Psyllid ID: psy13386
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 714 | 2.2.26 [Sep-21-2011] | |||||||
| A8CVX7 | 778 | Tubulin polyglutamylase t | yes | N/A | 0.599 | 0.550 | 0.423 | 1e-104 | |
| A4Q9E8 | 822 | Tubulin polyglutamylase T | yes | N/A | 0.596 | 0.518 | 0.426 | 1e-104 | |
| Q8N841 | 843 | Tubulin polyglutamylase T | yes | N/A | 0.628 | 0.532 | 0.410 | 1e-102 | |
| A6NNM8 | 815 | Tubulin polyglutamylase T | no | N/A | 0.602 | 0.527 | 0.427 | 1e-99 | |
| A4Q9F6 | 804 | Tubulin polyglutamylase T | no | N/A | 0.689 | 0.611 | 0.394 | 4e-99 | |
| Q6ZT98 | 887 | Tubulin polyglutamylase T | no | N/A | 0.582 | 0.468 | 0.368 | 1e-76 | |
| A4Q9F0 | 912 | Tubulin polyglutamylase T | no | N/A | 0.570 | 0.446 | 0.372 | 2e-76 | |
| Q23MT7 | 1189 | Probable beta-tubulin pol | N/A | N/A | 0.504 | 0.302 | 0.361 | 1e-70 | |
| Q80UG8 | 1193 | Tubulin polyglutamylase T | no | N/A | 0.418 | 0.250 | 0.372 | 2e-58 | |
| A4Q9F4 | 727 | Tubulin polyglutamylase T | no | N/A | 0.382 | 0.375 | 0.411 | 3e-57 |
| >sp|A8CVX7|TTLL6_DANRE Tubulin polyglutamylase ttll6 OS=Danio rerio GN=ttll6 PE=2 SV=1 | Back alignment and function desciption |
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Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/437 (42%), Positives = 278/437 (63%), Gaps = 9/437 (2%)
Query: 47 ICLDLCSYELVGRVARQCGMTVVDDKSLWDVLWSDPCIGPDTHRRMKRFQRTNHFPLIME 106
I L C YE V R AR+ G+ + W + W+D + D MKR+Q+ NHFP + E
Sbjct: 56 INLTNCKYESVRRAARRYGIREAAEGEDWTLYWTDCSVSLDRVMDMKRYQKINHFPGMNE 115
Query: 107 LCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREVHAFLTSKK-ATVIVKPDNGSNG 165
+CRK+LLA+N+N+M +P +YN FP+TW LP D + A+ +KK T I KPD+G G
Sbjct: 116 ICRKDLLARNMNRMLKLFPKEYNIFPRTWCLPADYSDFQAYTRAKKHKTFICKPDSGCQG 175
Query: 166 LGISLIRNLRHLSQEQNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIYVHKDGI 225
GI L ++ + + + ICQ Y++ PF+IDG KFD+R+Y L+TS DP R++++ +G+
Sbjct: 176 RGIYLTKSSKDI--RPGEHMICQVYMSKPFIIDGFKFDLRIYVLVTSCDPFRVFMYDEGL 233
Query: 226 VRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGSKRKISTINQWFCRMGYD 285
VRF T Y P NL + MHLTNY++NKHS +F+ DE+ GSKRK+S+ + M YD
Sbjct: 234 VRFCTTHYTEPTVSNLEDVCMHLTNYAINKHSENFVRDEDTGSKRKLSSFKKHMEDMSYD 293
Query: 286 TDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLGFDILLDDTLNPYVLE 345
T+ +W+ I+D I+KT++SAHP +K Y + FP H +ACF++LGFD+LLD L P++LE
Sbjct: 294 TEKLWTDIEDAIIKTLISAHPILKHNYQTCFPNHASGSACFEILGFDVLLDRRLKPWLLE 353
Query: 346 VNHSPSFYTDTEIDVEIKEQVLRDTFILCNLNSSIKRKVLQEERLEVQRRLFKRPERE-E 404
VNHSPSF TD+ +D E+K+ +L DT +L NL + +RK+ +EE+ V+ RL + RE
Sbjct: 354 VNHSPSFTTDSRLDREVKDSLLYDTLVLINLGACDRRKITEEEKRRVKERLQQNRSREAR 413
Query: 405 DEEDRQ---GCKERQWAWERAHMGNFRLLYPCQDGDKYDSMCRAIESASYYKDTFSSNMR 461
+EE RQ E +E HMG FR ++P G+KY+ + S+S +++T +S R
Sbjct: 414 NEEPRQSQAASMELMQKYEAKHMGGFRRIFPRDGGEKYEKYFQ--HSSSLFQETAASKAR 471
Query: 462 SMLGRAHRQDIDMRRDN 478
R Q++ ++++
Sbjct: 472 EECARQQLQELRLKQEQ 488
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Polyglutamylase which preferentially modifies alpha-tubulin. Mediates tubulin polyglutamylation in cilia. Involved in the side-chain elongation step of the polyglutamylation reaction rather than in the initiation step. Required for formation of olfactory cilia. Danio rerio (taxid: 7955) EC: 6EC: .EC: -EC: .EC: -EC: .EC: - |
| >sp|A4Q9E8|TTLL6_MOUSE Tubulin polyglutamylase TTLL6 OS=Mus musculus GN=Ttll6 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8N841|TTLL6_HUMAN Tubulin polyglutamylase TTLL6 OS=Homo sapiens GN=TTLL6 PE=1 SV=2 | Back alignment and function description |
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| >sp|A6NNM8|TTL13_HUMAN Tubulin polyglutamylase TTLL13 OS=Homo sapiens GN=TTLL13 PE=2 SV=2 | Back alignment and function description |
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| >sp|A4Q9F6|TTL13_MOUSE Tubulin polyglutamylase TTLL13 OS=Mus musculus GN=Ttll13 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6ZT98|TTLL7_HUMAN Tubulin polyglutamylase TTLL7 OS=Homo sapiens GN=TTLL7 PE=2 SV=2 | Back alignment and function description |
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| >sp|A4Q9F0|TTLL7_MOUSE Tubulin polyglutamylase TTLL7 OS=Mus musculus GN=Ttll7 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q23MT7|TTL6A_TETTS Probable beta-tubulin polyglutamylase OS=Tetrahymena thermophila (strain SB210) GN=Ttll6a PE=4 SV=1 | Back alignment and function description |
