Psyllid ID: psy13376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
Protein Sequence
MDIPTTVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRALKLKSCHEAVKNKTRYRVHPMLYEILSNEEALDDALMNSFGETMDVLYAQEDAITDNITSAQIASLGG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHccccccHHccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEccccccccccccccccccccEEEcccccccccccHHHccccccccEEEccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEcHHHcEEEccccccccccccccHHHHcccccHHHHHHHccccccccHHHccccHHHHHEcccHHHcccccEEEccccccccHHHHcccccccEEEcccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHcccccccEEEcccccccEcHHHcccccccEEEcccccccccHHHHHcHHHHHHHccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccc
Coil and Loop (DISEMBL)
MDIPTTVDRIKKIGlikdragdesTLKNLAQVLQNAPaiinedllskkgvISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHlgrlniernpvcdkenvdGFAIAMVpqlqcynnhiiLEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYefgtsqhslRQNEVDEFQAVYRALKLKSCHEAvknktryrvhPMLYEILSNEEALDDALMNSFGETMDVLYAQEDAITDNITSAQIASLGG
Flexible Loop (DISEMBL)
mdipttvdrikkiglikdragdeSTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHlgrlniernpvcDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNAlasqrkseekSKAFVENLEGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRALKLkscheavknktryrvHPMLYEILSNEEALDDALMNSFGETMDVLYAQEDAITDNITSAQIASLGG
Low Complexity Region (SEG)
MDIPTTVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTlvnlkvlnlkMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRALKLKSCHEAVKNKTRYRVHPMLYEILSNEEALDDALMNSFGETMDVLYAQEDAITDNITSAQIASLGG
Disordered region (IsUnstruct)
*********IKKIGLIKDR*****TLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETL*************************FVENLEGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRALKLKSCHEAVKNKTRYRVHPMLYEILSNEEALDDALMNSFGETMDVLYAQEDAITDNI**********
Disordered Region (DISOPRED)
*DIPTTVDRIKKIGL**********LKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHM*************************************LEGDFLFNVQFEN**************************NFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYR******************VHPMLY***********ALMNSFGETMDVLYAQEDAITDNITSAQIASL**
Disordered Region (DISEMBL)
MDIPTTVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQR*****************AFVENLEGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRALKLKSCHEAVKNKTRYRVHPMLYEILSNEEALDDALMNSFGETMDVLYAQEDAITDNITSAQIASLGG
Disordered Region (DISPRO)
*DIPTTVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRALKLKSCHEAVKNKTRYRVHPMLYEILSNEEALDDALMNSFGETMDVLYAQEDAITDNITSAQIA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIPTTVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRALKLKSCHEAVKNKTRYRVHPMLYEILSNEEALDDALMNSFGETMDVLYAQEDAITDNITSAQIASLGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	417	2.2.26 [Sep-21-2011]
Q9H069	523	Leucine-rich repeat-conta	no	N/A	0.673	0.537	0.348	2e-38
Q9D5E4	523	Leucine-rich repeat-conta	yes	N/A	0.707	0.564	0.347	4e-37
Q4R6X9	523	Leucine-rich repeat-conta	N/A	N/A	0.726	0.579	0.337	3e-36
Q5XI54	523	Leucine-rich repeat-conta	yes	N/A	0.707	0.564	0.353	9e-36
Q7Z7A1	2325	Centriolin OS=Homo sapien	no	N/A	0.434	0.077	0.345	3e-14
Q3UM45	361	Protein phosphatase 1 reg	no	N/A	0.354	0.409	0.344	4e-13
Q3T0W4	360	Protein phosphatase 1 reg	no	N/A	0.354	0.411	0.344	5e-13
Q5HZV9	360	Protein phosphatase 1 reg	no	N/A	0.354	0.411	0.337	8e-13
Q15435	360	Protein phosphatase 1 reg	no	N/A	0.354	0.411	0.344	8e-13
Q32PL1	345	Protein phosphatase 1 reg	no	N/A	0.153	0.185	0.407	9e-13

>sp|Q9H069|LRC48_HUMAN Leucine-rich repeat-containing protein 48 OS=Homo sapiens GN=LRRC48 PE=2 SV=2

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/290 (34%), Positives = 163/290 (56%), Gaps = 9/290 (3%)

Query: 60  QESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVC 118
           +E+  LA++  I +K + ++ L  + + +I+NLW  ENL +L L  N I  IE L+ L  
Sbjct: 29  EEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFENLRKLQLDNNIIEKIEGLENLAH 88

Query: 119 LEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLAS 178
           L  LDL +N IE I+GLDTLVNL+ L+L  NRI  I+ LD L KL++ ++  NRI ++ +
Sbjct: 89  LVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNRIDNMMN 148

Query: 179 LVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYD 238
           ++YLRRFK L  L++ RNP+ + E+   F  A +P L   +   I +  ++ A  +H Y 
Sbjct: 149 IIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLDYRRIDDHTKKLAEAKHQYS 208

Query: 239 VRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCT 298
           +     ++ ++Q + ++  A + + E+   AFVE+L G FLF+  +  D EG     L  
Sbjct: 209 IDELKHQENLMQAQLEDEQAQREELEKHKTAFVEHLNGSFLFDSMYAEDSEGN---NLSY 265

Query: 299 IPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYR 348
           +P      V EL   +K  F+ +   ++E+G  Q   R+ E+D F    R
Sbjct: 266 LP-----GVGELLETYKDKFVIICVNIFEYGLKQQEKRKTELDTFSECVR 310

Homo sapiens (taxid: 9606)

>sp|Q9D5E4|LRC48_MOUSE Leucine-rich repeat-containing protein 48 OS=Mus musculus GN=Lrrc48 PE=2 SV=1

 Score =  156 bits (394), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 170/308 (55%), Gaps = 13/308 (4%)

Query: 37  PAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMME 95
           P ++++D+L  K  + E      +E+  LA++  I +K + ++ L  + + +I+NLW  E
Sbjct: 10  PKVMDDDML--KAAVGEQ--GPQEEAGQLAKQEGILFKDVLSLQLDFQNILRIDNLWQFE 65

Query: 96  NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIE 155
           NL +L L+ N I  IE L  L+ L  LDL +N IE I+GLDTLVNL+ L+L  NRI  ++
Sbjct: 66  NLKKLQLNNNIIERIEGLTNLIHLVWLDLSFNNIEAIEGLDTLVNLEDLSLSNNRISKVD 125

Query: 156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
            LD L KL++ ++  N+I ++ +++YLRRF  L  L++  NPV + E    F  A +  L
Sbjct: 126 SLDALVKLQVLSLGNNQISNMMNIIYLRRFPCLRTLSLAGNPVSEAEEYKMFIYAYLSDL 185

Query: 216 QCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLE 275
              +   + E  R  A  +H Y +     ++  +Q + +   A Q K EE   AFVE+L 
Sbjct: 186 VYLDFRRVDEQMREMAKMKHQYSIDELKHREAQLQMKLEEEQAKQEKLEEHKMAFVEHLN 245

Query: 276 GDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSL 335
           G FLF+  +  DVEG    KL  +P      V EL   +K  F+ +   ++E+G +Q   
Sbjct: 246 GPFLFDSMYSEDVEGN---KLSYLP-----GVRELLEAYKDKFVIICLNIFEYGLNQQEK 297

Query: 336 RQNEVDEF 343
           R+ E+D F
Sbjct: 298 RKVELDTF 305

Mus musculus (taxid: 10090)

>sp|Q4R6X9|LRC48_MACFA Leucine-rich repeat-containing protein 48 OS=Macaca fascicularis GN=LRRC48 PE=2 SV=1

 Score =  153 bits (386), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 177/317 (55%), Gaps = 14/317 (4%)

Query: 37  PAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMME 95
           P ++++D+L  K  + E      +E+  LA++  I +K + ++ L  + + +I+NLW  E
Sbjct: 10  PKVMDDDML--KLAVGEQ--GPQEEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFE 65

Query: 96  NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIE 155
           NL +L L  N I  I  L+ L  L  LDL +N IE I+GLDTLVNL+ L+L  NRI  I+
Sbjct: 66  NLRKLQLDNNIIEKIGGLENLTHLVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKID 125

Query: 156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
            LD L KL++ ++  N+I ++ ++VYLRRF+ L  L++  NP+ + E+   F  A +P L
Sbjct: 126 SLDALVKLQVLSLGNNQIDNMMNIVYLRRFQCLRTLSLSGNPISEAEDYKMFICAYLPDL 185

Query: 216 QCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLE 275
              +   I +  +  A  +H Y +     ++ ++Q   Q+  A Q + E+   AFVE+L 
Sbjct: 186 VYLDFRRIDDHTKELAEAKHQYSIDELKHRENLMQVRLQDERARQEELEKHKTAFVEHLN 245

Query: 276 GDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSL 335
           G FLF+  +  D EG    KL  +P      V+EL   +K  F+ +   ++E+G  Q   
Sbjct: 246 GSFLFDSMYAEDSEGN---KLSYLP-----GVSELLEAYKDKFVIICMNIFEYGLKQQEK 297

Query: 336 RQNEVDEF-QAVYRALK 351
           R+ E+D F + V+ A++
Sbjct: 298 RKIELDTFSECVHEAIQ 314

Macaca fascicularis (taxid: 9541)

>sp|Q5XI54|LRC48_RAT Leucine-rich repeat-containing protein 48 OS=Rattus norvegicus GN=Lrrc48 PE=2 SV=1

 Score =  151 bits (382), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 171/308 (55%), Gaps = 13/308 (4%)

Query: 37  PAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMME 95
           P ++++D+L  K  + E      +E+  LA++  I +K + A+ L  + + +I+NLW  E
Sbjct: 10  PKVMDDDML--KVAVGEQ--GPQEEAGQLAKQEGILFKDVLALQLDFQNILRIDNLWQFE 65

Query: 96  NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIE 155
           NL +L L+ N I  IE L+ L  L  LDL +N IE I+GLDTLVNL+ L+L  NRI  I+
Sbjct: 66  NLRKLQLNNNIIERIEGLENLTHLVWLDLSFNNIEAIEGLDTLVNLEDLSLSHNRISKID 125

Query: 156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
            LD L  L++ ++  N+I ++ +++YLRRF  L  L++  NPV + E    F  A +P L
Sbjct: 126 SLDPLVNLQVLSLGNNQINNMMNIIYLRRFPCLRTLSLSGNPVSEAEEYKVFIYAYLPDL 185

Query: 216 QCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLE 275
              +   + E  R  A  +H Y +     ++ ++Q   +   A Q+K  E   AFVE+L 
Sbjct: 186 VYLDFRRVDEQAREVAKMKHQYSIDELKHREALMQIRLEEEQAKQQKLAEHKMAFVEHLN 245

Query: 276 GDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSL 335
           G FLF+  + +DVEG    KL  +P      V EL   +K  F+ +   ++E+G SQ   
Sbjct: 246 GPFLFDSMYSDDVEGN---KLSYLP-----GVGELLEAYKDKFVIICLNIFEYGLSQQEK 297

Query: 336 RQNEVDEF 343
           R+ E+D F
Sbjct: 298 RKIELDTF 305

Rattus norvegicus (taxid: 10116)

>sp|Q7Z7A1|CNTRL_HUMAN Centriolin OS=Homo sapiens GN=CNTRL PE=1 SV=2

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 101/197 (51%), Gaps = 16/197 (8%)

Query: 46  SKKGV--ISENLLSLLQESTNLAEKLQIYKLIKAVNLRI-----KTLRKIENLWMMENLV 98
           S  GV  I+E L+  L +  NLA       LIK++NL +     K  + IENL     L 
Sbjct: 76  SHAGVRYITEALIKKLTKQDNLA-------LIKSLNLSLSKDGGKKFKYIENLEKCVKLE 128

Query: 99  ELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGL- 157
            L+LS N IG IE LD+L+ L +L+L YN+I +I+G++ + NL+ LNL  N IE I    
Sbjct: 129 VLNLSYNLIGKIEKLDKLLKLRELNLSYNKISKIEGIENMCNLQKLNLAGNEIEHIPVWL 188

Query: 158 -DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQ 216
              L+ L + N+  N+I SL  +  L+  + L  L +  NPV    +   F I  +  L+
Sbjct: 189 GKKLKSLRVLNLKGNKISSLQDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHLRSLE 248

Query: 217 CYNNHIILEDERRTALE 233
                 +   +R+ A E
Sbjct: 249 SLEGQPVTTQDRQEAFE 265

Involved in cell cycle progression and cytokinesis. During the late steps of cytokinesis, anchors exocyst and SNARE complexes at the midbody, thereby allowing secretory vesicle-mediated abscission.

Homo sapiens (taxid: 9606)

>sp|Q3UM45|PP1R7_MOUSE Protein phosphatase 1 regulatory subunit 7 OS=Mus musculus GN=Ppp1r7 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 3/151 (1%)

Query: 67  EKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGY 126
           E L++ K +K++ LR   ++ IENL  +++L ELDL  N I  IENL+ L  LE LD+ +
Sbjct: 93  EGLEVLKKVKSLCLRQNLIKCIENLEELQSLRELDLYDNQIKKIENLEALTELEVLDISF 152

Query: 127 NRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFK 186
           N +  I+G+D L  LK L L  N+I  IE + +L +L++  + +NRI+++ ++  L    
Sbjct: 153 NMLRNIEGIDKLTQLKKLFLVNNKINKIENISNLHQLQMLELGSNRIRAIENIDTL---T 209

Query: 187 HLGRLNIERNPVCDKENVDGFAIAMVPQLQC 217
           +L  L + +N +   +N+D      V  +Q 
Sbjct: 210 NLESLFLGKNKITKLQNLDALTNLTVLSVQS 240

Regulatory subunit of protein phosphatase 1.

Mus musculus (taxid: 10090)

>sp|Q3T0W4|PP1R7_BOVIN Protein phosphatase 1 regulatory subunit 7 OS=Bos taurus GN=PPP1R7 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 85/151 (56%), Gaps = 3/151 (1%)

Query: 67  EKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGY 126
           E  ++ K +K + LR   ++ IENL  +++L ELDL  N I  IENLD L  LE LD+ +
Sbjct: 92  EGFEVLKKVKTLCLRQNLIKCIENLEGLQSLRELDLYDNQIRRIENLDALTELEVLDISF 151

Query: 127 NRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFK 186
           N +  I+G+D L  LK L L  N+I  IE +  L +L++  + +NRI+++ ++  L    
Sbjct: 152 NLLRNIEGIDKLTRLKKLFLVNNKINKIENISSLHQLQMLELGSNRIRAIENIDTL---T 208

Query: 187 HLGRLNIERNPVCDKENVDGFAIAMVPQLQC 217
           +L  L + +N +   +N+D      V  +Q 
Sbjct: 209 NLESLFLGKNKITKLQNLDALTNLTVLSMQS 239

Regulatory subunit of protein phosphatase 1. Inactivates the PPP1CC isoform 2 during epididymal sperm maturation.

Bos taurus (taxid: 9913)

>sp|Q5HZV9|PP1R7_RAT Protein phosphatase 1 regulatory subunit 7 OS=Rattus norvegicus GN=Ppp1r7 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 88/151 (58%), Gaps = 3/151 (1%)

Query: 67  EKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGY 126
           E  ++ K +K++ LR   ++ IENL  +++L ELDL  N I  IENL+ L  LE LD+ +
Sbjct: 92  EGFEVLKKVKSLCLRQNLIKCIENLDELQSLRELDLYDNQIKKIENLEALTELEVLDISF 151

Query: 127 NRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFK 186
           N +  I+G+D L  LK L L  N+I  IE +  L++L++  + +NRI+++ ++  L    
Sbjct: 152 NLLRNIEGIDKLTQLKKLFLVNNKINKIENISTLQQLQMLELGSNRIRAIENIDTL---T 208

Query: 187 HLGRLNIERNPVCDKENVDGFAIAMVPQLQC 217
           +L  L + +N +   +N+D  +   V  +Q 
Sbjct: 209 NLESLFLGKNKITKLQNLDALSNLTVLSMQS 239

Regulatory subunit of protein phosphatase 1.

Rattus norvegicus (taxid: 10116)

>sp|Q15435|PP1R7_HUMAN Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 3/151 (1%)

Query: 67  EKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGY 126
           E  ++ K +K + LR   ++ IENL  +++L ELDL  N I  IENL+ L  LE LD+ +
Sbjct: 92  EGFEVLKKVKTLCLRQNLIKCIENLEELQSLRELDLYDNQIKKIENLEALTELEILDISF 151

Query: 127 NRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFK 186
           N +  I+G+D L  LK L L  N+I  IE L +L +L++  + +NRI+++ ++  L    
Sbjct: 152 NLLRNIEGVDKLTRLKKLFLVNNKISKIENLSNLHQLQMLELGSNRIRAIENIDTL---T 208

Query: 187 HLGRLNIERNPVCDKENVDGFAIAMVPQLQC 217
           +L  L + +N +   +N+D      V  +Q 
Sbjct: 209 NLESLFLGKNKITKLQNLDALTNLTVLSMQS 239

Regulatory subunit of protein phosphatase 1.

Homo sapiens (taxid: 9606)

>sp|Q32PL1|PP1R7_DANRE Protein phosphatase 1 regulatory subunit 7 OS=Danio rerio GN=ppp1r7 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 69/108 (63%)

Query: 67  EKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGY 126
           E L++    K ++LR   +++IENL  + +L ELDL  N I  +ENL  L  LE+LD+ +
Sbjct: 77  EGLEVLLKAKTISLRQNLIKRIENLESLVSLRELDLYDNQIRKLENLQALTELEQLDVSF 136

Query: 127 NRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQ 174
           N + +I+GLD+L  +K L L  N+I +I  LDHL  L++  + +NRI+
Sbjct: 137 NLLRKIEGLDSLTKVKKLFLLHNKIASIANLDHLTSLQMLELGSNRIR 184

Regulatory subunit of protein phosphatase 1.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
269784859	523	LRRC48-like protein [Saccoglossus kowale	0.700	0.558	0.372	1e-39
345800350	523	PREDICTED: LOW QUALITY PROTEIN: leucine-	0.707	0.564	0.350	9e-38
449281382	531	Leucine-rich repeat-containing protein 4	0.628	0.493	0.375	2e-37
343962161	523	leucine rich repeat-containing protein 4	0.729	0.581	0.336	4e-37
397474777	457	PREDICTED: leucine-rich repeat-containin	0.681	0.621	0.350	4e-37
332848373	457	PREDICTED: leucine-rich repeat-containin	0.681	0.621	0.350	4e-37
332848371	523	PREDICTED: leucine-rich repeat-containin	0.681	0.543	0.350	5e-37
426349214	523	PREDICTED: leucine-rich repeat-containin	0.681	0.543	0.350	8e-37
426349218	457	PREDICTED: leucine-rich repeat-containin	0.681	0.621	0.350	9e-37
117644234	523	hypothetical protein [synthetic construc	0.673	0.537	0.348	1e-36

>gi|269784859|ref|NP_001161581.1| LRRC48-like protein [Saccoglossus kowalevskii] gi|268054157|gb|ACY92565.1| LRRC48-like protein [Saccoglossus kowalevskii]

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 162/311 (52%), Gaps = 19/311 (6%)

Query: 37  PAIINEDLLSK----KGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLW 92
           PA+I+E++L K    +G   E      QE  +  + +Q+        L  K + KI+NLW
Sbjct: 10  PAVIDEEMLLKAVEEQGPKEEAGRIAKQEGIDFCDVVQL-------RLDFKNILKIDNLW 62

Query: 93  MMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIE 152
               L +L L  N I  IE LDQLV L  LDL +N IE I+G D L  L+ L L  NRI 
Sbjct: 63  QFTRLTKLQLDNNIIEKIEGLDQLVNLIWLDLSFNNIEIIEGFDKLTKLEDLTLYNNRIS 122

Query: 153 TIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMV 212
            IE +D L KL + ++  N I+ L ++ YLRRFK+L  LN+  N  CD  N   + +A +
Sbjct: 123 VIENMDALTKLHVLSVGNNNIEQLENVKYLRRFKNLQTLNLSGNEFCDDGNYKAYIVAHI 182

Query: 213 PQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVE 272
           P L   +  +I E  R  A EQ+ Y +      +   +R+R +    Q   E    A+VE
Sbjct: 183 PSLVYLDFRLIDESTRVAANEQYKYSIEELEADENAEERKRVSEKEKQDLFELHKSAYVE 242

Query: 273 NLEGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQ 332
           NL G FLF+  F +D EG    KL ++P      V EL   FK  F E+  +L+EFG  +
Sbjct: 243 NLNGPFLFDSMFFDDTEGP---KLASLP-----GVEELLITFKEKFTEICQQLFEFGLQE 294

Query: 333 HSLRQNEVDEF 343
           H+ R+ EV EF
Sbjct: 295 HAKRKKEVSEF 305

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|345800350|ref|XP_536663.3| PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 48 [Canis lupus familiaris]

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 13/308 (4%)

Query: 37  PAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMME 95
           P +++ED+L  K  + E      +E+  LA +  I +K + ++ L  + + +I++LW  E
Sbjct: 10  PRVMDEDML--KLAVGEQ--GPREEAGQLARQEGILFKDVLSLRLDFQNILRIDSLWEFE 65

Query: 96  NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIE 155
           NL +L L  N I  IE L+QLV L  LDL +N IE I+GLDTLVNL+ L+L  NRI  I+
Sbjct: 66  NLTKLQLDNNIIEKIEGLEQLVHLVWLDLSFNNIEAIEGLDTLVNLEDLSLFNNRISKID 125

Query: 156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
            LD L KL++ ++  N+I ++ +++YLRRFK L  L++  NP+ + E+   F  A +P L
Sbjct: 126 SLDALVKLQVLSLGNNQIGNMMNIIYLRRFKDLRTLSLSGNPIAESEDYKMFVCAYLPDL 185

Query: 216 QCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLE 275
              + H I +   + A  +H Y +     ++ ++Q   ++  A Q + E+   AFVE+L 
Sbjct: 186 VYLDFHRIDDHMAKMAESKHQYSIDELKHRENLIQSRLEDEQAQQEELEKHKAAFVEHLN 245

Query: 276 GDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSL 335
           G FLF+  +  DVEG    KL  +P      ++EL   +K  F+ +   ++E+G  Q   
Sbjct: 246 GSFLFDSMYTEDVEGN---KLAYLP-----GISELLQAYKDKFVIICLNIFEYGLKQQEK 297

Query: 336 RQNEVDEF 343
           R+ E+D F
Sbjct: 298 RKLELDTF 305

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449281382|gb|EMC88462.1| Leucine-rich repeat-containing protein 48 [Columba livia]

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/274 (37%), Positives = 156/274 (56%), Gaps = 12/274 (4%)

Query: 72  YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQ 131
           +K +  + L  + + +I+NLW  ENL +L L  N I  IE L+ LV L  LDL +N IE 
Sbjct: 41  FKDVTELQLSFRNILQIDNLWQFENLTKLQLDNNIIEKIEALECLVHLVWLDLSFNNIEV 100

Query: 132 IQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
           I+GLDTLV L+ L+L  NRI  IE +D L++L++F+I  N + +L  ++YLRRFK+L  L
Sbjct: 101 IEGLDTLVKLQDLSLYNNRISKIEHMDTLQELQIFSIGKNNLTTLEDVIYLRRFKNLRTL 160

Query: 192 NIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETL--KDLMV 249
           N+  NP+CD E    F +A +P L   +  ++ +  R  A+ +  Y  RT+ L  ++  V
Sbjct: 161 NLTGNPLCDDERYMLFVVAYLPNLMYLDFKLVSDSTREAAVLE--YQDRTDLLEGEEAQV 218

Query: 250 QRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAE 309
             E +   A Q++ E    AFVE L G FLF+  +E+D E     KL ++P      V++
Sbjct: 219 LAELEEKQAKQQELEYHKTAFVEYLNGSFLFDNMYEDDTEAA---KLASLP-----GVSD 270

Query: 310 LYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEF 343
           L   +   F+ V   L+ FG  ++  R+ EV EF
Sbjct: 271 LLQKYPSWFVSVCENLFNFGLKEYEKREAEVSEF 304

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|343962161|dbj|BAK62668.1| leucine rich repeat-containing protein 48 [Pan troglodytes]

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/318 (33%), Positives = 180/318 (56%), Gaps = 14/318 (4%)

Query: 36  APAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMM 94
            P ++++D+L  K  + +      +E+  LA++  I +K + ++ L  + + +I+NLW  
Sbjct: 9   GPRVMDDDML--KLAVGDQ--GPQEEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQF 64

Query: 95  ENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETI 154
           ENL +L L  N I  IE L+ L  L  LDL +N IE I+GLDTLVNL+ L+L  NRI  I
Sbjct: 65  ENLRKLQLDNNIIEKIEGLENLAHLVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKI 124

Query: 155 EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQ 214
           + LD L KL++ ++  NRI ++ +++YLRRFK L  L++ RNP+ + E+   F  A +P 
Sbjct: 125 DSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPD 184

Query: 215 LQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENL 274
           L   +   I +  ++ A  +H Y +     ++ ++Q + ++  A + + E+   AFVE+L
Sbjct: 185 LVYLDYRRIDDHTKKLAEAKHQYSIDELKHRENLMQAQLEDEQARREELEKHKTAFVEHL 244

Query: 275 EGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHS 334
            G FLF+  +  D EG    KL  +P      V EL   +K  F+ +   ++E+G  Q  
Sbjct: 245 NGSFLFDSMYAEDSEGN---KLSYLP-----GVGELLETYKDKFVIICVNIFEYGLKQQE 296

Query: 335 LRQNEVDEF-QAVYRALK 351
            R+ E+D F + V+ A++
Sbjct: 297 KRKTELDTFSECVHEAIQ 314

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397474777|ref|XP_003808837.1| PREDICTED: leucine-rich repeat-containing protein 48 isoform 3 [Pan paniscus]

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 169/294 (57%), Gaps = 10/294 (3%)

Query: 60  QESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVC 118
           +E+  LA++  I +K + ++ L  + + +I+NLW  ENL +L L  N I  IE L+ L  
Sbjct: 29  EEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFENLRKLQLDNNIIEKIEGLENLAH 88

Query: 119 LEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLAS 178
           L  LDL +N IE I+GLDTLVNL+ L+L  NRI  I+ LD L KL++ ++  NRI ++ +
Sbjct: 89  LVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNRIDNMMN 148

Query: 179 LVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYD 238
           ++YLRRFK L  L++ RNP+ + E+   F  A +P L   +   I +  ++ A  +H Y 
Sbjct: 149 IIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLVYLDYRRIDDHTKKLAEAKHQYS 208

Query: 239 VRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCT 298
           +     ++ ++Q + ++  A + + E+   AFVE+L G FLF+  +  D EG    KL  
Sbjct: 209 IDELKHRENLMQAQLEDEQARREELEKHKTAFVEHLNGSFLFDSMYAEDSEGN---KLSY 265

Query: 299 IPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEF-QAVYRALK 351
           +P      V EL   +K  F+ +   ++E+G  Q   R+ E+D F + V+ A++
Sbjct: 266 LP-----GVGELLETYKDKFVIICVNIFEYGLKQQEKRKTELDTFSECVHEAIQ 314

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332848373|ref|XP_003315635.1| PREDICTED: leucine-rich repeat-containing protein 48 isoform 2 [Pan troglodytes]

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 169/294 (57%), Gaps = 10/294 (3%)

Query: 60  QESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVC 118
           +E+  LA++  I +K + ++ L  + + +I+NLW  ENL +L L  N I  IE L+ L  
Sbjct: 29  EEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFENLRKLQLDNNIIEKIEGLENLAH 88

Query: 119 LEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLAS 178
           L  LDL +N IE I+GLDTLVNL+ L+L  NRI  I+ LD L KL++ ++  NRI ++ +
Sbjct: 89  LVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNRIDNMMN 148

Query: 179 LVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYD 238
           ++YLRRFK L  L++ RNP+ + E+   F  A +P L   +   I +  ++ A  +H Y 
Sbjct: 149 IIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLVYLDYRRIDDHTKKLAEAKHQYS 208

Query: 239 VRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCT 298
           +     ++ ++Q + ++  A + + E+   AFVE+L G FLF+  +  D EG    KL  
Sbjct: 209 IDELKHRENLMQAQLEDEQARREELEKHKTAFVEHLNGSFLFDSMYAEDSEGN---KLSY 265

Query: 299 IPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEF-QAVYRALK 351
           +P      V EL   +K  F+ +   ++E+G  Q   R+ E+D F + V+ A++
Sbjct: 266 LP-----GVGELLETYKDKFVIICVNIFEYGLKQQEKRKTELDTFSECVHEAIQ 314

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332848371|ref|XP_003315634.1| PREDICTED: leucine-rich repeat-containing protein 48 isoform 1 [Pan troglodytes] gi|397474773|ref|XP_003808835.1| PREDICTED: leucine-rich repeat-containing protein 48 isoform 1 [Pan paniscus] gi|397474775|ref|XP_003808836.1| PREDICTED: leucine-rich repeat-containing protein 48 isoform 2 [Pan paniscus]

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 169/294 (57%), Gaps = 10/294 (3%)

Query: 60  QESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVC 118
           +E+  LA++  I +K + ++ L  + + +I+NLW  ENL +L L  N I  IE L+ L  
Sbjct: 29  EEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFENLRKLQLDNNIIEKIEGLENLAH 88

Query: 119 LEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLAS 178
           L  LDL +N IE I+GLDTLVNL+ L+L  NRI  I+ LD L KL++ ++  NRI ++ +
Sbjct: 89  LVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNRIDNMMN 148

Query: 179 LVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYD 238
           ++YLRRFK L  L++ RNP+ + E+   F  A +P L   +   I +  ++ A  +H Y 
Sbjct: 149 IIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLVYLDYRRIDDHTKKLAEAKHQYS 208

Query: 239 VRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCT 298
           +     ++ ++Q + ++  A + + E+   AFVE+L G FLF+  +  D EG    KL  
Sbjct: 209 IDELKHRENLMQAQLEDEQARREELEKHKTAFVEHLNGSFLFDSMYAEDSEGN---KLSY 265

Query: 299 IPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEF-QAVYRALK 351
           +P      V EL   +K  F+ +   ++E+G  Q   R+ E+D F + V+ A++
Sbjct: 266 LP-----GVGELLETYKDKFVIICVNIFEYGLKQQEKRKTELDTFSECVHEAIQ 314

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426349214|ref|XP_004042208.1| PREDICTED: leucine-rich repeat-containing protein 48 isoform 1 [Gorilla gorilla gorilla] gi|426349216|ref|XP_004042209.1| PREDICTED: leucine-rich repeat-containing protein 48 isoform 2 [Gorilla gorilla gorilla]

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 168/294 (57%), Gaps = 10/294 (3%)

Query: 60  QESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVC 118
           +E+  LA++  I +K + ++ L  + + +I+NLW  ENL +L L  N I  IE L+ L  
Sbjct: 29  EEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFENLRKLQLDNNIIEKIEGLENLAH 88

Query: 119 LEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLAS 178
           L  LDL +N IE I+GLDTLVNL+ L+L  NRI  I+ LD L KL++ ++  NRI ++ +
Sbjct: 89  LVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNRIDNMMN 148

Query: 179 LVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYD 238
           ++YLRRFK L  L++ RNP+ + E+   F  A +P L   +   I +  +  A  +H Y 
Sbjct: 149 IIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLVYLDYRRIDDHTKELAEAKHQYS 208

Query: 239 VRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCT 298
           +     ++ ++Q + ++  A + + E+   AFVE+L G FLF+  +  D EG    KL  
Sbjct: 209 IDELKHRENLMQAQLEDEQARREELEKHKTAFVEHLNGSFLFDSMYAEDSEGN---KLSY 265

Query: 299 IPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEF-QAVYRALK 351
           +P      V EL   +K  F+ +   ++E+G  Q   R+ E+D F + V+ A++
Sbjct: 266 LP-----GVGELLETYKDKFVIICVNIFEYGLKQQEKRKTELDTFSECVHEAIQ 314

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426349218|ref|XP_004042210.1| PREDICTED: leucine-rich repeat-containing protein 48 isoform 3 [Gorilla gorilla gorilla]

 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 168/294 (57%), Gaps = 10/294 (3%)

Query: 60  QESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVC 118
           +E+  LA++  I +K + ++ L  + + +I+NLW  ENL +L L  N I  IE L+ L  
Sbjct: 29  EEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFENLRKLQLDNNIIEKIEGLENLAH 88

Query: 119 LEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLAS 178
           L  LDL +N IE I+GLDTLVNL+ L+L  NRI  I+ LD L KL++ ++  NRI ++ +
Sbjct: 89  LVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNRIDNMMN 148

Query: 179 LVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYD 238
           ++YLRRFK L  L++ RNP+ + E+   F  A +P L   +   I +  +  A  +H Y 
Sbjct: 149 IIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLVYLDYRRIDDHTKELAEAKHQYS 208

Query: 239 VRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCT 298
           +     ++ ++Q + ++  A + + E+   AFVE+L G FLF+  +  D EG    KL  
Sbjct: 209 IDELKHRENLMQAQLEDEQARREELEKHKTAFVEHLNGSFLFDSMYAEDSEGN---KLSY 265

Query: 299 IPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEF-QAVYRALK 351
           +P      V EL   +K  F+ +   ++E+G  Q   R+ E+D F + V+ A++
Sbjct: 266 LP-----GVGELLETYKDKFVIICVNIFEYGLKQQEKRKTELDTFSECVHEAIQ 314

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|117644234|emb|CAL37611.1| hypothetical protein [synthetic construct]

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/290 (34%), Positives = 163/290 (56%), Gaps = 9/290 (3%)

Query: 60  QESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVC 118
           +E+  LA++  I +K + ++ L  + + +I+NLW  ENL +L L  N I  IE L+ L  
Sbjct: 29  EEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFENLRKLQLDNNIIEKIEGLENLAH 88

Query: 119 LEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLAS 178
           L  LDL +N IE I+GLDTLVNL+ L+L  NRI  I+ LD L KL++ ++  NRI ++ +
Sbjct: 89  LVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNRIDNMMN 148

Query: 179 LVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYD 238
           ++YLRRFK L  L++ RNP+ + E+   F  A +P L   +   I +  ++ A  +H Y 
Sbjct: 149 IIYLRRFKCLWTLSLSRNPISEAEDYKMFICAYLPDLMYLDYWRIDDHTKKLAEAKHQYS 208

Query: 239 VRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCT 298
           +     ++ ++Q + ++  A + + E+   AFVE+L G FLF+  +  D EG     L  
Sbjct: 209 IDELKHQENLMQAQLEDEQAQREELEKHKTAFVEHLNGSFLFDSMYAEDSEGN---NLSY 265

Query: 299 IPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYR 348
           +P      V EL   +K  F+ +   ++E+G  Q   R+ E+D F    R
Sbjct: 266 LP-----GVGELLETYKDKFVIICVNIFEYGLKQQEKRKTELDTFSECVR 310

Source: synthetic construct

Species: synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
UNIPROTKB|E2RI69	522	LRRC48 "Uncharacterized protei	0.726	0.580	0.326	7.8e-39
RGD|1309150	523	Lrrc48 "leucine rich repeat co	0.726	0.579	0.328	2.6e-38
UNIPROTKB|Q9H069	523	LRRC48 "Leucine-rich repeat-co	0.719	0.573	0.316	5.5e-38
MGI|MGI:1921915	523	Lrrc48 "leucine rich repeat co	0.724	0.577	0.322	1.1e-37
UNIPROTKB|F1N0Q0	522	LRRC48 "Uncharacterized protei	0.724	0.578	0.327	3e-37
UNIPROTKB|E1BVG6	525	LRRC48 "Uncharacterized protei	0.836	0.664	0.297	3.9e-37
ZFIN|ZDB-GENE-061103-349	513	lrrc48 "leucine rich repeat co	0.685	0.557	0.316	1.9e-35
FB|FBgn0046697	569	Ppr-Y "Ppr-Y" [Drosophila mela	0.705	0.516	0.268	2.4e-28
FB|FBgn0032163	566	TbCMF46 "TbCMF46" [Drosophila	0.769	0.567	0.276	2.8e-28
FB|FBgn0028992	326	sds22 "sds22" [Drosophila mela	0.705	0.901	0.278	3.1e-16

UNIPROTKB|E2RI69 LRRC48 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 104/319 (32%), Positives = 172/319 (53%)

Query:    37 PAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMME 95
             P +++ED+L  K  + E      +E+  LA +  I +K + ++ L  + + +I++LW  E
Sbjct:    10 PRVMDEDML--KLAVGEQ--GPREEAGQLARQEGILFKDVLSLRLDFQNILRIDSLWEFE 65

Query:    96 NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIE 155
             NL +L L  N I  IE L+QLV L  LDL +N IE I+GLDT           NRI  I+
Sbjct:    66 NLTKLQLDNNIIEKIEGLEQLVHLVWLDLSFNNIEAIEGLDTLVNLEDLSLFNNRISKID 125

Query:   156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
              LD L KL++ ++  N+I ++ +++YLRRFK L  L++  NP+ + E+   F  A +P L
Sbjct:   126 SLDALVKLQVLSLGNNQIGNMMNIIYLRRFKDLRTLSLSGNPIAESEDYKMFVCAYLPDL 185

Query:   216 QCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLE 275
                + H I +  +  A  +H Y +     ++ ++Q   ++  A Q + E+   AFVE+L 
Sbjct:   186 VYLDFHRIDDHMKEMAESKHQYSIDELKHRENLIQSRLEDEQAQQEELEKHKAAFVEHLN 245

Query:   276 GDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYN--NFKRDFLEVSSKLYEFGTSQH 333
             G FLF+  +  DVEG    KL  +P      ++EL     +K  F+ +   ++E+G  Q 
Sbjct:   246 GSFLFDSMYTEDVEGN---KLAYLP-----GISELLQPLTYKDKFVIICLNIFEYGLKQQ 297

Query:   334 SLRQNEVDEF-QAVYRALK 351
               R+ E+D F + V  A++
Sbjct:   298 EKRKLELDTFNECVQEAIQ 316

GO:0005737 "cytoplasm" evidence=IEA

RGD|1309150 Lrrc48 "leucine rich repeat containing 48" [Rattus norvegicus (taxid:10116)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 104/317 (32%), Positives = 168/317 (52%)

Query:    37 PAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMME 95
             P ++++D+L  K  + E      +E+  LA++  I +K + A+ L  + + +I+NLW  E
Sbjct:    10 PKVMDDDML--KVAVGEQ--GPQEEAGQLAKQEGILFKDVLALQLDFQNILRIDNLWQFE 65

Query:    96 NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIE 155
             NL +L L+ N I  IE L+ L  L  LDL +N IE I+GLDT           NRI  I+
Sbjct:    66 NLRKLQLNNNIIERIEGLENLTHLVWLDLSFNNIEAIEGLDTLVNLEDLSLSHNRISKID 125

Query:   156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
              LD L  L++ ++  N+I ++ +++YLRRF  L  L++  NPV + E    F  A +P L
Sbjct:   126 SLDPLVNLQVLSLGNNQINNMMNIIYLRRFPCLRTLSLSGNPVSEAEEYKVFIYAYLPDL 185

Query:   216 QCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLE 275
                +   + E  R  A  +H Y +     ++ ++Q   +   A Q+K  E   AFVE+L 
Sbjct:   186 VYLDFRRVDEQAREVAKMKHQYSIDELKHREALMQIRLEEEQAKQQKLAEHKMAFVEHLN 245

Query:   276 GDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSL 335
             G FLF+  + +DVEG    KL  +P      V EL   +K  F+ +   ++E+G SQ   
Sbjct:   246 GPFLFDSMYSDDVEGN---KLSYLP-----GVGELLEAYKDKFVIICLNIFEYGLSQQEK 297

Query:   336 RQNEVDEF-QAVYRALK 351
             R+ E+D F + +  A++
Sbjct:   298 RKIELDTFNECIQEAIQ 314

GO:0005737 "cytoplasm" evidence=IEA;ISO

UNIPROTKB|Q9H069 LRRC48 "Leucine-rich repeat-containing protein 48" [Homo sapiens (taxid:9606)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 99/313 (31%), Positives = 166/313 (53%)

Query:    37 PAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMME 95
             P ++++D+L  K  + +      +E+  LA++  I +K + ++ L  + + +I+NLW  E
Sbjct:    10 PRVMDDDML--KLAVGDQ--GPQEEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFE 65

Query:    96 NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIE 155
             NL +L L  N I  IE L+ L  L  LDL +N IE I+GLDT           NRI  I+
Sbjct:    66 NLRKLQLDNNIIEKIEGLENLAHLVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKID 125

Query:   156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
              LD L KL++ ++  NRI ++ +++YLRRFK L  L++ RNP+ + E+   F  A +P L
Sbjct:   126 SLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDL 185

Query:   216 QCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLE 275
                +   I +  ++ A  +H Y +     ++ ++Q + ++  A + + E+   AFVE+L 
Sbjct:   186 MYLDYRRIDDHTKKLAEAKHQYSIDELKHQENLMQAQLEDEQAQREELEKHKTAFVEHLN 245

Query:   276 GDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSL 335
             G FLF+  +  D EG     L  +P      V EL   +K  F+ +   ++E+G  Q   
Sbjct:   246 GSFLFDSMYAEDSEGNN---LSYLP-----GVGELLETYKDKFVIICVNIFEYGLKQQEK 297

Query:   336 RQNEVDEFQAVYR 348
             R+ E+D F    R
Sbjct:   298 RKTELDTFSECVR 310

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1921915 Lrrc48 "leucine rich repeat containing 48" [Mus musculus (taxid:10090)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 102/316 (32%), Positives = 166/316 (52%)

Query:    37 PAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMME 95
             P ++++D+L  K  + E      +E+  LA++  I +K + ++ L  + + +I+NLW  E
Sbjct:    10 PKVMDDDML--KAAVGEQ--GPQEEAGQLAKQEGILFKDVLSLQLDFQNILRIDNLWQFE 65

Query:    96 NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIE 155
             NL +L L+ N I  IE L  L+ L  LDL +N IE I+GLDT           NRI  ++
Sbjct:    66 NLKKLQLNNNIIERIEGLTNLIHLVWLDLSFNNIEAIEGLDTLVNLEDLSLSNNRISKVD 125

Query:   156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
              LD L KL++ ++  N+I ++ +++YLRRF  L  L++  NPV + E    F  A +  L
Sbjct:   126 SLDALVKLQVLSLGNNQISNMMNIIYLRRFPCLRTLSLAGNPVSEAEEYKMFIYAYLSDL 185

Query:   216 QCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLE 275
                +   + E  R  A  +H Y +     ++  +Q + +   A Q K EE   AFVE+L 
Sbjct:   186 VYLDFRRVDEQMREMAKMKHQYSIDELKHREAQLQMKLEEEQAKQEKLEEHKMAFVEHLN 245

Query:   276 GDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSL 335
             G FLF+  +  DVEG    KL  +P      V EL   +K  F+ +   ++E+G +Q   
Sbjct:   246 GPFLFDSMYSEDVEGN---KLSYLP-----GVRELLEAYKDKFVIICLNIFEYGLNQQEK 297

Query:   336 RQNEVDEF-QAVYRAL 350
             R+ E+D F + +  A+
Sbjct:   298 RKVELDTFNECIQEAI 313

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1N0Q0 LRRC48 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 104/318 (32%), Positives = 169/318 (53%)

Query:    37 PAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIENLWMME 95
             P ++++D+L  K  + E      +E+  LA++  I +K + ++ L  + + +I+NLW  E
Sbjct:     9 PRVMDDDML--KLAVGEQ--GPREEAGQLAKQEGILFKDVVSLQLDFQNILRIDNLWQFE 64

Query:    96 NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIE 155
             +L +L L  N I  IE L+ L  L  LDL +N IE I+GLDT           NRI  I+
Sbjct:    65 SLQKLQLDNNIIEKIEGLENLTRLVWLDLSFNNIEAIEGLDTLVNLEDLSLFNNRISKID 124

Query:   156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
              LD L KL++ ++  N I ++ +++YLRRFK L  L++  NPV + E+   F  A +P L
Sbjct:   125 SLDALVKLQVLSLGNNHIGNMMNIIYLRRFKALRTLSLSGNPVAEDEDYKMFICAYLPDL 184

Query:   216 QCYNNHIILEDERRTALE-QHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENL 274
               Y +   L+D  +   E +H Y +     ++ ++Q   ++  A + + EE   AFVE L
Sbjct:   185 -VYLDFRRLDDHMKELAEMKHQYSIDELKHRENLMQARLEDEQARREELEEHKAAFVEQL 243

Query:   275 EGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHS 334
              G FLF+  +  DVEG    KL  +P      V EL   +K  F+ +   ++E+G  Q  
Sbjct:   244 NGTFLFDSMYAEDVEGS---KLSHLP-----GVGELLEAYKDKFVIICLNIFEYGLKQQE 295

Query:   335 LRQNEVDEF-QAVYRALK 351
              R+ E+D F + V  A++
Sbjct:   296 KRKAELDTFMECVQEAIQ 313

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E1BVG6 LRRC48 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 112/376 (29%), Positives = 188/376 (50%)

Query:    37 PAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMEN 96
             P +I++++L K   + E     +++    AE +  +K +  + L  + + +I+NLW  EN
Sbjct:    10 PNVIDDEMLQK--AVEEQWPEDIRKLAK-AEGIN-FKDVMELQLSFRNILQIDNLWQFEN 65

Query:    97 LVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEG 156
             L +L L  N I  IE L+ LV L  LDL +N IE I+GLDT           NRI  IE 
Sbjct:    66 LTKLQLDNNIIEKIEALESLVHLVWLDLSFNNIEVIEGLDTLVKLQDLSLYNNRISKIEH 125

Query:   157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQ 216
             +D L++L++F+I  N + +L ++VYLR+FK+L  LN+  NP C++E    F +A +P L 
Sbjct:   126 MDTLQELQIFSIGKNNLTTLENVVYLRKFKNLHTLNLTGNPFCNEEQYMLFVVAHLPGLV 185

Query:   217 CYNNHIILEDERRTALEQHMY--DVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENL 274
               +  ++ +  R  A+  + Y  D+        + Q E + A   Q++ E    AFVE L
Sbjct:   186 YLDFKLVSDTTREVAISNYHYLTDLLEHEEAQALAQLEEKQA--QQKELEYHKTAFVEYL 243

Query:   275 EGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHS 334
              G FLF+  +  D E     KL  +P      V +L   + +DF+ V   L+ +   +H 
Sbjct:   244 NGSFLFDSLYAEDTEAA---KLAYLP-----GVDDLLQAYPKDFVSVCENLFNYCLKEHE 295

Query:   335 LRQNEVDEFQAVYRALKLKSCHEA------VKNKTRYRVHPMLYEILSNEEALDDALMNS 388
              R+ EV +F    R +   +  E        +N+ R R+   ++   S++ A  +++   
Sbjct:   296 KREAEVSDFYEGLREVLTANQEEGRRIILDFENQNRTRLDE-IHHASSHDTA--ESMRAE 352

Query:   389 FGETMDVLYAQEDAIT 404
             + E  D+L   E  +T
Sbjct:   353 YNE--DILQLSETLMT 366

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-061103-349 lrrc48 "leucine rich repeat containing 48" [Danio rerio (taxid:7955)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 94/297 (31%), Positives = 155/297 (52%)

Query:    49 GVISENLL--SLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNH 106
             GVI E +L  ++ ++ T   E +Q+ ++++ + L  + + KI +LW   +L +L L  N 
Sbjct:     9 GVIDEQMLQRAVEEQQTRYTEGIQLEEVLE-LRLDYRNILKIYHLWSFSSLTKLQLDNNA 67

Query:   107 IGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLELF 166
             I  IE L+ L  L  LDL +N+IE I+GL T           NRI  IE LD L++L++ 
Sbjct:    68 IERIEGLENLTNLTWLDLSFNKIEVIEGLQTLVKLQDLSLFNNRISVIENLDTLQRLQVL 127

Query:   167 NIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILED 226
             ++  N I  L +++YLRRF+ L  LN+  NP+C+++    F  A +P+L   +  ++ E 
Sbjct:   128 SLGNNSIAQLENVIYLRRFQSLRTLNLAGNPICEEDRYKTFVSAYLPELVYLDYRLLDEQ 187

Query:   227 ERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFEN 286
              R TA  ++ Y +      ++  Q+  +    S  + +    AFVENL G  LF+  F +
Sbjct:   188 TRETANAKYQYAIEEMRQNEMQEQQAMEAQKISNEELQLHKDAFVENLNGAQLFHSMFAD 247

Query:   287 DVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEF 343
             D + +   KL  +P      V  L   F+     V  +++E G SQ+S R  EV+ F
Sbjct:   248 DPDAE---KLALLP-----GVDALLEEFRSRMEAVCMQMFEAGLSQYSRRSAEVESF 296

GO:0008150 "biological_process" evidence=ND

FB|FBgn0046697 Ppr-Y "Ppr-Y" [Drosophila melanogaster (taxid:7227)]

 Score = 302 (111.4 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
 Identities = 85/317 (26%), Positives = 164/317 (51%)

Query:    39 IINEDLLSKKGVISENLL-SLLQESTNLAEKLQIYKLIKAVNLRIKTLR-------KIEN 90
             +I  D+  + G+I+ +L+ S   +  +  E  ++++L   V  +I T+R       +I++
Sbjct:    19 VIYPDI--EPGIINRSLIESSYLKHVHRGEGRRLHQLEPVVLEQILTMRLEFNNILRIDH 76

Query:    91 LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNR 150
             LW++ NL +L L+ N I  IEN++ L  L+ L+L +N IE+I+ LDT           N+
Sbjct:    77 LWILPNLTKLCLNCNKIETIENIEMLTNLKDLNLSFNFIEKIENLDTLVNLEVLSLFSNK 136

Query:   151 IETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN--VDGFA 208
             IE IE +D L  L + ++  N I ++  +   R   +L  +N+E NP+  + N  +  + 
Sbjct:   137 IEAIENIDMLTMLVIISLGNNLIDTVEGIERFRFMNNLKIINLEGNPIAKRTNFCLLKYI 196

Query:   209 IAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEK-- 266
              A++P+L  Y    I  + R  A   +  ++R   ++D   +  +      + +SE K  
Sbjct:   197 SAILPKLNYYEYTFIKSELRAEACNLYYREIRE--IEDKQEKEIQARKFLEREQSEAKRL 254

Query:   267 SKAFVENLEGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLY 326
             + +FVE+L+G  LF+  +  D +G+ +L L      +G    EL + + +D  E++ ++Y
Sbjct:   255 ASSFVEHLDGHQLFDSLWRGDEDGR-VLML------VGTQAQELADEYDKDIFELTQEIY 307

Query:   327 EFGTSQHSLRQNEVDEF 343
             + G  + + R  E+ +F
Sbjct:   308 KLGLERFTERDEEIRDF 324

GO:0006470 "protein dephosphorylation" evidence=NAS

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=NAS

FB|FBgn0032163 TbCMF46 "TbCMF46" [Drosophila melanogaster (taxid:7227)]

 Score = 321 (118.1 bits), Expect = 2.8e-28, P = 2.8e-28
 Identities = 95/343 (27%), Positives = 171/343 (49%)

Query:    71 IYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIE 130
             +Y  I  + L  K + +I++LWMM NL +L L+ N I VIE+L+ L  L+ L+L +N I 
Sbjct:    65 VYDRITTMRLEFKNILRIDHLWMMPNLTKLCLNCNKIEVIEHLEMLTALKDLNLSFNYIT 124

Query:   131 QIQGLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGR 190
             +I+ L+            NRI  IE +  L+ L + +I  N I ++  +  LR    L  
Sbjct:   125 RIENLEKLVKLEKLSLFSNRIRKIENIHTLQNLVILSIGNNLIDTVEGIERLRFVSSLKV 184

Query:   191 LNIERNPVCDKEN--VDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLM 248
             LN+E NP+  + +  +  + IA++PQL  Y  ++ ++ E R   ++  Y    E ++D  
Sbjct:   185 LNLEGNPIAKQPDFPLSLYVIAILPQLNYYE-YVFIKTETREEAQKRFYRELRE-IEDKQ 242

Query:   249 VQRERQNALASQRKSEEKSK---AFVENLEGDFLFNVQFENDVEGQEMLKLCTIPTKLGR 305
              +RE Q      R+  E  +   +FVE+L+G  L++  + +D +G+ +L L   P +   
Sbjct:   243 -EREIQGLETEAREMAEADRLASSFVEHLDGMQLYDSLWRDDEDGR-ILMLVGAPAQ--- 297

Query:   306 SVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRALKLKSCHEAVKNKTRY 365
                EL   + +D  E++ ++Y  G  +   R  E+ +F A      L    E ++ + + 
Sbjct:   298 ---ELCEEYSKDVYELTQQIYRLGLERFGERDEEIRDFNA-----NLHEGQEELQAQGQR 349

Query:   366 RVHPML-Y-EILSNEEALDDALMNSFGETMDVLYAQEDAITDN 406
             ++   L Y E + +E  L    ++   + ++ L AQ D +T N
Sbjct:   350 QIEDFLEYKERIFDEMRLKWRELDQRDDDLEQLQAQLDTLTAN 392

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=ISS

GO:0000164 "protein phosphatase type 1 complex" evidence=ISS

GO:0005929 "cilium" evidence=IDA

FB|FBgn0028992 sds22 "sds22" [Drosophila melanogaster (taxid:7227)]

 Score = 220 (82.5 bits), Expect = 3.1e-16, P = 3.1e-16
 Identities = 88/316 (27%), Positives = 147/316 (46%)

Query:    18 DRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENL----LSLLQESTNLAEKLQIYK 73
             DRA +E         +Q  PA   ED+ S + +I+ +     L L        E  +   
Sbjct:     5 DRAMNEPEAAKTVSGIQVIPA---EDVASIEDIITIDPDCYELDLNHRRIEKLENFEPLT 61

Query:    74 LIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ 133
              I+ + LR   ++KIENL  ++ L+EL+L  N I  IENLD L  LE LD+ +NR+ +I+
Sbjct:    62 RIERLFLRWNLIKKIENLSSLKTLIELELYDNQITKIENLDDLPHLEVLDISFNRLTKIE 121

Query:   134 GLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI 193
              LD            NRI  IE LD L  L +  +  N+++ + ++  L    +L +L +
Sbjct:   122 NLDKLVKLEKVYFVSNRITQIENLDMLTNLTMLELGDNKLKKIENIEML---VNLRQLFL 178

Query:   194 ERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMY--DVRTETLKDLMVQR 251
              +N +   EN+D      +  LQ  N  + +E   + A  + +Y  +   ET+++L  + 
Sbjct:   179 GKNKIAKIENLDTLVNLEILSLQA-NRIVKIETLEKLANLRELYVSENGVETIENLS-EN 236

Query:   252 ERQNALASQRKSEEKSKAFVENLE--GDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAE 309
              +   L    K+  K  A +E LE   +   N    +D +  E+LK+     K  +++  
Sbjct:   237 TKLETL-DLAKNRLKGIANLEKLELLEELWLNHNGVDDWKDIELLKV----NKALQTIYL 291

Query:   310 LYNNFKRDFLEVSSKL 325
              YN   +D +   SKL
Sbjct:   292 EYNPLAKD-VRYRSKL 306

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=ISS

GO:0016336 "establishment or maintenance of polarity of larval imaginal disc epithelium" evidence=IMP

GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0000164 "protein phosphatase type 1 complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	417
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	2e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 42.9 bits (102), Expect = 5e-06
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 119 LEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDH 159
           LE LDL  N+I  +  L  L NL+ L+L  N+I  +  L +
Sbjct: 3   LETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 119 LEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETI--EGLDHLEKLELFNIAANRI 173
           L+ LDL  NR+  I       L NLKVL+L  N + +I  E    L  L   +++ N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 18/40 (45%), Positives = 21/40 (52%)

Query: 96  NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL 135
           NL  LDLS N I  +  L  L  LE LDL  N+I  +  L
Sbjct: 2   NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPL 41

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 140 NLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASL 179
           NL+ L+L  N+I  +  L +L  LE  +++ N+I  L+ L
Sbjct: 2   NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPL 41

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNRI 151
           NL  LDLS N + VI +     L  L+ LDL  N +  I  +    L +L+ L+L  N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	417
KOG4194|consensus	873		99.92
KOG4194|consensus	873		99.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.84
KOG0444|consensus	1255		99.68
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.64
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.6
KOG4237|consensus	498		99.6
KOG0472|consensus	565		99.6
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.6
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.59
KOG0472|consensus	565		99.58
KOG1259|consensus	490		99.57
KOG0444|consensus	1255		99.57
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.55
KOG0617|consensus	264		99.53
KOG4237|consensus	498		99.5
KOG0618|consensus	1081		99.49
KOG0617|consensus	264		99.46
KOG3207|consensus	505		99.45
KOG1644|consensus	233		99.41
KOG0618|consensus	1081		99.4
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.39
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.32
KOG1259|consensus	490		99.25
KOG1859|consensus	1096		99.19
KOG3207|consensus	505		99.12
KOG0531|consensus	414		99.12
KOG2982|consensus	418		99.11
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.08
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
KOG0531|consensus	414		98.99
KOG2123|consensus	388		98.98
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.94
KOG0532|consensus	722		98.87
KOG0532|consensus	722		98.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.72
KOG2739|consensus	260		98.66
KOG1644|consensus	233		98.62
KOG1859|consensus	1096		98.61
KOG1909|consensus	382		98.51
KOG1909|consensus	382		98.45
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
PLN03150	623	hypothetical protein; Provisional	98.25
KOG4579|consensus	177		98.22
PLN03150	623	hypothetical protein; Provisional	98.13
KOG2982|consensus	418		98.11
KOG2123|consensus	388		98.06
KOG4579|consensus	177		98.03
KOG4658|consensus	889		97.99
KOG3665|consensus	699		97.96
KOG3665|consensus	699		97.87
KOG2739|consensus	260		97.72
KOG4658|consensus	889		97.68
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.66
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.54
PRK15386	426	type III secretion protein GogB; Provisional	97.44
KOG2120|consensus	419		97.42
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.38
PRK15386	426	type III secretion protein GogB; Provisional	97.32
KOG2120|consensus	419		97.22
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.16
KOG3763|consensus	585		96.11
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.67
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.63
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.28
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.29
KOG0473|consensus	326		91.15
KOG0473|consensus	326		90.97
KOG4308|consensus	478		90.87
KOG1947|consensus	482		90.81
KOG4308|consensus	478		88.79
smart00370	26	LRR Leucine-rich repeats, outliers.	88.05
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.05
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.49
KOG1947|consensus	482		86.22
KOG3763|consensus	585		86.0
smart00370	26	LRR Leucine-rich repeats, outliers.	85.67
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.67
KOG3864|consensus	221		85.09
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.84
KOG3864|consensus	221		83.75
KOG4341|consensus	483		80.94

>KOG4194|consensus

Probab=99.92  E-value=2.3e-26  Score=227.66  Aligned_cols=318  Identities=21%  Similarity=0.195  Sum_probs=216.2

Q ss_pred             ccccccccCCcchhhhh----cccccEEEeecCCCCCCCCcCCCcc-cceEeeeCCCCCCcCC--CCCCccCceeeeeCC
Q psy13376         55 LLSLLQESTNLAEKLQI----YKLIKAVNLRIKTLRKIENLWMMEN-LVELDLSMNHIGVIEN--LDQLVCLEKLDLGYN  127 (417)
Q Consensus        55 ~~~l~~~~n~i~~l~~l----l~~L~~L~Ls~N~i~~i~~l~~l~~-L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N  127 (417)
                      ..+|++++|++..+...    +++|+.+++.+|.++.+|.++.... |+.|+|.+|.|+++.+  +..++.|+.||||.|
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            34567777777766544    7778888888888888877665544 8888888888887753  777788888888888


Q ss_pred             CCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        128 RIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       128 ~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      .|++++.  |..-+++++|+|++|.|+.+.  .|.++.+|..|.|++|+|+.+|. ..|+++++|+.|+|..|.|.....
T Consensus       160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH-HHhhhcchhhhhhccccceeeehh
Confidence            8887774  666677888888888888774  57777788888888888888776 466778888888888887766543


Q ss_pred             ccHHHHhcCCCcccccCcccCHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhhhccCCCchhhhh
Q psy13376        204 VDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQ  283 (417)
Q Consensus       204 ~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~l~~~~  283 (417)
                         ..+..+++|+.|.+.++.   +....+..|..+.+++.+++..|+.....+.-...+..++..++++.....+.-.-
T Consensus       239 ---ltFqgL~Sl~nlklqrN~---I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~  312 (873)
T KOG4194|consen  239 ---LTFQGLPSLQNLKLQRND---ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS  312 (873)
T ss_pred             ---hhhcCchhhhhhhhhhcC---cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence               356677777777666655   44445556666777777777777776665555556666666666655422221111


Q ss_pred             hccChhhhhhhhhccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q psy13376        284 FENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRALKLKSCHEAVKNKT  363 (417)
Q Consensus       284 ~~~~~~~~~l~~l~~l~~l~~~~~~~li~~~~~~~f~~~~~L~~L~Ls~N~l~~l~~~~F~~~~~~~~~~~~~~~~~~~~  363 (417)
                      |.-.+....|.           +..|.|++++++.|..+++|++|+|++|+|..+.+++|...--..+.+...+..-|..
T Consensus       313 WsftqkL~~Ld-----------Ls~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  313 WSFTQKLKELD-----------LSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             hhhcccceeEe-----------ccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence            11111111222           3467788888888998999999999999999999999888776666666665555555


Q ss_pred             H-----hhchhhHHHhhhccccchHHHHHhhh
Q psy13376        364 R-----YRVHPMLYEILSNEEALDDALMNSFG  390 (417)
Q Consensus       364 ~-----~~~~~~l~~~~~~~~~l~~~~~~~~~  390 (417)
                      +     |...+.|+.+-...+.||...-++|.
T Consensus       382 EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfs  413 (873)
T KOG4194|consen  382 EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFS  413 (873)
T ss_pred             ecchhhhccchhhhheeecCceeeecchhhhc
Confidence            4     77777776442233444444444443

>KOG4194|consensus

Probab=99.91  E-value=2.5e-26  Score=227.39  Aligned_cols=299  Identities=18%  Similarity=0.177  Sum_probs=246.9

Q ss_pred             ccccccCCcchh-----hhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCCCCCCc-cCceeeeeCC
Q psy13376         57 SLLQESTNLAEK-----LQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIENLDQLV-CLEKLDLGYN  127 (417)
Q Consensus        57 ~l~~~~n~i~~l-----~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~-~L~~L~Ls~N  127 (417)
                      .++.+.+.+..+     .+. .+..+.|++++|.+..+..  |.++++|+++++..|.++.+|.++... +|+.|+|.+|
T Consensus        56 lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N  135 (873)
T KOG4194|consen   56 LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN  135 (873)
T ss_pred             eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc
Confidence            345666777665     444 6677889999999999865  889999999999999999999877665 6999999999


Q ss_pred             CCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        128 RIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       128 ~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      .|+++.+  ++.++.|+.||||.|.|+.++  .|..-.++++|+|++|.|+++.. ..|..+.+|..|.|+.|+++.+|.
T Consensus       136 ~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittLp~  214 (873)
T KOG4194|consen  136 LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTLPQ  214 (873)
T ss_pred             ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccc-ccccccchheeeecccCcccccCH
Confidence            9999985  999999999999999999996  57777899999999999999876 678899999999999999999997


Q ss_pred             ccHHHHhcCCCcccccCcccCHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhhhccCCCchhhh-
Q psy13376        204 VDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNV-  282 (417)
Q Consensus       204 ~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~l~~~-  282 (417)
                         +++.++|+|+.||+.++.   ++..+...|.++..++.+.++.|.+...+...+..+.++....+++.....+-++ 
T Consensus       215 ---r~Fk~L~~L~~LdLnrN~---irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~  288 (873)
T KOG4194|consen  215 ---RSFKRLPKLESLDLNRNR---IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW  288 (873)
T ss_pred             ---HHhhhcchhhhhhccccc---eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence               788899999999998887   4455677889999999998888888766666666666666666665543333222 


Q ss_pred             hhccChhhhhhhhhccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy13376        283 QFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRALKLKSCHEAVKNK  362 (417)
Q Consensus       283 ~~~~~~~~~~l~~l~~l~~l~~~~~~~li~~~~~~~f~~~~~L~~L~Ls~N~l~~l~~~~F~~~~~~~~~~~~~~~~~~~  362 (417)
                      +|.+. ....|.           ...|.|++|+.+.++.|++|++||||+|+|.+++++.|...-+.-.....++++.-+
T Consensus       289 lfgLt-~L~~L~-----------lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l  356 (873)
T KOG4194|consen  289 LFGLT-SLEQLD-----------LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL  356 (873)
T ss_pred             ccccc-hhhhhc-----------cchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence            33222 222222           346779999999999999999999999999999999999999888888888888887


Q ss_pred             HH--hhchhhHHHh
Q psy13376        363 TR--YRVHPMLYEI  374 (417)
Q Consensus       363 ~~--~~~~~~l~~~  374 (417)
                      .+  |....+|.++
T Consensus       357 ~e~af~~lssL~~L  370 (873)
T KOG4194|consen  357 AEGAFVGLSSLHKL  370 (873)
T ss_pred             HhhHHHHhhhhhhh
Confidence            76  7788888766

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.84  E-value=3.4e-22  Score=176.66  Aligned_cols=161  Identities=35%  Similarity=0.488  Sum_probs=74.0

Q ss_pred             EeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCC-CCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcC-C
Q psy13376         79 NLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLD-QLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIE-G  156 (417)
Q Consensus        79 ~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~-~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~-~  156 (417)
                      .+..+.|..++.+.+..++++|+|++|.|+.++.++ .+.+|+.|++++|.|+.++++..++.|++|++++|+|++++ .
T Consensus         3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~   82 (175)
T PF14580_consen    3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEG   82 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccc
Confidence            456677888888888888999999999999998887 68899999999999999999999999999999999999996 3


Q ss_pred             C-CCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHHHHHHHHHHH
Q psy13376        157 L-DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQH  235 (417)
Q Consensus       157 l-~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~  235 (417)
                      + ..+++|+.|++++|+|.++..+..++.+++|+.|++.+||++..+.|+.+++..+|+|+.||...++..|+..|..+|
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~~f  162 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEERQEAEKLF  162 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B--------
T ss_pred             hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHHhccccccc
Confidence            4 468999999999999999988888999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhh
Q psy13376        236 MYDV  239 (417)
Q Consensus       236 ~~~l  239 (417)
                      .+..
T Consensus       163 ~~~~  166 (175)
T PF14580_consen  163 KGKR  166 (175)
T ss_dssp             ----
T ss_pred             cccc
Confidence            7643

>KOG0444|consensus

Probab=99.68  E-value=2e-18  Score=172.72  Aligned_cols=262  Identities=17%  Similarity=0.161  Sum_probs=147.3

Q ss_pred             ccccCCcchhhhh---cccccEEEeecCCCCC--CCC-cCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCc
Q psy13376         59 LQESTNLAEKLQI---YKLIKAVNLRIKTLRK--IEN-LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQ  131 (417)
Q Consensus        59 ~~~~n~i~~l~~l---l~~L~~L~Ls~N~i~~--i~~-l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~  131 (417)
                      ..+.|++.++.+-   ++.|+.+.+.+|++..  +|. +..+..|+.||||+|+++.+|. +..-.++-+|+||+|+|.+
T Consensus        61 s~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet  140 (1255)
T KOG0444|consen   61 SMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET  140 (1255)
T ss_pred             hhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc
Confidence            3445555554443   4444444555554432  222 4444455555555555554442 4444444455555555555


Q ss_pred             ccC--CccccccceeEeecCCCCCcC-CCCC------------------------CCCCcEEeccCCccC--cchhhhhh
Q psy13376        132 IQG--LDTLVNLKVLNLKMNRIETIE-GLDH------------------------LEKLELFNIAANRIQ--SLASLVYL  182 (417)
Q Consensus       132 l~~--~~~l~~L~~L~Ls~N~i~~l~-~l~~------------------------l~~L~~L~Ls~N~i~--~l~~~~~l  182 (417)
                      ||.  |-++..|-.|+||+|++..+| .+..                        +++|++|.+++.+-+  .+|  ..+
T Consensus       141 IPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P--tsl  218 (1255)
T KOG0444|consen  141 IPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP--TSL  218 (1255)
T ss_pred             CCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC--Cch
Confidence            543  444444445555555544443 2333                        444445555444322  222  245


Q ss_pred             hCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHH
Q psy13376        183 RRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRK  262 (417)
Q Consensus       183 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  262 (417)
                      ..+.+|..+|++.|.+...|.    .+..+++|+.|+++.+...+......    .-..++.++++.+.... -..+..+
T Consensus       219 d~l~NL~dvDlS~N~Lp~vPe----cly~l~~LrrLNLS~N~iteL~~~~~----~W~~lEtLNlSrNQLt~-LP~avcK  289 (1255)
T KOG0444|consen  219 DDLHNLRDVDLSENNLPIVPE----CLYKLRNLRRLNLSGNKITELNMTEG----EWENLETLNLSRNQLTV-LPDAVCK  289 (1255)
T ss_pred             hhhhhhhhccccccCCCcchH----HHhhhhhhheeccCcCceeeeeccHH----HHhhhhhhccccchhcc-chHHHhh
Confidence            567788889999999888887    66788999999988877554433222    22345555555554432 2344566


Q ss_pred             HHHhhHHhhhccCCCchhhhhhccChhhhhhhhhccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy13376        263 SEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDE  342 (417)
Q Consensus       263 ~~~l~~~~l~~l~~~~l~~~~~~~~~~~~~l~~l~~l~~l~~~~~~~li~~~~~~~f~~~~~L~~L~Ls~N~l~~l~~~~  342 (417)
                      +.+++..+..+..  --|+++.++-      -++..+....  ...|.++-+|.+ .+.|.+|+.|.|+.|++.++++..
T Consensus       290 L~kL~kLy~n~Nk--L~FeGiPSGI------GKL~~Levf~--aanN~LElVPEg-lcRC~kL~kL~L~~NrLiTLPeaI  358 (1255)
T KOG0444|consen  290 LTKLTKLYANNNK--LTFEGIPSGI------GKLIQLEVFH--AANNKLELVPEG-LCRCVKLQKLKLDHNRLITLPEAI  358 (1255)
T ss_pred             hHHHHHHHhccCc--ccccCCccch------hhhhhhHHHH--hhccccccCchh-hhhhHHHHHhcccccceeechhhh
Confidence            7777777776642  1155553332      2222332222  345667777755 788999999999999999988764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.64  E-value=2.1e-16  Score=168.01  Aligned_cols=132  Identities=18%  Similarity=0.178  Sum_probs=59.8

Q ss_pred             cccccCCcchhhhhcccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCcc
Q psy13376         58 LLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDT  137 (417)
Q Consensus        58 l~~~~n~i~~l~~ll~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~  137 (417)
                      |.+++|+|+.++...++|+.|++++|.++.++.+  +++|+.|++++|+++.+|..  +++|+.|++++|+++.+|.+. 
T Consensus       247 LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~l--p~~L~~L~Ls~N~Lt~LP~~--p~~L~~LdLS~N~L~~Lp~lp-  321 (788)
T PRK15387        247 LEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL--PSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLASLPALP-  321 (788)
T ss_pred             EEecCCccCcccCcccccceeeccCCchhhhhhc--hhhcCEEECcCCcccccccc--ccccceeECCCCccccCCCCc-
Confidence            3444555554444444555555555555544431  13444555555555544431  244555555555555444321 


Q ss_pred             ccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCC
Q psy13376        138 LVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKE  202 (417)
Q Consensus       138 l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~  202 (417)
                       .+|+.|++++|.|+.+|.+  ..+|++|++++|+|+.+|..     .++|+.|++++|.+..+|
T Consensus       322 -~~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~LP~l-----p~~L~~L~Ls~N~L~~LP  378 (788)
T PRK15387        322 -SELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQLASLPTL-----PSELYKLWAYNNRLTSLP  378 (788)
T ss_pred             -ccccccccccCcccccccc--ccccceEecCCCccCCCCCC-----CcccceehhhccccccCc
Confidence             2344444555554444422  12445555555555444331     133444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.60  E-value=3.7e-17  Score=182.30  Aligned_cols=148  Identities=24%  Similarity=0.294  Sum_probs=67.0

Q ss_pred             cccccEEEeecCCCC-CCCC--cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCC-cccC-CccccccceeEe
Q psy13376         72 YKLIKAVNLRIKTLR-KIEN--LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIE-QIQG-LDTLVNLKVLNL  146 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~-~i~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~-~l~~-~~~l~~L~~L~L  146 (417)
                      +++|+.|++++|.++ .+|.  +..+++|++|++++|.++...+.+.+++|++|++++|.++ .+|. +..+++|++|++
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  171 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL  171 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEEC
Confidence            555555555555554 2333  3355555555555555543222234445555555555544 2332 444555555555


Q ss_pred             ecCCCCC-cC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCccc
Q psy13376        147 KMNRIET-IE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHII  223 (417)
Q Consensus       147 s~N~i~~-l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~  223 (417)
                      ++|.+.. +| .+.++++|++|++++|.+....+ ..+..+++|+.|++++|.+....+   ..++.+++|+.|+++.+
T Consensus       172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n  246 (968)
T PLN00113        172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNLSGEIP---YEIGGLTSLNHLDLVYN  246 (968)
T ss_pred             ccCcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCccCCcCC---hhHhcCCCCCEEECcCc
Confidence            5554432 22 24444555555555554443211 233444444444444444443211   12344444444444433

>KOG4237|consensus

Probab=99.60  E-value=1.6e-17  Score=158.75  Aligned_cols=279  Identities=19%  Similarity=0.174  Sum_probs=190.3

Q ss_pred             ccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeC-CCCCcc
Q psy13376         59 LQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGY-NRIEQI  132 (417)
Q Consensus        59 ~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~-N~l~~l  132 (417)
                      +-+.-.++.++.- .+..+.++|..|+|+.+|+  |..+++|+.||||+|.|+.|.+  |.++.+|..|-+.+ |+|+++
T Consensus        52 dCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l  131 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL  131 (498)
T ss_pred             EccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence            3344445555544 6778899999999999987  9999999999999999999963  99999888887765 999999


Q ss_pred             cC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHH-
Q psy13376        133 QG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGF-  207 (417)
Q Consensus       133 ~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-  207 (417)
                      |.  |.++..|+.|.+.-|++..+.  .|..+++|..|.+-+|.+..+.. ..+..+..++++.+..|++......... 
T Consensus       132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~-~tf~~l~~i~tlhlA~np~icdCnL~wla  210 (498)
T KOG4237|consen  132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK-GTFQGLAAIKTLHLAQNPFICDCNLPWLA  210 (498)
T ss_pred             hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc-ccccchhccchHhhhcCccccccccchhh
Confidence            96  999999999999999999885  68999999999999999999877 5778899999999999997665432110 


Q ss_pred             -HHhcCCCcccccCcccCHHHHHHH-------HHHHhhhhhHHHHHhHHHH-HHHHHHHHHHHHHHHhhHHhhhccCCCc
Q psy13376        208 -AIAMVPQLQCYNNHIILEDERRTA-------LEQHMYDVRTETLKDLMVQ-RERQNALASQRKSEEKSKAFVENLEGDF  278 (417)
Q Consensus       208 -~~~~l~~L~~Ld~~~~~~~~~~~~-------~~~~~~~l~~L~~l~~~~~-~~~~~~~~~~~~~~~l~~~~l~~l~~~~  278 (417)
                       .....+  .....-.|...-+...       ...|......+........ ....-....+..+..++...+.+...+.
T Consensus       211 ~~~a~~~--ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~  288 (498)
T KOG4237|consen  211 DDLAMNP--IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR  288 (498)
T ss_pred             hHHhhch--hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence             000000  0011111111000000       0111111111111111111 1111223446666777777777776666


Q ss_pred             hhhhhhccChhhhhhhhhccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy13376        279 LFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRALK  351 (417)
Q Consensus       279 l~~~~~~~~~~~~~l~~l~~l~~l~~~~~~~li~~~~~~~f~~~~~L~~L~Ls~N~l~~l~~~~F~~~~~~~~  351 (417)
                      +-++.|.+..+..+|.           +..|-|+.+..++|.++++|++|+|.+|+|+.+.+++|+......+
T Consensus       289 i~~~aFe~~a~l~eL~-----------L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~  350 (498)
T KOG4237|consen  289 IEDGAFEGAAELQELY-----------LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST  350 (498)
T ss_pred             hhhhhhcchhhhhhhh-----------cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence            6667776665555665           3467788888888888888888888888888888888887664433

>KOG0472|consensus

Probab=99.60  E-value=5.3e-17  Score=155.49  Aligned_cols=140  Identities=28%  Similarity=0.345  Sum_probs=119.2

Q ss_pred             ccccCCcchhhhh---cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC
Q psy13376         59 LQESTNLAEKLQI---YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG  134 (417)
Q Consensus        59 ~~~~n~i~~l~~l---l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~  134 (417)
                      ...+|++..+++-   ++.|++++...|-++.+|+ ++.+.+|..|+|..|+|..+|.|.++..|++|+++.|.|+.+|.
T Consensus       166 ~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpa  245 (565)
T KOG0472|consen  166 DLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPA  245 (565)
T ss_pred             hccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHH
Confidence            4677777777654   8888899999999988876 88899999999999999999999999999999999999998885


Q ss_pred             --CccccccceeEeecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376        135 --LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       135 --~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~  201 (417)
                        ..+++++..|||.+|+++++| .+.-+.+|++||+|+|.|+.+|.  .++++ .|+.|-+.|||+..+
T Consensus       246 e~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~--sLgnl-hL~~L~leGNPlrTi  312 (565)
T KOG0472|consen  246 EHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPY--SLGNL-HLKFLALEGNPLRTI  312 (565)
T ss_pred             HHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCc--ccccc-eeeehhhcCCchHHH
Confidence              778889999999999999987 57778889999999999999876  56777 888999999998653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.60  E-value=4.7e-17  Score=181.48  Aligned_cols=163  Identities=23%  Similarity=0.241  Sum_probs=86.3

Q ss_pred             cccccCCcchhhhh--cccccEEEeecCCCCC-CCC-cCCCcccceEeeeCCCCC-CcCC-CCCCccCceeeeeCCCCC-
Q psy13376         58 LLQESTNLAEKLQI--YKLIKAVNLRIKTLRK-IEN-LWMMENLVELDLSMNHIG-VIEN-LDQLVCLEKLDLGYNRIE-  130 (417)
Q Consensus        58 l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~-i~~-l~~l~~L~~L~Ls~N~l~-~l~~-l~~l~~L~~L~Ls~N~l~-  130 (417)
                      ++++.|++....+.  +++|++|++++|.++. ++. ++.+++|++|++++|.+. .+|. +.++++|++|++++|.+. 
T Consensus       123 L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  202 (968)
T PLN00113        123 LNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG  202 (968)
T ss_pred             EECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC
Confidence            34555555432222  5666666666666653 232 556666666666666654 3332 556666666666666654 


Q ss_pred             cccC-CccccccceeEeecCCCCC-cC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHH
Q psy13376        131 QIQG-LDTLVNLKVLNLKMNRIET-IE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGF  207 (417)
Q Consensus       131 ~l~~-~~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  207 (417)
                      .+|. +..+++|++|++++|.++. +| .+..+++|++|++++|.++...+ ..+..+++|+.|++++|.+....+   .
T Consensus       203 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p---~  278 (968)
T PLN00113        203 QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIP---P  278 (968)
T ss_pred             cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeeeccCc---h
Confidence            2332 5556666666666666553 23 35556666666666665553222 244555666666666665543222   1


Q ss_pred             HHhcCCCcccccCcccC
Q psy13376        208 AIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       208 ~~~~l~~L~~Ld~~~~~  224 (417)
                      .+..+++|+.|+++.+.
T Consensus       279 ~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        279 SIFSLQKLISLDLSDNS  295 (968)
T ss_pred             hHhhccCcCEEECcCCe
Confidence            33445555555555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.59  E-value=3.1e-15  Score=159.18  Aligned_cols=203  Identities=17%  Similarity=0.177  Sum_probs=98.4

Q ss_pred             cccccccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhhcccccEEEeec
Q psy13376          3 IPTTVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRI   82 (417)
Q Consensus         3 ip~~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~ll~~L~~L~Ls~   82 (417)
                      +|...++++.++++.|.++.++.+.  ..|..+.   +..+.+..++........|.+..|++..++..+++|+.|++++
T Consensus       237 LP~lp~~Lk~LdLs~N~LtsLP~lp--~sL~~L~---Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~  311 (788)
T PRK15387        237 LPALPPELRTLEVSGNQLTSLPVLP--PGLLELS---IFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD  311 (788)
T ss_pred             CCCCCCCCcEEEecCCccCcccCcc--cccceee---ccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCC
Confidence            3444556666666666666665321  1222222   1222222221112222234455566665554456666666666


Q ss_pred             CCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCc------------------ccccccee
Q psy13376         83 KTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLD------------------TLVNLKVL  144 (417)
Q Consensus        83 N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~------------------~l~~L~~L  144 (417)
                      |+++.++.+  ..+|+.|++++|.++.+|.+  ..+|+.|+|++|+|+.+|.+.                  ...+|+.|
T Consensus       312 N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~L  387 (788)
T PRK15387        312 NQLASLPAL--PSELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKEL  387 (788)
T ss_pred             CccccCCCC--cccccccccccCcccccccc--ccccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceE
Confidence            666665431  11233333333333333321  124444555555544444211                  01245555


Q ss_pred             EeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       145 ~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      ++++|.|+.+|..  .++|+.|++++|.++.+|..     ..+|+.|++++|.++.+|.    .+..+++|+.++++.+.
T Consensus       388 dLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l-----~~~L~~L~Ls~NqLt~LP~----sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        388 IVSGNRLTSLPVL--PSELKELMVSGNRLTSLPML-----PSGLLSLSVYRNQLTRLPE----SLIHLSSETTVNLEGNP  456 (788)
T ss_pred             EecCCcccCCCCc--ccCCCEEEccCCcCCCCCcc-----hhhhhhhhhccCcccccCh----HHhhccCCCeEECCCCC
Confidence            5555555555432  24566666666666655431     2345566666666666654    35566777777766655


Q ss_pred             H
Q psy13376        225 E  225 (417)
Q Consensus       225 ~  225 (417)
                      .
T Consensus       457 L  457 (788)
T PRK15387        457 L  457 (788)
T ss_pred             C
Confidence            3

>KOG0472|consensus

Probab=99.58  E-value=3.9e-17  Score=156.34  Aligned_cols=160  Identities=19%  Similarity=0.251  Sum_probs=132.4

Q ss_pred             ccccCCcchhhhh---cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCccc
Q psy13376         59 LQESTNLAEKLQI---YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQ  133 (417)
Q Consensus        59 ~~~~n~i~~l~~l---l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~  133 (417)
                      ...+|+|..+++-   +.++..+++.+|+++..++ .-.++.|++||...|-++.+|. ++++.+|..|+|..|+|..+|
T Consensus       143 ~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP  222 (565)
T KOG0472|consen  143 DATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP  222 (565)
T ss_pred             hccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC
Confidence            4666777777655   6778888888888888865 4448889999999999998875 899999999999999999999


Q ss_pred             CCccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhc
Q psy13376        134 GLDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAM  211 (417)
Q Consensus       134 ~~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  211 (417)
                      .|.++..|.+|+++.|.|+.+|  ...+++++.+||+++|+++++|.  .+..+++|..||+++|.|+..|.    .+++
T Consensus       223 ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd--e~clLrsL~rLDlSNN~is~Lp~----sLgn  296 (565)
T KOG0472|consen  223 EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD--EICLLRSLERLDLSNNDISSLPY----SLGN  296 (565)
T ss_pred             CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch--HHHHhhhhhhhcccCCccccCCc----cccc
Confidence            9999999999999999998887  36789999999999999999886  45678889999999999999886    5666


Q ss_pred             CCCcccccCcccCH
Q psy13376        212 VPQLQCYNNHIILE  225 (417)
Q Consensus       212 l~~L~~Ld~~~~~~  225 (417)
                      + .|+.|-+...+.
T Consensus       297 l-hL~~L~leGNPl  309 (565)
T KOG0472|consen  297 L-HLKFLALEGNPL  309 (565)
T ss_pred             c-eeeehhhcCCch
Confidence            6 777776655553

