ss_pred c
Q psy13354 368 T 368 (1342)
Q Consensus 368 t 368 (1342)
+
T Consensus 422 t 422 (437)
T d1wyua1 422 E 422 (437)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=98.80 E-value=2.8e-07 Score=108.27 Aligned_cols=310 Identities=12% Similarity=0.014 Sum_probs=156.4
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc--cCCC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV--LNPG 113 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al--~~pG 113 (1342)
.+-.|.+.+|+.+.+. .+. +....+. .. . ...+.+++.+..... +.+.+++|||+|++.+++.. ....
T Consensus 56 Gh~~p~v~~ai~~q~~-~~~--~~~~~~~--~~---~-~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r 126 (431)
T d1zoda1 56 GHCHPEIVSVIGEYAG-KLD--HLFSEML--SR---P-VVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGK 126 (431)
T ss_dssp CBTCHHHHHHHHHHHH-HCC--CCCTTCC--CH---H-HHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHh-hcc--ccccccc--cH---H-HHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCC
Confidence 4566889999999885 332 1111111 12 1 223555777776432 44566669999999999875 2344
Q ss_pred CEEEEeeccCCccchhhHHhhh---------CCceeEEEEecCCCC-------CCCCH---HHHHHHHHh---cCCeEEE
Q psy13354 114 DTIMGMSLQEGGHLTHGMMLNM---------SGKWFNSICYGLNKK-------EKIDY---KKVEYLAKK---NKPKLII 171 (1342)
Q Consensus 114 D~Vlv~~~~~~~~~s~~~~~~~---------~g~~~~~v~~~~~~~-------~~id~---e~Le~~i~~---~~~~liv 171 (1342)
+.|+.....+.+.......... ...+...++.+.... ...+. +.+...+.. .+.+.++
T Consensus 127 ~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi 206 (431)
T d1zoda1 127 YEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFI 206 (431)
T ss_dssp CEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred cceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhcccccccee
Confidence 6676654444333222111110 011112222221100 00122 333333322 2345566
Q ss_pred EcC--CC----CCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC-CCcEEEecCCccCCCC-CeeEEEE
Q psy13354 172 AGA--SA----YSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP-FADFITSTTHKSLRGP-RGGFILM 241 (1342)
Q Consensus 172 ~~~--s~----~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~-~~Divv~S~sK~l~gp-~GG~iv~ 241 (1342)
+.| ++ .+....+++|.++|++||+++|.||++. |+.-.+..... .. .+|+++.+ |.++|. .-|.+++
T Consensus 207 ~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~t-G~gRtG~~~~~~~~gv~PDi~~~g--K~l~gG~p~~av~~ 283 (431)
T d1zoda1 207 AEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-GVGRTGTMFACQRDGVTPDILTLS--KTLGAGLPLAAIVT 283 (431)
T ss_dssp ECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTSSCEEEEE
T ss_pred eccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccc-cccccccccccccCCCCcchhccc--cccccccccceeee
Confidence 644 11 1133459999999999999999999986 32212221111 11 26988776 998442 2277777
Q ss_pred echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH----hCCcEEeeCCCCCeEEE
Q psy13354 242 KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD----QRGIRIVSGGTKSHIIL 317 (1342)
Q Consensus 242 ~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~----~~g~~~~~~~~~~~~v~ 317 (1342)
.++.++........+..+...+|..++++.+.++.+.+ +...++..+..+++.+.+. +.++.....+.+. +.-
T Consensus 284 ~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Gl-m~~ 360 (431)
T d1zoda1 284 SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR--DGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGL-LLG 360 (431)
T ss_dssp CHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETT-EEE
T ss_pred eecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhh--hhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecce-EEE
Confidence 77777766554333333333456666666666665421 1234444554555555443 3343322211222 332
Q ss_pred EEcc---C-----CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 318 VDLR---N-----KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 318 i~~~---~-----~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+. . ......+...+++ +|+.......+.. .+.+|++.+-..|
T Consensus 361 ie~~~~~~~~~~~~~~~~~i~~~~~~-~Gl~~~~~~~~~~------~~~i~l~Ppl~it 412 (431)
T d1zoda1 361 VEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLPGM------GGVFRIAPPLTVS 412 (431)
T ss_dssp EEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCTTS------CCEEEECCCTTCC
T ss_pred EEEecCCcccCccHHHHHHHHHHHHH-hCcccCeeeecCC------CCEEEEECCCCCC
Confidence 3321 1 1112345555655 5987654433332 2358887665444
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=5.1e-09 Score=107.51 Aligned_cols=158 Identities=19% Similarity=0.209 Sum_probs=111.1
Q ss_pred cCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhcc
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDN 464 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~ 464 (1342)
-+...++.++|++..++.+.+.+...+..| .+|.||||+|||++++.+|+.+...... ..
T Consensus 16 a~~g~ld~~igRd~Ei~~l~~iL~r~~k~n-~lLvG~pGVGKTalv~~LA~ri~~~~vp-------------------~~ 75 (195)
T d1jbka_ 16 AEQGKLDPVIGRDEEIRRTIQVLQRRTKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVP-------------------EG 75 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSSSSCE-EEEECCTTSCHHHHHHHHHHHHHHTCSC-------------------GG
T ss_pred HHcCCCCCCcCcHHHHHHHHHHHhccCCCC-eEEEecCCcccHHHHHHHHHHHHhCCCC-------------------HH
Confidence 334567789999999999999998877655 6999999999999999999998632100 11
Q ss_pred CCCccEEEEccC----CCcCHHHHHH----HHHHHhhcCccCCceEEEeccCccCCH--------HHHHHHHHhhcCCCC
Q psy13354 465 GCFMDYIEMDAA----STRGINEMAQ----LLEQTIYAPINARYKIYVIDEVHMLTH--------HAFNAMLKTLEEPPK 528 (1342)
Q Consensus 465 ~~~~d~~~i~~~----~~~~~~~i~~----ii~~~~~~p~~~~~rvviIDE~~~L~~--------~~~~~Ll~~Le~p~~ 528 (1342)
.....++++|.+ ......++.+ +++++.. ..+.-|++|||+|.+-. +..+.|..+|+..
T Consensus 76 L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~---~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg-- 150 (195)
T d1jbka_ 76 LKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-- 150 (195)
T ss_dssp GTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHH---STTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT--
T ss_pred HcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhc---CCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCC--
Confidence 112357777753 2333445544 4444422 12334889999998732 2358889999974
Q ss_pred cEEEEEEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHH
Q psy13354 529 YIKFILATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNL 567 (1342)
Q Consensus 529 ~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l 567 (1342)
.+.+|.+|+..+ .-.++|.+|++.+....|+.++...+|
T Consensus 151 ~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 151 ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp SCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCCCHHHHHHHh
Confidence 566787776432 446799999999999999999887654
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.70 E-value=1.3e-06 Score=102.51 Aligned_cols=317 Identities=12% Similarity=0.078 Sum_probs=181.1
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCC---cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHH-HHH
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG---CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAV-FFS 108 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~---~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~a-l~a 108 (1342)
.++..-..|.+.+.+.+.+ ..| . . |.+ ..+..+..-+....+++++|.+-+..-...|++|...+ +++
T Consensus 71 G~~~~hy~P~v~~~~~~~~-TaY----T--P-YQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma 142 (471)
T d1wyub1 71 GSCTMKYNPKLHEEAARLF-ADL----H--P-YQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILII 142 (471)
T ss_dssp TTTCCCCCCHHHHHHHHTT-SSC----C--T-TSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH
T ss_pred ccccCccCcchhhhHHHHH-hcc----C--C-CCCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHH
Confidence 3334446677777765422 122 2 1 221 45555555557779999999996666556666654433 333
Q ss_pred c---cCCCC----EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cc
Q psy13354 109 V---LNPGD----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QY 180 (1342)
Q Consensus 109 l---~~pGD----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~ 180 (1342)
. -..|. .++.....+. ..........+. ..+.++.+..+..+.+.+.....+. ...+++..+++. ..
T Consensus 143 ~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~a~v~v~~p~~~g~~ 217 (471)
T d1wyub1 143 RAYHEDRGEGRTRRVVLVPDSAH--GSNPATASMAGY--QVREIPSGPEGEVDLEALKRELGPH-VAALMLTNPNTLGLF 217 (471)
T ss_dssp HHHHHHTTCTTTCCEEEEETTSC--THHHHHHHHTTC--EEEEECBCTTSSBCHHHHHHHCSTT-EEEEEECSSCTTSCC
T ss_pred HHHhhhcccccccccccCCcccc--cceeeeeecccc--eeecccccccccccchhhhhhhhcc-ccceeeccCCCcccc
Confidence 2 11221 2232222222 112222233333 5555566667778998888776553 344455455555 33
Q ss_pred c-CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCC-----Ce-eEEEEechhHHHHhhcc
Q psy13354 181 I-DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP-----RG-GFILMKKKYKKIINSAV 253 (1342)
Q Consensus 181 ~-~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp-----~G-G~iv~~~~l~~~l~~~~ 253 (1342)
. ..+++++++++.|..+++|.+...... +....+-...|+++.+.++.|+.| +| |++.++++++..+--..
T Consensus 218 e~~~~~~~~~~h~~g~~~~~~~~~~~~~~--~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRi 295 (471)
T d1wyub1 218 ERRILEISRLCKEAGVQLYYDGANLNAIM--GWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPL 295 (471)
T ss_dssp CTTHHHHHHHHHHHTCEEEEEGGGGGGTT--TTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCE
T ss_pred cchhhhhHHHHHhccccccccccchhhhh--hccccCcccccccccccccccccccccccccccceeehhhhhccCCCce
Confidence 3 689999999999999999987543222 111111113588878888877322 22 89999998776553110
Q ss_pred --------------CCc---cccCCcH-HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeE
Q psy13354 254 --------------FPG---IQGGPLM-HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHI 315 (1342)
Q Consensus 254 --------------~~~---~~~~~~~-~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~ 315 (1342)
..+ ...++++ ....+++..+..+..++++++.+....++.|+.+.|+..|+++....+..+-
T Consensus 296 V~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~~~ff~E 375 (471)
T d1wyub1 296 VERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHE 375 (471)
T ss_dssp EEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSC
T ss_pred ecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcCceeccCcceeeE
Confidence 000 0012222 2222223333444566899999999999999999998889887553333344
Q ss_pred EEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 316 ILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 316 v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+.+.++......++.+.+++. |+......+|... .+.+-++++..+|++
T Consensus 376 Fvv~~~~~~~~~~i~k~L~~~-G~~~~~~~~p~~~-----~~~llv~vTE~~tke 424 (471)
T d1wyub1 376 FVAQPPEGFRALDLAKGLLEL-GFHPPTVYFPLIV-----KEALMVEPTETEAKE 424 (471)
T ss_dssp EEEBCSTTCCHHHHHHHHHHT-TCCCCEESCSTTS-----TTCEEECCCTTSCHH
T ss_pred EeecCCCCCCHHHHHHHHHHc-CCCCCcccCcCCC-----CCeEEEecCCCCCHH
Confidence 455555433344566777764 8876555555442 245788888877753
|
| >d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=3.1e-08 Score=97.49 Aligned_cols=127 Identities=11% Similarity=0.066 Sum_probs=98.7
Q ss_pred HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcC
Q psy13354 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG 480 (1342)
Q Consensus 401 ~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~ 480 (1342)
+.|.+.+++| ++++|||||++-+.+..+...+-+.+..++. .+...+ ....