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| >sp|Q80UG8|TTLL4_MOUSE Tubulin polyglutamylase TTLL4 OS=Mus musculus GN=Ttll4 PE=2 SV=3 | Back alignment and function description |
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| >sp|A4Q9F4|TTL11_MOUSE Tubulin polyglutamylase TTLL11 OS=Mus musculus GN=Ttll11 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 714 | ||||||
| 383852141 | 1115 | PREDICTED: uncharacterized protein LOC10 | 0.614 | 0.393 | 0.440 | 1e-115 | |
| 350423508 | 1118 | PREDICTED: hypothetical protein LOC10074 | 0.598 | 0.381 | 0.453 | 1e-115 | |
| 340710270 | 1119 | PREDICTED: hypothetical protein LOC10065 | 0.633 | 0.403 | 0.44 | 1e-115 | |
| 328789690 | 1105 | PREDICTED: tubulin polyglutamylase TTLL1 | 0.648 | 0.419 | 0.423 | 1e-115 | |
| 357610611 | 656 | putative tubulin tyrosine ligase-like fa | 0.612 | 0.666 | 0.453 | 1e-112 | |
| 312379503 | 885 | hypothetical protein AND_08633 [Anophele | 0.599 | 0.483 | 0.449 | 1e-112 | |
| 307212005 | 1087 | Tubulin polyglutamylase ttll6 [Harpegnat | 0.637 | 0.418 | 0.438 | 1e-111 | |
| 322784896 | 828 | hypothetical protein SINV_80206 [Solenop | 0.598 | 0.515 | 0.442 | 1e-111 | |
| 347968213 | 888 | AGAP002623-PA [Anopheles gambiae str. PE | 0.610 | 0.490 | 0.430 | 1e-110 | |
| 301605327 | 765 | PREDICTED: tubulin polyglutamylase TTLL1 | 0.651 | 0.607 | 0.426 | 1e-109 |
| >gi|383852141|ref|XP_003701587.1| PREDICTED: uncharacterized protein LOC100876864 [Megachile rotundata] | Back alignment and taxonomy information |
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Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/477 (44%), Positives = 302/477 (63%), Gaps = 38/477 (7%)
Query: 27 LITGDSDLSSKKSRVRVVA------------TICLDLCSYELVGRVARQCGMTVVDDKSL 74
L GD+D S+K +A TIC C Y++V RVA + GM V + S
Sbjct: 405 LSFGDTDADSRKDTADGIASKTKRKRKRRCLTICTSNCKYDVVRRVAARFGMKEVTEDSS 464
Query: 75 WDVLWSDPCIGPDTHRRMKRFQRTNHFPLIMELCRKNLLAKNLNQMKIQYPNDYNFFPQT 134
W++ W+D + + + MKR+Q+ NHFP + E+CRK+LLA+NLN+M +P DYNFFP+T
Sbjct: 465 WNLYWTDLSVSVERAKDMKRYQKVNHFPGMTEICRKDLLARNLNRMLKLFPKDYNFFPKT 524
Query: 135 WILPRDNREVHAFLTSKKA-TVIVKPDNGSNGLGISLIRNLRHLSQEQNRNYICQEYIAN 193
W P D+ E A+ +++ T I+KPD G G GI L RNL+ + + ICQ Y+A
Sbjct: 525 WCFPADHGEAMAYAKLRRSKTFIIKPDTGCQGRGIYLTRNLKDVKPSER--MICQVYVAR 582
Query: 194 PFLIDGLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSV 253
PFL+DG KFD+R+YTLITS DP+R+YV+ DG+ RFAT +Y+ P N +N +MHLTNY+V
Sbjct: 583 PFLVDGYKFDLRIYTLITSCDPLRVYVYNDGLARFATSRYKEPTGHNTSNVFMHLTNYAV 642
Query: 254 NKHSISFIHDEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYN 313
NKHS ++ D+E+GSKRKIST+N+W + D +W +ID++I+KT+L+A+P +K Y+
Sbjct: 643 NKHSRMYVIDDEMGSKRKISTLNKWLKLKEINVDDLWRKIDEIIIKTILAAYPILKHSYH 702
Query: 314 SVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDTFIL 373
+ FP H+ ACF+LLGFD+LLD L PY+LEVNHSPSF+TD +ID +IKE +L DTF +
Sbjct: 703 TCFPTHDKTYACFELLGFDVLLDWKLKPYLLEVNHSPSFHTDAQIDKDIKEGLLTDTFEM 762
Query: 374 CNLNSSIKRKVLQEERLEVQRRLFK-----------------RPEREEDEEDRQGCKERQ 416
NL K+K+++E+R V+ RL + +P++ E++ ++Q
Sbjct: 763 LNLQQCDKKKIIEEDRKRVRDRLLQGITSKDSSLNDSTIGPTKPDKLEEDH-----LQKQ 817
Query: 417 WAWERAHMGNFRLLYPCQDGDKYDSMCRAIESASYYKDTFSSNMRSMLGRAHRQDID 473
WE HMGNFR +YPC D DKY + S Y+DT +S R R +++ D
Sbjct: 818 LKWEDDHMGNFRRIYPCSDSDKYQPFFKQT-GISAYQDTIASRAREEAARTQKEEND 873
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Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350423508|ref|XP_003493503.1| PREDICTED: hypothetical protein LOC100747024 [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|340710270|ref|XP_003393716.1| PREDICTED: hypothetical protein LOC100651151 [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|328789690|ref|XP_623904.2| PREDICTED: tubulin polyglutamylase TTLL13-like [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|357610611|gb|EHJ67062.1| putative tubulin tyrosine ligase-like family, member 6 [Danaus plexippus] | Back alignment and taxonomy information |
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| >gi|312379503|gb|EFR25755.1| hypothetical protein AND_08633 [Anopheles darlingi] | Back alignment and taxonomy information |
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| >gi|307212005|gb|EFN87900.1| Tubulin polyglutamylase ttll6 [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|322784896|gb|EFZ11676.1| hypothetical protein SINV_80206 [Solenopsis invicta] | Back alignment and taxonomy information |