>KOG1259|consensus

Probab=99.57  E-value=1.8e-16  Score=146.84  Aligned_cols=154  Identities=25%  Similarity=0.332  Sum_probs=136.5

Q ss_pred             cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC-CccccccceeEeecC
Q psy13376         72 YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMN  149 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~N  149 (417)
                      +..|+.++||+|.|+.++. ..-.|.++.|++|+|.|..+.++..+++|+.||||+|.++.+.+ -..+-+.+.|.|+.|
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence            5679999999999999976 77889999999999999999999999999999999999999987 446778999999999


Q ss_pred             CCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCC---CcccccCcccCH
Q psy13376        150 RIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVP---QLQCYNNHIILE  225 (417)
Q Consensus       150 ~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~---~L~~Ld~~~~~~  225 (417)
                      .|.+++++..+.+|..||+++|+|..+..+..++++|.|+++.|.+||+..+++|+..++..+.   +=-.||...-..
T Consensus       363 ~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD~~~~~~  441 (490)
T KOG1259|consen  363 KIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEISLDNEPGNQ  441 (490)
T ss_pred             hHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHHHhhhhhheecCCCCcch
Confidence            9999999999999999999999999999988999999999999999999999999988776553   222455554443

>KOG0444|consensus

Probab=99.57  E-value=2e-16  Score=158.57  Aligned_cols=255  Identities=19%  Similarity=0.192  Sum_probs=169.5

Q ss_pred             cccCCcchhhhh---cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCC--CcCC-CCCCccCceeeeeCCCCCcc
Q psy13376         60 QESTNLAEKLQI---YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIG--VIEN-LDQLVCLEKLDLGYNRIEQI  132 (417)
Q Consensus        60 ~~~n~i~~l~~l---l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~--~l~~-l~~l~~L~~L~Ls~N~l~~l  132 (417)
                      ++..++..++.-   +.+|++|.+++|++.++-+ ++.+|.|+.+++..|++.  .+|. +-.+..|+.||||+|+++++
T Consensus        39 Lnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev  118 (1255)
T KOG0444|consen   39 LNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV  118 (1255)
T ss_pred             echhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhc
Confidence            333444444433   8899999999999998855 999999999999999987  4664 78899999999999999999


Q ss_pred             cC-CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHH
Q psy13376        133 QG-LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAI  209 (417)
Q Consensus       133 ~~-~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~  209 (417)
                      |. +....++-.|+||+|+|.++|.  |.+++.|-+||||+|++..+|+  .++.+..|++|.|++||+...      -+
T Consensus       119 P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP--Q~RRL~~LqtL~Ls~NPL~hf------QL  190 (1255)
T KOG0444|consen  119 PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP--QIRRLSMLQTLKLSNNPLNHF------QL  190 (1255)
T ss_pred             chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH--HHHHHhhhhhhhcCCChhhHH------HH
Confidence            95 8888899999999999999984  7889999999999999999987  468899999999999998653      34


Q ss_pred             hcCCCcccccCcccCHHHHHHH-HHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhhhccCCCchhhhhhccCh
Q psy13376        210 AMVPQLQCYNNHIILEDERRTA-LEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDV  288 (417)
Q Consensus       210 ~~l~~L~~Ld~~~~~~~~~~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~l~~~~~~~~~  288 (417)
                      ..+|+++.|..-..+...+... -.-...++.+|...+.+.+..+. ..++...+..++..+++......+--..-    
T Consensus       191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL~~~~~----  265 (1255)
T KOG0444|consen  191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITELNMTEG----  265 (1255)
T ss_pred             hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCceeeeeccHH----
Confidence            5666666655444433222111 01123445555555555555442 22333344444444444433222210000    


Q ss_pred             hhhhhhhhccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy13376        289 EGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLR  336 (417)
Q Consensus       289 ~~~~l~~l~~l~~l~~~~~~~li~~~~~~~f~~~~~L~~L~Ls~N~l~  336 (417)
                      +..      +++.+.  ...|.+..+| .+...+++|+.|.+.+|++.
T Consensus       266 ~W~------~lEtLN--lSrNQLt~LP-~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  266 EWE------NLETLN--LSRNQLTVLP-DAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             HHh------hhhhhc--cccchhccch-HHHhhhHHHHHHHhccCccc
Confidence            000      001111  2244455555 45666777777777777654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.55  E-value=2.3e-15  Score=133.23  Aligned_cols=139  Identities=30%  Similarity=0.387  Sum_probs=59.2

Q ss_pred             cccCCcchhhhh--cccccEEEeecCCCCCCCCcC-CCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC-C
Q psy13376         60 QESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLW-MMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG-L  135 (417)
Q Consensus        60 ~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~-~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-~  135 (417)
                      +..+.|..+...  ..++++|+|.+|.|+.++.++ .+.+|+.|++++|.|+.++++..++.|++|++++|+|++++. +
T Consensus         4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l   83 (175)
T PF14580_consen    4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGL   83 (175)
T ss_dssp             --------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHH
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccch
Confidence            444556666665  667899999999999999987 689999999999999999999999999999999999999964 4


Q ss_pred             -ccccccceeEeecCCCCCcC---CCCCCCCCcEEeccCCccCcchhh--hhhhCCCCcCEEeccCCCCCC
Q psy13376        136 -DTLVNLKVLNLKMNRIETIE---GLDHLEKLELFNIAANRIQSLASL--VYLRRFKHLGRLNIERNPVCD  200 (417)
Q Consensus       136 -~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~N~l~~  200 (417)
                       ..+|+|++|++++|+|..+.   .+..+++|++|++.+|.++..+..  ..+..+|+|+.||-  .+++.
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~--~~V~~  152 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG--QDVTE  152 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT--EETTS
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC--EEccH
Confidence             46899999999999998875   467899999999999999876542  24678999999984  44444

>KOG0617|consensus

Probab=99.53  E-value=5.6e-16  Score=133.12  Aligned_cols=143  Identities=21%  Similarity=0.345  Sum_probs=113.6

Q ss_pred             ccccCCcchhhhh---cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcC-CCCCCccCceeeeeCCCCC--c
Q psy13376         59 LQESTNLAEKLQI---YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIE-NLDQLVCLEKLDLGYNRIE--Q  131 (417)
Q Consensus        59 ~~~~n~i~~l~~l---l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~--~  131 (417)
                      -++.|+++.+++-   +.+|++|++++|+|+.+|. ++.+++|+.|+++-|++..+| +|+.++.|+.|||++|++.  .
T Consensus        39 tLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~  118 (264)
T KOG0617|consen   39 TLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENS  118 (264)
T ss_pred             hcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccccccc
Confidence            3667777777654   7888888888888888876 888888888888888888777 4888888888888888886  5


Q ss_pred             ccC-CccccccceeEeecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        132 IQG-LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       132 l~~-~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      +|+ |..+..|+.|+|++|.+.-+| .++.+++|+.|.+.+|.+-++|.  .++.+..|+.|.+.+|+++-+|+
T Consensus       119 lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk--eig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  119 LPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK--EIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             CCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH--HHHHHHHHHHHhcccceeeecCh
Confidence            665 777888888888888888776 57888888888888888877765  45777888888888888887776

>KOG4237|consensus

Probab=99.50  E-value=3.8e-15  Score=142.63  Aligned_cols=137  Identities=26%  Similarity=0.291  Sum_probs=112.8

Q ss_pred             EEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeec-CC
Q psy13376         77 AVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKM-NR  150 (417)
Q Consensus        77 ~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~-N~  150 (417)
                      ..+-++-+++.+|. +.  +.-..++|..|+|+.+|+  |+.+++|+.||||+|+|+.|.+  |.++++|..|-+.+ |+
T Consensus        50 ~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             eEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            34556666777764 32  467889999999999985  9999999999999999999975  99999987777766 99


Q ss_pred             CCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCccccc
Q psy13376        151 IETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYN  219 (417)
Q Consensus       151 i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld  219 (417)
                      |+.++  .|+++..|+.|.+.-|++..+.. ..|..+++|..|.+.+|.+..++.   ..+..+..++.+.
T Consensus       128 I~~l~k~~F~gL~slqrLllNan~i~Cir~-~al~dL~~l~lLslyDn~~q~i~~---~tf~~l~~i~tlh  194 (498)
T KOG4237|consen  128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQ-DALRDLPSLSLLSLYDNKIQSICK---GTFQGLAAIKTLH  194 (498)
T ss_pred             hhhhhhhHhhhHHHHHHHhcChhhhcchhH-HHHHHhhhcchhcccchhhhhhcc---ccccchhccchHh
Confidence            99997  59999999999999999999877 688999999999999999988775   2344455555443

>KOG0618|consensus

Probab=99.49  E-value=6.7e-16  Score=160.98  Aligned_cols=309  Identities=14%  Similarity=0.112  Sum_probs=160.6

Q ss_pred             eccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhh--cccccEEEeecCCCCCCCC
Q psy13376         13 IGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIEN   90 (417)
Q Consensus        13 l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~   90 (417)
                      +++..|.++ ...+.++.++..+.   ...+.+..+.+.......+..+.|.+..+...  ..+++.+++++|+++.+|.
T Consensus       183 ldLr~N~~~-~~dls~~~~l~~l~---c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~  258 (1081)
T KOG0618|consen  183 LDLRYNEME-VLDLSNLANLEVLH---CERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPE  258 (1081)
T ss_pred             eecccchhh-hhhhhhccchhhhh---hhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchH
Confidence            777777777 44555554444444   44444444433333333445566666644333  5667777777777777765


Q ss_pred             -cCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC-CccccccceeEeecCCCCCcCC--CCCCC-CCc
Q psy13376         91 -LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIEG--LDHLE-KLE  164 (417)
Q Consensus        91 -l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~i~~l~~--l~~l~-~L~  164 (417)
                       +..+.+|+.++..+|.++.++. +...++|+.|.+.+|.++.+|. ..++..|++|+|..|+|..+|.  +.... .|+
T Consensus       259 wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~  338 (1081)
T KOG0618|consen  259 WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLN  338 (1081)
T ss_pred             HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHH
Confidence             5666777777777777766653 5566666777777777776665 4446667777777777666652  22222 244


Q ss_pred             EEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHHHHHHHHHHHhhhhhHHHH
Q psy13376        165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETL  244 (417)
Q Consensus       165 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~~~~l~~L~~  244 (417)
                      .|+.+.|.+...+.... ..++.|+.|++.+|.+++..-   .++..+++|+.|+++++..   ....+.....+..|++
T Consensus       339 ~ln~s~n~l~~lp~~~e-~~~~~Lq~LylanN~Ltd~c~---p~l~~~~hLKVLhLsyNrL---~~fpas~~~kle~Lee  411 (1081)
T KOG0618|consen  339 TLNVSSNKLSTLPSYEE-NNHAALQELYLANNHLTDSCF---PVLVNFKHLKVLHLSYNRL---NSFPASKLRKLEELEE  411 (1081)
T ss_pred             HHhhhhccccccccccc-hhhHHHHHHHHhcCcccccch---hhhccccceeeeeeccccc---ccCCHHHHhchHHhHH
Confidence            44444444444433211 233445556666666655332   2455666666666666642   2233445556666666


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHhhHHhhhccCCCchhhhhhccChhhhhhhhhccCCccccccHHHHHHHHHHHHHHHHHH
Q psy13376        245 KDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCTIPTKLGRSVAELYNNFKRDFLEVSSK  324 (417)
Q Consensus       245 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~l~~~~~~~~~~~~~l~~l~~l~~l~~~~~~~li~~~~~~~f~~~~~  324 (417)
                      +++++|...... .+......++....-......+.+-+ .    ...++   .   +.  ...|-++++.-..-..-++
T Consensus       412 L~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fPe~~-~----l~qL~---~---lD--lS~N~L~~~~l~~~~p~p~  477 (1081)
T KOG0618|consen  412 LNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFPELA-Q----LPQLK---V---LD--LSCNNLSEVTLPEALPSPN  477 (1081)
T ss_pred             Hhcccchhhhhh-HHHHhhhhhHHHhhcCCceeechhhh-h----cCcce---E---Ee--cccchhhhhhhhhhCCCcc
Confidence            666666655444 33333333333333322211111100 0    00000   0   00  1122222222111222277


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHH
Q psy13376        325 LYEFGTSQHSLRQNEVDEFQAV  346 (417)
Q Consensus       325 L~~L~Ls~N~l~~l~~~~F~~~  346 (417)
                      |++|||++|.-...+..+|..+
T Consensus       478 LkyLdlSGN~~l~~d~~~l~~l  499 (1081)
T KOG0618|consen  478 LKYLDLSGNTRLVFDHKTLKVL  499 (1081)
T ss_pred             cceeeccCCcccccchhhhHHh
Confidence            8888888888666666666554

>KOG0617|consensus

Probab=99.46  E-value=1.9e-15  Score=129.90  Aligned_cols=154  Identities=19%  Similarity=0.276  Sum_probs=133.9

Q ss_pred             cchhhhh--cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC-Ccccc
Q psy13376         65 LAEKLQI--YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG-LDTLV  139 (417)
Q Consensus        65 i~~l~~l--l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~-~~~l~  139 (417)
                      ..++.++  +++++.|.+|+|+++.+++ +..+.+|+.|++++|+|+++|. ++.+++|+.|+++.|++..+|. |+.+|
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p  102 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP  102 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence            3444555  8889999999999999976 9999999999999999999985 9999999999999999999984 99999


Q ss_pred             ccceeEeecCCCCC--cC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcc
Q psy13376        140 NLKVLNLKMNRIET--IE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQ  216 (417)
Q Consensus       140 ~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~  216 (417)
                      .|+.|+|.+|++..  +| .|-.+..|+.|++++|.+.-+|.  .++++++|+.|.+.+|.+-+.|.    .++.+..|+
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~--dvg~lt~lqil~lrdndll~lpk----eig~lt~lr  176 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP--DVGKLTNLQILSLRDNDLLSLPK----EIGDLTRLR  176 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh--hhhhhcceeEEeeccCchhhCcH----HHHHHHHHH
Confidence            99999999999975  45 57788999999999999998886  56899999999999999998886    667778888


Q ss_pred             cccCcccC
Q psy13376        217 CYNNHIIL  224 (417)
Q Consensus       217 ~Ld~~~~~  224 (417)
                      .|......
T Consensus       177 elhiqgnr  184 (264)
T KOG0617|consen  177 ELHIQGNR  184 (264)
T ss_pred             HHhcccce
Confidence            77665543

>KOG3207|consensus

Probab=99.45  E-value=2.3e-14  Score=138.93  Aligned_cols=217  Identities=24%  Similarity=0.262  Sum_probs=166.0

Q ss_pred             ccccceeeccccccCCCCchhhhH-HHHHhcCCCCCChhhhhccccccccccccccccCCcchh-hhhcccccEEEeecC
Q psy13376          6 TVDRIKKIGLIKDRAGDESTLKNL-AQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEK-LQIYKLIKAVNLRIK   83 (417)
Q Consensus         6 ~~~~l~~l~l~~n~l~dl~~L~~l-~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l-~~ll~~L~~L~Ls~N   83 (417)
                      .+++++.+|+++|-+.++.++-++ .+|..+..-.++.+.+...                +.+. ...+++|+.|.++.|
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~----------------~~s~~~~~l~~lK~L~l~~C  207 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF----------------ISSNTTLLLSHLKQLVLNSC  207 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC----------------ccccchhhhhhhheEEeccC
Confidence            467888999999999988876654 2222222111222222211                1111 112899999999999


Q ss_pred             CCCCCC--C-cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC---CccccccceeEeecCCCCCcC
Q psy13376         84 TLRKIE--N-LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG---LDTLVNLKVLNLKMNRIETIE  155 (417)
Q Consensus        84 ~i~~i~--~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~---~~~l~~L~~L~Ls~N~i~~l~  155 (417)
                      +++.-+  . +..+|+|+.|+|.+|..-.+.  ...-+..|++|||++|++-+++.   ...+|.|+.|+++.+.|+++.
T Consensus       208 Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~  287 (505)
T KOG3207|consen  208 GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIA  287 (505)
T ss_pred             CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhc
Confidence            998422  1 668899999999999533222  35677899999999999987773   788999999999999999873


Q ss_pred             --C------CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCcc-HHHHhcCCCcccccCcccCHH
Q psy13376        156 --G------LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVD-GFAIAMVPQLQCYNNHIILED  226 (417)
Q Consensus       156 --~------l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~l~~L~~Ld~~~~~~~  226 (417)
                        +      ...+++|++|+++.|+|.+|+.+..+..+++|++|.+..|++....... ..+++.++++..|+...|.+.
T Consensus       288 ~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~  367 (505)
T KOG3207|consen  288 EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPN  367 (505)
T ss_pred             CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhcccccChH
Confidence              2      2567899999999999999999888899999999999999998765422 237788999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy13376        227 ERRTALEQHMYD  238 (417)
Q Consensus       227 ~~~~~~~~~~~~  238 (417)
                      ++..|+..|...
T Consensus       368 eRR~AEl~~~~~  379 (505)
T KOG3207|consen  368 ERRDAELYYLSK  379 (505)
T ss_pred             HhhhhhhhHHhh
Confidence            999999988766

>KOG1644|consensus

Probab=99.41  E-value=2.1e-13  Score=120.13  Aligned_cols=140  Identities=31%  Similarity=0.372  Sum_probs=122.7

Q ss_pred             ccceEeeeCCCCCCcCCCCC-CccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcC-CC-CCCCCCcEEeccCCc
Q psy13376         96 NLVELDLSMNHIGVIENLDQ-LVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIE-GL-DHLEKLELFNIAANR  172 (417)
Q Consensus        96 ~L~~L~Ls~N~l~~l~~l~~-l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~-~l-~~l~~L~~L~Ls~N~  172 (417)
                      .=++++|.+.++..+..++. +.+...+||++|.+..++.|..++.|.+|.|++|+|+.+. .+ .-+++|..|.+.+|.
T Consensus        20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             cccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            35567777777776665443 3477889999999999999999999999999999999985 34 345789999999999


Q ss_pred             cCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHHHHHHHHHHH
Q psy13376        173 IQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQH  235 (417)
Q Consensus       173 i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~  235 (417)
                      |..+..+..+..+|+|++|.+-+||++....|+.+++..+|+|+.||...++..++..|+.++
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f  162 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVFF  162 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHHHHh
Confidence            999988888999999999999999999999999999999999999999999999999999888

>KOG0618|consensus

Probab=99.40  E-value=5.9e-14  Score=146.65  Aligned_cols=310  Identities=17%  Similarity=0.190  Sum_probs=149.6

Q ss_pred             cccceeeccccccCCCCch-hhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhh-ccccc-EEEeecC
Q psy13376          7 VDRIKKIGLIKDRAGDEST-LKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIK-AVNLRIK   83 (417)
Q Consensus         7 ~~~l~~l~l~~n~l~dl~~-L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l-l~~L~-~L~Ls~N   83 (417)
                      ++++..+|++.|.+..++. +..+.........--  ..+..++...  ...+.+..|.+..--.. ...++ .|+|++|
T Consensus       113 lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N--~~~~~lg~~~--ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N  188 (1081)
T KOG0618|consen  113 LKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNN--EKIQRLGQTS--IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYN  188 (1081)
T ss_pred             hhcccccccchhccCCCchhHHhhhHHHHHhhhcc--hhhhhhcccc--chhhhhhhhhcccchhcchhhhheeeecccc
Confidence            4567778888888888875 344433333321100  1111121111  11122333333222111 22233 4777777


Q ss_pred             CCCCCCCcCCCcccceEeeeCCCCCCcCC--------------------CCCCccCceeeeeCCCCCcccC-Cccccccc
Q psy13376         84 TLRKIENLWMMENLVELDLSMNHIGVIEN--------------------LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLK  142 (417)
Q Consensus        84 ~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~--------------------l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~  142 (417)
                      .+. .-.+..+++|+.+....|++..+..                    -....+|+++++++|+++.+|. +..+++|+
T Consensus       189 ~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle  267 (1081)
T KOG0618|consen  189 EME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLE  267 (1081)
T ss_pred             hhh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccce
Confidence            777 4445555566666666665554421                    1112244444444444444444 44444444


Q ss_pred             eeEeecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCC-cccccC
Q psy13376        143 VLNLKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQ-LQCYNN  220 (417)
Q Consensus       143 ~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~-L~~Ld~  220 (417)
                      .++..+|.++.++ .+...++|+.|.+.+|.+..++.  ....+++|++|+|..|.+...|+   ..+..... |..++.
T Consensus       268 ~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~--~le~~~sL~tLdL~~N~L~~lp~---~~l~v~~~~l~~ln~  342 (1081)
T KOG0618|consen  268 ALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP--FLEGLKSLRTLDLQSNNLPSLPD---NFLAVLNASLNTLNV  342 (1081)
T ss_pred             EecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC--cccccceeeeeeehhccccccch---HHHhhhhHHHHHHhh
Confidence            4444444444443 23344444444444554444443  23345555555555555555544   11111111 222322


Q ss_pred             cccCHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhhhccCCCchhhhhhccChhhhhhhhhccCC
Q psy13376        221 HIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEGQEMLKLCTIP  300 (417)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~l~~~~~~~~~~~~~l~~l~~l~  300 (417)
                      +.                           +....-..-.......+...++.+..   +-+.+|-....+..|+      
T Consensus       343 s~---------------------------n~l~~lp~~~e~~~~~Lq~LylanN~---Ltd~c~p~l~~~~hLK------  386 (1081)
T KOG0618|consen  343 SS---------------------------NKLSTLPSYEENNHAALQELYLANNH---LTDSCFPVLVNFKHLK------  386 (1081)
T ss_pred             hh---------------------------ccccccccccchhhHHHHHHHHhcCc---ccccchhhhcccccee------
Confidence            22                           22111110001112222333333321   1222222222222222      


Q ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhHHHHHHhhHHh
Q psy13376        301 TKLGRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRALKLKSCHEAVKNKTRY  365 (417)
Q Consensus       301 ~l~~~~~~~li~~~~~~~f~~~~~L~~L~Ls~N~l~~l~~~~F~~~~~~~~~~~~~~~~~~~~~~  365 (417)
                      .+.  ..-|.+.+||+..+..++.|++|+||+|+++.+. ++-..+.+.-+...+-+.+.-+.++
T Consensus       387 VLh--LsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fPe~  448 (1081)
T KOG0618|consen  387 VLH--LSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFPEL  448 (1081)
T ss_pred             eee--ecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeechhh
Confidence            222  4567799999999999999999999999999999 7777777777666665544444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.39  E-value=2e-13  Score=145.96  Aligned_cols=182  Identities=15%  Similarity=0.182  Sum_probs=92.2

Q ss_pred             ccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccc-cccccccccccccCCcchhhhh-cccccEEEeecCCC
Q psy13376          8 DRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKG-VISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKTL   85 (417)
Q Consensus         8 ~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~-~~~~~~~~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i   85 (417)
                      .+++.+++..|.++.++.-. ..+|..+.   +..+.+..++ .+......+.++.|++..++.. .++|+.|++++|++
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~---Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L  274 (754)
T PRK15370        199 EQITTLILDNNELKSLPENL-QGNIKTLY---ANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKI  274 (754)
T ss_pred             cCCcEEEecCCCCCcCChhh-ccCCCEEE---CCCCccccCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCcc
Confidence            35677777777777665311 11222221   1112222210 0111122344555655555443 45566666666666


Q ss_pred             CCCCC-cCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCCC
Q psy13376         86 RKIEN-LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKL  163 (417)
Q Consensus        86 ~~i~~-l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L  163 (417)
                      +.+|. +.  ++|+.|++++|+++.+|. +  .++|+.|++++|.++.+|.. ..++|+.|++++|.++.+|.. -.++|
T Consensus       275 ~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~Lt~LP~~-l~~sL  348 (754)
T PRK15370        275 SCLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTALPET-LPPGLKTLEAGENALTSLPAS-LPPEL  348 (754)
T ss_pred             CccccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCccccCCcc-ccccceeccccCCccccCChh-hcCcc
Confidence            65544 22  356666666666665543 2  13455555666655555431 114566666666666655521 12466


Q ss_pred             cEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        164 ELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       164 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      +.|++++|+|+.+|.  .+  .++|+.|++++|+++.+|.
T Consensus       349 ~~L~Ls~N~L~~LP~--~l--p~~L~~LdLs~N~Lt~LP~  384 (754)
T PRK15370        349 QVLDVSKNQITVLPE--TL--PPTITTLDVSRNALTNLPE  384 (754)
T ss_pred             cEEECCCCCCCcCCh--hh--cCCcCEEECCCCcCCCCCH
Confidence            666666666665554  11  2456666666666666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.32  E-value=1.1e-12  Score=140.25  Aligned_cols=205  Identities=13%  Similarity=0.109  Sum_probs=146.0

Q ss_pred             ccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccc-cccccccccccccCCcchhhhh-cccccEEEeecCCC
Q psy13376          8 DRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKG-VISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKTL   85 (417)
Q Consensus         8 ~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~-~~~~~~~~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i   85 (417)
                      .+++.+++..|.++.++.- -...|..+.   ++.+.+..++ .+......|.++.|++..++.- .++|+.|++++|++
T Consensus       220 ~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~---Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~L  295 (754)
T PRK15370        220 GNIKTLYANSNQLTSIPAT-LPDTIQEME---LSINRITELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSI  295 (754)
T ss_pred             cCCCEEECCCCccccCChh-hhccccEEE---CcCCccCcCChhHhCCCCEEECcCCccCccccccCCCCcEEECCCCcc
Confidence            5788999999999877641 011222222   2222222220 0112334567888999887765 67899999999999


Q ss_pred             CCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC-CccccccceeEeecCCCCCcCCCCCCCCCc
Q psy13376         86 RKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIEGLDHLEKLE  164 (417)
Q Consensus        86 ~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~  164 (417)
                      +.++... .++|+.|++++|.++.+|.. -.++|+.|++++|.++.+|. +.  ++|+.|++++|+|+.+|. .-.++|+
T Consensus       296 t~LP~~l-p~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~-~lp~~L~  370 (754)
T PRK15370        296 RTLPAHL-PSGITHLNVQSNSLTALPET-LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPE-TLPPTIT  370 (754)
T ss_pred             ccCcccc-hhhHHHHHhcCCccccCCcc-ccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCCh-hhcCCcC
Confidence            9887511 25799999999999988751 13689999999999998886 43  689999999999998874 1236899


Q ss_pred             EEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCH
Q psy13376        165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILE  225 (417)
Q Consensus       165 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~  225 (417)
                      +|++++|.++.+|.  .+.  +.|+.|++++|++..+|..-......++++..+++..++.
T Consensus       371 ~LdLs~N~Lt~LP~--~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        371 TLDVSRNALTNLPE--NLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             EEECCCCcCCCCCH--hHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence            99999999998876  222  3688999999999988763333445567888877766653

>KOG1259|consensus

Probab=99.25  E-value=6.7e-13  Score=123.36  Aligned_cols=126  Identities=25%  Similarity=0.313  Sum_probs=115.0

Q ss_pred             ccccccccccCCcchhhhh---cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCC-CCCccCceeeeeCCC
Q psy13376         53 ENLLSLLQESTNLAEKLQI---YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENL-DQLVCLEKLDLGYNR  128 (417)
Q Consensus        53 ~~~~~l~~~~n~i~~l~~l---l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l-~~l~~L~~L~Ls~N~  128 (417)
                      +....+++++|.|+.++.-   .+.++.|++|+|.|..+..+..+++|+.||||+|.++.+.++ .++.+++.|.|+.|.
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence            3445678999999999765   899999999999999999999999999999999999999873 578899999999999


Q ss_pred             CCcccCCccccccceeEeecCCCCCcC---CCCCCCCCcEEeccCCccCcchh
Q psy13376        129 IEQIQGLDTLVNLKVLNLKMNRIETIE---GLDHLEKLELFNIAANRIQSLAS  178 (417)
Q Consensus       129 l~~l~~~~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~  178 (417)
                      |.+++++..+.+|..||+++|+|..+.   +++++|.|+++.|.+|.+..++.
T Consensus       364 iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  364 IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            999999999999999999999999875   69999999999999999988765

>KOG1859|consensus

Probab=99.19  E-value=2.1e-13  Score=139.10  Aligned_cols=140  Identities=25%  Similarity=0.395  Sum_probs=125.3

Q ss_pred             cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCc--cccccceeEeec
Q psy13376         72 YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLD--TLVNLKVLNLKM  148 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~--~l~~L~~L~Ls~  148 (417)
                      ...|.+.+.++|.++.++. +.-++.|+.|+|++|+++.+..+..+++|++|||++|.++.+|.++  .+ +|..|++++
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn  241 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN  241 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence            5667888999999998865 8888999999999999999999999999999999999999999743  34 499999999


Q ss_pred             CCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcC
Q psy13376        149 NRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMV  212 (417)
Q Consensus       149 N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l  212 (417)
                      |.++++.++.++.+|+.||+++|-|.+...+..+..+..|+.|+|.|||++.-|.|+......+
T Consensus       242 N~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl  305 (1096)
T KOG1859|consen  242 NALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYL  305 (1096)
T ss_pred             cHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHh
Confidence            9999999999999999999999999998888888899999999999999999988876655443

>KOG3207|consensus

Probab=99.12  E-value=5.7e-12  Score=122.49  Aligned_cols=189  Identities=19%  Similarity=0.168  Sum_probs=130.9

Q ss_pred             cccccEEEeecCCCCCCCC---cCCCcccceEeeeCCCCCCcC--C-CCCCccCceeeeeCCCCCccc--CCccccccce
Q psy13376         72 YKLIKAVNLRIKTLRKIEN---LWMMENLVELDLSMNHIGVIE--N-LDQLVCLEKLDLGYNRIEQIQ--GLDTLVNLKV  143 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~---l~~l~~L~~L~Ls~N~l~~l~--~-l~~l~~L~~L~Ls~N~l~~l~--~~~~l~~L~~  143 (417)
                      +++|+.|+++.|.+....+   -..+++|+.|.++.|.+++-.  . +..+|+|+.|+|..|..-.+.  ....+..|+.
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            8889999999988876532   336778889999999888432  2 567889999999988532222  2455678999


Q ss_pred             eEeecCCCCCcC---CCCCCCCCcEEeccCCccCcchhhhh-----hhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCc
Q psy13376        144 LNLKMNRIETIE---GLDHLEKLELFNIAANRIQSLASLVY-----LRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL  215 (417)
Q Consensus       144 L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~~~-----l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L  215 (417)
                      |+|++|++-+.+   ..+.++.|+.|+++.+.|.++..++.     ...+++|++|++..|++.+++..  ..+..+++|
T Consensus       251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl--~~l~~l~nl  328 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL--NHLRTLENL  328 (505)
T ss_pred             ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc--chhhccchh
Confidence            999999988775   47889999999999999988654332     35789999999999999888773  344556777


Q ss_pred             cccc--CcccCHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q psy13376        216 QCYN--NHIILEDERRTALEQHMYDVRTETLKDLMVQRERQNALASQRKS  263 (417)
Q Consensus       216 ~~Ld--~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  263 (417)
                      +.|.  ++++..++ ..+.......+..+..++...-...++..++....
T Consensus       329 k~l~~~~n~ln~e~-~~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~  377 (505)
T KOG3207|consen  329 KHLRITLNYLNKET-DTAKLLVIARISQLVKLNDVDISPNERRDAELYYL  377 (505)
T ss_pred             hhhhcccccccccc-cceeEEeeeehhhhhhhcccccChHHhhhhhhhHH
Confidence            7665  44444322 24444455566666666544443444444444433

>KOG0531|consensus

Probab=99.12  E-value=9.6e-12  Score=126.00  Aligned_cols=119  Identities=38%  Similarity=0.529  Sum_probs=79.0

Q ss_pred             cccCCcchhhh-h--cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCC
Q psy13376         60 QESTNLAEKLQ-I--YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL  135 (417)
Q Consensus        60 ~~~n~i~~l~~-l--l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~  135 (417)
                      +..|.|..+.. +  +++++.+++..|.|..+.. +..+++|++|++++|.|+.+.++..++.|+.|++++|.|+.++++
T Consensus        79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~  158 (414)
T KOG0531|consen   79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGL  158 (414)
T ss_pred             cchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCC
Confidence            34444554333 3  6667777777777777766 666777777777777777776666666677777777777777666


Q ss_pred             ccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCccCcchh
Q psy13376        136 DTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLAS  178 (417)
Q Consensus       136 ~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~  178 (417)
                      ..++.|+.+++++|.++.++.  ...+.+++.+++.+|.+..+..
T Consensus       159 ~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~  203 (414)
T KOG0531|consen  159 ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG  203 (414)
T ss_pred             ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc
Confidence            666777777777777766665  4666677777777776665544

>KOG2982|consensus

Probab=99.11  E-value=2.8e-11  Score=112.61  Aligned_cols=189  Identities=22%  Similarity=0.251  Sum_probs=133.2

Q ss_pred             cccccCCcchhhhh------cccccEEEeecCCCCCC-CCc-CCCcccceEeeeCCCCCCcC---CCCCCccCceeeeeC
Q psy13376         58 LLQESTNLAEKLQI------YKLIKAVNLRIKTLRKI-ENL-WMMENLVELDLSMNHIGVIE---NLDQLVCLEKLDLGY  126 (417)
Q Consensus        58 l~~~~n~i~~l~~l------l~~L~~L~Ls~N~i~~i-~~l-~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~  126 (417)
                      +++.+|.|.+.+.+      ++.|+.|+++.|.+... ..+ ....+|+.|-|.+..+..-.   .+..+|.+++|.+|.
T Consensus        76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~  155 (418)
T KOG2982|consen   76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD  155 (418)
T ss_pred             hhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence            34555666555444      66677777777776542 223 34556777777666655332   255666666666666


Q ss_pred             CCCCcc----------c--------------------C-CccccccceeEeecCCCCCcC---CCCCCCCCcEEeccCCc
Q psy13376        127 NRIEQI----------Q--------------------G-LDTLVNLKVLNLKMNRIETIE---GLDHLEKLELFNIAANR  172 (417)
Q Consensus       127 N~l~~l----------~--------------------~-~~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~  172 (417)
                      |.+..+          .                    . ..-+|++..+.+..|.+.+..   ++..++.+..|+|+.|+
T Consensus       156 N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~  235 (418)
T KOG2982|consen  156 NSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANN  235 (418)
T ss_pred             chhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccc
Confidence            633211          1                    0 112477888888888887764   57778888899999999


Q ss_pred             cCcchhhhhhhCCCCcCEEeccCCCCCCCC---CccHHHHhcCCCcccccCcccCHHHHHHHHHHHhhhhhHHHHHh
Q psy13376        173 IQSLASLVYLRRFKHLGRLNIERNPVCDKE---NVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKD  246 (417)
Q Consensus       173 i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~---~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~~~~l~~L~~l~  246 (417)
                      |.+|.++..+.+++.|..|.+++||+.+.-   .-+...++++++++.|+++.++..++...+..|.+....-++..
T Consensus       236 idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~qke~p  312 (418)
T KOG2982|consen  236 IDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSERRFVRYYMSQKELP  312 (418)
T ss_pred             cccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhhHHHHHHHHhhhhhcc
Confidence            999999999999999999999999997632   12334778999999999999999999999999887666543333

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.08  E-value=3.6e-11  Score=116.82  Aligned_cols=29  Identities=10%  Similarity=0.149  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy13376        319 LEVSSKLYEFGTSQHSLRQNEVDEFQAVY  347 (417)
Q Consensus       319 f~~~~~L~~L~Ls~N~l~~l~~~~F~~~~  347 (417)
                      +..+++|+.+++++|.+..-+...+....
T Consensus       274 ~~~~~~L~~l~l~~N~l~~~~~~~~~~~~  302 (319)
T cd00116         274 LAEKESLLELDLRGNKFGEEGAQLLAESL  302 (319)
T ss_pred             HhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence            33446788888888888877766665544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.04  E-value=9.3e-11  Score=113.97  Aligned_cols=184  Identities=24%  Similarity=0.209  Sum_probs=107.1

Q ss_pred             cccccEEEeecCCCCCCC--CcCCC---cccceEeeeCCCCCCcC------CCCCC-ccCceeeeeCCCCCc-----ccC
Q psy13376         72 YKLIKAVNLRIKTLRKIE--NLWMM---ENLVELDLSMNHIGVIE------NLDQL-VCLEKLDLGYNRIEQ-----IQG  134 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~--~l~~l---~~L~~L~Ls~N~l~~l~------~l~~l-~~L~~L~Ls~N~l~~-----l~~  134 (417)
                      +++|+.|++++|.+....  .+..+   ++|++|++++|.++...      .+..+ ++|+.|++++|.++.     +..
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            557888888888776422  13333   44888888888776311      24455 778888888888772     121


Q ss_pred             -CccccccceeEeecCCCCCc------CCCCCCCCCcEEeccCCccCcchh---hhhhhCCCCcCEEeccCCCCCCCCCc
Q psy13376        135 -LDTLVNLKVLNLKMNRIETI------EGLDHLEKLELFNIAANRIQSLAS---LVYLRRFKHLGRLNIERNPVCDKENV  204 (417)
Q Consensus       135 -~~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L~~N~l~~~~~~  204 (417)
                       +..+++|++|++++|.++.-      ..+..+++|++|++++|.+++...   ...+..+++|++|++++|++++....
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence             55566788888888877631      124455678888888887765332   12345677788888888877753221


Q ss_pred             cH--HHHhcCCCcccccCcccCHHHH-HHHHHHHhhhhhHHHHHhHHHHHHHHH
Q psy13376        205 DG--FAIAMVPQLQCYNNHIILEDER-RTALEQHMYDVRTETLKDLMVQRERQN  255 (417)
Q Consensus       205 ~~--~~~~~l~~L~~Ld~~~~~~~~~-~~~~~~~~~~l~~L~~l~~~~~~~~~~  255 (417)
                      ..  ......+.|+.|++..+..... ...-..+......|+.++...+....+
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            00  0111236778777776654211 111122333335555556555555433

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=7.7e-11  Score=118.53  Aligned_cols=161  Identities=24%  Similarity=0.354  Sum_probs=107.9

Q ss_pred             ccccccCCcchhhhh---cc-cccEEEeecCCCCCCC-CcCCCcccceEeeeCCCCCCcCCCC-CCccCceeeeeCCCCC
Q psy13376         57 SLLQESTNLAEKLQI---YK-LIKAVNLRIKTLRKIE-NLWMMENLVELDLSMNHIGVIENLD-QLVCLEKLDLGYNRIE  130 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l---l~-~L~~L~Ls~N~i~~i~-~l~~l~~L~~L~Ls~N~l~~l~~l~-~l~~L~~L~Ls~N~l~  130 (417)
                      .+.+..|.+.+++..   ++ +|+.|++++|.+..++ ++..+++|+.|++++|++++++... .++.|+.|++++|+++
T Consensus       120 ~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         120 SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             EEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc
Confidence            345666666666665   32 6777777777777773 5677777777777777777776543 6677777777777777


Q ss_pred             cccCC-ccccccceeEeecCC-CCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHH
Q psy13376        131 QIQGL-DTLVNLKVLNLKMNR-IETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFA  208 (417)
Q Consensus       131 ~l~~~-~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  208 (417)
                      .+|.. .....|++|.+++|. +..+..+..+.++..+.+.+|++..++.  .+..+++++.|++++|.++.++.     
T Consensus       200 ~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~--~~~~l~~l~~L~~s~n~i~~i~~-----  272 (394)
T COG4886         200 DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE--SIGNLSNLETLDLSNNQISSISS-----  272 (394)
T ss_pred             cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccc--hhccccccceecccccccccccc-----
Confidence            77763 344457777777773 3334456667777777777777666432  44667778888888888887764     


Q ss_pred             HhcCCCcccccCcccC
Q psy13376        209 IAMVPQLQCYNNHIIL  224 (417)
Q Consensus       209 ~~~l~~L~~Ld~~~~~  224 (417)
                      ++.+.+++.|+.+...
T Consensus       273 ~~~~~~l~~L~~s~n~  288 (394)
T COG4886         273 LGSLTNLRELDLSGNS  288 (394)
T ss_pred             ccccCccCEEeccCcc
Confidence            4567777777776654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=1.7e-10  Score=115.96  Aligned_cols=146  Identities=29%  Similarity=0.432  Sum_probs=126.4

Q ss_pred             ccccccccCCcchh-hhh--cccccEEEeecCCCCCCCCcC-CCcccceEeeeCCCCCCcCCC-CCCccCceeeeeCCCC
Q psy13376         55 LLSLLQESTNLAEK-LQI--YKLIKAVNLRIKTLRKIENLW-MMENLVELDLSMNHIGVIENL-DQLVCLEKLDLGYNRI  129 (417)
Q Consensus        55 ~~~l~~~~n~i~~l-~~l--l~~L~~L~Ls~N~i~~i~~l~-~l~~L~~L~Ls~N~l~~l~~l-~~l~~L~~L~Ls~N~l  129 (417)
                      ...+.++.|++..+ .++  +++|+.|++++|+++.++... ..++|+.|++++|+++.+|.. ..+..|++|++++|.+
T Consensus       142 L~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~  221 (394)
T COG4886         142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI  221 (394)
T ss_pred             cccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcc
Confidence            34567888999998 355  999999999999999998855 899999999999999999975 5666799999999954


Q ss_pred             -CcccCCccccccceeEeecCCCCCc-CCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        130 -EQIQGLDTLVNLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       130 -~~l~~~~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                       ..+..+..+.++..+.+++|++..+ ..++.+++++.|++++|.+++++.   +..+.+++.+++++|.+...+.
T Consensus       222 ~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         222 IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             eecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc---ccccCccCEEeccCccccccch
Confidence             4555588899999999999999884 468888999999999999999876   5788999999999999988765

>KOG0531|consensus

Probab=98.99  E-value=7.2e-11  Score=119.63  Aligned_cols=131  Identities=39%  Similarity=0.540  Sum_probs=86.8

Q ss_pred             cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccCCccccccceeEeecC
Q psy13376         72 YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMN  149 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N  149 (417)
                      +..++.+.+..|.|..+.. +..+++|+.|++.+|.|..+.. +..+++|++|++++|.|+.+.++..++.|+.|++++|
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN  150 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccC
Confidence            4455555566666666433 6666677777777777777666 6667777777777777777766666666777777777


Q ss_pred             CCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        150 RIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       150 ~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      .|+.++.+..++.|+.+++++|.++.++... ...+.+++.+++.+|.+..+..
T Consensus       151 ~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~  203 (414)
T KOG0531|consen  151 LISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG  203 (414)
T ss_pred             cchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc
Confidence            7777766666777777777777766665411 3556666777777776666554

>KOG2123|consensus

Probab=98.98  E-value=5.1e-11  Score=109.90  Aligned_cols=119  Identities=27%  Similarity=0.421  Sum_probs=105.7

Q ss_pred             CCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEecc
Q psy13376        115 QLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE  194 (417)
Q Consensus       115 ~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~  194 (417)
                      .+.+.+.|++-++.+.+|.-...++.|+.|.||-|+|+++..+..|++|+.|+|..|.|.++..+.++.++|+|+.|+|.
T Consensus        17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            35567778888888888877788899999999999999998899999999999999999999999999999999999999


Q ss_pred             CCCCCCC--CCccHHHHhcCCCcccccCcccCHHHHHHHHH
Q psy13376        195 RNPVCDK--ENVDGFAIAMVPQLQCYNNHIILEDERRTALE  233 (417)
Q Consensus       195 ~N~l~~~--~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~  233 (417)
                      .||.+.-  +.|+..++..+|+|+.||...+..++.+.|-.
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr  137 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALR  137 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHh
Confidence            9998764  56888999999999999999999888776644

>PLN03210 Resistant to P

Probab=98.94  E-value=2.8e-09  Score=120.92  Aligned_cols=145  Identities=17%  Similarity=0.195  Sum_probs=96.4

Q ss_pred             cccccEEEeecCCCCCCCCcCCC-------------------------------cccceEeeeCCC-CCCcCC-CCCCcc
Q psy13376         72 YKLIKAVNLRIKTLRKIENLWMM-------------------------------ENLVELDLSMNH-IGVIEN-LDQLVC  118 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~l~~l-------------------------------~~L~~L~Ls~N~-l~~l~~-l~~l~~  118 (417)
                      .++|+.|++++|.++.+|....+                               ++|+.|++++|. +..+|. ++++++
T Consensus       724 ~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~  803 (1153)
T PLN03210        724 STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK  803 (1153)
T ss_pred             cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence            56677777777777666542222                               456666666663 445553 677777


Q ss_pred             CceeeeeCC-CCCcccCCccccccceeEeecCC-CCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccC-
Q psy13376        119 LEKLDLGYN-RIEQIQGLDTLVNLKVLNLKMNR-IETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIER-  195 (417)
Q Consensus       119 L~~L~Ls~N-~l~~l~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~-  195 (417)
                      |+.|++++| .++.+|....+++|+.|++++|. +..+|.+  .++|+.|++++|.|+.+|.  .+..+++|+.|++++ 
T Consensus       804 L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP~--si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        804 LEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVPW--WIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             CCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc--ccccCEeECCCCCCccChH--HHhcCCCCCEEECCCC
Confidence            888887775 46667654467777778877753 3444432  3578888888888888775  567888888888887 


Q ss_pred             CCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        196 NPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       196 N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      +.+..++.    ....+++|+.++.+.|.
T Consensus       880 ~~L~~l~~----~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        880 NNLQRVSL----NISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCcCccCc----ccccccCCCeeecCCCc
Confidence            45666654    34566777777777665

syringae 6; Provisional

>KOG0532|consensus

Probab=98.87  E-value=1.2e-10  Score=116.67  Aligned_cols=159  Identities=21%  Similarity=0.302  Sum_probs=117.9

Q ss_pred             cccCCcchhhhh---cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC
Q psy13376         60 QESTNLAEKLQI---YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG  134 (417)
Q Consensus        60 ~~~n~i~~l~~l---l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~  134 (417)
                      +..|.|..+..-   +..|+.++++.|+++.++. ++.++ |+.|-+++|+++.+|. ++.+..|..||.+.|.+.++|.
T Consensus       105 Ly~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps  183 (722)
T KOG0532|consen  105 LYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS  183 (722)
T ss_pred             HHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH
Confidence            444555555433   7777888888888888765 66554 7888888888888874 7777788888888888888876


Q ss_pred             -CccccccceeEeecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcC
Q psy13376        135 -LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMV  212 (417)
Q Consensus       135 -~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l  212 (417)
                       +..+.+|+.|++..|.+..+| .+..+ .|..||++.|+|..+|.  .|++++.|++|-|.+||+..-|. .....+..
T Consensus       184 ql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv--~fr~m~~Lq~l~LenNPLqSPPA-qIC~kGkV  259 (722)
T KOG0532|consen  184 QLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPV--DFRKMRHLQVLQLENNPLQSPPA-QICEKGKV  259 (722)
T ss_pred             HhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecch--hhhhhhhheeeeeccCCCCCChH-HHHhccce
Confidence             788888888888888888876 35544 58889999999999886  67899999999999999988665 12233344


Q ss_pred             CCcccccCccc
Q psy13376        213 PQLQCYNNHII  223 (417)
Q Consensus       213 ~~L~~Ld~~~~  223 (417)
                      .=.++|+..-|
T Consensus       260 HIFKyL~~qA~  270 (722)
T KOG0532|consen  260 HIFKYLSTQAC  270 (722)
T ss_pred             eeeeeecchhc
Confidence            44566666655

>KOG0532|consensus

Probab=98.87  E-value=2.5e-10  Score=114.35  Aligned_cols=100  Identities=24%  Similarity=0.417  Sum_probs=48.5

Q ss_pred             ccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC-CccccccceeEeecCCC
Q psy13376         75 IKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRI  151 (417)
Q Consensus        75 L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~i  151 (417)
                      |+.|-+++|+++.+|. ++..+.|..||.+.|.+..++. ++++.+|+.|.+..|++..+|. +..+ .|..||+|.|+|
T Consensus       145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNki  223 (722)
T KOG0532|consen  145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKI  223 (722)
T ss_pred             ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCce
Confidence            4455555555554443 4444445555555555554443 4445555555555555544443 3322 244455555555


Q ss_pred             CCcC-CCCCCCCCcEEeccCCccCc
Q psy13376        152 ETIE-GLDHLEKLELFNIAANRIQS  175 (417)
Q Consensus       152 ~~l~-~l~~l~~L~~L~Ls~N~i~~  175 (417)
                      +.+| .|..|+.|++|-|.+|.+++
T Consensus       224 s~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  224 SYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             eecchhhhhhhhheeeeeccCCCCC
Confidence            5554 34455555555555555544

>PLN03210 Resistant to P

Probab=98.82  E-value=1.9e-08  Score=114.16  Aligned_cols=157  Identities=15%  Similarity=0.157  Sum_probs=102.9

Q ss_pred             cccccCCcchhhhh--cccccEEEeecCCCCCCCC-cCCCcccceEeeeCC-CCCCcCCCCCCccCceeeeeCCC-CCcc
Q psy13376         58 LLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMN-HIGVIENLDQLVCLEKLDLGYNR-IEQI  132 (417)
Q Consensus        58 l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~l  132 (417)
                      +....+.+..++..  +.+|+.|++++|.+..++. +..+++|+.|+|+++ .++.+|.+..+++|+.|++++|. +..+
T Consensus       594 L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~l  673 (1153)
T PLN03210        594 LRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVEL  673 (1153)
T ss_pred             EEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcccc
Confidence            34455555555544  6677777777777777643 667777777777765 36666777777777777777754 5566


Q ss_pred             cC-CccccccceeEeecC-CCCCcCCCCCCCCCcEEeccCCc-cCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHH
Q psy13376        133 QG-LDTLVNLKVLNLKMN-RIETIEGLDHLEKLELFNIAANR-IQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAI  209 (417)
Q Consensus       133 ~~-~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~N~-i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~  209 (417)
                      |. +..+++|+.|++++| .++.+|...++++|++|++++|. +..+|.     ..++|+.|++++|.+..+|..     
T Consensus       674 p~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~~n~i~~lP~~-----  743 (1153)
T PLN03210        674 PSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD-----ISTNISWLDLDETAIEEFPSN-----  743 (1153)
T ss_pred             chhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc-----ccCCcCeeecCCCcccccccc-----
Confidence            64 677777777777764 56666644467777778777773 333332     235778888888888777651     


Q ss_pred             hcCCCcccccCcccC
Q psy13376        210 AMVPQLQCYNNHIIL  224 (417)
Q Consensus       210 ~~l~~L~~Ld~~~~~  224 (417)
                      ..+++|+.|++..+.
T Consensus       744 ~~l~~L~~L~l~~~~  758 (1153)
T PLN03210        744 LRLENLDELILCEMK  758 (1153)
T ss_pred             ccccccccccccccc
Confidence            145666666665543

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.75  E-value=6.1e-09  Score=75.89  Aligned_cols=54  Identities=31%  Similarity=0.565  Sum_probs=23.4

Q ss_pred             CceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCc
Q psy13376        119 LEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANR  172 (417)
Q Consensus       119 L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~  172 (417)
                      |++|++++|+++.++.  |..+++|++|++++|.++.++  .|.++++|++|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4444444444444442  444444444444444444442  24444444444444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.72  E-value=1.1e-08  Score=74.47  Aligned_cols=59  Identities=24%  Similarity=0.436  Sum_probs=54.5

Q ss_pred             cccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCC
Q psy13376        139 VNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV  198 (417)
Q Consensus       139 ~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l  198 (417)
                      |+|++|++++|+|+.++  .|.++++|++|++++|.++.+++ ..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence            57999999999999997  58999999999999999999987 6789999999999999985

...

>KOG2739|consensus

Probab=98.66  E-value=8.7e-09  Score=94.79  Aligned_cols=119  Identities=22%  Similarity=0.300  Sum_probs=98.4

Q ss_pred             CCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCc---C-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCc
Q psy13376        113 LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETI---E-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHL  188 (417)
Q Consensus       113 l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l---~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L  188 (417)
                      ...+..|+.|++.+..++++..|..+++|++|.++.|.....   + ....+++|++|++++|+|..+..+..++.+++|
T Consensus        39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            345567777788888888888888889999999999954432   2 245569999999999999987777777889999


Q ss_pred             CEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHHHHHHH
Q psy13376        189 GRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTA  231 (417)
Q Consensus       189 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~  231 (417)
                      ..|++..|+.+....|+..++..+|+|++||...+...+...+
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~  161 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPEA  161 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccccc
Confidence            9999999999999999999999999999999999886655443

>KOG1644|consensus

Probab=98.62  E-value=4.5e-08  Score=86.81  Aligned_cols=112  Identities=26%  Similarity=0.276  Sum_probs=64.5

Q ss_pred             ccccCCcchhhhh---cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC-C-CCCccCceeeeeCCCCCccc
Q psy13376         59 LQESTNLAEKLQI---YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN-L-DQLVCLEKLDLGYNRIEQIQ  133 (417)
Q Consensus        59 ~~~~n~i~~l~~l---l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l-~~l~~L~~L~Ls~N~l~~l~  133 (417)
                      .+...+++.++.+   ......++|++|.+..++.|..++.|.+|.+++|+|+.|.+ + ..+++|+.|.|.+|.|..+.
T Consensus        25 ~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~  104 (233)
T KOG1644|consen   25 DLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG  104 (233)
T ss_pred             ccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh
Confidence            3444455555444   55556666666666666666666666666666666666643 2 23455666666666665443


Q ss_pred             ---CCccccccceeEeecCCCCCcCC-----CCCCCCCcEEeccC
Q psy13376        134 ---GLDTLVNLKVLNLKMNRIETIEG-----LDHLEKLELFNIAA  170 (417)
Q Consensus       134 ---~~~~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L~~L~Ls~  170 (417)
                         ++..+|.|++|.+-+|.++.-..     +..+|+|+.||.++
T Consensus       105 dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  105 DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence               35556666666666666655432     45556666666544

>KOG1859|consensus

Probab=98.61  E-value=9.3e-10  Score=112.99  Aligned_cols=119  Identities=23%  Similarity=0.280  Sum_probs=104.3

Q ss_pred             ccccccCCcchhhhh---cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCC--CCccCceeeeeCCCCCc
Q psy13376         57 SLLQESTNLAEKLQI---YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLD--QLVCLEKLDLGYNRIEQ  131 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l---l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~--~l~~L~~L~Ls~N~l~~  131 (417)
                      +...++|.+..++.-   ++.++.|+|++|+++++..+..+++|+.|||++|.++.+|.++  ++ .|+.|.+++|.+++
T Consensus       168 ~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~t  246 (1096)
T KOG1859|consen  168 TASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTT  246 (1096)
T ss_pred             hhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHh
Confidence            445777888877654   8999999999999999999999999999999999999999754  33 49999999999999


Q ss_pred             ccCCccccccceeEeecCCCCCcC---CCCCCCCCcEEeccCCccCcc
Q psy13376        132 IQGLDTLVNLKVLNLKMNRIETIE---GLDHLEKLELFNIAANRIQSL  176 (417)
Q Consensus       132 l~~~~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l  176 (417)
                      +-++.++.+|+.||+++|-|....   .+..+..|+.|+|.+|.+-.-
T Consensus       247 L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  247 LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            999999999999999999988764   567788999999999998653

>KOG1909|consensus

Probab=98.51  E-value=8.3e-08  Score=91.51  Aligned_cols=181  Identities=19%  Similarity=0.157  Sum_probs=127.7

Q ss_pred             cccccEEEeecCCCCC--CCC----cCCCcccceEeeeCCCCCCcCC---------------CCCCccCceeeeeCCCCC
Q psy13376         72 YKLIKAVNLRIKTLRK--IEN----LWMMENLVELDLSMNHIGVIEN---------------LDQLVCLEKLDLGYNRIE  130 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~--i~~----l~~l~~L~~L~Ls~N~l~~l~~---------------l~~l~~L~~L~Ls~N~l~  130 (417)
                      .++|+.++||.|-+..  ++.    +.++..|++|.|.+|.+....+               ...-+.|+++...+|++.
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            5689999999998874  222    6678899999999999875321               345678999999999997


Q ss_pred             cccC------CccccccceeEeecCCCCCcC------CCCCCCCCcEEeccCCccCcchhh---hhhhCCCCcCEEeccC
Q psy13376        131 QIQG------LDTLVNLKVLNLKMNRIETIE------GLDHLEKLELFNIAANRIQSLASL---VYLRRFKHLGRLNIER  195 (417)
Q Consensus       131 ~l~~------~~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~Ls~N~i~~l~~~---~~l~~l~~L~~L~L~~  195 (417)
                      .-+.      |...+.|+.+.++.|.|..-.      ++..+++|++|||++|-++.-.+.   ..+..|++|+.+++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            6652      677789999999999886432      478899999999999988864432   2567788999999999


Q ss_pred             CCCCCCCCccH--HHHhcCCCcccccCcccCHHHHH-HHHHHHhhhhhHHHHHhHHHHHH
Q psy13376        196 NPVCDKENVDG--FAIAMVPQLQCYNNHIILEDERR-TALEQHMYDVRTETLKDLMVQRE  252 (417)
Q Consensus       196 N~l~~~~~~~~--~~~~~l~~L~~Ld~~~~~~~~~~-~~~~~~~~~l~~L~~l~~~~~~~  252 (417)
                      |.+..-..+..  ..-...|+|+.+++..+...... .+-.......+.|..+++..++.
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            99887655322  12334788998887776542211 11122233355566666555554

>KOG1909|consensus

Probab=98.45  E-value=9.8e-08  Score=91.02  Aligned_cols=128  Identities=24%  Similarity=0.218  Sum_probs=67.6

Q ss_pred             cccccEEEeecCCCCCCCC------cCCCcccceEeeeCCCCCCcC------CCCCCccCceeeeeCCCCCccc------
Q psy13376         72 YKLIKAVNLRIKTLRKIEN------LWMMENLVELDLSMNHIGVIE------NLDQLVCLEKLDLGYNRIEQIQ------  133 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~------l~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~N~l~~l~------  133 (417)
                      -+.|+++....|++..-+.      |...+.|+.+.++.|.|..-.      .+..+++|+.|||..|-++.-.      
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            4456666666666655432      445566666666666655221      2556666666666666655322      


Q ss_pred             CCccccccceeEeecCCCCCcCC-------CCCCCCCcEEeccCCccCcchhh---hhhhCCCCcCEEeccCCCCC
Q psy13376        134 GLDTLVNLKVLNLKMNRIETIEG-------LDHLEKLELFNIAANRIQSLASL---VYLRRFKHLGRLNIERNPVC  199 (417)
Q Consensus       134 ~~~~l~~L~~L~Ls~N~i~~l~~-------l~~l~~L~~L~Ls~N~i~~l~~~---~~l~~l~~L~~L~L~~N~l~  199 (417)
                      .++.+++|+.|++++|.++.-..       -...|+|+.|.+.+|.|+.-...   ..+...|.|..|+|++|.+.
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            15555566666666666554321       12345666666666665542110   12334555666666666664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.31  E-value=5.1e-07  Score=61.03  Aligned_cols=38  Identities=47%  Similarity=0.556  Sum_probs=16.0

Q ss_pred             ccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCccc
Q psy13376         96 NLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQ  133 (417)
Q Consensus        96 ~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~  133 (417)
                      +|++|++++|+|+.+++ +++|++|++|++++|+|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            34444444444444444 444444444444444444433

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=6e-07  Score=60.71  Aligned_cols=39  Identities=33%  Similarity=0.537  Sum_probs=21.2

Q ss_pred             ccceeEeecCCCCCcCC-CCCCCCCcEEeccCCccCcchh
Q psy13376        140 NLKVLNLKMNRIETIEG-LDHLEKLELFNIAANRIQSLAS  178 (417)
Q Consensus       140 ~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~Ls~N~i~~l~~  178 (417)
                      +|++|++++|+|+++++ ++.|++|+.|++++|+|+++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            45555555555555554 5555566666666665555544

...

>PLN03150 hypothetical protein; Provisional

Probab=98.25  E-value=1.7e-06  Score=92.07  Aligned_cols=100  Identities=26%  Similarity=0.416  Sum_probs=72.7

Q ss_pred             cceEeeeCCCCC-CcCC-CCCCccCceeeeeCCCCC-cccC-CccccccceeEeecCCCCC-cC-CCCCCCCCcEEeccC
Q psy13376         97 LVELDLSMNHIG-VIEN-LDQLVCLEKLDLGYNRIE-QIQG-LDTLVNLKVLNLKMNRIET-IE-GLDHLEKLELFNIAA  170 (417)
Q Consensus        97 L~~L~Ls~N~l~-~l~~-l~~l~~L~~L~Ls~N~l~-~l~~-~~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  170 (417)
                      ++.|+|++|.++ .+|. +..+++|+.|+|++|.++ .+|. +..+++|+.|+|++|.++. +| .++.+++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            677888888887 3443 778888888888888886 5664 7888888888888888874 44 477888888888888


Q ss_pred             CccCc-chhhhhhhC-CCCcCEEeccCCCC
Q psy13376        171 NRIQS-LASLVYLRR-FKHLGRLNIERNPV  198 (417)
Q Consensus       171 N~i~~-l~~~~~l~~-l~~L~~L~L~~N~l  198 (417)
                      |.++. +|.  .+.. ..++..+++.+|+.
T Consensus       500 N~l~g~iP~--~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPA--ALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcccccCCh--HHhhccccCceEEecCCcc
Confidence            88774 333  2332 34567788888764

>KOG4579|consensus

Probab=98.22  E-value=3.6e-08  Score=82.32  Aligned_cols=104  Identities=22%  Similarity=0.277  Sum_probs=56.2

Q ss_pred             cceEeeeCCCCCCcCC----CCCCccCceeeeeCCCCCcccC-Cc-cccccceeEeecCCCCCcC-CCCCCCCCcEEecc
Q psy13376         97 LVELDLSMNHIGVIEN----LDQLVCLEKLDLGYNRIEQIQG-LD-TLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIA  169 (417)
Q Consensus        97 L~~L~Ls~N~l~~l~~----l~~l~~L~~L~Ls~N~l~~l~~-~~-~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls  169 (417)
                      +..++|+.|++-.++.    +.....|+..+|++|.++++|. |. ..+.++.|+|++|.|+++| .+..++.|+.|+++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            4445555555554431    4444555555666666665553 22 3345566666666666665 35556666666666


Q ss_pred             CCccCcchhhhhhhCCCCcCEEeccCCCCCCCC
Q psy13376        170 ANRIQSLASLVYLRRFKHLGRLNIERNPVCDKE  202 (417)
Q Consensus       170 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~  202 (417)
                      .|.+...+.+  +..+.++-.|+..+|.+..++
T Consensus       109 ~N~l~~~p~v--i~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  109 FNPLNAEPRV--IAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             cCccccchHH--HHHHHhHHHhcCCCCccccCc
Confidence            6666555442  233555556666666555554

>PLN03150 hypothetical protein; Provisional

Probab=98.13  E-value=3.7e-06  Score=89.60  Aligned_cols=100  Identities=32%  Similarity=0.443  Sum_probs=82.7

Q ss_pred             cccEEEeecCCCCCC-CC-cCCCcccceEeeeCCCCC-CcCC-CCCCccCceeeeeCCCCC-cccC-CccccccceeEee
Q psy13376         74 LIKAVNLRIKTLRKI-EN-LWMMENLVELDLSMNHIG-VIEN-LDQLVCLEKLDLGYNRIE-QIQG-LDTLVNLKVLNLK  147 (417)
Q Consensus        74 ~L~~L~Ls~N~i~~i-~~-l~~l~~L~~L~Ls~N~l~-~l~~-l~~l~~L~~L~Ls~N~l~-~l~~-~~~l~~L~~L~Ls  147 (417)
                      .++.|+|++|.++.. +. +..+++|+.|+|++|.++ .+|. +..+++|+.|+|++|+++ .+|. +..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            378899999999854 43 889999999999999998 6664 999999999999999998 5665 8999999999999


Q ss_pred             cCCCCC-cC-CCCC-CCCCcEEeccCCcc
Q psy13376        148 MNRIET-IE-GLDH-LEKLELFNIAANRI  173 (417)
Q Consensus       148 ~N~i~~-l~-~l~~-l~~L~~L~Ls~N~i  173 (417)
                      +|.++. +| .+.. ..++..+++.+|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcc
Confidence            999984 45 2433 34677888888853

>KOG2982|consensus

Probab=98.11  E-value=1.4e-06  Score=81.60  Aligned_cols=156  Identities=18%  Similarity=0.174  Sum_probs=104.0

Q ss_pred             cccccEEEeecCCCCCCCC----cCCCcccceEeeeCCCCCC-cCCC-CCCccCceeeeeCCCCCc--ccC-Cccccccc
Q psy13376         72 YKLIKAVNLRIKTLRKIEN----LWMMENLVELDLSMNHIGV-IENL-DQLVCLEKLDLGYNRIEQ--IQG-LDTLVNLK  142 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~----l~~l~~L~~L~Ls~N~l~~-l~~l-~~l~~L~~L~Ls~N~l~~--l~~-~~~l~~L~  142 (417)
                      .+.++.++|.+|.|++++.    +.++|.|+.|+++.|.+.. |..+ ..+.+|++|-|.+..+..  ... +..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            7889999999999999865    6799999999999999884 3434 366799999999988753  333 77889999


Q ss_pred             eeEeecCCCCCcC----CCCCC-CCCcEEeccCCccCcchhhhh-hhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcc
Q psy13376        143 VLNLKMNRIETIE----GLDHL-EKLELFNIAANRIQSLASLVY-LRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQ  216 (417)
Q Consensus       143 ~L~Ls~N~i~~l~----~l~~l-~~L~~L~Ls~N~i~~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~  216 (417)
                      .|.+|.|.+..+.    ..... +.+++|+...|....|..... -+.+|++..+.+..||+.+...  ......+|.+.
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~--ek~se~~p~~~  227 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS--EKGSEPFPSLS  227 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh--cccCCCCCcch
Confidence            9999999766542    12222 255566666665544443221 2346777777777777765443  12233455555


Q ss_pred             cccCcccCHHHHH
Q psy13376        217 CYNNHIILEDERR  229 (417)
Q Consensus       217 ~Ld~~~~~~~~~~  229 (417)
                      .|++.......+.
T Consensus       228 ~LnL~~~~idswa  240 (418)
T KOG2982|consen  228 CLNLGANNIDSWA  240 (418)
T ss_pred             hhhhcccccccHH
Confidence            5555555444443

>KOG2123|consensus

Probab=98.06  E-value=1.9e-07  Score=86.61  Aligned_cols=100  Identities=27%  Similarity=0.314  Sum_probs=70.5

Q ss_pred             CCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCC---CCCCCCCcEEecc
Q psy13376         93 MMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEG---LDHLEKLELFNIA  169 (417)
Q Consensus        93 ~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~---l~~l~~L~~L~Ls  169 (417)
                      .+.+.+.|++.|+.+++|.-..+|+.|++|.||-|+|+++.++..|++|++|+|..|.|.++..   +.++++|+.|+|.
T Consensus        17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            3456667777777777776667777778888888888777777777788888888887777753   6677788888887


Q ss_pred             CCccCcchh----hhhhhCCCCcCEEe
Q psy13376        170 ANRIQSLAS----LVYLRRFKHLGRLN  192 (417)
Q Consensus       170 ~N~i~~l~~----~~~l~~l~~L~~L~  192 (417)
                      .|.-..-.+    ...++.+|+|+.||
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhcc
Confidence            776443221    12456677777766

>KOG4579|consensus

Probab=98.03  E-value=1.8e-07  Score=78.21  Aligned_cols=129  Identities=19%  Similarity=0.279  Sum_probs=88.7

Q ss_pred             ccccEEEeecCCCCCCCC----cCCCcccceEeeeCCCCCCcCC-C-CCCccCceeeeeCCCCCcccC-CccccccceeE
Q psy13376         73 KLIKAVNLRIKTLRKIEN----LWMMENLVELDLSMNHIGVIEN-L-DQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLN  145 (417)
Q Consensus        73 ~~L~~L~Ls~N~i~~i~~----l~~l~~L~~L~Ls~N~l~~l~~-l-~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~  145 (417)
                      ..+..++|+.+.+-.++.    +.....|+..+|++|.+.++|. | .+++.++.|++++|.|+++|. +..++.|+.|+
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            345567777777776644    4555667777888888888774 3 455678888888888888885 88888888888


Q ss_pred             eecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        146 LKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       146 Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      ++.|.+...+ .+..+.++-.|+..+|.+..++--......+-  ..++..+|+.+-..
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~a--l~~lgnepl~~~~~  163 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPA--LIKLGNEPLGDETK  163 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHH--HHHhcCCcccccCc
Confidence            8888887765 35557788888888888777665212222332  33446667766443

>KOG4658|consensus

Probab=97.99  E-value=6.3e-06  Score=90.34  Aligned_cols=125  Identities=23%  Similarity=0.303  Sum_probs=89.9

Q ss_pred             cccccEEEeecCCCCCCCCcCCCcccceEeeeCCC--CCCcCC--CCCCccCceeeeeCCC-CCcccC-CccccccceeE
Q psy13376         72 YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNH--IGVIEN--LDQLVCLEKLDLGYNR-IEQIQG-LDTLVNLKVLN  145 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~--l~~l~~--l~~l~~L~~L~Ls~N~-l~~l~~-~~~l~~L~~L~  145 (417)
                      ....+.+.+-+|.+..++.-...+.|+.|-+.+|.  +..++.  |..++.|++|||++|. +..+|. ++.+.+|++|+
T Consensus       522 ~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            45667777777777777665566678888888885  666654  7778888888888764 567775 77788888888


Q ss_pred             eecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCC
Q psy13376        146 LKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP  197 (417)
Q Consensus       146 Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~  197 (417)
                      +++..|+.+| +++++..|.+|++..+.-....+ .....+++|++|.+....
T Consensus       602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeeccc
Confidence            8888888887 67888888888888775332222 234557888888876655

>KOG3665|consensus

Probab=97.96  E-value=3.6e-06  Score=89.94  Aligned_cols=129  Identities=19%  Similarity=0.216  Sum_probs=71.9

Q ss_pred             cccccEEEeecCCCCCCCC----cCCCcccceEeeeCCCCCCcC--C-CCCCccCceeeeeCCCCCcccCCcccccccee
Q psy13376         72 YKLIKAVNLRIKTLRKIEN----LWMMENLVELDLSMNHIGVIE--N-LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL  144 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~----l~~l~~L~~L~Ls~N~l~~l~--~-l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L  144 (417)
                      -.+|++|++++...-.-..    -..+|+|+.|.+++-.+..-.  . ..++|+|..||+|+.+++.+.+++.+++|+.|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL  200 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence            3456666666643321111    234666666666665554322  1 45666666777777777666666666666666


Q ss_pred             EeecCCCCCcC---CCCCCCCCcEEeccCCccCcchh-----hhhhhCCCCcCEEeccCCCCCC
Q psy13376        145 NLKMNRIETIE---GLDHLEKLELFNIAANRIQSLAS-----LVYLRRFKHLGRLNIERNPVCD  200 (417)
Q Consensus       145 ~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~-----~~~l~~l~~L~~L~L~~N~l~~  200 (417)
                      .+.+=.+..-.   .+-.+++|++||+|.......+.     ++.-..+|+|+.||.+++.+..
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            66655554432   35566667777776665443321     1122346667777776665543

>KOG3665|consensus

Probab=97.87  E-value=9.2e-06  Score=86.87  Aligned_cols=132  Identities=16%  Similarity=0.153  Sum_probs=100.8

Q ss_pred             CCcchhhhhcccccEEEeecCCCCCCC--C-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCccc---CCc
Q psy13376         63 TNLAEKLQIYKLIKAVNLRIKTLRKIE--N-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ---GLD  136 (417)
Q Consensus        63 n~i~~l~~ll~~L~~L~Ls~N~i~~i~--~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~---~~~  136 (417)
                      +-+.++...+|+|++|.+++-.+..-+  . +.++|+|..||+|+.+++.+.+++.+++|+.|.+.+=.+..-.   .+.
T Consensus       138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF  217 (699)
T KOG3665|consen  138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF  217 (699)
T ss_pred             cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHh
Confidence            334444444999999999997776542  2 6789999999999999999999999999999999888777544   477


Q ss_pred             cccccceeEeecCCCCCcC--------CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEecc
Q psy13376        137 TLVNLKVLNLKMNRIETIE--------GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE  194 (417)
Q Consensus       137 ~l~~L~~L~Ls~N~i~~l~--------~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~  194 (417)
                      .+++|+.||+|...-..-+        .-..+|+|+.||.|++.+..--.-..+..-|+|+.+..-
T Consensus       218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            8999999999987654432        345699999999999988763222334556666666543

>KOG2739|consensus

Probab=97.72  E-value=1.3e-05  Score=74.08  Aligned_cols=101  Identities=25%  Similarity=0.271  Sum_probs=58.8

Q ss_pred             CCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCC---cccC-CccccccceeEeecCCCCCc---CCCCCCCCCcE
Q psy13376         93 MMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIE---QIQG-LDTLVNLKVLNLKMNRIETI---EGLDHLEKLEL  165 (417)
Q Consensus        93 ~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~---~l~~-~~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~  165 (417)
                      .+..|+.|.+.+..++.+..+..+++|+.|.+|.|...   .++. ...+|+|++|++++|+|+.+   +++..+.+|..
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            34455555566666666666666666777777666333   2222 33446777777777776644   34555666777


Q ss_pred             EeccCCccCcchh--hhhhhCCCCcCEEec
Q psy13376        166 FNIAANRIQSLAS--LVYLRRFKHLGRLNI  193 (417)
Q Consensus       166 L~Ls~N~i~~l~~--~~~l~~l~~L~~L~L  193 (417)
                      |++.+|..+.+..  -..|.-+++|+.|+-
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhccccc
Confidence            7777776554322  124556666666654

>KOG4658|consensus

Probab=97.68  E-value=3.4e-05  Score=84.63  Aligned_cols=136  Identities=22%  Similarity=0.227  Sum_probs=109.8

Q ss_pred             CCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCC--CCcccC--CccccccceeEeecCC-CCCcC-C
Q psy13376         83 KTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNR--IEQIQG--LDTLVNLKVLNLKMNR-IETIE-G  156 (417)
Q Consensus        83 N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~--l~~l~~--~~~l~~L~~L~Ls~N~-i~~l~-~  156 (417)
                      .+...++........+...+-+|.+..++.-...+.|++|-+..|.  +..++.  |..+|.|+.|||++|. +..+| .
T Consensus       511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~  590 (889)
T KOG4658|consen  511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS  590 (889)
T ss_pred             cCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence            3445556666778889999999999988765566789999999997  777776  8999999999999764 66777 5


Q ss_pred             CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCccc
Q psy13376        157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHII  223 (417)
Q Consensus       157 l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~  223 (417)
                      ++.+-+|++|++++..|..+|.  .+..+.+|.+|++..+.-....+   .+...+++|++|.+..-
T Consensus       591 I~~Li~LryL~L~~t~I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~---~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  591 IGELVHLRYLDLSDTGISHLPS--GLGNLKKLIYLNLEVTGRLESIP---GILLELQSLRVLRLPRS  652 (889)
T ss_pred             HhhhhhhhcccccCCCccccch--HHHHHHhhheecccccccccccc---chhhhcccccEEEeecc
Confidence            8889999999999999999986  67899999999999876443332   35666899998876544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.66  E-value=8e-05  Score=69.31  Aligned_cols=183  Identities=20%  Similarity=0.170  Sum_probs=131.0

Q ss_pred             cccccEEEeecCCCCCC-C-C----cCCCcccceEeeeCCCCCCcCC--C-------------CCCccCceeeeeCCCCC
Q psy13376         72 YKLIKAVNLRIKTLRKI-E-N----LWMMENLVELDLSMNHIGVIEN--L-------------DQLVCLEKLDLGYNRIE  130 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i-~-~----l~~l~~L~~L~Ls~N~l~~l~~--l-------------~~l~~L~~L~Ls~N~l~  130 (417)
                      +++++..+||.|.|..- + .    +++-+.|.+|.+++|.+..+.+  +             ..-|.|++.....|++.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            78999999999998753 2 2    6788899999999999986642  2             25678999999999998


Q ss_pred             cccC------CccccccceeEeecCCCCCcC-------CCCCCCCCcEEeccCCccCcchhh---hhhhCCCCcCEEecc
Q psy13376        131 QIQG------LDTLVNLKVLNLKMNRIETIE-------GLDHLEKLELFNIAANRIQSLASL---VYLRRFKHLGRLNIE  194 (417)
Q Consensus       131 ~l~~------~~~l~~L~~L~Ls~N~i~~l~-------~l~~l~~L~~L~Ls~N~i~~l~~~---~~l~~l~~L~~L~L~  194 (417)
                      ..+.      +..-.+|+.+.+..|.|..-.       ++..+.+|+.||+.+|-++...+.   ..+..|+.|+.|.+.
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence            7663      444468999999999987431       466788999999999998865441   245678889999999


Q ss_pred             CCCCCCCCC---ccHHHHhcCCCcccccCcccCH--HHHH--HHHHHHhhhhhHHHHHhHHHHHHHH
Q psy13376        195 RNPVCDKEN---VDGFAIAMVPQLQCYNNHIILE--DERR--TALEQHMYDVRTETLKDLMVQRERQ  254 (417)
Q Consensus       195 ~N~l~~~~~---~~~~~~~~l~~L~~Ld~~~~~~--~~~~--~~~~~~~~~l~~L~~l~~~~~~~~~  254 (417)
                      +|-++.-..   ++.+.-...|+|..|-+.+...  ..+.  ....+-...++.|..+...+|++.+
T Consensus       251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            998876543   1223334567777776555432  1111  1334456677778777777777664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.54  E-value=0.00022  Score=59.51  Aligned_cols=115  Identities=17%  Similarity=0.300  Sum_probs=57.7

Q ss_pred             cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCc
Q psy13376         91 LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLE  164 (417)
Q Consensus        91 l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~  164 (417)
                      |..+++|+.+.+.. .+..++.  |.++++|+.+.+.++ +..++.  |..+++++.+.+.+ .+..++  .|..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            66677777777764 5666653  777777888887764 776664  77777788888854 555554  466777888


Q ss_pred             EEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCc
Q psy13376        165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL  215 (417)
Q Consensus       165 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L  215 (417)
                      .+.+..+ +..++. ..+..+ +++.+.+.. .+..++.   ..+..+++|
T Consensus        85 ~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~-~~~~i~~---~~F~~~~~l  128 (129)
T PF13306_consen   85 NIDIPSN-ITEIGS-SSFSNC-NLKEINIPS-NITKIEE---NAFKNCTKL  128 (129)
T ss_dssp             EEEETTT--BEEHT-TTTTT--T--EEE-TT-B-SS-------GGG-----
T ss_pred             ccccCcc-ccEEch-hhhcCC-CceEEEECC-CccEECC---ccccccccC
Confidence            8888665 666655 456666 777777765 4444443   345555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.44  E-value=0.00047  Score=68.81  Aligned_cols=70  Identities=14%  Similarity=0.195  Sum_probs=37.7

Q ss_pred             cccccEEEeecCCCCCCCCcCCCcccceEeeeCC-CCCCcCC-CCCCccCceeeeeCC-CCCcccCCccccccceeEeec
Q psy13376         72 YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMN-HIGVIEN-LDQLVCLEKLDLGYN-RIEQIQGLDTLVNLKVLNLKM  148 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N-~l~~l~~-l~~l~~L~~L~Ls~N-~l~~l~~~~~l~~L~~L~Ls~  148 (417)
                      +.+++.|++++|.++.+|.+  .++|+.|.++++ .++.+|. +  .++|+.|++++| .+..+|     ++|+.|+++.
T Consensus        51 ~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~  121 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLEIKG  121 (426)
T ss_pred             hcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceEEeCC
Confidence            45666666766666666532  234666666653 4445543 2  236666666666 444433     2355555554


Q ss_pred             CC
Q psy13376        149 NR  150 (417)
Q Consensus       149 N~  150 (417)
                      +.
T Consensus       122 n~  123 (426)
T PRK15386        122 SA  123 (426)
T ss_pred             CC
Confidence            44

>KOG2120|consensus

Probab=97.42  E-value=4.6e-06  Score=78.31  Aligned_cols=64  Identities=11%  Similarity=0.104  Sum_probs=31.0

Q ss_pred             CCCCCCcEEeccCCc-cCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        158 DHLEKLELFNIAANR-IQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       158 ~~l~~L~~L~Ls~N~-i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      ..+++|.+|||++|. ++. .-+..+-+++.|++|.++.|..  +++-....+...|.|.+||...|-
T Consensus       310 ~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            345566666666553 333 3334445556666666655432  222112233455666666655443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.38  E-value=0.00021  Score=66.61  Aligned_cols=154  Identities=19%  Similarity=0.197  Sum_probs=101.0

Q ss_pred             cccccEEEeecCCCCCCC------CcCCCcccceEeeeCCCCCC----c--------CCCCCCccCceeeeeCCCCC-cc
Q psy13376         72 YKLIKAVNLRIKTLRKIE------NLWMMENLVELDLSMNHIGV----I--------ENLDQLVCLEKLDLGYNRIE-QI  132 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~------~l~~l~~L~~L~Ls~N~l~~----l--------~~l~~l~~L~~L~Ls~N~l~-~l  132 (417)
                      +..++.++||+|-|..-.      .+.+-.+|+..+++.-....    +        +.+-+||+|+..+||.|.+. ..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            677888899998887521      15556677777776543332    1        12557888888888888875 33


Q ss_pred             cC-----CccccccceeEeecCCCCCcCC---------------CCCCCCCcEEeccCCccCcchhh---hhhhCCCCcC
Q psy13376        133 QG-----LDTLVNLKVLNLKMNRIETIEG---------------LDHLEKLELFNIAANRIQSLASL---VYLRRFKHLG  189 (417)
Q Consensus       133 ~~-----~~~l~~L~~L~Ls~N~i~~l~~---------------l~~l~~L~~L~Ls~N~i~~l~~~---~~l~~l~~L~  189 (417)
                      |.     +++-+.|.+|.+++|.+..+.+               ..+-|.|++.....|++...+..   ..+..-.+|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            32     5666788888888888775531               24557788888888888765441   1233335788


Q ss_pred             EEeccCCCCCCCC--CccHHHHhcCCCcccccCcccCH
Q psy13376        190 RLNIERNPVCDKE--NVDGFAIAMVPQLQCYNNHIILE  225 (417)
Q Consensus       190 ~L~L~~N~l~~~~--~~~~~~~~~l~~L~~Ld~~~~~~  225 (417)
                      .+.+..|.|....  .....-...+.+|+.||+..+.-
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf  226 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF  226 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence            8888888776532  12223445677888888877654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.32  E-value=0.00087  Score=66.97  Aligned_cols=130  Identities=12%  Similarity=0.152  Sum_probs=88.0

Q ss_pred             cccccccCCcchhhhhcccccEEEeec-CCCCCCCCcCCCcccceEeeeCC-CCCCcCCCCCCccCceeeeeCCCCCccc
Q psy13376         56 LSLLQESTNLAEKLQIYKLIKAVNLRI-KTLRKIENLWMMENLVELDLSMN-HIGVIENLDQLVCLEKLDLGYNRIEQIQ  133 (417)
Q Consensus        56 ~~l~~~~n~i~~l~~ll~~L~~L~Ls~-N~i~~i~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l~  133 (417)
                      ..|.++.+.+..++.+.++|++|.+++ +.++.++..- .++|+.|++++| .+..+|     .+|+.|+++.+....++
T Consensus        55 ~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~n~~~~L~  128 (426)
T PRK15386         55 GRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLP-----ESVRSLEIKGSATDSIK  128 (426)
T ss_pred             CEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccc-----cccceEEeCCCCCcccc
Confidence            355678888888886677899999987 5666666521 368999999998 666554     36788888887766554