T Consensus 7 ~~L~~~l~k~-l~~vyll~G~E~~L~~~~~~~i~~~~~~~~~-------------------------~~~~~~---~~~~ 57 (140)
T d1jqlb_ 7 EQLRAQLNEG-LRAAYLLLGNDPLLLQESQDAVRQVAAAQGF-------------------------EEHHTF---SIDP 57 (140)
T ss_dssp GGHHHHHHHC-CCSEEEEESSCHHHHHHHHHHHHHHHHHTTC-------------------------CEEECC---CCST
T ss_pred HHHHHHHhcC-CCcEEEEEcChHHHHHHHHHHHHHHHHhCCc-------------------------ceeeee---cccc
Confidence 4577778766 8999999999999999999999888763210 111111 1112
Q ss_pred HHHHHHHHHHHhhcCccCCceEEEeccCcc-CCHHHHHHHHHhhcCCCCcEEEEEEeCCCC------CChHHHhccEEEE
Q psy13354 481 INEMAQLLEQTIYAPINARYKIYVIDEVHM-LTHHAFNAMLKTLEEPPKYIKFILATTEPQ------KIPITVLSRCIQF 553 (1342)
Q Consensus 481 ~~~i~~ii~~~~~~p~~~~~rvviIDE~~~-L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~------kl~~~L~sR~~~i 553 (1342)
..++.++++.+.+.|+|+++|+|+|++++. .+++..+.|.+|+++|++++++|+.++..+ ++.+++.+++.++
T Consensus 58 ~~~~~~l~~~~~t~slF~~krli~i~~~~~~~~k~~~~~L~~~~~~~~~~~~lii~~~~~~k~~~~~k~~K~l~k~g~vI 137 (140)
T d1jqlb_ 58 NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQV 137 (140)
T ss_dssp TCCHHHHHHHHHCCCTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEE
T ss_pred cCCHHHHHHHHcCCCcccCcEEEEEEcCCCCCcHHHHHHHHHHHhCCCCCEEEEEEcCCCCchhhhhHHHHHHHhCCeEE
Confidence 246899999999999999999999999874 456777899999999999999999987654 3457888888888
Q ss_pred EEc
Q psy13354 554 NLK 556 (1342)
Q Consensus 554 ~~~ 556 (1342)
+|+
T Consensus 138 ~Cq 140 (140)
T d1jqlb_ 138 TCQ 140 (140)
T ss_dssp ECC
T ss_pred eCC
Confidence 763
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.60 E-value=3.3e-07 Score=108.43 Aligned_cols=151 Identities=15% Similarity=0.077 Sum_probs=85.5
Q ss_pred cCHHHHHHHHHHcCCEEEEEcccc-hhhhh---cCCCCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCc
Q psy13354 181 IDFERFYHIAKNINSYFMVDMAHY-AGLIA---AGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 181 ~~l~~I~~la~~~gi~LIvDea~~-~g~~~---~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~ 256 (1342)
..+++|.++|++||++||+||++. +|-.+ ...+.+....+|+++.+ |.++ ||+......+. .........
T Consensus 269 ~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~g--K~l~---~g~~~~~~~~~-~~~~~~~~~ 342 (461)
T d1ohwa_ 269 DFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMM---TGGFFHKEEFR-PNAPYRIFN 342 (461)
T ss_dssp HHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEEC--GGGS---SEEEEECGGGS-CSSTTSSCC
T ss_pred hHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhhhh--hccc---ccccccccccc-ccccccccc
Confidence 359999999999999999999985 33221 11222222236888665 9883 24444443321 111111222
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-----C-cEEeeCCCCCeEEEEEccCCCCCHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-----G-IRIVSGGTKSHIILVDLRNKKITGKIA 330 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-----g-~~~~~~~~~~~~v~i~~~~~~~~~~~~ 330 (1342)
+++ .+|..++++.+.++.+.+ ++..++..+..+++.+.|.++ . +.-+. ..+.++.+.+++.....++.
T Consensus 343 T~~--g~p~~~aaa~a~l~~i~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vr--G~Gl~~~ie~~~~~~~~~i~ 416 (461)
T d1ohwa_ 343 TWL--GDPSKNLLLAEVINIIKR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVR--GRGTFCSFDTPDESIRNKLI 416 (461)
T ss_dssp SCS--SCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEE--EETTEEEEECSSHHHHHHHH
T ss_pred ccc--cccccchhhcccchhhhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEee--eeeEEEEEEcCCHHHHHHHH
Confidence 222 355666666676666532 234566677777777777653 1 21111 12345667776554444666
Q ss_pred HHHHHHCCceeeec
Q psy13354 331 ESILESANIICNKN 344 (1342)
Q Consensus 331 ~~ll~~~GI~v~~~ 344 (1342)
..+++ +||++.+.
T Consensus 417 ~~~~~-~Gll~~~~ 429 (461)
T d1ohwa_ 417 SIARN-KGVMLGGC 429 (461)
T ss_dssp HHHHH-TTEECEEE
T ss_pred HHHHH-CCeEEeeC
Confidence 66666 49998764
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=98.46 E-value=2.4e-07 Score=105.32 Aligned_cols=171 Identities=15% Similarity=0.070 Sum_probs=94.5
Q ss_pred cccchhhHHH-HHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEE
Q psy13354 393 LIGQNHISKS-LINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYI 471 (1342)
Q Consensus 393 lvGq~~~~~~-L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~ 471 (1342)
+.+++..+.. +...+++-...+++|||||||||||++|+.+++.++. .++
T Consensus 133 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~-----------------------------~~i 183 (362)
T d1svma_ 133 LPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGG-----------------------------KAL 183 (362)
T ss_dssp STTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCC-----------------------------EEE
T ss_pred ccchHHHHHHHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcCC-----------------------------CEE
Confidence 4444544433 3333343344568999999999999999999999973 466
Q ss_pred EEccCCCcCHHHHHHHHHHHh-------hc--CccCCceEEEeccCccCCHHHHHHHHHhhcCCC--------C------
Q psy13354 472 EMDAASTRGINEMAQLLEQTI-------YA--PINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP--------K------ 528 (1342)
Q Consensus 472 ~i~~~~~~~~~~i~~ii~~~~-------~~--p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~--------~------ 528 (1342)
++|++...+...++...+... .. .....+.++++||+|.| ...++... .
T Consensus 184 ~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l--------~~~~dg~~~~~~~~~~~~~~~~~ 255 (362)
T d1svma_ 184 NVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNL--------RDYLDGSVKVNLEKKHLNKRTQI 255 (362)
T ss_dssp CCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTT--------HHHHHCSSCEEECCSSSCCEEEC
T ss_pred EEECcchhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEehHhhc--------ccccCCcchhhhhhhhhchhhhc
Confidence 666654332222211111100 00 00111234445555544 33222110 0
Q ss_pred cEEEEEEeCCCCCChHHHhccE--EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHH-HHhcCCcHHHHHHHH
Q psy13354 529 YIKFILATTEPQKIPITVLSRC--IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI-ATGAQGSMRDALSLT 601 (1342)
Q Consensus 529 ~~vlIl~t~~~~kl~~~L~sR~--~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~L-a~~~~g~lr~a~~~L 601 (1342)
...+|++||+.+.- .....|+ .++.+.++.......++..+++++.+.++.+.+..+ ...+++|++.+++++
T Consensus 256 ~~p~i~ttN~~~~~-~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~~D~~~~i~~~ 330 (362)
T d1svma_ 256 FPPGIVTMNEYSVP-KTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSR 330 (362)
T ss_dssp CCCEEEEECSCCCC-HHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGGGSCGGGHHH
T ss_pred cCCceeeccccccc-ccccccCceEEeecCCCcHHHHHHHHHHHhcccCCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 01267788865422 2233354 444444444455567788888899998888777554 456677888877765
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=98.29 E-value=3.3e-07 Score=101.50 Aligned_cols=121 Identities=15% Similarity=0.114 Sum_probs=76.4
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHH
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQL 487 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~i 487 (1342)
+++|||||||||||.+|+++|.+++... .++.++.+. ..+...++++
T Consensus 124 g~~l~~G~pG~GKT~la~ala~~~~~~~---------------------------~~~~~~~~~~~~~~~G~~e~~~~~~ 176 (321)
T d1w44a_ 124 GMVIVTGKGNSGKTPLVHALGEALGGKD---------------------------KYATVRFGEPLSGYNTDFNVFVDDI 176 (321)
T ss_dssp EEEEEECSSSSCHHHHHHHHHHHHHTTS---------------------------CCEEEEBSCSSTTCBCCHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHHhcCCC---------------------------CeEEEEhhHhhhcccchHHHHHHHH
Confidence 4467799999999999999999987321 234444432 1234568888
Q ss_pred HHHHhhcCccCCceEEEeccCccCCHH------------HHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHh------
Q psy13354 488 LEQTIYAPINARYKIYVIDEVHMLTHH------------AFNAMLKTLEE--PPKYIKFILATTEPQKIPITVL------ 547 (1342)
Q Consensus 488 i~~~~~~p~~~~~rvviIDE~~~L~~~------------~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~------ 547 (1342)
++.+.. ..||+|||+|.+... ..+.|+.-++. ....+++|.+|| +..++++|.
T Consensus 177 f~~a~~------~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN-~~~~~~~i~~~~~r~ 249 (321)
T d1w44a_ 177 ARAMLQ------HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKIVELVKEA 249 (321)
T ss_dssp HHHHHH------CSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CCCCCHHHHHHHHHH
T ss_pred HHHHhh------ccEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCC-Ccccccchhhhhhcc
Confidence 888754 249999999988421 34566666552 223465666665 555544443
Q ss_pred ccE-EEEEEcCCCHHHHHHHHH
Q psy13354 548 SRC-IQFNLKKMLHHDIVNNLC 568 (1342)
Q Consensus 548 sR~-~~i~~~~l~~~el~~~l~ 568 (1342)
.|+ ..+.+.+|+.++..++|.