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| >gi|347968213|ref|XP_563530.3| AGAP002623-PA [Anopheles gambiae str. PEST] gi|333468110|gb|EAL40878.3| AGAP002623-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
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| >gi|301605327|ref|XP_002932304.1| PREDICTED: tubulin polyglutamylase TTLL13-like [Xenopus (Silurana) tropicalis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 714 | ||||||
| FB|FBgn0039501 | 720 | CG5987 [Drosophila melanogaste | 0.521 | 0.516 | 0.454 | 2.1e-103 | |
| ZFIN|ZDB-GENE-080107-1 | 778 | ttll6 "tubulin tyrosine ligase | 0.753 | 0.691 | 0.370 | 2.5e-100 | |
| UNIPROTKB|E2RTL2 | 888 | TTLL6 "Uncharacterized protein | 0.610 | 0.490 | 0.417 | 5.3e-100 | |
| UNIPROTKB|A6NNM8 | 815 | TTLL13 "Tubulin polyglutamylas | 0.648 | 0.568 | 0.407 | 6e-99 | |
| RGD|1311922 | 820 | Ttll6 "tubulin tyrosine ligase | 0.871 | 0.758 | 0.346 | 1e-98 | |
| MGI|MGI:2683461 | 822 | Ttll6 "tubulin tyrosine ligase | 0.679 | 0.590 | 0.392 | 2e-98 | |
| UNIPROTKB|E1BIV0 | 837 | TTLL6 "Uncharacterized protein | 0.675 | 0.575 | 0.388 | 2e-98 | |
| UNIPROTKB|F1P1K7 | 525 | TTLL13 "Uncharacterized protei | 0.679 | 0.923 | 0.385 | 5.8e-98 | |
| MGI|MGI:1920845 | 804 | Ttll13 "tubulin tyrosine ligas | 0.712 | 0.633 | 0.384 | 5.8e-98 | |
| UNIPROTKB|G3N2U5 | 847 | TTLL6 "Uncharacterized protein | 0.852 | 0.719 | 0.344 | 2.5e-97 |
| FB|FBgn0039501 CG5987 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 928 (331.7 bits), Expect = 2.1e-103, Sum P(3) = 2.1e-103
Identities = 171/376 (45%), Positives = 253/376 (67%)
Query: 25 TSLITGDSDLSSKKSRVRVVATICLDLCSYELVGRVARQCGMTVVDDKSLWDVLWSDPCI 84
T ++ ++ ++ +TIC+ Y ++G++++ G +V + +W++LWSD
Sbjct: 126 TRVLNPPMNVDEERPASETKSTICVSNSRYAMIGKISKTLGYKLVKESKMWNILWSDSFP 185
Query: 85 GPDTHRRMKRFQRTNHFPLIMELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNREV 144
G + + MKRFQ+ NHFP ++E+CRK+LL++NLN+M +P DY FP+TW+LP D +
Sbjct: 186 GVELFKNMKRFQQINHFPGMIEICRKDLLSRNLNRMLKIFPQDYKIFPKTWMLPADYGDA 245
Query: 145 HAFLTSKKATVIVKPDNGSNGLGISLIRNLRHLSQEQNRNYICQEYIANPFLIDGLKFDM 204
+ + K T I+KPD+G+ G GI L +L+ + + ICQ YI P LIDG KFD+
Sbjct: 246 MNYALNHKRTFILKPDSGAQGRGIWLTNDLKTIGPHER--LICQTYIHRPLLIDGYKFDL 303
Query: 205 RVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISF--IH 262
RVYTLITS DP+RI+V+ +G+ RFAT KY P GN + YMHLTNYSVNK + +
Sbjct: 304 RVYTLITSVDPLRIFVYNEGLARFATNKYVEPTPGNANDLYMHLTNYSVNKRNSHYELCD 363
Query: 263 DEEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYM 322
+++ GSKRK+S IN W R YD + WS +DDVI+KTVLSA P +K Y++ FP H+ +
Sbjct: 364 NDDCGSKRKLSAINNWMRRHNYDVEEFWSNVDDVIIKTVLSAWPVLKHNYHACFPGHDKI 423
Query: 323 TACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDTFILCNLNSSIKR 382
ACF++LGFDIL+D L PY+LEVNHSPSF+T+ ++D E+K ++RDT L + + KR
Sbjct: 424 QACFEILGFDILVDWKLKPYILEVNHSPSFHTNEQVDREVKRPLIRDTLNLVSTVLADKR 483
Query: 383 KVLQEERLEVQRRLFK 398
++L+E+R V++RL K
Sbjct: 484 QILKEDRKRVKQRLLK 499
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| ZFIN|ZDB-GENE-080107-1 ttll6 "tubulin tyrosine ligase-like family, member 6" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RTL2 TTLL6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A6NNM8 TTLL13 "Tubulin polyglutamylase TTLL13" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| RGD|1311922 Ttll6 "tubulin tyrosine ligase-like family, member 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:2683461 Ttll6 "tubulin tyrosine ligase-like family, member 6" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BIV0 TTLL6 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P1K7 TTLL13 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| MGI|MGI:1920845 Ttll13 "tubulin tyrosine ligase-like family, member 13" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G3N2U5 TTLL6 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2.25 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.3.2 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 714 | |||
| pfam03133 | 291 | pfam03133, TTL, Tubulin-tyrosine ligase family | 2e-81 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 8e-07 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 2e-05 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 1e-04 | |
| PRK13808 | 333 | PRK13808, PRK13808, adenylate kinase; Provisional | 1e-04 | |