Q ss_pred             CCccccccceeEeecCCCCCcCCCC-CC-CCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCC
Q psy13376        134 GLDTLVNLKVLNLKMNRIETIEGLD-HL-EKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP  197 (417)
Q Consensus       134 ~~~~l~~L~~L~Ls~N~i~~l~~l~-~l-~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~  197 (417)
                      .+.  ++|+.|.+.+++......+. .+ ++|++|++++|....+|.    .-..+|+.|+++.+.
T Consensus       129 ~LP--ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~----~LP~SLk~L~ls~n~  188 (426)
T PRK15386        129 NVP--NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPE----KLPESLQSITLHIEQ  188 (426)
T ss_pred             cCc--chHhheeccccccccccccccccCCcccEEEecCCCcccCcc----cccccCcEEEecccc
Confidence            432  36788887553311111111 22 589999999988666553    122589999998774

>KOG2120|consensus

Probab=97.22  E-value=3e-05  Score=72.93  Aligned_cols=149  Identities=17%  Similarity=0.156  Sum_probs=109.4

Q ss_pred             ccccEEEeecCCCCCC--CC-cCCCcccceEeeeCCCCCCc-C-CCCCCccCceeeeeCCC-CCcccC---Cccccccce
Q psy13376         73 KLIKAVNLRIKTLRKI--EN-LWMMENLVELDLSMNHIGVI-E-NLDQLVCLEKLDLGYNR-IEQIQG---LDTLVNLKV  143 (417)
Q Consensus        73 ~~L~~L~Ls~N~i~~i--~~-l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~-l~~l~~---~~~l~~L~~  143 (417)
                      +.++.|+|++..|+.-  .. +..+.+|+.|.+.++++.+- - .+.+-.+|+.|+++.+. +++...   +..++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            4589999999888743  22 77889999999999999853 2 37888899999998864 665542   788999999


Q ss_pred             eEeecCCCCCcC---CCCC-CCCCcEEeccCCc----cCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCc
Q psy13376        144 LNLKMNRIETIE---GLDH-LEKLELFNIAANR----IQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL  215 (417)
Q Consensus       144 L~Ls~N~i~~l~---~l~~-l~~L~~L~Ls~N~----i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L  215 (417)
                      |+++.+.+..-.   .+.+ -++|..|++++..    .+.+.-  ..+.+|+|.+|||++|..-...-  ...+.+++.|
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t--L~~rcp~l~~LDLSD~v~l~~~~--~~~~~kf~~L  340 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST--LVRRCPNLVHLDLSDSVMLKNDC--FQEFFKFNYL  340 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH--HHHhCCceeeeccccccccCchH--HHHHHhcchh
Confidence            999998875321   1222 2578889998873    222322  34789999999999985443322  3467789999


Q ss_pred             ccccCcccCH
Q psy13376        216 QCYNNHIILE  225 (417)
Q Consensus       216 ~~Ld~~~~~~  225 (417)
                      ++|.+++|-.
T Consensus       341 ~~lSlsRCY~  350 (419)
T KOG2120|consen  341 QHLSLSRCYD  350 (419)
T ss_pred             eeeehhhhcC
Confidence            9999998864

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.16  E-value=0.0012  Score=55.02  Aligned_cols=111  Identities=18%  Similarity=0.313  Sum_probs=63.8

Q ss_pred             cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeE
Q psy13376         72 YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLN  145 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~  145 (417)
                      .++|+.+.+.. .+..++.  |..+++|+.+.+.++ +..++.  |.+++.++.+.+.+ .+..++.  |..+++|+.+.
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            45678888764 6777754  888989999999885 887764  88888899999976 6766664  88899999999


Q ss_pred             eecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcC
Q psy13376        146 LKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLG  189 (417)
Q Consensus       146 Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~  189 (417)
                      +..+ +..++  .+.++ +|+.+.+.. .+..++. ..|.++++|+
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~-~~F~~~~~l~  129 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE-NAFKNCTKLK  129 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TT-B-SS-----GGG------
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECC-CccEECC-ccccccccCC
Confidence            9775 66664  57777 899999876 5666665 5677777764

>KOG3763|consensus

Probab=96.11  E-value=0.0032  Score=64.14  Aligned_cols=89  Identities=22%  Similarity=0.334  Sum_probs=66.3

Q ss_pred             cccccceeEeecCCCCCcCCC----CCCCCCcEEeccCC--ccCcchhhhhhhCCCCcCEEeccCCCCCCCCCcc----H
Q psy13376        137 TLVNLKVLNLKMNRIETIEGL----DHLEKLELFNIAAN--RIQSLASLVYLRRFKHLGRLNIERNPVCDKENVD----G  206 (417)
Q Consensus       137 ~l~~L~~L~Ls~N~i~~l~~l----~~l~~L~~L~Ls~N--~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~----~  206 (417)
                      +.+.+..++|++|++..+..+    ...|+|..|+|++|  .+.+.+.+..++. ..|+.|.+.|||++.--.++    .
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~tf~~~s~yv~  294 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTTFSDRSEYVS  294 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccchhhhHHHHH
Confidence            456788888999988887654    34578999999999  6666555544443 46999999999998754332    3


Q ss_pred             HHHhcCCCcccccCcccCHH
Q psy13376        207 FAIAMVPQLQCYNNHIILED  226 (417)
Q Consensus       207 ~~~~~l~~L~~Ld~~~~~~~  226 (417)
                      .+...+|+|..||+..+...
T Consensus       295 ~i~~~FPKL~~LDG~ev~~~  314 (585)
T KOG3763|consen  295 AIRELFPKLLRLDGVEVQPE  314 (585)
T ss_pred             HHHHhcchheeecCcccCcc
Confidence            45558999999999888753

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.67  E-value=0.042  Score=28.89  Aligned_cols=13  Identities=46%  Similarity=0.708  Sum_probs=4.1

Q ss_pred             CceeeeeCCCCCc
Q psy13376        119 LEKLDLGYNRIEQ  131 (417)
Q Consensus       119 L~~L~Ls~N~l~~  131 (417)
                      |+.|++++|++++
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            3444444444433

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.63  E-value=0.026  Score=31.78  Aligned_cols=15  Identities=47%  Similarity=0.565  Sum_probs=6.2

Q ss_pred             CceeeeeCCCCCccc
Q psy13376        119 LEKLDLGYNRIEQIQ  133 (417)
Q Consensus       119 L~~L~Ls~N~l~~l~  133 (417)
                      |++|++++|+|+.+|
T Consensus         2 L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIP   16 (22)
T ss_dssp             ESEEEETSSEESEEG
T ss_pred             ccEEECCCCcCEeCC
Confidence            344444444444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.28  E-value=0.099  Score=27.46  Aligned_cols=11  Identities=27%  Similarity=0.673  Sum_probs=3.1

Q ss_pred             CcEEeccCCcc
Q psy13376        163 LELFNIAANRI  173 (417)
Q Consensus       163 L~~L~Ls~N~i  173 (417)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33333333333

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.29  E-value=0.12  Score=28.98  Aligned_cols=16  Identities=31%  Similarity=0.638  Sum_probs=9.3

Q ss_pred             CcEEeccCCccCcchh
Q psy13376        163 LELFNIAANRIQSLAS  178 (417)
Q Consensus       163 L~~L~Ls~N~i~~l~~  178 (417)
                      |++|++++|+|+.+|.
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            5566666666665544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473|consensus

Probab=91.15  E-value=0.0056  Score=56.11  Aligned_cols=82  Identities=17%  Similarity=0.108  Sum_probs=42.4

Q ss_pred             cCCCcccceEeeeCCCCCCcC-CCCCCccCceeeeeCCCCCcccC-CccccccceeEeecCCCCCcC-CCCCCCCCcEEe
Q psy13376         91 LWMMENLVELDLSMNHIGVIE-NLDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFN  167 (417)
Q Consensus        91 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~  167 (417)
                      +..+...+.||++.|++..+. .|..++.+..|+++.|.+..+|. +..+..++.+++..|..+..| +++..+.+++++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            334445555555555555443 25555555555555555555553 444455555555555555554 345555555555


Q ss_pred             ccCCc
Q psy13376        168 IAANR  172 (417)
Q Consensus       168 Ls~N~  172 (417)
                      +-+|.
T Consensus       118 ~k~~~  122 (326)
T KOG0473|consen  118 QKKTE  122 (326)
T ss_pred             hccCc
Confidence            55554

>KOG0473|consensus

Probab=90.97  E-value=0.0067  Score=55.58  Aligned_cols=85  Identities=15%  Similarity=0.161  Sum_probs=56.1

Q ss_pred             CCCCccCceeeeeCCCCCcccC-CccccccceeEeecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCE
Q psy13376        113 LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGR  190 (417)
Q Consensus       113 l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~  190 (417)
                      +......+.||++.|++..+.. |+.++.|..|+++.|.|..+| .++.+..+..+++.+|..+..|-  .++..|.++.
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~--s~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPK--SQKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCc--cccccCCcch
Confidence            4455666677777777666554 666667777777777776665 45666666667777776666554  4566777777


Q ss_pred             EeccCCCCC
Q psy13376        191 LNIERNPVC  199 (417)
Q Consensus       191 L~L~~N~l~  199 (417)
                      +++.+|++.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            777777654

>KOG4308|consensus

Probab=90.87  E-value=0.048  Score=56.25  Aligned_cols=130  Identities=27%  Similarity=0.341  Sum_probs=90.4

Q ss_pred             ccccEEEeecCCCCCCCC------cCCCcccceEeeeCCCCCCcC------CCC----CCccCceeeeeCCCCCccc---
Q psy13376         73 KLIKAVNLRIKTLRKIEN------LWMMENLVELDLSMNHIGVIE------NLD----QLVCLEKLDLGYNRIEQIQ---  133 (417)
Q Consensus        73 ~~L~~L~Ls~N~i~~i~~------l~~l~~L~~L~Ls~N~l~~l~------~l~----~l~~L~~L~Ls~N~l~~l~---  133 (417)
                      ..++.|++..+.++....      +.....++.++++.|.+....      .+.    ...++++|.+++|.++...   
T Consensus       144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~  223 (478)
T KOG4308|consen  144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL  223 (478)
T ss_pred             HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence            345667777787776532      555778888888888875321      133    4678899999999887432   


Q ss_pred             ---CCccccc-cceeEeecCCCCCc------CCCCCC-CCCcEEeccCCccCcchh---hhhhhCCCCcCEEeccCCCCC
Q psy13376        134 ---GLDTLVN-LKVLNLKMNRIETI------EGLDHL-EKLELFNIAANRIQSLAS---LVYLRRFKHLGRLNIERNPVC  199 (417)
Q Consensus       134 ---~~~~l~~-L~~L~Ls~N~i~~l------~~l~~l-~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L~~N~l~  199 (417)
                         .+...+. +..|++.+|++.+.      +.+..+ +.+++++++.|.|++...   ...+..++.++.+.++.|++.
T Consensus       224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence               1445555 77799999988754      235555 678999999999886433   124556778999999999887


Q ss_pred             CCC
Q psy13376        200 DKE  202 (417)
Q Consensus       200 ~~~  202 (417)
                      +..
T Consensus       304 ~~~  306 (478)
T KOG4308|consen  304 DYG  306 (478)
T ss_pred             cHH
Confidence            643

>KOG1947|consensus

Probab=90.81  E-value=0.1  Score=53.29  Aligned_cols=106  Identities=22%  Similarity=0.146  Sum_probs=47.9

Q ss_pred             CcccceEeeeCC-CCCC--cC-CCCCCccCceeeeeCC--CCCccc-----CCccccccceeEeecCC-CCCcC--CC-C
Q psy13376         94 MENLVELDLSMN-HIGV--IE-NLDQLVCLEKLDLGYN--RIEQIQ-----GLDTLVNLKVLNLKMNR-IETIE--GL-D  158 (417)
Q Consensus        94 l~~L~~L~Ls~N-~l~~--l~-~l~~l~~L~~L~Ls~N--~l~~l~-----~~~~l~~L~~L~Ls~N~-i~~l~--~l-~  158 (417)
                      ++.|+.|.+.++ .++.  +. ....+++|+.|+++++  .+...+     ....+++|+.|+++... +++..  .+ .
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            455555555554 2332  21 2445556666666542  111111     12334555566665554 43332  11 1


Q ss_pred             CCCCCcEEeccCCc-cCcchhhhhhhCCCCcCEEeccCCCCC
Q psy13376        159 HLEKLELFNIAANR-IQSLASLVYLRRFKHLGRLNIERNPVC  199 (417)
Q Consensus       159 ~l~~L~~L~Ls~N~-i~~l~~~~~l~~l~~L~~L~L~~N~l~  199 (417)
                      .+++|++|.+.++. +++..-......++.|++|+++++...
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            25556666555554 444222223344555666666655443

>KOG4308|consensus

Probab=88.79  E-value=0.024  Score=58.41  Aligned_cols=153  Identities=21%  Similarity=0.222  Sum_probs=98.7

Q ss_pred             cccccEEEeecCCCCCCC------CcCCC-cccceEeeeCCCCCCcC------CCCCCccCceeeeeCCCCCccc-----
Q psy13376         72 YKLIKAVNLRIKTLRKIE------NLWMM-ENLVELDLSMNHIGVIE------NLDQLVCLEKLDLGYNRIEQIQ-----  133 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~------~l~~l-~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~N~l~~l~-----  133 (417)
                      ..+|..|++++|.+....      .+... ..+++|++..|.++...      .+.....++.++++.|.+....     
T Consensus       114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~  193 (478)
T KOG4308|consen  114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLS  193 (478)
T ss_pred             cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHh
Confidence            667788888888887432      13333 56777888888777543      2556778888888888874221     


Q ss_pred             -CC----ccccccceeEeecCCCCCcC------CCCCCCC-CcEEeccCCccCcchh---hhhhhCC-CCcCEEeccCCC
Q psy13376        134 -GL----DTLVNLKVLNLKMNRIETIE------GLDHLEK-LELFNIAANRIQSLAS---LVYLRRF-KHLGRLNIERNP  197 (417)
Q Consensus       134 -~~----~~l~~L~~L~Ls~N~i~~l~------~l~~l~~-L~~L~Ls~N~i~~l~~---~~~l~~l-~~L~~L~L~~N~  197 (417)
                       .+    ....++++|.++++.++...      .+...+. +..+++..|.+.+...   ...+..+ +.++.++++.|+
T Consensus       194 ~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns  273 (478)
T KOG4308|consen  194 QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNS  273 (478)
T ss_pred             hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCC
Confidence             12    24567888888888877442      2455555 6668888888876421   1233444 567888999998


Q ss_pred             CCCCCCcc-HHHHhcCCCcccccCcccC
Q psy13376        198 VCDKENVD-GFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       198 l~~~~~~~-~~~~~~l~~L~~Ld~~~~~  224 (417)
                      |+....-. ...+..+++++.+.++..+
T Consensus       274 i~~~~~~~L~~~l~~~~~l~~l~l~~n~  301 (478)
T KOG4308|consen  274 ITEKGVRDLAEVLVSCRQLEELSLSNNP  301 (478)
T ss_pred             ccccchHHHHHHHhhhHHHHHhhcccCc
Confidence            88754421 1245566777777766655

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.05  E-value=0.38  Score=27.99  Aligned_cols=17  Identities=29%  Similarity=0.487  Sum_probs=9.6

Q ss_pred             ccCceeeeeCCCCCccc
Q psy13376        117 VCLEKLDLGYNRIEQIQ  133 (417)
Q Consensus       117 ~~L~~L~Ls~N~l~~l~  133 (417)
                      ++|++|+|++|+|+.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            45555555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.05  E-value=0.38  Score=27.99  Aligned_cols=17  Identities=29%  Similarity=0.487  Sum_probs=9.6

Q ss_pred             ccCceeeeeCCCCCccc
Q psy13376        117 VCLEKLDLGYNRIEQIQ  133 (417)
Q Consensus       117 ~~L~~L~Ls~N~l~~l~  133 (417)
                      ++|++|+|++|+|+.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            45555555555555555

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.49  E-value=0.45  Score=28.03  Aligned_cols=16  Identities=50%  Similarity=0.777  Sum_probs=7.5

Q ss_pred             cCceeeeeCCCCCccc
Q psy13376        118 CLEKLDLGYNRIEQIQ  133 (417)
Q Consensus       118 ~L~~L~Ls~N~l~~l~  133 (417)
                      +|+.|++++|+|+.++
T Consensus         3 ~L~~L~L~~NkI~~IE   18 (26)
T smart00365        3 NLEELDLSQNKIKKIE   18 (26)
T ss_pred             ccCEEECCCCccceec
Confidence            4444444444444443

>KOG1947|consensus

Probab=86.22  E-value=0.6  Score=47.60  Aligned_cols=110  Identities=18%  Similarity=0.132  Sum_probs=77.2

Q ss_pred             CCCccCceeeeeCCC-CCc--ccC-CccccccceeEeecC--CCCCcC-----CCCCCCCCcEEeccCCc-cCcchhhhh
Q psy13376        114 DQLVCLEKLDLGYNR-IEQ--IQG-LDTLVNLKVLNLKMN--RIETIE-----GLDHLEKLELFNIAANR-IQSLASLVY  181 (417)
Q Consensus       114 ~~l~~L~~L~Ls~N~-l~~--l~~-~~~l~~L~~L~Ls~N--~i~~l~-----~l~~l~~L~~L~Ls~N~-i~~l~~~~~  181 (417)
                      ..++.|+.|.+..+. +..  +.. ...++.|+.|+++++  .+...+     ....+++|+.|+++++. +++.. +..
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~-l~~  263 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG-LSA  263 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-HHH
Confidence            347888888888773 444  323 667889999999873  222222     24556899999999998 66643 344


Q ss_pred             hh-CCCCcCEEeccCCC-CCCCCCccHHHHhcCCCcccccCcccCHH
Q psy13376        182 LR-RFKHLGRLNIERNP-VCDKENVDGFAIAMVPQLQCYNNHIILED  226 (417)
Q Consensus       182 l~-~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~  226 (417)
                      +. .+++|+.|.+.++. +++..-  ..+...++.|+.|+++.|...
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl--~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGL--VSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHH--HHHHHhcCcccEEeeecCccc
Confidence            44 48999999988777 555433  346677999999999988753

>KOG3763|consensus

Probab=86.00  E-value=0.4  Score=49.35  Aligned_cols=85  Identities=27%  Similarity=0.316  Sum_probs=56.6

Q ss_pred             CCCccCceeeeeCCCCCcccCC----ccccccceeEeecC--CCCCcCCCCC--CCCCcEEeccCCccCcchh--hhhh-
Q psy13376        114 DQLVCLEKLDLGYNRIEQIQGL----DTLVNLKVLNLKMN--RIETIEGLDH--LEKLELFNIAANRIQSLAS--LVYL-  182 (417)
Q Consensus       114 ~~l~~L~~L~Ls~N~l~~l~~~----~~l~~L~~L~Ls~N--~i~~l~~l~~--l~~L~~L~Ls~N~i~~l~~--~~~l-  182 (417)
                      .+.+.+..++|++|++..+..+    ...|+|..|+|++|  .+...+.+..  ...|+.|.+.+|.+.+--.  -.++ 
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~  294 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS  294 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence            3667788889999999888753    35689999999999  5554433322  2358999999999865211  0122 


Q ss_pred             ---hCCCCcCEEeccCCCCCC
Q psy13376        183 ---RRFKHLGRLNIERNPVCD  200 (417)
Q Consensus       183 ---~~l~~L~~L~L~~N~l~~  200 (417)
                         ..+|+|..||  |..+..
T Consensus       295 ~i~~~FPKL~~LD--G~ev~~  313 (585)
T KOG3763|consen  295 AIRELFPKLLRLD--GVEVQP  313 (585)
T ss_pred             HHHHhcchheeec--CcccCc
Confidence               2678887665  554433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.67  E-value=0.62  Score=27.06  Aligned_cols=18  Identities=22%  Similarity=0.462  Sum_probs=9.7

Q ss_pred             CCCcEEeccCCccCcchh
Q psy13376        161 EKLELFNIAANRIQSLAS  178 (417)
Q Consensus       161 ~~L~~L~Ls~N~i~~l~~  178 (417)
                      ++|++|++++|+|+.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            445555555555555544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.67  E-value=0.62  Score=27.06  Aligned_cols=18  Identities=22%  Similarity=0.462  Sum_probs=9.7

Q ss_pred             CCCcEEeccCCccCcchh
Q psy13376        161 EKLELFNIAANRIQSLAS  178 (417)
Q Consensus       161 ~~L~~L~Ls~N~i~~l~~  178 (417)
                      ++|++|++++|+|+.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            445555555555555544

>KOG3864|consensus

Probab=85.09  E-value=0.61  Score=42.11  Aligned_cols=81  Identities=14%  Similarity=0.134  Sum_probs=41.6

Q ss_pred             ccceeEeecCCCCCc--CCCCCCCCCcEEeccCCc-cCcchhhhhhh-CCCCcCEEeccCCCCCCCCCccHHHHhcCCCc
Q psy13376        140 NLKVLNLKMNRIETI--EGLDHLEKLELFNIAANR-IQSLASLVYLR-RFKHLGRLNIERNPVCDKENVDGFAIAMVPQL  215 (417)
Q Consensus       140 ~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls~N~-i~~l~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L  215 (417)
                      .++.++.++..|...  ..+.+++.++.|.+.++. +.++ .+..+. -.++|+.|++++|+-.+...  ...+..+++|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~-~L~~l~~~~~~L~~L~lsgC~rIT~~G--L~~L~~lknL  178 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDW-CLERLGGLAPSLQDLDLSGCPRITDGG--LACLLKLKNL  178 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhH-HHHHhcccccchheeeccCCCeechhH--HHHHHHhhhh
Confidence            355566665555443  245556666666666653 3332 222222 34667777777765332222  2345566666


Q ss_pred             ccccCccc
Q psy13376        216 QCYNNHII  223 (417)
Q Consensus       216 ~~Ld~~~~  223 (417)
                      +.|.+...
T Consensus       179 r~L~l~~l  186 (221)
T KOG3864|consen  179 RRLHLYDL  186 (221)
T ss_pred             HHHHhcCc
Confidence            66655443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.84  E-value=0.72  Score=27.18  Aligned_cols=19  Identities=68%  Similarity=0.777  Sum_probs=13.2

Q ss_pred             cccceEeeeCCCCCCcCCC
Q psy13376         95 ENLVELDLSMNHIGVIENL  113 (417)
Q Consensus        95 ~~L~~L~Ls~N~l~~l~~l  113 (417)
                      ++|+.|++++|+|+.++++
T Consensus         2 ~~L~~L~L~~NkI~~IEnL   20 (26)
T smart00365        2 TNLEELDLSQNKIKKIENL   20 (26)
T ss_pred             CccCEEECCCCccceecCc
Confidence            5677777777777766554

>KOG3864|consensus

Probab=83.75  E-value=0.22  Score=44.86  Aligned_cols=81  Identities=25%  Similarity=0.295  Sum_probs=53.0

Q ss_pred             cCceeeeeCCCCCcc--cCCccccccceeEeecCCC-CCc--CCC-CCCCCCcEEeccCC-ccCcchhhhhhhCCCCcCE
Q psy13376        118 CLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNRI-ETI--EGL-DHLEKLELFNIAAN-RIQSLASLVYLRRFKHLGR  190 (417)
Q Consensus       118 ~L~~L~Ls~N~l~~l--~~~~~l~~L~~L~Ls~N~i-~~l--~~l-~~l~~L~~L~Ls~N-~i~~l~~~~~l~~l~~L~~  190 (417)
                      .++.+|-++..|...  ..+..++.++.|.+.++.- .+.  ..+ ...++|+.|++++| +|++- ++..+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhHH
Confidence            567777777776533  3466777777777766642 111  111 14578999999988 67774 4567788889988


Q ss_pred             EeccCCCCC
Q psy13376        191 LNIERNPVC  199 (417)
Q Consensus       191 L~L~~N~l~  199 (417)
                      |.+.+=+..
T Consensus       181 L~l~~l~~v  189 (221)
T KOG3864|consen  181 LHLYDLPYV  189 (221)
T ss_pred             HHhcCchhh
Confidence            888664433

>KOG4341|consensus

Probab=80.94  E-value=1.2  Score=44.54  Aligned_cols=160  Identities=13%  Similarity=0.020  Sum_probs=90.9

Q ss_pred             cccccEEEeecC-CCCCCCC---cCCCcccceEeeeCCC-CCCcC--C-CCCCccCceeeeeCCC-CCccc--C-Ccccc
Q psy13376         72 YKLIKAVNLRIK-TLRKIEN---LWMMENLVELDLSMNH-IGVIE--N-LDQLVCLEKLDLGYNR-IEQIQ--G-LDTLV  139 (417)
Q Consensus        72 l~~L~~L~Ls~N-~i~~i~~---l~~l~~L~~L~Ls~N~-l~~l~--~-l~~l~~L~~L~Ls~N~-l~~l~--~-~~~l~  139 (417)
                      ...+..+++.++ .+++.+.   -..+..|+.|+.+++. +++..  . -.+.++|+.|-++.++ ++...  . -.+++
T Consensus       267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~  346 (483)
T KOG4341|consen  267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP  346 (483)
T ss_pred             ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence            344555555453 3443332   2345677777777663 33221  2 3456778888887775 33322  1 24566


Q ss_pred             ccceeEeecCCCCCcC----CCCCCCCCcEEeccCCccCcchhhhhh----hCCCCcCEEeccCCCCCCCCCccHHHHhc
Q psy13376        140 NLKVLNLKMNRIETIE----GLDHLEKLELFNIAANRIQSLASLVYL----RRFKHLGRLNIERNPVCDKENVDGFAIAM  211 (417)
Q Consensus       140 ~L~~L~Ls~N~i~~l~----~l~~l~~L~~L~Ls~N~i~~l~~~~~l----~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  211 (417)
                      .|+.+++.......-.    .-.+++.|+.|.++++....-.++..+    ..+..|..+.|+++|......  ...+..
T Consensus       347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~--Le~l~~  424 (483)
T KOG4341|consen  347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT--LEHLSI  424 (483)
T ss_pred             hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH--HHHHhh
Confidence            7888887776543221    234677788888887753322222222    345667778888887765443  334566


Q ss_pred             CCCcccccCcccCHHHHHHHHH
Q psy13376        212 VPQLQCYNNHIILEDERRTALE  233 (417)
Q Consensus       212 l~~L~~Ld~~~~~~~~~~~~~~  233 (417)
                      +++|+.+++-.|....++....
T Consensus       425 c~~Leri~l~~~q~vtk~~i~~  446 (483)
T KOG4341|consen  425 CRNLERIELIDCQDVTKEAISR  446 (483)
T ss_pred             CcccceeeeechhhhhhhhhHH
Confidence            7788877777776655544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	417
1dce_A	567	Crystal Structure Of Rab Geranylgeranyltransferase		6e-06
1ltx_A	567	Structure Of Rab Escort Protein-1 In Complex With R		6e-06
1a9n_A	176	Crystal Structure Of The Spliceosomal U2b''-U2a' Pr		9e-05

>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 567

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 67  EKLQIYKLIKAVN-LRIKTLRKIENLWMMENLV---------ELDLSMNHIGVIENLDQL 116
           E LQ +  +KAV+ +R   L  + + +++EN V          L L+   + V+ +L+QL
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQL 462
Query: 117 VCLEKLDLGYNRIEQIQ-GLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQS 175
           + +  LDL +NR+  +   L             N +E ++G+ +L +L+   +  NR+Q 
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 522
Query: 176 LASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
            A++  L     L  LN++ N +C +E +      M+P +
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562

>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 567

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 67  EKLQIYKLIKAVN-LRIKTLRKIENLWMMENLV---------ELDLSMNHIGVIENLDQL 116
           E LQ +  +KAV+ +R   L  + + +++EN V          L L+   + V+ +L+QL
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQL 462
Query: 117 VCLEKLDLGYNRIEQIQ-GLDTXXXXXXXXXXMNRIETIEGLDHLEKLELFNIAANRIQS 175
           + +  LDL +NR+  +   L             N +E ++G+ +L +L+   +  NR+Q 
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 522
Query: 176 LASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
            A++  L     L  LN++ N +C +E +      M+P +
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562

>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein Complex Bound To A Fragment Of U2 Small Nuclear Rna Length = 176

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 99  ELDLSMNHIGVIENLD-QLVCLEKLDLGYNRIEQIQGLDTXXXXXXXXXXMNRIETI-EG 156
           ELDL    I VIENL   L   + +D   N I ++ G              NRI  I EG
Sbjct: 23  ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEG 82
Query: 157 LDH-LEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL 215
           LD  L  L    +  N +  L  L  L   K L  L I RNPV +K++   + I  VPQ+
Sbjct: 83  LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV 142
Query: 216 QCYNNHIILEDERRTA 231
           +  +   +   ER+ A
Sbjct: 143 RVLDFQKVKLKERQEA 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	417
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-27
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-23
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-22
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-20
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-20
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score =  131 bits (332), Expect = 1e-36
 Identities = 43/194 (22%), Positives = 89/194 (45%), Gaps = 14/194 (7%)

Query: 48  KGVISENLLSLLQESTNL-AEKLQIYKLIKAVNLRIKTLRKIE-NLWMMENLVELDLSMN 105
           K    ++ + + +E  ++ A + +  +L    +  I  + K++  L  ++    L LS N
Sbjct: 3   KATTIKDAIRIFEERKSVVATEAEKVEL----HGMIPPIEKMDATLSTLKACKHLALSTN 58

Query: 106 HIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVN-LKVLNLKMNRIETIEGLDHLEKLE 164
           +I  I +L  +  L  L LG N I++I+ LD + + L+ L +  N+I ++ G++ L  L 
Sbjct: 59  NIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLR 118

Query: 165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDG-------FAIAMVPQLQC 217
           +  ++ N+I +   +  L     L  L +  NP+ +    +          +  +P L+ 
Sbjct: 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178

Query: 218 YNNHIILEDERRTA 231
            +   +  DER  A
Sbjct: 179 LDGMPVDVDEREQA 192

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score =  120 bits (304), Expect = 6e-33
 Identities = 49/173 (28%), Positives = 71/173 (41%), Gaps = 3/173 (1%)

Query: 78  VNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLD-QLVCLEKLDLGYNRIEQIQGLD 136
           V L  + + +           ELDL    I VIENL   L   + +D   N I ++ G  
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 61

Query: 137 TLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
            L  LK L +  NRI  I       L  L    +  N +  L  L  L   K L  L I 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 195 RNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDL 247
           RNPV +K++   + I  VPQ++  +   +   ER+ A +        +  KD+
Sbjct: 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDI 174

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score =  114 bits (286), Expect = 1e-27
 Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 1/185 (0%)

Query: 33  LQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLW 92
            +N   ++   LL +           LQ  + L     +             L       
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 438

Query: 93  MMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNLKMNRI 151
              ++  L L+   + V+ +L+QL+ +  LDL +NR+  +   L  L  L+VL    N +
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498

Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAM 211
           E ++G+ +L +L+   +  NR+Q  A++  L     L  LN++ N +C +E +      M
Sbjct: 499 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

Query: 212 VPQLQ 216
           +P + 
Sbjct: 559 LPSVS 563

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score =  100 bits (252), Expect = 2e-25
 Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 4/157 (2%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHIGVIENL-DQLVCLEKLDLGYNRIEQIQGLDTLV 139
           RI    +      +  LV LD   ++ G IE L  + V LE L L    +  +  L  L 
Sbjct: 13  RIHLELRNRTPAAVRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLP 71

Query: 140 NLKVLNLKMNRIETIEGL--DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
            LK L L  NRI     +  + L  L   N++ N+++ +++L  L++ + L  L++    
Sbjct: 72  KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

Query: 198 VCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQ 234
           V +  +       ++PQL   + +   + E   +  +
Sbjct: 132 VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSDAE 168

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  106 bits (265), Expect = 5e-25
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 11/151 (7%)

Query: 75  IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
           I  +      ++ ++ +  + N+ +L L+ N +  I+ L  L  L  L L  N+I+ +  
Sbjct: 45  IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS 104

Query: 135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
           L  L  LK L+L+ N I  I GL HL +LE   +  N+I  +  L  L     L  L++E
Sbjct: 105 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRL---TKLDTLSLE 161

Query: 195 RNPVCDKENVDGFAIAMVPQLQ---CYNNHI 222
            N + D   + G       +LQ      NHI
Sbjct: 162 DNQISDIVPLAGL-----TKLQNLYLSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  103 bits (258), Expect = 4e-24
 Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 3/138 (2%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           ++ + +L  ++ L  L L  N I  I  L  L  LE L LG N+I  I  L  L  L  L
Sbjct: 99  IKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 158

Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
           +L+ N+I  I  L  L KL+   ++ N I  L +L  L   K+L  L +      +K   
Sbjct: 159 SLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL---KNLDVLELFSQECLNKPIN 215

Query: 205 DGFAIAMVPQLQCYNNHI 222
               + +   ++  +  +
Sbjct: 216 HQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.3 bits (187), Expect = 4e-15
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 11/129 (8%)

Query: 97  LVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEG 156
           + E       I  I   D      K +L    +      + L ++  +    + I++++G
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 60

Query: 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQ 216
           + +L  +    +  N++  +  L  L   K+LG L ++ N + D  ++         +L+
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIKPLTNL---KNLGWLFLDENKIKDLSSLKDL-----KKLK 112

Query: 217 ---CYNNHI 222
                +N I
Sbjct: 113 SLSLEHNGI 121

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  101 bits (253), Expect = 2e-24
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           ++ + +L  ++ L  L L  N I  I  L  L  LE L LG N+I  I  L  L  L  L
Sbjct: 102 VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 161

Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
           +L+ N+I  I  L  L KL+   ++ N I  L +L  L   K+L  L +      +K   
Sbjct: 162 SLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL---KNLDVLELFSQECLNKPIN 218

Query: 205 DGFAIAMVPQLQCYNNHII 223
               + +   ++  +  ++
Sbjct: 219 HQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  101 bits (253), Expect = 2e-24
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 11/151 (7%)

Query: 75  IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
           I  +      ++ ++ +  + N+ +L L+ N +  I+ L  L  L  L L  N+++ +  
Sbjct: 48  IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS 107

Query: 135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
           L  L  LK L+L+ N I  I GL HL +LE   +  N+I  +  L  L     L  L++E
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRL---TKLDTLSLE 164

Query: 195 RNPVCDKENVDGFAIAMVPQLQ---CYNNHI 222
            N + D   + G       +LQ      NHI
Sbjct: 165 DNQISDIVPLAGL-----TKLQNLYLSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.4 bits (165), Expect = 8e-13
 Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLE 164
             I  I + D      K +L    +      + L ++  +    + I++++G+ +L  + 
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVT 71

Query: 165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDG 206
              +  N++  +  L  L   K+LG L ++ N V D  ++  
Sbjct: 72  KLFLNGNKLTDIKPLANL---KNLGWLFLDENKVKDLSSLKD 110

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 95.1 bits (237), Expect = 1e-23
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 5/127 (3%)

Query: 95  ENLVELDLSMNHIGVIE---NLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
            ++ EL L  +     +     D+   LE L      +  I  L  L  LK L L  NR+
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRV 76

Query: 152 ETIEGL--DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAI 209
                +  +    L   N++ N+I+ L+++  L++ ++L  L++    V +  +      
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF 136

Query: 210 AMVPQLQ 216
            ++PQL 
Sbjct: 137 KLLPQLT 143

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 127 NRIEQIQGLDTLVNLKVLNL---KMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLR 183
            RI       T  ++K L L   + N  +     D  E+LE  +     + S+A+L    
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANL---P 61

Query: 184 RFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHI 222
           +   L +L +  N V     V       +  L    N I
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 93.6 bits (233), Expect = 5e-22
 Identities = 28/139 (20%), Positives = 62/139 (44%), Gaps = 4/139 (2%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           +  +  L  +  L EL ++ N +  +  +    CL +L L  N +     L  L NL++L
Sbjct: 75  ISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRDTDSLIHLKNLEIL 133

Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
           +++ N++++I  L  L KLE+ ++  N I +   L  L   K +  +++      ++   
Sbjct: 134 SIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRL---KKVNWIDLTGQKCVNEPVK 190

Query: 205 DGFAIAMVPQLQCYNNHII 223
               + +   ++  +   I
Sbjct: 191 YQPELYITNTVKDPDGRWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 28/159 (17%), Positives = 64/159 (40%), Gaps = 12/159 (7%)

Query: 67  EKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGY 126
                       NL  +++  + +   +  +   +   ++I  +  +     L++L L +
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSH 72

Query: 127 NRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFK 186
           N+I  +  L  L  L+ L++  NR++ + G+     L    +  N ++   SL++L   K
Sbjct: 73  NQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRDTDSLIHL---K 128

Query: 187 HLGRLNIERNPVCDKENVDGFAIAMVPQLQ---CYNNHI 222
           +L  L+I  N +     +         +L+    + N I
Sbjct: 129 NLEILSIRNNKLKSIVMLGFL-----SKLEVLDLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           + ++     + N V+ +L    +  + +  +L  ++  +   + I+ + G+    NLK L
Sbjct: 9   INQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKEL 68

Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
           +L  N+I  +  L  L KLE  ++  NR+++L  +        L RL ++ N + D +++
Sbjct: 69  HLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGI----PSACLSRLFLDNNELRDTDSL 124

Query: 205 DG 206
             
Sbjct: 125 IH 126

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVN 140
           R+K L  I +      L  L L  N +   ++L  L  LE L +  N+++ I  L  L  
Sbjct: 96  RLKNLNGIPSA----CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSK 151

Query: 141 LKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
           L+VL+L  N I    GL  L+K+   ++   +  +      ++    L   N  ++P
Sbjct: 152 LEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEP----VKYQPELYITNTVKDP 204

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 99  ELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLD 158
           E       I  +     L    K +LG   +  +     L  ++  N   + I+++ G+ 
Sbjct: 1   ESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQ 60

Query: 159 HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCY 218
               L+  +++ N+I  L+ L  L     L  L++ RN + +   +    ++   +L   
Sbjct: 61  FFTNLKELHLSHNQISDLSPLKDL---TKLEELSVNRNRLKNLNGIPSACLS---RLFLD 114

Query: 219 NNHI 222
           NN +
Sbjct: 115 NNEL 118

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 92.1 bits (229), Expect = 4e-21
 Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 3/126 (2%)

Query: 75  IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
           I  ++     +  IE +  + NL+ L+L  N I  +  L  L  + +L+L  N ++ +  
Sbjct: 43  ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA 102

Query: 135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
           +  L ++K L+L   +I  +  L  L  L++  +  N+I +++ L  L    +L  L+I 
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL---TNLQYLSIG 159

Query: 195 RNPVCD 200
              V D
Sbjct: 160 NAQVSD 165

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 91.3 bits (227), Expect = 8e-21
 Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           L+ +  +  ++++  LDL+   I  +  L  L  L+ L L  N+I  I  L  L NL+ L
Sbjct: 97  LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL 156

Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
           ++   ++  +  L +L KL       N+I  ++ L  L    +L  ++++ N + D   +
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASL---PNLIEVHLKNNQISDVSPL 213

Query: 205 DGF 207
              
Sbjct: 214 ANT 216

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.0 bits (208), Expect = 2e-18
 Identities = 25/140 (17%), Positives = 58/140 (41%), Gaps = 5/140 (3%)

Query: 83  KTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLK 142
             +  I     + N +++    +++        L  +  L      +  I+G+  L NL 
Sbjct: 7   TAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLI 66

Query: 143 VLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKE 202
            L LK N+I  +  L +L K+    ++ N +++++++  L   + +  L++    + D  
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGL---QSIKTLDLTSTQITDVT 123

Query: 203 NVDGFAIAMVPQLQCYNNHI 222
            + G   + +  L    N I
Sbjct: 124 PLAGL--SNLQVLYLDLNQI 141

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           +  I  L  + NL  L +    +  +  L  L  L  L    N+I  I  L +L NL  +
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEV 200

Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
           +LK N+I  +  L +   L +  +    I +           +L   N+ + P
Sbjct: 201 HLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVF----YNNNLVVPNVVKGP 249

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 18/93 (19%), Positives = 31/93 (33%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           +  +  L  +  L  L    N I  I  L  L  L ++ L  N+I  +  L    NL ++
Sbjct: 163 VSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLA 177
            L    I       +   +    +       +A
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 2/99 (2%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL--DTLVNLK 142
           +  I  L  + NL+E+ L  N I  +  L     L  + L    I        + LV   
Sbjct: 185 ISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244

Query: 143 VLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVY 181
           V+            +         N+  N    + ++ Y
Sbjct: 245 VVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSY 283

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 90.3 bits (225), Expect = 2e-20
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 3/112 (2%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           ++ +  +  + +L  L L+ N I  I  L  L  L       N+I  I  +  +  L  L
Sbjct: 167 VKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSL 226

Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            +  N+I  +  L +L +L    I  N+I  + ++  L     L  LN+  N
Sbjct: 227 KIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDL---TKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.7 bits (208), Expect = 5e-18
 Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 10/151 (6%)

Query: 75  IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
           I  + +  + +  I+ +  + NL  L+L+ N I  I  L  LV L  L +G N+I  I  
Sbjct: 46  ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA 105

Query: 135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
           L  L NL+ L L  + I  I  L +L K+   N+ AN   S  S   L     L  L + 
Sbjct: 106 LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVT 163

Query: 195 RNPVCDKENVDGFAIAMVPQLQ---CYNNHI 222
            + V D   +          L       N I
Sbjct: 164 ESKVKDVTPIANL-----TDLYSLSLNYNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 82.6 bits (205), Expect = 1e-17
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 79  NLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTL 138
              I  +    +L      +   L    +  +   ++L  + KL +   ++  IQG++ L
Sbjct: 9   PAPINQIFPDADL---AEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYL 65

Query: 139 VNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV 198
            NL+ LNL  N+I  I  L +L KL    I  N+I  +++L  L    +L  L +  + +
Sbjct: 66  TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNL---TNLRELYLNEDNI 122

Query: 199 CDKENVDGF 207
            D   +   
Sbjct: 123 SDISPLANL 131

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 79.5 bits (197), Expect = 1e-16
 Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 3/141 (2%)

Query: 56  LSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQ 115
           L+ L    N               L+  ++  +     +E++ +L ++   +  I+ ++ 
Sbjct: 5   LATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEY 64

Query: 116 LVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQS 175
           L  LE L+L  N+I  I  L  LV L  L +  N+I  I  L +L  L    +  + I  
Sbjct: 65  LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD 124

Query: 176 LASLVYLRRFKHLGRLNIERN 196
           ++ L  L     +  LN+  N
Sbjct: 125 ISPLANL---TKMYSLNLGAN 142

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.4 bits (194), Expect = 3e-16
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 5/116 (4%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           +  +  L  +  L  L++  N I  I  +  L  L+ L++G N+I  I  L+ L  L  L
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSL 292

Query: 145 NLKMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV 198
            L  N++     E +  L  L    ++ N I  +  L  L     +   +     +
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL---SKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.9 bits (185), Expect = 4e-15
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 97  LVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEG 156
              L      I  I     L    +  L    +  +   + L ++  L +   ++ +I+G
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG 61

Query: 157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQ 216
           +++L  LE  N+  N+I  ++    L     L  L I  N + D   +    +  + +L 
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDISALQN--LTNLRELY 116

Query: 217 CYNNHI 222
              ++I
Sbjct: 117 LNEDNI 122

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.3 bits (173), Expect = 1e-13
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRI--EQIQGLDTLVNLK 142
           +  I  +  +  L  L++  N I  I  L+ L  L  L L  N++  E ++ +  L NL 
Sbjct: 255 ISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 143 VLNLKMNRIETIEGLDHLEKLELFNIAANRIQ 174
            L L  N I  I  L  L K++  + A   I+
Sbjct: 315 TLFLSQNHITDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 7e-04
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 88  IENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQ 131
           +E +  + NL  L LS NHI  I  L  L  ++  D     I++
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIKK 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 7/169 (4%)

Query: 56  LSLLQESTNLAEKLQIYKLIKAVNLRIKT--LRKIENLWMMENLVELDLSMNHIGVIENL 113
           L  L     + +   +  L     L I +  +  I  L  + NL  L  + N I  I  L
Sbjct: 158 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 217

Query: 114 DQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRI 173
             L  L++L L  N+++ I  L +L NL  L+L  N+I  +  L  L KL    + AN+I
Sbjct: 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 277

Query: 174 QSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHI 222
            +++ L  L     L  L +  N + D   +       +  L  Y N+I
Sbjct: 278 SNISPLAGL---TALTNLELNENQLEDISPISNL--KNLTYLTLYFNNI 321

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 87.3 bits (217), Expect = 7e-19
 Identities = 29/114 (25%), Positives = 53/114 (46%)

Query: 75  IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG 134
           +  +      ++ I+ +  + NL +++ S N +  I  L  L  L  + +  N+I  I  
Sbjct: 48  VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP 107

Query: 135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
           L  L NL  L L  N+I  I+ L +L  L    +++N I  +++L  L   + L
Sbjct: 108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 161

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 87.3 bits (217), Expect = 7e-19
 Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 5/143 (3%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           +  +  L  +  L EL L  N I  I  L  L  L  L+L  N++E I  +  L NL  L
Sbjct: 255 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 314

Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV 204
            L  N I  I  +  L KL+      N++  ++SL  L    ++  L+   N + D   +
Sbjct: 315 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL---TNINWLSAGHNQISDLTPL 371

Query: 205 DGFAIAMVPQLQCYNNHIILEDE 227
                  + QL   +        
Sbjct: 372 ANL--TRITQLGLNDQAWTNAPV 392

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.8 bits (200), Expect = 9e-17
 Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 10/162 (6%)

Query: 45  LSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSM 104
           L    +  +  ++ +   T LAE            L    +    +   ++ +  L    
Sbjct: 3   LGSATITQDTPINQIFTDTALAE-------KMKTVLGKTNVTDTVSQTDLDQVTTLQADR 55

Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLE 164
             I  I+ ++ L  L +++   N++  I  L  L  L  + +  N+I  I  L +L  L 
Sbjct: 56  LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 115

Query: 165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDG 206
              +  N+I  +  L  L    +L RL +  N + D   + G
Sbjct: 116 GLTLFNNQITDIDPLKNL---TNLNRLELSSNTISDISALSG 154

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.3 bits (201), Expect = 6e-17
 Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 12/115 (10%)

Query: 94  MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
           + NL  L+L M +I  + NL  LV LE+L++  N   +I+      L +LK L +  +++
Sbjct: 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

Query: 152 ETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
             IE     GL  L +L L +   N + SL   +     ++L  L++  NP  CD
Sbjct: 255 SLIERNAFDGLASLVELNLAH---NNLSSLPHDL-FTPLRYLVELHLHHNPWNCD 305

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 7e-14
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 94  MENLVELDLS-MNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNR 150
           + +L+ LDL  +  +  I     + L  L+ L+LG   I+ +  L  LV L+ L +  N 
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229

Query: 151 IETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
              I      GL  L+KL + N   +++  +           L  LN+  N
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMN---SQVSLIERNA-FDGLASLVELNLAHN 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 12/112 (10%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
           + +L  L L  N I  IE    + L  L  L+L  N +  I     + L  L+ L L+ N
Sbjct: 98  LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157

Query: 150 RIETI-----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            IE+I       +  L +L+L      +++ ++         +L  LN+   
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGE--LKKLEYISEGA-FEGLFNLKYLNLGMC 206

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 16/106 (15%)

Query: 95  ENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150
            N   L+L  N+I +I+      L  LE L LG N I QI+    + L +L  L L  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 151 IETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
           +  I       L  L +L L N   N I+S+ S      F  +  L
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRN---NPIESIPSYA----FNRVPSL 173

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 119 LEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAAN 171
              L+L  N I+ IQ      L +L+VL L  N I  IE     GL  L  LELF+   N
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD---N 133

Query: 172 RIQSLASLVYLRRFKHLGRLNIERNP 197
            +  + S         L  L +  NP
Sbjct: 134 WLTVIPSGA-FEYLSKLRELWLRNNP 158

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.9 bits (200), Expect = 7e-17
 Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 12/115 (10%)

Query: 94  MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
           + NL  L+L+M ++  I NL  L+ L++LDL  N +  I+      L++L+ L +  ++I
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 152 ETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
           + IE      L  L ++ L +   N +  L   +      HL R+++  NP  C+
Sbjct: 244 QVIERNAFDNLQSLVEINLAH---NNLTLLPHDL-FTPLHHLERIHLHHNPWNCN 294

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 94  MENLVELDLS-MNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNR 150
           + +L  LDL  +  +  I     + L  L  L+L    + +I  L  L+ L  L+L  N 
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH 218

Query: 151 IETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           +  I      GL HL+KL +     ++IQ +         + L  +N+  N
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQ---SQIQVIERNA-FDNLQSLVEINLAHN 265

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.6 bits (168), Expect = 8e-13
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 12/112 (10%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
           + +L  L LS NHI  IE    + L  L  L+L  NR+  I       L  LK L L+ N
Sbjct: 87  LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146

Query: 150 RIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            IE+I       +  L +L+L  +   R+  ++         +L  LN+   
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGEL--KRLSYISEGA-FEGLSNLRYLNLAMC 195

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 10/103 (9%)

Query: 95  ENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150
            N   L+L  N I +I+      L  LE L L  N I  I+    + L NL  L L  NR
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
           + TI      +L KL+   +  N I+S+ S      F  +  L
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYA----FNRIPSL 162

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.2 bits (128), Expect = 7e-08
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 14/105 (13%)

Query: 119 LEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAAN 171
              L+L  N+I+ I+      L +L++L L  N I TIE     GL +L  LELF+   N
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD---N 122

Query: 172 RIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQ 216
           R+ ++ +         L  L +  NP+   E++  +A   +P L+
Sbjct: 123 RLTTIPNGA-FVYLSKLKELWLRNNPI---ESIPSYAFNRIPSLR 163

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.0 bits (185), Expect = 6e-16
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 8/123 (6%)

Query: 85  LRKIENLWMMENLVELDLSMNHIG--VIENLDQLVCLEKLDLGYNRIE--QIQGLDTLVN 140
                 +  + NL  L +    +    I NL  L  L  LD+ ++  +   +  ++TL  
Sbjct: 78  ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 141 LKVLNLKMN-RIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVC 199
           +  ++L  N  I  I  L  L +L+  NI  + +     +        L +L      + 
Sbjct: 138 VNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDF---PKLNQLYAFSQTIG 194

Query: 200 DKE 202
            K+
Sbjct: 195 GKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 84  TLRKIENLWMMENLVELDLSMNHIG--VIENLDQLVCLEKLDLGYN-RIEQIQGLDTLVN 140
           T  KI NL  + +L  LD+S +     ++  ++ L  +  +DL YN  I  I  L TL  
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160

Query: 141 LKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSL 176
           LK LN++ + +    G++   KL      +  I   
Sbjct: 161 LKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.3 bits (178), Expect = 5e-15
 Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 94  MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI-- 151
           M +L  + L+  ++  +  ++    ++ L +          +  L NL+ L +    +  
Sbjct: 43  MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTS 102

Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
           + I  L  L  L L +I+ +       L  +     +  +++  N 
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNH-IGV 109
           ++ + +  L   T+L   L I             L KI  L     +  +DLS N  I  
Sbjct: 100 VTSDKIPNLSGLTSL-TLLDISH----SAHDDSILTKINTL---PKVNSIDLSYNGAITD 151

Query: 110 IENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIE 155
           I  L  L  L+ L++ ++ +   +G++    L  L      I   +
Sbjct: 152 IMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGKK 197

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 14/117 (11%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
           +  L  L L  N +  + +     L  L  L L  NRI  +       L +L  L L  N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 150 RIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
           R+  +       L  L  L LF    N + +L +   L   + L  L +  NP VCD
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFA---NNLSALPTEA-LAPLRALQYLRLNDNPWVCD 240

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 6e-14
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 17/122 (13%)

Query: 79  NLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG-- 134
           N +++++        +  L  L L    +  +       L  L+ L L  N ++ +    
Sbjct: 90  NAQLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 135 LDTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLG 189
              L NL  L L  NRI ++      GL  L++L L     NR+  +        F+ LG
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ---NRVAHVHPHA----FRDLG 201

Query: 190 RL 191
           RL
Sbjct: 202 RL 203

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 18/121 (14%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYN-RIEQIQG--L 135
           RI  +    +     NL  L L  N +  I+      L  LE+LDL  N ++  +     
Sbjct: 43  RISHVPA-ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101

Query: 136 DTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGR 190
             L  L  L+L    ++ +      GL  L+ L L +   N +Q+L        F+ LG 
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD---NALQALPDDT----FRDLGN 154

Query: 191 L 191
           L
Sbjct: 155 L 155

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 8/108 (7%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN-R 150
               + L  N I  +          L  L L  N + +I       L  L+ L+L  N +
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           + +++      L +L   ++    +Q L   +  R    L  L ++ N
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDN 139

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.2 bits (177), Expect = 4e-14
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 13/119 (10%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
           + NL  LDLS NH+  ++      L  LE L L  N I  +     + +  L+ L L  N
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

Query: 150 RIETIE-----GLDHLEKLELFNIAANRIQSL--ASLVYLRRFKHLGRLNIERNP-VCD 200
           +I           + L KL L ++++N+++ L    L  L  +   G L +  NP  CD
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG-LYLHNNPLECD 204

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.0 bits (174), Expect = 9e-14
 Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 14/127 (11%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LD 136
            +  LR       + NL  L LS NH+  I +     +  L  LDL  N +  +      
Sbjct: 50  NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS 109

Query: 137 TLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAANRIQSLAS--LVYLRRFKHLG 189
            L  L+VL L  N I  ++      +  L+KL L     N+I       +    +   L 
Sbjct: 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ---NQISRFPVELIKDGNKLPKLM 166

Query: 190 RLNIERN 196
            L++  N
Sbjct: 167 LLDLSSN 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 119 LEKLDLGYNRIEQIQG---LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRI 173
              LDL +N + +++       L NL  L L  N +  I       +  L   ++++N +
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 174 QSLASLVYLRRFKHLGRLNIERNP 197
            +L   +     + L  L +  N 
Sbjct: 101 HTLDEFL-FSDLQALEVLLLYNNH 123

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
             N+ ELDLS N +  I    L     LE L+L  N + +   L++L  L+ L+L  N +
Sbjct: 33  AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV 92

Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           + +     +E L   N   N I  ++      R +    + +  N
Sbjct: 93  QELLVGPSIETLHAAN---NNISRVSC----SRGQGKKNIYLANN 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ-GLDTLV 139
            I T+   E     + L  L+L  N I  ++       L+ LDL  N++  +     +  
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA 214

Query: 140 NLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
            +  ++L+ N++  I + L   + LE F++  N         +  + + +  +  +   
Sbjct: 215 GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           L +  +L  +  L  LDL+ N++  +        +E L    N I ++         K +
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQELLVGPS---IETLHAANNNISRVS-CSRGQGKKNI 125

Query: 145 NLKMNRIETIEGLD--HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            L  N+I  +  LD     +++  ++  N I ++           L  LN++ N
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 87  KIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLD--TLVNLKVL 144
            ++ L +  ++  L  + N+I  +    +    + + L  N+I  ++ LD      ++ L
Sbjct: 91  YVQELLVGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 145 NLKMNRIETIEG---LDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
           +LK+N I+T+         + LE  N+  N I  +   V   + K L
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL 196

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 109 VIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLE 164
           + +N ++    +   +  + ++Q       +  N+K L+L  N +  I    L    KLE
Sbjct: 5   IKQNGNRY---KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           L N+++N +     L  L     L  L++  N
Sbjct: 62  LLNLSSNVLYETLDLESL---STLRTLDLNNN 90

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.1 bits (177), Expect = 7e-14
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
           NL  L ++  ++  +    +  LV L  L+L YN I  I+G  L  L+ L+ + L   ++
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 152 ETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
             +E      L  L + N++ N++ +L   V      +L  L ++ NP  CD
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESV-FHSVGNLETLILDSNPLACD 335

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.4 bits (170), Expect = 5e-13
 Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 26/157 (16%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LD 136
           RIKTL + +      +L EL+L+ N +  +E    + L  L  L L  NR++ I      
Sbjct: 43  RIKTLNQ-DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101

Query: 137 TLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
            L NL  L++  N+I  +       L +L+ LE+ +   N +  ++       F  L  L
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD---NDLVYISHRA----FSGLNSL 154

Query: 192 ---NIERNPVCDKENVDGFAIAMVPQLQC---YNNHI 222
               +E+  +    ++   A++ +  L      + +I
Sbjct: 155 EQLTLEKCNL---TSIPTEALSHLHGLIVLRLRHLNI 188

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
               LDL  N I  +          LE+L+L  N +  ++    + L NL+ L L+ NR+
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 152 ETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
           + I       L  L   +I+ N+I  L   +  +   +L  L +  N 
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDND 139

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
           +  L  L+LS N I  IE   L +L+ L+++ L   ++  ++      L  L+VLN+  N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 150 RIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVC 199
           ++ T+E      +  LE   + +N +     L+++ R +     N  + P C
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN-RQQPTC 357

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 13/138 (9%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
           + +L +L L   ++  I    L  L  L  L L +  I  I+      L  LKVL +   
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 150 RIETIEGLDHLEKLEL--FNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGF 207
                   + L  L L   +I    + ++  L  +R   +L  LN+  NP+     ++G 
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA-VRHLVYLRFLNLSYNPI---STIEGS 266

Query: 208 AIAMVPQLQC---YNNHI 222
            +  + +LQ        +
Sbjct: 267 MLHELLRLQEIQLVGGQL 284

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 51  ISENLLSLLQESTNLAEKL-----QIYKLIKAVNLRIKTL-------RKIENLWMMENLV 98
           +S NLLS L     + E+L      I  +   VN+ +  L            L     LV
Sbjct: 193 VSYNLLSTLAIPIAV-EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV 251

Query: 99  ELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIE 155
           E+DLS N +  I      ++  LE+L +  NR+  +      +  LKVL+L  N +  +E
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE 311

Query: 156 -GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
                 ++LE   +  N I +L     L     L  L +  N 
Sbjct: 312 RNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHND 350

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 10/105 (9%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
              L  L +S N++  IE+        L+ L L  NR+  +  L  + +L   N+  N +
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL 198

Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            T+     +E+L+  +   N I  +   V       L  L ++ N
Sbjct: 199 STLAIPIAVEELDASH---NSINVVRGPV----NVELTILKLQHN 236

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
           + N   +    + +  +    LD    +E L+L   +IE+I          ++ L +  N
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 150 RIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            I  +      ++  L +  +  N + SL   +       L  L++  N
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI-FHNTPKLTTLSMSNN 151

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 97  LVELDLSMNHIGVIENLDQ--LVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIE 152
             ++ + M    V    +   L   + +    + + ++    LD+   +++LNL   +IE
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 153 TIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            I+     +   ++   +  N I+ L   V  +    L  L +ERN
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLLTVLVLERN 127

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 94  MENLVELDLSMN-HIGVI--ENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKM 148
           + +L  L ++ N        +   +L  L  LDL   ++EQ+     ++L +L+VLN+  
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208

Query: 149 NRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
           N   +++      L  L++ + + N I +            L  LN+ +N   C 
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI----QGLDTLVNLKVLNLKMN 149
           +   L+L  N +  + +   D+L  L KL L  N +       Q      +LK L+L  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 150 RIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            + T+      LE+LE  +   + ++ ++        ++L  L+I   
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 17/156 (10%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
           +S N +  +  +    E+L+        +  +K + +      + NL+ LD+S  H  V 
Sbjct: 85  LSFNGVITMSSNFLGLEQLEHLDF---QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 111 EN--LDQLVCLEKLDLGYNR-IEQIQG--LDTLVNLKVLNLKMNRIETIE-----GLDHL 160
            N   + L  LE L +  N   E         L NL  L+L   ++E +       L  L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 161 EKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           + L + +   N   SL +    +    L  L+   N
Sbjct: 202 QVLNMSH---NNFFSLDTFP-YKCLNSLQVLDYSLN 233

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 10/150 (6%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ--GLD 136
            ++ L    + +    L  LDLS   I  IE+     L  L  L L  N I+ +      
Sbjct: 39  PLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 137 TLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
            L +L+ L      + ++E   + HL+ L+  N+A N IQS     Y     +L  L++ 
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 195 RNPVCDKENVDGFAIAMVPQLQCYNNHIIL 224
            N +   +++    + ++ Q+   N  + L
Sbjct: 158 SNKI---QSIYCTDLRVLHQMPLLNLSLDL 184

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 9/128 (7%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI---QGL 135
            +K + +      + NL+ LD+S  H  V  N   + L  LE L +  N  ++       
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 136 DTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI 193
             L NL  L+L   ++E +     + L  L++ N+A+N+++S+   +   R   L ++ +
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI-FDRLTSLQKIWL 525

Query: 194 ERNP-VCD 200
             NP  C 
Sbjct: 526 HTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 78  VNLRIKTLRKI-ENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG 134
                    KI +NL    +   LDLS N +  + +        L+ LDL    I+ I+ 
Sbjct: 12  YQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 135 --LDTLVNLKVLNLKMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGR 190
               +L +L  L L  N I+++       L  L+        + SL +   +   K L  
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKE 128

Query: 191 LNIERN 196
           LN+  N
Sbjct: 129 LNVAHN 134

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.8 bits (153), Expect = 8e-11
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 94  MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQI----QGLDTLVNLKVLNLKMN 149
           +++L  L  + N  G   +   L  LE LDL  N +       Q      +LK L+L  N
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 150 RIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
            + T+      LE+LE  +   + ++ ++        ++L  L+I    
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 6/107 (5%)

Query: 96  NLVELDLSMNHIGVI-ENLDQLVCLEKLDLGYNRIEQIQG---LDTLVNLKVLNLKMNRI 151
           +L  LDLS N +  +  N   L  LE LD  ++ ++Q+       +L NL  L++     
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 152 ETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
                   + L  LE+  +A N  Q           ++L  L++ + 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 94  MENLVELDLSMNHIGVI---ENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKM 148
           + +L  L ++ N        +   +L  L  LDL   ++EQ+     ++L +L+VLN+  
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 149 NRIETIEG--LDHLEKLELFNIAANRIQ-SLASLVYLRRFKHLGRLNIERNPVC 199
           N+++++     D L  L+   +  N    S   + YL R+ +      + +  C
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 557

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 20/119 (16%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVI---ENLDQLVCLEKLDLGYNRIE-QIQGLDTLVN 140
            + + +  + E +  + +  N++       +L ++  L  L+  YN++E ++    + + 
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354

Query: 141 LKVLNLKMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
           L  LNL  N+I  I        E++E  + A N+++ + ++   +    +  ++   N 
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 17/160 (10%)

Query: 54  NLLSLLQESTNLAEKLQIYKLIKAVNL-----RIKTLRKIENLWMMENLVELDLSMNHI- 107
             +S  Q   +           K   +      +KT     +L  M+ L  L+   N + 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 108 GVIENLDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNRIETI---EGLDHLEK 162
           G +      + L  L+L YN+I +I          ++ L+   N+++ I        +  
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403

Query: 163 LELFNIAANRIQSLASLVY------LRRFKHLGRLNIERN 196
           +   + + N I S+    +        +  ++  +N+  N
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 20/136 (14%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHI---------GVIENLDQLVCLEKLDLGYNRIEQ 131
           ++K +  I +   +  +  +D S N I          +     + + +  ++L  N+I +
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 132 I--QGLDTLVNLKVLNLKMNRIETI---------EGLDHLEKLELFNIAANRIQSLASLV 180
              +   T   L  +NL  N +  I         E   +   L   ++  N++  L+   
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507

Query: 181 YLRRFKHLGRLNIERN 196
                 +L  +++  N
Sbjct: 508 RATTLPYLVGIDLSYN 523

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 18/126 (14%)

Query: 89  ENLWMMENLVELDLSMNHI---------GVIENLDQLVCLEKLDLGYNRIEQIQ---GLD 136
           E       L  ++L  N +            EN      L  +DL +N++ ++       
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510

Query: 137 TLVNLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSLASLVY-----LRRFKHLGR 190
           TL  L  ++L  N          +   L+ F I   R       +      +     L +
Sbjct: 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 191 LNIERN 196
           L I  N
Sbjct: 571 LQIGSN 576

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 23/207 (11%), Positives = 69/207 (33%), Gaps = 34/207 (16%)

Query: 24  STLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIK 83
           S  +     +      ++ D       + ++ ++   +  ++ +  +I      +     
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

Query: 84  TLRKI-ENLWMMENLVELDLSMNHI--------GVIENLDQLVCLEKLDLGYNRIEQIQG 134
            +  + + +  +  L +  +  +             EN +     +  DL ++ ++ +  
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 135 LD---------------TLVNLKVLNLKMNRIETIE----------GLDHLEKLELFNIA 169
           ++                L  ++++N+  NR  + E               EK+++  I 
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 170 ANRIQSLASLVYLRRFKHLGRLNIERN 196
            N +++      L++ K LG L    N
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYN 340

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 89  ENLWMMENLVELDLSMNHI-GVIENLDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLN 145
           E + +  +L +L +  N I  V E +     +  LD+  N    I    +   +   +  
Sbjct: 560 EGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

Query: 146 LKMNRIETIEGLDHLE 161
           L  ++ + I G D L+
Sbjct: 618 LFYDKTQDIRGCDALD 633

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.3 bits (164), Expect = 3e-12
 Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 21/163 (12%)

Query: 51  ISENLLSLLQESTNLAEKL-----QIYKLIKAVNLRIKTLR-------KIENLWMMENLV 98
           +S NLLS L     + E+L      I  +   VN+ +  L+           L     LV
Sbjct: 199 VSYNLLSTLAIPIAV-EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV 257

Query: 99  ELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIE 155
           E+DLS N +  I      ++  LE+L +  NR+  +      +  LKVL+L  N +  +E
Sbjct: 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE 317

Query: 156 -GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
                 ++LE   +  N I +L     L     L  L +  N 
Sbjct: 318 RNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHND 356

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 1e-10
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
              +  L+L+   I  I+         ++KL +G+N I  +       +  L VL L+ N
Sbjct: 74  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133

Query: 150 RIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            + ++      +  KL   +++ N ++ +      +    L  L +  N
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSN 181

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 10/105 (9%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
              L  L +S N++  IE+        L+ L L  NR+  +  L  + +L   N+  N +
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL 204

Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            T+     +E+L+  +   N I  +   V       L  L ++ N
Sbjct: 205 STLAIPIAVEELDASH---NSINVVRGPV----NVELTILKLQHN 242

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 97  LVELDLSMNHIGVIENLDQ--LVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIE 152
             ++ + M    V    +   L   + +    + + ++    LD+   +++LNL   +IE
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 153 TIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            I+     +   ++   +  N I+ L   V  +    L  L +ERN
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLLTVLVLERN 133

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.4 bits (162), Expect = 5e-12
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
             N+ ELDLS N +  I    L     LE L+L  N + +   L++L  L+ L+L  N +
Sbjct: 33  AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV 92

Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           + +     +E L   N   N I  ++      R +    + +  N
Sbjct: 93  QELLVGPSIETLHAAN---NNISRVSC----SRGQGKKNIYLANN 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ-GLDTLV 139
            I T+   E     + L  L+L  N I  ++       L+ LDL  N++  +     +  
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA 214

Query: 140 NLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV 198
            +  ++L+ N++  I + L   + LE F++  N         +  + + +  +  +    
Sbjct: 215 GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274

Query: 199 CDKEN 203
              +N
Sbjct: 275 LTGQN 279

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           L +  +L  +  L  LDL+ N++  +        +E L    N I ++         K +
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQELLVGPS---IETLHAANNNISRVS-CSRGQGKKNI 125

Query: 145 NLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            L  N+I  +         +++  ++  N I ++           L  LN++ N
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 109 VIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLE 164
           + +N ++    +   +  + ++Q       +  N+K L+L  N +  I    L    KLE
Sbjct: 5   IKQNGNRY---KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           L N+++N +     L  L     L  L++  N
Sbjct: 62  LLNLSSNVLYETLDLESL---STLRTLDLNNN 90

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 15/129 (11%)

Query: 94  MENLVELDLSMNHIGVIEN----------LDQLVCLEKLDLGYNRIEQIQG--LDTLVNL 141
           +E L  LDL  N++  +            L  L  L  L+L  N  ++I       L  L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

Query: 142 KVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-V 198
           K+++L +N + T+     ++   L+  N+  N I S+   V+   F++L  L++  NP  
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

Query: 199 CDKENVDGF 207
           C  E++  F
Sbjct: 623 CTCESIAWF 631

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 31/158 (19%), Positives = 66/158 (41%), Gaps = 15/158 (9%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAVNL---RIKTLRKIENLWMMENLVELDLSMNHI 107
           +S +  SL   +      L    L   +NL   +I  +   +    + +L  LDL +N I
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPL-HILNLTKNKISKIES-DAFSWLGHLEVLDLGLNEI 417

Query: 108 GVI---ENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG----LD 158
           G     +    L  + ++ L YN+  Q+       + +L+ L L+   ++ ++       
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477

Query: 159 HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            L  L + +++ N I ++   + L   + L  L+++ N
Sbjct: 478 PLRNLTILDLSNNNIANINDDM-LEGLEKLEILDLQHN 514

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 9/115 (7%)

Query: 91  LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNL 146
                NL EL L  N I  I+N    +   L  LDL +N +          L NL+ L L
Sbjct: 93  FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152

Query: 147 KMNRIETIE----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
             N+I+ ++     +     L+   +++N+I+  +          L  L +    
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQ 206

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 85  LRKIEN--LWMMENLVELDLSMNHIGVI--ENLDQLVCLEKLDLGYNRIEQIQ--GLDTL 138
           + K+E      +  L  L+L  N +  +  +       L +L L  N I++I+       
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 139 VNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSL-ASLVYLRRFKHLGRLNIER 195
            NL  L+L  N + + +      LE L+   ++ N+IQ+L +  + +     L +L +  
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 196 NP 197
           N 
Sbjct: 181 NQ 182

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 10/113 (8%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ----GLDTLVNLKVLNLK 147
            +NL+ LDLS N +   +     QL  L++L L  N+I+ ++     +    +LK L L 
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 148 MNRIETIE--GLDHLEKLELFNIAANRIQSL--ASLVYLRRFKHLGRLNIERN 196
            N+I+         + +L    +   ++       L        +  L++  +
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 16/116 (13%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI-----------QGLDTLVNLK 142
           NL  LDLS N++ V+ N     L  LE   L YN I+ +           + L+   +  
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 143 VLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
             ++ +  +  I+      L+ LE  N+  N I  + S +      +L  L++  +
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNS 363

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 15/146 (10%)

Query: 82  IKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDT 137
           +  L  +  L +  +  +  +S+  +  I++     L CLE L++  N I  I+      
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 138 LVNLKVLNLKMNRIETIE-------GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGR 190
           L+NLK L+L  +              L H   L + N+  N+I  + S        HL  
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHS-PLHILNLTKNKISKIESDA-FSWLGHLEV 409

Query: 191 LNIERNPVCDKENVDGFAIAMVPQLQ 216
           L++  N +   + + G     +  + 
Sbjct: 410 LDLGLNEI--GQELTGQEWRGLENIF 433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 27/152 (17%)

Query: 94  MENLVELDLSMNHIG-----VIENLDQLVCLEKLDLGYNRIEQI-----QGLDTLVNLKV 143
           +  L  L L+   +G      +        +  L L  +++         GL    NL +
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK-WTNLTM 252

Query: 144 LNLKMNRIETI--EGLDHLEKLELFNIAANRIQS--------LASLVYLRRFKHLGRLNI 193
           L+L  N +  +  +    L +LE F +  N IQ         L ++ YL   +   + +I
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 194 ERNPVCDKENVDGFAIAMVPQLQ---CYNNHI 222
               +     +D F+   +  L+     +N I
Sbjct: 313 SLASL---PKIDDFSFQWLKCLEHLNMEDNDI 341

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 6/105 (5%)

Query: 96  NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIET 153
           +    D S   +  + + D    +  L+L +N++ ++          L  L++  N I  
Sbjct: 5   SHEVADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 154 IE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           +E      L  L++ N+  N +  L+         +L  L++  N
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKT-FAFCTNLTELHLMSN 107

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.9 bits (156), Expect = 6e-12
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
            L +++ S N I  IE    +    + ++ L  NR+E +Q      L +LK L L+ NRI
Sbjct: 58  QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117

Query: 152 ETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
             +       L  + L ++  N+I ++A          L  LN+  NP  C+
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNLLANPFNCN 168

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 96  NLVELDLSMNHIGVIE---NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150
              EL L+ N   V+E      +L  L K++   N+I  I+    +    +  + L  NR
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI 193
           +E ++      LE L+   + +NRI  + +      F  L  + +
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDS----FIGLSSVRL 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 1e-11
 Identities = 74/482 (15%), Positives = 145/482 (30%), Gaps = 166/482 (34%)

Query: 27  KNLAQVLQNAPAIIN-------EDLLSKKGVIS-ENLLSLLQESTNLAEKLQIYKLI--- 75
           K++  V +   A ++       +D+   K ++S E +  ++             +L    
Sbjct: 19  KDILSVFE--DAFVDNFDCKDVQDMP--KSILSKEEIDHIIMSKD---AVSGTLRLFWTL 71

Query: 76  -----KAVNLRIKTLRKIENLWMMENLVE--LDLSMNHIGVIENLDQL----VCLEKLDL 124
                + V   ++ + +I   ++M  +       SM     IE  D+L        K ++
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 125 GYNRIEQIQGLDT-LVNLK---------------------VLN--------------LKM 148
             +R++    L   L+ L+                     V                L +
Sbjct: 132 --SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 149 NRIETIEG-LDHLEKLELFNIAAN-------------RIQSLASLVYLRRF----KHLGR 190
               + E  L+ L+KL L+ I  N             RI S+ +   LRR      +   
Sbjct: 190 KNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENC 246

Query: 191 LNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQ 250
           L +  N V + +  + F +       C           +  L          T +   V 
Sbjct: 247 LLVLLN-VQNAKAWNAFNL------SC-----------KILL----------TTRFKQVT 278

Query: 251 RERQNALASQRKSEEKSKAFVENLEGDFLFNVQFENDVEG--QEMLK-----LCTIPTKL 303
                A  +    +  S     + E   L     +   +   +E+L      L  I   +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 304 GRSVAELYNNFKRDFLEVSSKLYEFGTSQHSLRQNEVDEFQAVYRAL------------- 350
            R     ++N+K    +   KL      + SL   E  E++ ++  L             
Sbjct: 338 -RDGLATWDNWKHVNCD---KLTT--IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 351 ------------------KL--KSCHEAVKNKTRYRVHPMLYEI---LSNEEALDDALMN 387
                             KL   S  E    ++   +  +  E+   L NE AL  ++++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 388 SF 389
            +
Sbjct: 452 HY 453

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 42/284 (14%), Positives = 88/284 (30%), Gaps = 99/284 (34%)

Query: 2   DIPTTVDRIKKIGLIKDRAGDESTLKNLA----QVLQNAPAIINEDLLSKKGVISENLLS 57
           D   T D  K +   K     ES+L  L     + + +  ++           I   LLS
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-----IPTILLS 393

Query: 58  LL------QESTNLAEKLQIYKLI----KAVNLRIKTLRKIENLWMMENLVELDLSMNHI 107
           L+       +   +  KL  Y L+    K   + I ++  +E    +EN   L     H 
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYAL-----HR 447

Query: 108 GVIENLDQLVCLEKLD-------------LGYNRIEQIQGLDTLVNLKVLNLKMNRIETI 154
            ++++ +     +  D             +G++                          +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--------------------------L 481

Query: 155 EGLDHLEKLELFNIAANRIQSLASLVYL------RRFKHLGRLNIERNPVCDKENVDGFA 208
           + ++H E++ LF            +V+L      ++ +H          + +        
Sbjct: 482 KNIEHPERMTLF-----------RMVFLDFRFLEQKIRHDSTAWNASGSILN-------- 522

Query: 209 IAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRE 252
              + QL+ Y  +I   D +        Y+     + D + + E
Sbjct: 523 --TLQQLKFYKPYICDNDPK--------YERLVNAILDFLPKIE 556

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 15/129 (11%)

Query: 96  NLVELDLSMNHIGVI--ENLDQLVCLEKLDLGYNRIEQIQ----GLDTLVNLKVLNLKMN 149
            L EL +  N I  +     + L  +  ++LG N ++           +  L  + +   
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 150 RIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGF 207
            I TI       L +L L     N+I  + +   L+   +L +L +  N +     VD  
Sbjct: 182 NITTIPQGLPPSLTELHLDG---NKITKVDAA-SLKGLNNLAKLGLSFNSI---SAVDNG 234

Query: 208 AIAMVPQLQ 216
           ++A  P L+
Sbjct: 235 SLANTPHLR 243

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 21/107 (19%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
           ++NL  L L  N I  I       LV LE+L L  N+++++        L+ L +  N I
Sbjct: 75  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEI 133

Query: 152 ETI-----EGLDHLEKLELFNIAANRIQS----------LASLVYLR 183
             +      GL+ +  +EL     N ++S          +  L Y+R
Sbjct: 134 TKVRKSVFNGLNQMIVVELGT---NPLKSSGIENGAFQGMKKLSYIR 177

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 13/103 (12%)

Query: 95  ENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150
            +   LDL  N I  I++     L  L  L L  N+I +I       LV L+ L L  N+
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
           ++ +       L++L +     N I  +   V    F  L ++
Sbjct: 112 LKELPEKMPKTLQELRVHE---NEITKVRKSV----FNGLNQM 147

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 17/95 (17%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ-GLDTLVNLKVLNLKMNR 150
           + NL +L LS N I  ++N  L     L +L L  N++ ++  GL     ++V+ L  N 
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274

Query: 151 IETIE-----------GLDHLEKLELFNIAANRIQ 174
           I  I                   + LF+   N +Q
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFS---NPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 21/106 (19%)

Query: 85  LRKIEN--LWMMENLVELDLSMNHIGVI-ENLDQLVCLEKLDLGYNRIEQIQG------- 134
           +  ++N  L    +L EL L+ N +  +   L     ++ + L  N I  I         
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287

Query: 135 -LDTLVNLKVLNLKMNRIETIE-------GLDHLEKLELFNIAANR 172
                 +   ++L  N ++  E        +     ++L N    +
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN---YK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 14/85 (16%)

Query: 119 LEKLDLGYNRIEQIQ--GLDTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAAN 171
              LDL  N+I +I+      L NL  L L  N+I  I       L  LE+L L     N
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK---N 110

Query: 172 RIQSLASLVYLRRFKHLGRLNIERN 196
           +++ L   +     K L  L +  N
Sbjct: 111 QLKELPEKM----PKTLQELRVHEN 131

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 12/111 (10%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
            +  LDLS N I  I N  L + V L+ L L  N I  I+     +L +L+ L+L  N +
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 152 ETI-----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
             +     + L  L  L L     N  ++L           L  L +    
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLG---NPYKTLGETSLFSHLTKLQILRVGNMD 160

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 21/159 (13%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNH-IGVIEN--LDQLVCLEKLDLGYNRIEQIQG--L 135
             KTL +      +  L  L +        I+      L  LE+L++  + ++  +   L
Sbjct: 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194

Query: 136 DTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFN--IAANRIQSLASLVY--LRRFK 186
            ++ N+  L L M +   +          +E LEL +  +       L++     L +  
Sbjct: 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 187 HLGRLNIERNPVCDKENVDGFAIAMVPQLQC---YNNHI 222
               + I    +     +    +  +  L       N +
Sbjct: 255 TFRNVKITDESLFQVMKL----LNQISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 18/134 (13%), Positives = 41/134 (30%), Gaps = 33/134 (24%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG------------------- 134
           +L  LDLS N++  + +     L  L  L+L  N  + +                     
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

Query: 135 ---------LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLR 183
                       L  L+ L +  + +++ E   L  ++ +    +   +   L  +  + 
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF-VD 219

Query: 184 RFKHLGRLNIERNP 197
               +  L +    
Sbjct: 220 VTSSVECLELRDTD 233

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 119 LEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAAN 171
           ++ LDL  NRI  I    L   VNL+ L L  N I TIE      L  LE L+L     N
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY---N 110

Query: 172 RIQSLASLVYLRRFKHLGRLNIERNPV 198
            + +L+S    +    L  LN+  NP 
Sbjct: 111 YLSNLSSSW-FKPLSSLTFLNLLGNPY 136

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 14/120 (11%)

Query: 94  MENLVELDLSMNHI----------GVIENLDQLVCLEKLDLGYNRIEQIQGL-DTLVNLK 142
             ++  L+L    +          G   +L +      + +    + Q+  L + +  L 
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280

Query: 143 VLNLKMNRIETIEG--LDHLEKLELFNIAANRIQ-SLASLVYLRRFKHLGRLNIERNPVC 199
            L    N+++++     D L  L+   +  N    S   + YL R+ +      + +  C
Sbjct: 281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 340

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
            L  +DLS N I  +       L  L  L L  N+I ++     + L +L++L L  N+I
Sbjct: 57  KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116

Query: 152 ETI-EGL-DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
             +       L  L L ++  N++Q++A        + +  +++ +NP +CD
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT-FSPLRAIQTMHLAQNPFICD 167

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 95  ENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150
           E + E+ L  N I VI          L ++DL  N+I ++       L +L  L L  N+
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLN 192
           I  +     + L  L+L  + AN+I  L        F+ L  LN
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDA----FQDLHNLN 131

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 95  ENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150
             +  LDLS N I  I +  L     L+ L L  +RI  I+G    +L +L+ L+L  N 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 151 IETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           + ++       L  L+  N+  N  Q+L          +L  L I   
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNRI 151
           NL  L L  + I  IE      L  LE LDL  N +  +       L +LK LNL  N  
Sbjct: 51  NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110

Query: 152 ETIE------GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           +T+        L +L+ L + N        +  +        L  L I+  
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGN--VETFSEIRRID-FAGLTSLNELEIKAL 158

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 12/153 (7%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
           IS N    + +S    EK++       +NL    +R ++     + L  LD+S N++   
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRF------LNLSSTGIRVVKTCIP-QTLEVLDVSNNNLDSF 446

Query: 111 ENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNI 168
                L  L++L +  N+++ +        L V+ +  N+++++     D L  L+   +
Sbjct: 447 SL--FLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504

Query: 169 AANRIQ-SLASLVYLRRFKHLGRLNIERNPVCD 200
             N    S   + YL R+ +      + +  C 
Sbjct: 505 HTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS 537

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 30/133 (22%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG-----LDTLVNLKVLNL 146
           +E +  + +  + + ++       L  LE LDL  N + +             +L+ L L
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

Query: 147 KMNRIETIEG----LDHLEKLELFNIAANRIQS-------LASLVYLR------------ 183
             N + +++     L  L+ L   +I+ N              + +L             
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC 428

Query: 184 RFKHLGRLNIERN 196
             + L  L++  N
Sbjct: 429 IPQTLEVLDVSNN 441

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 9/112 (8%)

Query: 94  MENLVELDLSMNHIGVIEN---LDQLVCLEKLDLG-YNRIEQIQG--LDTLVNLKVLNLK 147
           + +L  L+L  N    +        L  L+ L +G      +I+      L +L  L +K
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 148 MNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
              +   +   L  +  +    +  +    L  +        +  L +    
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF-ADILSSVRYLELRDTN 207

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 119 LEKLDLGYNRIEQIQ--GLDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQ 174
           ++ LDL +N+I  I    L    NL+VL LK +RI TIEG     L  LE  +++ N + 
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 175 SLASLVYLRRFKHLGRLNIERNP 197
           SL+S         L  LN+  NP
Sbjct: 88  SLSSSW-FGPLSSLKYLNLMGNP 109

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 16/151 (10%), Positives = 51/151 (33%), Gaps = 10/151 (6%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
           +  N    L  ++       +  L          +R+  +   + +L EL++    +   
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRNY 163

Query: 111 EN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-----GLDHLE 161
           ++  L  +  +  L L  +    +     D L +++ L L+   +   +       +   
Sbjct: 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223

Query: 162 KLELFNIAANRIQSLASLVYLRRFKHLGRLN 192
            ++      + +   +    L+  +++  L+
Sbjct: 224 PMKKLAFRGSVLTDESFNELLKLLRYILELS 254

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
            L  LDLS   I  IE+     L  L  L L  N I+ +       L +L+ L      +
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 152 ETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            ++E   + HL+ L+  N+A N IQS     Y     +L  L++  N
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 16/105 (15%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
           +   LDLS N +  + +        L+ LDL    I+ I+     +L +L  L L  N I
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 152 ETI-----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
           +++      GL  L+KL         + SL +        HL  L
Sbjct: 89  QSLALGAFSGLSSLQKLVAVE---TNLASLENFP----IGHLKTL 126