T Consensus 250 ~Rf~~~v~v~~pd~~~r~~il~ 271 (321)
T d1w44a_ 250 SRSNSTSLVISTDVDGEWQVLT 271 (321)
T ss_dssp HHHSCSEEEEECSSTTEEEEEE
T ss_pred CcccceeecCCCChHHHHHHHH
Confidence 344 556667777666555543
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=98.25 E-value=1.9e-05 Score=91.70 Aligned_cols=124 Identities=20% Similarity=0.270 Sum_probs=81.8
Q ss_pred EEEeccCccCC------------HHHHHHHHHhhcCC----------CCcEEEEEEeCC----CCCChHHHhccE-EEEE
Q psy13354 502 IYVIDEVHMLT------------HHAFNAMLKTLEEP----------PKYIKFILATTE----PQKIPITVLSRC-IQFN 554 (1342)
Q Consensus 502 vviIDE~~~L~------------~~~~~~Ll~~Le~p----------~~~~vlIl~t~~----~~kl~~~L~sR~-~~i~ 554 (1342)
++++||++... ...+..|+..++.. ..+..+|....- +..+.|.+..|+ .++.
T Consensus 252 ~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEliGRlPi~v~ 331 (443)
T d1g41a_ 252 IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVE 331 (443)
T ss_dssp EEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEE
T ss_pred ccccchhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhccceEEEEE
Confidence 77888877542 12345666666542 233444443321 224678999998 8999
Q ss_pred EcCCCHHHHHHHHHH-----------HHHhcCCC--cchhHHHHHHHhc--------CCcHHHHHHHHHHHHhhc-----
Q psy13354 555 LKKMLHHDIVNNLCY-----------ILNKENIK--FETSALNLIATGA--------QGSMRDALSLTDQAINYS----- 608 (1342)
Q Consensus 555 ~~~l~~~el~~~l~~-----------~~~~~g~~--i~~~al~~La~~~--------~g~lr~a~~~L~kl~~~~----- 608 (1342)
|.+++.+++.++|.. .++.+|+. +++++++.+|+.+ +-..|.+.+.+++++.-.
T Consensus 332 L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i~E~~l~~~~f~~p 411 (443)
T d1g41a_ 332 LTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSAS 411 (443)
T ss_dssp CCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGG
T ss_pred ccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHHHHHHhccCC
Confidence 999999999998843 33346775 5899999998865 235688888888865421
Q ss_pred C--CC---CCHHHHHHHhccCc
Q psy13354 609 S--EK---ITLNSMQEMLSIID 625 (1342)
Q Consensus 609 ~--~~---It~e~V~~~v~~~~ 625 (1342)
+ .. |+.+.|++.+....
T Consensus 412 ~~~~~~v~Id~~~v~~~l~~~~ 433 (443)
T d1g41a_ 412 DMNGQTVNIDAAYVADALGEVV 433 (443)
T ss_dssp GCTTCEEEECHHHHHHHHTTTT
T ss_pred CCCCCEEEECHHHHHhhhhchh
Confidence 1 11 88888887775443
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.20 E-value=6e-06 Score=89.92 Aligned_cols=196 Identities=18% Similarity=0.086 Sum_probs=113.3
Q ss_pred CccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccC---
Q psy13354 389 NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNG--- 465 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~--- 465 (1342)
.-++++|++..++.|.+. ..++++++||+|+|||++++.+++.+.+.. .+..|..+......
T Consensus 10 ~~~~f~GR~~el~~l~~~-----~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~----------~~i~~~~~~~~~~~~~~ 74 (283)
T d2fnaa2 10 NRKDFFDREKEIEKLKGL-----RAPITLVLGLRRTGKSSIIKIGINELNLPY----------IYLDLRKFEERNYISYK 74 (283)
T ss_dssp SGGGSCCCHHHHHHHHHT-----CSSEEEEEESTTSSHHHHHHHHHHHHTCCE----------EEEEGGGGTTCSCCCHH
T ss_pred ChhhCCChHHHHHHHHhc-----cCCEEEEEcCCCCcHHHHHHHHHHHCCCCe----------EEEEeccccccccccHH
Confidence 358899999999888763 346789999999999999999999886321 00011111000000
Q ss_pred ------------------------CCccEEEEccC------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHH
Q psy13354 466 ------------------------CFMDYIEMDAA------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHA 515 (1342)
Q Consensus 466 ------------------------~~~d~~~i~~~------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~ 515 (1342)
........... .......+.++++.+... ..++.++++||.+.+....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~i~id~~~~~~~~~ 152 (283)
T d2fnaa2 75 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQA--SKDNVIIVLDEAQELVKLR 152 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHT--CSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhh--cccccccccchhhhhcccc
Confidence 00000000000 001112344555544332 2445678899998764322
Q ss_pred ----HHHHHHhhcCCCCcEEEEEEeCCCCC---------Ch-HHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchh
Q psy13354 516 ----FNAMLKTLEEPPKYIKFILATTEPQK---------IP-ITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETS 581 (1342)
Q Consensus 516 ----~~~Ll~~Le~p~~~~vlIl~t~~~~k---------l~-~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~ 581 (1342)
...|....... ..+.++++...... .. +....+...+.+.+++.++..+++.+.+...+++. +
T Consensus 153 ~~~~~~~l~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~--~ 229 (283)
T d2fnaa2 153 GVNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF--K 229 (283)
T ss_dssp TCCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC--C
T ss_pred hHHHHHHHHHHHHhh-hhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhcCCCH--H
Confidence 23333333333 34555655443211 11 12223447899999999999999999998877654 4
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHH
Q psy13354 582 ALNLIATGAQGSMRDALSLTDQA 604 (1342)
Q Consensus 582 al~~La~~~~g~lr~a~~~L~kl 604 (1342)
.++.+.+.++|.+..+.....++
T Consensus 230 ~~~~i~~~~~G~P~~L~~~~~~~ 252 (283)
T d2fnaa2 230 DYEVVYEKIGGIPGWLTYFGFIY 252 (283)
T ss_dssp CHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 57899999999998655444433
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=97.79 E-value=1.7e-05 Score=88.76 Aligned_cols=38 Identities=42% Similarity=0.684 Sum_probs=32.7
Q ss_pred ccCcCCeeecccccC-chhHH--------HHHHHHHHHHHHHHHHhC
Q psy13354 1065 TKQIHGLFFAGQING-TTGYE--------EAASQGLLAGLNAALFSQ 1102 (1342)
Q Consensus 1065 sk~~~gL~~aGqi~g-~~gy~--------eA~~~G~~Ag~na~~~~~ 1102 (1342)
.+.|||||.|||+.+ ++|.- |+..-|.+||.|||.+++
T Consensus 270 ~~~i~gl~aaGe~~~g~hG~nrlggnsl~~~~vfg~~ag~~aa~~~~ 316 (317)
T d1qo8a2 270 SKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAKHAL 316 (317)
T ss_dssp SCEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEECCEeehhhhccCCCCCCccccchHHHHHHHHHHHHHHHHHHhh
Confidence 356899999999987 67654 799999999999999876
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.66 E-value=0.00048 Score=74.88 Aligned_cols=186 Identities=15% Similarity=0.099 Sum_probs=103.5
Q ss_pred hhccCCCCccccccchhhHHHHHHHHHc--CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 382 ARKYRPSNFNTLIGQNHISKSLINALDK--KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 382 ~~k~~p~~f~~lvGq~~~~~~L~~~l~~--~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
-..--|.. .++.|++.-++.+.+.+.. ..-...+.++|..|+|||++|+.+.+.......... ..|
T Consensus 12 ~~~~~p~~-~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f-----------~~~ 79 (277)
T d2a5yb3 12 LLGNVPKQ-MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY-----------DSI 79 (277)
T ss_dssp HHTTCBCC-CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB-----------SEE
T ss_pred cccCCCCC-CceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcC-----------ceE
Confidence 34444533 3467899999999888854 223457899999999999999999886431100000 000
Q ss_pred hhhccCCCccEEEEccCCCcCHHH----HHHHHHH-----------------------HhhcCccCCceEEEeccCccCC
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINE----MAQLLEQ-----------------------TIYAPINARYKIYVIDEVHMLT 512 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~----i~~ii~~-----------------------~~~~p~~~~~rvviIDE~~~L~ 512 (1342)
. |+.+ +....... +..+... ....-+..++-++++|++...
T Consensus 80 ~---------Wv~v--s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~- 147 (277)
T d2a5yb3 80 V---------WLKD--SGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE- 147 (277)
T ss_dssp E---------EEEC--CCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-
T ss_pred E---------EEEe--cCCCCHHHHHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHH-
Confidence 0 1111 10000011 1111100 000011234458889998742
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCC-CcchhHHHHHHHhcC
Q psy13354 513 HHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENI-KFETSALNLIATGAQ 591 (1342)
Q Consensus 513 ~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~-~i~~~al~~La~~~~ 591 (1342)
+..+ ++... ...+|++|. ...+...+...+..+++.+++.++..+.+..++..... .-.++..+.+++.++
T Consensus 148 -~~~~----~~~~~--~srilvTTR-~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~ 219 (277)
T d2a5yb3 148 -ETIR----WAQEL--RLRCLVTTR-DVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSS 219 (277)
T ss_dssp -HHHH----HHHHT--TCEEEEEES-BGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHT
T ss_pred -hhhh----hhccc--CceEEEEee-hHHHHHhcCCCCceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhC
Confidence 2222 22222 234455554 34555566677788999999999998887654322221 123556788999999
Q ss_pred CcHHHHHH
Q psy13354 592 GSMRDALS 599 (1342)
Q Consensus 592 g~lr~a~~ 599 (1342)
|.+..+.-
T Consensus 220 GlPLAl~~ 227 (277)
T d2a5yb3 220 GNPATLMM 227 (277)
T ss_dssp TCHHHHHH
T ss_pred CCHHHHHH
Confidence 99976653
|
| >d2i0za2 e.74.1.1 (A:193-361) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: HI0933 insert domain-like superfamily: HI0933 insert domain-like family: HI0933 insert domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=97.60 E-value=1.4e-07 Score=95.60 Aligned_cols=136 Identities=13% Similarity=0.012 Sum_probs=90.0
Q ss_pred CccccccCCC----cccccCcccc----------ccceeecCCCCCCCcccccCCCCCCCCccccchhhcchhH-HHHHH
Q psy13354 898 SHGRLKTGTP----PRIDKRTIDF----------SKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKT-HNIIR 962 (1342)
Q Consensus 898 ~~~~~~~~~~----~r~~~~si~~----------~~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~-~~~i~ 962 (1342)
.+++|++..| ..+.|-|+.. +.+..+.|| +.|||||+|||+++ ++|+|+....... ..-+.