| COG0810 | 244 | COG0810, TonB, Periplasmic protein TonB, links inn | 0.002 | |
| pfam13535 | 183 | pfam13535, ATP-grasp_4, ATP-grasp domain | 0.002 |
| >gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family | Back alignment and domain information |
|---|
Score = 260 bits (666), Expect = 2e-81
Identities = 109/285 (38%), Positives = 168/285 (58%), Gaps = 13/285 (4%)
Query: 91 RMKRFQRTNHFPLIMELCRKNLLAKNLNQMKIQYPNDYNFFPQTWILPRDNRE-VHAFLT 149
Q NHFP E+ RK+LL KN+ + + ++F P+T+ILP D E V F
Sbjct: 4 DEPYHQALNHFPGSYEITRKDLLWKNIKRQPCDFGRKFDFLPRTFILPTDLAEFVDYFED 63
Query: 150 SKKATVIVKPDNGSNGLGISLIRNLRHLSQ-EQNRNYICQEYIANPFLIDGLKFDMRVYT 208
+++ T IVKP + G GI + +L + + Q+R + Q+YI P LIDG KFD+R+Y
Sbjct: 64 NERNTWIVKPSASARGRGIRITNDLSQILKQIQSRPLVVQKYIERPLLIDGRKFDIRLYV 123
Query: 209 LITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVNKHSISFIHDEEVGS 268
L+TS +P+R+YV+++G++RFA+VKY P +L + MHLTNYS+ K S S D +
Sbjct: 124 LVTSVNPLRVYVYREGLLRFASVKYS-PSVSDLDDVEMHLTNYSIQKKSSSLNEDYNEPN 182
Query: 269 KRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSA--HPNIKTMYNSVFPRHNYMTACF 326
K S N W D + +W I+ +I+KT+L+A + + P +N CF
Sbjct: 183 GHKWSLFNFWKYLEEKDKEEIWLEIESIIIKTILAAEVEASRLNVQ----PLYN----CF 234
Query: 327 QLLGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDTF 371
+L GFD ++D+ L P++LEVN SPS ++ T++D +KEQ++ D
Sbjct: 235 ELYGFDFMIDENLKPWLLEVNASPSLHSTTKLDARLKEQLIDDVL 279
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Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyzes the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis. Bacterial homologs of TTL are predicted to form peptide tags. Some of these are fused to a 2-oxoglutarate Fe(II)-dependent dioxygenase domain. Length = 291 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
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| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
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| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
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| >gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional | Back alignment and domain information |
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| >gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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| >gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 714 | |||
| KOG2156|consensus | 662 | 100.0 | ||
| PF03133 | 292 | TTL: Tubulin-tyrosine ligase family; InterPro: IPR | 100.0 | |
| KOG2158|consensus | 565 | 100.0 | ||
| KOG2157|consensus | 497 | 100.0 | ||
| KOG2155|consensus | 631 | 99.97 | ||
| PF14398 | 262 | ATPgrasp_YheCD: YheC/D like ATP-grasp | 99.83 | |
| PF08443 | 190 | RimK: RimK-like ATP-grasp domain; InterPro: IPR013 | 98.94 | |
| TIGR00768 | 277 | rimK_fam alpha-L-glutamate ligases, RimK family. T | 98.91 | |
| TIGR02144 | 280 | LysX_arch Lysine biosynthesis enzyme LysX. The fam | 98.9 | |
| TIGR02291 | 317 | rimK_rel_E_lig alpha-L-glutamate ligase-related pr | 98.83 | |
| PRK10446 | 300 | ribosomal protein S6 modification protein; Provisi | 98.82 | |
| PRK01372 | 304 | ddl D-alanine--D-alanine ligase; Reviewed | 98.73 | |
| PRK01966 | 333 | ddl D-alanyl-alanine synthetase A; Reviewed | 98.72 | |
| PLN02941 | 328 | inositol-tetrakisphosphate 1-kinase | 98.7 | |
| PF13535 | 184 | ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A | 98.65 | |
| PRK14571 | 299 | D-alanyl-alanine synthetase A; Provisional | 98.62 | |
| PRK14568 | 343 | vanB D-alanine--D-lactate ligase; Provisional | 98.62 | |
| KOG2158|consensus | 565 | 98.58 | ||
| TIGR01205 | 315 | D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a | 98.51 | |
| PRK14572 | 347 | D-alanyl-alanine synthetase A; Provisional | 98.51 | |
| COG0189 | 318 | RimK Glutathione synthase/Ribosomal protein S6 mod | 98.5 | |
| PF07478 | 203 | Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In | 98.48 | |
| PRK14569 | 296 | D-alanyl-alanine synthetase A; Provisional | 98.45 | |
| PRK14570 | 364 | D-alanyl-alanine synthetase A; Provisional | 98.42 | |
| PRK05246 | 316 | glutathione synthetase; Provisional | 98.4 | |
| TIGR03103 | 547 | trio_acet_GNAT GNAT-family acetyltransferase TIGR0 | 98.35 | |
| PF14397 | 285 | ATPgrasp_ST: Sugar-transfer associated ATP-grasp | 98.29 | |
| PF02655 | 161 | ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 | 98.23 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 98.17 | |