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 6e-10
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 17/106 (16%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
           +L  L L+ N I  +       L  L+KL      +  ++   +  L  LK LN+  N I
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 152 ETIE------GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
           ++ +       L +LE L+L +   N+IQS+         + L ++
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSS---NKIQSIYCTD----LRVLHQM 175

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 17/114 (14%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG---LDTLVNLKVLNLKMNR 150
           +L +L     ++  +EN  +  L  L++L++ +N I+  +       L NL+ L+L  N+
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 151 IETIEG--LDHLEKLELFN----IAANRIQSLASLVYLRRFK--HLGRLNIERN 196
           I++I    L  L ++ L N    ++ N +  +        FK   L  L ++ N
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----FKEIRLKELALDTN 210

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 96  NLVELDLSMNHI-----GVIENLDQLVCLE-KLDLGYNRIEQIQ-GLDTLVNLKVLNLKM 148
           NL  LDLS N I       +  L Q+  L   LDL  N +  IQ G    + LK L L  
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209

Query: 149 NRIETIEG--LDHLEKLELFNIAANRIQ-SLASLVYLRRFKHLGRLNIERNPVCDKEN 203
           N+++++     D L  L+   +  N    S   + YL R+ +      + +  C    
Sbjct: 210 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 267

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 6/150 (4%)

Query: 45  LSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSM 104
           L       E  L + + S             +       +   I     + N+  + L+ 
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD-IVKFHCLANVSAMSLAG 294

Query: 105 NHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLE 164
             I  +E++ +    + L +   +++Q   LD L  LK L L MN+         L  L 
Sbjct: 295 VSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD-LPFLKSLTLTMNKGSISFKKVALPSLS 353

Query: 165 LFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
             +++ N +           +  LG  ++ 
Sbjct: 354 YLDLSRNALSFSGCCS----YSDLGTNSLR 379

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 94  MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ----GLDTLVNLKVLNLKMN 149
           +  L  L L+MN   +      L  L  LDL  N +              +L+ L+L  N
Sbjct: 327 LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 150 RIETIEG-LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
               +      LE+L+  +   + ++ +         + L  L+I   
Sbjct: 387 GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 11/153 (7%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
           +S N   ++  +    E+LQ        +  +K + +      +E L+ LD+S  +  + 
Sbjct: 383 LSFNGAIIMSANFMGLEELQHLDF---QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 111 EN--LDQLVCLEKLDLGYNRIEQI---QGLDTLVNLKVLNLKMNRIETIEG--LDHLEKL 163
            +     L  L  L +  N  +            NL  L+L   ++E I     D L +L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499

Query: 164 ELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           +L N++ N +  L S     +   L  L+   N
Sbjct: 500 QLLNMSHNNLLFLDSSH-YNQLYSLSTLDCSFN 531

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 11/94 (11%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ---GLDTLVNLKVLNLKMNR 150
           +L  L      +  +E+  + QL+ L+KL++ +N I   +       L NL  ++L  N 
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164

Query: 151 IETI--EGLDHLEKLELF----NIAANRIQSLAS 178
           I+TI    L  L +        +++ N I  +  
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 6e-11
 Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQI--QGLDTL 138
            ++      +L  M  L  LD   N +  +E     V L  L L YN+IE+I        
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618

Query: 139 VNLKVLNLKMNRIETI---EGLDHLEKLELFNIAANRIQSL----ASLVYLRRFKHLGRL 191
             ++ L    N+++ I        +  +   + + N+I S     +  +   +  +   +
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 192 NIERN 196
            +  N
Sbjct: 679 TLSYN 683

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 18/134 (13%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHIGVIE-------NLDQLVCLEKLDLGYNRIEQI- 132
           ++K +  I N   +  +  +D S N IG          +  + +    + L YN I++  
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689

Query: 133 -QGLDTLVNLKVLNLKMNRIETI---------EGLDHLEKLELFNIAANRIQSLASLVYL 182
            +   T   +  + L  N + +I             +   L   ++  N++ SL+     
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749

Query: 183 RRFKHLGRLNIERN 196
               +L  +++  N
Sbjct: 750 TTLPYLSNMDVSYN 763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 27/162 (16%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLS-MNHIGV 109
            + +  +    + +  +    Y                 NL   ++L +++L    ++  
Sbjct: 455 FANSPFTYDNIAVDWEDANSDY-----AKQYENEELSWSNL---KDLTDVELYNCPNMTQ 506

Query: 110 I-ENLDQLVCLEKLDLGYNRIEQI-----------QGLDTLVNLKVLNLKMNRIETI--- 154
           + + L  L  L+ L++  NR                  DT   +++  +  N +E     
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566

Query: 155 EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
             L  + KL L +   N+++ L +         L  L ++ N
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLEAFGTN---VKLTDLKLDYN 605

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 25/203 (12%), Positives = 53/203 (26%), Gaps = 42/203 (20%)

Query: 33  LQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLW 92
              +  +  ++ L+            +       +  Q    +   +L    + +   + 
Sbjct: 359 ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR---LNLSDLLQDAINRNPEMK 415

Query: 93  MMENLVELDLSMNHIGVIEN--------LDQLVCLEKLDLGYNRIEQI------------ 132
            ++    + L    IG + N        + +L  L+ +    +                 
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475

Query: 133 ---------QGLDTLVNLKVLNLKMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVY 181
                         L +L  + L      T   + L  L +L+  NIA NR  S A L  
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 182 --------LRRFKHLGRLNIERN 196
                         +    +  N
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYN 558

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 11/98 (11%), Positives = 30/98 (30%), Gaps = 11/98 (11%)

Query: 89  ENLWMMENLVELDLSMNHI-------GVI-ENLDQLVCLEKLDLGYNRIEQIQGLDTLVN 140
                   L    +                  +     L +L +G N I ++        
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD-EKLTPQ 828

Query: 141 LKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSL 176
           L +L++  N   +I+   +    +  ++ +  ++ Q +
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 17/168 (10%)

Query: 94  MENLVELDLSMNHIGVI---ENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKM 148
           +++L  L +     G++        L  L  L L YN+  Q++    + L NL+VL L  
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112

Query: 149 NRIETI-------EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV-CD 200
             ++         + L  LE L L +   N I+ +    +    +    L++  N V   
Sbjct: 113 CNLDGAVLSGNFFKPLTSLEMLVLRD---NNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169

Query: 201 KENV-DGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDL 247
            E     F       L+  +  +   +E     E+     +  ++  L
Sbjct: 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.8 bits (145), Expect = 6e-10
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 7/115 (6%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
           +L++L+LS N +G I++   + L  LE LDL YN I  +       L NLK L L  N++
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

Query: 152 ETIEG--LDHLEKLELFNIAANRIQ-SLASLVYLRRFKHLGRLNIERNPVCDKEN 203
           +++     D L  L+   +  N    S   + YL R+ +      + +  C    
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 438

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 25/123 (20%)

Query: 84  TLRKIENLWMMEN-LVELDLSMNHIGVIENLDQLVC-------LEKLDLGYNRIEQIQG- 134
              KI++L +  +  +            ++ D           ++  DL  ++I  +   
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHT---NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293

Query: 135 -LDTLVNLKVLNLKMNRIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
                 +L+ L L  N I  I+     GL HL KL L     N + S+ S +    F++L
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ---NFLGSIDSRM----FENL 346

Query: 189 GRL 191
            +L
Sbjct: 347 DKL 349

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 119 LEKLDLGYNRIEQIQ--GLDTLVNLKVLNLKMNRIETI---EGLDHLEKLELFNIAANRI 173
           +  +DL  N I ++       L +L+ L ++      +        L  L +  +  N+ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 174 QSLASLVYLRRFKHLGRLNIERN 196
             L +        +L  L + + 
Sbjct: 92  LQLETGA-FNGLANLEVLTLTQC 113

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 12/117 (10%)

Query: 94  MENLVELDLSMNHI-----GVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNL 146
           +  L  L+L  NH          +L  L  LE L L +  +  I      +L  +  ++L
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 147 KMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
             NR+ +   E L HL+ + L N+A+N I  +   + L        +N+ +NP  C 
Sbjct: 508 SHNRLTSSSIEALSHLKGIYL-NLASNHISIILPSL-LPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 94  MENLVELDLSMNHIGVIEN---LDQLVCLEKLDLGYNRIEQIQ----GLDTLVNLKVLNL 146
             +L  L +  N   +      L+ L  L +LDL ++ IE        L  L +L+ LNL
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 147 KMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
             N   ++  E      +LEL ++A  R++   +    +    L  LN+  +
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 7/108 (6%)

Query: 95  ENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ--GLDTLVNLKVLNLKMNR 150
            +   L+ S N +  I+N    +L+ L  LDL   +I  I      +   L  L L  N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 151 IETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           +  +    L   + L+        I S+  +  L   K L  L +  N
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSN 139

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 10/115 (8%)

Query: 91  LWMMENLVELDLSMNHIGVIE----NLDQLVCLEKLDLGYNRIEQIQ--GLDTLVNLKVL 144
           L  +ENL ELDLS + I   +     L  L  L+ L+L YN    ++         L++L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405

Query: 145 NLKMNRIETIEG---LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           +L   R++  +      +L  L++ N++ + +   +  +       L  LN++ N
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL-FDGLPALQHLNLQGN 459

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 8/122 (6%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ--GLD 136
            + T++       + NL  LDL+   I  I          L+ L L  N +  +    L 
Sbjct: 44  VLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102

Query: 137 TLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
               LK L      I +I+   L + + LE   + +N I S+         + L  L+ +
Sbjct: 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQ 161

Query: 195 RN 196
            N
Sbjct: 162 NN 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 7/110 (6%)

Query: 94  MENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR 150
              L ELDL+  H+  + + L  L  L+KL L  N+ E +         +L  L++K N 
Sbjct: 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 151 IETIEG---LDHLEKLELFNIAANRIQSL-ASLVYLRRFKHLGRLNIERN 196
                G   L++LE L   +++ + I++     + LR   HL  LN+  N
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 9/129 (6%)

Query: 79  NLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLD 136
           +     ++K  +L  +  L  L LS   +  I+      L  +  +DL +NR+      +
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI-E 518

Query: 137 TLVNLK--VLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRF--KHLGR 190
            L +LK   LNL  N I  I    L  L +    N+  N +    S +Y   +  +++ +
Sbjct: 519 ALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQK 578

Query: 191 LNIERNPVC 199
           L    + +C
Sbjct: 579 LEDTEDTLC 587

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 12/112 (10%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN 149
            + L  L      I  I+   L     LE L LG N I  I+         LKVL+ + N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 150 RIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            I  +       L     L L N+  N I  +    +         LN    
Sbjct: 164 AIHYLSKEDMSSLQQATNLSL-NLNGNDIAGIEPGAF--DSAVFQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 12/111 (10%)

Query: 96  NLVELDLSMNHIGVIE-NLDQLVCLEKLDLGYNRI--EQIQGLD--TLVNLKVLNLKMNR 150
             + L+L+ N I  IE         + L+ G  +      +GL   T+ +L +   +   
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 151 IETI-----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            E I     EGL  +  +E  N+  +   +++S      F  L  L++   
Sbjct: 240 DEDISPAVFEGLCEM-SVESINLQKHYFFNISSNT-FHCFSGLQELDLTAT 288

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 9/118 (7%)

Query: 79  NLRIKTLRKIENLWMMENLVELDLSMNHIGVIENL-DQLVCLEKLDLGYNRIEQIQG--L 135
           NL    L K++    +  L  LDLS N +  +  L   L  L  LD+ +NR+  +    L
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 136 DTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
             L  L+ L LK N ++T+    L    KLE  ++A N +  L + +       L  L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL----LNGLENL 174

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
           +   L LS N +       L     L +L+L    + ++Q   TL  L  L+L  N++++
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 154 I----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           +    + L  L  L++     NR+ SL     LR    L  L ++ N
Sbjct: 92  LPLLGQTLPALTVLDVSF---NRLTSLPLGA-LRGLGELQELYLKGN 134

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 9/112 (8%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
            L  LD+S N +  +    L  L  L++L L  N ++ +    L     L+ L+L  N +
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

Query: 152 ETI-EGL-DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-VCD 200
             +  GL + LE L+   +  N + ++    +      L    +  NP +C+
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS--HLLPFAFLHGNPWLCN 210

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 28/169 (16%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIG 108
           +S   +  L          +  K +K +NL    + KI +   + ++NL  L+LS N +G
Sbjct: 273 LSHGFVFSLNSRV-----FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

Query: 109 VIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEGLDHLEKLE 164
            + +     L  +  +DL  N I  IQ      L  L+ L+L+ N + TI  +  +  + 
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387

Query: 165 L-----------------FNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           L                  +++ NR+++L  L +L R  HL  L + +N
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 15/131 (11%)

Query: 79  NLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN---LDQLVCLEKLDLGYNRIEQIQG- 134
             R++ L  +  L  + +L  L L+ N            +   LE+L LG N ++     
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469

Query: 135 ------LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFK 186
                  + L +L+VL L  N + ++      HL  L   ++ +NR+  L+         
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL---PA 526

Query: 187 HLGRLNIERNP 197
           +L  L+I RN 
Sbjct: 527 NLEILDISRNQ 537

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
           + +L  L L+ N++  +       L  L  L L  NR+  +   D   NL++L++  N++
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538

Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV----CDKENVDGF 207
                 D    L + +I  N+      L     + +   + I   P        ++  G 
Sbjct: 539 LAPN-PDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGV 597

Query: 208 AIAMVPQLQCYNNHIIL 224
           ++  +    C    ++ 
Sbjct: 598 SLFSLSTEGCDEEEVLK 614

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 5e-09
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 94  MENLVELDLSMNHI--GVIEN--LDQLVCLEKLDLGYNRIEQIQ---GLDTLVNLKVLNL 146
           + +L EL L    +   V+++     L  L +LDL  N+I  +        L +LK ++ 
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155

Query: 147 KMNRIETIEGLD----HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
             N+I  +   +      + L  F++AAN + S  S+ + +       + +E  
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI---QGLDTLVNLKVLNLKMNR 150
               L LS N+I  +       L  L+ L+LG          +    L NL++L+L  ++
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 151 IETIEG--LDHLEKLELFNIAANRIQSLA-SLVYLRRFKHLGRLNIERN 196
           I  +       L  L    +    +        Y R  K L RL++ +N
Sbjct: 85  IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 29/128 (22%)

Query: 96  NLVELDLSMNHIGVIENLDQLVC--------LEKLDLGYNRIE--------------QIQ 133
            L    L+ N +    ++D   C        LE LD+  N                 Q  
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 134 GLDTLVNLKVLNLKMNRIETI-----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
            L    ++       + I+        GL     +   +++   + SL S V     K L
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS-VRHLDLSHGFVFSLNSRV-FETLKDL 292

Query: 189 GRLNIERN 196
             LN+  N
Sbjct: 293 KVLNLAYN 300

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 22/148 (14%)

Query: 51  ISENLLSLLQES-TNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGV 109
           +  N L  L +   +L E +         N +++ L +++NL     L  +    N +  
Sbjct: 160 VDNNSLKKLPDLPPSL-EFIAAG------NNQLEELPELQNL---PFLTAIYADNNSLKK 209

Query: 110 IENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETI-EGLDHLEKLELFNI 168
           +   D  + LE +  G N +E++  L  L  L  +    N ++T+ +    LE L + + 
Sbjct: 210 LP--DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRD- 266

Query: 169 AANRIQSLASLVYLRRFKHLGRLNIERN 196
             N +  L  L      + L  L++  N
Sbjct: 267 --NYLTDLPEL-----PQSLTFLDVSEN 287

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 95  ENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETI 154
             L  L +S N +  +  L     L+ +D+  N ++++   D   +L+ +    N++E +
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL--PDLPPSLEFIAAGNNQLEEL 188

Query: 155 EGLDHLEKLELFNIAANRIQSL 176
             L +L  L       N ++ L
Sbjct: 189 PELQNLPFLTAIYADNNSLKKL 210

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 24/143 (16%), Positives = 53/143 (37%), Gaps = 12/143 (8%)

Query: 56  LSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQ 115
           +    E  N   + +          R   + ++ +  +     EL+L+   +  +  L  
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-LDRQAHELELNNLGLSSLPEL-- 89

Query: 116 LVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQ 174
              LE L    N + ++ +   +L +L V N  +  +  +     LE L + N   N+++
Sbjct: 90  PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL--PPLLEYLGVSN---NQLE 144

Query: 175 SLASLVYLRRFKHLGRLNIERNP 197
            L  L        L  ++++ N 
Sbjct: 145 KLPELQNS---SFLKIIDVDNNS 164

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 94  MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
             +L EL++S N +  +  L     LE+L   +N + ++   +   NLK L+++ N +  
Sbjct: 316 PPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPLRE 371

Query: 154 I-EGLDHLEKLELFNIAANRIQSLASLVYL 182
             +  + +E L + +  A   +   +L  L
Sbjct: 372 FPDIPESVEDLRMNSHLAEVPELPQNLKQL 401

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 22/110 (20%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVI----ENLDQLVC--------------LEKLDLGY 126
           L ++  L  +  L  +    N +  +     +L+ L                L  LD+  
Sbjct: 227 LEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE 286

Query: 127 NRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSL 176
           N    +  L    NL  LN   N I ++  L     LE  N++ N++  L
Sbjct: 287 NIFSGLSEL--PPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIEL 332

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 23/104 (22%)

Query: 94  MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL-----------------D 136
              L  L  S NH+  +  L     L++L + YN + +   +                 +
Sbjct: 336 PPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393

Query: 137 TLVNLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSLASL 179
              NLK L+++ N +    +  + +E L + +    R+      
Sbjct: 394 LPQNLKQLHVETNPLREFPDIPESVEDLRMNS---ERVVDPYEF 434

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 6/114 (5%)

Query: 89  ENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVL 144
            + +    L  LDLS   I  IE+     L  L  L L  N I+ +       L +L+ L
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 145 NLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
                 + ++E   + HL+ L+  N+A N IQS     Y     +L  L++  N
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 96  NLVELDLSMNHIGVI--ENLDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNRI 151
           +   LDLS N +  +   +      L+ LDL    I+ I      +L +L  L L  N I
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 152 ETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           +++       L  L+        + SL +   +   K L  LN+  N
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHN 134

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 89  ENLWMMENLVELDLSMNHI-GVIENLDQLVCLEKLDLGYNRIEQIQGLDT---LVNLKVL 144
           ++ +   +L  LDLS N +  +  N   L  LE LD  ++ ++Q+        L NL  L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 145 NLKMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           ++             + L  LE+  +A N  Q           ++L  L++ + 
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 11/153 (7%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
           +S N +  +  +    E+L+        +  +K + +      + NL+ LD+S  H  V 
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDF---QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 111 EN--LDQLVCLEKLDLGYNRIEQI---QGLDTLVNLKVLNLKMNRIETI--EGLDHLEKL 163
            N   + L  LE L +  N  ++         L NL  L+L   ++E +     + L  L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 164 ELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           ++ N++ N   SL +    +    L  L+   N
Sbjct: 497 QVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLN 528

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 7/124 (5%)

Query: 79  NLRIKTLRKIENLWM-----MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ 133
             R+  L    +  +     + N+    L    I  +++       + L+L   +  Q  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 134 GLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVY-LRRFKHLGRLN 192
            L  L +LK L    N+         L  LE  +++ N +               L  L+
Sbjct: 321 TL-KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 193 IERN 196
           +  N
Sbjct: 380 LSFN 383

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 89  ENLWMMENLVELDLSMNHI-GVIEN-LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVL 144
           +    + NL  LDLS   +  +     + L  L+ L++ +N    +       L +L+VL
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 145 NLKMNRIETIEG--LDHLEK-LELFNIAANRIQ 174
           +  +N I T +   L H    L   N+  N   
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 21/120 (17%)

Query: 85  LRKIEN--LWMMENLVELDLSMNHIGVI---ENLDQLVCLEKLDLGYNRIEQI--QGLDT 137
           L  +EN  +  ++ L EL+++ N I      E    L  LE LDL  N+I+ I    L  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 138 LVNLKV----LNLKMNRIETIE----GLDHLEKLEL------FNIAANRIQSLASLVYLR 183
           L  + +    L+L +N +  I+        L KL L       N+    IQ LA L   R
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 12/128 (9%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHI-----GVIENLDQL-VCLEKLDLGYNRIEQIQ- 133
            I++ +  E    + NL  LDLS N I       +  L Q+ +    LDL  N +  IQ 
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 134 GLDTLVNLKVLNLKMNRIETI---EGLDHLEKLELFNIAANRIQSLASLVYLRR--FKHL 188
           G    + L  L L+ N          +  L  LE+  +     ++  +L    +   + L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 189 GRLNIERN 196
             L IE  
Sbjct: 255 CNLTIEEF 262

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 24/158 (15%), Positives = 51/158 (32%), Gaps = 19/158 (12%)

Query: 51  ISENLLS--LLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIG 108
           +  N  S  +++        L++++L+         L K +    +E L  L +    + 
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS-ALEGLCNLTIEEFRLA 265

Query: 109 VIEN--------LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEG--LD 158
            ++          + L  +    L    IE+++        + L L   +        L 
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 159 HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            L++L   +       S   L        L  L++ RN
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDL------PSLEFLDLSRN 357

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 16/109 (14%)

Query: 96  NLVELDLSMNHIGVI---ENLDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLK 147
            L +L L  N   +      +  L  LE   L          L       L  L  L ++
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 148 MNRIETIEG--------LDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
             R+  ++          + L  +  F++ +  I+ +    Y   ++HL
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 76  KAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL 135
              NL+ K++        + ++ ++  + + I  ++ +  L  +  L LG N++  I  L
Sbjct: 22  IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISAL 81

Query: 136 DTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI 193
             L NL  L L  N+++++     D L  L+   +  N++QSL   V+  +  +L  LN+
Sbjct: 82  KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF-DKLTNLTYLNL 140

Query: 194 ERN 196
             N
Sbjct: 141 AHN 143

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 28/109 (25%)

Query: 96  NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIE---------------------QIQG 134
           N+  L L  N +  I  L +L  L  L L  N+++                     Q+Q 
Sbjct: 64  NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123

Query: 135 L-----DTLVNLKVLNLKMNRIETIE-GL-DHLEKLELFNIAANRIQSL 176
           L     D L NL  LNL  N+++++  G+ D L  L   +++ N++QSL
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 15/84 (17%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKM 148
           NL  L+L+ N +  +     D+L  L +LDL YN   Q+Q L     D L  LK L L  
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN---QLQSLPEGVFDKLTQLKDLRLYQ 190

Query: 149 NRIETI-EG-LDHLEKLE---LFN 167
           N+++++ +G  D L  L+   L +
Sbjct: 191 NQLKSVPDGVFDRLTSLQYIWLHD 214

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 18/155 (11%)

Query: 53  ENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI-E 111
            +       S N   + +  + +KA    ++              V L+L    +    +
Sbjct: 46  WHSAWRQANSNNPQIETRTGRALKATADLLEDAT-------QPGRVALELRSVPLPQFPD 98

Query: 112 NLDQLVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNLKMNRIETI-EGLDHLEKLELFNIA 169
              +L  L+ + +    + ++   +     L+ L L  N +  +   +  L +L   +I 
Sbjct: 99  QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158

Query: 170 ANR--------IQSLASLVYLRRFKHLGRLNIERN 196
           A          + S  +    +   +L  L +E  
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 82  IKTLRKIENLWMMEN--LVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQI-QGLDTL 138
           I +L ++  L +     L EL   +           LV L+ L L +  I  +   +  L
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205

Query: 139 VNLKVLNLKMNRI----ETIEGLDHLEKLELFNIAANRIQSL-ASLVYLRRFKHL 188
            NLK L ++ + +      I  L  LE+L+L       +++           K L
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC--TALRNYPPIFGGRAPLKRL 258

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 10/98 (10%)

Query: 89  ENLWMMENLVELDLS-MNHIGVI-ENLDQLVCLEKLDL-GYNRIEQI-QGLDTLVNLKVL 144
             +  +  L ELDL     +            L++L L   + +  +   +  L  L+ L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 145 NLKMNRI-----ETIEGLDHLEKLEL-FNIAANRIQSL 176
           +L+           I  L     + +  ++ A   Q  
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 10/108 (9%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
           +   LDL  N I  +       L  L  L L  N+I +I       L  L+ L +  N +
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 152 ETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
             I       L +L + +   NRI+ +   V     +++  + +  NP
Sbjct: 115 VEIPPNLPSSLVELRIHD---NRIRKVPKGV-FSGLRNMNCIEMGGNP 158

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 17/97 (17%)

Query: 94  MENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ-GLDTLVNLKVLNLKMNR 150
              L  L L  N I +IEN  L  L  L +L L  N++ ++  GL  L  L+V+ L  N 
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275

Query: 151 IETIE-----------GLDHLEKLELFNIAANRIQSL 176
           I  +               +   + LFN   N +   
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFN---NPVPYW 309

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 32/155 (20%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
           +L  L L  N I  I       L  L+KL +  N + +I   +   +L  L +  NRI  
Sbjct: 79  HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRK 137

Query: 154 I-----EGLDHLEKLELFN--IAANRIQSLA----SLVYLR------------RFKHLGR 190
           +      GL ++  +E+    +  +  +  A     L YLR              + L  
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE 197

Query: 191 LNIERNPVCDKENVDGFAIAMVPQLQC---YNNHI 222
           L+++ N +   + ++   +    +L      +N I
Sbjct: 198 LHLDHNKI---QAIELEDLLRYSKLYRLGLGHNQI 229

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 13/112 (11%)

Query: 94  MENLVELDLSMNHI---GVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNR 150
           + N+  +++  N +   G        + L  L +   ++  I   D    L  L+L  N+
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK-DLPETLNELHLDHNK 204

Query: 151 IETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
           I+ IE         L +L L +   N+I+ + +   L     L  L+++ N 
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGH---NQIRMIENGS-LSFLPTLRELHLDNNK 252

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%)

Query: 95  ENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETI 154
            + V     M     I + +QL  L  LD   + I  + G++ L  L  L    N I T+
Sbjct: 21  ASEVAAAFEMQATDTI-SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL 79

Query: 155 EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQ 214
           + L     L      +N++ +L     +     L  LN + N +     +D     ++  
Sbjct: 80  D-LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKL---TKLDVSQNPLLTY 131

Query: 215 LQCYNNHI 222
           L C  N +
Sbjct: 132 LNCARNTL 139

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 18/147 (12%)

Query: 79  NLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTL 138
           N  I  +  IE L     L +L  + N+I  + +L Q   L  L    N++  +  +  L
Sbjct: 51  NSSITDMTGIEKL---TGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNLD-VTPL 105

Query: 139 VNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV 198
             L  LN   N++  ++ +     L   N A N +  +     +     L  L+   N  
Sbjct: 106 TKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKK 160

Query: 199 CDKENVDGFAIAMVPQLQ---CYNNHI 222
             K +V         QL    C  N I
Sbjct: 161 ITKLDVTPQ-----TQLTTLDCSFNKI 182

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 90  NLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMN 149
           ++     L  L+ + N +  I ++     L +LD   N+      +     L  L+   N
Sbjct: 122 DVSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180

Query: 150 RIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           +I  ++ +   + L   N   N I  L     L +   L  L+   N
Sbjct: 181 KITELD-VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSN 222

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 14/146 (9%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
            S N L+ L  ST    KL     +  +   +  +    +L     L+            
Sbjct: 240 CSVNPLTELDVSTL--SKLTT---LHCIQTDLLEI----DLTHNTQLIYFQAEGCRKIKE 290

Query: 111 ENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAA 170
            ++     L  LD     I ++  L     L  L L    +  ++ + H  KL+  +   
Sbjct: 291 LDVTHNTQLYLLDCQAAGITELD-LSQNPKLVYLYLNNTELTELD-VSHNTKLKSLSCVN 348

Query: 171 NRIQSLASLVYLRRFKHLGRLNIERN 196
             IQ  +S+  +     L        
Sbjct: 349 AHIQDFSSVGKI---PALNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 4/123 (3%)

Query: 56  LSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIE--NLWMMENLVELDLSMNHIGVIENL 113
           L+ L        ++ +    + +  + +  RKI+  ++     L  LD     I  + +L
Sbjct: 256 LTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-DL 314

Query: 114 DQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRI 173
            Q   L  L L    + ++  +     LK L+     I+    +  +  L     A  + 
Sbjct: 315 SQNPKLVYLYLNNTELTELD-VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQT 373

Query: 174 QSL 176
            ++
Sbjct: 374 ITM 376

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 13/122 (10%), Positives = 40/122 (32%), Gaps = 4/122 (3%)

Query: 54  NLLSLLQESTNLAEKLQIYKL--IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIE 111
            L+    E     ++L +     +  ++ +   + ++ +L     LV L L+   +  + 
Sbjct: 276 QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTELTEL- 333

Query: 112 NLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAAN 171
           ++     L+ L      I+    +  +  L        +  T+             ++ +
Sbjct: 334 DVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

Query: 172 RI 173
            +
Sbjct: 394 LL 395

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAV--NLRIKTLRKIEN--LWMMENLVELDLSMNH 106
           +S+N     +   +    L+   L      N  ++T   + +        L  LDLS N 
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 107 IGVI---ENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKL 163
           +       + D    L  L+L +  ++Q+        L VL+L  NR++     D L ++
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK-GLPAKLSVLDLSYNRLDRNPSPDELPQV 298

Query: 164 ELFNIAANRI 173
              ++  N  
Sbjct: 299 GNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 26/136 (19%), Positives = 41/136 (30%), Gaps = 32/136 (23%)

Query: 94  MENLVELDLSMNHIGVIENLDQLVC------LEKLDLGYNRIEQIQG-----LDTLVNLK 142
              L  LDLS N       L   +C      L+ L L    +E   G         V L+
Sbjct: 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231

Query: 143 VLNLKMNRIETI---EGLDHLEKLELFNIAANRIQS------------------LASLVY 181
            L+L  N +         D   +L   N++   ++                   L     
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPS 291

Query: 182 LRRFKHLGRLNIERNP 197
                 +G L+++ NP
Sbjct: 292 PDELPQVGNLSLKGNP 307

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
            L  L +S N I  ++         LE LDL +N++ +I      VNLK L+L  N  + 
Sbjct: 46  KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS-CHPTVNLKHLDLSFNAFDA 104

Query: 154 I---EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIA 210
           +   +   ++ +L+   ++   ++   S++ +        L +      +KE+ +G    
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTHLEKS-SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163

Query: 211 MVPQLQ 216
               L 
Sbjct: 164 NTESLH 169

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
               L++S N+I  +    +  L  L  L + +NRI+ +          L+ L+L  N++
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
             I        L+  +++ N   +L           L  L +   
Sbjct: 82  VKIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 6/122 (4%)

Query: 81  RIKTLRKIENLWM-MENLVELDLSMNHIGVIEN---LDQLVCLEKLDLGYNRIEQIQGLD 136
           ++K L KI  +   M++L +LD+S N +   E          L  L++  N +       
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 137 TLVNLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIER 195
               +KVL+L  N+I++I + +  LE L+  N+A+N+++S+   +   R   L ++ +  
Sbjct: 419 LPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI-FDRLTSLQKIWLHT 477

Query: 196 NP 197
           NP
Sbjct: 478 NP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 7/144 (4%)

Query: 96  NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQI---QGLDTLVNLKVLNLKMNRIE 152
            L  LDLS N +  I +    V L+ LDL +N  + +   +    +  LK L L    +E
Sbjct: 70  ELEYLDLSHNKLVKI-SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 153 TI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIA 210
                 + HL   ++  +             L+ F     L+I      +   +   ++ 
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE-SLHIVFPTNKEFHFILDVSVK 187

Query: 211 MVPQLQCYNNHIILEDERRTALEQ 234
            V  L+  N   +LED + +    
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLS 211

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 94  MENLVELDLSMNHIGVIENL--DQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMN 149
             N+   + +++   ++  L   ++     LD   N +     +    L  L+ L L+MN
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 150 RIETIEGL----DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           +++ +  +      ++ L+  +I+ N +            K L  LN+  N
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 15/83 (18%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 119 LEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQ 174
              L++  N I ++    + +L  L++L +  NRI+ ++       ++LE  +++ N++ 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 175 SLASLVYLRRFKHLGRLNIERNP 197
            ++         +L  L++  N 
Sbjct: 83  KISC----HPTVNLKHLDLSFNA 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.3 bits (135), Expect = 5e-09
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 11/161 (6%)

Query: 80  LRIKTLRKIENLWMMENLVELDLS-MNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG-- 134
            R   L  + +L   ENL EL +    H+  +E   L  L  L  L +  + +  +    
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 135 LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLN 192
                 L  LNL  N +E++    +  L  L+   ++ N +    +L +L+R++  G   
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLGG 134

Query: 193 IERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALE 233
           +    +          +A +P   C    + ++    +   
Sbjct: 135 VPEQKLQCHGQGP---LAHMPNASCGVPTLKVQVPNASVDV 172

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 22/108 (20%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKM 148
           +  +LDL  N +  + +    +L  L  L L  N   ++Q L       L NL+ L +  
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN---KLQTLPAGIFKELKNLETLWVTD 94

Query: 149 NRIETI-----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRL 191
           N+++ +     + L +L +L L     N+++SL   V    F  L +L
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDR---NQLKSLPPRV----FDSLTKL 135

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 13/110 (11%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI 151
            L  L L+ N +  +      +L  LE L +  N+++ +     D LVNL  L L  N++
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

Query: 152 ETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           +++       L  L  L L     N +QSL   V+  +   L  L +  N
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGY---NELQSLPKGVF-DKLTSLKELRLYNN 167

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 19/114 (16%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKM 148
           NL EL L  N +  +     D L  L  L LGYN   ++Q L     D L +LK L L  
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN---ELQSLPKGVFDKLTSLKELRLYN 166

Query: 149 NRIETI-----EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
           N+++ +     + L  L+ L+L N   N+++ +    +    + L  L ++ NP
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDN---NQLKRVPEGAF-DSLEKLKMLQLQENP 216

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 32/153 (20%)

Query: 80  LRIKTLRKIENLWMMENLVELDLSMNHIGVIENL-DQLVCLEKLDLGYNRIEQIQGLDTL 138
           L +K LR   +L      V L+        +  + + +  L  L+L  NR+ ++  + ++
Sbjct: 132 LDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSI 191

Query: 139 V----NLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
           V    NLK+LNL  N +++   LD ++ L+L                         L ++
Sbjct: 192 VQKAPNLKILNLSGNELKSERELDKIKGLKLEE-----------------------LWLD 228

Query: 195 RNPVC----DKENVDGFAIAMVPQLQCYNNHII 223
            N +C    D+           P+L   + H +
Sbjct: 229 GNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 261

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 8/110 (7%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYN-RIEQIQG--LDTLVNLKVLNLKMNR 150
           +   L L   H+  I +     L  + ++ +  +  ++Q++      L  +  + ++  R
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 151 -IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
            +  I+   L  L  L+   I    ++    L  +        L I  NP
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 11/126 (8%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
           I    L +  + T +      + L    N  + ++       +    + L L  N    +
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171

Query: 111 ENLD-QLVCLEKLDLGYNR-IEQI-----QGLDTLVNLKVLNLKMNRIETI--EGLDHLE 161
           +        L+ + L  N+ +  I      G+ +     +L++    +  +  +GL+HL+
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS--GPSLLDVSQTSVTALPSKGLEHLK 229

Query: 162 KLELFN 167
           +L   N
Sbjct: 230 ELIARN 235

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
            L  L LS N I  ++         LE LD+ +NR++ I     + +L+ L+L  N  + 
Sbjct: 77  ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS-CCPMASLRHLDLSFNDFDV 135

Query: 154 I---EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCD 200
           +   +   +L KL    ++A + + L  L           L++    +  
Sbjct: 136 LPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 100 LDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETI- 154
           L LS N I  +    +  L  L  L L +NRI  +         +L+ L++  NR++ I 
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116

Query: 155 -EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
              +  L  L+L     N    L           L  L +   
Sbjct: 117 CCPMASLRHLDLSF---NDFDVLPVCKEFGNLTKLTFLGLSAA 156

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 119 LEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQ 174
            + L L  N I +++   +  L  L+VL L  NRI +++       + LE  +++ NR+Q
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 175 SLASLVYLRRFKHLGRLNIERNP 197
           +++          L  L++  N 
Sbjct: 114 NISC----CPMASLRHLDLSFND 132

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 10/156 (6%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENL--WMMENLVELDLSMNHIG 108
           I    ++   +           K +   +++ +     +     +   +    LS++   
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342

Query: 109 VIENL--DQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNRIETIEG----LDHL 160
            I  +          L+   N       QG  TL  L+ L L+ N ++          ++
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM 402

Query: 161 EKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
             LE  +++ N + S A        + +  LN+  N
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 10/81 (12%)

Query: 95  ENLVELDLSMNHI--GVIENLDQLVCLEKLDLGYNRIEQI-QGLDTLVNLKVLNLKMNRI 151
           E+++ L+LS N +   V   L     ++ LDL  NRI  I + +  L  L+ LN+  N++
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485

Query: 152 ETI-----EGLDHLEKLELFN 167
           +++     + L  L+ + L +
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 94  MENLVELDLSMNHI--GVIENLDQLVC-LEKLDLGYNRIEQIQGLDTLV-NLKVLNLKMN 149
           M +L  LD+S+N +     +        +  L+L  N +        L   +KVL+L  N
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNN 460

Query: 150 RIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
           RI +I + + HL+ L+  N+A+N+++S+   V   R   L  + +  NP
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPDGV-FDRLTSLQYIWLHDNP 508

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 14/109 (12%)

Query: 99  ELDLSMNHIGVIEN---LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNR 150
           EL L+ N +G I +     +L  L KL+L  N   Q+ G+     +   +++ L L  N+
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRN---QLTGIEPNAFEGASHIQELQLGENK 89

Query: 151 IETI-EGL-DHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
           I+ I   +   L +L+  N+  N+I  +    +      L  LN+  NP
Sbjct: 90  IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF-EHLNSLTSLNLASNP 137

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 120 EKLDLGYNRIEQIQG---LDTLVNLKVLNLKMNRIETIE-GL-DHLEKLELFNIAANRIQ 174
            +L L  N + +I        L +L  L LK N++  IE    +    ++   +  N+I+
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 175 SLASLVYLRRFKHLGRLNI 193
            +++ +    F  L +L  
Sbjct: 92  EISNKM----FLGLHQLKT 106

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 7e-08
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDT---LVNLKVLNL-KMN 149
           N +EL   +  + VI+         LEK+++  N + ++   D    L  L  + + K N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 150 RIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
            +  I      +L  L+   I+   I+ L  +  +   +    L+I+ N 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-KVLLDIQDNI 139

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 96  NLVELDLSMNHIGVIENL--DQLVCLEKLDLGYN-RIEQI-----QGLDTLVNLKVLNLK 147
           NL  L +S   I  + ++     +    LD+  N  I  I      GL       +L L 
Sbjct: 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL--SFESVILWLN 162

Query: 148 MNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
            N I+ I     +  +  EL     N ++ L + V          L+I R  
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRTR 213

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 30/146 (20%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
           IS   +  L +   +   LQ   L    N+ I T+ +   + +    V L L+ N I  I
Sbjct: 111 ISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169

Query: 111 EN--------------------------LDQLVCLEKLDLGYNRIEQIQ--GLDTLVNLK 142
            N                                   LD+   RI  +   GL+ L  L+
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229

Query: 143 VLNL-KMNRIETIEGLDHLEKLELFN 167
             +   + ++ T+E L  L +  L  
Sbjct: 230 ARSTYNLKKLPTLEKLVALMEASLTY 255

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 34/204 (16%)

Query: 95  ENLVELDLSMNHIGV----IENLDQLVC--------------LEKLDLGYNRIEQIQGLD 136
             L EL +S N +         L +L                L++L +  NR+  +    
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP--V 238

Query: 137 TLVNLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSL-ASLVYLRRFKHLGRLNIE 194
               LK L +  NR+ ++      L  L ++    N++  L  SL++L        +N+E
Sbjct: 239 LPSELKELMVSGNRLTSLPMLPSGLLSLSVYR---NQLTRLPESLIHLSS---ETTVNLE 292

Query: 195 RNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLMVQRERQ 254
            NP+         A+  +     Y+  II  D    +  +    +       L+  RE +
Sbjct: 293 GNPL---SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGE 349

Query: 255 NALASQRKS---EEKSKAFVENLE 275
            A A +      E+ + AF   L+
Sbjct: 350 PAPADRWHMFGQEDNADAFSLFLD 373

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 79  NLRIKTLRKIENLWMMENLVELDLSMNHIGVI-ENLDQLVCLEKLDLGYNRIEQIQGLDT 137
             R   ++K+    +      L++  + +  + + L     +  L +  N +  +     
Sbjct: 25  RGRAAVVQKMRA-CLNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLP--AL 79

Query: 138 LVNLKVLNLKMNRIETI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
              L+ L +  N++ ++      L +L +F+     + +L S         L +L I  N
Sbjct: 80  PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGN 131

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 13/103 (12%)

Query: 96  NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETI- 154
            +  L+++ N +  +   +    LE LD   NR+  +   +   +LK L++  N++  + 
Sbjct: 81  QITVLEITQNALISL--PELPASLEYLDACDNRLSTL--PELPASLKHLDVDNNQLTMLP 136

Query: 155 EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNP 197
           E    LE +   N   N++  L  L        L  L++  N 
Sbjct: 137 ELPALLEYINADN---NQLTMLPEL-----PTSLEVLSVRNNQ 171

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 19/132 (14%)

Query: 51  ISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI 110
           +  N L++L E   L E +         N ++  L +     +  +L  L +  N +  +
Sbjct: 127 VDNNQLTMLPELPALLEYINAD------NNQLTMLPE-----LPTSLEVLSVRNNQLTFL 175

Query: 111 ENLDQLVCLEKLDLGYNRIEQI-QGLDTLVNLK----VLNLKMNRIETI-EGLDHLEKLE 164
              +    LE LD+  N +E +        + +        + NRI  I E +  L+   
Sbjct: 176 P--ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTC 233

Query: 165 LFNIAANRIQSL 176
              +  N + S 
Sbjct: 234 TIILEDNPLSSR 245

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 11/86 (12%)

Query: 99  ELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRIE 152
           EL L  N   ++   L     L  +DL  N   +I  L       +  L  L L  NR+ 
Sbjct: 35  ELYLDGNQFTLVPKELSNYKHLTLIDLSNN---RISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 153 TI-EGL-DHLEKLELFNIAANRIQSL 176
            I     D L+ L L ++  N I  +
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDISVV 117

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKM 148
           +L  +DLS N I  + N     +  L  L L YN   +++ +     D L +L++L+L  
Sbjct: 55  HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN---RLRCIPPRTFDGLKSLRLLSLHG 111

Query: 149 NRIETI-EGL-DHLEKLELFNIAAN 171
           N I  + EG  + L  L    I AN
Sbjct: 112 NDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 120 EKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIE-GL-DHLEKLELFNIAANRIQSL 176
            +L L  N+   +   L    +L +++L  NRI T+      ++ +L    ++ NR++ +
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 177 ASLVYLRRFKHLGRLNI 193
                   F  L  L +
Sbjct: 94  PPRT----FDGLKSLRL 106

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 18/113 (15%)

Query: 88  IENLWMMENLVELDLSMNHI-GVI---ENLDQLVCLEKLDLGYNRIE---QIQGLDTLVN 140
           +       +L  LDLS N + G +    +L     L+ L++  N ++   ++ G   L +
Sbjct: 93  VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152

Query: 141 LKVLNLKMNRIE-----TIEGLDHLEKLELFNIAANR------IQSLASLVYL 182
           L+VL+L  N I           D   +L+   I+ N+      +    +L +L
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 17/110 (15%)

Query: 89  ENLWMMENLVELDLSMNHI---GVIENLDQLVCLEKLDLGYNRIE-----QIQGLDTLVN 140
            +L     L  L++S N +   G +    +L  LE LDL  N I           D    
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179

Query: 141 LKVLNLKMNRIE-TIEGLDHLEKLELFNIAANR-------IQSLASLVYL 182
           LK L +  N+I   ++ +     LE  ++++N        +   ++L +L
Sbjct: 180 LKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL 228

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 10/117 (8%)

Query: 90  NLWMMENLVELDLSMNHI-GVIENLDQLVCLEKLDLGYNR----IEQIQGLDTLVNLKVL 144
           +L  +  L  L LS +HI G +        L  LDL  N     +  +  L +   LK L
Sbjct: 72  SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131

Query: 145 NLKMNRIE---TIEGLDHLEKLELFNIAANRIQS--LASLVYLRRFKHLGRLNIERN 196
           N+  N ++    + G   L  LE+ +++AN I    +   V       L  L I  N
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 14/109 (12%)

Query: 89  ENLWMMENLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIE-QI-QGLDTLVNLKVL 144
            +L  +  L +L L +N + G I + L  +  LE L L +N +  +I  GL    NL  +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495

Query: 145 NLKMNRIE-TI-EGLDHLEKLELFNIAANR--------IQSLASLVYLR 183
           +L  NR+   I + +  LE L +  ++ N         +    SL++L 
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 14/110 (12%)

Query: 88  IENLWMMENLVELDLSMNHI-GVI----ENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLK 142
           +     + +L  LDLS N I G         D    L+ L +  N+I     +   VNL+
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE 203

Query: 143 VLNLKMNRIE-TIEGLDHLEKLELFNIAANR--------IQSLASLVYLR 183
            L++  N     I  L     L+  +I+ N+        I +   L  L 
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 11/116 (9%)

Query: 89  ENLWMMENLVELDLSMNHI-GVIENLDQLVCLEKLDLGYNRI-----EQIQGLDTLVNLK 142
             +     L  L++S N   G I     L  L+ L L  N+      + + G      L 
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGA--CDTLT 297

Query: 143 VLNLKMNRIE-TI-EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
            L+L  N     +         LE   +++N       +  L + + L  L++  N
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 23/110 (20%)

Query: 91  LWMMENLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIEQIQG---LDTLVNLKVLN 145
           L     L  LD+S N + G     +     L+ L++  N   Q  G      L +L+ L+
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN---QFVGPIPPLPLKSLQYLS 275

Query: 146 LKMNRI-----ETIEGLDHLEKLELFNIAANR--------IQSLASLVYL 182
           L  N+      + + G    + L   +++ N           S + L  L
Sbjct: 276 LAENKFTGEIPDFLSG--ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 22/114 (19%)

Query: 89  ENLWMMENLVELDLSMNHI-GVI--ENLDQLVCLEKLDLGYNRI-----EQIQGLDTLVN 140
                   L  L LS N+  G +  + L ++  L+ LDL +N       E +  L    +
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--SAS 369

Query: 141 LKVLNLKMNRIE-TIE---GLDHLEKLELFNIAANR--------IQSLASLVYL 182
           L  L+L  N     I      +    L+   +  N         + + + LV L
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 93  MMENLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIE-QI-QGLDTLVNLKVLNLKM 148
            M  L  L+L  N I G I + +  L  L  LDL  N+++ +I Q +  L  L  ++L  
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713

Query: 149 NRIE 152
           N + 
Sbjct: 714 NNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 89  ENLWMMENLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIE-QI-QGLDTLVNLKVL 144
                  +++ LD+S N + G I + +  +  L  L+LG+N I   I   +  L  L +L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685

Query: 145 NLKMNRIE-TI-EGLDHLEKLELFNIAANRIQ 174
           +L  N+++  I + +  L  L   +++ N + 
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 17/91 (18%)

Query: 96  NLVELDLSMNHI-----GVIENLDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLN 145
           NL EL L  N +     GV    D L  L  LDLG N   Q+  L     D LV+LK L 
Sbjct: 65  NLKELYLGSNQLGALPVGV---FDSLTQLTVLDLGTN---QLTVLPSAVFDRLVHLKELF 118

Query: 146 LKMNRIETI-EGLDHLEKLELFNIAANRIQS 175
           +  N++  +  G++ L  L    +  N+++S
Sbjct: 119 MCCNKLTELPRGIERLTHLTHLALDQNQLKS 149

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 9e-06
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 12/87 (13%)

Query: 99  ELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRI 151
            L L  N I  +E    D L+ L++L LG N   Q+  L     D+L  L VL+L  N++
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSN---QLGALPVGVFDSLTQLTVLDLGTNQL 100

Query: 152 ETIE-GL-DHLEKLELFNIAANRIQSL 176
             +   + D L  L+   +  N++  L
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTEL 127

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 120 EKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-GL-DHLEKLELFNIAANRIQS 175
           + L L  N+I +++    D+L+NLK L L  N++  +  G+ D L +L + ++  N++  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 176 LASLVYLRRFKHLGRL 191
           L S V    F  L  L
Sbjct: 103 LPSAV----FDRLVHL 114

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 96  NLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIE-QIQGLDTLVNLKVLNLKMNRIE 152
           NL  +DLS N + G            +K+ L  N +   +  +    NL  L+L+ NRI 
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 153 -TI-EGLDHLEKLELFNIAANRIQ 174
            T+ +GL  L+ L   N++ N + 
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 91  LWMMENLVELDLSMNHI-GVIENLDQLVCLEKLDLGYNRIE-QI-QGLDTLVNLKVLNLK 147
               +N  ++ L+ N +   +  +     L  LDL  NRI   + QGL  L  L  LN+ 
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 148 MNRIE----TIEGLDHLEKLELFN 167
            N +         L   +     N
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYAN 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 19/118 (16%)

Query: 91  LWMMENLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIE-QI-QGLDTLVNLKVLNL 146
           +  +  L  L ++  ++ G I + L Q+  L  LD  YN +   +   + +L NL  +  
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 147 KMNRIE-TI-EGLDHLEKL-ELFNIAANRI-----QSLASLVYLRRFKHLGRLNIERN 196
             NRI   I +      KL     I+ NR+      + A+L       +L  +++ RN
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-------NLAFVDLSRN 207

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 19/113 (16%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKM 148
            L  L+L  N +  +     D L  L  L L  N   Q+  L     D L  L  L L  
Sbjct: 60  KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN---QLASLPLGVFDHLTQLDKLYLGG 116

Query: 149 NRIETIE-----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN 196
           N+++++       L  L++L L     N++QS+ +  +  +  +L  L++  N
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNT---NQLQSIPAGAF-DKLTNLQTLSLSTN 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 15/84 (17%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKM 148
            L +L L  N +  + +   D+L  L++L L  N   Q+Q +     D L NL+ L+L  
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN---QLQSIPAGAFDKLTNLQTLSLST 164

Query: 149 NRIETI--EGLDHLEKLE---LFN 167
           N+++++     D L KL+   LF 
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFG 188

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 120 EKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQS 175
           EKLDL    +  +       L  L  LNL  N+++T+     D L +L    +A N++ S
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 176 LASLVYLRRFKHLGRLNIERN 196
           L   V+    + L +L +  N
Sbjct: 98  LPLGVFDHLTQ-LDKLYLGGN 117

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 12/85 (14%)

Query: 100 LDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRIE 152
           L+L  N +  + +   D+L  L KL L  N   QIQ L     D L  L +L L  N+++
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQN---QIQSLPDGVFDKLTKLTILYLHENKLQ 89

Query: 153 TI-EGL-DHLEKLELFNIAANRIQS 175
           ++  G+ D L +L+   +  N+++S
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKS 114

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 11/84 (13%)

Query: 120 EKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRIETI-EGL-DHLEKLELFNIAANR 172
            +L+L  N   ++Q L     D L  L  L+L  N+I+++ +G+ D L KL +  +  N+
Sbjct: 31  TRLELESN---KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 173 IQSLASLVYLRRFKHLGRLNIERN 196
           +QSL + V+  +   L  L ++ N
Sbjct: 88  LQSLPNGVF-DKLTQLKELALDTN 110

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 21/87 (24%)

Query: 96  NLVELDLSMNHI-----GVIENLDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLN 145
            L +L LS N I     GV    D+L  L  L L  N   ++Q L     D L  LK L 
Sbjct: 53  QLTKLSLSQNQIQSLPDGV---FDKLTKLTILYLHEN---KLQSLPNGVFDKLTQLKELA 106

Query: 146 LKMNRIETI-EG-LDHLEKLE---LFN 167
           L  N+++++ +G  D L  L+   L  
Sbjct: 107 LDTNQLKSVPDGIFDRLTSLQKIWLHT 133

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 12/87 (13%)

Query: 99  ELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRI 151
            LDL  N +  + N   D+L  L +L LG N   ++Q L     + L +L  LNL  N++
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGN---KLQSLPNGVFNKLTSLTYLNLSTNQL 88

Query: 152 ETIEG--LDHLEKLELFNIAANRIQSL 176
           +++     D L +L+   +  N++QSL
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQLQSL 115

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 15/84 (17%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKM 148
           +L  L+LS N +  + N   D+L  L++L L  N   Q+Q L     D L  LK L L  
Sbjct: 77  SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN---QLQSLPDGVFDKLTQLKDLRLYQ 133

Query: 149 NRIETI-EG-LDHLEKLE---LFN 167
           N+++++ +G  D L  L+   L +
Sbjct: 134 NQLKSVPDGVFDRLTSLQYIWLHD 157

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 36/231 (15%), Positives = 66/231 (28%), Gaps = 44/231 (19%)

Query: 10  IKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDL----LSKKGVISENLLSLLQESTNL 65
           I+   L  D    E   K++  VL    ++    L    +  +      L   +    +L
Sbjct: 6   IEGKSLKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARW--LSENIASKKDL 62

Query: 66  AE-KLQIYKLIKAVNLRIKTLRKI-ENLWMMENLVELDLSMNHIGVI------ENLDQLV 117
              +       +  +   + LR + + L     L  + LS N  G        + L +  
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 118 CLEKLDLGYNRI---------------EQIQGLDTLVNLKVLNLKMNRIETI------EG 156
            LE L L  N +                  +       L+ +    NR+E        + 
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 157 LDHLEKLELFNIAANRIQS------LASLVYLRRFKHLGRLNIERNPVCDK 201
                 L    +  N I+       L     L   + L  L+++ N     
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEG--LAYCQELKVLDLQDNTFTHL 231

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 29/132 (21%)

Query: 96  NLVELDLSMNHIGVI-------ENLDQLVCLEKLDLGYNRIEQI------QGLDTLVNLK 142
           +L EL L  N +G +         L     L  L +    I         + L    +LK
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287

Query: 143 VLNLKMNRIETIEGLDHL--------EKLELFNIAANRI-----QSLASLVYLRRFKHLG 189
            L+L  N +   EG   L         +LE   + +           +S+  L + + L 
Sbjct: 288 ELSLAGNELGD-EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV--LAQNRFLL 344

Query: 190 RLNIERNPVCDK 201
            L I  N + D 
Sbjct: 345 ELQISNNRLEDA 356

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 15/81 (18%)

Query: 99  ELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRI 151
            L L  N I  +E    D+L  L +LDL  N   Q+  L     D L  L  L+L  N++
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNN---QLTVLPAGVFDKLTQLTQLSLNDNQL 90

Query: 152 ETI-EG-LDHLEKLE---LFN 167
           ++I  G  D+L+ L    L N
Sbjct: 91  KSIPRGAFDNLKSLTHIWLLN 111

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 15/81 (18%)

Query: 99  ELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGL-----DTLVNLKVLNLKMNRI 151
            L L+ N I  +E    D LV L++L    N   ++  +     D L  L  L+L  N +
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSN---KLTAIPTGVFDKLTQLTQLDLNDNHL 93

Query: 152 ETI-EG-LDHLEKLE---LFN 167
           ++I  G  D+L+ L    L+N
Sbjct: 94  KSIPRGAFDNLKSLTHIYLYN 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	417
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.81
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.78
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.77
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.76
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.75
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.74
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.73
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.73
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.73
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.73
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.72
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.71
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.7
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.7
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.69
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.69
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.68
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.68
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.68
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.67
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.67
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.66
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.65
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.64
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.63
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.62
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.62
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.6
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.59
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.58
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.58
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.57
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.56
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.55
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.52
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.5
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.5
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.5
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.49
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.47
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.43
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.42
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.19
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.01
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.64
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.6
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.41
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.37
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.23
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.11
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.63
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.6
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.37
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.25
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.17
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.17
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.06
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.92
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.68
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.52

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=2.2e-20  Score=180.10  Aligned_cols=160  Identities=21%  Similarity=0.296  Sum_probs=122.2

Q ss_pred             ccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC
Q psy13376         57 SLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG  134 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~  134 (417)
                      .+.++.|++..+..+  +++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.++.
T Consensus        67 ~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~  146 (308)
T 1h6u_A           67 GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP  146 (308)
T ss_dssp             EEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             EEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc
Confidence            345666777666656  777888888888888777777788888888888888877777778888888888888877777


Q ss_pred             CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCC
Q psy13376        135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQ  214 (417)
Q Consensus       135 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~  214 (417)
                      +..+++|++|++++|.++.++.+..+++|++|++++|.+++++.   +..+++|++|++++|++++.++     +..+++
T Consensus       147 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~  218 (308)
T 1h6u_A          147 LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSP-----LANTSN  218 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCGG-----GTTCTT
T ss_pred             ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCcccc-----ccCCCC
Confidence            77778888888888888777767778888888888888877664   4677788888888888877664     466778


Q ss_pred             cccccCcccC
Q psy13376        215 LQCYNNHIIL  224 (417)
Q Consensus       215 L~~Ld~~~~~  224 (417)
                      |+.|+++.+.
T Consensus       219 L~~L~l~~N~  228 (308)
T 1h6u_A          219 LFIVTLTNQT  228 (308)
T ss_dssp             CCEEEEEEEE
T ss_pred             CCEEEccCCe
Confidence            8877776654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.82  E-value=7.3e-20  Score=178.54  Aligned_cols=208  Identities=21%  Similarity=0.292  Sum_probs=104.0

Q ss_pred             ccccceeeccccccCCCCchhhhHHHHHhcCCCC----CChhhhhccccccccccccccccCCcchhhhh--cccccEEE
Q psy13376          6 TVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAI----INEDLLSKKGVISENLLSLLQESTNLAEKLQI--YKLIKAVN   79 (417)
Q Consensus         6 ~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~----~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l--l~~L~~L~   79 (417)
                      .+++++.+++..|.+++++.+..+.+|..+....    .....+..+    .....+.++.|.+..+..+  +++|+.|+
T Consensus       108 ~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l----~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  183 (347)
T 4fmz_A          108 NLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNM----TGLNYLTVTESKVKDVTPIANLTDLYSLS  183 (347)
T ss_dssp             TCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTC----TTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             CCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhC----CCCcEEEecCCCcCCchhhccCCCCCEEE
Confidence            4577888999999999888877665555544211    011111111    1112334555555555444  55666666


Q ss_pred             eecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCC
Q psy13376         80 LRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDH  159 (417)
Q Consensus        80 Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~  159 (417)
                      +++|.++.++.+..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.++.+..
T Consensus       184 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  263 (347)
T 4fmz_A          184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKD  263 (347)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTT
T ss_pred             ccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhc
Confidence            66666655554555555555555555555444444445555555555555444444444455555555554444444444


Q ss_pred             CCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCccc
Q psy13376        160 LEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHII  223 (417)
Q Consensus       160 l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~  223 (417)
                      +++|++|++++|.+++++   .+..+++|+.|++++|+++..+.   ..+..+++|+.|+++.+
T Consensus       264 l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          264 LTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNEDM---EVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             CTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGGGH---HHHHTCTTCSEEECCSS
T ss_pred             CCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCcCCCcCh---hHhhccccCCEEEccCC
Confidence            444444444444444432   12344444444444444443322   23344444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=2.3e-19  Score=169.70  Aligned_cols=164  Identities=23%  Similarity=0.318  Sum_probs=146.2

Q ss_pred             ccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcc
Q psy13376         57 SLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI  132 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l  132 (417)
                      .+.+..+.+..+.++  +++|++|++++|.++.++.+..+++|++|++++|.++.++.  +..+++|++|++++|+++.+
T Consensus        45 ~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  124 (272)
T 3rfs_A           45 QIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL  124 (272)
T ss_dssp             EEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             eeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc
Confidence            445777778887777  89999999999999999889999999999999999998875  88999999999999999988


Q ss_pred             cC--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHH
Q psy13376        133 QG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFA  208 (417)
Q Consensus       133 ~~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  208 (417)
                      +.  +..+++|++|++++|.++.++.  +..+++|++|++++|.++.++. ..+..+++|+.|++++|+++..++   ..
T Consensus       125 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~  200 (272)
T 3rfs_A          125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPD---GV  200 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TT
T ss_pred             CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccCH---HH
Confidence            86  8899999999999999999874  7899999999999999998876 467889999999999999998876   35


Q ss_pred             HhcCCCcccccCcccC
Q psy13376        209 IAMVPQLQCYNNHIIL  224 (417)
Q Consensus       209 ~~~l~~L~~Ld~~~~~  224 (417)
                      +..+++|+.|+++.+.
T Consensus       201 ~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          201 FDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             HhCCcCCCEEEccCCC
Confidence            6789999999988775

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=2.1e-20  Score=178.79  Aligned_cols=165  Identities=25%  Similarity=0.310  Sum_probs=103.5

Q ss_pred             ccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC
Q psy13376         57 SLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG  134 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~  134 (417)
                      .+.++.|++..+..+  +++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++|+.|++++|.++.++.
T Consensus        72 ~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~  151 (291)
T 1h6t_A           72 KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV  151 (291)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG
T ss_pred             EEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchh
Confidence            344566666665555  666666666666666666666666666666666666666666666666666666666666655


Q ss_pred             CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCC
Q psy13376        135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQ  214 (417)
Q Consensus       135 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~  214 (417)
                      +..+++|++|++++|.++.++.+..+++|++|++++|.|++++.   +..+++|+.|++++|+++..+.+....+...+.
T Consensus       152 l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~---l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~~~~  228 (291)
T 1h6t_A          152 LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELFSQECLNKPINHQSNLVVPNT  228 (291)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCSEEEEEEEEEECCCEECCSEEEEECC
T ss_pred             hccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChh---hccCCCCCEEECcCCcccCCccccccccEEcce
Confidence            66666666666666666666556666666667776666666543   456666667777666666655433222333445


Q ss_pred             cccccCcccC
Q psy13376        215 LQCYNNHIIL  224 (417)
Q Consensus       215 L~~Ld~~~~~  224 (417)
                      ++.+|...+.
T Consensus       229 l~~l~~~~i~  238 (291)
T 1h6t_A          229 VKNTDGSLVT  238 (291)
T ss_dssp             CBCTTSCBCC
T ss_pred             EECCCCCCcC
Confidence            5555555444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.81  E-value=3e-20  Score=175.18  Aligned_cols=164  Identities=19%  Similarity=0.324  Sum_probs=134.8

Q ss_pred             cccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCC
Q psy13376         58 LLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL  135 (417)
Q Consensus        58 l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~  135 (417)
                      +.++.|++..++++  +++|+.|++++|.|+.++++..+++|++|++++|+++.++.+.. ++|++|++++|.++.++.+
T Consensus        46 L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l  124 (263)
T 1xeu_A           46 FNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDSL  124 (263)
T ss_dssp             EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGGG
T ss_pred             EECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChhh
Confidence            34666777777766  88999999999999998888899999999999999998887666 8999999999999998888


Q ss_pred             ccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCc
Q psy13376        136 DTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL  215 (417)
Q Consensus       136 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L  215 (417)
                      ..+++|++|++++|+|+.++.+..+++|++|++++|.+++++   .+..+++|+.|++++|+++..+......+...+.+
T Consensus       125 ~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~---~l~~l~~L~~L~l~~N~~~~~~~~~~~~l~~~~~l  201 (263)
T 1xeu_A          125 IHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTG---GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV  201 (263)
T ss_dssp             TTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCT---TSTTCCCCCEEEEEEEEEECCCEECCSEEEEECCC
T ss_pred             cCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchH---HhccCCCCCEEeCCCCcccCCccccccceEECCee
Confidence            889999999999999999888888999999999999998873   46788999999999999888765322222334667


Q ss_pred             ccccCcccCH
Q psy13376        216 QCYNNHIILE  225 (417)
Q Consensus       216 ~~Ld~~~~~~  225 (417)
                      +.+|...+..
T Consensus       202 ~~l~~~~i~~  211 (263)
T 1xeu_A          202 KDPDGRWISP  211 (263)
T ss_dssp             BCTTSCBCCC
T ss_pred             ecCCCCCcCC
Confidence            7777776653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.80  E-value=1.8e-19  Score=175.74  Aligned_cols=235  Identities=19%  Similarity=0.221  Sum_probs=182.3

Q ss_pred             cccccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhcccc--ccccccccccccC-Ccchhhhh--cccccEEE
Q psy13376          5 TTVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGV--ISENLLSLLQEST-NLAEKLQI--YKLIKAVN   79 (417)
Q Consensus         5 ~~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~--~~~~~~~l~~~~n-~i~~l~~l--l~~L~~L~   79 (417)
                      ..+++++.+++..|.+++++.+..+.+|..+..   ..+.+.....  .......+.++.| .+..+..+  +++|+.|+
T Consensus        85 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l---~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~  161 (347)
T 4fmz_A           85 SNLVKLTNLYIGTNKITDISALQNLTNLRELYL---NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT  161 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC---TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEE
T ss_pred             hcCCcCCEEEccCCcccCchHHcCCCcCCEEEC---cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEE
Confidence            345789999999999999988887777666552   2222222210  0111234456666 44555555  88999999


Q ss_pred             eecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCC
Q psy13376         80 LRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDH  159 (417)
Q Consensus        80 Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~  159 (417)
                      +++|.++.++.+..+++|++|++++|.++.++.+..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..
T Consensus       162 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  241 (347)
T 4fmz_A          162 VTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLAN  241 (347)
T ss_dssp             CCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTT
T ss_pred             ecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhc
Confidence            99999999888999999999999999999988888999999999999999988888889999999999999999888899


Q ss_pred             CCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHHHHHHHHHHHhhhh
Q psy13376        160 LEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDV  239 (417)
Q Consensus       160 l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~~~~l  239 (417)
                      +++|++|++++|.++.++   .+..+++|+.|++++|+++.++.     +..+++|+.|+++.+.....   ....+..+
T Consensus       242 l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~---~~~~l~~l  310 (347)
T 4fmz_A          242 LSQLTWLEIGTNQISDIN---AVKDLTKLKMLNVGSNQISDISV-----LNNLSQLNSLFLNNNQLGNE---DMEVIGGL  310 (347)
T ss_dssp             CTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECCSSCCCGG---GHHHHHTC
T ss_pred             CCCCCEEECCCCccCCCh---hHhcCCCcCEEEccCCccCCChh-----hcCCCCCCEEECcCCcCCCc---ChhHhhcc
Confidence            999999999999999875   35788999999999999998753     57899999999988864322   22344556


Q ss_pred             hHHHHHhHHHHHHH
Q psy13376        240 RTETLKDLMVQRER  253 (417)
Q Consensus       240 ~~L~~l~~~~~~~~  253 (417)
                      +.|+.++...+.+.
T Consensus       311 ~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          311 TNLTTLFLSQNHIT  324 (347)
T ss_dssp             TTCSEEECCSSSCC
T ss_pred             ccCCEEEccCCccc
Confidence            67777766666543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=2.2e-19  Score=171.72  Aligned_cols=160  Identities=25%  Similarity=0.316  Sum_probs=145.2

Q ss_pred             ccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC
Q psy13376         57 SLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG  134 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~  134 (417)
                      .+.++.|.+..++++  +++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.++.
T Consensus        50 ~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~  129 (291)
T 1h6t_A           50 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING  129 (291)
T ss_dssp             EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGG
T ss_pred             EEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChh
Confidence            445777788877777  899999999999999998899999999999999999999889999999999999999999988


Q ss_pred             CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCC
Q psy13376        135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQ  214 (417)
Q Consensus       135 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~  214 (417)
                      +..+++|++|++++|+++.++.+..+++|++|++++|.+++++.   +..+++|+.|++++|++++++.     +..+++
T Consensus       130 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~~-----l~~l~~  201 (291)
T 1h6t_A          130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA-----LAGLKN  201 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG-----GTTCTT
T ss_pred             hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCChh-----hccCCC
Confidence            99999999999999999999889999999999999999999865   6889999999999999998764     578999


Q ss_pred             cccccCcccC
Q psy13376        215 LQCYNNHIIL  224 (417)
Q Consensus       215 L~~Ld~~~~~  224 (417)
                      |+.|+++.+.
T Consensus       202 L~~L~l~~n~  211 (291)
T 1h6t_A          202 LDVLELFSQE  211 (291)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCEEECcCCc
Confidence            9999987764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=4.1e-19  Score=171.17  Aligned_cols=163  Identities=23%  Similarity=0.320  Sum_probs=148.6

Q ss_pred             cccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCccc
Q psy13376         56 LSLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ  133 (417)
Q Consensus        56 ~~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~  133 (417)
                      ..+.+..+.+..++++  +++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.++
T Consensus        44 ~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~  123 (308)
T 1h6u_A           44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT  123 (308)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCG
T ss_pred             CEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCch
Confidence            3456777888888777  89999999999999999889999999999999999999988999999999999999999998


Q ss_pred             CCccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCC
Q psy13376        134 GLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVP  213 (417)
Q Consensus       134 ~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  213 (417)
                      .+..+++|++|++++|.++.++.+..+++|++|++++|.+++++.   +..+++|+.|++++|.+++++.     +..++
T Consensus       124 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~  195 (308)
T 1h6u_A          124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDISP-----LASLP  195 (308)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GGGCT
T ss_pred             hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcChh-----hcCCC
Confidence            899999999999999999999889999999999999999999765   6889999999999999998875     57899


Q ss_pred             CcccccCcccCHH
Q psy13376        214 QLQCYNNHIILED  226 (417)
Q Consensus       214 ~L~~Ld~~~~~~~  226 (417)
                      +|+.|+++.+...
T Consensus       196 ~L~~L~L~~N~l~  208 (308)
T 1h6u_A          196 NLIEVHLKNNQIS  208 (308)
T ss_dssp             TCCEEECTTSCCC
T ss_pred             CCCEEEccCCccC
Confidence            9999999887643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.79  E-value=4.1e-19  Score=168.71  Aligned_cols=164  Identities=22%  Similarity=0.226  Sum_probs=142.4

Q ss_pred             ccccccCCcchhhh--h--cccccEEEeecCC-CCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCC
Q psy13376         57 SLLQESTNLAEKLQ--I--YKLIKAVNLRIKT-LRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYN  127 (417)
Q Consensus        57 ~l~~~~n~i~~l~~--l--l~~L~~L~Ls~N~-i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N  127 (417)
                      .+.++.|++..+..  +  +++|++|++++|. ++.++.  +..+++|++|++++|.++.++.  +..+++|++|++++|
T Consensus        60 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  139 (285)
T 1ozn_A           60 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN  139 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC
Confidence            44577777777643  2  8899999999997 888843  8899999999999999998853  889999999999999


Q ss_pred             CCCcccC--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        128 RIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       128 ~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      .++.++.  +..+++|++|++++|+++.++.  +..+++|++|++++|.++.+.. ..+..+++|+.|++++|.++.++.
T Consensus       140 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~  218 (285)
T 1ozn_A          140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPT  218 (285)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCCH
Confidence            9998885  8899999999999999998863  8899999999999999998754 467889999999999999998875


Q ss_pred             ccHHHHhcCCCcccccCcccC
Q psy13376        204 VDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       204 ~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                         ..+..+++|+.|+++.+.
T Consensus       219 ---~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          219 ---EALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             ---HHHTTCTTCCEEECCSSC
T ss_pred             ---HHcccCcccCEEeccCCC
Confidence               467889999999988775

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=7.6e-19  Score=164.04  Aligned_cols=164  Identities=20%  Similarity=0.254  Sum_probs=143.7

Q ss_pred             ccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCc
Q psy13376         57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQ  131 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~  131 (417)
                      .+..+.+.+..++.. .++++.|++++|.++.++.  +..+++|++|++++|.++.++.  +..+++|++|++++|.++.
T Consensus        18 ~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~   97 (251)
T 3m19_A           18 EVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS   97 (251)
T ss_dssp             EEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred             EEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc
Confidence            356777778877765 7889999999999999865  8899999999999999998864  8899999999999999998


Q ss_pred             ccC--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHH
Q psy13376        132 IQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGF  207 (417)
Q Consensus       132 l~~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  207 (417)
                      ++.  |..+++|++|+|++|+|+.++.  +..+++|++|++++|.|+.++. ..+..+++|+.|++++|+++.++.   .
T Consensus        98 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~  173 (251)
T 3m19_A           98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPH---G  173 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---T
T ss_pred             cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCH---H
Confidence            884  8899999999999999999874  7889999999999999999876 467889999999999999998876   3


Q ss_pred             HHhcCCCcccccCcccC
Q psy13376        208 AIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       208 ~~~~l~~L~~Ld~~~~~  224 (417)
                      .+..+++|+.|+++.+.
T Consensus       174 ~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          174 AFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TTTTCTTCCEEECCSCC
T ss_pred             HHhCCCCCCEEEeeCCc
Confidence            56778999999988765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=1.2e-18  Score=166.70  Aligned_cols=190  Identities=22%  Similarity=0.188  Sum_probs=158.7

Q ss_pred             ccccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhh--h--cccccEEEee
Q psy13376          6 TVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQ--I--YKLIKAVNLR   81 (417)
Q Consensus         6 ~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~--l--l~~L~~L~Ls   81 (417)
                      .+.+++.+++..++++.++.-             +.    ..+       ..|.++.|++..+..  +  +++|+.|+++
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~-------------~~----~~l-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~   63 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPD-------------LP----KDT-------TILHLSENLLYTFSLATLMPYTRLTQLNLD   63 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSC-------------CC----TTC-------CEEECTTSCCSEEEGGGGTTCTTCCEEECT
T ss_pred             ccCCccEEECCCCCCCcCCCC-------------CC----CCC-------CEEEcCCCcCCccCHHHhhcCCCCCEEECC
Confidence            356778888888888876421             11    111       234677788877643  2  8999999999


Q ss_pred             cCCCCCCCCcCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcCC--
Q psy13376         82 IKTLRKIENLWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--  156 (417)
Q Consensus        82 ~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~--  156 (417)
                      +|.|+.++....+++|++|++++|.++.++. +..+++|++|++++|+++.++.  |..+++|++|++++|+|+.++.  
T Consensus        64 ~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~  143 (290)
T 1p9a_G           64 RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL  143 (290)
T ss_dssp             TSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             CCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh
Confidence            9999999888899999999999999999986 8899999999999999999974  8999999999999999999873  


Q ss_pred             CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       157 l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      +..+++|++|++++|+|+.++. ..+..+++|+.|++++|+++.+|.    .+...++|+.+++..++
T Consensus       144 ~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip~----~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          144 LTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPK----GFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCCCSEEECCSCC
T ss_pred             cccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCccCh----hhcccccCCeEEeCCCC
Confidence            7889999999999999999887 567889999999999999999887    34567789988877654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.1e-18  Score=164.70  Aligned_cols=188  Identities=18%  Similarity=0.233  Sum_probs=156.4

Q ss_pred             cceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhh--h--cccccEEEeecCC
Q psy13376          9 RIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQ--I--YKLIKAVNLRIKT   84 (417)
Q Consensus         9 ~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~--l--l~~L~~L~Ls~N~   84 (417)
                      +.+.++++.+.++.++.-             +. ..+          ..+.++.|++..+..  +  +++|++|++++|.
T Consensus        17 ~~~~l~~~~~~l~~ip~~-------------~~-~~l----------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   72 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSN-------------IP-ADT----------KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK   72 (270)
T ss_dssp             TTTEEECTTSCCSSCCSC-------------CC-TTC----------SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC
T ss_pred             CCCEEEccCCCCCccCCC-------------CC-CCC----------CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc
Confidence            456788888888776431             10 011          234577777877764  3  8999999999999


Q ss_pred             CCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcCC--
Q psy13376         85 LRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--  156 (417)
Q Consensus        85 i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~--  156 (417)
                      ++.++.  |..+++|++|++++|.++.++.  +..+++|++|++++|.++.++.  |..+++|++|++++|.++.++.  
T Consensus        73 l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  152 (270)
T 2o6q_A           73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV  152 (270)
T ss_dssp             CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence            999876  7889999999999999998874  7899999999999999998885  8899999999999999999874  


Q ss_pred             CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       157 l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      +..+++|++|++++|.++.++. ..+..+++|+.|++++|+++.++.   ..+..+++|+.|+++.++
T Consensus       153 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          153 FDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPE---GAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSC
T ss_pred             ccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCCH---HHhccccCCCEEEecCCC
Confidence            8899999999999999999876 467889999999999999998876   346778999999987765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.78  E-value=1.2e-19  Score=160.27  Aligned_cols=151  Identities=29%  Similarity=0.314  Sum_probs=130.9

Q ss_pred             CCCCcCCCcccceEeeeCCCCCCcCCCCCCc-cCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCC--CCCCCCC
Q psy13376         87 KIENLWMMENLVELDLSMNHIGVIENLDQLV-CLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEG--LDHLEKL  163 (417)
Q Consensus        87 ~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~-~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L  163 (417)
                      ..+.+..+++|+.|++++|.++.++.+..+. +|++|++++|.++.++.+..+++|++|++++|.|+.++.  +..+++|
T Consensus        11 ~~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           11 QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             TSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             HHHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            3344667788999999999999887766666 999999999999988779999999999999999998863  4889999


Q ss_pred             cEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHHHHHHHHHHHhh
Q psy13376        164 ELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHMY  237 (417)
Q Consensus       164 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~~~  237 (417)
                      ++|++++|.|+.++.+..+..+++|+.|++++|+++..+.++...+..+|+|+.||++.+...++..++.+|..
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~~~~~~  164 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKG  164 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHHHHHHTTC-
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHHHHHHHHhc
Confidence            99999999999988766788999999999999999999987777899999999999999999888877766543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=5.5e-19  Score=166.54  Aligned_cols=157  Identities=21%  Similarity=0.330  Sum_probs=142.0

Q ss_pred             ccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCc
Q psy13376         59 LQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLD  136 (417)
Q Consensus        59 ~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~  136 (417)
                      .++.+.+..+..+  +++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++|++|++++|+++.++.+.
T Consensus        25 ~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~  104 (263)
T 1xeu_A           25 NLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP  104 (263)
T ss_dssp             HHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCC
T ss_pred             HhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCccc
Confidence            4566677776655  99999999999999999999999999999999999999988999999999999999999999866


Q ss_pred             cccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcc
Q psy13376        137 TLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQ  216 (417)
Q Consensus       137 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~  216 (417)
                      . ++|++|++++|+++.++.+..+++|++|++++|+|++++   .+..+++|+.|++++|++++.+     .+..+++|+
T Consensus       105 ~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~-----~l~~l~~L~  175 (263)
T 1xeu_A          105 S-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTG-----GLTRLKKVN  175 (263)
T ss_dssp             C-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCT-----TSTTCCCCC
T ss_pred             c-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcchH-----HhccCCCCC
Confidence            6 999999999999999999999999999999999999986   4578999999999999999884     357899999


Q ss_pred             cccCcccC
Q psy13376        217 CYNNHIIL  224 (417)
Q Consensus       217 ~Ld~~~~~  224 (417)
                      .|+++.+.
T Consensus       176 ~L~l~~N~  183 (263)
T 1xeu_A          176 WIDLTGQK  183 (263)
T ss_dssp             EEEEEEEE
T ss_pred             EEeCCCCc
Confidence            99987764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.78  E-value=7.6e-19  Score=178.72  Aligned_cols=207  Identities=21%  Similarity=0.300  Sum_probs=133.3

Q ss_pred             cccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccc--cccccccccccccCCcchhhhh--cccccEEEeec
Q psy13376          7 VDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKG--VISENLLSLLQESTNLAEKLQI--YKLIKAVNLRI   82 (417)
Q Consensus         7 ~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~--~~~~~~~~l~~~~n~i~~l~~l--l~~L~~L~Ls~   82 (417)
                      +++++.+++..|.+++++.+..+.+|..+...   .+.+....  ........+.++.|++..+..+  +++|+.|++++
T Consensus       176 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~---~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  252 (466)
T 1o6v_A          176 LTTLERLDISSNKVSDISVLAKLTNLESLIAT---NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN  252 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCSEEECC---SSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred             CCCCCEEECcCCcCCCChhhccCCCCCEEEec---CCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCC
Confidence            45677778888888777766665555444421   11111110  0011122445666666666555  66777777777


Q ss_pred             CCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCC
Q psy13376         83 KTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEK  162 (417)
Q Consensus        83 N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~  162 (417)
                      |.++.++++..+++|++|++++|.++.++.+..+++|+.|++++|+++.++.+..+++|+.|++++|.++.++.+..+++
T Consensus       253 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~  332 (466)
T 1o6v_A          253 NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK  332 (466)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTT
T ss_pred             CccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCcc
Confidence            77777666677777777777777777666666777777777777777766666677777777777777776666667777


Q ss_pred             CcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        163 LELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       163 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      |+.|++++|.+++++   .+..+++|+.|++++|++++.++     +..+++|+.|+++.+.
T Consensus       333 L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          333 LQRLFFYNNKVSDVS---SLANLTNINWLSAGHNQISDLTP-----LANLTRITQLGLNDQA  386 (466)
T ss_dssp             CCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCBCGG-----GTTCTTCCEEECCCEE
T ss_pred             CCEeECCCCccCCch---hhccCCCCCEEeCCCCccCccch-----hhcCCCCCEEeccCCc
Confidence            777777777777653   34667777777777777766654     4567777777666553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=7.2e-19  Score=166.25  Aligned_cols=187  Identities=22%  Similarity=0.271  Sum_probs=150.4

Q ss_pred             ceeeccccccCCCCchhhhHHHHHhcCCCC---CChhhhhccccccccccccccccCCcchhhhh--cccccEEEeecCC
Q psy13376         10 IKKIGLIKDRAGDESTLKNLAQVLQNAPAI---INEDLLSKKGVISENLLSLLQESTNLAEKLQI--YKLIKAVNLRIKT   84 (417)
Q Consensus        10 l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~---~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~   84 (417)
                      +..+.+.++.+.+...+..+.++..+....   .+...+..+    .....+.++.|++..+..+  +++|++|++++|.
T Consensus        21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l----~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~   96 (272)
T 3rfs_A           21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL----PNVRYLALGGNKLHDISALKELTNLTYLILTGNQ   96 (272)
T ss_dssp             HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTTGGGC----TTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC
T ss_pred             HHHHHhcCcccccccccccccceeeeeeCCCCcccccccccC----CCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc
Confidence            344566666777766666665555444221   111112211    1223556888888888777  9999999999999


Q ss_pred             CCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcCC--
Q psy13376         85 LRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--  156 (417)
Q Consensus        85 i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~--  156 (417)
                      ++.++.  +..+++|++|++++|.++.++.  +..+++|++|++++|.++.++.  +..+++|++|++++|+++.++.  
T Consensus        97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  176 (272)
T 3rfs_A           97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV  176 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence            999876  8899999999999999998875  8999999999999999999886  7899999999999999999874  


Q ss_pred             CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376        157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       157 l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~  201 (417)
                      +..+++|++|++++|.++.++. ..+..+++|+.|++++|++...
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          177 FDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCC
T ss_pred             hcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCcccc
Confidence            7899999999999999999876 5678999999999999998754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.78  E-value=4.9e-19  Score=178.80  Aligned_cols=209  Identities=18%  Similarity=0.208  Sum_probs=144.2

Q ss_pred             ccceeeccccccCCCCc--hhhhHHHHHhcCCC-----CCChhhhhccccccccccccccccCCcchhhhh----ccccc
Q psy13376          8 DRIKKIGLIKDRAGDES--TLKNLAQVLQNAPA-----IINEDLLSKKGVISENLLSLLQESTNLAEKLQI----YKLIK   76 (417)
Q Consensus         8 ~~l~~l~l~~n~l~dl~--~L~~l~~L~~~~~~-----~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l----l~~L~   76 (417)
                      ++++.+++..|.++.+.  .+.++.+|..+...     .+....+..+    .....|.++.|++..+..-    +++|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~  139 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL----ANLNTLELFDNRLTTIPNGAFVYLSKLK  139 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC----SSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC----ccCCEEECCCCcCCeeCHhHhhccccCc
Confidence            56778888888887664  23444333333311     1111112222    1123445677777766542    67777