T Consensus 2 aLvpl~~~~~~i~~~~L~Gisl~~v~~~~~~~~gk~~~~~~Ge-llfTh~GiSGpavl---~lS~~~~~~l~~~~~~~~~ 77 (169)
T d2i0za2 2 TEVPILSNEPFIRDRSLQGLALRDINLSVLNPKGKAIISHKMD-MLFTHFGLSGPAAL---RCSQFVVKALKKFKTNTIQ 77 (169)
T ss_dssp CSCCEECCCHHHHTTTTTTCEEEEEEEEECC----CEEEEEEE-EEECSSEEESHHHH---HHHHHHHHHHHHHCCSCEE
T ss_pred ccCCEEeCcccccCCccCCcccCCeEEEEEeCCCcEeeeeecc-EEEEcCCccchHHH---HHhHHHHHHHHhcccCceE
Confidence 4667776665 2467776532 233446799 99999999999999 9999998652211 01246
Q ss_pred hhcccCCCCc-cccccccCCCCCCcccccccCCCCCccceeEeecccccceeecCccccCCCHHHHHHHHHhcccc
Q psy13354 963 SEFKNSPIFS-GKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGM 1037 (1342)
Q Consensus 963 ~~~~~~p~~~-~~~~~~g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gl 1037 (1342)
..+|+.|.++ +++.....+......+|.++......-+-.|.+..++...+.++....+|++++..++++.|+.+
T Consensus 78 l~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~lp~~l~~~ll~~~~i~~~~~~~~ls~~~~~~L~~~Lk~~ 153 (169)
T d2i0za2 78 MSIDALPEENSEQLFQRMLKQMKEDPKKGIKNVLKGYVPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEF 153 (169)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTTSTTSBHHHHTTTSSCHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHHE
T ss_pred EEEecCCcccHHHHHHHHHHHHHhccchhHhhhcccccchHHHHHHHHHcCCcccCCHHHCCHHHHHHHHHHHhCC
Confidence 7889999997 33322221111111222222222333444566777888889999999999999999999999988
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=97.57 E-value=6.5e-05 Score=83.88 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=33.2
Q ss_pred cCeeEEec-ccceEEEe-CCeEEEEEeCC--Cc--EEEcceEEEecc
Q psy13354 821 LNLYLFQE-EVDDLIIK-TNKILGVVTKI--GI--KFFSKTVILTTG 861 (1342)
Q Consensus 821 ~~~~i~~~-~v~~l~~~-~~~~~gv~~~~--g~--~~~~~~vii~tG 861 (1342)
.+++|+.+ +|++|+.+ +|+|.||+..+ +. .+.|++||||||
T Consensus 165 ~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtG 211 (322)
T d1d4ca2 165 RGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAG 211 (322)
T ss_dssp TTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCC
T ss_pred cCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCC
Confidence 58888766 79999885 67999998654 22 499999999999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.54 E-value=6.5e-05 Score=75.81 Aligned_cols=69 Identities=12% Similarity=0.190 Sum_probs=42.6
Q ss_pred ccCCceEEEeccCccC---CHHHHHHHHHhhcCCCCcEEEEEEeCCCC--CChHHHhcc--EEEEEEcCCCHHHHHHH
Q psy13354 496 INARYKIYVIDEVHML---THHAFNAMLKTLEEPPKYIKFILATTEPQ--KIPITVLSR--CIQFNLKKMLHHDIVNN 566 (1342)
Q Consensus 496 ~~~~~rvviIDE~~~L---~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~--kl~~~L~sR--~~~i~~~~l~~~el~~~ 566 (1342)
...+..++++||++.. .....+.|.+.+++++.. +|+++.... .+...+..+ +.++...+.+.+.+.+-
T Consensus 96 ~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~--il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~nrd~~~~~ 171 (178)
T d1ye8a1 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVN--VVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILED 171 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSE--EEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHH
T ss_pred HhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCE--EEEEEccHHHHHhhceEEEEeCCEEEEECCccHHHHHHH
Confidence 3457789999998754 456678888999876433 455555433 233444443 36777766655444333
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=97.29 E-value=0.00029 Score=77.71 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=34.0
Q ss_pred cCeeEEec-ccceEEEeC-CeEEEEEeCCC--c--EEEcceEEEecc
Q psy13354 821 LNLYLFQE-EVDDLIIKT-NKILGVVTKIG--I--KFFSKTVILTTG 861 (1342)
Q Consensus 821 ~~~~i~~~-~v~~l~~~~-~~~~gv~~~~g--~--~~~~~~vii~tG 861 (1342)
.+++|+.+ +|++|+.++ |+|.||+..+. . .+.|++||||||
T Consensus 158 ~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtG 204 (308)
T d1y0pa2 158 RNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATG 204 (308)
T ss_dssp TTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCC
T ss_pred ccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccC
Confidence 78999776 799999865 69999987542 2 589999999999
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=97.04 E-value=0.0017 Score=65.49 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCc
Q psy13354 400 SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTR 479 (1342)
Q Consensus 400 ~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~ 479 (1342)
+..|...++.....++++|+||++||||.++.++.+.+... ++.+..+.+
T Consensus 40 l~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~-----------------------------vis~~N~~s- 89 (205)
T d1tuea_ 40 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA-----------------------------VISFVNSTS- 89 (205)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE-----------------------------ECCCCCSSS-
T ss_pred HHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhCCE-----------------------------EEeccCCCC-
Confidence 35666777655556899999999999999999999988521 111111100
Q ss_pred CHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHH-HHHhhcCC----------C---CcEEEEEEeCCCC---CC
Q psy13354 480 GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNA-MLKTLEEP----------P---KYIKFILATTEPQ---KI 542 (1342)
Q Consensus 480 ~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~-Ll~~Le~p----------~---~~~vlIl~t~~~~---kl 542 (1342)
.....|. .+.+++++||+......-.+. |...++.. + ...-+|+++|..- .-
T Consensus 90 ----------~F~Lq~l-~~~kv~l~dD~t~~~~~~~d~~lK~ll~G~~vsvd~KhK~~vqi~~pPliITsN~~~~~~d~ 158 (205)
T d1tuea_ 90 ----------HFWLEPL-TDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNR 158 (205)
T ss_dssp ----------CGGGGGG-TTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSS
T ss_pred ----------Ccccccc-cCCeEEEEeccccchHHHHHHHHHhccCCCeeeeecccCCcccccCCCEEEEcCCCCCcccc
Confidence 0111222 356799999987665444444 34444421 0 0112567777643 33
Q ss_pred hHHHhccEEEEEEc
Q psy13354 543 PITVLSRCIQFNLK 556 (1342)
Q Consensus 543 ~~~L~sR~~~i~~~ 556 (1342)
.+.|.+|..+++|.
T Consensus 159 ~~~L~sRi~~f~F~ 172 (205)
T d1tuea_ 159 WPYLESRITVFEFP 172 (205)
T ss_dssp CHHHHTSCEEEECC
T ss_pred chhhhheEEEEECC
Confidence 46899999999998
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.95 E-value=0.00025 Score=76.52 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=35.6
Q ss_pred ccccccchhhHHHHHHHH---HcCCCCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 390 FNTLIGQNHISKSLINAL---DKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 390 f~~lvGq~~~~~~L~~~l---~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
|.+.-+++...+.+.... .....|.++||+||||||||++|+++|+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 6 FTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred cChHHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 344444444444444433 34566788999999999999999999999874
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=96.59 E-value=0.01 Score=63.30 Aligned_cols=131 Identities=12% Similarity=0.136 Sum_probs=81.6
Q ss_pred hHHHHHHHHHcC-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCC
Q psy13354 399 ISKSLINALDKK-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS 477 (1342)
Q Consensus 399 ~~~~L~~~l~~~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~ 477 (1342)
....|...+..+ ...++++|+||+++|||+++.++.+.++. +..++.+.
T Consensus 89 f~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~------------------------------~~~~~~~~ 138 (267)
T d1u0ja_ 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF------------------------------YGCVNWTN 138 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC------------------------------EEECCTTC
T ss_pred HHHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHhcc------------------------------hhhccccC
Confidence 334556666433 45689999999999999999999998852 11111111
Q ss_pred CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC--------------CCcEEEEEEeCCCCCC-
Q psy13354 478 TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP--------------PKYIKFILATTEPQKI- 542 (1342)
Q Consensus 478 ~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p--------------~~~~vlIl~t~~~~kl- 542 (1342)
.. ....+ -.+++++++||+..-.. ..+.+.+.+... .+..++|+++++..+.
T Consensus 139 ~~-----------f~l~~-l~~k~~~~~~e~~~~~~-~~~~~K~l~gGd~i~v~~K~k~~~~~~~~p~li~s~n~i~~~~ 205 (267)
T d1u0ja_ 139 EN-----------FPFND-CVDKMVIWWEEGKMTAK-VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVI 205 (267)
T ss_dssp SS-----------CTTGG-GSSCSEEEECSCCEETT-THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEE
T ss_pred CC-----------ccccc-cCCCEEEEEeCCCcccc-HHHHHHHhcCCCceEeecccCCCcEeeCCeEEEEeCCCccccc
Confidence 10 01112 23578999999875432 334555554421 2456677777776542
Q ss_pred ---------hHHHhccEEEEEEcCC--------CHHHHHHHHHHHHHh
Q psy13354 543 ---------PITVLSRCIQFNLKKM--------LHHDIVNNLCYILNK 573 (1342)
Q Consensus 543 ---------~~~L~sR~~~i~~~~l--------~~~el~~~l~~~~~~ 573 (1342)
...|.+|...+.|... ..+++..++. ++..
T Consensus 206 ~~~~~~~~~~~~l~~R~~~~~F~~~~p~~~~~i~~~e~k~f~~-W~~~ 252 (267)
T d1u0ja_ 206 DGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR-WAKD 252 (267)
T ss_dssp ETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH-HHHH
T ss_pred CCCccccccchHhhhhEEEEECCCcCCCccCCCCHHHHHHHHH-HHHh
Confidence 4689999999988743 5666777664 4444
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.0043 Score=68.25 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEe---CCCc--EEEcceEEEecccCCCceeEecccccCCCC
Q psy13354 806 RILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVT---KIGI--KFFSKTVILTTGTFLNGKIHIGLKSYSAGR 879 (1342)
Q Consensus 806 ~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~---~~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~~g~ 879 (1342)
+..+...+.+.. +.++++|+++ +|.+|+.++|+|.||+. .+|+ .+.|++|||||| |-...-.-+
T Consensus 134 ~~~~~~~l~~~~-~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATG---------G~g~~y~~t 203 (311)
T d1kf6a2 134 FHMLHTLFQTSL-QFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATG---------GAGRVYRYN 203 (311)
T ss_dssp HHHHHHHHHHHT-TCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCC---------CCGGGSSSB
T ss_pred hHHHHhHHHHHH-ccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCC---------Ccccccccc
Confidence 445555544443 4689999887 69999999999999974 4565 368999999999 432111112
Q ss_pred CCCcchHHHHHHHHH-cCCCccc
Q psy13354 880 FGDFSTTSLAKRLKE-LQLSHGR 901 (1342)
Q Consensus 880 ~g~~~s~~l~~~l~~-~g~~~~~ 901 (1342)
++...++|.+..++. +|..+..