| PLN02257 | 434 | phosphoribosylamine--glycine ligase | 98.16 | |
| PRK12458 | 338 | glutathione synthetase; Provisional | 98.15 | |
| PF02955 | 173 | GSH-S_ATP: Prokaryotic glutathione synthetase, ATP | 98.09 | |
| TIGR01380 | 312 | glut_syn glutathione synthetase, prokaryotic. This | 98.04 | |
| PRK12767 | 326 | carbamoyl phosphate synthase-like protein; Provisi | 98.02 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 98.0 | |
| PRK13789 | 426 | phosphoribosylamine--glycine ligase; Provisional | 97.97 | |
| PRK14016 | 727 | cyanophycin synthetase; Provisional | 97.96 | |
| PRK08463 | 478 | acetyl-CoA carboxylase subunit A; Validated | 97.87 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 97.83 | |
| TIGR00514 | 449 | accC acetyl-CoA carboxylase, biotin carboxylase su | 97.83 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 97.83 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 97.82 | |
| COG1181 | 317 | DdlA D-alanine-D-alanine ligase and related ATP-gr | 97.82 | |
| PRK08591 | 451 | acetyl-CoA carboxylase biotin carboxylase subunit; | 97.81 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 97.79 | |
| PRK05586 | 447 | biotin carboxylase; Validated | 97.78 | |
| PRK08462 | 445 | biotin carboxylase; Validated | 97.78 | |
| PRK07206 | 416 | hypothetical protein; Provisional | 97.76 | |
| PRK06111 | 450 | acetyl-CoA carboxylase biotin carboxylase subunit; | 97.73 | |
| PRK00885 | 420 | phosphoribosylamine--glycine ligase; Provisional | 97.7 | |
| PRK07178 | 472 | pyruvate carboxylase subunit A; Validated | 97.69 | |
| TIGR02068 | 864 | cya_phycin_syn cyanophycin synthetase. Cyanophycin | 97.67 | |
| TIGR00877 | 423 | purD phosphoribosylamine--glycine ligase. This enz | 97.66 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 97.65 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 97.64 | |
| PRK08654 | 499 | pyruvate carboxylase subunit A; Validated | 97.64 | |
| PRK13790 | 379 | phosphoribosylamine--glycine ligase; Provisional | 97.62 | |
| PRK12833 | 467 | acetyl-CoA carboxylase biotin carboxylase subunit; | 97.58 | |
| PRK06524 | 493 | biotin carboxylase-like protein; Validated | 97.54 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 97.5 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 97.48 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 97.45 | |
| TIGR01435 | 737 | glu_cys_lig_rel glutamate--cysteine ligase/gamma-g | 97.39 | |
| PRK02186 | 887 | argininosuccinate lyase; Provisional | 97.37 | |
| PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 97.35 | |
| PRK02471 | 752 | bifunctional glutamate--cysteine ligase/glutathion | 97.24 | |
| COG1821 | 307 | Predicted ATP-utilizing enzyme (ATP-grasp superfam | 97.24 | |
| COG0439 | 449 | AccC Biotin carboxylase [Lipid metabolism] | 97.13 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 97.09 | |
| PRK13278 | 358 | purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D | 97.02 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 96.98 | |
| PRK13277 | 366 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo | 96.97 | |
| PF05770 | 307 | Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- | 96.96 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 96.92 | |
| TIGR02712 | 1201 | urea_carbox urea carboxylase. Members of this fami | 96.89 | |
| ), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071 | 194 | GARS_A: Phosphoribosylglycinamide synthetase, ATP- | 96.85 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 96.75 | |
| PRK05784 | 486 | phosphoribosylamine--glycine ligase; Provisional | 96.68 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 96.58 | |
| PF15632 | 329 | ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa | 96.5 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 96.25 | |
| PF14403 | 445 | CP_ATPgrasp_2: Circularly permuted ATP-grasp type | 96.13 | |
| PF02786 | 211 | CPSase_L_D2: Carbamoyl-phosphate synthase L chain, | 96.08 | |
| COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and c | 95.53 | |
| COG4770 | 645 | Acetyl/propionyl-CoA carboxylase, alpha subunit [L | 94.93 | |
| PF02222 | 172 | ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T | 94.11 | |
| KOG0369|consensus | 1176 | 94.04 | ||
| COG0151 | 428 | PurD Phosphoribosylamine-glycine ligase [Nucleotid | 92.63 | |