Q ss_pred             EEEeecCCCCCCCC--cCCCcccceEeeeC-CCCCCcCC--CCCCccCceeeeeCCCCCcccCCccccccceeEeecCCC
Q psy13376         77 AVNLRIKTLRKIEN--LWMMENLVELDLSM-NHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI  151 (417)
Q Consensus        77 ~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i  151 (417)
                      .|++++|.|+.++.  |..+++|++|++++ +.++.++.  |.++++|++|++++|.++.+|.+..+++|++|+|++|.|
T Consensus       140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred             eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence            77777777777654  67777777777777 45555553  777888888888888888888888888888888888888


Q ss_pred             CCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        152 ETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       152 ~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      +.++  .+..+++|+.|++++|.|+.++. ..+..+++|+.|+|++|+++.++.   ..+..+++|+.|+++.++
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLPH---DLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCCCT---TTTSSCTTCCEEECCSSC
T ss_pred             CccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCccCh---hHhccccCCCEEEcCCCC
Confidence            8773  57788888888888888888765 467788888888888888888775   345678888888877654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=2.7e-23  Score=211.93  Aligned_cols=163  Identities=20%  Similarity=0.242  Sum_probs=122.9

Q ss_pred             ccccccCCcchhhh--h--cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCC
Q psy13376         57 SLLQESTNLAEKLQ--I--YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNR  128 (417)
Q Consensus        57 ~l~~~~n~i~~l~~--l--l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~  128 (417)
                      .|+++.|+|..+..  +  +++|++|++++|.++.+.+  |..+++|++|+|++|.++.++.  |.++++|++|++++|.
T Consensus        36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  115 (477)
T 2id5_A           36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK  115 (477)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred             EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc
Confidence            34577777777643  2  7788888888888887733  7888888888888888887764  7788888888888888


Q ss_pred             CCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCc
Q psy13376        129 IEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV  204 (417)
Q Consensus       129 l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~  204 (417)
                      ++.++.  |..+++|++|++++|.++.++  .+..+++|++|++++|.++.++. ..+..+++|+.|++++|.+..++. 
T Consensus       116 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~-  193 (477)
T 2id5_A          116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRD-  193 (477)
T ss_dssp             CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECT-
T ss_pred             cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeCh-
Confidence            887653  778888888888888887764  57788888888888888888765 456778888888888888877654 


Q ss_pred             cHHHHhcCCCcccccCccc
Q psy13376        205 DGFAIAMVPQLQCYNNHII  223 (417)
Q Consensus       205 ~~~~~~~l~~L~~Ld~~~~  223 (417)
                        ..+..+++|+.|+++.+
T Consensus       194 --~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          194 --YSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             --TCSCSCTTCCEEEEECC
T ss_pred             --hhcccCcccceeeCCCC
Confidence              23455666666666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.78  E-value=4.2e-19  Score=179.94  Aligned_cols=210  Identities=17%  Similarity=0.193  Sum_probs=142.9

Q ss_pred             ccceeeccccccCCCCc--hhhhHHHHHhcCCCCCChhhhhccc----cccccccccccccCCcchhhhh----cccccE
Q psy13376          8 DRIKKIGLIKDRAGDES--TLKNLAQVLQNAPAIINEDLLSKKG----VISENLLSLLQESTNLAEKLQI----YKLIKA   77 (417)
Q Consensus         8 ~~l~~l~l~~n~l~dl~--~L~~l~~L~~~~~~~~~~~~l~~~~----~~~~~~~~l~~~~n~i~~l~~l----l~~L~~   77 (417)
                      ++++.++++.|.++.+.  .+.++.+|..+.   ++.+.+....    ........|.++.|++..+..-    +++|+.
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~---Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQ---LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEE---CCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEE---CCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence            46888899999888763  344444444333   2221111110    0001123445667777666542    667777


Q ss_pred             EEeecCCCCCCCC--cCCCcccceEeeeC-CCCCCcCC--CCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCC
Q psy13376         78 VNLRIKTLRKIEN--LWMMENLVELDLSM-NHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIE  152 (417)
Q Consensus        78 L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~  152 (417)
                      |++++|.|+.++.  |..+++|+.|++++ |.++.++.  |.++++|++|++++|+++.++.+..+++|++|+|++|.++
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCS
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCc
Confidence            7777777777654  66777777777776 45665553  7777888888888888888877778888888888888887


Q ss_pred             CcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        153 TIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       153 ~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      .++  .+..+++|+.|++++|.++.++. ..+..+++|+.|+|++|.++.++.   ..+..+++|+.|+++.++
T Consensus       232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          232 EIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLPH---DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCT---TSSTTCTTCCEEECCSSC
T ss_pred             ccCcccccCccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCccCh---HHhccccCCCEEEccCCC
Confidence            773  47778888888888888887755 466788888888888888887775   345667888888877654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=2.6e-18  Score=162.17  Aligned_cols=165  Identities=22%  Similarity=0.245  Sum_probs=146.8

Q ss_pred             ccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCc
Q psy13376         57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQ  131 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~  131 (417)
                      .+..+.++++.++.. .++++.|++++|.++.++.  |..+++|++|++++|.++.++.  |..+++|++|++++|.++.
T Consensus        20 ~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~   99 (270)
T 2o6q_A           20 SVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA   99 (270)
T ss_dssp             EEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC
T ss_pred             EEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc
Confidence            456778888887765 7789999999999999975  8999999999999999999875  7899999999999999999


Q ss_pred             ccC--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHH
Q psy13376        132 IQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGF  207 (417)
Q Consensus       132 l~~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  207 (417)
                      ++.  |..+++|++|++++|.++.++.  +..+++|++|++++|.++.++. ..+..+++|+.|++++|.++.++.   .
T Consensus       100 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~  175 (270)
T 2o6q_A          100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPE---G  175 (270)
T ss_dssp             CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---T
T ss_pred             CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeCh---h
Confidence            885  7899999999999999999863  8899999999999999999876 467899999999999999999876   3


Q ss_pred             HHhcCCCcccccCcccCH
Q psy13376        208 AIAMVPQLQCYNNHIILE  225 (417)
Q Consensus       208 ~~~~l~~L~~Ld~~~~~~  225 (417)
                      .+..+++|+.|+++.+..
T Consensus       176 ~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          176 AFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             TTTTCTTCCEEECCSSCC
T ss_pred             HhccCCCcCEEECCCCcC
Confidence            467789999999987753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=2.7e-19  Score=173.01  Aligned_cols=230  Identities=15%  Similarity=0.140  Sum_probs=174.1

Q ss_pred             ccccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhcccc--ccccccccccccCCcchhhhhcccccEEEee
Q psy13376          6 TVDRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGV--ISENLLSLLQESTNLAEKLQIYKLIKAVNLR   81 (417)
Q Consensus         6 ~~~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~--~~~~~~~l~~~~n~i~~l~~ll~~L~~L~Ls   81 (417)
                      ..++++.++++.|.++++.+  +..+.+|..+.   +..+.+.....  .......+.++.|++..+.. .++|+.|+++
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~---Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~L~~L~l~  107 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLN---LSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-GPSIETLHAA  107 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEE---CTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE-CTTCCEEECC
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEE---CCCCcCCcchhhhhcCCCCEEECcCCccccccC-CCCcCEEECC
Confidence            45689999999999999863  55555555444   22222222100  01122345677777776553 5888899999


Q ss_pred             cCCCCCCCCcCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--C-ccccccceeEeecCCCCCcCC
Q psy13376         82 IKTLRKIENLWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--L-DTLVNLKVLNLKMNRIETIEG  156 (417)
Q Consensus        82 ~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~-~~l~~L~~L~Ls~N~i~~l~~  156 (417)
                      +|.++.++. ..+++|++|++++|.++.++  .+..+++|++|++++|.++.++.  + ..+++|++|++++|.|+.++.
T Consensus       108 ~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  186 (317)
T 3o53_A          108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG  186 (317)
T ss_dssp             SSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred             CCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc
Confidence            998887754 34788999999999999886  48889999999999999998753  4 478999999999999999987


Q ss_pred             CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHHHHHHHHHHHh
Q psy13376        157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQHM  236 (417)
Q Consensus       157 l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~~  236 (417)
                      ...+++|++|++++|.++.++.  .+..+++|+.|++++|+++.++.    .+..+++|+.|+++.+....  .....+.
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~l~~----~~~~l~~L~~L~l~~N~~~~--~~~~~~~  258 (317)
T 3o53_A          187 QVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFDLRGNGFHC--GTLRDFF  258 (317)
T ss_dssp             CCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECT----TCCCCTTCCEEECTTCCCBH--HHHHHHH
T ss_pred             ccccccCCEEECCCCcCCcchh--hhcccCcccEEECcCCcccchhh----HhhcCCCCCEEEccCCCccC--cCHHHHH
Confidence            7789999999999999999876  37889999999999999998876    45788999999998877541  1233445


Q ss_pred             hhhhHHHHHhHH
Q psy13376        237 YDVRTETLKDLM  248 (417)
Q Consensus       237 ~~l~~L~~l~~~  248 (417)
                      ..+..++.++..
T Consensus       259 ~~~~~L~~l~l~  270 (317)
T 3o53_A          259 SKNQRVQTVAKQ  270 (317)
T ss_dssp             HTCHHHHHHHHH
T ss_pred             hccccceEEECC
Confidence            566666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.77  E-value=3e-19  Score=171.36  Aligned_cols=215  Identities=20%  Similarity=0.289  Sum_probs=165.0

Q ss_pred             ccccc-ccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhccc------cccccccccccccCCcchhhhh--
Q psy13376          3 IPTTV-DRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKG------VISENLLSLLQESTNLAEKLQI--   71 (417)
Q Consensus         3 ip~~~-~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~------~~~~~~~~l~~~~n~i~~l~~l--   71 (417)
                      +|..+ ++++.+++..|.++.++.  +.++.+|..+.   +..+.+...+      ........+.+++|.+..+...  
T Consensus        22 ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~---L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~   98 (306)
T 2z66_A           22 VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLS---LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL   98 (306)
T ss_dssp             CCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE---CCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEE
T ss_pred             CCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEE---CCCCccCcccCcccccccccccCEEECCCCccccChhhcC
Confidence            45433 579999999999998876  56666665555   2222222110      0012234567888888877653  


Q ss_pred             -cccccEEEeecCCCCCCCC---cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCc--ccC-Cccccccc
Q psy13376         72 -YKLIKAVNLRIKTLRKIEN---LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQ--IQG-LDTLVNLK  142 (417)
Q Consensus        72 -l~~L~~L~Ls~N~i~~i~~---l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~--l~~-~~~l~~L~  142 (417)
                       +++|++|++++|.++.++.   +..+++|++|++++|.++.+.  .+..+++|++|++++|.++.  ++. +..+++|+
T Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  178 (306)
T 2z66_A           99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  178 (306)
T ss_dssp             TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence             8899999999999988753   788999999999999998664  38889999999999999985  554 88899999


Q ss_pred             eeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCC-Cccccc
Q psy13376        143 VLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVP-QLQCYN  219 (417)
Q Consensus       143 ~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-~L~~Ld  219 (417)
                      +|++++|.++.++  .+..+++|++|++++|.++.++. ..+..+++|+.|++++|+++...+   ..+..++ +|+.|+
T Consensus       179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~~L~~L~  254 (306)
T 2z66_A          179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKK---QELQHFPSSLAFLN  254 (306)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCSS---SSCCCCCTTCCEEE
T ss_pred             EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccCH---HHHHhhhccCCEEE
Confidence            9999999999883  58889999999999999998876 356889999999999999988654   2345564 899998


Q ss_pred             CcccC
Q psy13376        220 NHIIL  224 (417)
Q Consensus       220 ~~~~~  224 (417)
                      ++.+.
T Consensus       255 L~~N~  259 (306)
T 2z66_A          255 LTQND  259 (306)
T ss_dssp             CTTCC
T ss_pred             ccCCC
Confidence            88765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=3.3e-19  Score=187.14  Aligned_cols=210  Identities=23%  Similarity=0.250  Sum_probs=121.0

Q ss_pred             ceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhh--cccccEEEeecCCCCC
Q psy13376         10 IKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI--YKLIKAVNLRIKTLRK   87 (417)
Q Consensus        10 l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~   87 (417)
                      +..+.+.++.+.++..+..+.+|..+.........+..++. ......|.++.|++..+..+  +++|+.|+|++|.++.
T Consensus        23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~-l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~  101 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY-LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD  101 (605)
T ss_dssp             HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTTGGG-CTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChHHcc-CCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC
Confidence            33445556666666555555444433311110000111100 01112345666666666555  6667777777777776


Q ss_pred             CCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCCCcEEe
Q psy13376         88 IENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFN  167 (417)
Q Consensus        88 i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~  167 (417)
                      ++.+..+++|+.|+|++|.++.++.+..+++|+.|+|++|.++.++.+..+++|+.|+|++|.|+.++++..+++|+.|+
T Consensus       102 l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~  181 (605)
T 1m9s_A          102 LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY  181 (605)
T ss_dssp             CTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             ChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEE
Confidence            66666677777777777777766666667777777777777766655666677777777777776665566677777777


Q ss_pred             ccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCccc
Q psy13376        168 IAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHII  223 (417)
Q Consensus       168 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~  223 (417)
                      |++|.|++++.   +..+++|+.|+|++|+++..|.+....+..++.++.++...+
T Consensus       182 Ls~N~i~~l~~---l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~  234 (605)
T 1m9s_A          182 LSKNHISDLRA---LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV  234 (605)
T ss_dssp             CCSSCCCBCGG---GTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCSSSCBC
T ss_pred             CcCCCCCCChH---HccCCCCCEEEccCCcCcCCcccccccEEecccccccCCCCc
Confidence            77777766543   456667777777777666655432222233344444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=2.1e-18  Score=159.06  Aligned_cols=165  Identities=22%  Similarity=0.281  Sum_probs=140.0

Q ss_pred             cccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcc
Q psy13376         58 LLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI  132 (417)
Q Consensus        58 l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l  132 (417)
                      +..+.+++..++.. .++|+.|++++|.|+.+++  |..+++|++|+|++|.++.++.  |..+++|++|+|++|+|+.+
T Consensus        24 v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  103 (229)
T 3e6j_A           24 VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL  103 (229)
T ss_dssp             EECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             eEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence            45667777777765 8899999999999999854  8899999999999999999874  78999999999999999999


Q ss_pred             cC--CccccccceeEeecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC----cc
Q psy13376        133 QG--LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN----VD  205 (417)
Q Consensus       133 ~~--~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~----~~  205 (417)
                      +.  |..+++|++|+|++|+|+.+| .+..+++|++|++++|+|+.++. ..+..+++|+.|++++|++.....    ++
T Consensus       104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~  182 (229)
T 3e6j_A          104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCECRDIMYLR  182 (229)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTBGGGHHHH
T ss_pred             ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccCCcchhHHHH
Confidence            86  789999999999999999996 68899999999999999999886 567899999999999999987654    34


Q ss_pred             HHHHhcCCCcccccCccc
Q psy13376        206 GFAIAMVPQLQCYNNHII  223 (417)
Q Consensus       206 ~~~~~~l~~L~~Ld~~~~  223 (417)
                      .+.....+.+..++...+
T Consensus       183 ~~~~~~~~~~~~~~g~~v  200 (229)
T 3e6j_A          183 NWVADHTSIAMRWDGKAV  200 (229)
T ss_dssp             HHHHHCGGGEEEESSSEE
T ss_pred             HHHHhCccccccccCccc
Confidence            445555555655555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.77  E-value=1.4e-18  Score=166.01  Aligned_cols=165  Identities=19%  Similarity=0.198  Sum_probs=147.2

Q ss_pred             ccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCccc
Q psy13376         57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ  133 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~  133 (417)
                      .+....++++.++.. .++++.|++++|.++.++.  +..+++|++|++++|.++.++....+++|++|++++|.++.+|
T Consensus        14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~   93 (290)
T 1p9a_G           14 EVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP   93 (290)
T ss_dssp             EEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCC
T ss_pred             EEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCc
Confidence            446777888887655 7899999999999998853  8999999999999999999987789999999999999999999


Q ss_pred             C-CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHh
Q psy13376        134 G-LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIA  210 (417)
Q Consensus       134 ~-~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~  210 (417)
                      . +..+++|++|++++|+|+.++  .|..+++|++|++++|+++.++. ..+..+++|+.|++++|+++.++.   ..+.
T Consensus        94 ~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~---~~~~  169 (290)
T 1p9a_G           94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELPA---GLLN  169 (290)
T ss_dssp             CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCCCT---TTTT
T ss_pred             hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh-hhcccccCCCEEECCCCcCCccCH---HHhc
Confidence            7 889999999999999999996  48999999999999999999876 567889999999999999999886   4567


Q ss_pred             cCCCcccccCcccCH
Q psy13376        211 MVPQLQCYNNHIILE  225 (417)
Q Consensus       211 ~l~~L~~Ld~~~~~~  225 (417)
                      .+++|+.|+++.+..
T Consensus       170 ~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          170 GLENLDTLLLQENSL  184 (290)
T ss_dssp             TCTTCCEEECCSSCC
T ss_pred             CcCCCCEEECCCCcC
Confidence            799999999887753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=1.9e-18  Score=181.39  Aligned_cols=161  Identities=25%  Similarity=0.308  Sum_probs=148.5

Q ss_pred             cccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCccc
Q psy13376         56 LSLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ  133 (417)
Q Consensus        56 ~~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~  133 (417)
                      ..|.++.|.|..++.+  +++|+.|+|++|.|+.++++..+++|+.|+|++|.++.++.+..+++|+.|+|++|.++.++
T Consensus        46 ~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~  125 (605)
T 1m9s_A           46 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN  125 (605)
T ss_dssp             CCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG
T ss_pred             CEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc
Confidence            3456888999988887  99999999999999999889999999999999999999999999999999999999999998


Q ss_pred             CCccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCC
Q psy13376        134 GLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVP  213 (417)
Q Consensus       134 ~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  213 (417)
                      .+..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.+++   +..+++|+.|+|++|++++++.     +..++
T Consensus       126 ~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~  197 (605)
T 1m9s_A          126 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA-----LAGLK  197 (605)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG-----GTTCT
T ss_pred             cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCChH-----HccCC
Confidence            899999999999999999999889999999999999999998765   6889999999999999998754     67899


Q ss_pred             CcccccCcccC
Q psy13376        214 QLQCYNNHIIL  224 (417)
Q Consensus       214 ~L~~Ld~~~~~  224 (417)
                      +|+.|+++.+.
T Consensus       198 ~L~~L~L~~N~  208 (605)
T 1m9s_A          198 NLDVLELFSQE  208 (605)
T ss_dssp             TCSEEECCSEE
T ss_pred             CCCEEEccCCc
Confidence            99999988765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.77  E-value=9.1e-23  Score=207.99  Aligned_cols=195  Identities=19%  Similarity=0.263  Sum_probs=100.3

Q ss_pred             ccccc-ccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhh--h--cccc
Q psy13376          3 IPTTV-DRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQ--I--YKLI   75 (417)
Q Consensus         3 ip~~~-~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~--l--l~~L   75 (417)
                      ||..+ .+++.++++.|.++.+.+  +.++.+|..+                       .++.|.+..+..  +  +++|
T Consensus        26 ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L-----------------------~L~~n~i~~~~~~~~~~l~~L   82 (477)
T 2id5_A           26 VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEEL-----------------------ELNENIVSAVEPGAFNNLFNL   82 (477)
T ss_dssp             CCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEE-----------------------ECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCCCCCcEEECCCCccceECHhHccCCCCCCEE-----------------------ECCCCccCEeChhhhhCCccC
Confidence            45433 467888888888887642  3333333222                       334444443321  1  4455


Q ss_pred             cEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecC
Q psy13376         76 KAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN  149 (417)
Q Consensus        76 ~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N  149 (417)
                      +.|++++|.++.++.  |..+++|++|++++|.++.+.  .+..+++|++|++++|.++.++.  |..+++|++|++++|
T Consensus        83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A           83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred             CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence            555555555555443  445555555555555555442  14455555555555555544432  444555555555555


Q ss_pred             CCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCC------------------------CcCEEeccCCCCCCCCC
Q psy13376        150 RIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFK------------------------HLGRLNIERNPVCDKEN  203 (417)
Q Consensus       150 ~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~------------------------~L~~L~L~~N~l~~~~~  203 (417)
                      .++.++  .+..+++|+.|++++|.+..++. ..+..++                        +|+.|++++|.++.++.
T Consensus       163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  241 (477)
T 2id5_A          163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY  241 (477)
T ss_dssp             CCSSCCHHHHTTCTTCCEEEEESCCCCEECT-TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred             cCcccChhHhcccCCCcEEeCCCCcCcEeCh-hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence            554443  24444455555555554444333 2233333                        56666666666666553


Q ss_pred             ccHHHHhcCCCcccccCcccC
Q psy13376        204 VDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       204 ~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                         ..+..+++|+.|+++.+.
T Consensus       242 ---~~~~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          242 ---LAVRHLVYLRFLNLSYNP  259 (477)
T ss_dssp             ---HHHTTCTTCCEEECCSSC
T ss_pred             ---HHhcCccccCeeECCCCc
Confidence               355667777777776654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.76  E-value=1.1e-20  Score=185.35  Aligned_cols=163  Identities=24%  Similarity=0.308  Sum_probs=127.8

Q ss_pred             ccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCccc
Q psy13376         59 LQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ  133 (417)
Q Consensus        59 ~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~  133 (417)
                      ..+.+.++.++.- .++|++|++++|.++.++.  +..+++|++|++++|.++.++.  +.++++|++|++++|.++.++
T Consensus        37 ~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  116 (353)
T 2z80_A           37 KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS  116 (353)
T ss_dssp             ECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred             eCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence            4566677777655 6788888888888888765  8888888888888888887743  888888888888888888887


Q ss_pred             C--CccccccceeEeecCCCCCcCC---CCCCCCCcEEeccCC-ccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHH
Q psy13376        134 G--LDTLVNLKVLNLKMNRIETIEG---LDHLEKLELFNIAAN-RIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGF  207 (417)
Q Consensus       134 ~--~~~l~~L~~L~Ls~N~i~~l~~---l~~l~~L~~L~Ls~N-~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  207 (417)
                      .  +..+++|++|++++|+++.++.   +..+++|++|++++| .+..++. ..+..+++|+.|++++|.+....+   .
T Consensus       117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~  192 (353)
T 2z80_A          117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYEP---K  192 (353)
T ss_dssp             HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECT---T
T ss_pred             HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccCH---H
Confidence            5  7788888888888888888764   778888888888888 4777654 456788888888888888877643   2


Q ss_pred             HHhcCCCcccccCcccCH
Q psy13376        208 AIAMVPQLQCYNNHIILE  225 (417)
Q Consensus       208 ~~~~l~~L~~Ld~~~~~~  225 (417)
                      .+..+++|+.|+++.+..
T Consensus       193 ~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          193 SLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             TTTTCSEEEEEEEECSCS
T ss_pred             HHhccccCCeecCCCCcc
Confidence            456778888888877653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=2e-18  Score=159.75  Aligned_cols=190  Identities=15%  Similarity=0.194  Sum_probs=142.2

Q ss_pred             cccccccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhccccccccccccccccCC-cchhhhh----cccc
Q psy13376          3 IPTTVDRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTN-LAEKLQI----YKLI   75 (417)
Q Consensus         3 ip~~~~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~-i~~l~~l----l~~L   75 (417)
                      ||..-.+++.+++..|.++.+++  +.+                +.++       ..+.++.|+ +..+...    +++|
T Consensus        26 ip~~~~~l~~L~l~~n~l~~i~~~~~~~----------------l~~L-------~~L~l~~n~~l~~i~~~~f~~l~~L   82 (239)
T 2xwt_C           26 IPSLPPSTQTLKLIETHLRTIPSHAFSN----------------LPNI-------SRIYVSIDVTLQQLESHSFYNLSKV   82 (239)
T ss_dssp             CCCCCTTCCEEEEESCCCSEECTTTTTT----------------CTTC-------CEEEEECCSSCCEECTTTEESCTTC
T ss_pred             cCCCCCcccEEEEeCCcceEECHHHccC----------------CCCC-------cEEeCCCCCCcceeCHhHcCCCcCC
Confidence            44423467788888888776543  111                1222       234566775 7666642    7888


Q ss_pred             cEEEeec-CCCCCCCC--cCCCcccceEeeeCCCCCCcCCCCCCccCc---eeeeeCC-CCCcccC--Cccccccc-eeE
Q psy13376         76 KAVNLRI-KTLRKIEN--LWMMENLVELDLSMNHIGVIENLDQLVCLE---KLDLGYN-RIEQIQG--LDTLVNLK-VLN  145 (417)
Q Consensus        76 ~~L~Ls~-N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~---~L~Ls~N-~l~~l~~--~~~l~~L~-~L~  145 (417)
                      ++|++++ |.++.++.  |..+++|++|++++|.++.+|.+..+++|+   +|++++| .++.++.  |..+++|+ +|+
T Consensus        83 ~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~  162 (239)
T 2xwt_C           83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK  162 (239)
T ss_dssp             CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred             cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence            8999988 88888764  778888999999999888888777888887   8999998 8888875  88888898 999


Q ss_pred             eecCCCCCcCC--CCCCCCCcEEeccCCc-cCcchhhhhhhCC-CCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376        146 LKMNRIETIEG--LDHLEKLELFNIAANR-IQSLASLVYLRRF-KHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH  221 (417)
Q Consensus       146 Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~-i~~l~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~  221 (417)
                      +++|+++.++.  +.. ++|+.|++++|+ ++.++. ..+..+ ++|+.|++++|+++.++.      ..+++|+.|++.
T Consensus       163 l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~l~~------~~~~~L~~L~l~  234 (239)
T 2xwt_C          163 LYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSVTALPS------KGLEHLKELIAR  234 (239)
T ss_dssp             CCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCCCCCCC------TTCTTCSEEECT
T ss_pred             cCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCccccCCh------hHhccCceeecc
Confidence            99998888763  444 788999999994 888765 466778 889999999999988876      257788877766


Q ss_pred             cc
Q psy13376        222 II  223 (417)
Q Consensus       222 ~~  223 (417)
                      .+
T Consensus       235 ~~  236 (239)
T 2xwt_C          235 NT  236 (239)
T ss_dssp             TC
T ss_pred             Cc
Confidence            54

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.76  E-value=5e-20  Score=178.16  Aligned_cols=208  Identities=16%  Similarity=0.206  Sum_probs=170.7

Q ss_pred             ccccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhh-cccccEEEeecCC
Q psy13376          6 TVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKT   84 (417)
Q Consensus         6 ~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~   84 (417)
                      .+++++.++++.|.++...++..+.+|..+.   ++.+.+..++ .......+.++.|++..+... +++|+.|++++|.
T Consensus        56 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~---Ls~n~l~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~  131 (317)
T 3o53_A           56 PFTKLELLNLSSNVLYETLDLESLSTLRTLD---LNNNYVQELL-VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK  131 (317)
T ss_dssp             TCTTCCEEECTTSCCEEEEEETTCTTCCEEE---CCSSEEEEEE-ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSC
T ss_pred             CCCcCCEEECCCCcCCcchhhhhcCCCCEEE---CcCCcccccc-CCCCcCEEECCCCccCCcCccccCCCCEEECCCCC
Confidence            4578999999999999887777776666666   5555565552 223344677899999888766 9999999999999


Q ss_pred             CCCCCC--cCCCcccceEeeeCCCCCCcC--CC-CCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcC-CCC
Q psy13376         85 LRKIEN--LWMMENLVELDLSMNHIGVIE--NL-DQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIE-GLD  158 (417)
Q Consensus        85 i~~i~~--l~~l~~L~~L~Ls~N~l~~l~--~l-~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~-~l~  158 (417)
                      ++.+++  +..+++|++|++++|.++.++  .+ ..+++|++|++++|.++.++....+++|++|++++|+++.++ .+.
T Consensus       132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  211 (317)
T 3o53_A          132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ  211 (317)
T ss_dssp             CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGG
T ss_pred             CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhc
Confidence            999864  788999999999999999874  24 578999999999999999988777999999999999999985 588


Q ss_pred             CCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376        159 HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH  221 (417)
Q Consensus       159 ~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~  221 (417)
                      .+++|++|++++|.++.++.  .+..+++|+.|++++|++.....  ...+..+++|+.++..
T Consensus       212 ~l~~L~~L~L~~N~l~~l~~--~~~~l~~L~~L~l~~N~~~~~~~--~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          212 SAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             GGTTCSEEECTTSCCCEECT--TCCCCTTCCEEECTTCCCBHHHH--HHHHHTCHHHHHHHHH
T ss_pred             ccCcccEEECcCCcccchhh--HhhcCCCCCEEEccCCCccCcCH--HHHHhccccceEEECC
Confidence            89999999999999999876  56889999999999999983211  2356667777766554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.76  E-value=2.4e-18  Score=175.04  Aligned_cols=208  Identities=22%  Similarity=0.283  Sum_probs=105.7

Q ss_pred             ccccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhc------ccccc-----------------cccccccccc
Q psy13376          6 TVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSK------KGVIS-----------------ENLLSLLQES   62 (417)
Q Consensus         6 ~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~------~~~~~-----------------~~~~~l~~~~   62 (417)
                      .+++++.+++..|.+++++++.++.+|..+..   ..+.+..      +..+.                 .....+.++.
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l---~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~  186 (466)
T 1o6v_A          110 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL---SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS  186 (466)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGTTCTTCSEEEE---EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCCCCEEECCCCCCCCChHHcCCCCCCEEEC---CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcC
Confidence            34667777777777777776665554444331   1111111      10000                 0112233444


Q ss_pred             CCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccc
Q psy13376         63 TNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVN  140 (417)
Q Consensus        63 n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~  140 (417)
                      |++..+..+  +++|+.|++++|.++.+++++.+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++
T Consensus       187 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~  266 (466)
T 1o6v_A          187 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK  266 (466)
T ss_dssp             SCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred             CcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCC
Confidence            555444444  455555555555555554455555555555555555555445555555555555555555544555555


Q ss_pred             cceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccC
Q psy13376        141 LKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNN  220 (417)
Q Consensus       141 L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~  220 (417)
                      |++|++++|.++.++.+..+++|++|++++|.++.++.   +..+++|+.|++++|++++.++     +..+++|+.|++
T Consensus       267 L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l  338 (466)
T 1o6v_A          267 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFF  338 (466)
T ss_dssp             CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEEC
T ss_pred             CCEEECCCCccCccccccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh-----hccCccCCEeEC
Confidence            55555555555555445555555555555555555433   3445555555555555555443     244555555555


Q ss_pred             cccC
Q psy13376        221 HIIL  224 (417)
Q Consensus       221 ~~~~  224 (417)
                      +.+.
T Consensus       339 ~~n~  342 (466)
T 1o6v_A          339 YNNK  342 (466)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            5443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=4.2e-18  Score=153.15  Aligned_cols=145  Identities=19%  Similarity=0.281  Sum_probs=125.7

Q ss_pred             cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCc--ccCCccccccceeEeecC
Q psy13376         72 YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQ--IQGLDTLVNLKVLNLKMN  149 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~--l~~~~~l~~L~~L~Ls~N  149 (417)
                      +++|+.|++++|.++.++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.  .+.+..+++|++|++++|
T Consensus        43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  122 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS  122 (197)
T ss_dssp             HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred             cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence            888999999999999988888999999999999998888888899999999999999986  345889999999999999


Q ss_pred             CCCC--cCCCCCCCCCcEEeccCCc-cCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        150 RIET--IEGLDHLEKLELFNIAANR-IQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       150 ~i~~--l~~l~~l~~L~~L~Ls~N~-i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      .++.  .+.+..+++|++|++++|. +++++.   +..+++|+.|++++|++++++.     +..+++|+.|+++.+.
T Consensus       123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~---l~~l~~L~~L~l~~n~i~~~~~-----l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMP---LKTLPELKSLNIQFDGVHDYRG-----IEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG---GGGCSSCCEEECTTBCCCCCTT-----GGGCSSCCEEEECBC-
T ss_pred             ccCcHhHHHHhhCCCCCEEEccCCCCccccHh---hcCCCCCCEEECCCCCCcChHH-----hccCCCCCEEEeeCcc
Confidence            9987  3468889999999999997 888763   5788999999999999988764     5678999999887765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.75  E-value=6.8e-18  Score=164.13  Aligned_cols=162  Identities=19%  Similarity=0.232  Sum_probs=90.7

Q ss_pred             ccccCCcchhhhh---cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCC-CCcCC-CC---------CCccCceee
Q psy13376         59 LQESTNLAEKLQI---YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHI-GVIEN-LD---------QLVCLEKLD  123 (417)
Q Consensus        59 ~~~~n~i~~l~~l---l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l-~~l~~-l~---------~l~~L~~L~  123 (417)
                      .++.|++..++..   +++|++|++++|.++.++. +..+++|++|++++|.+ ..+|. +.         ++++|++|+
T Consensus       110 ~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~  189 (328)
T 4fcg_A          110 TIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR  189 (328)
T ss_dssp             EEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEE
T ss_pred             ECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEE
Confidence            3444555544332   5666666666666666553 56666666666666433 33432 22         366666666


Q ss_pred             eeCCCCCcccC-CccccccceeEeecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376        124 LGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       124 Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~  201 (417)
                      +++|.++.+|. +..+++|++|++++|.++.++ .+..+++|++|++++|.+....+ ..+..+++|+.|++++|++...
T Consensus       190 L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~  268 (328)
T 4fcg_A          190 LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLT  268 (328)
T ss_dssp             EEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCB
T ss_pred             CcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhh
Confidence            66666666654 566666666666666666654 35566666666666655544322 2445566666666666554442


Q ss_pred             CCccHHHHhcCCCcccccCcccC
Q psy13376        202 ENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       202 ~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      .+   ..+..+++|+.|+++.+.
T Consensus       269 ~p---~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          269 LP---LDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             CC---TTGGGCTTCCEEECTTCT
T ss_pred             cc---hhhhcCCCCCEEeCCCCC
Confidence            22   124556666666666544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.75  E-value=4.6e-22  Score=208.54  Aligned_cols=163  Identities=20%  Similarity=0.227  Sum_probs=87.9

Q ss_pred             cccccCCcchhhhh----cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCC
Q psy13376         58 LLQESTNLAEKLQI----YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIE  130 (417)
Q Consensus        58 l~~~~n~i~~l~~l----l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~  130 (417)
                      +.++.|++..+...    +++|+.|++++|.++.+|. +..+++|++|++++|.++.++  .+..+++|++|++++|.+.
T Consensus       259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  338 (606)
T 3t6q_A          259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR  338 (606)
T ss_dssp             EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred             EEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence            34555555555432    5667777777777766654 666666677777666666552  2555566666666666554


Q ss_pred             -cccC--CccccccceeEeecCCCCCcC----CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        131 -QIQG--LDTLVNLKVLNLKMNRIETIE----GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       131 -~l~~--~~~l~~L~~L~Ls~N~i~~l~----~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                       .++.  +..+++|++|++++|.++.++    .+..+++|++|++++|.+..++. ..+..+++|+.|++++|++.....
T Consensus       339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~  417 (606)
T 3t6q_A          339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-EAFKECPQLELLDLAFTRLKVKDA  417 (606)
T ss_dssp             CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT-TTTTTCTTCSEEECTTCCEECCTT
T ss_pred             cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH-HHhcCCccCCeEECCCCcCCCccc
Confidence             3332  555556666666666555442    34555555555555555554433 234455555555555555543321


Q ss_pred             ccHHHHhcCCCcccccCccc
Q psy13376        204 VDGFAIAMVPQLQCYNNHII  223 (417)
Q Consensus       204 ~~~~~~~~l~~L~~Ld~~~~  223 (417)
                        ...+..+++|+.|+++.+
T Consensus       418 --~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          418 --QSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             --CCTTTTCTTCCEEECTTC
T ss_pred             --chhhhCcccCCEEECCCC
Confidence              012334445555544444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=1.3e-18  Score=178.23  Aligned_cols=230  Identities=15%  Similarity=0.142  Sum_probs=173.4

Q ss_pred             cccccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhcccc--ccccccccccccCCcchhhhhcccccEEEe
Q psy13376          5 TTVDRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGV--ISENLLSLLQESTNLAEKLQIYKLIKAVNL   80 (417)
Q Consensus         5 ~~~~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~--~~~~~~~l~~~~n~i~~l~~ll~~L~~L~L   80 (417)
                      ...++++.++++.|.++++.+  +..+.+|..+.   ++.+.+.....  .......|.+++|.|..+.. .++|+.|++
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~---Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-~~~L~~L~L  106 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLN---LSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-GPSIETLHA  106 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEE---CTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-CTTCCEEEC
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEE---eeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-CCCcCEEEC
Confidence            345589999999999998863  55555555554   33332222100  01122355678887776554 488999999


Q ss_pred             ecCCCCCCCCcCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--Cc-cccccceeEeecCCCCCcC
Q psy13376         81 RIKTLRKIENLWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LD-TLVNLKVLNLKMNRIETIE  155 (417)
Q Consensus        81 s~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~-~l~~L~~L~Ls~N~i~~l~  155 (417)
                      ++|.|+.++. ..+++|+.|++++|.++.++  .++.+++|++|++++|.++.++.  +. .+++|++|+|++|.|+.++
T Consensus       107 ~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~  185 (487)
T 3oja_A          107 ANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (487)
T ss_dssp             CSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             cCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence            9999988764 35689999999999999875  48899999999999999997543  54 7899999999999999998


Q ss_pred             CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHHHHHHHHHHH
Q psy13376        156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQH  235 (417)
Q Consensus       156 ~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~  235 (417)
                      +...+++|++|++++|.++.+++  .+..+++|+.|++++|.++.+|.    .+..+++|+.|+++.+.....  ....+
T Consensus       186 ~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp~----~l~~l~~L~~L~l~~N~l~c~--~~~~~  257 (487)
T 3oja_A          186 GQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFDLRGNGFHCG--TLRDF  257 (487)
T ss_dssp             CCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECT----TCCCCTTCCEEECTTCCBCHH--HHHHH
T ss_pred             ccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCcccch----hhccCCCCCEEEcCCCCCcCc--chHHH
Confidence            88889999999999999999876  37889999999999999998876    357789999999888764311  22233


Q ss_pred             hhhhhHHHHHhH
Q psy13376        236 MYDVRTETLKDL  247 (417)
Q Consensus       236 ~~~l~~L~~l~~  247 (417)
                      ...+..+..+..
T Consensus       258 ~~~l~~L~~l~~  269 (487)
T 3oja_A          258 FSKNQRVQTVAK  269 (487)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HHhCCCCcEEec
Confidence            445555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=6.3e-18  Score=152.02  Aligned_cols=142  Identities=20%  Similarity=0.260  Sum_probs=125.4

Q ss_pred             cccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCC--cCCCCCCccCceeeeeCCCCCc
Q psy13376         56 LSLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGV--IENLDQLVCLEKLDLGYNRIEQ  131 (417)
Q Consensus        56 ~~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~  131 (417)
                      ..+.++.|.+..++++  +++|+.|++++|.++.++.+..+++|++|++++|.++.  .+.+..+++|++|++++|.++.
T Consensus        47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  126 (197)
T 4ezg_A           47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD  126 (197)
T ss_dssp             CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred             cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence            4566888999988877  99999999999999999889999999999999999996  4469999999999999999997


Q ss_pred             --ccCCccccccceeEeecCC-CCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCC
Q psy13376        132 --IQGLDTLVNLKVLNLKMNR-IETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCD  200 (417)
Q Consensus       132 --l~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~  200 (417)
                        .+.+..+++|++|++++|. ++.++.+..+++|++|++++|.+++++   .+..+++|+.|++++|+|..
T Consensus       127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC----
T ss_pred             HhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcccCC
Confidence              3348899999999999998 999999999999999999999999976   45789999999999999865

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.74  E-value=7.5e-22  Score=199.61  Aligned_cols=141  Identities=22%  Similarity=0.389  Sum_probs=69.4

Q ss_pred             ccCCcchhhhhcccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCC-CcC--CCCCCccCceeeeeCCCCCccc-C
Q psy13376         61 ESTNLAEKLQIYKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIG-VIE--NLDQLVCLEKLDLGYNRIEQIQ-G  134 (417)
Q Consensus        61 ~~n~i~~l~~ll~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~l~-~  134 (417)
                      ..+.++.++.+.+++++|++++|.|+.+.+  +..+++|++|++++|.+. .++  .|.++++|++|++++|.++.++ .
T Consensus        18 ~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~   97 (455)
T 3v47_A           18 INRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG   97 (455)
T ss_dssp             CSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred             CCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh
Confidence            333444444434455555555555554421  555555555555555554 332  2555555555555555555442 1


Q ss_pred             -CccccccceeEeecCCCCC--cCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376        135 -LDTLVNLKVLNLKMNRIET--IEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       135 -~~~l~~L~~L~Ls~N~i~~--l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~  201 (417)
                       |..+++|++|++++|.++.  .+.  +..+++|++|++++|.++.+.+...+..+++|+.|++++|.+...
T Consensus        98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence             5555555555555555544  112  455555555555555555543212244555555555555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.74  E-value=2.2e-18  Score=168.83  Aligned_cols=216  Identities=16%  Similarity=0.180  Sum_probs=118.7

Q ss_pred             ccccc-ccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhcccc--c--cccccccccccCCcchhhhh----
Q psy13376          3 IPTTV-DRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGV--I--SENLLSLLQESTNLAEKLQI----   71 (417)
Q Consensus         3 ip~~~-~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~--~--~~~~~~l~~~~n~i~~l~~l----   71 (417)
                      ||..+ ++++.+++..|.+++++.  +.++.+|..+.   +..+.+.....  .  ......+.++.|++..+..-    
T Consensus        46 iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~---L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  122 (353)
T 2z80_A           46 IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALV---LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP  122 (353)
T ss_dssp             CCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE---CTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred             ccccccccCcEEECCCCcCcccCHHHhccCCCCCEEE---CCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence            44433 478888999888887654  44444443333   11111111100  0  01112344555666555432    


Q ss_pred             cccccEEEeecCCCCCCCC---cCCCcccceEeeeCC-CCCCcC--CCCCCccCceeeeeCCCCCccc-C-Cccccccce
Q psy13376         72 YKLIKAVNLRIKTLRKIEN---LWMMENLVELDLSMN-HIGVIE--NLDQLVCLEKLDLGYNRIEQIQ-G-LDTLVNLKV  143 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~---l~~l~~L~~L~Ls~N-~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~-~-~~~l~~L~~  143 (417)
                      +++|++|++++|.++.++.   +..+++|++|++++| .++.++  .+.++++|++|++++|.++.+. . +..+++|++
T Consensus       123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  202 (353)
T 2z80_A          123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH  202 (353)
T ss_dssp             CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred             CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence            5566666666666665543   555666666666666 355443  2556666666666666665542 2 555666666


Q ss_pred             eEeecCCCCCcCC--CCCCCCCcEEeccCCccCcchh------------------------------hhhhhCCCCcCEE
Q psy13376        144 LNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLAS------------------------------LVYLRRFKHLGRL  191 (417)
Q Consensus       144 L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~------------------------------~~~l~~l~~L~~L  191 (417)
                      |++++|.++.++.  +..+++|++|++++|.++.++.                              ...+..+++|+.|
T Consensus       203 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L  282 (353)
T 2z80_A          203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL  282 (353)
T ss_dssp             EEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred             ecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence            6666666655542  3345666666666666654320                              0134566677777


Q ss_pred             eccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        192 NIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       192 ~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      ++++|.++.++.   ..+..+++|+.|+++.++
T Consensus       283 ~Ls~N~l~~i~~---~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          283 EFSRNQLKSVPD---GIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             ECCSSCCCCCCT---TTTTTCTTCCEEECCSSC
T ss_pred             ECCCCCCCccCH---HHHhcCCCCCEEEeeCCC
Confidence            777777776665   234566777777766654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.73  E-value=3.2e-21  Score=202.17  Aligned_cols=212  Identities=19%  Similarity=0.257  Sum_probs=131.6

Q ss_pred             cceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhcccc---ccccccccccccCCcchhhhh----cccccEEE
Q psy13376          9 RIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGV---ISENLLSLLQESTNLAEKLQI----YKLIKAVN   79 (417)
Q Consensus         9 ~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~---~~~~~~~l~~~~n~i~~l~~l----l~~L~~L~   79 (417)
                      .++.+++..|.++++++  +..+.+|..+.   ++.+.+..++.   .......+.++.|++..+...    +++|+.|+
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  331 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELD---LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS  331 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEE---CTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEe---ccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence            67788888888887765  44444444333   22222221100   001123445666777665332    67777777


Q ss_pred             eecCCCC-CCCC--cCCCcccceEeeeCCCCCCcC----CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCC
Q psy13376         80 LRIKTLR-KIEN--LWMMENLVELDLSMNHIGVIE----NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR  150 (417)
Q Consensus        80 Ls~N~i~-~i~~--l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~  150 (417)
                      +++|.+. .++.  +..+++|++|++++|.++.+.    .+..+++|++|++++|.++.++.  +..+++|++|++++|.
T Consensus       332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            7777766 3332  667777777777777777553    36777777777777777766542  6677777777777777


Q ss_pred             CCCcC---CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        151 IETIE---GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       151 i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      ++...   .+..+++|++|++++|.++..+. ..+..+++|+.|++++|++.+........+..+++|+.|+++.+.
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~  487 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD  487 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCCCBTTCT-TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred             CCCcccchhhhCcccCCEEECCCCccCCcCH-HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence            76552   26677777777777777776544 356677777777777777765211011245667777777777665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=1.2e-17  Score=158.48  Aligned_cols=165  Identities=19%  Similarity=0.244  Sum_probs=142.8

Q ss_pred             ccccccCCcchhhh--h--cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCC-CCCcC--CCCCCccCceeeeeCC
Q psy13376         57 SLLQESTNLAEKLQ--I--YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNH-IGVIE--NLDQLVCLEKLDLGYN  127 (417)
Q Consensus        57 ~l~~~~n~i~~l~~--l--l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~Ls~N  127 (417)
                      .+.++.|++..+..  +  +++|++|++++|.++.+..  +..+++|++|++++|. ++.++  .+..+++|++|++++|
T Consensus        36 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n  115 (285)
T 1ozn_A           36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (285)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence            34577778877764  2  8899999999999998843  8899999999999997 88884  3889999999999999


Q ss_pred             CCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        128 RIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       128 ~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      .++.++.  +..+++|++|++++|.++.++  .+..+++|++|++++|.++.++. ..+..+++|+.|++++|.++...+
T Consensus       116 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~  194 (285)
T 1ozn_A          116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHP  194 (285)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcccccCH
Confidence            9998864  889999999999999999986  38899999999999999999876 467889999999999999988744


Q ss_pred             ccHHHHhcCCCcccccCcccCH
Q psy13376        204 VDGFAIAMVPQLQCYNNHIILE  225 (417)
Q Consensus       204 ~~~~~~~~l~~L~~Ld~~~~~~  225 (417)
                         ..+..+++|+.|+++.+..
T Consensus       195 ---~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          195 ---HAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             ---TTTTTCTTCCEEECCSSCC
T ss_pred             ---hHccCcccccEeeCCCCcC
Confidence               3567899999999988764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=2e-17  Score=154.30  Aligned_cols=169  Identities=23%  Similarity=0.296  Sum_probs=142.4

Q ss_pred             ccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhh----cccccEEEeecC
Q psy13376          8 DRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI----YKLIKAVNLRIK   83 (417)
Q Consensus         8 ~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l----l~~L~~L~Ls~N   83 (417)
                      ...+.+++..+.++.++.-             +. ..+          ..+.++.|++..+...    +++|++|++++|
T Consensus        14 ~~~~~l~~~~~~l~~~p~~-------------~~-~~l----------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   69 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSG-------------IP-ADT----------EKLDLQSTGLATLSDATFRGLTKLTWLNLDYN   69 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSC-------------CC-TTC----------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCCeEEecCCCCccccCCC-------------CC-CCC----------CEEEccCCCcCccCHhHhcCcccCCEEECCCC
Confidence            3456778888877766531             11 011          2345777778776543    899999999999


Q ss_pred             CCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--
Q psy13376         84 TLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--  155 (417)
Q Consensus        84 ~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--  155 (417)
                      .|+.++.  +..+++|++|++++|.++.++.  +..+++|++|++++|.|+.++.  |..+++|++|+|++|+|+.++  
T Consensus        70 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  149 (251)
T 3m19_A           70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG  149 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH
Confidence            9999865  8899999999999999998873  8899999999999999999986  789999999999999999997  


Q ss_pred             CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376        156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       156 ~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~  201 (417)
                      .+..+++|++|++++|.++.++. ..+..+++|+.|++++|++...
T Consensus       150 ~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          150 AFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCTT
T ss_pred             HcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCceeCC
Confidence            48899999999999999999876 5678999999999999999876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=1.2e-17  Score=153.12  Aligned_cols=145  Identities=22%  Similarity=0.338  Sum_probs=119.2

Q ss_pred             cccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcc
Q psy13376         58 LLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQI  132 (417)
Q Consensus        58 l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l  132 (417)
                      +....+.++.++.. .++++.|++++|.|+.++.  |..+++|++|+|++|.++.+.  .|.++++|++|+|++|.|+.+
T Consensus        16 v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l   95 (220)
T 2v9t_B           16 VDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL   95 (220)
T ss_dssp             EECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred             EEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence            34566667766654 6788999999999988864  888889999999999998773  388889999999999999988


Q ss_pred             cC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        133 QG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       133 ~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      +.  |..+++|++|+|++|+|+.++  .+..+++|++|++++|.|+.++. ..+..+++|+.|++++|++.....
T Consensus        96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B           96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcCCCCc
Confidence            85  788889999999999998884  58888899999999999988876 467788889999999998876544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=3.7e-19  Score=182.37  Aligned_cols=207  Identities=16%  Similarity=0.205  Sum_probs=168.2

Q ss_pred             ccccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhh-cccccEEEeecCC
Q psy13376          6 TVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKT   84 (417)
Q Consensus         6 ~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~   84 (417)
                      .+++++.++++.|.+++..++..+.+|..+.   ++.+.+..++ .......|.++.|.+..+... +++|+.|++++|.
T Consensus        56 ~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~---Ls~N~l~~l~-~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~  131 (487)
T 3oja_A           56 PFTKLELLNLSSNVLYETLDLESLSTLRTLD---LNNNYVQELL-VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK  131 (487)
T ss_dssp             TCTTCCEEECTTSCCEEEEECTTCTTCCEEE---CCSSEEEEEE-ECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSC
T ss_pred             CCCCCCEEEeeCCCCCCCcccccCCCCCEEE---ecCCcCCCCC-CCCCcCEEECcCCcCCCCCccccCCCCEEECCCCC
Confidence            4578999999999999887777777776666   5556666552 223445678999999888776 9999999999999


Q ss_pred             CCCCCC--cCCCcccceEeeeCCCCCCcC--CCC-CCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcC-CCC
Q psy13376         85 LRKIEN--LWMMENLVELDLSMNHIGVIE--NLD-QLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIE-GLD  158 (417)
Q Consensus        85 i~~i~~--l~~l~~L~~L~Ls~N~l~~l~--~l~-~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~-~l~  158 (417)
                      ++.+++  +..+++|+.|++++|.++.++  .+. .+++|++|+|++|.++.+++...+++|++|+|++|.|+.++ .+.
T Consensus       132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  211 (487)
T 3oja_A          132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ  211 (487)
T ss_dssp             CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHc
Confidence            999854  788999999999999999754  354 78999999999999999988778999999999999999985 688


Q ss_pred             CCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccC
Q psy13376        159 HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNN  220 (417)
Q Consensus       159 ~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~  220 (417)
                      .+++|++|++++|.++.+|.  .+..+++|+.|++++|++.+...  ...+..++.|+.++.
T Consensus       212 ~l~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~l~~N~l~c~~~--~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          212 SAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVAK  269 (487)
T ss_dssp             GGTTCSEEECTTSCCCEECT--TCCCCTTCCEEECTTCCBCHHHH--HHHHTTCHHHHHHHH
T ss_pred             CCCCccEEEecCCcCcccch--hhccCCCCCEEEcCCCCCcCcch--HHHHHhCCCCcEEec
Confidence            99999999999999999876  46889999999999999983211  123445555555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.73  E-value=1.2e-17  Score=162.20  Aligned_cols=160  Identities=20%  Similarity=0.240  Sum_probs=100.8

Q ss_pred             ccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCC--c-C-CCCCCccCceeeeeCCCC
Q psy13376         57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGV--I-E-NLDQLVCLEKLDLGYNRI  129 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~--l-~-~l~~l~~L~~L~Ls~N~l  129 (417)
                      .+.++.|++..++.. .++|++|++++|.++.++.  +..+++|+.|++++|.++.  + + .+..+ +|++|++++|.+
T Consensus       106 ~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          106 KLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             EEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             EEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            344555555555444 5566666666666666544  5566666666666666643  1 1 24444 566666666666


Q ss_pred             CcccC-CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccH
Q psy13376        130 EQIQG-LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDG  206 (417)
Q Consensus       130 ~~l~~-~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~  206 (417)
                      +.+|. +.  ++|++|++++|.++.++  .+..+++|++|++++|.++.++. ..+..+++|+.|++++|+++.+|.   
T Consensus       185 ~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~---  258 (332)
T 2ft3_A          185 TGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLSRVPA---  258 (332)
T ss_dssp             SSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCCBCCT---
T ss_pred             CccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCeecCh---
Confidence            65554 22  56777777777777664  46777777777777777777654 355677777777777777777665   


Q ss_pred             HHHhcCCCcccccCcccC
Q psy13376        207 FAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       207 ~~~~~l~~L~~Ld~~~~~  224 (417)
                       .+..+++|+.|+++.+.
T Consensus       259 -~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          259 -GLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             -TGGGCTTCCEEECCSSC
T ss_pred             -hhhcCccCCEEECCCCC
Confidence             35667777777776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.73  E-value=1.6e-17  Score=161.54  Aligned_cols=164  Identities=16%  Similarity=0.201  Sum_probs=129.1

Q ss_pred             cccccccCCcchhhhh---cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCC-
Q psy13376         56 LSLLQESTNLAEKLQI---YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRI-  129 (417)
Q Consensus        56 ~~l~~~~n~i~~l~~l---l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l-  129 (417)
                      ..+.++.|++..++..   +++|++|++++|.++.++. +..+++|++|++++|.++.+|. +..+++|++|++++|++ 
T Consensus        84 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~  163 (328)
T 4fcg_A           84 VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL  163 (328)
T ss_dssp             CEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC
T ss_pred             eEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc
Confidence            4566777888777653   7888889999888888876 8888889999999988888874 88888899999988654 


Q ss_pred             CcccC-Cc---------cccccceeEeecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCC
Q psy13376        130 EQIQG-LD---------TLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV  198 (417)
Q Consensus       130 ~~l~~-~~---------~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l  198 (417)
                      ..+|. +.         .+++|++|++++|.++.+| .+..+++|++|++++|.++.++.  .+..+++|+.|++++|++
T Consensus       164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~--~l~~l~~L~~L~Ls~n~~  241 (328)
T 4fcg_A          164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLRGCTA  241 (328)
T ss_dssp             CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG--GGGGCTTCCEEECTTCTT
T ss_pred             cccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch--hhccCCCCCEEECcCCcc
Confidence            45554 33         4888899999999888876 57888889999999998888765  467888899999998877


Q ss_pred             CCCCCccHHHHhcCCCcccccCcccC
Q psy13376        199 CDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       199 ~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      ....+   ..+..+++|+.|+++.+.
T Consensus       242 ~~~~p---~~~~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          242 LRNYP---PIFGGRAPLKRLILKDCS  264 (328)
T ss_dssp             CCBCC---CCTTCCCCCCEEECTTCT
T ss_pred             hhhhH---HHhcCCCCCCEEECCCCC
Confidence            66433   245678888888888765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.73  E-value=3.5e-18  Score=161.56  Aligned_cols=195  Identities=16%  Similarity=0.197  Sum_probs=148.7

Q ss_pred             Ccccccc-cceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhh--h--ccc
Q psy13376          2 DIPTTVD-RIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQ--I--YKL   74 (417)
Q Consensus         2 ~ip~~~~-~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~--l--l~~   74 (417)
                      .||..++ +++.++++.|.++++.+  +.+                +.++       ..+.++.|++..+..  +  +++
T Consensus        21 ~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~----------------l~~L-------~~L~l~~n~l~~~~~~~~~~l~~   77 (276)
T 2z62_A           21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFS----------------FPEL-------QVLDLSRCEIQTIEDGAYQSLSH   77 (276)
T ss_dssp             SCCSSSCTTCCEEECTTCCCCEECTTTTTT----------------CTTC-------SEEECTTCCCCEECTTTTTTCTT
T ss_pred             ccCCCCCCCccEEECCCCcccccCHhHhcc----------------ccCC-------cEEECCCCcCCccCHHHccCCcC
Confidence            3555443 58899999999887653  221                1222       234566777776654  2  788


Q ss_pred             ccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCc--ccC-CccccccceeEee
Q psy13376         75 IKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQ--IQG-LDTLVNLKVLNLK  147 (417)
Q Consensus        75 L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~--l~~-~~~l~~L~~L~Ls  147 (417)
                      |+.|++++|.++.++.  +..+++|++|++++|.++.++.  +..+++|++|++++|.++.  +|. +..+++|++|+++
T Consensus        78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls  157 (276)
T 2z62_A           78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             CCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence            9999999999988763  8889999999999999998864  8889999999999999987  443 8888999999999


Q ss_pred             cCCCCCcC--CCCCCCCCc----EEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376        148 MNRIETIE--GLDHLEKLE----LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH  221 (417)
Q Consensus       148 ~N~i~~l~--~l~~l~~L~----~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~  221 (417)
                      +|+++.++  .+..+++|+    .|++++|.++.++. .. ....+|+.|++++|.++.++.   ..+..+++|+.|+++
T Consensus       158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~-~~-~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~  232 (276)
T 2z62_A          158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GA-FKEIRLKELALDTNQLKSVPD---GIFDRLTSLQKIWLH  232 (276)
T ss_dssp             SSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT-TS-SCSCCEEEEECCSSCCSCCCT---TTTTTCCSCCEEECC
T ss_pred             CCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc-cc-cCCCcccEEECCCCceeecCH---hHhcccccccEEEcc
Confidence            99998875  355555555    89999999998765 23 334589999999999998876   355778999999888


Q ss_pred             ccC
Q psy13376        222 IIL  224 (417)
Q Consensus       222 ~~~  224 (417)
                      .++
T Consensus       233 ~N~  235 (276)
T 2z62_A          233 TNP  235 (276)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.73  E-value=1.5e-17  Score=161.30  Aligned_cols=208  Identities=17%  Similarity=0.194  Sum_probs=130.4

Q ss_pred             ccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhccc----cccccccccccccCCcchhhhh-cccccEEEe
Q psy13376          8 DRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKG----VISENLLSLLQESTNLAEKLQI-YKLIKAVNL   80 (417)
Q Consensus         8 ~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~----~~~~~~~~l~~~~n~i~~l~~l-l~~L~~L~L   80 (417)
                      ++++.++++.|.++++.+  +.++.+|..+..   ..+.+....    ........+.++.|++..++.. .++|+.|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLIL---INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC---CSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEEC---CCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEEC
Confidence            467778888888887654  444444444331   111111110    0001122445666666665544 667777777


Q ss_pred             ecCCCCCCCC--cCCCcccceEeeeCCCCCC--c-C-CCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCc
Q psy13376         81 RIKTLRKIEN--LWMMENLVELDLSMNHIGV--I-E-NLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETI  154 (417)
Q Consensus        81 s~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~--l-~-~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l  154 (417)
                      ++|.++.++.  +..+++|+.|++++|.++.  + + .+..+++|++|++++|.++.+|... .++|++|++++|.++.+
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~  207 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKV  207 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEE
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCcc
Confidence            7777776654  6677777777777777753  2 1 2667777777777777777766411 16777777777777766


Q ss_pred             C--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        155 E--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       155 ~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      +  .+..+++|++|++++|.++.++. ..+..+++|+.|++++|+++.+|.    .+..+++|+.|+++.+.
T Consensus       208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          208 DAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVPG----GLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSSCCT----TTTTCSSCCEEECCSSC
T ss_pred             CHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCccCCh----hhccCCCcCEEECCCCc
Confidence            3  46777777777777777777654 355677777777777777777665    34567777777776654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.73  E-value=1.5e-17  Score=174.90  Aligned_cols=116  Identities=23%  Similarity=0.184  Sum_probs=73.1

Q ss_pred             cccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccC
Q psy13376         95 ENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQ  174 (417)
Q Consensus        95 ~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~  174 (417)
                      ++|+.|++++|.++.++..  +++|+.|++++|.++.++..  +++|++|++++|.|+.+|  ..+++|++|++++|.|+
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~  254 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLT  254 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCS
T ss_pred             CCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCC
Confidence            3344444444444433321  23444444444444444321  256777777777777776  45677888888888887


Q ss_pred             cchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCH
Q psy13376        175 SLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILE  225 (417)
Q Consensus       175 ~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~  225 (417)
                      .++.     .+++|+.|++++|.++.+|.    .+..+++|+.|+++.+..
T Consensus       255 ~lp~-----~~~~L~~L~Ls~N~L~~lp~----~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          255 SLPM-----LPSGLLSLSVYRNQLTRLPE----SLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CCCC-----CCTTCCEEECCSSCCCSCCG----GGGGSCTTCEEECCSCCC
T ss_pred             cCCc-----ccccCcEEeCCCCCCCcCCH----HHhhccccCEEEecCCCC
Confidence            7664     46788888888888887765    467788888888877664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.72  E-value=7.5e-18  Score=167.17  Aligned_cols=209  Identities=17%  Similarity=0.211  Sum_probs=119.0

Q ss_pred             cccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhccc----cccccccccccccCCcchhhhh----ccccc
Q psy13376          7 VDRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKG----VISENLLSLLQESTNLAEKLQI----YKLIK   76 (417)
Q Consensus         7 ~~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~----~~~~~~~~l~~~~n~i~~l~~l----l~~L~   76 (417)
                      +.+++.+++..+.++.++.  +..+++|..+.   +..+.+....    ........+.++.|++..+..-    +++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~---L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLN---LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEE---CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEE---CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            4667777777777777665  44444443333   1111111110    0001123445666777666432    67777


Q ss_pred             EEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccCCcccc-------------
Q psy13376         77 AVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLV-------------  139 (417)
Q Consensus        77 ~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~~~~l~-------------  139 (417)
                      +|++++|.++.++.  +..+++|++|++++|.++.++.  +..+++|++|++++|.++.++ +..++             
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCCS
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeeccccccc
Confidence            77777777777765  5677777777777777776643  677777777777777776543 12222             


Q ss_pred             ---------------------------ccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEe
Q psy13376        140 ---------------------------NLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLN  192 (417)
Q Consensus       140 ---------------------------~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~  192 (417)
                                                 +|+.|++++|.++..+.+..+++|++|++++|.++.+.. ..+..+++|+.|+
T Consensus       200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~  278 (390)
T 3o6n_A          200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLY  278 (390)
T ss_dssp             EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEE
T ss_pred             ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcCh-hHccccccCCEEE
Confidence                                       344444444444444445555666666666666665533 3455666666666


Q ss_pred             ccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        193 IERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       193 L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      +++|+++.++.    ....+++|+.|+++.+.
T Consensus       279 L~~n~l~~~~~----~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          279 ISNNRLVALNL----YGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             CCSSCCCEEEC----SSSCCTTCCEEECCSSC
T ss_pred             CCCCcCcccCc----ccCCCCCCCEEECCCCc
Confidence            66666665544    22456666666666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=8.8e-18  Score=155.46  Aligned_cols=163  Identities=14%  Similarity=0.185  Sum_probs=138.3

Q ss_pred             ccccccCCcchhhhh----cccccEEEeecCC-CCCCCC--cCCCcccceEeeeC-CCCCCcCC--CCCCccCceeeeeC
Q psy13376         57 SLLQESTNLAEKLQI----YKLIKAVNLRIKT-LRKIEN--LWMMENLVELDLSM-NHIGVIEN--LDQLVCLEKLDLGY  126 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l----l~~L~~L~Ls~N~-i~~i~~--l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~  126 (417)
                      .+.++.|++..+..-    +++|+.|++++|. ++.++.  |..+++|++|++++ |.++.++.  |.++++|++|++++
T Consensus        35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~  114 (239)
T 2xwt_C           35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN  114 (239)
T ss_dssp             EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE
T ss_pred             EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC
Confidence            456788888887652    8899999999997 988864  88999999999998 99998873  88999999999999


Q ss_pred             CCCCcccCCccccccc---eeEeecC-CCCCcCC--CCCCCCCc-EEeccCCccCcchhhhhhhCCCCcCEEeccCCC-C
Q psy13376        127 NRIEQIQGLDTLVNLK---VLNLKMN-RIETIEG--LDHLEKLE-LFNIAANRIQSLASLVYLRRFKHLGRLNIERNP-V  198 (417)
Q Consensus       127 N~l~~l~~~~~l~~L~---~L~Ls~N-~i~~l~~--l~~l~~L~-~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~-l  198 (417)
                      |.++.+|.+..+++|+   +|++++| .++.++.  +..+++|+ +|++++|.++.++. ..+.. ++|+.|++++|+ +
T Consensus       115 n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l  192 (239)
T 2xwt_C          115 TGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYL  192 (239)
T ss_dssp             ECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTC
T ss_pred             CCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCc
Confidence            9999999888888888   9999999 9998863  88999999 99999999998876 34445 789999999995 8


Q ss_pred             CCCCCccHHHHhcC-CCcccccCcccC
Q psy13376        199 CDKENVDGFAIAMV-PQLQCYNNHIIL  224 (417)
Q Consensus       199 ~~~~~~~~~~~~~l-~~L~~Ld~~~~~  224 (417)
                      +.++.   ..+..+ ++|+.|+++.+.
T Consensus       193 ~~i~~---~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          193 TVIDK---DAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             CEECT---TTTTTCSBCCSEEECTTCC
T ss_pred             ccCCH---HHhhccccCCcEEECCCCc
Confidence            88765   345677 899999988765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.72  E-value=2e-17  Score=167.00  Aligned_cols=164  Identities=24%  Similarity=0.273  Sum_probs=131.1

Q ss_pred             ccccccCCcchhhhh----cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeC-C
Q psy13376         57 SLLQESTNLAEKLQI----YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGY-N  127 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l----l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~-N  127 (417)
                      .|.++.|+|..+..-    +++|+.|++++|.++.++.  |..+++|++|++++|.++.++.  |..+++|++|++++ |
T Consensus        92 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~  171 (440)
T 3zyj_A           92 ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK  171 (440)
T ss_dssp             EEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred             EEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC
Confidence            456777777776532    7788888888888888765  7788888888888888887764  77888888888887 4


Q ss_pred             CCCcccC--CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCcc
Q psy13376        128 RIEQIQG--LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVD  205 (417)
Q Consensus       128 ~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  205 (417)
                      .++.++.  |..+++|++|++++|.++.++.+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++.++.  
T Consensus       172 ~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~--  248 (440)
T 3zyj_A          172 RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIER--  248 (440)
T ss_dssp             TCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECT--
T ss_pred             CcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeEECh--
Confidence            5666664  78888899999999998888888888899999999999888765 567888899999999998888765  


Q ss_pred             HHHHhcCCCcccccCcccC
Q psy13376        206 GFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       206 ~~~~~~l~~L~~Ld~~~~~  224 (417)
                       ..+..+++|+.|+++.+.
T Consensus       249 -~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          249 -NAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             -TSSTTCTTCCEEECTTSC
T ss_pred             -hhhcCCCCCCEEECCCCC
Confidence             345678889998888765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.72  E-value=4.4e-17  Score=165.61  Aligned_cols=200  Identities=17%  Similarity=0.243  Sum_probs=113.6

Q ss_pred             cccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhcccc-ccccccccccccCCcchhhhh-cccccEEEeecCC
Q psy13376          7 VDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGV-ISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIKT   84 (417)
Q Consensus         7 ~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~-~~~~~~~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~   84 (417)
                      +++++.++++.|.+++++.+..+.+|..+.   +..+.+..+.+ .......+.++.|++..++-. +++|++|++++|.
T Consensus        41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~---Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~  117 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMTGIEKLTGLTKLI---CTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNK  117 (457)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCSEEE---CCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSC
T ss_pred             cCCCCEEEccCCCcccChhhcccCCCCEEE---ccCCcCCeEccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCc
Confidence            467888888888888887666665555544   22222222210 001123455777777766422 7777888888887


Q ss_pred             CCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCC-CCCcccCCccccccceeEeecCCCCCcCCCCCCCCC
Q psy13376         85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYN-RIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKL  163 (417)
Q Consensus        85 i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L  163 (417)
                      ++.++ +..+++|++|++++|.++.++ ++.+++|++|++++| .+..+ ++..+++|++|++++|+++.++ +..+++|
T Consensus       118 l~~l~-~~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L  193 (457)
T 3bz5_A          118 LTKLD-VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELD-VSQNKLL  193 (457)
T ss_dssp             CSCCC-CTTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCC-CTTCTTC
T ss_pred             CCeec-CCCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccceec-cccCCCC
Confidence            77764 777777777777777777653 555555555555555 23333 3445555555555555555554 4555555


Q ss_pred             cEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCccc
Q psy13376        164 ELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHII  223 (417)
Q Consensus       164 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~  223 (417)
                      +.|++++|.++.++    +..+++|+.|++++|+++.+|      +..+++|+.|+++.+
T Consensus       194 ~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ip------~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          194 NRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID------VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC------CTTCTTCSEEECCSS
T ss_pred             CEEECcCCcCCeec----cccCCCCCEEECcCCcccccC------ccccCCCCEEEeeCC
Confidence            55555555555442    244455555555555555543      134445555544443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=2.2e-17  Score=151.35  Aligned_cols=146  Identities=22%  Similarity=0.287  Sum_probs=116.7

Q ss_pred             ccccccCCcchhhhh-cccccEEEeecCCCCCCCC---cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCC
Q psy13376         57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN---LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIE  130 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~---l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~  130 (417)
                      .+..+.|.+..++.. .+.++.|++++|.|+.++.   |..+++|++|++++|.|+.++.  |.++++|++|+|++|.++
T Consensus        15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~   94 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE   94 (220)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC
Confidence            346677777777655 6677888888888888732   7788888888888888887763  888888888888888888


Q ss_pred             cccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        131 QIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       131 ~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      .++.  |..+++|++|+|++|+|+.++  .+..+++|++|++++|.|+.+++ ..+..+++|+.|++++|++.....
T Consensus        95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCCcCCCc
Confidence            8775  788888888888888888874  47888888888888888888754 467788888888888888876554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.71  E-value=3e-17  Score=166.25  Aligned_cols=164  Identities=24%  Similarity=0.234  Sum_probs=117.1

Q ss_pred             ccccccCCcchhhhh----cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeC-C
Q psy13376         57 SLLQESTNLAEKLQI----YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGY-N  127 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l----l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~-N  127 (417)
                      .|.++.|+|..+..-    +++|+.|++++|.++.++.  |..+++|++|++++|.++.++.  |..+++|+.|++++ |
T Consensus       103 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~  182 (452)
T 3zyi_A          103 VLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK  182 (452)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred             EEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC
Confidence            345666666665422    6667777777777776654  6667777777777777776653  66677777777776 4


Q ss_pred             CCCcccC--CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCcc
Q psy13376        128 RIEQIQG--LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVD  205 (417)
Q Consensus       128 ~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  205 (417)
                      .++.++.  |..+++|++|++++|+++.++.+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++.++.  
T Consensus       183 ~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~--  259 (452)
T 3zyi_A          183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLIER--  259 (452)
T ss_dssp             TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECG-GGGTTCTTCCEEECTTSCCCEECT--
T ss_pred             CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCc-ccccCccCCCEEEeCCCcCceECH--
Confidence            5556653  67777888888888888888778888888888888888887755 467788888888888888877654  


Q ss_pred             HHHHhcCCCcccccCcccC
Q psy13376        206 GFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       206 ~~~~~~l~~L~~Ld~~~~~  224 (417)
                       ..+..+++|+.|+++.+.
T Consensus       260 -~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          260 -NAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             -TTTTTCTTCCEEECCSSC
T ss_pred             -HHhcCCCCCCEEECCCCc
Confidence             345677888888877765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=3.7e-17  Score=160.91  Aligned_cols=164  Identities=20%  Similarity=0.248  Sum_probs=139.6

Q ss_pred             ccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cC-CCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCC
Q psy13376         57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LW-MMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIE  130 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~-~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~  130 (417)
                      .+..+.+++..++.. .+.++.|++++|.|+.++.  +. .+++|+.|+|++|.|+.++.  |..+++|++|+|++|+|+
T Consensus        22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~  101 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH  101 (361)
T ss_dssp             EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC
Confidence            356777888887765 7789999999999999865  66 89999999999999998873  999999999999999999


Q ss_pred             cccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhh---hCCCCcCEEeccCCCCCCCCC
Q psy13376        131 QIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYL---RRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       131 ~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l---~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      .++.  |..+++|++|+|++|+|+.++  .|..+++|++|+|++|.|+.++. ..+   ..+++|+.|+|++|+++.++.
T Consensus       102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~  180 (361)
T 2xot_A          102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLPL  180 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCCH
T ss_pred             cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccCH
Confidence            9885  899999999999999999884  58999999999999999999876 344   578999999999999999875


Q ss_pred             ccHHHHhcCCCc--ccccCcccC
Q psy13376        204 VDGFAIAMVPQL--QCYNNHIIL  224 (417)
Q Consensus       204 ~~~~~~~~l~~L--~~Ld~~~~~  224 (417)
                         ..+..++.+  +.|++..++
T Consensus       181 ---~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          181 ---TDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             ---HHHHHSCHHHHTTEECCSSC
T ss_pred             ---HHhhhccHhhcceEEecCCC
Confidence               456677764  667766544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=1.1e-16  Score=144.92  Aligned_cols=142  Identities=21%  Similarity=0.306  Sum_probs=116.9

Q ss_pred             ccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCccc
Q psy13376         59 LQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ  133 (417)
Q Consensus        59 ~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~  133 (417)
                      ....+.+..++.. .++++.|++++|.++.++.  +..+++|++|++++|.++.++.  |..+++|++|++++|.++.++
T Consensus        13 ~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   92 (208)
T 2o6s_A           13 ECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP   92 (208)
T ss_dssp             ECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             EecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence            4555566666554 7788999999999988865  7788999999999999988864  788899999999999998887


Q ss_pred             C--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376        134 G--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       134 ~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~  201 (417)
                      .  +..+++|++|++++|.|+.++.  +..+++|++|++++|.++.++. ..+..+++|+.|++++|++...
T Consensus        93 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A           93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCCC
T ss_pred             HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeecC
Confidence            5  7888899999999999988863  7888999999999999988776 4567888999999999987653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.71  E-value=2.2e-17  Score=166.72  Aligned_cols=108  Identities=25%  Similarity=0.328  Sum_probs=59.6

Q ss_pred             CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCc
Q psy13376        113 LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHL  188 (417)
Q Consensus       113 l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L  188 (417)
                      +..+++|++|++++|.++.++.  |..+++|++|++++|.++.++  .+..+++|++|++++|.++.+++ ..+..+++|
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L  373 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPNL  373 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT-TTTTTCTTC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh-hhccccccc
Confidence            4455555555555555554432  555555666666666555542  34555666666666666655533 344556666


Q ss_pred             CEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        189 GRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       189 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      ++|++++|+++.++.   ..+..+++|+.|+++.+.
T Consensus       374 ~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          374 KELALDTNQLKSVPD---GIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSC
T ss_pred             cEEECCCCccccCCH---hHhccCCcccEEEccCCC
Confidence            666666666665554   233455666666655443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.70  E-value=9.1e-17  Score=163.13  Aligned_cols=137  Identities=19%  Similarity=0.253  Sum_probs=73.4

Q ss_pred             ccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC
Q psy13376         57 SLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG  134 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~  134 (417)
                      .+.++.|++..++.+  +++|++|++++|.++.++..  .++|++|++++|.++.++.++.+++|++|++++|.++.+|.
T Consensus       135 ~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~  212 (454)
T 1jl5_A          135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD  212 (454)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC
T ss_pred             EEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCC
Confidence            334455555544433  55555555555555554432  13555555555555555555555555555555555555544


Q ss_pred             CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCC
Q psy13376        135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKE  202 (417)
Q Consensus       135 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~  202 (417)
                      +.  ++|++|++++|.++.+|.+..+++|++|++++|+++.++.     .+++|+.|++++|.++.++
T Consensus       213 ~~--~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l~  273 (454)
T 1jl5_A          213 LP--LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLP  273 (454)
T ss_dssp             CC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCC
T ss_pred             Cc--CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccccC
Confidence            22  3556666666666655556666666666666666665543     1245555555555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.70  E-value=3.6e-17  Score=162.22  Aligned_cols=206  Identities=17%  Similarity=0.203  Sum_probs=113.9

Q ss_pred             cccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhcccc--c--cccccccccccCCcchhhh--h--ccccc
Q psy13376          7 VDRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGV--I--SENLLSLLQESTNLAEKLQ--I--YKLIK   76 (417)
Q Consensus         7 ~~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~--~--~~~~~~l~~~~n~i~~l~~--l--l~~L~   76 (417)
                      +++++.+++..|.++.+.+  +.++.+|..+.   +..+.+..++.  .  ......+.++.|++..+..  +  +++|+
T Consensus        92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~---L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  168 (390)
T 3o6n_A           92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV---LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  168 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE---CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred             CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE---CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence            4566777777777766643  34444443333   11111111100  0  0111234566666665543  2  56667


Q ss_pred             EEEeecCCCCCCCCcCCC----------------------------------------cccceEeeeCCCCCCcCCCCCC
Q psy13376         77 AVNLRIKTLRKIENLWMM----------------------------------------ENLVELDLSMNHIGVIENLDQL  116 (417)
Q Consensus        77 ~L~Ls~N~i~~i~~l~~l----------------------------------------~~L~~L~Ls~N~l~~l~~l~~l  116 (417)
                      .|++++|.++.++ +..+                                        ++|+.|++++|.++..+.+..+
T Consensus       169 ~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l  247 (390)
T 3o6n_A          169 NLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY  247 (390)
T ss_dssp             EEECCSSCCSBCC-GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC
T ss_pred             EEECCCCcCCccc-cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCC
Confidence            7777766666542 1222                                        2455555555555555455566


Q ss_pred             ccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEec
Q psy13376        117 VCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI  193 (417)
Q Consensus       117 ~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L  193 (417)
                      ++|++|++++|.++.++.  +..+++|++|++++|+++.++ .+..+++|++|++++|.++.++.  .+..+++|+.|++
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~l~~L~~L~L  325 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER--NQPQFDRLENLYL  325 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGG--GHHHHTTCSEEEC
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCc--cccccCcCCEEEC
Confidence            666666666666665532  666666666666666666664 24456666666666666666554  3455666667777


Q ss_pred             cCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        194 ERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       194 ~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      ++|+++.++.      ..+++|+.|+++.+.
T Consensus       326 ~~N~i~~~~~------~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          326 DHNSIVTLKL------STHHTLKNLTLSHND  350 (390)
T ss_dssp             CSSCCCCCCC------CTTCCCSEEECCSSC
T ss_pred             CCCccceeCc------hhhccCCEEEcCCCC
Confidence            7776666542      456666666666655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.69  E-value=6.5e-17  Score=156.75  Aligned_cols=213  Identities=16%  Similarity=0.198  Sum_probs=157.9

Q ss_pred             ccccceeeccccccCCCCc--hhhhHHHHHhcCCCCCChhhhhccc-cccccccccccccCCcchhhhh----cccccEE
Q psy13376          6 TVDRIKKIGLIKDRAGDES--TLKNLAQVLQNAPAIINEDLLSKKG-VISENLLSLLQESTNLAEKLQI----YKLIKAV   78 (417)
Q Consensus         6 ~~~~l~~l~l~~n~l~dl~--~L~~l~~L~~~~~~~~~~~~l~~~~-~~~~~~~~l~~~~n~i~~l~~l----l~~L~~L   78 (417)
                      .+++++.+++..|.++.+.  .+.++.+|..+.   +..+.+..++ ........+.++.|++..+...    +++|+.|
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~---Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  150 (330)
T 1xku_A           74 NLKNLHTLILINNKISKISPGAFAPLVKLERLY---LSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV  150 (330)
T ss_dssp             TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE---CCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred             cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE---CCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEE
Confidence            4578899999999999873  355555555554   3333333221 0112334567888888877653    8899999


Q ss_pred             EeecCCCCC--C--CCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCC
Q psy13376         79 NLRIKTLRK--I--ENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIE  152 (417)
Q Consensus        79 ~Ls~N~i~~--i--~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~  152 (417)
                      ++++|.++.  +  ..+..+++|++|++++|.++.++... .++|++|++++|.++.++.  +..+++|++|++++|.++
T Consensus       151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  229 (330)
T 1xku_A          151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  229 (330)
T ss_dssp             ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence            999999974  2  23888999999999999999887521 2789999999999998753  888999999999999998


Q ss_pred             CcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHH---HhcCCCcccccCcccC
Q psy13376        153 TIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFA---IAMVPQLQCYNNHIIL  224 (417)
Q Consensus       153 ~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~---~~~l~~L~~Ld~~~~~  224 (417)
                      .++  .+..+++|++|++++|.++.++.  .+..+++|+.|++++|+++.++......   ....+.++.+++..++
T Consensus       230 ~~~~~~~~~l~~L~~L~L~~N~l~~lp~--~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          230 AVDNGSLANTPHLRELHLNNNKLVKVPG--GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             EECTTTGGGSTTCCEEECCSSCCSSCCT--TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             eeChhhccCCCCCCEEECCCCcCccCCh--hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence            875  48889999999999999998875  4678899999999999999877521100   0124667777776655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.69  E-value=2.5e-17  Score=157.90  Aligned_cols=166  Identities=17%  Similarity=0.233  Sum_probs=137.9

Q ss_pred             cccccccCCcchhh----hh--cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcC---CCCCCccCceeeee
Q psy13376         56 LSLLQESTNLAEKL----QI--YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIE---NLDQLVCLEKLDLG  125 (417)
Q Consensus        56 ~~l~~~~n~i~~l~----~l--l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls  125 (417)
                      ..+.++.|++..+.    ..  +++|++|++++|.++.++. +..+++|++|++++|.++.++   .+..+++|++|+++
T Consensus        55 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  134 (306)
T 2z66_A           55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS  134 (306)
T ss_dssp             SEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT
T ss_pred             CEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC
Confidence            34567888887552    22  7889999999999988865 888999999999999998775   38889999999999


Q ss_pred             CCCCCcccC--CccccccceeEeecCCCCC--cC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCC
Q psy13376        126 YNRIEQIQG--LDTLVNLKVLNLKMNRIET--IE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCD  200 (417)
Q Consensus       126 ~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~  200 (417)
                      +|.++.+..  +..+++|++|++++|.++.  ++ .+..+++|++|++++|.++.++. ..+..+++|+.|++++|.++.
T Consensus       135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSB
T ss_pred             CCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCc
Confidence            999986653  8889999999999999986  44 58889999999999999998755 467889999999999999998


Q ss_pred             CCCccHHHHhcCCCcccccCcccCH
Q psy13376        201 KENVDGFAIAMVPQLQCYNNHIILE  225 (417)
Q Consensus       201 ~~~~~~~~~~~l~~L~~Ld~~~~~~  225 (417)
                      .+.   ..+..+++|+.|+++.+..
T Consensus       214 ~~~---~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          214 LDT---FPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             CCS---GGGTTCTTCCEEECTTSCC
T ss_pred             cCh---hhccCcccCCEeECCCCCC
Confidence            876   3467789999999887763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1.9e-18  Score=180.22  Aligned_cols=201  Identities=23%  Similarity=0.347  Sum_probs=151.7