T Consensus 204 tn~~~~tGDG~~mA~~aGa~l~d 226 (311)
T d1kf6a2 204 TNGGIVTGDGMGMALSHGVPLRD 226 (311)
T ss_dssp SSCTTCSCHHHHHHHTTTCCEES
T ss_pred CCCCCcCcHHHHHHHhcccceee
Confidence 334447788888864 8887643
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.0067 Score=62.13 Aligned_cols=31 Identities=32% Similarity=0.418 Sum_probs=26.6
Q ss_pred cCCCCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 409 KKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 409 ~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+++.|++++|.||+|+||||++-.+|..+..
T Consensus 5 ~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~ 35 (211)
T d2qy9a2 5 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQ 35 (211)
T ss_dssp CSCTTEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3566789999999999999999999988763
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.94 E-value=0.005 Score=63.20 Aligned_cols=143 Identities=13% Similarity=0.135 Sum_probs=74.1
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHH-------
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINE------- 483 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~------- 483 (1342)
+.|++++|.||+|+||||++-.+|..+...+ ...-++..|.-.....++
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g------------------------~kV~lit~Dt~R~ga~eQL~~~a~~ 65 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKG------------------------FKVGLVGADVYRPAALEQLQQLGQQ 65 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTT------------------------CCEEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC------------------------CceEEEEeeccccchhHHHHHhccc
Confidence 5678899999999999999999998775321 112222222211111111
Q ss_pred -------------HHHHHHHHhhcCccCCceEEEeccCccCCH----HHHHHHHHhhcC-CCCcEEEEEEeCCCCCChHH
Q psy13354 484 -------------MAQLLEQTIYAPINARYKIYVIDEVHMLTH----HAFNAMLKTLEE-PPKYIKFILATTEPQKIPIT 545 (1342)
Q Consensus 484 -------------i~~ii~~~~~~p~~~~~rvviIDE~~~L~~----~~~~~Ll~~Le~-p~~~~vlIl~t~~~~kl~~~ 545 (1342)
....+..+.......++.+|+||=+..... ...+.|.++.+. .|..+++|+.++.-......
T Consensus 66 l~v~~~~~~~~~~~~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~ 145 (211)
T d1j8yf2 66 IGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDL 145 (211)
T ss_dssp HTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH
T ss_pred cCcceeecccchhhhHHHHHHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHH
Confidence 122222111111234567999998876421 123445444443 23567777776543333332
Q ss_pred HhccE-----EEEEEcCCCHHHHHHHHHHHHHhcCCC
Q psy13354 546 VLSRC-----IQFNLKKMLHHDIVNNLCYILNKENIK 577 (1342)
Q Consensus 546 L~sR~-----~~i~~~~l~~~el~~~l~~~~~~~g~~ 577 (1342)
+..++ ..+-|.++++.....-+-..+...++.
T Consensus 146 ~~~~~~~~~~~~lI~TKlDet~~~G~~l~~~~~~~lP 182 (211)
T d1j8yf2 146 ASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGAT 182 (211)
T ss_dssp HHHHHHHCTTEEEEEECTTSCSCHHHHHHHHHTTTCC
T ss_pred HhhhhcccCcceEEEecccCCCcccHHHHHHHHHCcC
Confidence 22221 456688888877666666666665544
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.033 Score=61.99 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 397 NHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 397 ~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..+..+..++.+ +..+++||||||||+++..+.+.+.
T Consensus 151 ~~Q~~A~~~al~~----~~~vI~G~pGTGKTt~i~~~l~~l~ 188 (359)
T d1w36d1 151 NWQKVAAAVALTR----RISVISGGPGTGKTTTVAKLLAALI 188 (359)
T ss_dssp CHHHHHHHHHHTB----SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcC----CeEEEEcCCCCCceehHHHHHHHHH
Confidence 3344455555543 4689999999999999877766654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.0023 Score=64.76 Aligned_cols=39 Identities=31% Similarity=0.390 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCCC---cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 401 KSLINALDKKRLH---HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 401 ~~L~~~l~~~~~~---~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+...+++..++.+ .+++|+|+||+||||+|+.+++.+++
T Consensus 4 ~~~~~~~~~~~~~~~g~vI~L~G~pGSGKTTiAk~La~~l~~ 45 (195)
T d1x6va3 4 RNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVC 45 (195)
T ss_dssp HHHHHHHHSSSCSCCCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4556666555444 37889999999999999999999975
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=95.51 E-value=0.0084 Score=65.26 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=50.0
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.|+|-..+...+.+..++ .+++++++ +|++|..+++++.||+|.+| +|+||.||+|||
T Consensus 143 g~~~p~~l~~~l~~~a~~-~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG 201 (305)
T d1pj5a2 143 GLASAARAVQLLIKRTES-AGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAG 201 (305)
T ss_dssp EEECHHHHHHHHHHHHHH-TTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCG
T ss_pred cccchhhhhhhHHhhhhc-ccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecc
Confidence 477878887777777664 79999877 79999999999999999877 599999999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.44 E-value=0.016 Score=55.78 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.9
Q ss_pred cEEEEEccCcccHHHHHHHHHHHh
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L 437 (1342)
..++|+|+||+||||+|+.+.+..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999887654
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=0.0043 Score=61.22 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=26.8
Q ss_pred CCCCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 410 KRLHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 410 ~~~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++-++.++|+|+||+||||+++.+++.+++
T Consensus 3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~~ 32 (171)
T d1knqa_ 3 NHDHHIYVLMGVSGSGKSAVASEVAHQLHA 32 (171)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 455688999999999999999999999974
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.41 E-value=0.0044 Score=61.77 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=22.1
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHh
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L 437 (1342)
.|..+++.|+||+||||+|+.+++..
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~~ 38 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVSA 38 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999887654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.30 E-value=0.012 Score=60.16 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=23.1
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..++|.||+|+||||++-.+|..+.
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999998875
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.004 Score=60.64 Aligned_cols=25 Identities=44% Similarity=0.642 Sum_probs=23.0
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.++|+||+|+||||+++.+|+.|++
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~~ 28 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLNM 28 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999974
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.24 E-value=0.026 Score=57.70 Aligned_cols=29 Identities=31% Similarity=0.323 Sum_probs=25.2
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+.|++++|.||+|+||||++-.+|..+..
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~ 37 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD 37 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45788999999999999999999988753
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=95.18 E-value=0.006 Score=57.68 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=20.8
Q ss_pred HHHHhhcCccCCceEEEeccCccCCHHH
Q psy13354 488 LEQTIYAPINARYKIYVIDEVHMLTHHA 515 (1342)
Q Consensus 488 i~~~~~~p~~~~~rvviIDE~~~L~~~~ 515 (1342)
...........+.++||+||+|.++...
T Consensus 87 ~~~~~~~~~~~~~~lvIiDEaH~~~~~~ 114 (140)
T d1yksa1 87 TYRMLEPTRVVNWEVIIMDEAHFLDPAS 114 (140)
T ss_dssp HHHHTSSSCCCCCSEEEETTTTCCSHHH
T ss_pred HHHHhccccccceeEEEEccccccChhh
Confidence 3444555667788999999999987654
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=95.15 E-value=0.027 Score=53.22 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=25.8
Q ss_pred CccCCceEEEeccCccCCHHH---HHHHHHhhcCCCCcEEEEEE
Q psy13354 495 PINARYKIYVIDEVHMLTHHA---FNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 495 p~~~~~rvviIDE~~~L~~~~---~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
..+.+..+|||||+|.++.+. ...+++.++..+...++.++
T Consensus 90 ~~~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~T 133 (136)
T d1a1va1 90 CSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLAT 133 (136)
T ss_dssp GGGCCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred hhhhcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEe
Confidence 345677899999999998764 34455555554433334444
|
| >d2gqfa2 e.74.1.1 (A:195-342) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: HI0933 insert domain-like superfamily: HI0933 insert domain-like family: HI0933 insert domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=95.05 E-value=0.00014 Score=71.19 Aligned_cols=93 Identities=16% Similarity=0.037 Sum_probs=62.3
Q ss_pred ecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccCCCCc-cccccccCCCCCCcccccccCCCC-----
Q psy13354 923 QIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFS-GKIESIGPRYCPSIEDKVYRFPKK----- 996 (1342)
Q Consensus 923 ~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~-~~~~~~g~r~~~s~~~k~~~~~~~----- 996 (1342)
..|| ++|||||+|||+++ ++|+|+.+.. ...+|+.|..+ .+. +.+....++.+
T Consensus 34 ~~G~-lLfTh~GlSGPavL---~lS~~~~~~~-------~~~i~l~p~~~~~~~----------l~~~~~~~~kk~i~~~ 92 (148)
T d2gqfa2 34 FYNQ-LLFTHRGISGPAVL---QISNYWQPTE-------SVEIDLLPNHNVEEE----------INQAKQSSPKQMLKTI 92 (148)
T ss_dssp EEEE-EEECSSEEESHHHH---HHTTTCCTTC-------CEEEESCSSSCHHHH----------HHHHHHHCTTSBHHHH
T ss_pred eecc-eEEEcCCccchHHH---HHHHHhccCc-------eEEEecCChhhHHHH----------HHHHHHhhhhhhHHHH
Confidence 4699 99999999999999 9999986542 24567788876 221 22222222222
Q ss_pred --CccceeEeecccccceeecCccccCCCHHHHHHHHHhcccc
Q psy13354 997 --KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGM 1037 (1342)
Q Consensus 997 --~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gl 1037 (1342)
..-+-.|.+..++...+ ++....+|++++..++++.++.+
T Consensus 93 L~~~lPkrl~~~ll~~~~~-~~~~~~~lsk~~~~~L~~~Lk~~ 134 (148)
T d2gqfa2 93 LVRLLPKKLVELWIEQGIV-QDEVIANISKVRVKNLVDFIHHW 134 (148)
T ss_dssp HTTTSCHHHHHHHHHTTSS-CCCBGGGCCHHHHHHHHHHHHCE
T ss_pred HHHHhHHHHHHHHHHHcCc-ccchHHHCCHHHHHHHHHHHhCC
Confidence 22233344555555444 56778899999999999999876
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.01 E-value=0.0057 Score=60.92 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=25.1
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+...++|+|++|+||||+|+++++.++.
T Consensus 6 ~~K~I~i~G~~GsGKTTla~~La~~~~~ 33 (192)
T d1lw7a2 6 FAKTVAILGGESSGKSVLVNKLAAVFNT 33 (192)
T ss_dssp TCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999999873
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.01 E-value=0.0065 Score=60.17 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.7
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+.+++|+|+||+||||+|+++++.|+.
T Consensus 6 g~~I~l~G~~GsGKTTia~~La~~L~~ 32 (183)
T d1m8pa3 6 GFTIFLTGYMNSGKDAIARALQVTLNQ 32 (183)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999999999999974
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.73 E-value=0.0068 Score=59.66 Aligned_cols=25 Identities=48% Similarity=0.590 Sum_probs=22.8
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.++|+|+||+||||+++.+++.++.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~~ 30 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSGL 30 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3789999999999999999999973
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.049 Score=59.83 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=29.4
Q ss_pred cCCeeecccccC--ch--------hHHHHHHHHHHHHHHHHHHhCC
Q psy13354 1068 IHGLFFAGQING--TT--------GYEEAASQGLLAGLNAALFSQD 1103 (1342)
Q Consensus 1068 ~~gL~~aGqi~g--~~--------gy~eA~~~G~~Ag~na~~~~~~ 1103 (1342)
++|||.+||+.+ ++ +.-+|...|-.||.+|+..+..