| PF02750 | 203 | Synapsin_C: Synapsin, ATP binding domain; InterPro | 92.25 | |
| KOG0238|consensus | 670 | 90.98 | ||
| COG2232 | 389 | Predicted ATP-dependent carboligase related to bio | 89.3 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 86.98 | |
| COG2308 | 488 | Uncharacterized conserved protein [Function unknow | 86.1 | |
| PF04174 | 330 | CP_ATPgrasp_1: A circularly permuted ATPgrasp ; In | 82.72 |
| >KOG2156|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-77 Score=648.53 Aligned_cols=416 Identities=31% Similarity=0.544 Sum_probs=347.1
Q ss_pred CCCcccCccccccCCCccccccccceEEEEEEccCccHHHHHHHHHhCCCEEcCCCCCeEEEEeCCCCChhhhhhcCcCc
Q psy13386 17 LPPIEQSSTSLITGDSDLSSKKSRVRVVATICLDLCSYELVGRVARQCGMTVVDDKSLWDVLWSDPCIGPDTHRRMKRFQ 96 (714)
Q Consensus 17 ~~p~~~~~~~~~~gd~~~~~~k~r~~~~i~i~~~~~~y~~Vr~vl~~~G~~~v~e~~~wdl~W~d~~~~~e~~~~l~~~Q 96 (714)
.||+..+.++...+..-. ..-..++.++.+.-...+|+.++.+.||++++.+.+|..+|+.+.. .-.++.++.||
T Consensus 173 VpP~i~f~s~~~k~~k~p----~~~~~vl~w~~t~~~p~vv~~vl~~sgfkivk~n~dw~g~Wg~h~k-sp~fr~ir~HQ 247 (662)
T KOG2156|consen 173 VPPTILFDSSADKVPKPP----PPLHAVLKWKPTEVMPKVVRQVLANSGFKIVKVNDDWMGVWGHHLK-SPSFRAIRSHQ 247 (662)
T ss_pred CCCeeeeccccccCCCCC----hhHHHHhccCCcchhHHHHHHHHHhcccEEecccchHHHHhhhhcC-Cchhhhhhhhh
Confidence 456666666544443211 1223568999999999999999999999999999999999998643 34578899999
Q ss_pred eecccCCCCcchhhHHHHHHHHHHHHHCCC-CCCcccceeccCcchHHHHHHHhcCC-cEEEEeCCCCCCCCcEEEEccc
Q psy13386 97 RTNHFPLIMELCRKNLLAKNLNQMKIQYPN-DYNFFPQTWILPRDNREVHAFLTSKK-ATVIVKPDNGSNGLGISLIRNL 174 (714)
Q Consensus 97 kVNHFPG~~~LtRKd~LarnL~rm~k~~p~-~y~f~P~TfiLP~d~~~f~~~~k~~k-~~WIvKP~~gsrGrGI~l~~~l 174 (714)
+||||||+..|||||.||+++.+++..|++ +|.|+|+||+||.|.++|..|+.++. ..|||||.+++||.||.+++++
T Consensus 248 kvNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw 327 (662)
T KOG2156|consen 248 KVNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKW 327 (662)
T ss_pred hhccCCCccccccchHHHHHHHHHHHHhcccccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccch
Confidence 999999999999999999999999999975 99999999999999999999998865 7799999999999999999999
Q ss_pred hhhhhccCCceEEeecccCcccCCCceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeecccc
Q psy13386 175 RHLSQEQNRNYICQEYIANPFLIDGLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVN 254 (714)
Q Consensus 175 ~eI~~~~~~~~IVQkYI~nPlLIdGrKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNysIn 254 (714)
.++. .+.+.|||+||++|+||+|.|||+|+||+|||++|||||+|++||+|||+.+|++ ..+|+.|.|||||||++|
T Consensus 328 ~q~p--k~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy~y~dgL~RFasvkYsp-~~a~~~dKymhltnYs~n 404 (662)
T KOG2156|consen 328 SQFP--KDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIYIYNDGLVRFASVKYSP-FDANNVDKYMHLTNYSPN 404 (662)
T ss_pred hhCC--CcccHHHHHHhhcceeecCcceeEEEEEEEeecCceEEEEeccceeeeccccCCc-ccccccceeEEecccccc
Confidence 9999 8889999999999999999999999999999999999999999999999999995 467889999999999999
Q ss_pred ccCCCcccc----cccCCccChhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEEEE
Q psy13386 255 KHSISFIHD----EEVGSKRKISTINQWFCRMGYDTDLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQLLG 330 (714)
Q Consensus 255 K~s~nf~~d----ee~Gsk~sLs~l~~~L~~~G~d~~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFELlG 330 (714)
+.+. |..+ .-.|++|++..++.+|..+|+|.++||.+|+++|++||++.+..+...++... .....||||||
T Consensus 405 ke~~-ys~~k~~n~~~g~kwtl~~lw~~l~~qGvdt~kIW~qir~iV~kti~s~E~~i~~~lr~~~---~~~~~CfELfg 480 (662)
T KOG2156|consen 405 KESN-YSLNKYFNACQGSKWTLKSLWLYLDNQGVDTDKIWEQIRNIVIKTIISGEKGINSMLRNYV---ENPYSCFELFG 480 (662)
T ss_pred ccch-hhhhhHHhhcCCchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccChhHHHHHHHHh---cCCchhhhhhc
Confidence 9876 5432 24799999999999999999999999999999999999999998876665422 23467999999
Q ss_pred EEEEecCCCCeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCCchhhHH--hHHHHHHHHHHHhhcCC--------
Q psy13386 331 FDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDTFILCNLNSSIKRK--VLQEERLEVQRRLFKRP-------- 400 (714)
Q Consensus 331 fDfLLD~~lKPWLLEVN~sPSl~tds~lD~~vK~~LI~DtL~Ll~i~~~~k~~--~~ee~k~~~~~Rll~~~-------- 400 (714)
|||+||++++|||||||.+||+++.+++|-.+|.+||.++|+|+|+....+.. ...+..- --+|+....
T Consensus 481 FDiilDedLkpwLlEVNISPSLhS~tpld~~vk~~li~~vlNlagi~~p~~~s~~~~a~~~~-st~ri~~~~~~~e~l~K 559 (662)
T KOG2156|consen 481 FDIILDEDLKPWLLEVNISPSLHSETPLDCSVKAPLIQDVLNLAGIKVPPKPSTDSLAELSL-STKRITTDKLTREELIK 559 (662)