Q ss_pred             ccccceeeccccccCCCCch-hhhHHHHHhcCCCCCChhh-hhccccccccccccccccCCcchhhhh---cccccEEE-
Q psy13376          6 TVDRIKKIGLIKDRAGDEST-LKNLAQVLQNAPAIINEDL-LSKKGVISENLLSLLQESTNLAEKLQI---YKLIKAVN-   79 (417)
Q Consensus         6 ~~~~l~~l~l~~n~l~dl~~-L~~l~~L~~~~~~~~~~~~-l~~~~~~~~~~~~l~~~~n~i~~l~~l---l~~L~~L~-   79 (417)
                      +.++++.++++.|+++.++. +.+|.+|..+.+   +.+. +..+....       ...+.....+..   +++|+.|+ 
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l---~~n~~l~~l~~ll-------~~~~~~~~~~~~l~~l~~L~~L~~  416 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLM-------RALDPLLYEKETLQYFSTLKAVDP  416 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH-------HHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHHhcc---ccchhhhhHHHHH-------HhcccccCCHHHHHHHHhcccCcc
Confidence            45678889999999988774 777888888773   2221 11110000       000111111111   44444444 


Q ss_pred             -------------eecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC-CccccccceeE
Q psy13376         80 -------------LRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLN  145 (417)
Q Consensus        80 -------------Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~  145 (417)
                                   +++|.++.++.    ..|+.|++++|.++.+|.++.+++|+.|+|++|.|+.+|. ++.+++|+.|+
T Consensus       417 l~~n~~~~L~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  492 (567)
T 1dce_A          417 MRAAYLDDLRSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ  492 (567)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEE
T ss_pred             hhhcccchhhhhhhhcccccccCc----cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEE
Confidence                         44444444322    2589999999999999999999999999999999999986 99999999999


Q ss_pred             eecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccC
Q psy13376        146 LKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNN  220 (417)
Q Consensus       146 Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~  220 (417)
                      |++|.|+.+|.+..+++|++|++++|.|+.+.....+..+++|+.|++++|+++..+++.......+|+|+.||+
T Consensus       493 Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          493 ASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999999999999999999999999999841246789999999999999999998877778888999999863

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.69  E-value=1.3e-16  Score=162.03  Aligned_cols=141  Identities=21%  Similarity=0.268  Sum_probs=112.8

Q ss_pred             cccccccCCcchhhhhcccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCC
Q psy13376         56 LSLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL  135 (417)
Q Consensus        56 ~~l~~~~n~i~~l~~ll~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~  135 (417)
                      ..+.++.|++..+....++|++|++++|.++.++.++.+++|++|++++|+++.+|..  .++|++|++++|.++.+|.+
T Consensus       114 ~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~  191 (454)
T 1jl5_A          114 KSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPEL  191 (454)
T ss_dssp             CEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC
T ss_pred             cEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccc
Confidence            3455677777766555678888888888888887788888888888888888877653  35888888888888888888


Q ss_pred             ccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        136 DTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       136 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      ..+++|++|++++|.++.++.+  .++|++|++++|.++.++.   +..+++|+.|++++|.++.++.
T Consensus       192 ~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~l~~N~l~~l~~  254 (454)
T 1jl5_A          192 QNLPFLTAIYADNNSLKKLPDL--PLSLESIVAGNNILEELPE---LQNLPFLTTIYADNNLLKTLPD  254 (454)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSSCCS
T ss_pred             cCCCCCCEEECCCCcCCcCCCC--cCcccEEECcCCcCCcccc---cCCCCCCCEEECCCCcCCcccc
Confidence            8888888888888888887653  2588899999998887764   5788999999999999988765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.69  E-value=1.6e-16  Score=145.57  Aligned_cols=143  Identities=24%  Similarity=0.289  Sum_probs=127.7

Q ss_pred             cEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCC
Q psy13376         76 KAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR  150 (417)
Q Consensus        76 ~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~  150 (417)
                      +.+++++++++.+|. +.  ++++.|++++|.|+.++  .|..+++|++|+|++|.|+.+..  |..+++|++|+|++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            678999999999986 43  78999999999999887  48999999999999999998853  9999999999999999


Q ss_pred             CCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       151 i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      |+.++.  |..+++|++|++++|.|+.++. ..+..+++|+.|+|++|.++.++.   ..+..+++|+.|+++.+.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAK---GTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSC
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECH---HHHhCCCCCCEEEeCCCC
Confidence            999974  7899999999999999999876 578899999999999999999876   346778999999988765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=3.3e-17  Score=171.90  Aligned_cols=74  Identities=20%  Similarity=0.267  Sum_probs=40.6

Q ss_pred             cccccCCcchhhhh----cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCC
Q psy13376         58 LLQESTNLAEKLQI----YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRI  129 (417)
Q Consensus        58 l~~~~n~i~~l~~l----l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l  129 (417)
                      |.+++|.+..+..-    +++|+.|++++|.++.++.  |..+++|++|++++|.++.+++  +.++++|++|++++|.+
T Consensus       104 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  183 (597)
T 3oja_B          104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL  183 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence            34555555554431    5556666666666665544  4555666666666666555432  55555555555555555


Q ss_pred             Cc
Q psy13376        130 EQ  131 (417)
Q Consensus       130 ~~  131 (417)
                      +.
T Consensus       184 ~~  185 (597)
T 3oja_B          184 TH  185 (597)
T ss_dssp             SB
T ss_pred             CC
Confidence            43

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=3.3e-17  Score=171.89  Aligned_cols=207  Identities=15%  Similarity=0.185  Sum_probs=113.7

Q ss_pred             cccceeeccccccCCCCc--hhhhHHHHHhcCCCCCChhhhhcccc----ccccccccccccCCcchhhhh----ccccc
Q psy13376          7 VDRIKKIGLIKDRAGDES--TLKNLAQVLQNAPAIINEDLLSKKGV----ISENLLSLLQESTNLAEKLQI----YKLIK   76 (417)
Q Consensus         7 ~~~l~~l~l~~n~l~dl~--~L~~l~~L~~~~~~~~~~~~l~~~~~----~~~~~~~l~~~~n~i~~l~~l----l~~L~   76 (417)
                      +++++.+++..|.++++.  .+..+.+|..+.   +..+.+..+..    .......|.+++|.+..++.-    +++|+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~---L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY---MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEE---CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEE---CCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            456777777777777654  244444444333   11111111100    001123455777777766542    67777


Q ss_pred             EEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcC-------------------------------------------
Q psy13376         77 AVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIE-------------------------------------------  111 (417)
Q Consensus        77 ~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~-------------------------------------------  111 (417)
                      .|++++|.++.+++  +..+++|++|++++|.++.++                                           
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~  230 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV  230 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc
Confidence            77777777777653  667777777777777666432                                           


Q ss_pred             ------------------CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC-CCCCCCCCcEEeccC
Q psy13376        112 ------------------NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFNIAA  170 (417)
Q Consensus       112 ------------------~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~  170 (417)
                                        .+..+++|+.|++++|.++.+++  |..+++|+.|+|++|.++.++ .+..+++|++|++++
T Consensus       231 ~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~  310 (597)
T 3oja_B          231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH  310 (597)
T ss_dssp             CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCS
T ss_pred             CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCC
Confidence                              13334455555555555554422  455555555555555555554 233455566666666


Q ss_pred             CccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        171 NRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       171 N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      |.++.++.  .+..+++|+.|++++|+++.++.      ..+++|+.|+++.++
T Consensus       311 N~l~~i~~--~~~~l~~L~~L~L~~N~l~~~~~------~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          311 NHLLHVER--NQPQFDRLENLYLDHNSIVTLKL------STHHTLKNLTLSHND  356 (597)
T ss_dssp             SCCCCCGG--GHHHHTTCSEEECCSSCCCCCCC------CTTCCCSEEECCSSC
T ss_pred             CCCCccCc--ccccCCCCCEEECCCCCCCCcCh------hhcCCCCEEEeeCCC
Confidence            65555543  23455566666666666655542      456677777766655

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.68  E-value=1.8e-16  Score=161.13  Aligned_cols=186  Identities=19%  Similarity=0.263  Sum_probs=146.0

Q ss_pred             ccccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhcccc-ccccccccccccCCcchhhhh-cccccEEEeecC
Q psy13376          6 TVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGV-ISENLLSLLQESTNLAEKLQI-YKLIKAVNLRIK   83 (417)
Q Consensus         6 ~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~-~~~~~~~l~~~~n~i~~l~~l-l~~L~~L~Ls~N   83 (417)
                      .+++++.++++.|.++.++ +..+.+|..+.   +..+.+....+ .......+.++.|++..++-. +++|+.|++++|
T Consensus        62 ~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~---Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITTLD-LSQNTNLTYLA---CDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARN  137 (457)
T ss_dssp             GCTTCSEEECCSSCCSCCC-CTTCTTCSEEE---CCSSCCSCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTS
T ss_pred             ccCCCCEEEccCCcCCeEc-cccCCCCCEEE---CcCCCCceeecCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCC
Confidence            3578889999999999874 66655555544   22222222210 011223567888999887522 899999999999


Q ss_pred             CCCCCCCcCCCcccceEeeeCC-CCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCC
Q psy13376         84 TLRKIENLWMMENLVELDLSMN-HIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEK  162 (417)
Q Consensus        84 ~i~~i~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~  162 (417)
                      .++.++ +..+++|++|++++| .++.+ .+..+++|++|++++|+++.++ +..+++|+.|++++|.++.++ +..+++
T Consensus       138 ~l~~l~-l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~-l~~l~~  213 (457)
T 3bz5_A          138 TLTEID-VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD-LNQNIQ  213 (457)
T ss_dssp             CCSCCC-CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCC-CTTCTT
T ss_pred             ccceec-cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeec-cccCCC
Confidence            999984 888999999999999 55555 5788999999999999999987 888899999999999999884 888999


Q ss_pred             CcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        163 LELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       163 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      |++|++++|+++.+|    +..+++|+.|++++|+++..+.
T Consensus       214 L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          214 LTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             CSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCCC
T ss_pred             CCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcCH
Confidence            999999999999875    4788999999999999988764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.68  E-value=3.8e-19  Score=160.17  Aligned_cols=157  Identities=24%  Similarity=0.341  Sum_probs=133.2

Q ss_pred             ccEEEeecC--CCCCCCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC-CccccccceeEeecCC
Q psy13376         75 IKAVNLRIK--TLRKIEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNR  150 (417)
Q Consensus        75 L~~L~Ls~N--~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~  150 (417)
                      ++...+.+.  .++.++. +..+++|++|++++|.++.++.+..+++|++|++++|.++.+|. +..+++|++|++++|+
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~  104 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence            444444443  4455543 78899999999999999999888899999999999999999987 6677999999999999


Q ss_pred             CCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC-------CCccHHHHhcCCCcccccCccc
Q psy13376        151 IETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK-------ENVDGFAIAMVPQLQCYNNHII  223 (417)
Q Consensus       151 i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~-------~~~~~~~~~~l~~L~~Ld~~~~  223 (417)
                      ++.++.+..+++|++|++++|.++.++.+..+..+++|++|++++|++++.       ..|....+..+++|+.||...+
T Consensus       105 l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i  184 (198)
T 1ds9_A          105 IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPV  184 (198)
T ss_dssp             CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGG
T ss_pred             CCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCccc
Confidence            999988888999999999999999987766788999999999999999765       3455567889999999999999


Q ss_pred             CHHHHHHH
Q psy13376        224 LEDERRTA  231 (417)
Q Consensus       224 ~~~~~~~~  231 (417)
                      ...++..+
T Consensus       185 ~~~e~~~a  192 (198)
T 1ds9_A          185 DVDEREQA  192 (198)
T ss_dssp             TTTTTTHH
T ss_pred             CHHHHHHH
Confidence            88777666

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.68  E-value=4.2e-17  Score=157.19  Aligned_cols=159  Identities=18%  Similarity=0.124  Sum_probs=125.7

Q ss_pred             ccccccCCcchhhhh---c-----ccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCc---C-C--CCCCccCc
Q psy13376         57 SLLQESTNLAEKLQI---Y-----KLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVI---E-N--LDQLVCLE  120 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l---l-----~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l---~-~--l~~l~~L~  120 (417)
                      .+.++.|++..++..   +     ++|++|++++|.++.++.  +..+++|++|++++|++...   + .  +..+++|+
T Consensus       125 ~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~  204 (312)
T 1wwl_A          125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ  204 (312)
T ss_dssp             EEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCC
T ss_pred             EEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCC
Confidence            456777888765322   3     889999999999998863  88899999999999987642   2 2  37889999


Q ss_pred             eeeeeCCCCCcccC-----CccccccceeEeecCCCCCcC---CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEe
Q psy13376        121 KLDLGYNRIEQIQG-----LDTLVNLKVLNLKMNRIETIE---GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLN  192 (417)
Q Consensus       121 ~L~Ls~N~l~~l~~-----~~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~  192 (417)
                      +|++++|+++.++.     +..+++|++|++++|.++..+   .+..+++|++|++++|.|+.+|.  .+.  ++|+.|+
T Consensus       205 ~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~--~~L~~L~  280 (312)
T 1wwl_A          205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--GLP--AKLSVLD  280 (312)
T ss_dssp             EEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS--SCC--SEEEEEE
T ss_pred             EEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh--hcc--CCceEEE
Confidence            99999999986542     456789999999999998753   46678899999999999998776  222  7899999


Q ss_pred             ccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        193 IERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       193 L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      +++|++++.|.     +..+++|+.|+++.+.
T Consensus       281 Ls~N~l~~~p~-----~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          281 LSYNRLDRNPS-----PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCSSCCCSCCC-----TTTSCEEEEEECTTCT
T ss_pred             CCCCCCCCChh-----HhhCCCCCEEeccCCC
Confidence            99999998864     5678899999887764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.68  E-value=7.9e-17  Score=156.39  Aligned_cols=166  Identities=18%  Similarity=0.153  Sum_probs=120.7

Q ss_pred             ccccccccCCcchhhh--h--cccccEEEeecCCCCC--C-C-CcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeC
Q psy13376         55 LLSLLQESTNLAEKLQ--I--YKLIKAVNLRIKTLRK--I-E-NLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGY  126 (417)
Q Consensus        55 ~~~l~~~~n~i~~l~~--l--l~~L~~L~Ls~N~i~~--i-~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~  126 (417)
                      ...+.++.|++..+..  +  +++|+.|++++|.++.  + + .+..+ +|++|++++|.++.+|.- -.++|++|++++
T Consensus       125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~  202 (332)
T 2ft3_A          125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD-LPETLNELHLDH  202 (332)
T ss_dssp             CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-SCSSCSCCBCCS
T ss_pred             CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc-ccCCCCEEECCC
Confidence            3456788888888765  3  8899999999999974  2 2 26666 888888888888887641 126788888888


Q ss_pred             CCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCC
Q psy13376        127 NRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKE  202 (417)
Q Consensus       127 N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~  202 (417)
                      |.++.++.  +..+++|++|++++|.++.++  .+..+++|++|++++|+++.+|.  .+..+++|+.|++++|+++.++
T Consensus       203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~--~l~~l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA--GLPDLKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT--TGGGCTTCCEEECCSSCCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh--hhhcCccCCEEECCCCCCCccC
Confidence            88887763  778888888888888888775  37778888888888888887765  4677888888888888888766


Q ss_pred             CccHHH---HhcCCCcccccCcccC
Q psy13376        203 NVDGFA---IAMVPQLQCYNNHIIL  224 (417)
Q Consensus       203 ~~~~~~---~~~l~~L~~Ld~~~~~  224 (417)
                      ......   ....+.|+.+++..++
T Consensus       281 ~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          281 VNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             TTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             hhHccccccccccccccceEeecCc
Confidence            411100   0114566777766554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=1.3e-16  Score=139.34  Aligned_cols=132  Identities=25%  Similarity=0.239  Sum_probs=103.3

Q ss_pred             cccccEEEeecCCCC--CCCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCc-ccC-CccccccceeEe
Q psy13376         72 YKLIKAVNLRIKTLR--KIEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQ-IQG-LDTLVNLKVLNL  146 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~--~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l~~-~~~l~~L~~L~L  146 (417)
                      .++++.|++++|.++  .++. +..+++|++|++++|.++.++.+..+++|++|++++|.++. ++. +..+++|++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            577888888888887  6666 57888888888888888877668888888888888888887 554 555888888888


Q ss_pred             ecCCCCCcC---CCCCCCCCcEEeccCCccCcchhh--hhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        147 KMNRIETIE---GLDHLEKLELFNIAANRIQSLASL--VYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       147 s~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      ++|.|+.++   .+..+++|++|++++|.++.++..  ..+..+++|+.|++++|.+...+.
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            888888764   467788888888888888876641  256778888888888888777664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=1.7e-16  Score=138.69  Aligned_cols=134  Identities=23%  Similarity=0.284  Sum_probs=120.3

Q ss_pred             CCcccceEeeeCCCCC--CcCC-CCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCC-cCC-CCCCCCCcEEe
Q psy13376         93 MMENLVELDLSMNHIG--VIEN-LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET-IEG-LDHLEKLELFN  167 (417)
Q Consensus        93 ~l~~L~~L~Ls~N~l~--~l~~-l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~-l~~-l~~l~~L~~L~  167 (417)
                      ..++|+.|++++|.++  .++. +..+++|++|++++|.++.++.+..+++|++|++++|.++. ++. +..+++|++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            4578999999999999  7876 68999999999999999998779999999999999999998 554 45699999999


Q ss_pred             ccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHH
Q psy13376        168 IAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILED  226 (417)
Q Consensus       168 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~  226 (417)
                      +++|.+++++.+..+..+++|++|++++|+++..+.|+...+..+++|+.|+++.+...
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            99999999876567899999999999999999999877778899999999999888643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=4.3e-16  Score=143.53  Aligned_cols=144  Identities=24%  Similarity=0.302  Sum_probs=127.7

Q ss_pred             ccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCC
Q psy13376         75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR  150 (417)
Q Consensus        75 L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~  150 (417)
                      -+.++.+++.++.+|. .-.++|++|++++|.++.++.  |..+++|++|+|++|+|+.++.  |..+++|++|+|++|+
T Consensus        21 ~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            5679999999999986 123899999999999998853  8999999999999999999985  8899999999999999


Q ss_pred             CCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       151 i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      |+.++.  +..+++|++|++++|+|+.++.  .+..+++|+.|++++|.++.++.   ..+..+++|+.|++..+.
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLTELPR--GIERLTHLTHLALDQNQLKSIPH---GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECTTSC
T ss_pred             CCccChhHhCcchhhCeEeccCCcccccCc--ccccCCCCCEEECCCCcCCccCH---HHHhCCCCCCEEEeeCCC
Confidence            999974  7899999999999999999875  56899999999999999999876   356788999999987765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.67  E-value=1.3e-16  Score=166.85  Aligned_cols=144  Identities=25%  Similarity=0.293  Sum_probs=122.2

Q ss_pred             cccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC
Q psy13376         60 QESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG  134 (417)
Q Consensus        60 ~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~  134 (417)
                      ....+++.++.- .+++++|+|++|.|+.+++  |.++++|++|+|++|+|+.+++  |.++++|++|+|++|+|+.++.
T Consensus        38 c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           38 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             CTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred             CCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence            344456666544 5689999999999999864  8999999999999999998864  8999999999999999998885


Q ss_pred             --CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        135 --LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       135 --~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                        |.++++|++|+|++|+++.++  .|+++++|++|++++|.++.++....+..+++|++|++++|+++.++.
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence              889999999999999999986  488999999999999999876544567889999999999999988765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.67  E-value=1.2e-16  Score=153.76  Aligned_cols=160  Identities=16%  Similarity=0.128  Sum_probs=128.0

Q ss_pred             cccccccCCcchh----hhh----cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCC---cC---CCCCCccC
Q psy13376         56 LSLLQESTNLAEK----LQI----YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGV---IE---NLDQLVCL  119 (417)
Q Consensus        56 ~~l~~~~n~i~~l----~~l----l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~---l~---~l~~l~~L  119 (417)
                      ..+.++.|++...    ...    +++|++|++++|.++.++.  +..+++|++|++++|++..   ++   .+..+++|
T Consensus       120 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L  199 (310)
T 4glp_A          120 SSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI  199 (310)
T ss_dssp             SSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC
T ss_pred             CEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC
Confidence            3456777887752    222    8899999999999988864  8899999999999999764   32   24788999


Q ss_pred             ceeeeeCCCCCcccC-----CccccccceeEeecCCCCCc-C-CCCCC---CCCcEEeccCCccCcchhhhhhhCCCCcC
Q psy13376        120 EKLDLGYNRIEQIQG-----LDTLVNLKVLNLKMNRIETI-E-GLDHL---EKLELFNIAANRIQSLASLVYLRRFKHLG  189 (417)
Q Consensus       120 ~~L~Ls~N~l~~l~~-----~~~l~~L~~L~Ls~N~i~~l-~-~l~~l---~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~  189 (417)
                      ++|++++|+++.++.     +..+++|++|+|++|.++.+ | .+..+   ++|++|++++|+|+.+|.  .+  .++|+
T Consensus       200 ~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~--~~~L~  275 (310)
T 4glp_A          200 QNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK--GL--PAKLR  275 (310)
T ss_dssp             CSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS--CC--CSCCS
T ss_pred             CEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh--hh--cCCCC
Confidence            999999999987764     46778999999999999987 3 35444   799999999999998876  22  37999


Q ss_pred             EEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        190 RLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       190 ~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      .|++++|+++.++.     +..+++|+.|+++.+.
T Consensus       276 ~L~Ls~N~l~~~~~-----~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          276 VLDLSSNRLNRAPQ-----PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CEECCSCCCCSCCC-----TTSCCCCSCEECSSTT
T ss_pred             EEECCCCcCCCCch-----hhhCCCccEEECcCCC
Confidence            99999999998764     3678999999887764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.67  E-value=2.9e-16  Score=148.32  Aligned_cols=160  Identities=24%  Similarity=0.295  Sum_probs=106.3

Q ss_pred             Ccchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--Cc
Q psy13376         64 NLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LD  136 (417)
Q Consensus        64 ~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~  136 (417)
                      ++..++.- .+++++|++++|.++.++.  +..+++|++|++++|.++.++.  +..+++|++|++++|.++.++.  +.
T Consensus        18 ~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (276)
T 2z62_A           18 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS   97 (276)
T ss_dssp             CCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             CccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence            34444433 4567777777777777653  6777777777777777776653  7777777777777777776663  77


Q ss_pred             cccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCC
Q psy13376        137 TLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQ  214 (417)
Q Consensus       137 ~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~  214 (417)
                      .+++|++|++++|.++.++  .+..+++|++|++++|.++.++-...+..+++|++|++++|.++.++......+..++.
T Consensus        98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  177 (276)
T 2z62_A           98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL  177 (276)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred             CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence            7777777777777777765  36777777777777777776431135677777777777777777765422223333333


Q ss_pred             cc-cccCccc
Q psy13376        215 LQ-CYNNHII  223 (417)
Q Consensus       215 L~-~Ld~~~~  223 (417)
                      +. .|+++.+
T Consensus       178 l~l~L~ls~n  187 (276)
T 2z62_A          178 LNLSLDLSLN  187 (276)
T ss_dssp             CCEEEECCSS
T ss_pred             cceeeecCCC
Confidence            33 4555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.67  E-value=1e-16  Score=137.17  Aligned_cols=128  Identities=23%  Similarity=0.317  Sum_probs=89.2

Q ss_pred             CcccceEeeeCCCCC--CcCC-CCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCC-cCC-CCCCCCCcEEec
Q psy13376         94 MENLVELDLSMNHIG--VIEN-LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET-IEG-LDHLEKLELFNI  168 (417)
Q Consensus        94 l~~L~~L~Ls~N~l~--~l~~-l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~-l~~-l~~l~~L~~L~L  168 (417)
                      .++|+.|++++|.++  .++. +..+++|++|++++|.++.++.+..+++|++|++++|.++. ++. +..+++|++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            355666666666666  4543 56666777777777777666556677777777777777776 443 345777788888


Q ss_pred             cCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376        169 AANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH  221 (417)
Q Consensus       169 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~  221 (417)
                      ++|.+++++....+..+++|++|++++|+++..+.|+...+..+++|+.||++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            88877776544566778888888888888887777665677778888888765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=3.2e-16  Score=143.53  Aligned_cols=144  Identities=22%  Similarity=0.288  Sum_probs=126.8

Q ss_pred             cEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC---CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCC
Q psy13376         76 KAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN---LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR  150 (417)
Q Consensus        76 ~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~---l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~  150 (417)
                      +.+++++|.++.+|. .-.+.+++|++++|.++.++.   |..+++|++|++++|.|+.++.  |..+++|++|+|++|.
T Consensus        14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            589999999999976 113467899999999998842   8899999999999999999885  9999999999999999


Q ss_pred             CCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       151 i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      |+.++.  +..+++|++|++++|.|+.+++ ..+..+++|+.|++++|.++.+++   ..+..+++|+.|+++.+.
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAP---GAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCT---TTTTTCTTCCEEECCSCC
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECH---HHhcCCCCCCEEEecCcC
Confidence            999863  8999999999999999999865 467899999999999999999854   356789999999988765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.67  E-value=3.8e-16  Score=162.54  Aligned_cols=153  Identities=16%  Similarity=0.151  Sum_probs=123.3

Q ss_pred             ccccccCCcchhhhhcccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCc
Q psy13376         57 SLLQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLD  136 (417)
Q Consensus        57 ~l~~~~n~i~~l~~ll~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~  136 (417)
                      .|.++.|+|..++..+++|+.|++++|.|+.++.+..  +|++|++++|.++.+|.  .+++|+.|++++|.|+.+|.  
T Consensus        84 ~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--  157 (571)
T 3cvr_A           84 VLEITQNALISLPELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE--  157 (571)
T ss_dssp             EEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--
T ss_pred             EEECcCCCCcccccccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC--
Confidence            4467778888777448899999999999998877444  89999999999998887  68899999999999988887  


Q ss_pred             cccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCc-------CEEeccCCCCCCCCCccHHHH
Q psy13376        137 TLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL-------GRLNIERNPVCDKENVDGFAI  209 (417)
Q Consensus       137 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L-------~~L~L~~N~l~~~~~~~~~~~  209 (417)
                      .+++|++|+|++|.|+.+|.+.  ++|++|++++|.|+.+|.   +..  +|       +.|++++|.|+.+|.    .+
T Consensus       158 ~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~----~l  226 (571)
T 3cvr_A          158 LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA---VPV--RNHHSEETEIFFRCRENRITHIPE----NI  226 (571)
T ss_dssp             CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCC---CC----------CCEEEECCSSCCCCCCG----GG
T ss_pred             cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhh---HHH--hhhcccccceEEecCCCcceecCH----HH
Confidence            5678999999999999888754  889999999999988776   222  56       899999999998876    34


Q ss_pred             hcCCCcccccCcccCHH
Q psy13376        210 AMVPQLQCYNNHIILED  226 (417)
Q Consensus       210 ~~l~~L~~Ld~~~~~~~  226 (417)
                      ..+++|+.|+++.+...
T Consensus       227 ~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          227 LSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             GGSCTTEEEECCSSSCC
T ss_pred             hcCCCCCEEEeeCCcCC
Confidence            55889999988887643

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.67  E-value=1.4e-16  Score=168.35  Aligned_cols=207  Identities=17%  Similarity=0.187  Sum_probs=131.1

Q ss_pred             ccceeeccccccCCCCch---hhhHHHHHhcCCCCCChhhhh-ccc--cccccccccccccCCcchhhhh---ccc-ccE
Q psy13376          8 DRIKKIGLIKDRAGDEST---LKNLAQVLQNAPAIINEDLLS-KKG--VISENLLSLLQESTNLAEKLQI---YKL-IKA   77 (417)
Q Consensus         8 ~~l~~l~l~~n~l~dl~~---L~~l~~L~~~~~~~~~~~~l~-~~~--~~~~~~~~l~~~~n~i~~l~~l---l~~-L~~   77 (417)
                      ++++.+++..|.++.++.   +.++.+|..+.   +..+.+. .++  ........+.++.|++..++..   +++ |+.
T Consensus       305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~---L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~  381 (636)
T 4eco_A          305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE---CLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN  381 (636)
T ss_dssp             GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEE---CCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCE
T ss_pred             CCCCEEECCCCcCCccCchhhhccCCCCCEEe---CcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcE
Confidence            556666666666665554   44443343333   2222222 110  0001122445666666655443   666 777


Q ss_pred             EEeecCCCCCCCC-cCC--CcccceEeeeCCCCCCc-C-CCC-------CCccCceeeeeCCCCCcccC--Cccccccce
Q psy13376         78 VNLRIKTLRKIEN-LWM--MENLVELDLSMNHIGVI-E-NLD-------QLVCLEKLDLGYNRIEQIQG--LDTLVNLKV  143 (417)
Q Consensus        78 L~Ls~N~i~~i~~-l~~--l~~L~~L~Ls~N~l~~l-~-~l~-------~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~  143 (417)
                      |++++|.++.++. +..  +++|++|++++|.++.. | .+.       .+++|++|++++|.++.+|.  +..+++|++
T Consensus       382 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~  461 (636)
T 4eco_A          382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS  461 (636)
T ss_dssp             EECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred             EEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence            7777777777765 333  33677777777777653 2 244       66678888888888887775  556788888


Q ss_pred             eEeecCCCCCcCC--CC-------CCCCCcEEeccCCccCcchhhhhhh--CCCCcCEEeccCCCCCCCCCccHHHHhcC
Q psy13376        144 LNLKMNRIETIEG--LD-------HLEKLELFNIAANRIQSLASLVYLR--RFKHLGRLNIERNPVCDKENVDGFAIAMV  212 (417)
Q Consensus       144 L~Ls~N~i~~l~~--l~-------~l~~L~~L~Ls~N~i~~l~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~~~~l  212 (417)
                      |+|++|.++.++.  +.       ++++|++|++++|.++.++.  .+.  .+++|+.|++++|+++.+|.    .+..+
T Consensus       462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~~~l~~L~~L~Ls~N~l~~ip~----~~~~l  535 (636)
T 4eco_A          462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD--DFRATTLPYLVGIDLSYNSFSKFPT----QPLNS  535 (636)
T ss_dssp             EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCG--GGSTTTCTTCCEEECCSSCCSSCCC----GGGGC
T ss_pred             EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccCh--hhhhccCCCcCEEECCCCCCCCcCh----hhhcC
Confidence            8888888887752  22       22378888888888887765  333  78888888888888888765    45678


Q ss_pred             CCcccccCccc
Q psy13376        213 PQLQCYNNHII  223 (417)
Q Consensus       213 ~~L~~Ld~~~~  223 (417)
                      ++|+.|+++.+
T Consensus       536 ~~L~~L~Ls~N  546 (636)
T 4eco_A          536 STLKGFGIRNQ  546 (636)
T ss_dssp             SSCCEEECCSC
T ss_pred             CCCCEEECCCC
Confidence            88888887654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.66  E-value=2.6e-16  Score=167.03  Aligned_cols=128  Identities=27%  Similarity=0.372  Sum_probs=61.7

Q ss_pred             cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCccc----------CCccccccceeEeecCCCCCcC--C
Q psy13376         91 LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQ----------GLDTLVNLKVLNLKMNRIETIE--G  156 (417)
Q Consensus        91 l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~----------~~~~l~~L~~L~Ls~N~i~~l~--~  156 (417)
                      +..+++|+.|++++|.++.++.  +.++++|++|++++|.++.++          .+..+++|++|++++|+++.++  .
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~  555 (680)
T 1ziw_A          476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV  555 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHH
Confidence            4445555555555555554432  445555555555555554331          0344455555555555555544  2


Q ss_pred             CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHh-cCCCcccccCcc
Q psy13376        157 LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIA-MVPQLQCYNNHI  222 (417)
Q Consensus       157 l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~l~~L~~Ld~~~  222 (417)
                      |..+++|++|++++|+++.++. ..+..+++|+.|++++|.++.+++   ..+. .+++|+.++++.
T Consensus       556 ~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~~L~~l~l~~  618 (680)
T 1ziw_A          556 FKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVEK---KVFGPAFRNLTELDMRF  618 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCCH---HHHHHHHTTCSEEECTT
T ss_pred             cccccCcceeECCCCCCCcCCH-hHhCCCCCCCEEECCCCcCCccCh---hHhcccccccCEEEccC
Confidence            4455555555555555555443 234445555555555555554443   1222 344455544443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.66  E-value=1.2e-15  Score=137.98  Aligned_cols=144  Identities=22%  Similarity=0.322  Sum_probs=127.0

Q ss_pred             cEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCC
Q psy13376         76 KAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRI  151 (417)
Q Consensus        76 ~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i  151 (417)
                      +.++.++++++.++. ...++|++|++++|.++.++.  +..+++|++|++++|+++.++.  |..+++|++|++++|.+
T Consensus        10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            578888999998875 234689999999999998875  8899999999999999999886  78999999999999999


Q ss_pred             CCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        152 ETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       152 ~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      +.++.  +..+++|++|++++|.++.++. ..+..+++|+.|++++|.++.++.   ..+..+++|+.|+++.+.
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPD---GVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSCC
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCccceeCH---HHhccCCCccEEEecCCC
Confidence            99874  7899999999999999999876 467889999999999999998876   346789999999998874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.66  E-value=3.4e-16  Score=164.64  Aligned_cols=134  Identities=18%  Similarity=0.195  Sum_probs=111.7

Q ss_pred             ccccCCcchhhhhcccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccc
Q psy13376         59 LQESTNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTL  138 (417)
Q Consensus        59 ~~~~n~i~~l~~ll~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l  138 (417)
                      .++.|++..++..+++|+.|++++|.|+.++..  +++|+.|++++|.++.++..  +++|+.|++++|.|+.+|  ..+
T Consensus       167 ~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp--~~l  240 (622)
T 3g06_A          167 WAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP--VLP  240 (622)
T ss_dssp             ECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC--CCC
T ss_pred             ECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC--CCC
Confidence            344444444443357788888888888877653  47899999999999998863  589999999999999998  556


Q ss_pred             cccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCC
Q psy13376        139 VNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKE  202 (417)
Q Consensus       139 ~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~  202 (417)
                      ++|+.|++++|.|+.+|.  .+++|++|++++|.|+.+|.  .+..+++|+.|++++|++++..
T Consensus       241 ~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~--~l~~l~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          241 SELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSERT  300 (622)
T ss_dssp             TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCG--GGGGSCTTCEEECCSCCCCHHH
T ss_pred             CcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCH--HHhhccccCEEEecCCCCCCcC
Confidence            899999999999999987  78899999999999999875  5789999999999999998643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.65  E-value=8.2e-16  Score=158.90  Aligned_cols=159  Identities=20%  Similarity=0.225  Sum_probs=120.9

Q ss_pred             ccccccCCcchhh-----hh--cccccEEEeecCCCCCCCC----cCCCcccceEeeeCCCCCCcCC-CCCCccCceeee
Q psy13376         57 SLLQESTNLAEKL-----QI--YKLIKAVNLRIKTLRKIEN----LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDL  124 (417)
Q Consensus        57 ~l~~~~n~i~~l~-----~l--l~~L~~L~Ls~N~i~~i~~----l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~L  124 (417)
                      .+.++.|++....     .+  +++|+.|++++|.++.++.    +..+++|++|++++|+++.+|. +..+++|++|++
T Consensus       338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~L  417 (549)
T 2z81_A          338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL  417 (549)
T ss_dssp             EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEEC
T ss_pred             EEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEEC
Confidence            4456777776532     12  6778888888888877642    6777888888888888887764 677778888888


Q ss_pred             eCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCc
Q psy13376        125 GYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV  204 (417)
Q Consensus       125 s~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~  204 (417)
                      ++|.++.++... .++|++|++++|+++.++  ..+++|++|++++|+++.+|..   ..+++|+.|++++|+++..++ 
T Consensus       418 s~N~l~~l~~~~-~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l~~ip~~---~~l~~L~~L~Ls~N~l~~~~~-  490 (549)
T 2z81_A          418 SSTGIRVVKTCI-PQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKTLPDA---SLFPVLLVMKISRNQLKSVPD-  490 (549)
T ss_dssp             TTSCCSCCCTTS-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSSCCCG---GGCTTCCEEECCSSCCCCCCT-
T ss_pred             CCCCcccccchh-cCCceEEECCCCChhhhc--ccCChhcEEECCCCccCcCCCc---ccCccCCEEecCCCccCCcCH-
Confidence            888887776511 257888888888877764  5788999999999999988763   568899999999999998776 


Q ss_pred             cHHHHhcCCCcccccCcccC
Q psy13376        205 DGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       205 ~~~~~~~l~~L~~Ld~~~~~  224 (417)
                        ..+..+++|+.|+++.+.
T Consensus       491 --~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          491 --GIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             --TGGGGCTTCCEEECCSSC
T ss_pred             --HHHhcCcccCEEEecCCC
Confidence              346788999999988776

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.65  E-value=4.7e-17  Score=170.38  Aligned_cols=164  Identities=14%  Similarity=0.151  Sum_probs=85.1

Q ss_pred             ccccccCCcchhh---h-h--cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcC---CCCCCccCceeeeeC
Q psy13376         57 SLLQESTNLAEKL---Q-I--YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIE---NLDQLVCLEKLDLGY  126 (417)
Q Consensus        57 ~l~~~~n~i~~l~---~-l--l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~  126 (417)
                      .+.++.|++..+.   . +  +++|+.|++++|.++.++. +..+++|+.|++++|.++.++   .+..+++|++|++++
T Consensus       354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  433 (606)
T 3vq2_A          354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY  433 (606)
T ss_dssp             EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred             EEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence            3445666665442   1 1  5666666666666655543 555566666666666555442   245555555555555


Q ss_pred             CCCCccc-C-CccccccceeEeecCCCCC--cC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376        127 NRIEQIQ-G-LDTLVNLKVLNLKMNRIET--IE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       127 N~l~~l~-~-~~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~  201 (417)
                      |.++... . +..+++|++|++++|.++.  ++ .+..+++|++|++++|.++.+++ ..+..+++|+.|++++|+++..
T Consensus       434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~  512 (606)
T 3vq2_A          434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTLHRLQLLNMSHNNLLFL  512 (606)
T ss_dssp             SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCE
T ss_pred             CCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-hhhcccccCCEEECCCCcCCCc
Confidence            5555432 2 5555555555555555553  22 34555555555555555555433 2344555555555555555544


Q ss_pred             CCccHHHHhcCCCcccccCcccC
Q psy13376        202 ENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       202 ~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      .+   ..+..+++|+.|+++.+.
T Consensus       513 ~~---~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          513 DS---SHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             EG---GGTTTCTTCCEEECTTSC
T ss_pred             CH---HHccCCCcCCEEECCCCc
Confidence            22   133445555555554443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.65  E-value=9.5e-17  Score=154.88  Aligned_cols=206  Identities=17%  Similarity=0.184  Sum_probs=128.5

Q ss_pred             ccceeeccccccCCC---C-chhhhHHHHHhcCCC----C--CChhhhhccccccccccccccccCCcc-hhhh-h--cc
Q psy13376          8 DRIKKIGLIKDRAGD---E-STLKNLAQVLQNAPA----I--INEDLLSKKGVISENLLSLLQESTNLA-EKLQ-I--YK   73 (417)
Q Consensus         8 ~~l~~l~l~~n~l~d---l-~~L~~l~~L~~~~~~----~--~~~~~l~~~~~~~~~~~~l~~~~n~i~-~l~~-l--l~   73 (417)
                      .+++.+++..|.++.   + ..+.++.+|..+...    +  .-...+..+    .....+.++.|++. .++. +  ++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l----~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL----TQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC----TTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC----CCCCEEECcCCeeCCcCCHHHhCCC
Confidence            578889999998875   2 234443333332210    0  000011111    11123456666665 3332 2  67


Q ss_pred             cccEEEeecCCCCC-CCC-cCCCcccceEeeeCCCCC-CcCC-CCCCc-cCceeeeeCCCCC-cccC-CccccccceeEe
Q psy13376         74 LIKAVNLRIKTLRK-IEN-LWMMENLVELDLSMNHIG-VIEN-LDQLV-CLEKLDLGYNRIE-QIQG-LDTLVNLKVLNL  146 (417)
Q Consensus        74 ~L~~L~Ls~N~i~~-i~~-l~~l~~L~~L~Ls~N~l~-~l~~-l~~l~-~L~~L~Ls~N~l~-~l~~-~~~l~~L~~L~L  146 (417)
                      +|++|++++|.++. ++. +..+++|++|++++|.++ .+|. +..++ +|++|++++|.++ .+|. +..++ |++|++
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L  204 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL  204 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence            77777777777773 333 677777777777777776 4443 66666 7777777777776 3443 55555 777777


Q ss_pred             ecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCC-CCCccHHHHhcCCCcccccCccc
Q psy13376        147 KMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCD-KENVDGFAIAMVPQLQCYNNHII  223 (417)
Q Consensus       147 s~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l~~L~~Ld~~~~  223 (417)
                      ++|.++...  .+..+++|++|++++|.++...+  .+..+++|++|++++|.+++ +|.    .+..+++|+.|+++.+
T Consensus       205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQ----GLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCCG----GGGGCTTCCEEECCSS
T ss_pred             cCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEEECcCCcccCcCCh----HHhcCcCCCEEECcCC
Confidence            777776542  46777888888888888876443  35677888888888888873 333    4567888888887766


Q ss_pred             C
Q psy13376        224 L  224 (417)
Q Consensus       224 ~  224 (417)
                      .
T Consensus       279 ~  279 (313)
T 1ogq_A          279 N  279 (313)
T ss_dssp             E
T ss_pred             c
Confidence            4

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.65  E-value=1.8e-16  Score=167.65  Aligned_cols=212  Identities=13%  Similarity=0.143  Sum_probs=139.3

Q ss_pred             ccccceeeccccccCC-CCchhhhHHHHHhcCCCCCChhhhhccc----cccccccccccccCCcchhhhh-----cccc
Q psy13376          6 TVDRIKKIGLIKDRAG-DESTLKNLAQVLQNAPAIINEDLLSKKG----VISENLLSLLQESTNLAEKLQI-----YKLI   75 (417)
Q Consensus         6 ~~~~l~~l~l~~n~l~-dl~~L~~l~~L~~~~~~~~~~~~l~~~~----~~~~~~~~l~~~~n~i~~l~~l-----l~~L   75 (417)
                      .+++++.+++..|.++ .++.+..+.+|..+.   ++.+.+..++    ........+.++.|++..++..     +++|
T Consensus       328 ~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~---L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L  404 (636)
T 4eco_A          328 KMKKLGMLECLYNQLEGKLPAFGSEIKLASLN---LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM  404 (636)
T ss_dssp             TCTTCCEEECCSCCCEEECCCCEEEEEESEEE---CCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred             cCCCCCEEeCcCCcCccchhhhCCCCCCCEEE---CCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence            4467888888888888 665444444444443   2222222210    0111123456777887766654     3378


Q ss_pred             cEEEeecCCCCCCCC--cC-------CCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--Cccc----
Q psy13376         76 KAVNLRIKTLRKIEN--LW-------MMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTL----  138 (417)
Q Consensus        76 ~~L~Ls~N~i~~i~~--l~-------~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l----  138 (417)
                      +.|++++|.++...+  +.       .+++|++|++++|.++.++.  +..+++|++|++++|.++.+|.  +...    
T Consensus       405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~  484 (636)
T 4eco_A          405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF  484 (636)
T ss_dssp             EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred             CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence            888888888876422  54       66788888888888887775  5567888888888888887774  3322    


Q ss_pred             ---cccceeEeecCCCCCcC-CCC--CCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccC------CCCCCCCCccH
Q psy13376        139 ---VNLKVLNLKMNRIETIE-GLD--HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIER------NPVCDKENVDG  206 (417)
Q Consensus       139 ---~~L~~L~Ls~N~i~~l~-~l~--~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~------N~l~~~~~~~~  206 (417)
                         ++|++|++++|+++.+| .+.  .+++|++|++++|+++.+|.  .+..+++|+.|++++      |.+....+   
T Consensus       485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p---  559 (636)
T 4eco_A          485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTLREWP---  559 (636)
T ss_dssp             TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCC--GGGGCSSCCEEECCSCBCTTCCBCCCCCC---
T ss_pred             cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcCh--hhhcCCCCCEEECCCCcccccCcccccCh---
Confidence               37888888888888776 343  78888888888888887654  456778888888844      44443222   


Q ss_pred             HHHhcCCCcccccCcccCH
Q psy13376        207 FAIAMVPQLQCYNNHIILE  225 (417)
Q Consensus       207 ~~~~~l~~L~~Ld~~~~~~  225 (417)
                      ..+..+++|+.|+++.+..
T Consensus       560 ~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          560 EGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             TTGGGCSSCCEEECCSSCC
T ss_pred             HHHhcCCCCCEEECCCCcC
Confidence            2456678888888777653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.65  E-value=3.2e-16  Score=166.32  Aligned_cols=212  Identities=16%  Similarity=0.218  Sum_probs=113.0

Q ss_pred             cccceeeccccccCCCCch--hhhHHHHHhcCCC-------CCChhhhhccccccccccccccccCCcchhhhh----cc
Q psy13376          7 VDRIKKIGLIKDRAGDEST--LKNLAQVLQNAPA-------IINEDLLSKKGVISENLLSLLQESTNLAEKLQI----YK   73 (417)
Q Consensus         7 ~~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~-------~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l----l~   73 (417)
                      +++++.+++..|.++.+.+  +.++.+|..+...       .+....+..+  .......+.++.|++..+..-    ++
T Consensus       328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~  405 (680)
T 1ziw_A          328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLHILNLTKNKISKIESDAFSWLG  405 (680)
T ss_dssp             CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG--TTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccc--ccCcCceEECCCCCCCeEChhhhhCCC
Confidence            4667788888888777654  4444444333311       0000001000  001112344556666555322    56


Q ss_pred             cccEEEeecCCCCC-CC--CcCCCcccceEeeeCCCCCCcC----------------------------CCCCCccCcee
Q psy13376         74 LIKAVNLRIKTLRK-IE--NLWMMENLVELDLSMNHIGVIE----------------------------NLDQLVCLEKL  122 (417)
Q Consensus        74 ~L~~L~Ls~N~i~~-i~--~l~~l~~L~~L~Ls~N~l~~l~----------------------------~l~~l~~L~~L  122 (417)
                      +|+.|++++|.++. ++  .+..+++|++|++++|.++.++                            .+..+++|++|
T Consensus       406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L  485 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL  485 (680)
T ss_dssp             TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred             CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence            66666666666653 32  2555555666666555544332                            24555666666


Q ss_pred             eeeCCCCCcccC--CccccccceeEeecCCCCCcC----------CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCE
Q psy13376        123 DLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE----------GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGR  190 (417)
Q Consensus       123 ~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~----------~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~  190 (417)
                      ++++|+++.++.  |..+++|++|++++|.++.++          .+..+++|++|++++|+++.++. ..|..+++|+.
T Consensus       486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~  564 (680)
T 1ziw_A          486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKI  564 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred             ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH-HHcccccCcce
Confidence            666666665553  556666666666666665441          14555666666666666665554 34556666666


Q ss_pred             EeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        191 LNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       191 L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      |++++|.++.++.   ..+..+++|+.|+++.+.
T Consensus       565 L~Ls~N~l~~l~~---~~~~~l~~L~~L~L~~N~  595 (680)
T 1ziw_A          565 IDLGLNNLNTLPA---SVFNNQVSLKSLNLQKNL  595 (680)
T ss_dssp             EECCSSCCCCCCT---TTTTTCTTCCEEECTTSC
T ss_pred             eECCCCCCCcCCH---hHhCCCCCCCEEECCCCc
Confidence            6666666666554   234455666666665553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.64  E-value=1.4e-17  Score=181.46  Aligned_cols=146  Identities=22%  Similarity=0.297  Sum_probs=76.2

Q ss_pred             cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccCCccccccceeEee
Q psy13376         72 YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLK  147 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls  147 (417)
                      +++|+.|++++|.++.+.+  +..+++|+.|++++|.++.++.  |..+++|++|++++|.++.++.   +++|+.|+++
T Consensus       313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~  389 (844)
T 3j0a_A          313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF---IPSIPDIFLS  389 (844)
T ss_dssp             CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS---CCSCSEEEEE
T ss_pred             CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC---CCCcchhccC
Confidence            4444444444444444421  4444444444444444444432  4444444444444444443332   3344444444


Q ss_pred             cCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        148 MNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       148 ~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      +|+++.++..  ..+++.|++++|.++.++....+..+++|+.|++++|+++..+..  ..+..+++|+.|+++.+.
T Consensus       390 ~N~l~~l~~~--~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~~~~L~~L~Ls~N~  462 (844)
T 3j0a_A          390 GNKLVTLPKI--NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD--QTPSENPSLEQLFLGENM  462 (844)
T ss_dssp             SCCCCCCCCC--CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS--SSSCSCTTCCBCEEESCC
T ss_pred             CCCccccccc--ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccc--cccccCCccccccCCCCc
Confidence            4444444322  345666666666666665544556777778888888777765431  123346777777766654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=1.6e-16  Score=140.08  Aligned_cols=129  Identities=22%  Similarity=0.229  Sum_probs=116.0

Q ss_pred             cccccEEEeecCCCCCCCCcCCCc-ccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC--CccccccceeEeec
Q psy13376         72 YKLIKAVNLRIKTLRKIENLWMME-NLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKM  148 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~l~~l~-~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~  148 (417)
                      +++|+.|++++|.++.++.+..+. +|++|++++|.++.++.+..+++|++|++++|.|+.++.  +..+++|++|++++
T Consensus        18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~   97 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   97 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence            678999999999999998877666 999999999999999889999999999999999999985  68999999999999


Q ss_pred             CCCCCcC---CCCCCCCCcEEeccCCccCcchhh--hhhhCCCCcCEEeccCCCCCC
Q psy13376        149 NRIETIE---GLDHLEKLELFNIAANRIQSLASL--VYLRRFKHLGRLNIERNPVCD  200 (417)
Q Consensus       149 N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~N~l~~  200 (417)
                      |.|+.++   .+..+++|++|++++|.++.++..  ..+..+++|+.|++++|++..
T Consensus        98 N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           98 NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999887   478899999999999999987652  136889999999999998754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=7.1e-16  Score=167.66  Aligned_cols=159  Identities=16%  Similarity=0.205  Sum_probs=85.2

Q ss_pred             ccccCCcchhhhh--cccccEEEeecCCCCCCCC-cCCCcc-cceEeeeCCCCCCcCC-CCC------------------
Q psy13376         59 LQESTNLAEKLQI--YKLIKAVNLRIKTLRKIEN-LWMMEN-LVELDLSMNHIGVIEN-LDQ------------------  115 (417)
Q Consensus        59 ~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~-l~~l~~-L~~L~Ls~N~l~~l~~-l~~------------------  115 (417)
                      .++.|++..++.+  +++|+.|++++|.++.++. +..+++ |+.|++++|.++.+|. +..                  
T Consensus       579 ~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g  658 (876)
T 4ecn_A          579 DCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS  658 (876)
T ss_dssp             ECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             ECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence            4455555544433  4555555555555555443 445555 5555555555554442 222                  


Q ss_pred             -------------CccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcCC--CC-------CCCCCcEEeccCC
Q psy13376        116 -------------LVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LD-------HLEKLELFNIAAN  171 (417)
Q Consensus       116 -------------l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~--l~-------~l~~L~~L~Ls~N  171 (417)
                                   +++|+.|++++|.++.+|.  +..+++|+.|+|++|.|+.+|.  +.       ++++|+.|++++|
T Consensus       659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N  738 (876)
T 4ecn_A          659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN  738 (876)
T ss_dssp             TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred             ccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC
Confidence                         2355555555555555553  3355666666666666665542  11       2236666666666


Q ss_pred             ccCcchhhhhhh--CCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCccc
Q psy13376        172 RIQSLASLVYLR--RFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHII  223 (417)
Q Consensus       172 ~i~~l~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~  223 (417)
                      +++.+|.  .+.  .+++|+.|+|++|+++.+|.    .+..+++|+.|+++.+
T Consensus       739 ~L~~lp~--~l~~~~l~~L~~L~Ls~N~L~~lp~----~l~~L~~L~~L~Ls~N  786 (876)
T 4ecn_A          739 KLTSLSD--DFRATTLPYLSNMDVSYNCFSSFPT----QPLNSSQLKAFGIRHQ  786 (876)
T ss_dssp             CCCCCCG--GGSTTTCTTCCEEECCSSCCSSCCC----GGGGCTTCCEEECCCC
T ss_pred             CCccchH--HhhhccCCCcCEEEeCCCCCCccch----hhhcCCCCCEEECCCC
Confidence            6666554  222  56666666666666666554    3445666666666553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.63  E-value=1.4e-15  Score=157.11  Aligned_cols=191  Identities=19%  Similarity=0.251  Sum_probs=146.9

Q ss_pred             ccceeeccccccCCCCchh--hhHHHHHhcCCC--CCChhhhhc---cccccccccccccccCCcchhhh----h--ccc
Q psy13376          8 DRIKKIGLIKDRAGDESTL--KNLAQVLQNAPA--IINEDLLSK---KGVISENLLSLLQESTNLAEKLQ----I--YKL   74 (417)
Q Consensus         8 ~~l~~l~l~~n~l~dl~~L--~~l~~L~~~~~~--~~~~~~l~~---~~~~~~~~~~l~~~~n~i~~l~~----l--l~~   74 (417)
                      ++++.+++..|.++.++.-  ..+.+|..+...  .+.......   .+. ......+.+++|++..+..    +  +++
T Consensus       310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~  388 (549)
T 2z81_A          310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA-WPSLQTLVLSQNHLRSMQKTGEILLTLKN  388 (549)
T ss_dssp             TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTS-STTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred             ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhc-cccCcEEEccCCcccccccchhhhhcCCC
Confidence            4677788888888777642  234444443311  121111100   101 1223456799999988753    3  899


Q ss_pred             ccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCC
Q psy13376         75 IKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET  153 (417)
Q Consensus        75 L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~  153 (417)
                      |+.|++++|+++.++. +..+++|++|++++|.++.++... .++|++|++++|+++.++  ..+++|++|++++|+|+.
T Consensus       389 L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~-~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l~~  465 (549)
T 2z81_A          389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKT  465 (549)
T ss_dssp             CCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS
T ss_pred             CCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh-cCCceEEECCCCChhhhc--ccCChhcEEECCCCccCc
Confidence            9999999999999976 888999999999999999887521 368999999999998875  578899999999999999


Q ss_pred             cCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        154 IEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       154 l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      +|....+++|++|++++|+++.+++ ..+..+++|+.|++++|++.+..+
T Consensus       466 ip~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          466 LPDASLFPVLLVMKISRNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCCGGGCTTCCEEECCSSCCCCCCT-TGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCCcccCccCCEEecCCCccCCcCH-HHHhcCcccCEEEecCCCccCCCc
Confidence            9988889999999999999999876 567899999999999999977544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=1e-15  Score=166.40  Aligned_cols=129  Identities=19%  Similarity=0.254  Sum_probs=74.5

Q ss_pred             cccEEEeecCCCCCCCC---cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC-Cccccc-cceeEeec
Q psy13376         74 LIKAVNLRIKTLRKIEN---LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG-LDTLVN-LKVLNLKM  148 (417)
Q Consensus        74 ~L~~L~Ls~N~i~~i~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~-L~~L~Ls~  148 (417)
                      +|+.|++++|.++.+|.   +..+++|+.|++++|.++.+|.+..+++|+.|++++|.++.+|. +..+++ |++|++++
T Consensus       549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH  628 (876)
T ss_dssp             TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred             CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence            56666666666665554   55666666666666666655555666666666666666665553 555555 66666666


Q ss_pred             CCCCCcCC-CCC-------------------------------CCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCC
Q psy13376        149 NRIETIEG-LDH-------------------------------LEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERN  196 (417)
Q Consensus       149 N~i~~l~~-l~~-------------------------------l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N  196 (417)
                      |.++.+|. +..                               +++|+.|++++|.++.++. ..+..+++|+.|++++|
T Consensus       629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~l~~L~~L~Ls~N  707 (876)
T 4ecn_A          629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNN  707 (876)
T ss_dssp             SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH-HHHHTTCCCSEEECCSC
T ss_pred             CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH-HHHccCCCCCEEECCCC
Confidence            66555542 222                               2255555555555555544 23445666666666666


Q ss_pred             CCCCCCC
Q psy13376        197 PVCDKEN  203 (417)
Q Consensus       197 ~l~~~~~  203 (417)
                      .++.+|.
T Consensus       708 ~L~~ip~  714 (876)
T 4ecn_A          708 LMTSIPE  714 (876)
T ss_dssp             CCSCCCT
T ss_pred             cCCccCh
Confidence            6665554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.62  E-value=1.7e-15  Score=158.56  Aligned_cols=163  Identities=19%  Similarity=0.200  Sum_probs=82.1

Q ss_pred             ccccccCCcchhhh--h--cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCc-C-CCCCCccCceeeeeCCC
Q psy13376         57 SLLQESTNLAEKLQ--I--YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVI-E-NLDQLVCLEKLDLGYNR  128 (417)
Q Consensus        57 ~l~~~~n~i~~l~~--l--l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~  128 (417)
                      .+.++.|++..+..  +  +++|++|++++|.++.+++  |..+++|++|++++|.++.+ | .|+++++|++|++++|.
T Consensus        36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  115 (606)
T 3vq2_A           36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK  115 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC
T ss_pred             EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc
Confidence            33455555554443  1  5555555555555555432  55555555555555555554 2 25555555555555555


Q ss_pred             CCcccC--CccccccceeEeecCCCCC--cC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCC----cCEEeccCCCCC
Q psy13376        129 IEQIQG--LDTLVNLKVLNLKMNRIET--IE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKH----LGRLNIERNPVC  199 (417)
Q Consensus       129 l~~l~~--~~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~----L~~L~L~~N~l~  199 (417)
                      ++.++.  +..+++|++|++++|.++.  +| .++.+++|++|++++|.++.++. ..+..+++    +..+++++|+++
T Consensus       116 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~~l~~L~l~~n~l~  194 (606)
T 3vq2_A          116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV-NDLQFLRENPQVNLSLDMSLNPID  194 (606)
T ss_dssp             CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT-TTTHHHHHCTTCCCEEECTTCCCC
T ss_pred             cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh-hhhhhhhccccccceeeccCCCcc
Confidence            555442  5555555555555555553  22 35555555555555555555432 12222222    335555555555


Q ss_pred             CCCCccHHHHhcCCCcccccCcccC
Q psy13376        200 DKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       200 ~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      .++.   ..+ ...+|+.|+++.+.
T Consensus       195 ~~~~---~~~-~~~~L~~L~L~~n~  215 (606)
T 3vq2_A          195 FIQD---QAF-QGIKLHELTLRGNF  215 (606)
T ss_dssp             EECT---TTT-TTCEEEEEEEESCC
T ss_pred             eeCc---ccc-cCceeeeeeccCCc
Confidence            5443   111 22367777766654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.62  E-value=5.4e-16  Score=149.37  Aligned_cols=151  Identities=14%  Similarity=0.097  Sum_probs=120.6

Q ss_pred             cccccEEEeecCCCCC-CCC-c--CCCcccceEeeeCCCCCCcCC-CCCC-----ccCceeeeeCCCCCcccC--Ccccc
Q psy13376         72 YKLIKAVNLRIKTLRK-IEN-L--WMMENLVELDLSMNHIGVIEN-LDQL-----VCLEKLDLGYNRIEQIQG--LDTLV  139 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~-i~~-l--~~l~~L~~L~Ls~N~l~~l~~-l~~l-----~~L~~L~Ls~N~l~~l~~--~~~l~  139 (417)
                      +++|++|++++|.++. ++. +  ..+++|++|++++|.++.++. +..+     ++|++|++++|+++.++.  +..++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            7889999999999985 444 3  789999999999999998764 5555     899999999999998873  88999


Q ss_pred             ccceeEeecCCCCCc----CC--CCCCCCCcEEeccCCccCcchhh--hhhhCCCCcCEEeccCCCCCCCCCccHHHHhc
Q psy13376        140 NLKVLNLKMNRIETI----EG--LDHLEKLELFNIAANRIQSLASL--VYLRRFKHLGRLNIERNPVCDKENVDGFAIAM  211 (417)
Q Consensus       140 ~L~~L~Ls~N~i~~l----~~--l~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  211 (417)
                      +|++|++++|++...    +.  +..+++|++|++++|.++.++.+  ..+..+++|+.|++++|.++..++.  ..+..
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~  251 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--PSCDW  251 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC--SCCCC
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch--hhhhh
Confidence            999999999987642    22  38889999999999999865542  3456789999999999999885521  12345


Q ss_pred             CCCcccccCcccC
Q psy13376        212 VPQLQCYNNHIIL  224 (417)
Q Consensus       212 l~~L~~Ld~~~~~  224 (417)
                      +++|+.|+++.+.
T Consensus       252 l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          252 PSQLNSLNLSFTG  264 (312)
T ss_dssp             CTTCCEEECTTSC
T ss_pred             cCCCCEEECCCCc
Confidence            7899999988875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=7.8e-16  Score=131.67  Aligned_cols=124  Identities=26%  Similarity=0.267  Sum_probs=111.1

Q ss_pred             cccccEEEeecCCCC--CCCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCc-ccC-CccccccceeEe
Q psy13376         72 YKLIKAVNLRIKTLR--KIEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQ-IQG-LDTLVNLKVLNL  146 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~--~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l~~-~~~l~~L~~L~L  146 (417)
                      .++++.|++++|.++  .++. +..+++|++|++++|.++.++.+..+++|++|++++|.++. +|. +..+++|++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            688999999999999  6766 78999999999999999999779999999999999999998 665 667999999999


Q ss_pred             ecCCCCCc---CCCCCCCCCcEEeccCCccCcchhh--hhhhCCCCcCEEeccC
Q psy13376        147 KMNRIETI---EGLDHLEKLELFNIAANRIQSLASL--VYLRRFKHLGRLNIER  195 (417)
Q Consensus       147 s~N~i~~l---~~l~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~  195 (417)
                      ++|.++.+   +.+..+++|++|++++|.++.++..  ..+..+++|+.|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999987   4688999999999999999998762  3678899999999864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.61  E-value=3.5e-15  Score=155.23  Aligned_cols=179  Identities=16%  Similarity=0.212  Sum_probs=136.5

Q ss_pred             cceeeccccccCCCCch-hhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhhcccccEEEeecCCCCC
Q psy13376          9 RIKKIGLIKDRAGDEST-LKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQIYKLIKAVNLRIKTLRK   87 (417)
Q Consensus         9 ~l~~l~l~~n~l~dl~~-L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~ll~~L~~L~Ls~N~i~~   87 (417)
                      +++.+++..|.++.++. +.  .+|..+.   +..+.+..++........|.+++|+|..++.+..+|+.|++++|.|+.
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~---Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~  134 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLE---ITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTM  134 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEE---CCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEE---CcCCCCcccccccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCC
Confidence            56777777777777654 11  1222222   222222222111122345678889998877754499999999999999


Q ss_pred             CCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCCC----
Q psy13376         88 IENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKL----  163 (417)
Q Consensus        88 i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L----  163 (417)
                      ++.  .+++|+.|++++|.|+.+|.  .+++|++|++++|.|+.+|.+.  ++|++|+|++|+|+.+|.+..  +|    
T Consensus       135 lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~~  206 (571)
T 3cvr_A          135 LPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPV--RNHHSE  206 (571)
T ss_dssp             CCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC---------
T ss_pred             CCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHH--hhhccc
Confidence            988  78999999999999999987  6789999999999999998855  899999999999999987443  77    


Q ss_pred             ---cEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCC
Q psy13376        164 ---ELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKE  202 (417)
Q Consensus       164 ---~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~  202 (417)
                         +.|++++|.|+.+|.  .+..+++|+.|++++|++++..
T Consensus       207 ~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          207 ETEIFFRCRENRITHIPE--NILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             -CCEEEECCSSCCCCCCG--GGGGSCTTEEEECCSSSCCHHH
T ss_pred             ccceEEecCCCcceecCH--HHhcCCCCCEEEeeCCcCCCcC
Confidence               999999999999986  4456999999999999998743

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=3.2e-15  Score=134.09  Aligned_cols=126  Identities=25%  Similarity=0.363  Sum_probs=104.8

Q ss_pred             cEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCC
Q psy13376         76 KAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIE  152 (417)
Q Consensus        76 ~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~  152 (417)
                      +.+++++|+++.+|.- -.++|++|++++|.|+.++. +..+++|++|++++|.|+.++.  |..+++|++|+|++|+|+
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            5688888888888751 13688999999999988874 8888899999999999988875  888899999999999998


Q ss_pred             CcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        153 TIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       153 ~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      .++  .|..+++|++|++++|.|+.++. ..+..+++|+.|++++|++.....
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSGG
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCCc
Confidence            886  48888999999999999988876 467788899999999999876544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.60  E-value=1.7e-15  Score=156.94  Aligned_cols=130  Identities=27%  Similarity=0.354  Sum_probs=59.4

Q ss_pred             cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeE
Q psy13376         72 YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLN  145 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~  145 (417)
                      .++++.|++++|.++.++.  |..+++|++|++++|.++.++.  |.++++|++|++++|.++.++.  |..+++|++|+
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            3344445555554444432  4444445555555544444431  4444455555555554444432  44444455555


Q ss_pred             eecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376        146 LKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       146 Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~  201 (417)
                      +++|.++.++  .++.+++|++|++++|.++.++....+..+++|++|++++|.++..
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            5554444443  2444444555555554444321112334444445555544444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.60  E-value=4.1e-16  Score=161.73  Aligned_cols=164  Identities=17%  Similarity=0.182  Sum_probs=136.7

Q ss_pred             ccccccCCcchhh----hh--cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcC---CCCCCccCceeeeeC
Q psy13376         57 SLLQESTNLAEKL----QI--YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIE---NLDQLVCLEKLDLGY  126 (417)
Q Consensus        57 ~l~~~~n~i~~l~----~l--l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~  126 (417)
                      .+.++.|++....    .+  +++|+.|++++|.++.++. +..+++|++|++++|.++..+   .+..+++|++|++++
T Consensus       351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  430 (570)
T 2z63_A          351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH  430 (570)
T ss_dssp             EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT
T ss_pred             EEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC
Confidence            4567777777653    22  7889999999999888765 888999999999999988763   388899999999999


Q ss_pred             CCCCcccC--CccccccceeEeecCCCC--CcC-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376        127 NRIEQIQG--LDTLVNLKVLNLKMNRIE--TIE-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       127 N~l~~l~~--~~~l~~L~~L~Ls~N~i~--~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~  201 (417)
                      |.++....  +..+++|++|++++|.++  .+| .+..+++|++|++++|+++.+.+ ..+..+++|+.|++++|+++..
T Consensus       431 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~  509 (570)
T 2z63_A          431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKSV  509 (570)
T ss_dssp             SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCC
T ss_pred             CcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh-hhhhcccCCCEEeCCCCcCCCC
Confidence            99986543  888999999999999987  355 68899999999999999998754 4678899999999999999988


Q ss_pred             CCccHHHHhcCCCcccccCcccC
Q psy13376        202 ENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       202 ~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      ++   ..+..+++|+.|+++.+.
T Consensus       510 ~~---~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          510 PD---GIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CT---TTTTTCTTCCEEECCSSC
T ss_pred             CH---HHhhcccCCcEEEecCCc
Confidence            75   356788999999988765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=5.1e-15  Score=132.53  Aligned_cols=125  Identities=25%  Similarity=0.334  Sum_probs=105.1

Q ss_pred             cEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC---CCCCccCceeeeeCCCCCcccC--CccccccceeEeecC
Q psy13376         76 KAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN---LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN  149 (417)
Q Consensus        76 ~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~---l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N  149 (417)
                      +.+++++|+++.+|. +.  +++++|++++|.++.++.   +..+++|++|+|++|.|+.+++  |..+++|++|+|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            678899999988876 32  389999999999998863   7889999999999999988843  888999999999999


Q ss_pred             CCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        150 RIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       150 ~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      +|+.++  .+..+++|++|++++|+|+.+.+ ..+..+++|++|++++|++.....
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcCc
Confidence            999886  38889999999999999988755 467888999999999999886544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=5.1e-15  Score=145.57  Aligned_cols=149  Identities=19%  Similarity=0.196  Sum_probs=126.2

Q ss_pred             ccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC--CC-CCccCceeeeeCCCCCcccC--CccccccceeEeecC
Q psy13376         75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LD-QLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN  149 (417)
Q Consensus        75 L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~-~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N  149 (417)
                      -+.+++++++++.+|. .-.+.++.|+|++|.|+.++.  +. .+++|++|+|++|+|+.++.  |..+++|++|+|++|
T Consensus        20 ~~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TTEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            3689999999999986 123568999999999998864  66 89999999999999999984  999999999999999


Q ss_pred             CCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCH
Q psy13376        150 RIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILE  225 (417)
Q Consensus       150 ~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~  225 (417)
                      +|+.++  .|..+++|++|+|++|.|+.++. ..|..+++|+.|+|++|.++.++.........+++|+.||++.+..
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            999986  48999999999999999999865 5778999999999999999998872211225789999999987753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.59  E-value=1.5e-15  Score=163.94  Aligned_cols=81  Identities=26%  Similarity=0.263  Sum_probs=45.6

Q ss_pred             cccccEEEeecCCCCCC-CC-cCCCcccceEeeeCCCCC-CcCC-CCCCccCceeeeeCCCCC-cccC-CccccccceeE
Q psy13376         72 YKLIKAVNLRIKTLRKI-EN-LWMMENLVELDLSMNHIG-VIEN-LDQLVCLEKLDLGYNRIE-QIQG-LDTLVNLKVLN  145 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i-~~-l~~l~~L~~L~Ls~N~l~-~l~~-l~~l~~L~~L~Ls~N~l~-~l~~-~~~l~~L~~L~  145 (417)
                      +++|+.|++++|.++.. +. +..+++|++|++++|+++ .+|. ++.+++|++|++++|+++ .+|. +..+++|+.|+
T Consensus       465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD  544 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred             CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence            55666666666666532 22 555666666666666665 3332 555666666666666665 3332 55555566666


Q ss_pred             eecCCCC
Q psy13376        146 LKMNRIE  152 (417)
Q Consensus       146 Ls~N~i~  152 (417)
                      +++|.++
T Consensus       545 Ls~N~l~  551 (768)
T 3rgz_A          545 LNTNLFN  551 (768)
T ss_dssp             CCSSEEE
T ss_pred             CCCCccC
Confidence            6555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.58  E-value=4.5e-15  Score=152.51  Aligned_cols=162  Identities=18%  Similarity=0.180  Sum_probs=113.7

Q ss_pred             cccccCCcchhhh--hcccccEEEeecCCCCCC--CCcCCCcccceEeeeCCCCCCcCC----CCCCccCceeeeeCCCC
Q psy13376         58 LLQESTNLAEKLQ--IYKLIKAVNLRIKTLRKI--ENLWMMENLVELDLSMNHIGVIEN----LDQLVCLEKLDLGYNRI  129 (417)
Q Consensus        58 l~~~~n~i~~l~~--ll~~L~~L~Ls~N~i~~i--~~l~~l~~L~~L~Ls~N~l~~l~~----l~~l~~L~~L~Ls~N~l  129 (417)
                      +.++.|.+.....  .+++|++|++++|.++..  +.+..+++|++|++++|+++.++.    +..+++|++|++++|.+
T Consensus       307 L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l  386 (520)
T 2z7x_B          307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV  386 (520)
T ss_dssp             EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred             EEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence            3445555554442  267777888888877763  237777788888888888776432    67777888888888888


Q ss_pred             Cc-ccC--CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccH
Q psy13376        130 EQ-IQG--LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDG  206 (417)
Q Consensus       130 ~~-l~~--~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~  206 (417)
                      +. +|.  +..+++|++|++++|+++....-.-.++|++|++++|+|+.+|.  .+..+++|+.|++++|+++.+|.   
T Consensus       387 ~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l~~---  461 (520)
T 2z7x_B          387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPK--QVVKLEALQELNVASNQLKSVPD---  461 (520)
T ss_dssp             BCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCG--GGGGCTTCCEEECCSSCCCCCCT---
T ss_pred             CcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccch--hhhcCCCCCEEECCCCcCCccCH---
Confidence            76 663  67777888888888877543211111688888888888887775  33478888888888888888776   


Q ss_pred             HHHhcCCCcccccCcccC
Q psy13376        207 FAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       207 ~~~~~l~~L~~Ld~~~~~  224 (417)
                      ..+..+++|+.|+++.++
T Consensus       462 ~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          462 GIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             TTTTTCTTCCEEECCSSC
T ss_pred             HHhccCCcccEEECcCCC
Confidence            245678888888877765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.58  E-value=2e-15  Score=145.20  Aligned_cols=130  Identities=11%  Similarity=0.025  Sum_probs=68.9

Q ss_pred             cccccEEEeecCCCCCCCC--c--CCCcccceEeeeCCCCCCc-C-----CCCCCccCceeeeeCCCCCcccC--Ccccc
Q psy13376         72 YKLIKAVNLRIKTLRKIEN--L--WMMENLVELDLSMNHIGVI-E-----NLDQLVCLEKLDLGYNRIEQIQG--LDTLV  139 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~--l--~~l~~L~~L~Ls~N~l~~l-~-----~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~  139 (417)
                      +++|++|++++|.++...+  +  ..+++|++|++++|.++.. +     .+..+++|++|++++|.++.++.  +..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            4456666666666654322  3  5556666666666665532 1     12345566666666666655542  55566


Q ss_pred             ccceeEeecCCCCC---cC---CCCCCCCCcEEeccCCccCcchhhh--hhhCCCCcCEEeccCCCCCCC
Q psy13376        140 NLKVLNLKMNRIET---IE---GLDHLEKLELFNIAANRIQSLASLV--YLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       140 ~L~~L~Ls~N~i~~---l~---~l~~l~~L~~L~Ls~N~i~~l~~~~--~l~~l~~L~~L~L~~N~l~~~  201 (417)
                      +|++|+|++|++..   ++   .+..+++|++|++++|+++.++...  .+..+++|++|++++|.++..
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence            66666666665543   21   1245555666666666655443311  124555555666666555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.58  E-value=1.6e-15  Score=158.64  Aligned_cols=148  Identities=22%  Similarity=0.262  Sum_probs=125.8

Q ss_pred             cccccccCCcchhhhh----cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCC
Q psy13376         56 LSLLQESTNLAEKLQI----YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYN  127 (417)
Q Consensus        56 ~~l~~~~n~i~~l~~l----l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N  127 (417)
                      ..|++++|+|+.+..-    +++|++|+|++|+|+.+++  |.++++|++|+|++|+|+.++.  |.++++|++|++++|
T Consensus        55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N  134 (635)
T 4g8a_A           55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  134 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred             CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence            4567999999998753    8999999999999999865  8999999999999999999874  899999999999999


Q ss_pred             CCCcccC--CccccccceeEeecCCCCCcC---CCCCCCCCcEEeccCCccCcchh--hhhhhCCC-CcCEEeccCCCCC
Q psy13376        128 RIEQIQG--LDTLVNLKVLNLKMNRIETIE---GLDHLEKLELFNIAANRIQSLAS--LVYLRRFK-HLGRLNIERNPVC  199 (417)
Q Consensus       128 ~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~--~~~l~~l~-~L~~L~L~~N~l~  199 (417)
                      +++.++.  |+.+++|++|++++|.++.++   .+..+++|++|++++|+++.++.  +..+..++ ....++++.|++.
T Consensus       135 ~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  214 (635)
T ss_dssp             CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence            9999985  899999999999999998763   47889999999999999998754  22233333 2457889999987


Q ss_pred             CCCC
Q psy13376        200 DKEN  203 (417)
Q Consensus       200 ~~~~  203 (417)
                      .++.
T Consensus       215 ~i~~  218 (635)
T 4g8a_A          215 FIQP  218 (635)
T ss_dssp             EECT
T ss_pred             ccCc
Confidence            7654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=1.9e-14  Score=126.67  Aligned_cols=127  Identities=22%  Similarity=0.374  Sum_probs=104.8

Q ss_pred             ccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCC
Q psy13376         75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR  150 (417)
Q Consensus        75 L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~  150 (417)
                      .+.+++++|+++.++. ...++|+.|++++|.++.++.  +..+++|++|++++|.++.++.  +..+++|++|++++|.
T Consensus         9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            4678888888888874 233688999999999988764  7888999999999999988875  7888999999999999


Q ss_pred             CCCcCC--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        151 IETIEG--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       151 i~~l~~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      |+.++.  +..+++|++|++++|.++.++. ..+..+++|++|++++|++....+
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccCc
Confidence            988863  6788999999999999988876 456788899999999998876543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.57  E-value=1.4e-15  Score=146.73  Aligned_cols=164  Identities=18%  Similarity=0.212  Sum_probs=117.2

Q ss_pred             cccccccCCcch---hhh-h--cccccEEEeec-CCCCC-CCC-cCCCcccceEeeeCCCCC-CcCC-CCCCccCceeee
Q psy13376         56 LSLLQESTNLAE---KLQ-I--YKLIKAVNLRI-KTLRK-IEN-LWMMENLVELDLSMNHIG-VIEN-LDQLVCLEKLDL  124 (417)
Q Consensus        56 ~~l~~~~n~i~~---l~~-l--l~~L~~L~Ls~-N~i~~-i~~-l~~l~~L~~L~Ls~N~l~-~l~~-l~~l~~L~~L~L  124 (417)
                      ..+.++.+.+..   ++. +  +++|++|++++ |.+.. ++. +..+++|++|++++|.++ .+|. +..+++|++|++
T Consensus        53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  132 (313)
T 1ogq_A           53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF  132 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred             EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence            445677777763   332 2  78888888884 77764 443 788888888888888887 4553 788888888888


Q ss_pred             eCCCCC-cccC-CccccccceeEeecCCCC-CcC-CCCCCC-CCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCC
Q psy13376        125 GYNRIE-QIQG-LDTLVNLKVLNLKMNRIE-TIE-GLDHLE-KLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVC  199 (417)
Q Consensus       125 s~N~l~-~l~~-~~~l~~L~~L~Ls~N~i~-~l~-~l~~l~-~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~  199 (417)
                      ++|.++ .+|. +..+++|++|++++|.++ .+| .+..++ +|++|++++|.++...+ ..+..++ |+.|++++|.++
T Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~-~~~~~l~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC-GGGGGCC-CSEEECCSSEEE
T ss_pred             CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC-hHHhCCc-ccEEECcCCccc
Confidence            888887 4554 778888888888888887 444 466776 88888888888874332 3455665 888888888777


Q ss_pred             CCCCccHHHHhcCCCcccccCcccC
Q psy13376        200 DKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       200 ~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      ...+   ..+..+++|+.|+++.+.
T Consensus       211 ~~~~---~~~~~l~~L~~L~L~~N~  232 (313)
T 1ogq_A          211 GDAS---VLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             ECCG---GGCCTTSCCSEEECCSSE
T ss_pred             CcCC---HHHhcCCCCCEEECCCCc
Confidence            5543   345667788888777664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.56  E-value=5.5e-15  Score=159.47  Aligned_cols=101  Identities=24%  Similarity=0.332  Sum_probs=42.8

Q ss_pred             cccccEEEeecCCCCCC-CC-cCCCcccceEeeeCCCCCC-cCC-CCCCccCceeeeeCCCCC-cccC-CccccccceeE
Q psy13376         72 YKLIKAVNLRIKTLRKI-EN-LWMMENLVELDLSMNHIGV-IEN-LDQLVCLEKLDLGYNRIE-QIQG-LDTLVNLKVLN  145 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i-~~-l~~l~~L~~L~Ls~N~l~~-l~~-l~~l~~L~~L~Ls~N~l~-~l~~-~~~l~~L~~L~  145 (417)
                      +++|+.|++++|.++.. +. +..+++|++|++++|.++. +|. +.++++|++|++++|+++ .+|. +..+++|++|+
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  520 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK  520 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence            44444444444444422 21 4444444444444444442 221 444444444444444444 2232 44444444444


Q ss_pred             eecCCCCC-cC-CCCCCCCCcEEeccCCc
Q psy13376        146 LKMNRIET-IE-GLDHLEKLELFNIAANR  172 (417)
Q Consensus       146 Ls~N~i~~-l~-~l~~l~~L~~L~Ls~N~  172 (417)
                      +++|+++. +| .+..+++|++|++++|.
T Consensus       521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          521 LSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             CCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             CCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            44444442 22 23334444444444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.55  E-value=1.2e-14  Score=158.46  Aligned_cols=145  Identities=20%  Similarity=0.269  Sum_probs=94.2

Q ss_pred             ccccCCcchhhhhcccccEEEeecCCCCCCC--CcCCCcccceEeeeCCC-CCCcC--CCCCCccCceeeeeCCCCCccc
Q psy13376         59 LQESTNLAEKLQIYKLIKAVNLRIKTLRKIE--NLWMMENLVELDLSMNH-IGVIE--NLDQLVCLEKLDLGYNRIEQIQ  133 (417)
Q Consensus        59 ~~~~n~i~~l~~ll~~L~~L~Ls~N~i~~i~--~l~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~Ls~N~l~~l~  133 (417)
                      ..+.++++.++.+.+++++|++++|.|+.+.  .|..+++|++|++++|. +..++  .|.++++|++|+|++|.++.+.
T Consensus        10 dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~   89 (844)
T 3j0a_A           10 FYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH   89 (844)
T ss_dssp             EESCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred             EccCCCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence            3444555555555667777777777777653  26777777777777773 33442  2677777777777777777663


Q ss_pred             -C-CccccccceeEeecCCCCC-cC-C--CCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        134 -G-LDTLVNLKVLNLKMNRIET-IE-G--LDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       134 -~-~~~l~~L~~L~Ls~N~i~~-l~-~--l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                       . |..+++|++|+|++|.++. ++ .  +..+++|++|++++|.++.++....+..+++|+.|++++|.++....
T Consensus        90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence             2 7777777777777777765 22 2  66777777777777777665432356677777777777777766543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.55  E-value=1.7e-14  Score=149.89  Aligned_cols=162  Identities=19%  Similarity=0.160  Sum_probs=129.0

Q ss_pred             ccccccCCcchhhh--hcccccEEEeecCCCCCC-C-CcCCCcccceEeeeCCCCCCcC----CCCCCccCceeeeeCCC
Q psy13376         57 SLLQESTNLAEKLQ--IYKLIKAVNLRIKTLRKI-E-NLWMMENLVELDLSMNHIGVIE----NLDQLVCLEKLDLGYNR  128 (417)
Q Consensus        57 ~l~~~~n~i~~l~~--ll~~L~~L~Ls~N~i~~i-~-~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~  128 (417)
                      .+.++.|.+..+..  .+++|+.|++++|.++.. + .+..+++|++|++++|+++.++    .+..+++|++|++++|.
T Consensus       335 ~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred             EEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence            34455666655543  278899999999999874 3 3888999999999999998765    27888999999999999


Q ss_pred             CCc-ccC--CccccccceeEeecCCCCCcCCCCCC-CCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCc
Q psy13376        129 IEQ-IQG--LDTLVNLKVLNLKMNRIETIEGLDHL-EKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENV  204 (417)
Q Consensus       129 l~~-l~~--~~~l~~L~~L~Ls~N~i~~l~~l~~l-~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~  204 (417)
                      ++. +|.  +..+++|++|++++|+++... +..+ ++|++|++++|+|+.+|.  .+..+++|+.|++++|+++.+|..
T Consensus       415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l~~~  491 (562)
T 3a79_B          415 LNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIMSIPK--DVTHLQALQELNVASNQLKSVPDG  491 (562)
T ss_dssp             CBSCCSSCCCCCCTTCCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCCCCCT--TTTSSCCCSEEECCSSCCCCCCTT
T ss_pred             CCCccChhhhcCcccCCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCcccCh--hhcCCCCCCEEECCCCCCCCCCHH
Confidence            987 774  788899999999999986532 2233 689999999999998876  334899999999999999988872