T Consensus 260 ~~gl~a~Ge~a~~g~HganrL~~nsl~~~~v~g~~ag~~~~~~~~~ 305 (330)
T d1neka2 260 VPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAE 305 (330)
T ss_dssp EEEEEECSSSEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCcccccccccccccccccHHHHHHHHHHHHHHHHHHhhc
Confidence 789999999864 43 5668999999999999887653
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=94.69 E-value=0.025 Score=52.09 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 803 QVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 803 q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
+.|++ .++.+++.+++ .+++++.+ .|+++.-.++.+..|.+++|+++.||.||+|||
T Consensus 59 ~~d~~-~~~~~~~~l~~-~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G 116 (117)
T d1feca2 59 GFDSE-LRKQLTEQLRA-NGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116 (117)
T ss_dssp TSCHH-HHHHHHHHHHH-TTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred cccch-hhHHHHHHHhh-CcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence 67876 67777887775 48999665 699997665556789999999999999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.56 E-value=0.0082 Score=58.95 Aligned_cols=25 Identities=44% Similarity=0.707 Sum_probs=23.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|+||||+||||+|+.+++.+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999986
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.0092 Score=59.21 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.1
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhccC
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNCI 440 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~~ 440 (1342)
.+++|+||+|+|||++++.+++.+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 358999999999999999999999754
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.35 E-value=0.03 Score=57.09 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.6
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+++++|.||+|+||||++-.+|..+..
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~ 36 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKG 36 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999988763
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.91 E-value=0.014 Score=57.34 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.8
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..++|+|++|+||||+|+.+++.++.
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~~ 29 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 47899999999999999999999863
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.91 E-value=0.016 Score=56.93 Aligned_cols=25 Identities=40% Similarity=0.632 Sum_probs=22.9
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
-.++|+||||+||||+++.+++.++
T Consensus 6 ~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 6 INILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999985
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.89 E-value=0.017 Score=58.33 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=25.2
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..|..+++.||||+||||+|+.+++.++
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3467889999999999999999999986
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.46 E-value=0.017 Score=56.64 Aligned_cols=24 Identities=46% Similarity=0.648 Sum_probs=21.8
Q ss_pred EEEEccCcccHHHHHHHHHHHhcc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++|.|++|+||||+++.+|+.++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~~ 27 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALGV 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 567799999999999999999974
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.27 E-value=0.021 Score=56.30 Aligned_cols=25 Identities=40% Similarity=0.679 Sum_probs=22.7
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.++|.|++|+||||+++.+|+.|+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg~ 28 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALGY 28 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678899999999999999999984
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.20 E-value=0.014 Score=57.43 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.4
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..++|.|++|+||||+++.+++.++
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999999875
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=92.88 E-value=0.027 Score=54.95 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=23.8
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+++.|+|++|+||||+++.+++.+..
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999864
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.86 E-value=0.025 Score=55.21 Aligned_cols=24 Identities=46% Similarity=0.674 Sum_probs=22.2
Q ss_pred EEEEccCcccHHHHHHHHHHHhcc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++|.|+||+||||+++.+|+.++.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~~ 26 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLDL 26 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 678899999999999999999973
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.028 Score=56.53 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=23.9
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
|..++|.||||+||||.|+.+++.++
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999986
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.61 E-value=0.028 Score=56.71 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=24.3
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.++++|.||||+||||.|+.+++.++.
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~g~ 34 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDYSF 34 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357899999999999999999999873
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.53 E-value=0.033 Score=57.09 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=25.0
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+|.+.+.||||+||+|.|+.+++.++
T Consensus 2 ~~piI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 2 IAPVITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999999997
|
| >d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.52 E-value=0.38 Score=41.54 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHH
Q psy13354 625 DQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQI 704 (1342)
Q Consensus 625 ~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L 704 (1342)
+++.+.++++++..++...+.+.++++..+|.+...|+..|.+.+-. ...++..+.
T Consensus 2 P~~~i~~il~~~~~~~f~~a~~~i~~l~~~Gys~~dIl~~l~~~vv~------------------------~~~i~~~~k 57 (91)
T d1sxjd1 2 PHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYIT------------------------NDNFDTNFK 57 (91)
T ss_dssp CSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHH------------------------CSSSCHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------------------cCCCCHHHH
Confidence 34567899999999999999999999999999888887766654311 112344556
Q ss_pred HHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 705 QLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 705 ~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
.+++..+.++|..|-.|.++.+-+.-++.+++.
T Consensus 58 ~~i~~~la~~d~rL~~G~~e~lQL~~lla~i~~ 90 (91)
T d1sxjd1 58 NQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQ 90 (91)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Confidence 779999999999999999999988888888764
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.49 E-value=0.028 Score=56.34 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=23.0
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.++|.||||+||||.|+.+++.++.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~~ 29 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQL 29 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4789999999999999999999973
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.17 E-value=0.073 Score=56.61 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=50.4
Q ss_pred ccccch-hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 796 AVRATR-AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 796 a~~~~r-~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
++|.+. .|+|-..+-..+.+.+++ .+++++++ +|.+|..+++++ +|.|.+| +|.|+.||+|||
T Consensus 138 ~~~~~~~g~~~p~~~~~~l~~~a~~-~Gv~i~~~~~V~~i~~~~~~v-~V~t~~g-~i~a~~VViAaG 202 (281)
T d2gf3a1 138 AIFEPNSGVLFSENCIRAYRELAEA-RGAKVLTHTRVEDFDISPDSV-KIETANG-SYTADKLIVSMG 202 (281)
T ss_dssp EEEETTCEEEEHHHHHHHHHHHHHH-TTCEEECSCCEEEEEECSSCE-EEEETTE-EEEEEEEEECCG
T ss_pred eeecccccccccccccccccccccc-ccccccCCcEEEEEEEECCEE-EEEECCc-EEEcCEEEECCC
Confidence 444444 367888888888887765 67999876 799999998886 6999887 599999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.12 E-value=0.039 Score=56.40 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=27.9
Q ss_pred HHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 403 LINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 403 L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+... .++-+.+++|+|.||+||||+|+.+++.+.
T Consensus 15 ~r~~~-~~~kg~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 15 ERTEL-RNQRGLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp HHHHH-HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHH-hCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34443 344567899999999999999999998875
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.12 E-value=0.035 Score=54.97 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=22.4
Q ss_pred EEEEccCcccHHHHHHHHHHHhcc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++|.||||+||||.++.+++.++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~~ 26 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYGI 26 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 689999999999999999999974
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=92.07 E-value=0.087 Score=55.70 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=46.9
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
+|+|-..|-+.+.+.+++ .+++++++ +|++|. .++++.+|.|.+| +|.||.||+|||
T Consensus 146 g~i~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~-~~~~~~~V~t~~g-~i~a~~vV~AaG 203 (276)
T d1ryia1 146 VHVEPYFVCKAYVKAAKM-LGAEIFEHTPVLHVE-RDGEALFIKTPSG-DVWANHVVVASG 203 (276)
T ss_dssp CBCCHHHHHHHHHHHHHH-TTCEEETTCCCCEEE-CSSSSEEEEETTE-EEEEEEEEECCG
T ss_pred eeeecccchhHHHHHHHH-cCCEEecceEEEeEE-eecceEEEecCCe-EEEcCEEEECCC
Confidence 378888888888887764 57898876 799976 4566789999887 599999999999
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.96 E-value=0.039 Score=54.81 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=22.3
Q ss_pred EEEEccCcccHHHHHHHHHHHhcc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++|.||||+||||.++.+++.+++
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~g~ 26 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKLGI 26 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 688899999999999999999974
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=0.17 Score=47.62 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 803 QVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 803 q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
+.|+.. ++.+.+.+++ .+++++.+ .|+.+.-+++.+. |.+.+|+++.||.||+|||
T Consensus 80 ~~~~~~-~~~~~~~l~~-~GV~~~~~~~V~~i~~~~~~~~-v~l~~G~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 80 ILPEYL-SNWTMEKVRR-EGVKVMPNAIVQSVGVSSGKLL-IKLKDGRKVETDHIVAAVG 136 (137)
T ss_dssp TSCHHH-HHHHHHHHHT-TTCEEECSCCEEEEEEETTEEE-EEETTSCEEEESEEEECCC
T ss_pred cCCHHH-HHHHHHHHHh-CCcEEEeCCEEEEEEecCCEEE-EEECCCCEEECCEEEEeec
Confidence 356653 4556666664 68999666 6999987777664 8999999999999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.78 E-value=0.042 Score=55.28 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=23.3
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.||||+||||.|+.+++.++
T Consensus 9 ~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 9 KIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999999886
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.70 E-value=0.043 Score=55.61 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.2
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
|..+++.|.||+||||+|+.+++.++.
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~l~~ 28 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRYLNF 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999874
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.60 E-value=0.045 Score=54.04 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.9
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..++|.|++|+||||+++.+++.+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999974
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=91.58 E-value=0.12 Score=48.35 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcccCeeEEec-ccceEEEe--CCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 808 LYKQAIRFYLENQLNLYLFQE-EVDDLIIK--TNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 808 ~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~--~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
..++.+++.++ ..|++++.+ +|+.+... ++++.+|.+++|+++.||.||+|+|
T Consensus 78 ~~~~~~~~~~~-~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 78 PVSAFYEHLHR-EAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp HHHHHHHHHHH-HHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred hhhhhhhhccc-ccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 34556666654 478999766 68888764 5679999999999999999999998
|
| >d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.48 E-value=0.67 Score=40.29 Aligned_cols=89 Identities=10% Similarity=-0.042 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHHccChHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHH
Q psy13354 625 DQKYLIQILDALAEQDGNLILSIANKIE-IYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQ 703 (1342)
Q Consensus 625 ~~~~if~l~dal~~~~~~~al~~l~~L~-~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~ 703 (1342)
..++|.++++.+.+++...|...++++. .+|.++..|+..|.+.+... .++...
T Consensus 3 ~P~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~v~~~-------------------------~~~~~~ 57 (95)
T d1iqpa1 3 RPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL-------------------------PIEEPK 57 (95)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGS-------------------------SSCHHH
T ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-------------------------CCCHHH
Confidence 3456889999999999999999999985 57999999888876644210 133355
Q ss_pred HHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 704 IQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 704 L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
...++..+.++|..|-.|.++++-++-++.++|.+
T Consensus 58 k~~ll~~la~~d~rL~~G~~e~iQL~alla~~~~i 92 (95)
T d1iqpa1 58 KVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLI 92 (95)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 67799999999999999999999999999998864
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=91.44 E-value=0.047 Score=54.26 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=22.3
Q ss_pred EEEEccCcccHHHHHHHHHHHhcc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++|.||||+||||.|+.+++.++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g~ 26 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYGT 26 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 688999999999999999999974
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=91.16 E-value=0.41 Score=49.11 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=39.5
Q ss_pred ccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 390 FNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 390 f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
|..-..|+.+++.+.+.+..+..-+ .|++|..|+|||.++-..+....