T ss_pred ceEEecCccceeeEEEecccccccCCCccchhhhHHHHHHHHhcceecCCCccchhhhhhCC-CccccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999987652111 0000000 001111111
Q ss_pred ------CCcchHHHhh---------hhhhHhHHHHHhcCCCeEEeccCCCcccHHHHHhh
Q psy13386 401 ------EREEDEEDRQ---------GCKERQWAWERAHMGNFRLLYPCQDGDKYDSMCRA 445 (714)
Q Consensus 401 ------~~~~~~~~~~---------~~~~~~~~~E~~~~G~F~rIyP~~~~~~Y~~~~~~ 445 (714)
..+++++... -...++.++|..|+|.|+||||++.++.|.+|+++
T Consensus 560 ~~~~t~~~~dq~ey~~il~~LtpddvR~Lv~aedEl~r~~~~erIFPt~~t~~yl~y~~~ 619 (662)
T KOG2156|consen 560 HAAHTCKIEDQEEYVLILDNLTPDDVRCLVEAEDELARRGDFERIFPTAITSPYLKYVEA 619 (662)
T ss_pred HHHHhhcccchHHHHHHHhcCChHHHHHHHHHHHHHHhcccHhhhCCCcCccHHHHHhhh
Confidence 1112222221 11234568999999999999999999999999954
|
|
| >PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed | Back alignment and domain information |
|---|
| >KOG2158|consensus | Back alignment and domain information |
|---|
| >KOG2157|consensus | Back alignment and domain information |
|---|
| >KOG2155|consensus | Back alignment and domain information |
|---|
| >PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp | Back alignment and domain information |
|---|
| >PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] | Back alignment and domain information |
|---|
| >TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family | Back alignment and domain information |
|---|
| >TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX | Back alignment and domain information |
|---|
| >TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein | Back alignment and domain information |
|---|
| >PRK10446 ribosomal protein S6 modification protein; Provisional | Back alignment and domain information |
|---|
| >PRK01372 ddl D-alanine--D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed | Back alignment and domain information |
|---|
| >PLN02941 inositol-tetrakisphosphate 1-kinase | Back alignment and domain information |
|---|
| >PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A | Back alignment and domain information |
|---|
| >PRK14571 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
| >PRK14568 vanB D-alanine--D-lactate ligase; Provisional | Back alignment and domain information |
|---|
| >KOG2158|consensus | Back alignment and domain information |
|---|
| >TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
| >PRK14572 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
| >COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 | Back alignment and domain information |
|---|
| >PRK14569 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
| >PRK14570 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
| >PRK05246 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
| >TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 | Back alignment and domain information |
|---|
| >PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp | Back alignment and domain information |
|---|
| >PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
| >PLN02257 phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
| >PRK12458 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
| >PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 | Back alignment and domain information |
|---|
| >TIGR01380 glut_syn glutathione synthetase, prokaryotic | Back alignment and domain information |
|---|
| >PRK12767 carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
| >PRK13789 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
| >PRK14016 cyanophycin synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK08463 acetyl-CoA carboxylase subunit A; Validated | Back alignment and domain information |
|---|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
| >COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK05586 biotin carboxylase; Validated | Back alignment and domain information |
|---|
| >PRK08462 biotin carboxylase; Validated | Back alignment and domain information |
|---|
| >PRK07206 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
| >PRK00885 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
| >PRK07178 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
| >TIGR02068 cya_phycin_syn cyanophycin synthetase | Back alignment and domain information |
|---|
| >TIGR00877 purD phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
| >PRK08654 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