Q ss_pred             cHHHHhcCCCcccccCcccC
Q psy13376        205 DGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       205 ~~~~~~~l~~L~~Ld~~~~~  224 (417)
                         .+..+++|+.|+++.++
T Consensus       492 ---~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          492 ---VFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             ---STTTCTTCCCEECCSCC
T ss_pred             ---HHhcCCCCCEEEecCCC
Confidence               46788999999988765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=3.4e-14  Score=127.37  Aligned_cols=120  Identities=24%  Similarity=0.295  Sum_probs=108.0

Q ss_pred             ccccccCCcchhhhh-cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcc
Q psy13376         57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI  132 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l  132 (417)
                      .+..+.+++..++.. .++++.|++++|.|+.++. +..+++|+.|++++|.|+.++.  |.++++|++|+|++|.|+.+
T Consensus        14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i   93 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI   93 (193)
T ss_dssp             EEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             EEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe
Confidence            346777888887765 7899999999999999975 8999999999999999999874  99999999999999999999


Q ss_pred             cC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcc
Q psy13376        133 QG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSL  176 (417)
Q Consensus       133 ~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l  176 (417)
                      +.  |..+++|++|+|++|.|+.++  .+..+++|++|++++|.+...
T Consensus        94 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            85  999999999999999999997  388999999999999998753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.52  E-value=1e-14  Score=149.87  Aligned_cols=137  Identities=18%  Similarity=0.241  Sum_probs=116.2

Q ss_pred             ccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCc
Q psy13376         57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQ  131 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~  131 (417)
                      .++++.|+++.++.- .+++++|++++|.++.+++  +..+++|++|++++|+++.++  .|.++++|++|++++|+++.
T Consensus         4 ~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~   83 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK   83 (520)
T ss_dssp             EEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE
T ss_pred             eEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee
Confidence            456778888877765 7899999999999998864  889999999999999999873  48899999999999999999


Q ss_pred             ccCCccccccceeEeecCCCCCc--C-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCc--CEEeccCCCC
Q psy13376        132 IQGLDTLVNLKVLNLKMNRIETI--E-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHL--GRLNIERNPV  198 (417)
Q Consensus       132 l~~~~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L--~~L~L~~N~l  198 (417)
                      +|.. .+++|++|++++|.++.+  | .++.+++|++|++++|.++..    .+..+++|  +.|++++|.+
T Consensus        84 lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           84 ISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             EECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTT
T ss_pred             cCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeecccc
Confidence            8876 889999999999999875  3 588999999999999998772    34566677  9999999988

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.50  E-value=6.8e-15  Score=145.68  Aligned_cols=165  Identities=14%  Similarity=0.126  Sum_probs=89.6

Q ss_pred             ccccccCCcch-----hhhh---cccccEEEeecCCCCCCCC------cCCC---------cccceEeeeCCCCC--CcC
Q psy13376         57 SLLQESTNLAE-----KLQI---YKLIKAVNLRIKTLRKIEN------LWMM---------ENLVELDLSMNHIG--VIE  111 (417)
Q Consensus        57 ~l~~~~n~i~~-----l~~l---l~~L~~L~Ls~N~i~~i~~------l~~l---------~~L~~L~Ls~N~l~--~l~  111 (417)
                      .|.++.|++..     +...   +++|++|++++|.++....      +..+         ++|++|++++|.++  .++
T Consensus        98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  177 (386)
T 2ca6_A           98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK  177 (386)
T ss_dssp             EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred             EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence            34455566554     2222   5666666666666653211      2222         56666666666665  222


Q ss_pred             ----CCCCCccCceeeeeCCCCC------ccc-CCccccccceeEeecCCCC-----CcC-CCCCCCCCcEEeccCCccC
Q psy13376        112 ----NLDQLVCLEKLDLGYNRIE------QIQ-GLDTLVNLKVLNLKMNRIE-----TIE-GLDHLEKLELFNIAANRIQ  174 (417)
Q Consensus       112 ----~l~~l~~L~~L~Ls~N~l~------~l~-~~~~l~~L~~L~Ls~N~i~-----~l~-~l~~l~~L~~L~Ls~N~i~  174 (417)
                          .+..+++|++|++++|.++      -++ .+..+++|++|+|++|.++     .++ .+..+++|++|++++|.|+
T Consensus       178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence                2445666666666666665      233 3556666666666666663     222 3556666666666666666


Q ss_pred             cchhh---hhhh--CCCCcCEEeccCCCCCC-----CCCccHHHHhcCCCcccccCcccC
Q psy13376        175 SLASL---VYLR--RFKHLGRLNIERNPVCD-----KENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       175 ~l~~~---~~l~--~l~~L~~L~L~~N~l~~-----~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      .....   ..+.  .+++|+.|++++|+++.     ++.   .....+++|+.|+++.+.
T Consensus       258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~---~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT---VIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH---HHHHHCTTCCEEECTTSB
T ss_pred             hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH---HHHhcCCCceEEEccCCc
Confidence            54211   1222  25666666666666655     222   222446666666665544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.50  E-value=3.7e-14  Score=138.79  Aligned_cols=173  Identities=18%  Similarity=0.167  Sum_probs=74.4

Q ss_pred             ccccc-ccceeeccccccCCCCch--hhhHHHHHhcCC---CC---CChhhhhccccccccccccccccCCcchhhhh--
Q psy13376          3 IPTTV-DRIKKIGLIKDRAGDEST--LKNLAQVLQNAP---AI---INEDLLSKKGVISENLLSLLQESTNLAEKLQI--   71 (417)
Q Consensus         3 ip~~~-~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~---~~---~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l--   71 (417)
                      ||..+ +++++++++.|+|+.+++  +.++.+|..+..   .+   +....+.++   ......+....|++..+..-  
T Consensus        24 iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L---~~l~~~l~~~~N~l~~l~~~~f  100 (350)
T 4ay9_X           24 IPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL---PKLHEIRIEKANNLLYINPEAF  100 (350)
T ss_dssp             CCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC---TTCCEEEEEEETTCCEECTTSB
T ss_pred             cCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc---hhhhhhhcccCCcccccCchhh
Confidence            45444 467788888888776653  444433333220   00   011111111   00000112333444444221  


Q ss_pred             --cccccEEEeecCCCCCCCC--cCCCcccceEeeeC-CCCCCcCC--CCCCc-cCceeeeeCCCCCcccC-Cccccccc
Q psy13376         72 --YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSM-NHIGVIEN--LDQLV-CLEKLDLGYNRIEQIQG-LDTLVNLK  142 (417)
Q Consensus        72 --l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~-~L~~L~Ls~N~l~~l~~-~~~l~~L~  142 (417)
                        +++|+.|++++|+++.++.  +....++..|++.+ +.++.++.  |..+. .++.|++++|+|+.++. .....+|+
T Consensus       101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~  180 (350)
T 4ay9_X          101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD  180 (350)
T ss_dssp             CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEE
T ss_pred             hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchh
Confidence              4445555555555554443  22333344444433 34444432  33332 34455555555555543 22333455


Q ss_pred             eeEee-cCCCCCcC--CCCCCCCCcEEeccCCccCcchh
Q psy13376        143 VLNLK-MNRIETIE--GLDHLEKLELFNIAANRIQSLAS  178 (417)
Q Consensus       143 ~L~Ls-~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~  178 (417)
                      +|+++ +|.++.++  .|..+++|++|++++|+|+.+|.
T Consensus       181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             EEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             HHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence            55554 24444443  24455555555555555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.50  E-value=8.7e-14  Score=124.43  Aligned_cols=122  Identities=26%  Similarity=0.334  Sum_probs=107.8

Q ss_pred             ccccccCCcchhhhh-cccccEEEeecCCCCCCCC---cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCC
Q psy13376         57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN---LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIE  130 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~---l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~  130 (417)
                      .+..+.+++..++.. ..+++.|++++|.|+.++.   +..+++|++|++++|.|+.+.  .|.++++|++|+|++|+|+
T Consensus        12 ~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~   91 (192)
T 1w8a_A           12 TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK   91 (192)
T ss_dssp             EEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred             EEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC
Confidence            456777888877765 6799999999999999864   889999999999999999884  3999999999999999999


Q ss_pred             cccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchh
Q psy13376        131 QIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLAS  178 (417)
Q Consensus       131 ~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~  178 (417)
                      .++.  |..+++|++|+|++|+|+.+.  .+..+++|++|++++|.++....
T Consensus        92 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            8875  889999999999999999873  58899999999999999985433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.50  E-value=5.1e-16  Score=156.84  Aligned_cols=151  Identities=23%  Similarity=0.178  Sum_probs=78.9

Q ss_pred             cccEEEeecCCCCCC-----C-CcCCCcccceEeeeCCCCCCcC--C-----CCCCccCceeeeeCCCCCccc-----C-
Q psy13376         74 LIKAVNLRIKTLRKI-----E-NLWMMENLVELDLSMNHIGVIE--N-----LDQLVCLEKLDLGYNRIEQIQ-----G-  134 (417)
Q Consensus        74 ~L~~L~Ls~N~i~~i-----~-~l~~l~~L~~L~Ls~N~l~~l~--~-----l~~l~~L~~L~Ls~N~l~~l~-----~-  134 (417)
                      +|++|++++|.++..     + .+..+++|++|++++|.++...  .     ....++|++|++++|.++...     . 
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            466666666666642     1 2556666666666666665321  1     222445666666666665422     1 


Q ss_pred             CccccccceeEeecCCCCCcC--CC-----CCCCCCcEEeccCCccCcchh---hhhhhCCCCcCEEeccCCCCCCCCCc
Q psy13376        135 LDTLVNLKVLNLKMNRIETIE--GL-----DHLEKLELFNIAANRIQSLAS---LVYLRRFKHLGRLNIERNPVCDKENV  204 (417)
Q Consensus       135 ~~~l~~L~~L~Ls~N~i~~l~--~l-----~~l~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L~~N~l~~~~~~  204 (417)
                      +..+++|++|++++|.++...  .+     ...++|++|++++|.++....   ...+..+++|++|++++|++.+....
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            445566666666666655431  11     124466666666666665321   12344566666666666665442110


Q ss_pred             c--HHHHhcCCCcccccCcccC
Q psy13376        205 D--GFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       205 ~--~~~~~~l~~L~~Ld~~~~~  224 (417)
                      .  ......+++|+.|+++.+.
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~  267 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECG  267 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHhcCCCCceEEECcCCC
Confidence            0  0111235666666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=1.4e-13  Score=121.19  Aligned_cols=121  Identities=22%  Similarity=0.311  Sum_probs=107.4

Q ss_pred             ccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCc
Q psy13376         57 SLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQ  131 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~  131 (417)
                      .+..+.+++..++.. .++++.|++++|.++.++.  +..+++|++|++++|.++.++.  +..+++|++|++++|.++.
T Consensus        11 ~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~   90 (177)
T 2o6r_A           11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS   90 (177)
T ss_dssp             EEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc
Confidence            345677778777655 8899999999999999875  7899999999999999999875  7899999999999999999


Q ss_pred             ccC--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCccCcch
Q psy13376        132 IQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANRIQSLA  177 (417)
Q Consensus       132 l~~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~  177 (417)
                      ++.  +..+++|++|++++|.++.++.  +..+++|++|++++|.+....
T Consensus        91 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            886  7899999999999999999874  688999999999999988643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.49  E-value=7.7e-14  Score=144.98  Aligned_cols=144  Identities=22%  Similarity=0.291  Sum_probs=110.4

Q ss_pred             cccccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCC
Q psy13376         56 LSLLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIE  130 (417)
Q Consensus        56 ~~l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~  130 (417)
                      ..++.+.++++.++.. .+++++|++++|.|+.++.  |..+++|++|++++|.++.++  .|.++++|++|++++|.++
T Consensus        34 ~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  113 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ  113 (562)
T ss_dssp             CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence            3456777888877765 7788888888888888863  888888888888888888774  3888888888888888888


Q ss_pred             cccCCccccccceeEeecCCCCCcC---CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCC--CCCC
Q psy13376        131 QIQGLDTLVNLKVLNLKMNRIETIE---GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPV--CDKE  202 (417)
Q Consensus       131 ~l~~~~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l--~~~~  202 (417)
                      .+|.. .+++|++|++++|+++.++   .++.+++|++|++++|.++.. .+..+..+ +|+.|++++|.+  +...
T Consensus       114 ~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L-~L~~L~L~~n~l~~~~~~  187 (562)
T 3a79_B          114 NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-DLLPVAHL-HLSCILLDLVSYHIKGGE  187 (562)
T ss_dssp             EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-TTGGGTTS-CEEEEEEEESSCCCCSSS
T ss_pred             ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-chhhhhhc-eeeEEEeecccccccccC
Confidence            88766 7888888888888888764   478888888888888888763 22233333 348888888888  5443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.48  E-value=7.6e-15  Score=145.33  Aligned_cols=165  Identities=16%  Similarity=0.123  Sum_probs=128.6

Q ss_pred             cccccccCCcchhhhh--------c---------ccccEEEeecCCCCC--CC----CcCCCcccceEeeeCCCCC----
Q psy13376         56 LSLLQESTNLAEKLQI--------Y---------KLIKAVNLRIKTLRK--IE----NLWMMENLVELDLSMNHIG----  108 (417)
Q Consensus        56 ~~l~~~~n~i~~l~~l--------l---------~~L~~L~Ls~N~i~~--i~----~l~~l~~L~~L~Ls~N~l~----  108 (417)
                      ..|.++.|.+......        +         ++|++|++++|.++.  ++    .+..+++|++|++++|.++    
T Consensus       125 ~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~  204 (386)
T 2ca6_A          125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI  204 (386)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred             CEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHH
Confidence            3556888888643321        2         899999999999973  33    2667899999999999998    


Q ss_pred             --CcC-CCCCCccCceeeeeCCCCC-----cccC-CccccccceeEeecCCCCCc-----C-CC--CCCCCCcEEeccCC
Q psy13376        109 --VIE-NLDQLVCLEKLDLGYNRIE-----QIQG-LDTLVNLKVLNLKMNRIETI-----E-GL--DHLEKLELFNIAAN  171 (417)
Q Consensus       109 --~l~-~l~~l~~L~~L~Ls~N~l~-----~l~~-~~~l~~L~~L~Ls~N~i~~l-----~-~l--~~l~~L~~L~Ls~N  171 (417)
                        .++ .+..+++|++|+|++|.++     .++. +..+++|++|+|++|.|+..     + .+  +.+++|++|++++|
T Consensus       205 ~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n  284 (386)
T 2ca6_A          205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN  284 (386)
T ss_dssp             HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred             HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence              244 6889999999999999994     4554 88899999999999999875     2 34  45899999999999


Q ss_pred             ccCc-----chhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376        172 RIQS-----LASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH  221 (417)
Q Consensus       172 ~i~~-----l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~  221 (417)
                      .|+.     ++. ....++++|+.|++++|+++...++.......++.++..++.
T Consensus       285 ~i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~  338 (386)
T 2ca6_A          285 EIELDAVRTLKT-VIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD  338 (386)
T ss_dssp             CCBHHHHHHHHH-HHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred             cCCHHHHHHHHH-HHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence            9998     544 233668999999999999998876545555556665544443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=6.7e-14  Score=145.80  Aligned_cols=122  Identities=25%  Similarity=0.324  Sum_probs=110.3

Q ss_pred             cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccCCccccccceeEeecCC
Q psy13376         72 YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNR  150 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~  150 (417)
                      ...|+.|++++|.|+.+|.+..+++|+.|+|++|.|+.+|. ++.+++|+.|+|++|.|+.+|.+..+++|+.|+|++|+
T Consensus       440 ~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          440 YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR  519 (567)
T ss_dssp             HTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             ccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC
Confidence            34689999999999999999999999999999999999985 99999999999999999999999999999999999999


Q ss_pred             CCCc--C-CCCCCCCCcEEeccCCccCcchhh--hhhhCCCCcCEEec
Q psy13376        151 IETI--E-GLDHLEKLELFNIAANRIQSLASL--VYLRRFKHLGRLNI  193 (417)
Q Consensus       151 i~~l--~-~l~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L  193 (417)
                      |+.+  | .+..+++|+.|++++|.++..++.  ..+..+|+|+.|++
T Consensus       520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9998  4 589999999999999999987652  23456899999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=1.3e-15  Score=136.83  Aligned_cols=139  Identities=32%  Similarity=0.389  Sum_probs=118.9

Q ss_pred             CCcchhhhh---cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccCCccc
Q psy13376         63 TNLAEKLQI---YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQGLDTL  138 (417)
Q Consensus        63 n~i~~l~~l---l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~~~~l  138 (417)
                      +.+..++..   +++|+.|++++|.++.++.+..+++|++|++++|.++.++. +..+++|++|++++|.++.++.+..+
T Consensus        35 ~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l  114 (198)
T 1ds9_A           35 PPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKL  114 (198)
T ss_dssp             TTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHH
T ss_pred             CcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccC
Confidence            344444433   89999999999999999988999999999999999999987 66779999999999999999888899


Q ss_pred             cccceeEeecCCCCCcC---CCCCCCCCcEEeccCCccCcchh---------hhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        139 VNLKVLNLKMNRIETIE---GLDHLEKLELFNIAANRIQSLAS---------LVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       139 ~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~---------~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      ++|++|++++|.++.++   .+..+++|++|++++|.++...+         ...+..+++|+.|+  +|+++....
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~e~  189 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVDER  189 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTTTT
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHHHH
Confidence            99999999999999875   48899999999999999976532         12367899999987  888877554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.47  E-value=1.2e-15  Score=154.15  Aligned_cols=143  Identities=23%  Similarity=0.273  Sum_probs=74.4

Q ss_pred             cccccCCcchhhhh-----cccccEEEeecCCCCCC-----CC-cCCCcccceEeeeCCCCCCcC--C-CCCCc----cC
Q psy13376         58 LLQESTNLAEKLQI-----YKLIKAVNLRIKTLRKI-----EN-LWMMENLVELDLSMNHIGVIE--N-LDQLV----CL  119 (417)
Q Consensus        58 l~~~~n~i~~l~~l-----l~~L~~L~Ls~N~i~~i-----~~-l~~l~~L~~L~Ls~N~l~~l~--~-l~~l~----~L  119 (417)
                      ++++.+++......     +++|++|++++|.++..     +. +..+++|++|++++|.++...  . +..++    +|
T Consensus         8 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L   87 (461)
T 1z7x_W            8 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI   87 (461)
T ss_dssp             EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCC
T ss_pred             hhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCce
Confidence            34555555443321     56666666666666532     22 445566666666666665421  1 11222    46


Q ss_pred             ceeeeeCCCCCc-----ccC-CccccccceeEeecCCCCCcC------C-CCCCCCCcEEeccCCccCcchh---hhhhh
Q psy13376        120 EKLDLGYNRIEQ-----IQG-LDTLVNLKVLNLKMNRIETIE------G-LDHLEKLELFNIAANRIQSLAS---LVYLR  183 (417)
Q Consensus       120 ~~L~Ls~N~l~~-----l~~-~~~l~~L~~L~Ls~N~i~~l~------~-l~~l~~L~~L~Ls~N~i~~l~~---~~~l~  183 (417)
                      ++|++++|.++.     ++. +..+++|++|++++|.++...      . ....++|++|++++|.++....   ...+.
T Consensus        88 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  167 (461)
T 1z7x_W           88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR  167 (461)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred             eEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHh
Confidence            666666666653     222 556666666666666655321      0 2234456666666666654321   12334


Q ss_pred             CCCCcCEEeccCCCCCC
Q psy13376        184 RFKHLGRLNIERNPVCD  200 (417)
Q Consensus       184 ~l~~L~~L~L~~N~l~~  200 (417)
                      .+++|++|++++|++.+
T Consensus       168 ~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          168 AKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HCTTCCEEECCSSBCHH
T ss_pred             hCCCCCEEECcCCCcch
Confidence            55666666666666543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.45  E-value=2.8e-15  Score=147.34  Aligned_cols=166  Identities=17%  Similarity=0.227  Sum_probs=105.3

Q ss_pred             cccCCcchhh-hh---cccccEEEeecCCCCCCCC------cCCCc-ccceEeeeCCCCCCcC--CCCCC-----ccCce
Q psy13376         60 QESTNLAEKL-QI---YKLIKAVNLRIKTLRKIEN------LWMME-NLVELDLSMNHIGVIE--NLDQL-----VCLEK  121 (417)
Q Consensus        60 ~~~n~i~~l~-~l---l~~L~~L~Ls~N~i~~i~~------l~~l~-~L~~L~Ls~N~l~~l~--~l~~l-----~~L~~  121 (417)
                      ++.|.+.... ..   .++|++|++++|.++..+.      +..++ +|++|++++|.++...  .+..+     ++|++
T Consensus         5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~   84 (362)
T 3goz_A            5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS   84 (362)
T ss_dssp             CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence            4445555332 22   4558888888888877642      55666 7888888888877653  23333     77888


Q ss_pred             eeeeCCCCCcccC------Cccc-cccceeEeecCCCCCcCC------CCC-CCCCcEEeccCCccCcchh---hhhhhC
Q psy13376        122 LDLGYNRIEQIQG------LDTL-VNLKVLNLKMNRIETIEG------LDH-LEKLELFNIAANRIQSLAS---LVYLRR  184 (417)
Q Consensus       122 L~Ls~N~l~~l~~------~~~l-~~L~~L~Ls~N~i~~l~~------l~~-l~~L~~L~Ls~N~i~~l~~---~~~l~~  184 (417)
                      |++++|.++..+.      +..+ ++|++|++++|.++..+.      +.. .++|++|++++|.+++...   ...+..
T Consensus        85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~  164 (362)
T 3goz_A           85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA  164 (362)
T ss_dssp             EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT
T ss_pred             EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc
Confidence            8888888775542      3334 678888888888776641      334 3578888888888774322   123345


Q ss_pred             CC-CcCEEeccCCCCCCCCCccH-HHHhcC-CCcccccCcccCH
Q psy13376        185 FK-HLGRLNIERNPVCDKENVDG-FAIAMV-PQLQCYNNHIILE  225 (417)
Q Consensus       185 l~-~L~~L~L~~N~l~~~~~~~~-~~~~~l-~~L~~Ld~~~~~~  225 (417)
                      ++ +|++|++++|.++....... ..+..+ ++|+.||++.+..
T Consensus       165 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i  208 (362)
T 3goz_A          165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL  208 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence            54 78888888888776553211 134445 4788888777764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.43  E-value=5.1e-14  Score=150.91  Aligned_cols=107  Identities=21%  Similarity=0.306  Sum_probs=93.0

Q ss_pred             cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC-CccccccceeEeec
Q psy13376         72 YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKM  148 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~  148 (417)
                      ++.|+.|+|++|.+..++. +..+++|++|+|++|.|+.+|. |..+++|++|+|++|.|+.+|. +..+++|++|+|++
T Consensus       223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~  302 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD  302 (727)
T ss_dssp             CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS
T ss_pred             CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC
Confidence            7889999999999998875 6688999999999999998875 8889999999999999998886 88899999999999


Q ss_pred             CCCCCcC-CCCCCCCCcEEeccCCccCcchh
Q psy13376        149 NRIETIE-GLDHLEKLELFNIAANRIQSLAS  178 (417)
Q Consensus       149 N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~  178 (417)
                      |.|+.+| .|..+++|++|+|++|.|+...+
T Consensus       303 N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          303 NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             SCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred             CCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence            9999887 58889999999999999886443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.42  E-value=9e-14  Score=136.57  Aligned_cols=201  Identities=16%  Similarity=0.133  Sum_probs=124.3

Q ss_pred             ccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhh--h--c-----ccccEE
Q psy13376          8 DRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQ--I--Y-----KLIKAV   78 (417)
Q Consensus         8 ~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~--l--l-----~~L~~L   78 (417)
                      .+++.++++.|.+++.+.-.-+..+.....         ++       ..+.++.|++.....  +  +     ++|++|
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~---------~L-------~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L   85 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPA---------SV-------TSLNLSGNSLGFKNSDELVQILAAIPANVTSL   85 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCT---------TC-------CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCC---------ce-------eEEECcCCCCCHHHHHHHHHHHhccCCCccEE
Confidence            347888888888887764322211111110         11       234566666665322  2  2     778888


Q ss_pred             EeecCCCCCCCC------cCCC-cccceEeeeCCCCCCcCC------CCC-CccCceeeeeCCCCCccc-----C-Cccc
Q psy13376         79 NLRIKTLRKIEN------LWMM-ENLVELDLSMNHIGVIEN------LDQ-LVCLEKLDLGYNRIEQIQ-----G-LDTL  138 (417)
Q Consensus        79 ~Ls~N~i~~i~~------l~~l-~~L~~L~Ls~N~l~~l~~------l~~-l~~L~~L~Ls~N~l~~l~-----~-~~~l  138 (417)
                      ++++|.++....      +..+ ++|++|++++|.++..+.      +.. .++|++|++++|.++...     . +..+
T Consensus        86 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~  165 (362)
T 3goz_A           86 NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI  165 (362)
T ss_dssp             ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred             ECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcC
Confidence            888888876542      3344 788888888888876642      334 358888888888887432     1 3444


Q ss_pred             c-ccceeEeecCCCCCcC------CCCCC-CCCcEEeccCCccCcchhh---hhhhC-CCCcCEEeccCCCCCCCCCccH
Q psy13376        139 V-NLKVLNLKMNRIETIE------GLDHL-EKLELFNIAANRIQSLASL---VYLRR-FKHLGRLNIERNPVCDKENVDG  206 (417)
Q Consensus       139 ~-~L~~L~Ls~N~i~~l~------~l~~l-~~L~~L~Ls~N~i~~l~~~---~~l~~-l~~L~~L~L~~N~l~~~~~~~~  206 (417)
                      + +|++|+|++|+++...      .+..+ ++|++|++++|.|++....   ..+.. .++|+.|++++|++++.+....
T Consensus       166 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  245 (362)
T 3goz_A          166 PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL  245 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred             CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence            4 7888888888887654      23445 4888888888888772210   12333 4578888888888877654111


Q ss_pred             -HHHhcCCCcccccCcccC
Q psy13376        207 -FAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       207 -~~~~~l~~L~~Ld~~~~~  224 (417)
                       ..+..+++|+.|+++.+.
T Consensus       246 ~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          246 KLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHhcCCCccEEEeccCC
Confidence             123556778877776653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.40  E-value=6e-13  Score=130.10  Aligned_cols=160  Identities=17%  Similarity=0.122  Sum_probs=82.4

Q ss_pred             cccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCC-cCC--CCCCccCce-eeeeCCCCCcc
Q psy13376         60 QESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGV-IEN--LDQLVCLEK-LDLGYNRIEQI  132 (417)
Q Consensus        60 ~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~-l~~--l~~l~~L~~-L~Ls~N~l~~l  132 (417)
                      .+.++++.++.- .++++.|+|++|+|+.++.  |.++++|++|+|++|.+.. ++.  |.+++++.+ +.+++|+++.+
T Consensus        16 C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l   95 (350)
T 4ay9_X           16 CQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI   95 (350)
T ss_dssp             EESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred             ecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence            344444444432 4555556666666655543  5555566666666655532 332  455555443 33445555555


Q ss_pred             cC--CccccccceeEeecCCCCCcCC---------------------------CCCC-CCCcEEeccCCccCcchhhhhh
Q psy13376        133 QG--LDTLVNLKVLNLKMNRIETIEG---------------------------LDHL-EKLELFNIAANRIQSLASLVYL  182 (417)
Q Consensus       133 ~~--~~~l~~L~~L~Ls~N~i~~l~~---------------------------l~~l-~~L~~L~Ls~N~i~~l~~~~~l  182 (417)
                      ++  |..+++|++|++++|+++.++.                           +..+ ..++.|++++|+|+.++. .. 
T Consensus        96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-~~-  173 (350)
T 4ay9_X           96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-SA-  173 (350)
T ss_dssp             CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-TS-
T ss_pred             CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh-hh-
Confidence            42  5555555555555555554432                           2232 245556666666665554 12 


Q ss_pred             hCCCCcCEEeccC-CCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        183 RRFKHLGRLNIER-NPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       183 ~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      ....+|+.+++.+ |.++.++.   .++..+++|+.||++.+.
T Consensus       174 f~~~~L~~l~l~~~n~l~~i~~---~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          174 FNGTQLDELNLSDNNNLEELPN---DVFHGASGPVILDISRTR  213 (350)
T ss_dssp             STTEEEEEEECTTCTTCCCCCT---TTTTTEECCSEEECTTSC
T ss_pred             ccccchhHHhhccCCcccCCCH---HHhccCcccchhhcCCCC
Confidence            2334566666653 55555554   234556666666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=1.5e-12  Score=114.67  Aligned_cols=102  Identities=21%  Similarity=0.319  Sum_probs=55.3

Q ss_pred             ceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCCc
Q psy13376         98 VELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAANR  172 (417)
Q Consensus        98 ~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N~  172 (417)
                      +.+++++|.++.+|. +.  ++|++|+|++|.|+.+++  |..+++|++|+|++|+|+.++.  |..+++|++|++++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            445555555555543 21  455555555555555532  5555555555555555555542  4555556666666665


Q ss_pred             cCcchhhhhhhCCCCcCEEeccCCCCCCCC
Q psy13376        173 IQSLASLVYLRRFKHLGRLNIERNPVCDKE  202 (417)
Q Consensus       173 i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~  202 (417)
                      |+.++. ..+..+++|++|++++|++...+
T Consensus        93 l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 LKSIPR-GAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCT-TTTTTCTTCSEEECCSSCBCTTB
T ss_pred             cceeCH-HHhccccCCCEEEeCCCCccccc
Confidence            555544 23455556666666666655544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.39  E-value=3.4e-13  Score=144.51  Aligned_cols=111  Identities=25%  Similarity=0.283  Sum_probs=100.6

Q ss_pred             cCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC-CccccccceeEeecCCCCCcC-CCCCCCCCcEEe
Q psy13376         91 LWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIE-GLDHLEKLELFN  167 (417)
Q Consensus        91 l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~  167 (417)
                      +..++.|+.|+|++|.+..++. +..+++|++|+|++|.|+.+|. |..+++|++|+|++|.|+.+| .+..+++|++|+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY  299 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred             hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence            7889999999999999999974 7799999999999999999986 999999999999999999997 689999999999


Q ss_pred             ccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        168 IAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       168 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      |++|.|+.+|.  .+..+++|+.|+|++|+++..++
T Consensus       300 L~~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          300 FFDNMVTTLPW--EFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             CCSSCCCCCCS--STTSCTTCCCEECTTSCCCSHHH
T ss_pred             CCCCCCCccCh--hhhcCCCccEEeCCCCccCCCCh
Confidence            99999999876  47999999999999999987543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=1.6e-12  Score=114.00  Aligned_cols=103  Identities=20%  Similarity=0.282  Sum_probs=57.0

Q ss_pred             cceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcCC--CCCCCCCcEEeccCC
Q psy13376         97 LVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIEG--LDHLEKLELFNIAAN  171 (417)
Q Consensus        97 L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~N  171 (417)
                      .+.+++++|.++.+|. +  .++|++|+|++|.|+.++.  |..+++|++|+|++|+|+.++.  |..+++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            3455555555555543 2  2455555555555555532  5555566666666666555542  455566666666666


Q ss_pred             ccCcchhhhhhhCCCCcCEEeccCCCCCCCC
Q psy13376        172 RIQSLASLVYLRRFKHLGRLNIERNPVCDKE  202 (417)
Q Consensus       172 ~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~  202 (417)
                      +|+.++. ..+..+++|+.|++++|++...+
T Consensus        89 ~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           89 QLKSIPR-GAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCCCCT-TTTTTCTTCCEEECCSSCBCTTB
T ss_pred             ccCEeCH-HHhcCCCCCCEEEeCCCCCCCCc
Confidence            6665544 33455566666666666665544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.37  E-value=9e-14  Score=134.49  Aligned_cols=164  Identities=16%  Similarity=0.194  Sum_probs=95.3

Q ss_pred             ccccccCCcch--hhhh---cccccEEEeecCCCCCC--CCcCCCcccceEeeeCC-CCCC--cCC-CCCCccCceeeee
Q psy13376         57 SLLQESTNLAE--KLQI---YKLIKAVNLRIKTLRKI--ENLWMMENLVELDLSMN-HIGV--IEN-LDQLVCLEKLDLG  125 (417)
Q Consensus        57 ~l~~~~n~i~~--l~~l---l~~L~~L~Ls~N~i~~i--~~l~~l~~L~~L~Ls~N-~l~~--l~~-l~~l~~L~~L~Ls  125 (417)
                      .+.++.|.+..  +...   +++|++|++++|.++..  ..+..+++|++|++++| .++.  ++. +..+++|++|+++
T Consensus        97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~  176 (336)
T 2ast_B           97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS  176 (336)
T ss_dssp             EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred             EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence            34455665543  3322   66777777777766532  12556677777777777 5653  333 5566777777777


Q ss_pred             CC-CCCc--ccC-Ccccc-ccceeEeecCC--CC--CcC-CCCCCCCCcEEeccCCc-cCcchhhhhhhCCCCcCEEecc
Q psy13376        126 YN-RIEQ--IQG-LDTLV-NLKVLNLKMNR--IE--TIE-GLDHLEKLELFNIAANR-IQSLASLVYLRRFKHLGRLNIE  194 (417)
Q Consensus       126 ~N-~l~~--l~~-~~~l~-~L~~L~Ls~N~--i~--~l~-~l~~l~~L~~L~Ls~N~-i~~l~~~~~l~~l~~L~~L~L~  194 (417)
                      +| .++.  ++. +..++ +|++|++++|.  ++  .++ .+..+++|++|++++|. +++.. +..+..+++|++|+++
T Consensus       177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~  255 (336)
T 2ast_B          177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLS  255 (336)
T ss_dssp             CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECT
T ss_pred             CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH-HHHHhCCCCCCEeeCC
Confidence            77 6664  333 55666 77777777773  33  222 24556677777777776 44322 2345666777777777


Q ss_pred             CCCCCCCCCccHHHHhcCCCcccccCccc
Q psy13376        195 RNPVCDKENVDGFAIAMVPQLQCYNNHII  223 (417)
Q Consensus       195 ~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~  223 (417)
                      +|.  .+.+.....+..+++|+.|+++.+
T Consensus       256 ~~~--~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          256 RCY--DIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TCT--TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCC--CCCHHHHHHHhcCCCCCEEeccCc
Confidence            775  111111123456777777776655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=2.7e-12  Score=112.98  Aligned_cols=101  Identities=26%  Similarity=0.326  Sum_probs=90.6

Q ss_pred             ccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecC
Q psy13376         75 IKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN  149 (417)
Q Consensus        75 L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N  149 (417)
                      -+.+++++|+++.+|. +.  ++|++|++++|.|+.+++  |.++++|++|+|++|+|+.++.  |..+++|++|+|++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3689999999999986 43  899999999999998853  8999999999999999999986  789999999999999


Q ss_pred             CCCCcCC--CCCCCCCcEEeccCCccCcch
Q psy13376        150 RIETIEG--LDHLEKLELFNIAANRIQSLA  177 (417)
Q Consensus       150 ~i~~l~~--l~~l~~L~~L~Ls~N~i~~l~  177 (417)
                      +|+.++.  +..+++|++|++++|.+...+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            9999973  889999999999999998654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.35  E-value=8.1e-14  Score=134.79  Aligned_cols=150  Identities=16%  Similarity=0.164  Sum_probs=77.4

Q ss_pred             cccccEEEeecCCCCC--CCC-cCCCcccceEeeeCCCCCCc-C-CCCCCccCceeeeeCC-CCCc--ccC-Cccccccc
Q psy13376         72 YKLIKAVNLRIKTLRK--IEN-LWMMENLVELDLSMNHIGVI-E-NLDQLVCLEKLDLGYN-RIEQ--IQG-LDTLVNLK  142 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~--i~~-l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N-~l~~--l~~-~~~l~~L~  142 (417)
                      +++|++|++++|.++.  ++. +..+++|++|++++|.++.. + .+..+++|++|++++| .++.  ++. +..+++|+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            4556666666665543  222 45556666666666655522 1 2455566666666666 4552  333 45556666


Q ss_pred             eeEeecC-CCCC--cC-CCCCCC-CCcEEeccCC--ccCcchhhhhhhCCCCcCEEeccCCC-CCCCCCccHHHHhcCCC
Q psy13376        143 VLNLKMN-RIET--IE-GLDHLE-KLELFNIAAN--RIQSLASLVYLRRFKHLGRLNIERNP-VCDKENVDGFAIAMVPQ  214 (417)
Q Consensus       143 ~L~Ls~N-~i~~--l~-~l~~l~-~L~~L~Ls~N--~i~~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~  214 (417)
                      +|++++| .++.  ++ .+..++ +|++|++++|  .+++-.-...+..+++|+.|++++|. +++...   ..+..+++
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~---~~l~~l~~  248 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF---QEFFQLNY  248 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG---GGGGGCTT
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH---HHHhCCCC
Confidence            6666666 5553  22 244555 6666666666  33321111234456666666666665 332211   13345566


Q ss_pred             cccccCcccC
Q psy13376        215 LQCYNNHIIL  224 (417)
Q Consensus       215 L~~Ld~~~~~  224 (417)
                      |+.|+++.+.
T Consensus       249 L~~L~l~~~~  258 (336)
T 2ast_B          249 LQHLSLSRCY  258 (336)
T ss_dssp             CCEEECTTCT
T ss_pred             CCEeeCCCCC
Confidence            6666665553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=4.2e-12  Score=111.23  Aligned_cols=101  Identities=26%  Similarity=0.342  Sum_probs=90.5

Q ss_pred             ccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecC
Q psy13376         75 IKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMN  149 (417)
Q Consensus        75 L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N  149 (417)
                      .+.+++++|.++.+|. +  .++|++|+|++|.|+.++.  |..+++|++|+|++|+|+.++.  |..+++|++|+|++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            5789999999999986 4  3889999999999999853  8999999999999999999986  789999999999999


Q ss_pred             CCCCcC--CCCCCCCCcEEeccCCccCcch
Q psy13376        150 RIETIE--GLDHLEKLELFNIAANRIQSLA  177 (417)
Q Consensus       150 ~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~  177 (417)
                      +|+.++  .+..+++|++|++++|.++...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            999996  3889999999999999987543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=6.6e-12  Score=121.58  Aligned_cols=98  Identities=12%  Similarity=0.097  Sum_probs=83.6

Q ss_pred             CccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCc-EEeccCCccCcchhhhhhhCCCCcCE
Q psy13376        116 LVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLE-LFNIAANRIQSLASLVYLRRFKHLGR  190 (417)
Q Consensus       116 l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~-~L~Ls~N~i~~l~~~~~l~~l~~L~~  190 (417)
                      +++|+.+++++|+++.++.  |.++++|+.+++.+| ++.++  .|.++++|+ .+++.+ .++.++. ..|..+++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-GAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT-TTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch-hhhhCCccCCE
Confidence            6789999999999999985  899999999999987 88886  589999999 999988 7888876 57889999999


Q ss_pred             EeccCCCCCCCCCccHHHHhcCCCccccc
Q psy13376        191 LNIERNPVCDKENVDGFAIAMVPQLQCYN  219 (417)
Q Consensus       191 L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld  219 (417)
                      +++++|.+..++.   ..+..+++|+.+.
T Consensus       302 l~l~~n~i~~I~~---~aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLGD---ELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEECT---TTTCTTCCCCEEE
T ss_pred             EEeCCCccCccch---hhhcCCcchhhhc
Confidence            9999999988876   4677788888764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.19  E-value=2.8e-11  Score=117.71  Aligned_cols=105  Identities=23%  Similarity=0.298  Sum_probs=79.3

Q ss_pred             EEEeecC-CCCCCCCcCCCcccceEeeeC-CCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCC
Q psy13376         77 AVNLRIK-TLRKIENLWMMENLVELDLSM-NHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR  150 (417)
Q Consensus        77 ~L~Ls~N-~i~~i~~l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~  150 (417)
                      .++++++ +++.+|.+..+++|+.|+|++ |.|+.++.  |.++++|+.|+|++|+|+.++.  |..+++|++|+|++|+
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            4577776 788887777778888888885 88887763  8888888888888888887764  7788888888888888


Q ss_pred             CCCcC--CCCCCCCCcEEeccCCccCcchhhhhh
Q psy13376        151 IETIE--GLDHLEKLELFNIAANRIQSLASLVYL  182 (417)
Q Consensus       151 i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l  182 (417)
                      |+.++  .+..++ |+.|++++|.+.....+..+
T Consensus        92 l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~  124 (347)
T 2ifg_A           92 LESLSWKTVQGLS-LQELVLSGNPLHCSCALRWL  124 (347)
T ss_dssp             CSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHH
T ss_pred             cceeCHHHcccCC-ceEEEeeCCCccCCCccHHH
Confidence            88876  244444 88888888888754443333

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.18  E-value=2.4e-11  Score=117.57  Aligned_cols=79  Identities=16%  Similarity=0.148  Sum_probs=60.9

Q ss_pred             ccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcC-EEeccCCCCCCCCCccHHHHhcCCC
Q psy13376        138 LVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLG-RLNIERNPVCDKENVDGFAIAMVPQ  214 (417)
Q Consensus       138 l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~~~~l~~  214 (417)
                      +++|+.+++++|.++.++  .|.++++|+.+++.+| ++.++. ..|..+++|+ .+++.+ .++.++.   ..+..|++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~~---~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAIEF---GAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-TCCEECT---TTTTTCTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-cceEEch---hhhhCCcc
Confidence            567888888888888886  4888888888888887 777776 5678888888 888877 6776665   46677888


Q ss_pred             cccccCcc
Q psy13376        215 LQCYNNHI  222 (417)
Q Consensus       215 L~~Ld~~~  222 (417)
                      |+.+++..
T Consensus       299 L~~l~l~~  306 (329)
T 3sb4_A          299 LRYVLATG  306 (329)
T ss_dssp             EEEEEECS
T ss_pred             CCEEEeCC
Confidence            88887643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=9.6e-11  Score=113.93  Aligned_cols=104  Identities=16%  Similarity=0.240  Sum_probs=92.4

Q ss_pred             ceEeeeCC-CCCCcCCCCCCccCceeeeeC-CCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCC
Q psy13376         98 VELDLSMN-HIGVIENLDQLVCLEKLDLGY-NRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAAN  171 (417)
Q Consensus        98 ~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~-N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N  171 (417)
                      ..++++++ .++.+|.+..+++|++|+|++ |.|+.++.  |..+++|++|+|++|+|+.++  .|..+++|++|+|++|
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            45788988 999998888999999999996 99999985  999999999999999999986  4799999999999999


Q ss_pred             ccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        172 RIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       172 ~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      +|+.++. ..+..++ |+.|+|.+|++...+.
T Consensus        91 ~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           91 ALESLSW-KTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CCSCCCS-TTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             ccceeCH-HHcccCC-ceEEEeeCCCccCCCc
Confidence            9999886 4555555 9999999999988765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.08  E-value=3.3e-12  Score=126.13  Aligned_cols=153  Identities=18%  Similarity=0.171  Sum_probs=71.7

Q ss_pred             cccccEEEeecCCCCCCCC------cC-CCcccceEeeeCCCCCCcC--C-CCCCccCceeeeeCCCCCcccC--C----
Q psy13376         72 YKLIKAVNLRIKTLRKIEN------LW-MMENLVELDLSMNHIGVIE--N-LDQLVCLEKLDLGYNRIEQIQG--L----  135 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~------l~-~l~~L~~L~Ls~N~l~~l~--~-l~~l~~L~~L~Ls~N~l~~l~~--~----  135 (417)
                      ++.++.|++++|.|+....      +. ..++|++|+|++|.++...  . ...+++|+.|+|++|.++....  +    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4555566666655554321      11 2245556666666554321  1 2234455566666665543321  1    


Q ss_pred             -ccccccceeEeecCCCCCcC------CCCCCCCCcEEeccCCccCcchh---hhhhhCCCCcCEEeccCCCCCCCCCcc
Q psy13376        136 -DTLVNLKVLNLKMNRIETIE------GLDHLEKLELFNIAANRIQSLAS---LVYLRRFKHLGRLNIERNPVCDKENVD  205 (417)
Q Consensus       136 -~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L~~N~l~~~~~~~  205 (417)
                       ...++|++|+|++|.|+...      .+..+++|++|+|++|.|++...   ...+...++|+.|+|++|.|++.....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             22345566666666554321      13445556666666665554221   112344455666666666555432100


Q ss_pred             -HHHHhcCCCcccccCcccC
Q psy13376        206 -GFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       206 -~~~~~~l~~L~~Ld~~~~~  224 (417)
                       ...+...++|+.||++.+.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHhCCCCCEEeccCCC
Confidence             1123344555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.01  E-value=3.5e-11  Score=118.78  Aligned_cols=147  Identities=20%  Similarity=0.172  Sum_probs=113.6

Q ss_pred             cccccccCCcchhhhh---------cccccEEEeecCCCCCCC--C-cCCCcccceEeeeCCCCCCcC--CC-----CCC
Q psy13376         56 LSLLQESTNLAEKLQI---------YKLIKAVNLRIKTLRKIE--N-LWMMENLVELDLSMNHIGVIE--NL-----DQL  116 (417)
Q Consensus        56 ~~l~~~~n~i~~l~~l---------l~~L~~L~Ls~N~i~~i~--~-l~~l~~L~~L~Ls~N~l~~l~--~l-----~~l  116 (417)
                      ..+.++.|.+......         .++|+.|+|++|.++...  . ...+++|+.|+|++|.++...  .+     ...
T Consensus        75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~  154 (372)
T 3un9_A           75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ  154 (372)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred             CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence            3567888888764432         268999999999987632  2 335678999999999998643  12     356


Q ss_pred             ccCceeeeeCCCCCccc-----C-CccccccceeEeecCCCCCcC------CCCCCCCCcEEeccCCccCcchhh---hh
Q psy13376        117 VCLEKLDLGYNRIEQIQ-----G-LDTLVNLKVLNLKMNRIETIE------GLDHLEKLELFNIAANRIQSLASL---VY  181 (417)
Q Consensus       117 ~~L~~L~Ls~N~l~~l~-----~-~~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~Ls~N~i~~l~~~---~~  181 (417)
                      ++|++|+|++|.|+...     . +..+++|++|+|++|.|+...      .+...++|++|++++|.|++....   ..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            88999999999997533     1 467889999999999998642      467788999999999999875431   23


Q ss_pred             hhCCCCcCEEeccCCCCCCCC
Q psy13376        182 LRRFKHLGRLNIERNPVCDKE  202 (417)
Q Consensus       182 l~~l~~L~~L~L~~N~l~~~~  202 (417)
                      +...++|++|+|++|+|++..
T Consensus       235 L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          235 AREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             HHHCSSCCEEECTTSSCCHHH
T ss_pred             HHhCCCCCEEeccCCCCCHHH
Confidence            556799999999999998754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.91  E-value=1.7e-10  Score=108.33  Aligned_cols=112  Identities=21%  Similarity=0.308  Sum_probs=88.3

Q ss_pred             CCCCccCce--eeeeCCCCCcccC-----CccccccceeEeecCCCCCcCCC----CCCCCCcEEeccCCccCcchhhhh
Q psy13376        113 LDQLVCLEK--LDLGYNRIEQIQG-----LDTLVNLKVLNLKMNRIETIEGL----DHLEKLELFNIAANRIQSLASLVY  181 (417)
Q Consensus       113 l~~l~~L~~--L~Ls~N~l~~l~~-----~~~l~~L~~L~Ls~N~i~~l~~l----~~l~~L~~L~Ls~N~i~~l~~~~~  181 (417)
                      +...+.|..  ++++.|....++.     ...+++|+.|+|++|+|+.++++    ..+++|+.|+|++|.|+++..+..
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~  216 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK  216 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence            555555665  6777776655543     24678999999999999887644    478999999999999999877666


Q ss_pred             hhCCCCcCEEeccCCCCCC-C---CCccHHHHhcCCCcccccCcccCH
Q psy13376        182 LRRFKHLGRLNIERNPVCD-K---ENVDGFAIAMVPQLQCYNNHIILE  225 (417)
Q Consensus       182 l~~l~~L~~L~L~~N~l~~-~---~~~~~~~~~~l~~L~~Ld~~~~~~  225 (417)
                      +..+ +|+.|+|++|+++. .   +.|+..++..+|+|+.||...++.
T Consensus       217 l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p  263 (267)
T 3rw6_A          217 IKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP  263 (267)
T ss_dssp             GTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCC
T ss_pred             cccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCC
Confidence            6666 99999999999986 2   357777899999999999988763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.84  E-value=3.3e-10  Score=117.77  Aligned_cols=17  Identities=12%  Similarity=0.264  Sum_probs=11.7

Q ss_pred             ccccceeeccccccCCC
Q psy13376          6 TVDRIKKIGLIKDRAGD   22 (417)
Q Consensus         6 ~~~~l~~l~l~~n~l~d   22 (417)
                      .+++++.++++.+.+++
T Consensus       110 ~~~~L~~L~L~~~~i~~  126 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSD  126 (592)
T ss_dssp             HCTTCCEEEEESCBCCH
T ss_pred             hCCCCCeEEeeccEecH
Confidence            35667777887776664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.80  E-value=4.7e-09  Score=109.01  Aligned_cols=81  Identities=25%  Similarity=0.233  Sum_probs=39.7

Q ss_pred             CCCCccCceeeeeCCCCCcccC-CccccccceeEeecCCCCCcC---CCCCCCCCcEEeccCCccCcchhhhhhhCCCCc
Q psy13376        113 LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIE---GLDHLEKLELFNIAANRIQSLASLVYLRRFKHL  188 (417)
Q Consensus       113 l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L  188 (417)
                      +..+++|+.|+++++....++. +..+++|++|++++|.++...   .+..+++|++|+++ +.+.+.........+++|
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L  344 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL  344 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred             hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence            3444455555555544444443 445566666666666644321   13455566666665 333332111222445566


Q ss_pred             CEEecc
Q psy13376        189 GRLNIE  194 (417)
Q Consensus       189 ~~L~L~  194 (417)
                      ++|+++
T Consensus       345 ~~L~L~  350 (592)
T 3ogk_B          345 KRLRIE  350 (592)
T ss_dssp             CEEEEE
T ss_pred             CEEEee
Confidence            666665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.67  E-value=1.9e-09  Score=111.92  Aligned_cols=106  Identities=10%  Similarity=0.034  Sum_probs=54.2

Q ss_pred             CccCceeeeeCCCCCccc--CC-ccccccceeEee--c----CCCCCcCC-------CCCCCCCcEEeccCCccCcchhh
Q psy13376        116 LVCLEKLDLGYNRIEQIQ--GL-DTLVNLKVLNLK--M----NRIETIEG-------LDHLEKLELFNIAANRIQSLASL  179 (417)
Q Consensus       116 l~~L~~L~Ls~N~l~~l~--~~-~~l~~L~~L~Ls--~----N~i~~l~~-------l~~l~~L~~L~Ls~N~i~~l~~~  179 (417)
                      +++|+.|.++.|.++...  .+ ..+++|+.|+++  +    |.++..+.       +..+++|++|++++ .+++... 
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~-  448 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF-  448 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH-
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH-
Confidence            555666655555555322  12 245667777776  3    44543321       34455666666655 4444221 


Q ss_pred             hhhhC-CCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCH
Q psy13376        180 VYLRR-FKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILE  225 (417)
Q Consensus       180 ~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~  225 (417)
                      ..+.. +++|+.|++++|.+++...  ......+++|+.|+++.|..
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~--~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGM--HHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHH--HHHHHHCTTCCEEEEESCSC
T ss_pred             HHHHHhchhccEeeccCCCCcHHHH--HHHHhcCCCcCEEECcCCCC
Confidence            22222 5666666666666543221  11224566666666666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.64  E-value=6.5e-08  Score=96.23  Aligned_cols=57  Identities=21%  Similarity=0.210  Sum_probs=27.5

Q ss_pred             CccccccceeEeecCCCC-----CcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEec
Q psy13376        135 LDTLVNLKVLNLKMNRIE-----TIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI  193 (417)
Q Consensus       135 ~~~l~~L~~L~Ls~N~i~-----~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L  193 (417)
                      |.++++|+.+.+.+|.+.     .++  .|.+|++|+.+.+. +.++.++. ..|..+++|+.+.+
T Consensus       267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~-~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ-GLLGGNRKVTQLTI  330 (401)
T ss_dssp             TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT-TTTTTCCSCCEEEE
T ss_pred             hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh-hhhcCCCCccEEEE
Confidence            555555555555554443     232  34555555555554 23444443 34445555555555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.63  E-value=1.7e-09  Score=112.40  Aligned_cols=151  Identities=13%  Similarity=0.070  Sum_probs=107.5

Q ss_pred             cccccEEEeec---------CCCCCCC--Cc-CCCcccceEeeeCCCCCCcC--CC-CCCccCceeeee--C----CCCC
Q psy13376         72 YKLIKAVNLRI---------KTLRKIE--NL-WMMENLVELDLSMNHIGVIE--NL-DQLVCLEKLDLG--Y----NRIE  130 (417)
Q Consensus        72 l~~L~~L~Ls~---------N~i~~i~--~l-~~l~~L~~L~Ls~N~l~~l~--~l-~~l~~L~~L~Ls--~----N~l~  130 (417)
                      +++|+.|++++         +.++...  .+ ..+++|+.|.++.|.++...  .+ ..+++|+.|+++  +    |.++
T Consensus       337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~  416 (594)
T 2p1m_B          337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT  416 (594)
T ss_dssp             CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred             CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence            78899999954         3343221  12 34889999999999988542  23 358899999999  4    6677


Q ss_pred             cccC-------CccccccceeEeecCCCCCc--CCCC-CCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCC
Q psy13376        131 QIQG-------LDTLVNLKVLNLKMNRIETI--EGLD-HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCD  200 (417)
Q Consensus       131 ~l~~-------~~~l~~L~~L~Ls~N~i~~l--~~l~-~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~  200 (417)
                      ..+.       +..+++|+.|++++ .++..  +.+. .+++|++|++++|.+++.........+++|+.|++++|++++
T Consensus       417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence            5432       56778999999977 55543  2233 378999999999999774432233679999999999999844


Q ss_pred             CCCccHHHHhcCCCcccccCcccCH
Q psy13376        201 KENVDGFAIAMVPQLQCYNNHIILE  225 (417)
Q Consensus       201 ~~~~~~~~~~~l~~L~~Ld~~~~~~  225 (417)
                      ...  ......+++|+.|+++.|..
T Consensus       496 ~~~--~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          496 KAL--LANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHH--HHTGGGGGGSSEEEEESSCC
T ss_pred             HHH--HHHHHhCCCCCEEeeeCCCC
Confidence            321  12335689999999998875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.60  E-value=8.6e-08  Score=95.35  Aligned_cols=139  Identities=12%  Similarity=0.139  Sum_probs=91.8

Q ss_pred             cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeE
Q psy13376         72 YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLN  145 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~  145 (417)
                      +++|+.+++++|.++.++.  |. ..+|+.+.+..+ ++.++.  |.++++|+.+++..| ++.++.  |.+ .+|+.+.
T Consensus       179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~  254 (401)
T 4fdw_A          179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK  254 (401)
T ss_dssp             CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred             cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence            5666777777777766654  43 466777777633 665542  667777777777653 566653  555 5677777


Q ss_pred             eecCCCCCcC--CCCCCCCCcEEeccCCccC-----cchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccc
Q psy13376        146 LKMNRIETIE--GLDHLEKLELFNIAANRIQ-----SLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCY  218 (417)
Q Consensus       146 Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~-----~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L  218 (417)
                      + .+.++.++  .|.++++|+.+++.+|.+.     .++. ..|..+++|+.+.+. +.+..++.   ..+..|++|+.+
T Consensus       255 l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~c~~L~~l~l~-~~i~~I~~---~aF~~c~~L~~l  328 (401)
T 4fdw_A          255 L-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-YCLEGCPKLARFEIP-ESIRILGQ---GLLGGNRKVTQL  328 (401)
T ss_dssp             E-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-TTTTTCTTCCEECCC-TTCCEECT---TTTTTCCSCCEE
T ss_pred             e-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-HHhhCCccCCeEEeC-CceEEEhh---hhhcCCCCccEE
Confidence            7 44566664  5778888888888877665     4544 467788888888887 44666655   356677777777


Q ss_pred             cC
Q psy13376        219 NN  220 (417)
Q Consensus       219 d~  220 (417)
                      ++
T Consensus       329 ~l  330 (401)
T 4fdw_A          329 TI  330 (401)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.41  E-value=3.9e-08  Score=92.14  Aligned_cols=102  Identities=27%  Similarity=0.398  Sum_probs=77.4

Q ss_pred             cCCCcccce--EeeeCCCCCCcCC-----CCCCccCceeeeeCCCCCcccC----CccccccceeEeecCCCCCcCCCCC
Q psy13376         91 LWMMENLVE--LDLSMNHIGVIEN-----LDQLVCLEKLDLGYNRIEQIQG----LDTLVNLKVLNLKMNRIETIEGLDH  159 (417)
Q Consensus        91 l~~l~~L~~--L~Ls~N~l~~l~~-----l~~l~~L~~L~Ls~N~l~~l~~----~~~l~~L~~L~Ls~N~i~~l~~l~~  159 (417)
                      +...+.|..  ++++.|....++.     ..++++|+.|+|++|+|+.+++    +..+++|+.|+|++|+|+.+..+..
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~  216 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK  216 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence            555566666  7778886555442     2468899999999999998775    4478999999999999998865555


Q ss_pred             CC--CCcEEeccCCccCc-chh-----hhhhhCCCCcCEEe
Q psy13376        160 LE--KLELFNIAANRIQS-LAS-----LVYLRRFKHLGRLN  192 (417)
Q Consensus       160 l~--~L~~L~Ls~N~i~~-l~~-----~~~l~~l~~L~~L~  192 (417)
                      +.  +|+.|++++|.+.. ++.     ...+..+|+|+.||
T Consensus       217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            54  99999999999975 221     12467899999887

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=7.8e-08  Score=85.10  Aligned_cols=65  Identities=17%  Similarity=0.180  Sum_probs=28.5

Q ss_pred             CCCCcEEeccCCccCcchh---hhhhhCCCCcCEEec--cCCCCCCCCCc-cHHHHhcCCCcccccCcccC
Q psy13376        160 LEKLELFNIAANRIQSLAS---LVYLRRFKHLGRLNI--ERNPVCDKENV-DGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       160 l~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L--~~N~l~~~~~~-~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      .++|++|+|++|.|++-..   ...+...++|++|+|  ++|.|.+.... -...+...++|+.|+++.+.
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            3445555555555544211   112334445555555  45555442210 01133344556666655554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.37  E-value=2.9e-07  Score=90.26  Aligned_cols=152  Identities=14%  Similarity=0.121  Sum_probs=89.1

Q ss_pred             cccccEEEeecCCCCC----------CCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCccc--CC--c
Q psy13376         72 YKLIKAVNLRIKTLRK----------IEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ--GL--D  136 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~----------i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~--~~--~  136 (417)
                      +++|+.|.+..+....          +.. +..+|+|+.|++++|.-..++.+ .+++|+.|++..|.+..-.  .+  .
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence            6788888876543321          112 45667888888887732233444 3778888888887775322  22  3


Q ss_pred             cccccceeEeec--CC------CCCcC---CCCCCCCCcEEeccCCccCcchh--hhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        137 TLVNLKVLNLKM--NR------IETIE---GLDHLEKLELFNIAANRIQSLAS--LVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       137 ~l~~L~~L~Ls~--N~------i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~--~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      .+|+|++|+|+.  |.      +..+.   ....+++|++|++++|.+.+...  +.....+++|++|+|+.|.+.+...
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            677888888753  11      11111   11347788888888888765222  1111246788888888887765321


Q ss_pred             cc-HHHHhcCCCcccccCcccC
Q psy13376        204 VD-GFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       204 ~~-~~~~~~l~~L~~Ld~~~~~  224 (417)
                      -. ...+..+++|+.|+++.+.
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHhhcccCCcceEEECCCCc
Confidence            00 0012456788888876654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.28  E-value=8.9e-07  Score=86.74  Aligned_cols=129  Identities=23%  Similarity=0.268  Sum_probs=93.5

Q ss_pred             cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCc--CCC--CCCccCceeeeeC--CC------CCcccC-C--c
Q psy13376         72 YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVI--ENL--DQLVCLEKLDLGY--NR------IEQIQG-L--D  136 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l--~~l--~~l~~L~~L~Ls~--N~------l~~l~~-~--~  136 (417)
                      +++|+.|++++|.-..++.+. +++|+.|++..+.++.-  ..+  ..+++|+.|+|+.  |.      +..+.. +  .
T Consensus       171 ~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~  249 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD  249 (362)
T ss_dssp             CTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred             CCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence            789999999988422344443 88999999999987632  223  3789999999963  21      222222 2  3


Q ss_pred             cccccceeEeecCCCCCc-----CCCCCCCCCcEEeccCCccCcchh--h-hhhhCCCCcCEEeccCCCCCCC
Q psy13376        137 TLVNLKVLNLKMNRIETI-----EGLDHLEKLELFNIAANRIQSLAS--L-VYLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       137 ~l~~L~~L~Ls~N~i~~l-----~~l~~l~~L~~L~Ls~N~i~~l~~--~-~~l~~l~~L~~L~L~~N~l~~~  201 (417)
                      .+|+|++|+|++|.+..-     .....+++|++|+|+.|.+++...  + ..+..+++|+.|++++|.+++.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            578999999999998742     122468999999999999987432  1 1235679999999999988754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.23  E-value=7.9e-07  Score=78.53  Aligned_cols=110  Identities=19%  Similarity=0.105  Sum_probs=87.8

Q ss_pred             cCCCcccceEeeeCC-CCCCcC------CCCCCccCceeeeeCCCCCccc------CCccccccceeEeecCCCCCc---
Q psy13376         91 LWMMENLVELDLSMN-HIGVIE------NLDQLVCLEKLDLGYNRIEQIQ------GLDTLVNLKVLNLKMNRIETI---  154 (417)
Q Consensus        91 l~~l~~L~~L~Ls~N-~l~~l~------~l~~l~~L~~L~Ls~N~l~~l~------~~~~l~~L~~L~Ls~N~i~~l---  154 (417)
                      +...++|++|+|++| .++.-.      .+...++|++|+|++|.|.+-.      .+...+.|++|+|++|.|+.-   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            567889999999999 998532      3677889999999999997532      155668899999999999863   


Q ss_pred             ---CCCCCCCCCcEEec--cCCccCcchh---hhhhhCCCCcCEEeccCCCCCC
Q psy13376        155 ---EGLDHLEKLELFNI--AANRIQSLAS---LVYLRRFKHLGRLNIERNPVCD  200 (417)
Q Consensus       155 ---~~l~~l~~L~~L~L--s~N~i~~l~~---~~~l~~l~~L~~L~L~~N~l~~  200 (417)
                         ..+...++|++|++  ++|.|++-..   ...+...++|++|++++|.+..
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence               25778889999999  8899987432   1245677899999999998753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.11  E-value=1.3e-06  Score=76.34  Aligned_cols=98  Identities=20%  Similarity=0.266  Sum_probs=52.6

Q ss_pred             cCceeeeeCCCCCcc--cCCccccccceeEeecCC-CCCc--CCCCC----CCCCcEEeccCCc-cCcchhhhhhhCCCC
Q psy13376        118 CLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNR-IETI--EGLDH----LEKLELFNIAANR-IQSLASLVYLRRFKH  187 (417)
Q Consensus       118 ~L~~L~Ls~N~l~~l--~~~~~l~~L~~L~Ls~N~-i~~l--~~l~~----l~~L~~L~Ls~N~-i~~l~~~~~l~~l~~  187 (417)
                      .|+.||++++.|++.  ..+..+++|++|+|++|. |++-  ..+..    .++|++|++++|. |++- .+..+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcCCC
Confidence            456666666655432  235556666666666653 4432  12332    2357777777763 6653 3455667777


Q ss_pred             cCEEeccCCC-CCCCCCccHHHHhcCCCcc
Q psy13376        188 LGRLNIERNP-VCDKENVDGFAIAMVPQLQ  216 (417)
Q Consensus       188 L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~  216 (417)
                      |++|++++++ +++........-..+|+++
T Consensus       141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             CCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             CCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            7777777775 3332211122334566654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.63  E-value=4e-05  Score=66.89  Aligned_cols=83  Identities=17%  Similarity=0.195  Sum_probs=66.3

Q ss_pred             cccceeEeecCCCCCc--CCCCCCCCCcEEeccCCc-cCcchhhhhhhCC----CCcCEEeccCCC-CCCCCCccHHHHh
Q psy13376        139 VNLKVLNLKMNRIETI--EGLDHLEKLELFNIAANR-IQSLASLVYLRRF----KHLGRLNIERNP-VCDKENVDGFAIA  210 (417)
Q Consensus       139 ~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls~N~-i~~l~~~~~l~~l----~~L~~L~L~~N~-l~~~~~~~~~~~~  210 (417)
                      ..|++|+++++.|+..  ..+..+++|++|+|++|. |++ ..+..+..+    ++|++|++++|+ |++..   ...+.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G---l~~L~  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKG---IIALH  136 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHH---HHHGG
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHH---HHHHh
Confidence            4799999999998865  467899999999999995 777 344666664    479999999986 66533   23567


Q ss_pred             cCCCcccccCcccCH
Q psy13376        211 MVPQLQCYNNHIILE  225 (417)
Q Consensus       211 ~l~~L~~Ld~~~~~~  225 (417)
                      .+++|+.|+++.|+.
T Consensus       137 ~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPG  151 (176)
T ss_dssp             GCTTCCEEEEESCTT
T ss_pred             cCCCCCEEECCCCCC
Confidence            899999999999874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.60  E-value=0.00019  Score=70.04  Aligned_cols=106  Identities=17%  Similarity=0.248  Sum_probs=60.1

Q ss_pred             cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCc
Q psy13376         91 LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLE  164 (417)
Q Consensus        91 l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~  164 (417)
                      +..+..|+.+.+..+ ++.++  .|.++.+|+.+.+.. .++.++.  |..+++|+.+.+.++.++.++  .|.++.+|+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence            455556666666544 44443  255666666666643 3555543  666666666666666666654  466666666


Q ss_pred             EEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376        165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       165 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~  201 (417)
                      .+.+..+ ++.++. ..|.++.+|+.+.+..+ ++.+
T Consensus       314 ~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~~-v~~I  347 (379)
T 4h09_A          314 SVTLPTA-LKTIQV-YAFKNCKALSTISYPKS-ITLI  347 (379)
T ss_dssp             EEECCTT-CCEECT-TTTTTCTTCCCCCCCTT-CCEE
T ss_pred             EEEcCcc-ccEEHH-HHhhCCCCCCEEEECCc-cCEE
Confidence            6666543 555544 35566666666666433 4443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.37  E-value=0.00091  Score=65.12  Aligned_cols=123  Identities=14%  Similarity=0.206  Sum_probs=96.0

Q ss_pred             cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCc
Q psy13376         91 LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLE  164 (417)
Q Consensus        91 l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~  164 (417)
                      +....+|+.+.+..+ ++.++  .+.++..|+.+.+..+ ++.++.  |..+.+|+.+.+.. .++.++  .|.++++|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence            455667777777544 44444  3788899999999876 777764  88899999999965 466665  589999999


Q ss_pred             EEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376        165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH  221 (417)
Q Consensus       165 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~  221 (417)
                      .+.+.++.++.++. ..|.++.+|+.+.+..+ ++.+..   ..+..|.+|+.+.+.
T Consensus       290 ~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~---~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          290 KVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTIQV---YAFKNCKALSTISYP  341 (379)
T ss_dssp             EEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEECT---TTTTTCTTCCCCCCC
T ss_pred             cccccccccceehh-hhhcCCCCCCEEEcCcc-ccEEHH---HHhhCCCCCCEEEEC
Confidence            99999999998877 57899999999999654 776665   467788899888763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.25  E-value=0.00079  Score=66.09  Aligned_cols=101  Identities=15%  Similarity=0.164  Sum_probs=48.2

Q ss_pred             CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCc
Q psy13376        113 LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHL  188 (417)
Q Consensus       113 l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L  188 (417)
                      |.++..|+.+.+..+. ..+..  |..++.|+.+.+. +.++.++  .|.++.+|+.+.+..+ ++.+.. ..|.++.+|
T Consensus       261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTC
T ss_pred             eeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCCCC
Confidence            4555555555554332 22332  5555555555553 3344443  3555555555555433 444443 344555555


Q ss_pred             CEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376        189 GRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH  221 (417)
Q Consensus       189 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~  221 (417)
                      +.+.+..+ ++.+..   ..+..|++|+.+++.
T Consensus       337 ~~i~ip~s-v~~I~~---~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPE---SAFSNCTALNNIEYS  365 (394)
T ss_dssp             CEEEECTT-CCBCCG---GGGTTCTTCCEEEES
T ss_pred             CEEEECcc-cCEEhH---hHhhCCCCCCEEEEC
Confidence            55555322 444443   344555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.17  E-value=0.0011  Score=64.94  Aligned_cols=122  Identities=12%  Similarity=0.122  Sum_probs=73.8

Q ss_pred             cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcC--CCCCCCCCcEE
Q psy13376         91 LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIE--GLDHLEKLELF  166 (417)
Q Consensus        91 l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L  166 (417)
                      +..+..++.+.+..+... ++  .|..+..++.+....+.+.. ..|..+.+|+.+.+..+ ++.++  .|.++++|+.+
T Consensus       249 f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             TTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccccceeEEcCCCcce-eeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence            445555555555544322 21  24455555555544332211 02666777777777654 66664  57778888888


Q ss_pred             eccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376        167 NIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH  221 (417)
Q Consensus       167 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~  221 (417)
                      ++..+ ++.++. ..|.++.+|+.+.+..+ ++.++.   .++..|++|+.+++.
T Consensus       326 ~lp~~-v~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~---~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          326 DLPYL-VEEIGK-RSFRGCTSLSNINFPLS-LRKIGA---NAFQGCINLKKVELP  374 (394)
T ss_dssp             CCCTT-CCEECT-TTTTTCTTCCEECCCTT-CCEECT---TTBTTCTTCCEEEEE
T ss_pred             EeCCc-ccEEhH-HhccCCCCCCEEEECcc-ccEehH---HHhhCCCCCCEEEEC
Confidence            88644 666665 46777888888888665 666554   456777888877654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.17  E-value=0.00085  Score=65.86  Aligned_cols=128  Identities=16%  Similarity=0.201  Sum_probs=91.4

Q ss_pred             CCCCCCC--cCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--
Q psy13376         84 TLRKIEN--LWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--  155 (417)
Q Consensus        84 ~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--  155 (417)
                      .++.++.  |..+..|+.+.+..+.. .++  .|.+++.|+.+.+. +.++.++.  |.++.+|+.+.+..+ ++.++  
T Consensus       252 ~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~  328 (394)
T 4gt6_A          252 GVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD  328 (394)
T ss_dssp             TEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             cceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence            3444433  88889999999876543 444  48899999999996 56888875  999999999999764 77775  


Q ss_pred             CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcc
Q psy13376        156 GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHI  222 (417)
Q Consensus       156 ~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~  222 (417)
                      .|.++.+|+.+.+..+ ++.++. ..|.++++|+.+++.++....      ..+..+.+|+.+.+..
T Consensus       329 aF~~C~~L~~i~ip~s-v~~I~~-~aF~~C~~L~~i~~~~~~~~~------~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS-VTKIPE-SAFSNCTALNNIEYSGSRSQW------NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCBCCG-GGGTTCTTCCEEEESSCHHHH------HTCBCCCCC-------
T ss_pred             HhhCCCCCCEEEECcc-cCEEhH-hHhhCCCCCCEEEECCceeeh------hhhhccCCCCEEEeCC
Confidence            6899999999999654 777776 578999999999998874321      1234566677665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.06  E-value=0.0016  Score=63.90  Aligned_cols=136  Identities=9%  Similarity=0.162  Sum_probs=98.1

Q ss_pred             cccccEEEeecCCCCCCC--CcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC--CccccccceeEee
Q psy13376         72 YKLIKAVNLRIKTLRKIE--NLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLK  147 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~--~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls  147 (417)
                      ...++.+.+..+. ..++  .|..++.++.+....+.+.. ..|..+.+|+.+.+..+ ++.++.  |.++.+|+.+++.
T Consensus       252 ~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp  328 (394)
T 4fs7_A          252 CTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP  328 (394)
T ss_dssp             CSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred             cccceeEEcCCCc-ceeeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence            3456666665443 3333  27788888888877654322 14788899999999765 888874  8999999999997


Q ss_pred             cCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccc
Q psy13376        148 MNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCY  218 (417)
Q Consensus       148 ~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L  218 (417)
                      . .++.++  .|.++++|+.+.+..+ ++.++. ..|.++++|+.+++..+ +..+.    ..+..+++|+.+
T Consensus       329 ~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~lp~~-~~~~~----~~F~~c~~L~~I  393 (394)
T 4fs7_A          329 Y-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGA-NAFQGCINLKKVELPKR-LEQYR----YDFEDTTKFKWI  393 (394)
T ss_dssp             T-TCCEECTTTTTTCTTCCEECCCTT-CCEECT-TTBTTCTTCCEEEEEGG-GGGGG----GGBCTTCEEEEE
T ss_pred             C-cccEEhHHhccCCCCCCEEEECcc-ccEehH-HHhhCCCCCCEEEECCC-CEEhh----heecCCCCCcEE
Confidence            5 477775  6899999999999877 888776 57899999999999754 33221    245667776653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.93  E-value=0.00029  Score=62.58  Aligned_cols=111  Identities=10%  Similarity=0.037  Sum_probs=55.4

Q ss_pred             CccCceeeeeCC-CCCccc------CCccccccceeEeecCCCCCcC------CCCCCCCCcEEeccCCccCcchhh---
Q psy13376        116 LVCLEKLDLGYN-RIEQIQ------GLDTLVNLKVLNLKMNRIETIE------GLDHLEKLELFNIAANRIQSLASL---  179 (417)
Q Consensus       116 l~~L~~L~Ls~N-~l~~l~------~~~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~Ls~N~i~~l~~~---  179 (417)
                      -+.|++|+|++| .|..-.      .+..-..|+.|+|++|.|.+..      .+..-+.|++|+|++|.|++-...   
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            344555555543 443211      1334445666666666655331      133445667777777776653221   


Q ss_pred             hhhhCCCCcCEEeccCCCC---CCCCC-ccHHHHhcCCCcccccCcccCHH
Q psy13376        180 VYLRRFKHLGRLNIERNPV---CDKEN-VDGFAIAMVPQLQCYNNHIILED  226 (417)
Q Consensus       180 ~~l~~l~~L~~L~L~~N~l---~~~~~-~~~~~~~~l~~L~~Ld~~~~~~~  226 (417)
                      ..+..-+.|+.|+|++|..   ..... .....+..-+.|+.|+++.....
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            1344455677777765432   22110 01124455677777777666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.92  E-value=0.0017  Score=57.61  Aligned_cols=107  Identities=16%  Similarity=0.153  Sum_probs=79.3

Q ss_pred             cCCCcccceEeeeCC-CCCCcC------CCCCCccCceeeeeCCCCCccc--C----CccccccceeEeecCCCCCcC--
Q psy13376         91 LWMMENLVELDLSMN-HIGVIE------NLDQLVCLEKLDLGYNRIEQIQ--G----LDTLVNLKVLNLKMNRIETIE--  155 (417)
Q Consensus        91 l~~l~~L~~L~Ls~N-~l~~l~------~l~~l~~L~~L~Ls~N~l~~l~--~----~~~l~~L~~L~Ls~N~i~~l~--  155 (417)
                      +..-+.|++|+|++| .|..-.      .+..-+.|+.|+|++|.|.+-.  .    +..-+.|++|+|++|.|+.-.  
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345578999999986 887422      3667789999999999997543  1    556678999999999998643  


Q ss_pred             ----CCCCCCCCcEEeccCC---ccCcchh---hhhhhCCCCcCEEeccCCC
Q psy13376        156 ----GLDHLEKLELFNIAAN---RIQSLAS---LVYLRRFKHLGRLNIERNP  197 (417)
Q Consensus       156 ----~l~~l~~L~~L~Ls~N---~i~~l~~---~~~l~~l~~L~~L~L~~N~  197 (417)
                          .+..-+.|+.|+|++|   .+.+-..   ...+..-+.|+.|+++.|.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence                4677788999999876   4444211   1345677899999997664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.68  E-value=0.0026  Score=52.45  Aligned_cols=39  Identities=15%  Similarity=0.183  Sum_probs=20.2

Q ss_pred             CCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376        162 KLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       162 ~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~  201 (417)
                      +|++|+|++|+|+.++. ..|..+++|+.|+|++||+...
T Consensus        32 ~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             TCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCS
T ss_pred             CCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeecc
Confidence            45555555555555544 3445555555555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.52  E-value=0.0029  Score=52.11  Aligned_cols=52  Identities=23%  Similarity=0.285  Sum_probs=33.1

Q ss_pred             eeeeeCCCCC--cccC-CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccC
Q psy13376        121 KLDLGYNRIE--QIQG-LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQ  174 (417)
Q Consensus       121 ~L~Ls~N~l~--~l~~-~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~  174 (417)
                      .++.+++.++  .+|. +.  ++|++|+|++|+|+.++  .|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666666  6653 22  35667777777777665  3566677777777777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	417
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-15
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-12
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	2e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.6 bits (167), Expect = 8e-15
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 100 LDLSMNHIGVIENLDQLVCLEKLDLGYNRIE-QIQGLDTLVNLKVLNLKMNRIETIEGLD 158
           L L+   + V+ +L+QL+ +  LDL +NR+      L  L  L+VL    N +E ++G+ 
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 159 HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQ 216
           +L +L+   +  NR+Q  A++  L     L  LN++ N +C +E +      M+P + 
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 26/108 (24%)

Query: 76  KAVNLRIKTLRKIENLWMMENLVELDLSMNHI-GVIENLDQLVCL--------------- 119
           + ++L  K L  + +L  +  +  LDLS N +  +   L  L CL               
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 120 -------EKLDLGYNRIEQI---QGLDTLVNLKVLNLKMNRIETIEGL 157
                  ++L L  NR++Q    Q L +   L +LNL+ N +   EG+
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.6 bits (161), Expect = 1e-12
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 5/145 (3%)

Query: 54  NLLSLLQESTNLAEKLQIYKLIKAVNLRI--KTLRKIENLWMMENLVELDLSMNHIGVIE 111
           NL  L   +  ++    +  L K   L++    +  I  L  +  L  L+L+ N +  I 
Sbjct: 242 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301

Query: 112 NLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAAN 171
            +  L  L  L L +N I  I  + +L  L+ L    N++  +  L +L  +   +   N
Sbjct: 302 PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHN 361

Query: 172 RIQSLASLVYLRRFKHLGRLNIERN 196
           +I  L  L  L     + +L +   
Sbjct: 362 QISDLTPLANL---TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 2e-10
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 92  WMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
             ++NL  L L  N+I  I  +  L  L++L    N++  +  L  L N+  L+   N+I
Sbjct: 304 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQI 363

Query: 152 ETI---EGLDHLEKLELFNIA 169
             +     L  + +L L + A
Sbjct: 364 SDLTPLANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 3e-09
 Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 25/149 (16%)

Query: 70  QIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRI 129
            I   +  ++L    L+ I  L  + NL +LDL+ N I  +  L  L  L +L LG N+I
Sbjct: 216 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 275

Query: 130 EQIQGLDTLVN----------------------LKVLNLKMNRIETIEGLDHLEKLELFN 167
             I  L  L                        L  L L  N I  I  +  L KL+   
Sbjct: 276 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 335

Query: 168 IAANRIQSLASLVYLRRFKHLGRLNIERN 196
            A N++  ++SL  L    ++  L+   N
Sbjct: 336 FANNKVSDVSSLANL---TNINWLSAGHN 361

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.2 bits (129), Expect = 1e-08
 Identities = 16/71 (22%), Positives = 30/71 (42%)

Query: 94  MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
           +   ++  L   ++    +   L  +  L      I+ I G++ L NL  +N   N++  
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 80

Query: 154 IEGLDHLEKLE 164
           I  L +L KL 
Sbjct: 81  ITPLKNLTKLV 91

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 31/104 (29%), Positives = 48/104 (46%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           +  I  L ++ NL EL L+ N +  I  L  L  L  LDL  N+I  +  L  L  L  L
Sbjct: 209 ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 268

Query: 145 NLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
            L  N+I  I  L  L  L    +  N+++ ++ +  L+   +L
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 17/82 (20%), Positives = 31/82 (37%)

Query: 107 IGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELF 166
           I  I     L    K  LG   +        L  +  L      I++I+G+++L  L   
Sbjct: 12  INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI 71

Query: 167 NIAANRIQSLASLVYLRRFKHL 188
           N + N++  +  L  L +   +
Sbjct: 72  NFSNNQLTDITPLKNLTKLVDI 93

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 5/131 (3%)

Query: 92  WMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
             + NL  L  + N I  I  L  L  L++L L  N+++ I  L +L NL  L+L  N+I
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 253

Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAM 211
             +  L  L KL    + AN+I +++ L  L    +     +E N    ++      +  
Sbjct: 254 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN-----LELNENQLEDISPISNLKN 308

Query: 212 VPQLQCYNNHI 222
           +  L  Y N+I
Sbjct: 309 LTYLTLYFNNI 319

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 63  TNLAEKLQIYKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKL 122
           T LAEK+          L    +    +   ++ +  L      I  I+ ++ L  L ++
Sbjct: 19  TALAEKM-------KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI 71

Query: 123 DLGYNRIEQIQGLDTLVNLKVLN 145
           +   N++  I  L  L  L  + 
Sbjct: 72  NFSNNQLTDITPLKNLTKLVDIL 94

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 9e-05
 Identities = 29/85 (34%), Positives = 41/85 (48%)

Query: 104 MNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKL 163
            N +  I  L +L  LE L    N+I  I  L  L NL  L+L  N+++ I  L  L  L
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 243

Query: 164 ELFNIAANRIQSLASLVYLRRFKHL 188
              ++A N+I +LA L  L +   L
Sbjct: 244 TDLDLANNQISNLAPLSGLTKLTEL 268

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (151), Expect = 2e-12
 Identities = 47/157 (29%), Positives = 66/157 (42%), Gaps = 3/157 (1%)

Query: 78  VNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLD-QLVCLEKLDLGYNRIEQIQGLD 136
           V L  + + +           ELDL    I VIENL   L   + +D   N I ++ G  
Sbjct: 1   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 137 TLVNLKVLNLKMNRIETI--EGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIE 194
            L  LK L +  NRI  I       L  L    +  N +  L  L  L   K L  L I 
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120

Query: 195 RNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTA 231
           RNPV +K++   + I  VPQ++  +   +   ER+ A
Sbjct: 121 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 157

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.4 bits (129), Expect = 8e-09
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 5/79 (6%)

Query: 90  NLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMN 149
              +  +L EL++S N +  +  L     LE+L   +N + ++  L    NLK L+++ N
Sbjct: 279 LCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPEL--PQNLKQLHVEYN 334

Query: 150 RIETI-EGLDHLEKLELFN 167
            +    +  + +E L + +
Sbjct: 335 PLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 92  WMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
                     L+ +   +    D    LE+L++  N++ ++  L     L+ L    N +
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHL 316

Query: 152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLN 192
             +  L   + L+  ++  N ++    +      + L R+N
Sbjct: 317 AEVPEL--PQNLKQLHVEYNPLREFPDI--PESVEDL-RMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 81  RIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVN 140
           R   + ++ +  +     EL+L+   +  +   +    LE L    N + ++  L    +
Sbjct: 25  REMAVSRLRD-CLDRQAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPEL--PQS 79

Query: 141 LKVLNLKMNRIETIEGLDHLEKLELFN 167
           LK L +  N ++ +  L  L +    +
Sbjct: 80  LKSLLVDNNNLKALSDLPPLLEYLGVS 106

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 14/74 (18%), Positives = 35/74 (47%)

Query: 87  KIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNL 146
           +I +       ++ +L    +      ++L  ++++    + I+ +QG+  L N+  L L
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL 75