T Consensus 54 ~~lt~~Q~~~~~~i~~~~~~~~~~~-~LL~GdvGsGKT~V~~~a~~~~~ 101 (233)
T d2eyqa3 54 FETTPDQAQAINAVLSDMCQPLAMD-RLVCGDVGFGKTEVAMRAAFLAV 101 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhccCccC-eEEEcCCCCCcHHHHHHHHHHHH
Confidence 5555668999999999999987654 79999999999999877776654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.09 E-value=0.052 Score=54.27 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.6
Q ss_pred EEEEccCcccHHHHHHHHHHHhcc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++|.||||+||||.++.+|+.++.
T Consensus 6 iil~G~pGSGKsT~a~~La~~~g~ 29 (190)
T d1ak2a1 6 AVLLGPPGAGKGTQAPKLAKNFCV 29 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 567899999999999999999873
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.89 E-value=0.057 Score=53.55 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.9
Q ss_pred EEEEccCcccHHHHHHHHHHHhcc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++|.||||+||||.++.+++.++.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~g~ 28 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERFHA 28 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 678899999999999999999873
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.58 E-value=0.18 Score=48.47 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=25.5
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhccC
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLNCI 440 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~~~ 440 (1342)
.+-.++|.|+=|+|||+++|.+++.++..
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence 34578999999999999999999999754
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=90.53 E-value=0.06 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.6
Q ss_pred EEEEccCcccHHHHHHHHHHHhcc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++|.||||+||||.++.+++.++.
T Consensus 9 IiliG~PGSGKtT~a~~La~~~g~ 32 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHFEL 32 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHBCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 577799999999999999999873
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.50 E-value=0.063 Score=53.09 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=22.1
Q ss_pred EEEEccCcccHHHHHHHHHHHhcc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++|.||||+||||.++.+++.++.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~~ 26 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYGI 26 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999999874
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.38 E-value=0.7 Score=46.37 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=19.7
Q ss_pred EEEEccCcccHHHHHHHHHHHhc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.++..|.|+|||.++-.+++.+.
T Consensus 88 ~ll~~~tG~GKT~~a~~~~~~~~ 110 (206)
T d2fz4a1 88 GCIVLPTGSGKTHVAMAAINELS 110 (206)
T ss_dssp EEEEESSSTTHHHHHHHHHHHSC
T ss_pred cEEEeCCCCCceehHHhHHHHhc
Confidence 47789999999999988887765
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=90.29 E-value=0.42 Score=51.81 Aligned_cols=44 Identities=25% Similarity=0.448 Sum_probs=36.7
Q ss_pred ccCeeEEec-ccceEEEeCCeEEEEEeC---CCc--EEEcceEEEecccC
Q psy13354 820 QLNLYLFQE-EVDDLIIKTNKILGVVTK---IGI--KFFSKTVILTTGTF 863 (1342)
Q Consensus 820 ~~~~~i~~~-~v~~l~~~~~~~~gv~~~---~g~--~~~~~~vii~tGtf 863 (1342)
.++++|+.+ +|.+|+.++++|.|++.. +|+ .+.|+.||||||-|
T Consensus 170 ~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~ 219 (336)
T d2bs2a2 170 KLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY 219 (336)
T ss_dssp HHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred hccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEecccc
Confidence 379999777 799999999999998764 465 48999999999944
|
| >d1a5ta1 a.80.1.1 (A:208-330) delta prime subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: delta prime subunit species: Escherichia coli [TaxId: 562]
Probab=90.15 E-value=0.55 Score=42.89 Aligned_cols=103 Identities=15% Similarity=0.041 Sum_probs=80.0
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHH
Q psy13354 629 LIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFY 708 (1342)
Q Consensus 629 if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l 708 (1342)
...+-.++.++|.-..+..+ ..++...-+..|...+.+.++.+...+. ..+.+...-+.+.|+++|...|.+.+
T Consensus 10 c~~l~~~l~~~d~lsLl~~l-----n~e~~~~~L~WL~~lL~DalK~q~g~~~-~vN~D~~~li~~la~~~s~~~L~~~~ 83 (123)
T d1a5ta1 10 CQALAYSVPSGDWYSLLAAL-----NHEQAPARLHWLATLLMDALKRHHGAAQ-VTNVDVPGLVAELANHLSPSRLQAIL 83 (123)
T ss_dssp HHHHHHHHHHCCCGGGHHHH-----CSTTHHHHHHHHHHHHHHHTCC-------CCCTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHH-----ccccHHHHHHHHHHHHHHHHHHhcCchh-hccHhHHHHHHHHHHhcCHHHHHHHH
Confidence 34556666777665544433 3466778889999999999999987754 57888899999999999999999999
Q ss_pred HHHHHHHHhhcc--CCChhHHHHHHHHHhHc
Q psy13354 709 QISIHGRNELEL--APDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 709 ~~l~~~d~~lK~--~~~~~~~le~~ll~l~~ 737 (1342)
+.+..+...+.+ +.|.++.++-.+++.-.
T Consensus 84 ~~~~~~r~~L~~~~~lN~ELlL~~~Ll~we~ 114 (123)
T d1a5ta1 84 GDVCHIREQLMSVTGINRELLITDLLLRIEH 114 (123)
T ss_dssp HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHHHHHHH
Confidence 999999999996 78999999999988753
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=89.91 E-value=0.078 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=23.1
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.++|.|++|+||||+++.+++.|..
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999974
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=89.73 E-value=0.44 Score=53.36 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=43.6
Q ss_pred cCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
-.+..|+++--.+...+.+++.+...+ ..+||+||.|+||||+...+.+.++.
T Consensus 132 ~~~~~l~~LG~~~~~~~~l~~l~~~~~--GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 132 ATRLDLHSLGMTAHNHDNFRRLIKRPH--GIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp TTCCCGGGSCCCHHHHHHHHHHHTSSS--EEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred ccchhhhhhcccHHHHHHHHHHHhhhh--ceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 344578888777888888888876654 56999999999999999999999874
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.61 E-value=0.16 Score=50.30 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCC--CCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 400 SKSLINALDKKR--LHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 400 ~~~L~~~l~~~~--~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++.|...+.+-+ .+-.+-++|++|+||||+|+.+++.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 344544443322 2334669999999999999999998874
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.49 E-value=0.13 Score=51.81 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=24.7
Q ss_pred Ccccc-ccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHH-HHHHh
Q psy13354 389 NFNTL-IGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRI-LAKCL 437 (1342)
Q Consensus 389 ~f~~l-vGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~-iak~L 437 (1342)
.|+++ ..|..++..+. +|+ .+++.+|.|+|||+++.. +...+
T Consensus 22 g~~~l~~~Q~~ai~~l~----~~~---~~il~apTGsGKT~~a~l~i~~~~ 65 (202)
T d2p6ra3 22 GIEELFPPQAEAVEKVF----SGK---NLLLAMPTAAGKTLLAEMAMVREA 65 (202)
T ss_dssp ---CCCCCCHHHHHHHT----TCS---CEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH----cCC---CEEEEcCCCCchhHHHHHHHHHHh
Confidence 45555 34666654433 332 378999999999998743 34344
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=89.08 E-value=0.24 Score=49.49 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=17.5
Q ss_pred EEEEccCcccHHHHHHHHHHHh
Q psy13354 416 YLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L 437 (1342)
.|+.+|.|+|||.++-.++...
T Consensus 26 ~lv~~pTGsGKT~i~~~~~~~~ 47 (200)
T d1wp9a1 26 CLIVLPTGLGKTLIAMMIAEYR 47 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEeCCCCcHHHHHHHHHHHH
Confidence 5788999999999777666543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=88.76 E-value=0.33 Score=44.09 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 803 QVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 803 q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
+.|.+ .++.+++.+++ .+++++.+ .|+++.-.++...-|.+++|+.+.+|.||+|||
T Consensus 59 ~~d~~-~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 59 SFDPM-ISETLVEVMNA-EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp TSCHH-HHHHHHHHHHH-HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred hcchh-hHHHHHHHHHH-CCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 67875 45566666665 57999766 688887654433358899999999999999998
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.65 E-value=0.11 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.3
Q ss_pred EEEEccCcccHHHHHHHHHHHhc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+.+.||||+||||.|+.||+.++
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45779999999999999999997
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.05 E-value=0.15 Score=52.84 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.8
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
...+++|+||+|||+++..++....
T Consensus 27 sl~li~G~pGsGKT~l~~qia~~~~ 51 (242)
T d1tf7a2 27 SIILATGATGTGKTLLVSRFVENAC 51 (242)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998865
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.73 E-value=0.91 Score=46.53 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=22.1
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..+++||...|||++.|.++-...
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~l~~~ 66 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTALIAL 66 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEeccCchhhHHHHHHHHHHHH
Confidence 5789999999999999999987654
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=87.43 E-value=0.35 Score=51.84 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=50.6
Q ss_pred cccCeeEEec-ccceEEEeCC-------eEEEEEeC---CCc--EEEcceEEEecccCCCceeEecccccCCCCCCCcch
Q psy13354 819 NQLNLYLFQE-EVDDLIIKTN-------KILGVVTK---IGI--KFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFST 885 (1342)
Q Consensus 819 ~~~~~~i~~~-~v~~l~~~~~-------~~~gv~~~---~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s 885 (1342)
..++++++.+ ++.+|+++++ +|.||+.. +|+ .+.++.||||||-|-+ ...+. +....+
T Consensus 149 ~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~------~~~~~---t~~~~~ 219 (305)
T d1chua2 149 NHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASK------VYQYT---TNPDIS 219 (305)
T ss_dssp HCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGG------GSSSB---SCGGGC
T ss_pred hccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeecccc------ceecc---CCCCce
Confidence 3589999776 7999999865 79999863 343 4899999999994411 11122 223346
Q ss_pred HHHHHHHH-HcCCCccc
Q psy13354 886 TSLAKRLK-ELQLSHGR 901 (1342)
Q Consensus 886 ~~l~~~l~-~~g~~~~~ 901 (1342)
+|.++.++ +.|..+..
T Consensus 220 TGDG~~mA~~aGa~l~~ 236 (305)
T d1chua2 220 SGDGIAMAWRAGCRVAN 236 (305)
T ss_dssp SCHHHHHHHHTTCCEEC
T ss_pred ecccEeeccccceeeEe
Confidence 77888886 48887644
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=86.22 E-value=0.22 Score=51.65 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=21.9
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+-+.||.|+||||+++.+...+.