Query: 147 KMNRIETIEGLDHL 160
             N++  I+ L +L
Sbjct: 76  NGNKLTDIKPLANL 89

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 12/81 (14%), Positives = 32/81 (39%)

Query: 107 IGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELF 166
           I  I + D      K +L    +      + L ++  +    + I++++G+ +L  +   
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 73

Query: 167 NIAANRIQSLASLVYLRRFKH 187
            +  N++  +  L  L+    
Sbjct: 74  FLNGNKLTDIKPLANLKNLGW 94

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 20/55 (36%), Positives = 24/55 (43%)

Query: 92  WMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNL 146
             +  L  L L  N I  I  L  L  L+ L L  N I  ++ L  L NL VL L
Sbjct: 153 SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 26/81 (32%), Positives = 36/81 (44%)

Query: 88  IENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLK 147
           I  L  +  L  L L  N I  I  L +L  L+ L L  N+I  I  L  L  L+ L L 
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186

Query: 148 MNRIETIEGLDHLEKLELFNI 168
            N I  +  L  L+ L++  +
Sbjct: 187 KNHISDLRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDL 124
           +  I  L  +  L  L LS NHI  +  L  L  L+ L+L
Sbjct: 168 ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 16/58 (27%), Positives = 23/58 (39%)

Query: 89  ENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNL 146
             L  +  L  L    N I  I  L  L  L ++ L  N+I  +  L    NL ++ L
Sbjct: 167 TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 6e-06
 Identities = 16/68 (23%), Positives = 26/68 (38%)

Query: 107 IGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELF 166
           I VI     L    K+  G + +        L  +  L+     + TIEG+ +L  L   
Sbjct: 9   INVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGL 68

Query: 167 NIAANRIQ 174
            +  N+I 
Sbjct: 69  ELKDNQIT 76

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 22/84 (26%), Positives = 36/84 (42%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           +  I  L  + NL  L +    +  +  L  L  L  L    N+I  I  L +L NL  +
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEV 200

Query: 145 NLKMNRIETIEGLDHLEKLELFNI 168
           +LK N+I  +  L +   L +  +
Sbjct: 201 HLKNNQISDVSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 94  MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
           + N +++    +++        L  +  L      +  I+G+  L NL  L LK N+I  
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD 77

Query: 154 IEGLDHLEK 162
           +  L +L K
Sbjct: 78  LAPLKNLTK 86

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 7e-04
 Identities = 26/99 (26%), Positives = 40/99 (40%)

Query: 90  NLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMN 149
            L  + NL  L L +N I  I  L  L  L+ L +G  ++  +  L  L  L  L    N
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 150 RIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHL 188
           +I  I  L  L  L   ++  N+I  ++ L        +
Sbjct: 184 KISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 7e-06
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 101 DLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHL 160
           D  +N I     L + +   K  LG   +        L  +  L      I++I+G+++L
Sbjct: 5   DTPINQIFTDTALAEKM---KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYL 61

Query: 161 EKLELFNIAANRIQ 174
             L   N + N++ 
Sbjct: 62  NNLTQINFSNNQLT 75

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 1e-05
 Identities = 13/66 (19%), Positives = 27/66 (40%)

Query: 94  MENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIET 153
           +   ++  L   ++    +   L  +  L      I+ I G++ L NL  +N   N++  
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 76

Query: 154 IEGLDH 159
           I  L +
Sbjct: 77  ITPLKN 82

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 92  WMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
             + NL  L+LS N I  I  L  L  L++L+   N++  ++ L  L  L+ L++  N++
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKV 184

Query: 152 ETIEGLDHLEKLE 164
             I  L  L  LE
Sbjct: 185 SDISVLAKLTNLE 197

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 85  LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVL 144
           +  I  L  + +L +L+ S N +  ++ L  L  LE+LD+  N++  I  L  L NL+ L
Sbjct: 140 ISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 35/170 (20%)

Query: 96  NLVELDLSMNHIGVIENLD----QLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI 151
              +++L    I  IE +D     L   + L L  N IE+I  L  + NL++L+L  N I
Sbjct: 24  EAEKVELHGM-IPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLI 82

Query: 152 ETIEGLDHLEKL-----------------------ELFNIAANRIQSLASLVYLRRFKHL 188
           + IE LD +                           +  ++ N+I +   +  L     L
Sbjct: 83  KKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142

Query: 189 GRLNIERNPVCDK-------ENVDGFAIAMVPQLQCYNNHIILEDERRTA 231
             L +  NP+ +               +  +P L+  +   +  DER  A
Sbjct: 143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQA 192

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 107 IGVIENLDQLVCLEKLDLG-YNRIEQIQGLD----TLVNLKVLNLKMNRIETIEGLDHLE 161
           I + E    +V  E   +  +  I  I+ +D    TL   K L L  N IE I  L  +E
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGME 70

Query: 162 KLE 164
            L 
Sbjct: 71  NLR 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 6e-05
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 12/90 (13%)

Query: 96  NLVELDLSMNHI---GVIENLDQLVCLEKLDLGYNRIEQI------QGLDTLVNLKVLNL 146
           ++  LD+    +      E L  L   + + L    + +         L     L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 147 KMNRIETIEGLDHLEKLELFNIAANRIQSL 176
           + N +    G+  +  L+     + +IQ L
Sbjct: 63  RSNEL-GDVGVHCV--LQGLQTPSCKIQKL 89

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 16/92 (17%)

Query: 90  NLWMMENLVELDLSMNHIG------VIENLDQLVCLEKLDLGYNRIEQIQGLDTLV---- 139
                  L  L L+   +       +   L     L +LDL  N +    G+  LV    
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD-AGILQLVESVR 422

Query: 140 ----NLKVLNLKMNRIETIEGLDHLEKLELFN 167
                L+ L L      + E  D L+ LE   
Sbjct: 423 QPGCLLEQLVLYDIYW-SEEMEDRLQALEKDK 453

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 7e-05
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 32/154 (20%)

Query: 79  NLRIKTLRKIENLWMMENLVELDLSMNHIGVIENL-DQLVCLEKLDLGYNRIEQIQGLD- 136
            L +K LR   +L      V L+   +    +  + + +  L  L+L  NR+ ++  +  
Sbjct: 26  ALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS 85

Query: 137 ---TLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNI 193
                 NLK+LNL  N +++   LD                         +   L  L +
Sbjct: 86  IVQKAPNLKILNLSGNELKSERELDK-----------------------IKGLKLEELWL 122

Query: 194 ERNPVC----DKENVDGFAIAMVPQLQCYNNHII 223
           + N +     D+           P+L   + H +
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGHEL 156

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 96  NLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLKMNRI 151
           +   LDL  N I  I++     L  L  L L  N+I +I       LV L+ L L  N++
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 152 ETI 154
           + +
Sbjct: 92  KEL 94

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 8e-04
 Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 92  WMMENLVELDLSMNHIGVI--ENLDQLVCLEKLDLGYNRIEQI--QGLDTLVNLKVLNLK 147
              +         N++  +  +          LD+   RI  +   GL+ L  L+  +  
Sbjct: 174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST- 232

Query: 148 MNRIETIEGLD 158
              ++ +  L+
Sbjct: 233 -YNLKKLPTLE 242

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 92  WMMENLVELDLSMNHI-GVI-ENLDQLVCLEKLDLGYNRIE-QIQGLDTLVNLKVLNLKM 148
            + +NL  LDL  N I G + + L QL  L  L++ +N +  +I     L    V     
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300

Query: 149 NR 150
           N+
Sbjct: 301 NK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 89  ENLWMMENLVELDLSMNHI-GVIENLDQLVCLEKLDLGYNR 128
           + L  ++ L  L++S N++ G I     L   +      N+
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	417
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.87
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.82
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.69
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.67
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.56
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.5
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.4
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.37
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.37
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	99.02
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.78
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.75
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.65
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.65
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.51
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.25
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.69
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.62
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.01
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.98

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.4e-23  Score=179.24  Aligned_cols=153  Identities=29%  Similarity=0.311  Sum_probs=137.5

Q ss_pred             CCCCCCCCcCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCC--CCC
Q psy13376         83 KTLRKIENLWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEG--LDH  159 (417)
Q Consensus        83 N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~--l~~  159 (417)
                      +.|...+.+.++.++++|+|++|+|+.+++ +..+++|+.|++++|.|++++++..+++|++|++++|+++.++.  +..
T Consensus         6 ~~i~~~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~   85 (162)
T d1a9na_           6 ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQA   85 (162)
T ss_dssp             HHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             HHHhhhHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccc
Confidence            334445557778889999999999999987 46789999999999999999889999999999999999999864  567


Q ss_pred             CCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCHHHHHHHHHHH
Q psy13376        160 LEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILEDERRTALEQH  235 (417)
Q Consensus       160 l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~  235 (417)
                      +++|++|++++|+|++++.+..++.+++|+++++++|+++..+.|+.+++..+|+|++||...++..++..|+..|
T Consensus        86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i~~~er~~A~~~~  161 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMF  161 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHHHHHHTT
T ss_pred             ccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCCCCHHHHHHHHHHh
Confidence            9999999999999999988778899999999999999999999999999999999999999999999999888765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=3e-20  Score=165.67  Aligned_cols=154  Identities=28%  Similarity=0.383  Sum_probs=136.9

Q ss_pred             ccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC
Q psy13376         57 SLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG  134 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~  134 (417)
                      .+.++.+.|.+++++  +++|++|++++|+++.+++++++++|++|++++|.+..++++.++++|+.|++++|.+..+++
T Consensus        44 ~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  123 (199)
T d2omxa2          44 TLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP  123 (199)
T ss_dssp             EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG
T ss_pred             EEECCCCCCCCccccccCCCcCcCccccccccCcccccCCcccccccccccccccccccccccccccccccccccccccc
Confidence            456778888888887  899999999999999998899999999999999999999889999999999999999998888


Q ss_pred             CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCC
Q psy13376        135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQ  214 (417)
Q Consensus       135 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~  214 (417)
                      +..+++|+.|++++|++..++.+..+++|+.|++++|+++++++   +.++++|+.|++++|++++++.     ++.+++
T Consensus       124 ~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~---l~~l~~L~~L~ls~N~i~~i~~-----l~~L~~  195 (199)
T d2omxa2         124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP---LANLTTLERLDISSNKVSDISV-----LAKLTN  195 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GGGCTT
T ss_pred             cchhhhhHHhhhhhhhhcccccccccccccccccccccccCCcc---ccCCCCCCEEECCCCCCCCCcc-----ccCCCC
Confidence            88899999999999999988888999999999999999998765   5788999999999999998764     467888


Q ss_pred             cccc
Q psy13376        215 LQCY  218 (417)
Q Consensus       215 L~~L  218 (417)
                      |+.|
T Consensus       196 L~~L  199 (199)
T d2omxa2         196 LESL  199 (199)
T ss_dssp             CSEE
T ss_pred             CCcC
Confidence            7764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=6.9e-20  Score=164.72  Aligned_cols=157  Identities=25%  Similarity=0.336  Sum_probs=143.0

Q ss_pred             ccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC
Q psy13376         57 SLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG  134 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~  134 (417)
                      .+.++.+.|..+.++  +++|++|++++|+|+.+++++.+++|++|++++|+++.++.+..+++|+.|++++|.+..++.
T Consensus        50 ~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~~  129 (210)
T d1h6ta2          50 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING  129 (210)
T ss_dssp             EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGG
T ss_pred             EEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccccccccccccccccccccccccc
Confidence            456778888888887  999999999999999999999999999999999999999989999999999999999999988


Q ss_pred             CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCC
Q psy13376        135 LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQ  214 (417)
Q Consensus       135 ~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~  214 (417)
                      +..++.++.+++++|.++..+.+..+++|+++++++|+++++++   +..+++|+.|++++|++++++.     +..+++
T Consensus       130 l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~---l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~~  201 (210)
T d1h6ta2         130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA-----LAGLKN  201 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG-----GTTCTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc---ccCCCCCCEEECCCCCCCCChh-----hcCCCC
Confidence            99999999999999999998888899999999999999998764   5789999999999999998764     578999


Q ss_pred             cccccCc
Q psy13376        215 LQCYNNH  221 (417)
Q Consensus       215 L~~Ld~~  221 (417)
                      |++|+++
T Consensus       202 L~~L~Ls  208 (210)
T d1h6ta2         202 LDVLELF  208 (210)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEcc
Confidence            9999875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.7e-19  Score=148.58  Aligned_cols=121  Identities=28%  Similarity=0.449  Sum_probs=110.2

Q ss_pred             ceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC-CccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcc
Q psy13376         98 VELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSL  176 (417)
Q Consensus        98 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l  176 (417)
                      +.|+|++|+++.+++++.+++|++|++++|.|+.+|. +..+++|+.|++++|.|+.++++..+++|++|++++|+|+++
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~   80 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS   80 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCC
Confidence            5789999999988888999999999999999999975 888999999999999999999899999999999999999998


Q ss_pred             hhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccc
Q psy13376        177 ASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCY  218 (417)
Q Consensus       177 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L  218 (417)
                      +.+..+..+++|+.+++++|+++..+.++..+...+|+|+.+
T Consensus        81 ~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          81 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            876778899999999999999999998888888899999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=6.4e-19  Score=159.92  Aligned_cols=200  Identities=21%  Similarity=0.275  Sum_probs=113.9

Q ss_pred             ceeeccccccCCCCchhhhHHHHHhcCCC---CCChhhhhccccccccccccccccCCcchhhhh--cccccEEEeecCC
Q psy13376         10 IKKIGLIKDRAGDESTLKNLAQVLQNAPA---IINEDLLSKKGVISENLLSLLQESTNLAEKLQI--YKLIKAVNLRIKT   84 (417)
Q Consensus        10 l~~l~l~~n~l~dl~~L~~l~~L~~~~~~---~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~   84 (417)
                      ...+++.+++++|...++.+..+..+...   +-+...+..+    .....+.++.|+|..+.++  +++++.+++++|.
T Consensus        21 ~~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~~l~~l----~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYL----NNLIGLELKDNQITDLAPLKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTTGGGC----TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC
T ss_pred             HHHHHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcchhHhcC----CCCcEeecCCceeecccccccccccccccccccc
Confidence            34566667777776666655444333211   0011111111    0112233444444444443  4445555555555


Q ss_pred             CCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCCCc
Q psy13376         85 LRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLE  164 (417)
Q Consensus        85 i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~  164 (417)
                      ++.++.+..+++|+.++++++....++.+...+.+..+.++++.+.....+..+++|++|++++|.++..+++.++++|+
T Consensus        97 ~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~  176 (227)
T d1h6ua2          97 LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT  176 (227)
T ss_dssp             CSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCC
T ss_pred             ccccccccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccce
Confidence            44444444445555555554444444444444455555555555544444566677888888888877777777788888


Q ss_pred             EEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCc
Q psy13376        165 LFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNH  221 (417)
Q Consensus       165 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~  221 (417)
                      .|++++|++++++.   +..+++|++|++++|+++++++     +..+++|+.|+++
T Consensus       177 ~L~Ls~n~l~~l~~---l~~l~~L~~L~Ls~N~lt~i~~-----l~~l~~L~~L~ls  225 (227)
T d1h6ua2         177 TLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTLT  225 (227)
T ss_dssp             EEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCGG-----GTTCTTCCEEEEE
T ss_pred             ecccCCCccCCChh---hcCCCCCCEEECcCCcCCCCcc-----cccCCCCCEEEee
Confidence            88888888877654   4677888888888888877764     4577778777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=2.4e-18  Score=153.18  Aligned_cols=156  Identities=24%  Similarity=0.343  Sum_probs=140.3

Q ss_pred             cCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCcccc
Q psy13376         62 STNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLV  139 (417)
Q Consensus        62 ~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~  139 (417)
                      .+.+.+....  +++++.|++++|+|++++++..+++|++|++++|+++.++++.++++|++|++++|.+..++++..++
T Consensus        27 ~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~  106 (199)
T d2omxa2          27 KTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT  106 (199)
T ss_dssp             CSSTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCT
T ss_pred             CCCCCCccCHHHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCccccccccccccccccccccccc
Confidence            3444443333  78999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             ccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCccccc
Q psy13376        140 NLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYN  219 (417)
Q Consensus       140 ~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld  219 (417)
                      .|+.|++++|.+..++++..+++|+.|++++|++..++.   +..+++|+.|++.+|.++++++     ++.+++|+.|+
T Consensus       107 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---l~~~~~L~~L~l~~n~l~~l~~-----l~~l~~L~~L~  178 (199)
T d2omxa2         107 NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLNFSSNQVTDLKP-----LANLTTLERLD  178 (199)
T ss_dssp             TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEE
T ss_pred             ccccccccccccccccccchhhhhHHhhhhhhhhccccc---ccccccccccccccccccCCcc-----ccCCCCCCEEE
Confidence            999999999999998889999999999999999988764   5789999999999999999865     57899999999


Q ss_pred             CcccCH
Q psy13376        220 NHIILE  225 (417)
Q Consensus       220 ~~~~~~  225 (417)
                      ++.+..
T Consensus       179 ls~N~i  184 (199)
T d2omxa2         179 ISSNKV  184 (199)
T ss_dssp             CCSSCC
T ss_pred             CCCCCC
Confidence            998764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.76  E-value=3.3e-21  Score=172.04  Aligned_cols=162  Identities=23%  Similarity=0.315  Sum_probs=137.1

Q ss_pred             ccccEEEeecC--CCCCCCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC-CccccccceeEeec
Q psy13376         73 KLIKAVNLRIK--TLRKIEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKM  148 (417)
Q Consensus        73 ~~L~~L~Ls~N--~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~  148 (417)
                      ...+.+++.++  .++.++. +..+++|++|+|++|.|+.++++.++++|++|++++|.|+++++ +..+++|++|++++
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccccccccccccccccccccc
Confidence            33455666554  4555543 78889999999999999999889999999999999999999987 44567899999999


Q ss_pred             CCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC-------CCccHHHHhcCCCcccccCc
Q psy13376        149 NRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK-------ENVDGFAIAMVPQLQCYNNH  221 (417)
Q Consensus       149 N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~-------~~~~~~~~~~l~~L~~Ld~~  221 (417)
                      |+|+.++++..+++|++|++++|+|++++.+..+..+++|+.|++++|+++..       +.|+..++..+|+|+.||..
T Consensus       103 N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         103 NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             EECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSG
T ss_pred             ccccccccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCc
Confidence            99999988888999999999999999988777889999999999999988543       23556678899999999999


Q ss_pred             ccCHHHHHHHHHH
Q psy13376        222 IILEDERRTALEQ  234 (417)
Q Consensus       222 ~~~~~~~~~~~~~  234 (417)
                      .++..++..|+.+
T Consensus       183 ~I~~~er~~A~~~  195 (198)
T d1m9la_         183 PVDVDEREQANVA  195 (198)
T ss_dssp             GGTTTTTTHHHHH
T ss_pred             cCCHHHHHHHHHh
Confidence            9999999888875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2.6e-18  Score=154.23  Aligned_cols=176  Identities=27%  Similarity=0.300  Sum_probs=142.2

Q ss_pred             eccccccCCCCchhhhHHHHHhcCC---CCCChhhhhccccccccccccccccCCcchhhhh--cccccEEEeecCCCCC
Q psy13376         13 IGLIKDRAGDESTLKNLAQVLQNAP---AIINEDLLSKKGVISENLLSLLQESTNLAEKLQI--YKLIKAVNLRIKTLRK   87 (417)
Q Consensus        13 l~l~~n~l~dl~~L~~l~~L~~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~   87 (417)
                      ..+.++.+++......+..+..+..   .+.+...+..++    ....+.+++|+|..+.++  +++|+.|++++|+|+.
T Consensus        29 ~~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~l~~l~~l~----~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~  104 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLP----NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD  104 (210)
T ss_dssp             HHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCT----TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             HHhCcCccCCccCHHHhcCccEEECcCCCCCCchhHhhCC----CCCEEeCCCccccCccccccCccccccccccccccc
Confidence            3455666666555444444433321   111222222221    123567889999998877  9999999999999999


Q ss_pred             CCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCcCCCCCCCCCcEEe
Q psy13376         88 IENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFN  167 (417)
Q Consensus        88 i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~  167 (417)
                      ++.+..+++|+.|++++|.+..++.+..++.++.+++++|.++..+.+..+++|+++++++|+++.++++.++++|+.|+
T Consensus       105 l~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~  184 (210)
T d1h6ta2         105 LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY  184 (210)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCEEE
Confidence            99999999999999999999999889999999999999999998888889999999999999999998899999999999


Q ss_pred             ccCCccCcchhhhhhhCCCCcCEEeccC
Q psy13376        168 IAANRIQSLASLVYLRRFKHLGRLNIER  195 (417)
Q Consensus       168 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~  195 (417)
                      +++|+|++++.   +..+++|++|+|++
T Consensus       185 Ls~N~i~~l~~---l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         185 LSKNHISDLRA---LAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCBCGG---GTTCTTCSEEEEEE
T ss_pred             CCCCCCCCChh---hcCCCCCCEEEccC
Confidence            99999998864   58899999999964

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.9e-18  Score=158.52  Aligned_cols=188  Identities=22%  Similarity=0.190  Sum_probs=156.5

Q ss_pred             ccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhh--h--cccccEEEeecC
Q psy13376          8 DRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQ--I--YKLIKAVNLRIK   83 (417)
Q Consensus         8 ~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~--l--l~~L~~L~Ls~N   83 (417)
                      ..+.+++...++++.+++  +           +.    +++       ..|++++|+|+.+..  +  +++|++|++++|
T Consensus        10 ~~~~~v~C~~~~L~~iP~--~-----------lp----~~l-------~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N   65 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPP--D-----------LP----KDT-------TILHLSENLLYTFSLATLMPYTRLTQLNLDRA   65 (266)
T ss_dssp             TTCCEEECTTSCCSSCCS--C-----------CC----TTC-------CEEECTTSCCSEEEGGGGTTCTTCCEEECTTS
T ss_pred             CCCeEEEccCCCCCeeCc--C-----------cC----cCC-------CEEECcCCcCCCcCHHHhhccccccccccccc
Confidence            445667888888776642  1           11    112       344688888888754  2  889999999999


Q ss_pred             CCCCCCCcCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC--CccccccceeEeecCCCCCcC--CCC
Q psy13376         84 TLRKIENLWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLD  158 (417)
Q Consensus        84 ~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~  158 (417)
                      +|+.++.++.+++|++|++++|+++.++. +..+++|++|++++|.+..++.  +..++++++|++++|.++.++  .+.
T Consensus        66 ~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~  145 (266)
T d1p9ag_          66 ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT  145 (266)
T ss_dssp             CCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceecccccc
Confidence            99999888999999999999999998765 8899999999999999998875  788899999999999999986  477


Q ss_pred             CCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        159 HLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       159 ~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      .+++|+.+++++|+++.++. ..+..+++|++|+|++|.|+.+|.    .+..+++|+.|+++.++
T Consensus       146 ~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~L~~lp~----~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         146 PTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPK----GFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCCCSEEECCSCC
T ss_pred             ccccchhcccccccccccCc-cccccccccceeecccCCCcccCh----hHCCCCCCCEEEecCCC
Confidence            89999999999999999876 567899999999999999999986    34568899999987654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.2e-17  Score=161.76  Aligned_cols=158  Identities=24%  Similarity=0.341  Sum_probs=139.8

Q ss_pred             cccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCC
Q psy13376         58 LLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGL  135 (417)
Q Consensus        58 l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~  135 (417)
                      +.+++|++..+..+  +++|+.+++++|.++.++++..+++|+.|++++|+++.++++..++.++.+.+++|.++.++.+
T Consensus       224 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~  303 (384)
T d2omza2         224 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI  303 (384)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGG
T ss_pred             EECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCcccccccccccccccccccccccc
Confidence            35677778777766  8899999999999999988999999999999999999888888999999999999999988888


Q ss_pred             ccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCc
Q psy13376        136 DTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQL  215 (417)
Q Consensus       136 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L  215 (417)
                      ..++++++|++++|+++.++++..+++|++|++++|+|++++.   +..+++|++|++++|+++++++     +..+++|
T Consensus       304 ~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~---l~~l~~L~~L~l~~N~l~~l~~-----l~~l~~L  375 (384)
T d2omza2         304 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS---LANLTNINWLSAGHNQISDLTP-----LANLTRI  375 (384)
T ss_dssp             GGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCBCGG-----GTTCTTC
T ss_pred             chhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChh---HcCCCCCCEEECCCCcCCCChh-----hccCCCC
Confidence            8899999999999999999888999999999999999998764   5789999999999999998875     5688999


Q ss_pred             ccccCccc
Q psy13376        216 QCYNNHII  223 (417)
Q Consensus       216 ~~Ld~~~~  223 (417)
                      +.|+++.+
T Consensus       376 ~~L~L~~N  383 (384)
T d2omza2         376 TQLGLNDQ  383 (384)
T ss_dssp             SEEECCCE
T ss_pred             CEeeCCCC
Confidence            99988753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.1e-18  Score=157.20  Aligned_cols=164  Identities=20%  Similarity=0.199  Sum_probs=145.6

Q ss_pred             cccccCCcchhhhh-cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC
Q psy13376         58 LLQESTNLAEKLQI-YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG  134 (417)
Q Consensus        58 l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~  134 (417)
                      ++.++++++.++.- .+++++|+|++|.|+.++.  |..+++|++|+|++|+|+.++.++.+++|++|++++|+++.++.
T Consensus        15 v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~   94 (266)
T d1p9ag_          15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL   94 (266)
T ss_dssp             EECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCC
T ss_pred             EEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence            45667778877654 6789999999999999864  89999999999999999999988999999999999999998876


Q ss_pred             -CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhc
Q psy13376        135 -LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAM  211 (417)
Q Consensus       135 -~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  211 (417)
                       +..+++|+.|++++|.+..++  .+..+.++++|++++|.++.++. ..+..+++++.+++++|.++.++.   ..+..
T Consensus        95 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~-~~~~~l~~l~~l~l~~N~l~~~~~---~~~~~  170 (266)
T d1p9ag_          95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELPA---GLLNG  170 (266)
T ss_dssp             CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCCCT---TTTTT
T ss_pred             ccccccccccccccccccceeeccccccccccccccccccccceecc-ccccccccchhcccccccccccCc---ccccc
Confidence             889999999999999999885  57889999999999999999887 567889999999999999999876   35678


Q ss_pred             CCCcccccCcccCH
Q psy13376        212 VPQLQCYNNHIILE  225 (417)
Q Consensus       212 l~~L~~Ld~~~~~~  225 (417)
                      +++|++||++.+..
T Consensus       171 l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         171 LENLDTLLLQENSL  184 (266)
T ss_dssp             CTTCCEEECCSSCC
T ss_pred             ccccceeecccCCC
Confidence            99999999988764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=8.4e-17  Score=145.70  Aligned_cols=162  Identities=23%  Similarity=0.321  Sum_probs=143.1

Q ss_pred             cccccccCCcchhhhh--cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCccc
Q psy13376         56 LSLLQESTNLAEKLQI--YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQ  133 (417)
Q Consensus        56 ~~l~~~~n~i~~l~~l--l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~  133 (417)
                      ..+.+.+++|++++++  +++|+.|++++|.|+.+.++..+++++++++++|.++.++++.++++|+.++++++....++
T Consensus        44 ~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~  123 (227)
T d1h6ua2          44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT  123 (227)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCG
T ss_pred             CEEECCCCCCCcchhHhcCCCCcEeecCCceeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3456788889888887  99999999999999998889999999999999999999888889999999999999988888


Q ss_pred             CCccccccceeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCC
Q psy13376        134 GLDTLVNLKVLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVP  213 (417)
Q Consensus       134 ~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  213 (417)
                      .+...+.+..+.++++.+.....+..+++|++|++++|.+.++++   +..+++|+.|++++|.++++++     ++.++
T Consensus       124 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---l~~l~~L~~L~Ls~n~l~~l~~-----l~~l~  195 (227)
T d1h6ua2         124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDISP-----LASLP  195 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GGGCT
T ss_pred             hhccccchhhhhchhhhhchhhhhccccccccccccccccccchh---hcccccceecccCCCccCCChh-----hcCCC
Confidence            888888999999999988887778889999999999999988765   5789999999999999998865     57899


Q ss_pred             CcccccCcccCH
Q psy13376        214 QLQCYNNHIILE  225 (417)
Q Consensus       214 ~L~~Ld~~~~~~  225 (417)
                      +|++|+++.+..
T Consensus       196 ~L~~L~Ls~N~l  207 (227)
T d1h6ua2         196 NLIEVHLKNNQI  207 (227)
T ss_dssp             TCCEEECTTSCC
T ss_pred             CCCEEECcCCcC
Confidence            999999998763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.4e-17  Score=151.96  Aligned_cols=195  Identities=21%  Similarity=0.221  Sum_probs=144.9

Q ss_pred             ccccc-ccceeeccccccCCCCch--hhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhh----cccc
Q psy13376          3 IPTTV-DRIKKIGLIKDRAGDEST--LKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI----YKLI   75 (417)
Q Consensus         3 ip~~~-~~l~~l~l~~n~l~dl~~--L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l----l~~L   75 (417)
                      ||..+ .++++++++.|.++.+++  +.++.                ++       ..+++++|++..+...    +..+
T Consensus        26 iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~----------------~L-------~~L~ls~n~l~~i~~~~~~~~~~~   82 (284)
T d1ozna_          26 VPVGIPAASQRIFLHGNRISHVPAASFRACR----------------NL-------TILWLHSNVLARIDAAAFTGLALL   82 (284)
T ss_dssp             CCTTCCTTCSEEECTTSCCCEECTTTTTTCT----------------TC-------CEEECCSSCCCEECTTTTTTCTTC
T ss_pred             cCCCCCCCCCEEECcCCcCCCCCHHHhhccc----------------cc-------cccccccccccccccccccccccc
Confidence            44433 357889999999987654  33221                11       2334666666665544    5566


Q ss_pred             cEEEee-cCCCCCCCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCcccC--CccccccceeEeec
Q psy13376         76 KAVNLR-IKTLRKIEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKM  148 (417)
Q Consensus        76 ~~L~Ls-~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~  148 (417)
                      ..+... .+.++.++.  |.++++|++|++++|.+..++.  +..+.+|+.+++++|.++.++.  |..+++|++|++++
T Consensus        83 ~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~  162 (284)
T d1ozna_          83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG  162 (284)
T ss_dssp             CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhccccc
Confidence            666553 566777754  7888889999999888887653  7778888899999998888874  77888889999999


Q ss_pred             CCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        149 NRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       149 N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      |+++.++  .+.++++|+++++++|+++.+.+ ..|..+++|++|++++|.+..++.   ..+..+++|++|+++.++
T Consensus       163 N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~i~~~~~---~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPT---EALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCH---HHHTTCTTCCEEECCSSC
T ss_pred             CcccccchhhhccccccchhhhhhccccccCh-hHhhhhhhcccccccccccccccc---cccccccccCEEEecCCC
Confidence            8888875  47888889999999998888765 467888889999999998888775   567788888888877654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=6.9e-17  Score=156.41  Aligned_cols=146  Identities=27%  Similarity=0.376  Sum_probs=99.4

Q ss_pred             cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccCCccccccceeEeecCCC
Q psy13376         72 YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRI  151 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i  151 (417)
                      .++|+.|++++|.++.++.+..+++|+.|++++|.++.++++..+++|++|++++|.++.++++..++.++.+.++.|.+
T Consensus       218 ~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l  297 (384)
T d2omza2         218 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL  297 (384)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred             cCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCcccccccccccccccccc
Confidence            45555555555555555555555566666666666655555555566666666666666555555555666666666666


Q ss_pred             CCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccCH
Q psy13376        152 ETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIILE  225 (417)
Q Consensus       152 ~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~~  225 (417)
                      +.++.+..++++++|++++|+++++++   +..+++|+.|++++|++++++.     +..+++|++|+++.+..
T Consensus       298 ~~~~~~~~~~~l~~L~ls~n~l~~l~~---l~~l~~L~~L~L~~n~l~~l~~-----l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         298 EDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDVSS-----LANLTNINWLSAGHNQI  363 (384)
T ss_dssp             SCCGGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCC
T ss_pred             ccccccchhcccCeEECCCCCCCCCcc---cccCCCCCEEECCCCCCCCChh-----HcCCCCCCEEECCCCcC
Confidence            665556777888888888888888754   4778899999999999888753     56789999998887653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=7.1e-17  Score=132.60  Aligned_cols=116  Identities=25%  Similarity=0.340  Sum_probs=103.6

Q ss_pred             cEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccCCccccccceeEeecCCCCCc
Q psy13376         76 KAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNRIETI  154 (417)
Q Consensus        76 ~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~i~~l  154 (417)
                      +.|++++|+|+.++.+..+++|++|++++|.|+.+|. +..+++|++|++++|.|+.++++..+++|++|++++|+|+.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~   80 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS   80 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCC
Confidence            5799999999999999999999999999999999975 899999999999999999999999999999999999999988


Q ss_pred             C---CCCCCCCCcEEeccCCccCcchhh--hhhhCCCCcCEE
Q psy13376        155 E---GLDHLEKLELFNIAANRIQSLASL--VYLRRFKHLGRL  191 (417)
Q Consensus       155 ~---~l~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L  191 (417)
                      +   .+..+++|++|++++|.++..+..  .....+|+|+.+
T Consensus        81 ~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          81 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            6   367889999999999999876532  234567888776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.2e-17  Score=141.07  Aligned_cols=126  Identities=22%  Similarity=0.219  Sum_probs=111.2

Q ss_pred             cccccEEEeecCCCCCCCC-cCCCcccceEeeeCCCCCCcCCCCCCccCceeeeeCCCCCcccC--CccccccceeEeec
Q psy13376         72 YKLIKAVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKM  148 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~  148 (417)
                      ..++++|+|++|+|+.++. +..+++|+.|++++|.|+.++++..+++|++|++++|+++.++.  +..+++|++|++++
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~   96 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   96 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceecc
Confidence            5678999999999999987 57799999999999999999999999999999999999999986  67899999999999


Q ss_pred             CCCCCcC---CCCCCCCCcEEeccCCccCcchhh--hhhhCCCCcCEEeccCCCCC
Q psy13376        149 NRIETIE---GLDHLEKLELFNIAANRIQSLASL--VYLRRFKHLGRLNIERNPVC  199 (417)
Q Consensus       149 N~i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~N~l~  199 (417)
                      |+|+.++   .+..+++|++|++++|.++..+..  ..+..+|+|+.||  +.+++
T Consensus        97 N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~  150 (162)
T d1a9na_          97 NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVK  150 (162)
T ss_dssp             CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECC
T ss_pred             ccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC--CCCCC
Confidence            9999875   477899999999999999887752  2467899999987  44454

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=4.8e-16  Score=137.18  Aligned_cols=122  Identities=25%  Similarity=0.320  Sum_probs=60.9

Q ss_pred             EEEeecCCCCCCCC-cCCCcccceEeeeCCCCCC-cC--CCCCCccCceeeeeCCCCCcccC--CccccccceeEeecCC
Q psy13376         77 AVNLRIKTLRKIEN-LWMMENLVELDLSMNHIGV-IE--NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLKMNR  150 (417)
Q Consensus        77 ~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls~N~  150 (417)
                      .++.++++++.+|. +.  +++++|+|++|+|+. ++  .|.++++|++|++++|.+..++.  +..+++|++|+|++|+
T Consensus        12 ~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            44455555555543 21  345555555555543 22  14455555555555555554442  4455555555555555


Q ss_pred             CCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376        151 IETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       151 i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~  201 (417)
                      |+.++  .|.++++|++|+|++|+|+.++. ..|..+++|++++|++|++...
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCS
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCH-HHhcCCcccccccccccccccc
Confidence            55553  24555555555555555555544 3444555555555555555443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=1.4e-15  Score=134.12  Aligned_cols=156  Identities=22%  Similarity=0.274  Sum_probs=121.8

Q ss_pred             cccccCCcchhhhh-cccccEEEeecCCCCC-CCC--cCCCcccceEeeeCCCCCCcCC--CCCCccCceeeeeCCCCCc
Q psy13376         58 LLQESTNLAEKLQI-YKLIKAVNLRIKTLRK-IEN--LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDLGYNRIEQ  131 (417)
Q Consensus        58 l~~~~n~i~~l~~l-l~~L~~L~Ls~N~i~~-i~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~  131 (417)
                      +..+.++++.++.- .+++++|+|++|.|+. ++.  |..+++|++|++++|.+..++.  +..+++|++|+|++|+|+.
T Consensus        13 v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~   92 (192)
T d1w8aa_          13 VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE   92 (192)
T ss_dssp             EECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred             EEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccc
Confidence            45677788887654 7889999999999986 433  7899999999999999998863  8899999999999999999


Q ss_pred             ccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHH
Q psy13376        132 IQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGF  207 (417)
Q Consensus       132 l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  207 (417)
                      ++.  |.++++|++|+|++|+|+.++  .|..+++|++|++++|.+.......++..  .++.+.+..+.+....+    
T Consensus        93 l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~--~l~~~~l~~~~~~c~~p----  166 (192)
T d1w8aa_          93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAP----  166 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSS----
T ss_pred             cCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhh--hhhhhcccCCCeEeCCC----
Confidence            985  899999999999999999986  48899999999999999886555444332  24555666666654322    


Q ss_pred             HHhcCCCcccccCc
Q psy13376        208 AIAMVPQLQCYNNH  221 (417)
Q Consensus       208 ~~~~l~~L~~Ld~~  221 (417)
                        ..+..++.+|++
T Consensus       167 --~~l~~~~l~~L~  178 (192)
T d1w8aa_         167 --SKVRDVQIKDLP  178 (192)
T ss_dssp             --TTTTTSBGGGSC
T ss_pred             --hhhcCCEeeecC
Confidence              234555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.3e-15  Score=137.18  Aligned_cols=185  Identities=18%  Similarity=0.211  Sum_probs=146.1

Q ss_pred             ccccccCCcchhhhh----cccccEEEeecCCCCCCCC--cCCCcccceEeee-CCCCCCcCC--CCCCccCceeeeeCC
Q psy13376         57 SLLQESTNLAEKLQI----YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLS-MNHIGVIEN--LDQLVCLEKLDLGYN  127 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l----l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls-~N~l~~l~~--l~~l~~L~~L~Ls~N  127 (417)
                      .|.+++|+|+.++..    +++|++|++++|.+..++.  +..++.+..+... .+.++.++.  +.++++|++|++++|
T Consensus        36 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n  115 (284)
T d1ozna_          36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (284)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCc
Confidence            456788888877653    7788888888888887765  6677788887664 556777753  889999999999999


Q ss_pred             CCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        128 RIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       128 ~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      .+..++.  +...++|+.+++++|.|+.++  .|..+++|++|++++|+++.++. ..+..+++|+.+++++|.++.+.+
T Consensus       116 ~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~-~~f~~l~~L~~l~l~~N~l~~i~~  194 (284)
T d1ozna_         116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHP  194 (284)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECT
T ss_pred             ccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch-hhhccccccchhhhhhccccccCh
Confidence            9988764  778889999999999999986  48889999999999999999877 577899999999999999998764


Q ss_pred             ccHHHHhcCCCcccccCcccCHHHHHHHHHHHhhhhhHHHHHhHH
Q psy13376        204 VDGFAIAMVPQLQCYNNHIILEDERRTALEQHMYDVRTETLKDLM  248 (417)
Q Consensus       204 ~~~~~~~~l~~L~~Ld~~~~~~~~~~~~~~~~~~~l~~L~~l~~~  248 (417)
                         ..+..+++|++||++.+.....   ....+..+..|+.++..
T Consensus       195 ---~~f~~l~~L~~L~l~~N~i~~~---~~~~~~~~~~L~~L~l~  233 (284)
T d1ozna_         195 ---HAFRDLGRLMTLYLFANNLSAL---PTEALAPLRALQYLRLN  233 (284)
T ss_dssp             ---TTTTTCTTCCEEECCSSCCSCC---CHHHHTTCTTCCEEECC
T ss_pred             ---hHhhhhhhcccccccccccccc---cccccccccccCEEEec
Confidence               3578899999999988764322   22234445555554433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=1.4e-14  Score=136.34  Aligned_cols=215  Identities=17%  Similarity=0.185  Sum_probs=130.6

Q ss_pred             ccccc-ccceeeccccccCCCCc--hhhhHHHHHhcCCC-----CCChhhhhccccccccccccccccCCcchhhhh-cc
Q psy13376          3 IPTTV-DRIKKIGLIKDRAGDES--TLKNLAQVLQNAPA-----IINEDLLSKKGVISENLLSLLQESTNLAEKLQI-YK   73 (417)
Q Consensus         3 ip~~~-~~l~~l~l~~n~l~dl~--~L~~l~~L~~~~~~-----~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l-l~   73 (417)
                      ||..+ ++++.++++.|+++.++  .+.++.+|..+...     .+....+..+.    ....+.+++|++..++.. ..
T Consensus        25 lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~----~L~~L~l~~n~l~~l~~~~~~  100 (305)
T d1xkua_          25 VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV----KLERLYLSKNQLKELPEKMPK  100 (305)
T ss_dssp             CCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT----TCCEEECCSSCCSBCCSSCCT
T ss_pred             cCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCC----ccCEecccCCccCcCccchhh
Confidence            44433 67899999999999886  35666555544321     11111222221    112345677777766555 66


Q ss_pred             cccEEEeecCCCCCCCC----------------------------cCCCcccceEeeeCCCCCCcCCCCCCccCceeeee
Q psy13376         74 LIKAVNLRIKTLRKIEN----------------------------LWMMENLVELDLSMNHIGVIENLDQLVCLEKLDLG  125 (417)
Q Consensus        74 ~L~~L~Ls~N~i~~i~~----------------------------l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls  125 (417)
                      .+..|.+.+|.+..++.                            +..+++|+.+++++|.++.++. ..+++|+.|+++
T Consensus       101 ~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~L~~L~l~  179 (305)
T d1xkua_         101 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLD  179 (305)
T ss_dssp             TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SCCTTCSEEECT
T ss_pred             hhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc-ccCCccCEEECC
Confidence            66777776666654321                            3345566677777777666643 124667777777


Q ss_pred             CCCCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCC
Q psy13376        126 YNRIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       126 ~N~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~  201 (417)
                      +|.++..+.  +..++.+++|++++|.++.++  .+.++++|++|++++|+|+.++.  .+..+++|+.|++++|+|+.+
T Consensus       180 ~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~--~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG--GLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             TSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT--TTTTCSSCCEEECCSSCCCCC
T ss_pred             CCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccc--ccccccCCCEEECCCCccCcc
Confidence            777665543  666677777777777777664  36667777777777777777754  456677777777777777766


Q ss_pred             CCccH---HHHhcCCCcccccCcccC
Q psy13376        202 ENVDG---FAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       202 ~~~~~---~~~~~l~~L~~Ld~~~~~  224 (417)
                      +....   ......++|+.|++..++
T Consensus       258 ~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         258 GSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ChhhccCcchhcccCCCCEEECCCCc
Confidence            53111   122345666666666544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.50  E-value=3.2e-16  Score=139.24  Aligned_cols=130  Identities=35%  Similarity=0.430  Sum_probs=112.6

Q ss_pred             cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCCC-CCCccCceeeeeCCCCCcccCCccccccceeEeecCC
Q psy13376         72 YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIENL-DQLVCLEKLDLGYNRIEQIQGLDTLVNLKVLNLKMNR  150 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~l-~~l~~L~~L~Ls~N~l~~l~~~~~l~~L~~L~Ls~N~  150 (417)
                      +++|+.|++++|+|+.++++..+++|+.|++++|.|+.++++ ..+++|++|++++|+|+.++++..+++|+.|++++|+
T Consensus        47 L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~N~  126 (198)
T d1m9la_          47 LKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             TTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEESEEE
T ss_pred             ccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            899999999999999999899999999999999999999874 4557899999999999999889999999999999999


Q ss_pred             CCCcC---CCCCCCCCcEEeccCCccCcchhh---------hhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        151 IETIE---GLDHLEKLELFNIAANRIQSLASL---------VYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       151 i~~l~---~l~~l~~L~~L~Ls~N~i~~l~~~---------~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      |+.++   .+..+++|++|++++|.+......         ..+..+|+|+.||  +.+++....
T Consensus       127 i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~~~er  189 (198)
T d1m9la_         127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVDER  189 (198)
T ss_dssp             CCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGTTTTT
T ss_pred             hccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCCHHHH
Confidence            99875   478999999999999998764321         1256899999987  677766543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.50  E-value=3.1e-14  Score=133.93  Aligned_cols=129  Identities=23%  Similarity=0.333  Sum_probs=111.3

Q ss_pred             cccccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcC--CCCCCccCceeeeeCCCCCcccC--CccccccceeEee
Q psy13376         72 YKLIKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLK  147 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls  147 (417)
                      +++|+.+++++|.++.++. ..+++|+.|++++|.++...  .+.+++.+++|++++|.++.++.  +..+++|++|+|+
T Consensus       149 l~~L~~l~l~~n~l~~l~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~  227 (305)
T d1xkua_         149 MKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN  227 (305)
T ss_dssp             CTTCCEEECCSSCCCSCCS-SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred             ccccCccccccCCccccCc-ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecc
Confidence            6778999999999998865 23689999999999988664  38899999999999999998875  8899999999999


Q ss_pred             cCCCCCcC-CCCCCCCCcEEeccCCccCcchhhh-----hhhCCCCcCEEeccCCCCCCC
Q psy13376        148 MNRIETIE-GLDHLEKLELFNIAANRIQSLASLV-----YLRRFKHLGRLNIERNPVCDK  201 (417)
Q Consensus       148 ~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~l~~~~-----~l~~l~~L~~L~L~~N~l~~~  201 (417)
                      +|+|+.+| ++..+++|++|++++|+|+.++...     .....++|+.|++++|++...
T Consensus       228 ~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         228 NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             SSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             cccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            99999996 6899999999999999999986521     234678899999999998753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.3e-13  Score=122.37  Aligned_cols=148  Identities=16%  Similarity=0.124  Sum_probs=99.8

Q ss_pred             cccccEEEeec-CCCCCCCC--cCCCcccceEeeeCCCCCCcCCC---CCCccCceeeeeCCCCCcccC--Ccccc-ccc
Q psy13376         72 YKLIKAVNLRI-KTLRKIEN--LWMMENLVELDLSMNHIGVIENL---DQLVCLEKLDLGYNRIEQIQG--LDTLV-NLK  142 (417)
Q Consensus        72 l~~L~~L~Ls~-N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l~~l---~~l~~L~~L~Ls~N~l~~l~~--~~~l~-~L~  142 (417)
                      ++.++.+.+.. |.+..++.  |..+++|+.+++++|.++..+.+   ..+..+..+..+++.+..++.  |..++ .++
T Consensus        77 l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~  156 (242)
T d1xwdc1          77 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV  156 (242)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccce
Confidence            55666666543 55555443  66777777777777777766543   334445555556666776653  55544 678


Q ss_pred             eeEeecCCCCCcCC-CCCCCCCcEE-eccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccC
Q psy13376        143 VLNLKMNRIETIEG-LDHLEKLELF-NIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNN  220 (417)
Q Consensus       143 ~L~Ls~N~i~~l~~-l~~l~~L~~L-~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~  220 (417)
                      .|++++|+++.++. ....+++..+ ++++|+++.++. ..|.++++|+.|++++|+++.++.   ..+..+++|+.++.
T Consensus       157 ~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~-~~f~~l~~L~~L~Ls~N~l~~l~~---~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         157 ILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIHSLPS---YGLENLKKLRARST  232 (242)
T ss_dssp             EEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCT-TTTTTSCCCSEEECTTSCCCCCCS---SSCTTCCEEESSSE
T ss_pred             eeecccccccccccccccchhhhccccccccccccccH-HHhcCCCCCCEEECCCCcCCccCH---HHHcCCcccccCcC
Confidence            88888888887752 3344554444 578888988876 467889999999999999998876   34667777887776


Q ss_pred             ccc
Q psy13376        221 HII  223 (417)
Q Consensus       221 ~~~  223 (417)
                      ..+
T Consensus       233 ~~l  235 (242)
T d1xwdc1         233 YNL  235 (242)
T ss_dssp             ESS
T ss_pred             CCC
Confidence            544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.37  E-value=2.2e-12  Score=122.27  Aligned_cols=52  Identities=19%  Similarity=0.201  Sum_probs=32.5

Q ss_pred             CCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        161 EKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       161 ~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      ++|++|++++|+|+.+|.     .+++|+.|++++|.|+.++.       .+++|+.|+++.+.
T Consensus       284 ~~L~~L~Ls~N~l~~lp~-----~~~~L~~L~L~~N~L~~l~~-------~~~~L~~L~L~~N~  335 (353)
T d1jl5a_         284 PSLEELNVSNNKLIELPA-----LPPRLERLIASFNHLAEVPE-------LPQNLKQLHVEYNP  335 (353)
T ss_dssp             TTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCccCcccc-----ccCCCCEEECCCCcCCcccc-------ccCCCCEEECcCCc
Confidence            466777777777666653     24666677777777666654       24566666666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.37  E-value=2.3e-12  Score=122.05  Aligned_cols=189  Identities=15%  Similarity=0.201  Sum_probs=118.7

Q ss_pred             cccccccceeeccccccCCCCchhhhHHHHHhcCCCCCChhhhhccccccccccccccccCCcchhhhh--cccccEEEe
Q psy13376          3 IPTTVDRIKKIGLIKDRAGDESTLKNLAQVLQNAPAIINEDLLSKKGVISENLLSLLQESTNLAEKLQI--YKLIKAVNL   80 (417)
Q Consensus         3 ip~~~~~l~~l~l~~n~l~dl~~L~~l~~L~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~n~i~~l~~l--l~~L~~L~L   80 (417)
                      +|...++++.++++.|.++.++..-  .+|..+.   +..+.+..++.+......+.+++|.+..++..  +++|+.|++
T Consensus        53 lp~~~~~L~~L~Ls~N~l~~lp~~~--~~L~~L~---l~~n~l~~l~~lp~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l  127 (353)
T d1jl5a_          53 LPELPPHLESLVASCNSLTELPELP--QSLKSLL---VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV  127 (353)
T ss_dssp             CCSCCTTCSEEECCSSCCSSCCCCC--TTCCEEE---CCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred             CCCCCCCCCEEECCCCCCcccccch--hhhhhhh---hhhcccchhhhhccccccccccccccccccchhhhccceeecc
Confidence            5666677888888888888776431  1222222   12222222222222334556777777766655  677777777


Q ss_pred             ecCCCCCCC--------------------CcCCCcccceEeeeCCCCCCc--------------------CCCCCCccCc
Q psy13376         81 RIKTLRKIE--------------------NLWMMENLVELDLSMNHIGVI--------------------ENLDQLVCLE  120 (417)
Q Consensus        81 s~N~i~~i~--------------------~l~~l~~L~~L~Ls~N~l~~l--------------------~~l~~l~~L~  120 (417)
                      +++.++..+                    .+..++.++.+++++|.+..+                    +.+..++.|+
T Consensus       128 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~  207 (353)
T d1jl5a_         128 DNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT  207 (353)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred             ccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccccc
Confidence            776655322                    133345555666555544321                    1233456666


Q ss_pred             eeeeeCCCCCcccC----------------------------------------------------------Cccccccc
Q psy13376        121 KLDLGYNRIEQIQG----------------------------------------------------------LDTLVNLK  142 (417)
Q Consensus       121 ~L~Ls~N~l~~l~~----------------------------------------------------------~~~l~~L~  142 (417)
                      .+++++|....++.                                                          ...+++|+
T Consensus       208 ~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~  287 (353)
T d1jl5a_         208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE  287 (353)
T ss_dssp             EEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCC
Confidence            77666654322110                                                          01136899


Q ss_pred             eeEeecCCCCCcCCCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCCCCCC
Q psy13376        143 VLNLKMNRIETIEGLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVCDKEN  203 (417)
Q Consensus       143 ~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  203 (417)
                      +|++++|+|+.+|.  .+++|+.|++++|+|++++.     .+++|++|++++|+++.+|.
T Consensus       288 ~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~L~~l~~-----~~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         288 ELNVSNNKLIELPA--LPPRLERLIASFNHLAEVPE-----LPQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             EEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCCC
T ss_pred             EEECCCCccCcccc--ccCCCCEEECCCCcCCcccc-----ccCCCCEEECcCCcCCCCCc
Confidence            99999999999984  47899999999999999875     35789999999999999886

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.34  E-value=9.3e-13  Score=124.18  Aligned_cols=147  Identities=16%  Similarity=0.190  Sum_probs=99.0

Q ss_pred             cccccEEEeecCCCCCCCC--cCCCcccceEeeeCCCCCCc-C-CCCCCccCceeeeeCCCCC-cccC-Ccccccc-cee
Q psy13376         72 YKLIKAVNLRIKTLRKIEN--LWMMENLVELDLSMNHIGVI-E-NLDQLVCLEKLDLGYNRIE-QIQG-LDTLVNL-KVL  144 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~-~l~~-~~~l~~L-~~L  144 (417)
                      +++|++|++++|++..+..  +..++.|+.+++++|.+... | .+..++.++.+++++|.++ .+|. +..+..+ +.+
T Consensus       100 L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l  179 (313)
T d1ogqa_         100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM  179 (313)
T ss_dssp             CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred             ccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccc
Confidence            6777777777777776543  66677777777777766533 3 3777777777777777776 4443 4444443 566


Q ss_pred             EeecCCCCCc------------------------C-CCCCCCCCcEEeccCCccCcchhhhhhhCCCCcCEEeccCCCCC
Q psy13376        145 NLKMNRIETI------------------------E-GLDHLEKLELFNIAANRIQSLASLVYLRRFKHLGRLNIERNPVC  199 (417)
Q Consensus       145 ~Ls~N~i~~l------------------------~-~l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~l~  199 (417)
                      ++++|+++..                        + .+..+++++.+++++|.+...+.  .+..+++|+.|++++|+++
T Consensus       180 ~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~--~~~~~~~L~~L~Ls~N~l~  257 (313)
T d1ogqa_         180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             ECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccCccCeec
Confidence            6666655421                        0 13456778888888887766443  4567788888888888887


Q ss_pred             -CCCCccHHHHhcCCCcccccCcccC
Q psy13376        200 -DKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       200 -~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                       .+|.    .++.+++|++||++.+.
T Consensus       258 g~iP~----~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         258 GTLPQ----GLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             ECCCG----GGGGCTTCCEEECCSSE
T ss_pred             ccCCh----HHhCCCCCCEEECcCCc
Confidence             4554    46778888888887764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.8e-11  Score=103.73  Aligned_cols=101  Identities=17%  Similarity=0.183  Sum_probs=50.5

Q ss_pred             ceEeeeCCCCCCcC-CCCCCccCceeeeeCC-CCCcccC--CccccccceeEeecCCCCCcC--CCCCCCCCcEEeccCC
Q psy13376         98 VELDLSMNHIGVIE-NLDQLVCLEKLDLGYN-RIEQIQG--LDTLVNLKVLNLKMNRIETIE--GLDHLEKLELFNIAAN  171 (417)
Q Consensus        98 ~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--~~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~N  171 (417)
                      ..++.+++.+..++ .+..+++|++|++++| .|+.++.  |.++++|+.|++++|+|+.++  .|..+++|++|+|++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            34445555544443 2445555555555433 2555542  555555555555555555553  2455555555555555


Q ss_pred             ccCcchhhhhhhCCCCcCEEeccCCCCCC
Q psy13376        172 RIQSLASLVYLRRFKHLGRLNIERNPVCD  200 (417)
Q Consensus       172 ~i~~l~~~~~l~~l~~L~~L~L~~N~l~~  200 (417)
                      +|+.++. ..+.. .+|+.|+|++|++..
T Consensus        91 ~l~~l~~-~~~~~-~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          91 ALESLSW-KTVQG-LSLQELVLSGNPLHC  117 (156)
T ss_dssp             CCSCCCS-TTTCS-CCCCEEECCSSCCCC
T ss_pred             CCcccCh-hhhcc-ccccccccCCCcccC
Confidence            5555544 22222 245555555555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2e-11  Score=110.24  Aligned_cols=163  Identities=15%  Similarity=0.122  Sum_probs=102.4

Q ss_pred             ccccccCCcchhhhh----cccccEEEeecCCCCCC-CC--cCCCcccceEeeeC-CCCCCcCC--CCCCccCceeeeeC
Q psy13376         57 SLLQESTNLAEKLQI----YKLIKAVNLRIKTLRKI-EN--LWMMENLVELDLSM-NHIGVIEN--LDQLVCLEKLDLGY  126 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l----l~~L~~L~Ls~N~i~~i-~~--l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~  126 (417)
                      .+++++|+|..++..    +++|++|++++|.+... +.  |..+++++++.+.. |.+..++.  |.++++|+++++++
T Consensus        33 ~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~  112 (242)
T d1xwdc1          33 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN  112 (242)
T ss_dssp             EEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEES
T ss_pred             EEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccch
Confidence            345666666665442    66677777777766543 22  56666777776653 45554432  66777777777777


Q ss_pred             CCCCcccCC---ccccccceeEeecCCCCCcC--CCCCCC-CCcEEeccCCccCcchhhhhhhCCCCcCEE-eccCCCCC
Q psy13376        127 NRIEQIQGL---DTLVNLKVLNLKMNRIETIE--GLDHLE-KLELFNIAANRIQSLASLVYLRRFKHLGRL-NIERNPVC  199 (417)
Q Consensus       127 N~l~~l~~~---~~l~~L~~L~Ls~N~i~~l~--~l~~l~-~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L-~L~~N~l~  199 (417)
                      |.++.++.+   ..+..+..+..+++.+..++  .+.+++ .+..|++++|+++.++. ..+ ..+++..+ ++++|.++
T Consensus       113 ~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~-~~~-~~~~l~~~~~l~~n~l~  190 (242)
T d1xwdc1         113 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-CAF-NGTQLDELNLSDNNNLE  190 (242)
T ss_dssp             CCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-TTT-TTCCEEEEECTTCTTCC
T ss_pred             hhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccc-ccc-cchhhhccccccccccc
Confidence            777666542   33344444555556666654  344443 67888888888888765 233 34454444 56778888


Q ss_pred             CCCCccHHHHhcCCCcccccCcccC
Q psy13376        200 DKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       200 ~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      .++.   ..+..+++|+.|+++.+.
T Consensus       191 ~l~~---~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         191 ELPN---DVFHGASGPVILDISRTR  212 (242)
T ss_dssp             CCCT---TTTTTSCCCSEEECTTSC
T ss_pred             cccH---HHhcCCCCCCEEECCCCc
Confidence            8775   356778999999887765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2e-11  Score=103.52  Aligned_cols=102  Identities=20%  Similarity=0.169  Sum_probs=86.4

Q ss_pred             cccEEEeecCCCCCCCC-cCCCcccceEeeeCC-CCCCcC--CCCCCccCceeeeeCCCCCcccC--CccccccceeEee
Q psy13376         74 LIKAVNLRIKTLRKIEN-LWMMENLVELDLSMN-HIGVIE--NLDQLVCLEKLDLGYNRIEQIQG--LDTLVNLKVLNLK  147 (417)
Q Consensus        74 ~L~~L~Ls~N~i~~i~~-l~~l~~L~~L~Ls~N-~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--~~~l~~L~~L~Ls  147 (417)
                      ....++.+++++..++. +..+++|++|++++| .++.++  .|.++++|+.|++++|+|+.+++  |..+++|++|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            34568888888888754 888999999999876 599886  39999999999999999999975  8999999999999


Q ss_pred             cCCCCCcC-CCCCCCCCcEEeccCCccCc
Q psy13376        148 MNRIETIE-GLDHLEKLELFNIAANRIQS  175 (417)
Q Consensus       148 ~N~i~~l~-~l~~l~~L~~L~Ls~N~i~~  175 (417)
                      +|+|+.++ ......+|++|++++|.+.-
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CCCCcccChhhhccccccccccCCCcccC
Confidence            99999996 33334479999999999863

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.14  E-value=1.6e-11  Score=115.45  Aligned_cols=165  Identities=18%  Similarity=0.219  Sum_probs=100.1

Q ss_pred             cccccccCCcch---hh-hh--cccccEEEeec-CCCC-CCCC-cCCCcccceEeeeCCCCCCcCC--CCCCccCceeee
Q psy13376         56 LSLLQESTNLAE---KL-QI--YKLIKAVNLRI-KTLR-KIEN-LWMMENLVELDLSMNHIGVIEN--LDQLVCLEKLDL  124 (417)
Q Consensus        56 ~~l~~~~n~i~~---l~-~l--l~~L~~L~Ls~-N~i~-~i~~-l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~L  124 (417)
                      ..+++..+.+..   ++ .+  +++|++|++++ |.++ .+|. ++++++|++|+|++|++..++.  +..+..|+.+++
T Consensus        53 ~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l  132 (313)
T d1ogqa_          53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF  132 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred             EEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccc
Confidence            344555555543   22 22  77777777775 6665 4554 7777777777777777776543  667777777777


Q ss_pred             eCCCCC-cccC-CccccccceeEeecCCCCC-cC-CCCCCCCC-cEEeccCCccCcchhh--------------------
Q psy13376        125 GYNRIE-QIQG-LDTLVNLKVLNLKMNRIET-IE-GLDHLEKL-ELFNIAANRIQSLASL--------------------  179 (417)
Q Consensus       125 s~N~l~-~l~~-~~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L-~~L~Ls~N~i~~l~~~--------------------  179 (417)
                      ++|.+. .+|. +..++.|+.+++++|.++. +| .+..+..+ +.+++++|+++.....                    
T Consensus       133 ~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~  212 (313)
T d1ogqa_         133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD  212 (313)
T ss_dssp             CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEEC
T ss_pred             ccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            777765 3333 7777777777777777763 33 34444443 6666676666532210                    


Q ss_pred             --hhhhCCCCcCEEeccCCCCCCCCCccHHHHhcCCCcccccCcccC
Q psy13376        180 --VYLRRFKHLGRLNIERNPVCDKENVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       180 --~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                        ..+..+++++.+++++|.+...++    .+..+++|+.|+++.+.
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~----~~~~~~~L~~L~Ls~N~  255 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLG----KVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGG----GCCCCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccccc----ccccccccccccCccCe
Confidence              112344566666666666655433    34556777777776654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.8e-11  Score=104.32  Aligned_cols=111  Identities=18%  Similarity=0.184  Sum_probs=82.5

Q ss_pred             CCCCccCceeeeeCCCCCcccC-CccccccceeEeecCCCCCcCC----CCCCCCCcEEeccCCccCcchhhhhhhCCCC
Q psy13376        113 LDQLVCLEKLDLGYNRIEQIQG-LDTLVNLKVLNLKMNRIETIEG----LDHLEKLELFNIAANRIQSLASLVYLRRFKH  187 (417)
Q Consensus       113 l~~l~~L~~L~Ls~N~l~~l~~-~~~l~~L~~L~Ls~N~i~~l~~----l~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~  187 (417)
                      +..+..+..++..++....++. +..+++|++|+|++|+|+.+++    +..+++|+.|++++|.|++++.+..+. ..+
T Consensus        38 l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~-~~~  116 (162)
T d1koha1          38 LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GLK  116 (162)
T ss_dssp             TTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT-TCC
T ss_pred             hhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhh-ccc
Confidence            3333444444444444444443 4567888888888888888754    456899999999999999998866554 457


Q ss_pred             cCEEeccCCCCCCCC----CccHHHHhcCCCcccccCcccC
Q psy13376        188 LGRLNIERNPVCDKE----NVDGFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       188 L~~L~L~~N~l~~~~----~~~~~~~~~l~~L~~Ld~~~~~  224 (417)
                      |+.+++++||++...    .|+..++..+|+|+.||+..++
T Consensus       117 L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LDg~~v~  157 (162)
T d1koha1         117 LEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELP  157 (162)
T ss_dssp             CSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEETTEECC
T ss_pred             cceeecCCCCcCcCcccchhHHHHHHHHCCCCCEECcCCCc
Confidence            999999999998643    4677788999999999998875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=8.1e-10  Score=102.49  Aligned_cols=162  Identities=15%  Similarity=0.198  Sum_probs=90.9

Q ss_pred             cccccCCcch--hhhh---cccccEEEeecCCCCCC--CCcCCCcccceEeeeCC-CCCCc--CC-CCCCccCceeeeeC
Q psy13376         58 LLQESTNLAE--KLQI---YKLIKAVNLRIKTLRKI--ENLWMMENLVELDLSMN-HIGVI--EN-LDQLVCLEKLDLGY  126 (417)
Q Consensus        58 l~~~~n~i~~--l~~l---l~~L~~L~Ls~N~i~~i--~~l~~l~~L~~L~Ls~N-~l~~l--~~-l~~l~~L~~L~Ls~  126 (417)
                      ++++++.+..  +..+   +++|++|+++++.++..  ..+..+++|++|+++++ .+++.  .. ...+++|++|++++
T Consensus        51 LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~  130 (284)
T d2astb2          51 MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW  130 (284)
T ss_dssp             EECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred             EECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccc
Confidence            3455555532  2333   66777777777766542  23566677777777774 45532  22 34567777777777


Q ss_pred             C-CCCc--ccC-Cc-cccccceeEeecC--CCCCc--CC-CCCCCCCcEEeccCCc-cCcchhhhhhhCCCCcCEEeccC
Q psy13376        127 N-RIEQ--IQG-LD-TLVNLKVLNLKMN--RIETI--EG-LDHLEKLELFNIAANR-IQSLASLVYLRRFKHLGRLNIER  195 (417)
Q Consensus       127 N-~l~~--l~~-~~-~l~~L~~L~Ls~N--~i~~l--~~-l~~l~~L~~L~Ls~N~-i~~l~~~~~l~~l~~L~~L~L~~  195 (417)
                      + .+++  +.. +. ..++|+.|+++++  .++..  .. ...+++|++|++++|. +++ ..+..+..+++|++|++++
T Consensus       131 c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd-~~~~~l~~~~~L~~L~L~~  209 (284)
T d2astb2         131 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSR  209 (284)
T ss_dssp             CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTT
T ss_pred             ccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCc-hhhhhhcccCcCCEEECCC
Confidence            5 3432  111 22 2356777777653  23321  11 2456777777777753 544 2334566777777777777


Q ss_pred             C-CCCCCCCccHHHHhcCCCcccccCccc
Q psy13376        196 N-PVCDKENVDGFAIAMVPQLQCYNNHII  223 (417)
Q Consensus       196 N-~l~~~~~~~~~~~~~l~~L~~Ld~~~~  223 (417)
                      + .+++...   ..++.+|+|+.|+++.+
T Consensus       210 C~~i~~~~l---~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         210 CYDIIPETL---LELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCGGGG---GGGGGCTTCCEEECTTS
T ss_pred             CCCCChHHH---HHHhcCCCCCEEeeeCC
Confidence            4 3443221   23466777777777655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=6.6e-10  Score=103.10  Aligned_cols=150  Identities=16%  Similarity=0.132  Sum_probs=110.8

Q ss_pred             cccccEEEeecCCCCC--CCC-cCCCcccceEeeeCCCCCCc--CCCCCCccCceeeeeCC-CCCcc--cC-Cccccccc
Q psy13376         72 YKLIKAVNLRIKTLRK--IEN-LWMMENLVELDLSMNHIGVI--ENLDQLVCLEKLDLGYN-RIEQI--QG-LDTLVNLK  142 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~--i~~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N-~l~~l--~~-~~~l~~L~  142 (417)
                      ..+|++|+++++.++.  +.. +..+++|++|+++++.++..  ..+..+++|++|+++++ .+++.  .. +..+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            6689999999998765  233 77899999999999988742  34778999999999995 57642  23 45789999


Q ss_pred             eeEeecC-CCCCc--C-CC-CCCCCCcEEeccCC--ccCcchhhhhhhCCCCcCEEeccCCC-CCCCCCccHHHHhcCCC
Q psy13376        143 VLNLKMN-RIETI--E-GL-DHLEKLELFNIAAN--RIQSLASLVYLRRFKHLGRLNIERNP-VCDKENVDGFAIAMVPQ  214 (417)
Q Consensus       143 ~L~Ls~N-~i~~l--~-~l-~~l~~L~~L~Ls~N--~i~~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~  214 (417)
                      +|+++++ .+++-  . .+ ...++|+.|+++++  .+++..-......+++|++|++++|+ +++..   ...+..+++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~---~~~l~~~~~  201 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC---FQEFFQLNY  201 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG---GGGGGGCTT
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchh---hhhhcccCc
Confidence            9999985 45432  1 12 23578999999975  45543222244679999999999975 44322   235678999


Q ss_pred             cccccCcccC
Q psy13376        215 LQCYNNHIIL  224 (417)
Q Consensus       215 L~~Ld~~~~~  224 (417)
                      |++|+++.|.
T Consensus       202 L~~L~L~~C~  211 (284)
T d2astb2         202 LQHLSLSRCY  211 (284)
T ss_dssp             CCEEECTTCT
T ss_pred             CCEEECCCCC
Confidence            9999999875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.70  E-value=1.4e-08  Score=96.21  Aligned_cols=153  Identities=14%  Similarity=0.063  Sum_probs=110.8

Q ss_pred             cccccEEEeecCCCCCCCC---------------cCCCcccceEeeeCCCCCCcC------CCCCCccCceeeeeCCCCC
Q psy13376         72 YKLIKAVNLRIKTLRKIEN---------------LWMMENLVELDLSMNHIGVIE------NLDQLVCLEKLDLGYNRIE  130 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~---------------l~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~N~l~  130 (417)
                      .++|++|++++|.++....               ....+.|+.+++++|.++.-.      .+..++.|+.|++++|.|+
T Consensus       120 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  199 (344)
T d2ca6a1         120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR  199 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred             cccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccccc
Confidence            7889999999998764210               134678999999999887432      2567789999999999987


Q ss_pred             cc------c-CCccccccceeEeecCCCCCc------CCCCCCCCCcEEeccCCccCcchhh---hhhhC--CCCcCEEe
Q psy13376        131 QI------Q-GLDTLVNLKVLNLKMNRIETI------EGLDHLEKLELFNIAANRIQSLASL---VYLRR--FKHLGRLN  192 (417)
Q Consensus       131 ~l------~-~~~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~Ls~N~i~~l~~~---~~l~~--l~~L~~L~  192 (417)
                      .-      . .+..+++|+.|++++|.++..      ..+..+++|++|++++|.|++....   ..+..  .+.|++|+
T Consensus       200 ~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~  279 (344)
T d2ca6a1         200 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR  279 (344)
T ss_dssp             HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEE
T ss_pred             ccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEE
Confidence            42      2 367788999999999998653      2467889999999999999874331   12232  46799999


Q ss_pred             ccCCCCCCCCCcc--HHHHhcCCCcccccCcccC
Q psy13376        193 IERNPVCDKENVD--GFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       193 L~~N~l~~~~~~~--~~~~~~l~~L~~Ld~~~~~  224 (417)
                      +++|.|+......  .....++++|+.|+++.+.
T Consensus       280 ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         280 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             CCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            9999987632211  1122468899999887655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.65  E-value=6.3e-09  Score=98.65  Aligned_cols=181  Identities=19%  Similarity=0.148  Sum_probs=126.3

Q ss_pred             cccccEEEeecCCCCCCCC------cCCCcccceEeeeCCCCCCcC------C---------CCCCccCceeeeeCCCCC
Q psy13376         72 YKLIKAVNLRIKTLRKIEN------LWMMENLVELDLSMNHIGVIE------N---------LDQLVCLEKLDLGYNRIE  130 (417)
Q Consensus        72 l~~L~~L~Ls~N~i~~i~~------l~~l~~L~~L~Ls~N~l~~l~------~---------l~~l~~L~~L~Ls~N~l~  130 (417)
                      .++|+.|++++|.++....      +...++|++|++++|.++...      .         ....+.|+.+++++|.++
T Consensus        92 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1          92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccc
Confidence            6789999999999987421      456789999999999886321      0         235678999999999987


Q ss_pred             ccc-----C-CccccccceeEeecCCCCCc-------CCCCCCCCCcEEeccCCccCcchh--h-hhhhCCCCcCEEecc
Q psy13376        131 QIQ-----G-LDTLVNLKVLNLKMNRIETI-------EGLDHLEKLELFNIAANRIQSLAS--L-VYLRRFKHLGRLNIE  194 (417)
Q Consensus       131 ~l~-----~-~~~l~~L~~L~Ls~N~i~~l-------~~l~~l~~L~~L~Ls~N~i~~l~~--~-~~l~~l~~L~~L~L~  194 (417)
                      .-.     . +...+.|++|++++|.|+.-       ..+..+++|++|++++|.++....  + ..+..+++|++|+++
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence            432     1 55678999999999998752       247788999999999999876321  1 356789999999999


Q ss_pred             CCCCCCCCCccH-HHHhc--CCCcccccCcccCHHHH--HHHHHHHhhhhhHHHHHhHHHHHH
Q psy13376        195 RNPVCDKENVDG-FAIAM--VPQLQCYNNHIILEDER--RTALEQHMYDVRTETLKDLMVQRE  252 (417)
Q Consensus       195 ~N~l~~~~~~~~-~~~~~--l~~L~~Ld~~~~~~~~~--~~~~~~~~~~l~~L~~l~~~~~~~  252 (417)
                      +|++++...... ..+..  .+.|+.||++.+.....  ...........+.|+.++...+..
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            999986432111 12232  46799999988764321  111222222345566666655554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=3.1e-10  Score=110.60  Aligned_cols=96  Identities=25%  Similarity=0.252  Sum_probs=73.4

Q ss_pred             ccccccCCcchhhhh-----cccccEEEeecCCCCCCC------CcCCCcccceEeeeCCCCCCcC------CCC-CCcc
Q psy13376         57 SLLQESTNLAEKLQI-----YKLIKAVNLRIKTLRKIE------NLWMMENLVELDLSMNHIGVIE------NLD-QLVC  118 (417)
Q Consensus        57 ~l~~~~n~i~~l~~l-----l~~L~~L~Ls~N~i~~i~------~l~~l~~L~~L~Ls~N~l~~l~------~l~-~l~~  118 (417)
                      .++++.++|+.....     ++++++|+|++|+|+...      .+..+++|++|+|++|.|+..+      .+. ..++
T Consensus         6 ~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~   85 (460)
T d1z7xw1           6 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK   85 (460)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCC
T ss_pred             EEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCC
Confidence            457888888764322     899999999999987532      1578899999999999987422      232 3457


Q ss_pred             CceeeeeCCCCCccc-----C-CccccccceeEeecCCCC
Q psy13376        119 LEKLDLGYNRIEQIQ-----G-LDTLVNLKVLNLKMNRIE  152 (417)
Q Consensus       119 L~~L~Ls~N~l~~l~-----~-~~~l~~L~~L~Ls~N~i~  152 (417)
                      |++|++++|++++..     . +..+++|++|++++|.|+
T Consensus        86 L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          86 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            999999999997543     2 677889999999999875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.2e-09  Score=92.68  Aligned_cols=120  Identities=23%  Similarity=0.234  Sum_probs=78.0

Q ss_pred             ccEEEeecCCCCCCCCcCCCcccceEeeeCCCCCCcCC-CCCCccCceeeeeCCCCCcccC----CccccccceeEeecC
Q psy13376         75 IKAVNLRIKTLRKIENLWMMENLVELDLSMNHIGVIEN-LDQLVCLEKLDLGYNRIEQIQG----LDTLVNLKVLNLKMN  149 (417)
Q Consensus        75 L~~L~Ls~N~i~~i~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~l~~L~~L~Ls~N  149 (417)
                      .+.|++++.  ...+.+..+..+..++..++....++. +..+++|++|+|++|+|+.+++    +..+++|+.|+|++|
T Consensus        24 ~~~Ldls~l--~~~~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N  101 (162)
T d1koha1          24 QQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN  101 (162)
T ss_dssp             SCCBCCCCC--SSCTTTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS
T ss_pred             hCeeecccC--CCCchhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC
Confidence            445555443  333344444444444444444443433 4568889999999999988764    456889999999999


Q ss_pred             CCCCcCCC--CCCCCCcEEeccCCccCcchh------hhhhhCCCCcCEEeccCCCC
Q psy13376        150 RIETIEGL--DHLEKLELFNIAANRIQSLAS------LVYLRRFKHLGRLNIERNPV  198 (417)
Q Consensus       150 ~i~~l~~l--~~l~~L~~L~Ls~N~i~~l~~------~~~l~~l~~L~~L~L~~N~l  198 (417)
                      .|++++.+  ....+|+.|++++|.+.....      ...+..+|+|+.||  |.++
T Consensus       102 ~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         102 ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET--TEEC
T ss_pred             ccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC--cCCC
Confidence            99988642  234568999999998875321      12356789999886  4444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.5e-07  Score=90.98  Aligned_cols=152  Identities=14%  Similarity=0.149  Sum_probs=99.1

Q ss_pred             ccccEEEeecCCCCCCC--C-cCCCcccceEeeeCCCCCCcC------CCCCCccCceeeeeCCCCCccc------CCc-
Q psy13376         73 KLIKAVNLRIKTLRKIE--N-LWMMENLVELDLSMNHIGVIE------NLDQLVCLEKLDLGYNRIEQIQ------GLD-  136 (417)
Q Consensus        73 ~~L~~L~Ls~N~i~~i~--~-l~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~N~l~~l~------~~~-  136 (417)
                      .+|+.|++++|+++...  . +..+++++.|+|++|.++...      .+..+++|++|+|++|.|+..+      .+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46889999999998743  2 667889999999999988432      2678899999999999986422      122 


Q ss_pred             cccccceeEeecCCCCCcC------CCCCCCCCcEEeccCCccCcchhhhh---hh-CCCCcCEEeccCCCCCCCCC-cc
Q psy13376        137 TLVNLKVLNLKMNRIETIE------GLDHLEKLELFNIAANRIQSLASLVY---LR-RFKHLGRLNIERNPVCDKEN-VD  205 (417)
Q Consensus       137 ~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~Ls~N~i~~l~~~~~---l~-~l~~L~~L~L~~N~l~~~~~-~~  205 (417)
                      ..++|++|+|++|+++...      .+..+++|++|++++|.|++......   +. ..............+..... ..
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            2357999999999998642      47788999999999999876432111   11 22233444444444332211 01


Q ss_pred             HHHHhcCCCcccccCcccC
Q psy13376        206 GFAIAMVPQLQCYNNHIIL  224 (417)
Q Consensus       206 ~~~~~~l~~L~~Ld~~~~~  224 (417)
                      ...+...+.++.++.+.+.
T Consensus       162 ~~~l~~~~~~~~~~ls~~~  180 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNND  180 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSB
T ss_pred             ccccccccccccccccccc
Confidence            1233445566666555444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.69  E-value=4.3e-05  Score=64.04  Aligned_cols=111  Identities=12%  Similarity=0.060  Sum_probs=68.0

Q ss_pred             CccCceeeeeCC-CCCc--cc----CCccccccceeEeecCCCCCc--C----CCCCCCCCcEEeccCCccCcchh---h
Q psy13376        116 LVCLEKLDLGYN-RIEQ--IQ----GLDTLVNLKVLNLKMNRIETI--E----GLDHLEKLELFNIAANRIQSLAS---L  179 (417)
Q Consensus       116 l~~L~~L~Ls~N-~l~~--l~----~~~~l~~L~~L~Ls~N~i~~l--~----~l~~l~~L~~L~Ls~N~i~~l~~---~  179 (417)
                      .+.|++|+|+++ .++.  +.    .+...+.|++|+|++|.++.-  .    .+...+.|++|++++|.|++-..   .
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            456666666653 3432  11    144555677777777766532  1    24456778888888888876322   1


Q ss_pred             hhhhCCCCcCEEeccCCCCCCCCCc----cHHHHhcCCCcccccCcccCHH
Q psy13376        180 VYLRRFKHLGRLNIERNPVCDKENV----DGFAIAMVPQLQCYNNHIILED  226 (417)
Q Consensus       180 ~~l~~l~~L~~L~L~~N~l~~~~~~----~~~~~~~l~~L~~Ld~~~~~~~  226 (417)
                      ..+...+.|++|++++|.+..+..-    -...+...++|+.|+++.....
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~~  144 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  144 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCch
Confidence            2456667888888888877665321    1224556788888888777644

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.62  E-value=1.2e-05  Score=67.69  Aligned_cols=103  Identities=18%  Similarity=0.213  Sum_probs=67.4

Q ss_pred             CcccceEeeeCC-CCCCc--C----CCCCCccCceeeeeCCCCCcc--cC----CccccccceeEeecCCCCCcC-----
Q psy13376         94 MENLVELDLSMN-HIGVI--E----NLDQLVCLEKLDLGYNRIEQI--QG----LDTLVNLKVLNLKMNRIETIE-----  155 (417)
Q Consensus        94 l~~L~~L~Ls~N-~l~~l--~----~l~~l~~L~~L~Ls~N~l~~l--~~----~~~l~~L~~L~Ls~N~i~~l~-----  155 (417)
                      .++|++|+|+++ .++.-  .    .+...++|++|++++|.++.-  ..    +...+.|++|+|++|.|+.-.     
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            456667777653 34421  1    255666777778877777532  12    445677888888888877532     


Q ss_pred             -CCCCCCCCcEEeccCCccCcchh------hhhhhCCCCcCEEeccCC
Q psy13376        156 -GLDHLEKLELFNIAANRIQSLAS------LVYLRRFKHLGRLNIERN  196 (417)
Q Consensus       156 -~l~~l~~L~~L~Ls~N~i~~l~~------~~~l~~l~~L~~L~L~~N  196 (417)
                       .+...++|++|++++|.+..+..      ...+...++|+.|+++.+
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence             46777889999998887665421      134566788999988665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.01  E-value=0.00011  Score=61.12  Aligned_cols=91  Identities=16%  Similarity=0.128  Sum_probs=47.2

Q ss_pred             ccccccceeEeecCCCCCcC------CCCCCCCCcEEeccCCccCcchh---hhhhhCCCCcCEEec--cCCCCCCCCC-
Q psy13376        136 DTLVNLKVLNLKMNRIETIE------GLDHLEKLELFNIAANRIQSLAS---LVYLRRFKHLGRLNI--ERNPVCDKEN-  203 (417)
Q Consensus       136 ~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L--~~N~l~~~~~-  203 (417)
                      ...++|++|++++|.++.-.      .+...++++.+++++|.+++-..   ...+...++|+.++|  ++|++.+... 
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            34455555555555554321      23445566677777766654221   124455666766544  3455543211 


Q ss_pred             ccHHHHhcCCCcccccCcccCHH
Q psy13376        204 VDGFAIAMVPQLQCYNNHIILED  226 (417)
Q Consensus       204 ~~~~~~~~l~~L~~Ld~~~~~~~  226 (417)
                      .-...+...++|+.|++......
T Consensus       123 ~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCcCEEeCcCCCCc
Confidence            01124456777887777665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.98  E-value=0.00026  Score=58.73  Aligned_cols=106  Identities=20%  Similarity=0.129  Sum_probs=76.9

Q ss_pred             CCCcccceEeeeC-CCCCCcC------CCCCCccCceeeeeCCCCCccc------CCccccccceeEeecCCCCCc----
Q psy13376         92 WMMENLVELDLSM-NHIGVIE------NLDQLVCLEKLDLGYNRIEQIQ------GLDTLVNLKVLNLKMNRIETI----  154 (417)
Q Consensus        92 ~~l~~L~~L~Ls~-N~l~~l~------~l~~l~~L~~L~Ls~N~l~~l~------~~~~l~~L~~L~Ls~N~i~~l----  154 (417)
                      .+.++|++|++++ +.++.-.      .+...++|++|++++|.++.-.      .+...+.++.+++++|.++.-    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4568999999997 4576321      2668889999999999987432      156678999999999988643    


Q ss_pred             --CCCCCCCCCcEEec--cCCccCcchh---hhhhhCCCCcCEEeccCCC
Q psy13376        155 --EGLDHLEKLELFNI--AANRIQSLAS---LVYLRRFKHLGRLNIERNP  197 (417)
Q Consensus       155 --~~l~~l~~L~~L~L--s~N~i~~l~~---~~~l~~l~~L~~L~L~~N~  197 (417)
                        ..+...++|+.++|  ++|.+.+-..   ...+...++|+.|+++.+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence              24677888887555  5677766321   1245678999999997664