T Consensus 30 e~vaIvG~sGsGKSTLl~ll~gl~~ 54 (241)
T d2pmka1 30 EVIGIVGRSGSGKSTLTKLIQRFYI 54 (241)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3588999999999999999998665
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=86.08 E-value=0.57 Score=42.42 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEe
Q psy13354 803 QVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILT 859 (1342)
Q Consensus 803 q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~ 859 (1342)
+.|... ++.+++.+++ .|++++.+ .|+.+.-.++....|.+++|+++.||.||+|
T Consensus 61 ~~d~~~-~~~l~~~l~~-~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A 116 (117)
T d1aoga2 61 GFDHTL-REELTKQLTA-NGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA 116 (117)
T ss_dssp TSCHHH-HHHHHHHHHH-TTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred ccchHH-HHHHHHHHHh-cCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence 678766 6667777776 59999655 6999975544344699999999999999987
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=85.69 E-value=3.2 Score=44.48 Aligned_cols=30 Identities=27% Similarity=0.163 Sum_probs=25.6
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhccC
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCI 440 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~~~ 440 (1342)
.-++.+=++|+||+||||+...+.+.+...
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 345678999999999999999999887754
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.44 E-value=0.24 Score=48.81 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.2
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHh
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L 437 (1342)
+..++|.||+|+||||+++.+.+..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999998875
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=85.01 E-value=0.71 Score=41.90 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=48.1
Q ss_pred cccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCC---CcEEEcceEEE
Q psy13354 783 GIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKI---GIKFFSKTVIL 858 (1342)
Q Consensus 783 ~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~---g~~~~~~~vii 858 (1342)
|.+-.++.++.=+. .+.|.+ ..+.+++.+++ .+++++.+ +|+.+..+++.++ |.+.+ +.++.||.|++
T Consensus 45 G~~Vtiv~~~~~ll-----~~~d~e-i~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~~~~~~~D~vlv 116 (119)
T d3lada2 45 GAEVTVLEAMDKFL-----PAVDEQ-VAKEAQKILTK-QGLKILLGARVTGTEVKNKQVT-VKFVDAEGEKSQAFDKLIV 116 (119)
T ss_dssp TCEEEEEESSSSSS-----TTSCHH-HHHHHHHHHHH-TTEEEEETCEEEEEEECSSCEE-EEEESSSEEEEEEESEEEE
T ss_pred CCceEEEEeecccC-----Ccccch-hHHHHHHHHHh-cCceeecCcEEEEEEEeCCEEE-EEEEECCCCEEEECCEEEE
Confidence 44445555554321 267888 47777777764 69999666 6999988776543 33333 25799999999
Q ss_pred ecc
Q psy13354 859 TTG 861 (1342)
Q Consensus 859 ~tG 861 (1342)
|||
T Consensus 117 AvG 119 (119)
T d3lada2 117 AVG 119 (119)
T ss_dssp CSC
T ss_pred eeC
Confidence 998
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=84.91 E-value=1 Score=45.71 Aligned_cols=25 Identities=32% Similarity=0.247 Sum_probs=21.3
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..+++||...|||++.|.++-...
T Consensus 36 ~~~iiTGpN~~GKSt~lk~i~l~~i 60 (224)
T d1ewqa2 36 ELVLITGPNMAGKSTFLRQTALIAL 60 (224)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCccccchhhhhhHHHHH
Confidence 3689999999999999998876643
|
| >d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.90 E-value=4.3 Score=34.76 Aligned_cols=88 Identities=13% Similarity=0.050 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHH
Q psy13354 626 QKYLIQILDALAEQDGNLILSIANKIE-IYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQI 704 (1342)
Q Consensus 626 ~~~if~l~dal~~~~~~~al~~l~~L~-~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L 704 (1342)
...|-++++.+.+++...|...++++. .+|.++..|+..|.+.+... + -.+...-
T Consensus 3 P~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~i~~~-------~-----------------~~~~~~k 58 (95)
T d1sxjc1 3 PSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY-------E-----------------LQNEETR 58 (95)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS-------C-----------------CSSHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------C-----------------CCCHHHH
Confidence 345788999999999999999999986 56999999888887755221 0 0112233
Q ss_pred HHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 705 QLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 705 ~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
..++..++++|..|-.|.++.+-+..++-.++.
T Consensus 59 ~~ll~~la~~e~rL~~G~~e~lQL~~lla~~~~ 91 (95)
T d1sxjc1 59 VHLLTKLADIEYSISKGGNDQIQGSAVIGAIKA 91 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 568899999999999999999988888777654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=84.38 E-value=0.94 Score=41.23 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=45.3
Q ss_pred cccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 783 GIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 783 ~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
|.+-.++-+++.|- ..+.|+.. ++.+++.+++ .|++++.+ .|+.+ +++. |.+.||+.+.||.||+|||
T Consensus 53 g~~Vtli~~~~~~l----~~~~~~~~-~~~~~~~l~~-~GV~i~~~~~v~~~--~~~~---v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 53 GVHVSLVETQPRLM----SRAAPATL-ADFVARYHAA-QGVDLRFERSVTGS--VDGV---VLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp TCEEEEEESSSSTT----TTTSCHHH-HHHHHHHHHT-TTCEEEESCCEEEE--ETTE---EEETTSCEEECSEEEECSC
T ss_pred cceEEEEeeccccc----cccCCHHH-HHHHHHHHHH-CCcEEEeCCEEEEE--eCCE---EEECCCCEEECCEEEEeeC
Confidence 34444555454432 22556643 5666677764 48999655 68765 4554 5789999999999999998
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.04 E-value=0.29 Score=47.28 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=23.3
Q ss_pred EEEEEccCcccHHHHHHHHHHHhccC
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNCI 440 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~~ 440 (1342)
++-++|.+|+||||++..+++.|...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 57799999999999999999998754
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=83.89 E-value=0.76 Score=48.04 Aligned_cols=38 Identities=26% Similarity=0.187 Sum_probs=27.7
Q ss_pred HHHHHHHcCCC--CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 402 SLINALDKKRL--HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 402 ~L~~~l~~~~~--~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.|-.++..|.+ .+...|+||||+|||+++-.++...-.
T Consensus 41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~ 80 (263)
T d1u94a1 41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 80 (263)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 33344432433 368999999999999999998887653
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=83.56 E-value=2.2 Score=41.08 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=18.9
Q ss_pred EEEEEccCcccHHHHHHHHHH
Q psy13354 415 AYLFTGTRGVGKTTISRILAK 435 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak 435 (1342)
.+.|.|.+|+|||++.+.+..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~ 27 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLG 27 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.29 E-value=1.9 Score=45.37 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.7
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+-|.||.|+||||+++.++..+.
T Consensus 63 e~vaivG~nGsGKSTLl~~i~Gl~~ 87 (281)
T d1r0wa_ 63 EMLAITGSTGSGKTSLLMLILGELE 87 (281)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCc
Confidence 4578999999999999999987654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=83.07 E-value=3.2 Score=39.47 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=18.7
Q ss_pred EEEEEccCcccHHHHHHHHHH
Q psy13354 415 AYLFTGTRGVGKTTISRILAK 435 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak 435 (1342)
.+.+.|++|+|||++.+.+..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999864
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.95 E-value=0.31 Score=48.50 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.1
Q ss_pred EEEEccCcccHHHHHHHHHHHhc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
++|.||+|+|||++++.+++...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999998864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.85 E-value=0.3 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEEEccCcccHHHHHHHHHHHhc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
++|+||+|+|||++++.+++...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999998864
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.54 E-value=1.5 Score=44.72 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=22.4
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|+|+||+|||+++..++....
T Consensus 38 ~~~~i~G~~GsGKT~lalq~~~~~~ 62 (258)
T d1v5wa_ 38 AITEAFGEFRTGKTQLSHTLCVTAQ 62 (258)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999987654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.51 E-value=0.35 Score=48.80 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.8
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
-.+-++|++|+||||+++.+++.++.
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~~l~~ 28 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQLLGQ 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhch
Confidence 35669999999999999999999874
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=82.29 E-value=0.31 Score=51.39 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=34.0
Q ss_pred cccccCcCCeeecccccCchhHHHHHHHHHHHHHHHHHHhCC
Q psy13354 1062 SLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQD 1103 (1342)
Q Consensus 1062 tlesk~~~gL~~aGqi~g~~gy~eA~~~G~~Ag~na~~~~~~ 1103 (1342)
+|++ .+|||||||+..|-..-..|.++|..|+-.+..++..
T Consensus 331 ~~~t-~~pglf~aGd~~~g~~~~~A~~~G~~aA~~i~~~L~~ 371 (373)
T d1seza1 331 KMEK-NLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLES 371 (373)
T ss_dssp HHHH-HSTTEEECCSSSSCSSHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccCC-CCCCEEEEecCCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 5665 4899999999988655668999999999998887764
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=82.01 E-value=3.1 Score=43.21 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=23.3
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
......|+||+|+|||+++..++...-
T Consensus 56 ~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 56 RGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEecCCccchHHHHHHHHHHHH
Confidence 346899999999999999999888764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=81.52 E-value=0.34 Score=50.58 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=28.1
Q ss_pred CceEEEeccCc-cCCHHHHHHHHHhhcCCCCcEEEEEEeCCCC
Q psy13354 499 RYKIYVIDEVH-MLTHHAFNAMLKTLEEPPKYIKFILATTEPQ 540 (1342)
Q Consensus 499 ~~rvviIDE~~-~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~ 540 (1342)
+++|+|+||+- .|.......+++.+........+|++|++.+
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~ 214 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 214 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 66799999987 6777766667666654322333566777665
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.18 E-value=0.43 Score=47.64 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=23.3
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
....++|+||||+|||+++..++....
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999987654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=80.95 E-value=1 Score=40.65 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeC-CeEEEEE---eCCCcEEEcceEEEecc
Q psy13354 803 QVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKT-NKILGVV---TKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 803 q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~-~~~~gv~---~~~g~~~~~~~vii~tG 861 (1342)
+.|++. ++.+++.++. .+++++.+ +|+.+.-++ +++.++. +.+++.++||.||+|||
T Consensus 60 ~~d~~~-~~~~~~~l~~-~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 60 IKDNET-RAYVLDRMKE-QGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp CCSHHH-HHHHHHHHHH-TTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred ccccch-hhhhhhhhhc-cccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 678766 5666777764 58999766 688887653 4555554 34567799999999998
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.52 E-value=0.42 Score=49.31 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.5
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++++||||+|||+++..++....
T Consensus 37 ~~~li~G~pGsGKT~~~lq~~~~~~ 61 (254)
T d1pzna2 37 AITEVFGEFGSGKTQLAHTLAVMVQ 61 (254)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999987764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.26 E-value=0.4 Score=49.07 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.3
Q ss_pred cEEEEEccCcccHHHHHHHHHHH
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKC 436 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~ 436 (1342)
..++|+||||+|||+++..++..
T Consensus 35 ~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 35 SITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999888754
|