| >PRK13790 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
| >PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional | Back alignment and domain information |
|---|
| >PRK06524 biotin carboxylase-like protein; Validated | Back alignment and domain information |
|---|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
| >TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type | Back alignment and domain information |
|---|
| >PRK02186 argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
| >PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
| >PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional | Back alignment and domain information |
|---|
| >COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >COG0439 AccC Biotin carboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
| >PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional | Back alignment and domain information |
|---|
| >PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase | Back alignment and domain information |
|---|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
| >TIGR02712 urea_carbox urea carboxylase | Back alignment and domain information |
|---|
| >PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK05784 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
| >PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon | Back alignment and domain information |
|---|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
| >PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 | Back alignment and domain information |
|---|
| >PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
| >COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
| >PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis | Back alignment and domain information |
|---|
| >KOG0369|consensus | Back alignment and domain information |
|---|
| >COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) | Back alignment and domain information |
|---|
| >KOG0238|consensus | Back alignment and domain information |
|---|
| >COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] | Back alignment and domain information |
|---|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >COG2308 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 714 | ||||
| 4i4t_F | 384 | Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co | 4e-13 | ||
| 3tig_A | 380 | Tubulin Tyrosine Ligase Length = 380 | 3e-12 |
| >pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 384 | Back alignment and structure |
|
| >pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase Length = 380 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Length = 380 | Back alignment and structure |
|---|
Score = 268 bits (686), Expect = 2e-83
Identities = 73/361 (20%), Positives = 138/361 (38%), Gaps = 54/361 (14%)
Query: 52 CSYELVGRVARQCG--MTVVDDKSLWDVLWSDPCIGPDTH--RRMKRFQRTNHFPLIMEL 107
Y V ++ G + D ++++ + P Q N++ +L
Sbjct: 15 TVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKL 74
Query: 108 CRKNLLAKNLNQMKIQ------YPNDYNFFPQTWILPRDNR--------------EVHAF 147
CRK L K + +P Y +P P E F
Sbjct: 75 CRKASLVKLIKTSPELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEF 134
Query: 148 LTS--------KKATVIVKPDNGSNGLGISLIRNLRHL---SQEQNRNYICQEYIANPFL 196
+S + I K +G+ G GI + + L Q + ++ Q+Y+ +P L
Sbjct: 135 RSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLL 194
Query: 197 ID--GLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNYSVN 254
++ KFD+R + L+ + IY++++G++R ++ Y N + HLTN+ +
Sbjct: 195 LEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDT---NFQDMTSHLTNHCIQ 249
Query: 255 KHSISFIHDEEVGSKRKISTINQWFCRMG--YDTDLVWSRIDDVIVKTVLSAHPNIKTMY 312
K E G++ NQ+ + + +I ++I + P I T Y
Sbjct: 250 KEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKY 309
Query: 313 NSVFPRHNYMTACFQLLGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDTFI 372
P H FQL GFD ++D L +++EVN +P+ ++ E+ + ++
Sbjct: 310 L---PYH-----SFQLFGFDFMVDKNLKVWLIEVNGAPAC--AQKLYAELCKGIVDLAIS 359
Query: 373 L 373
Sbjct: 360 S 360
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 714 | |||
| 3tig_A | 380 | TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si | 100.0 | |
| 4eg0_A | 317 | D-alanine--D-alanine ligase; structural genomics, | 98.79 | |
| 1iow_A | 306 | DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho | 98.78 | |
| 4fu0_A | 357 | D-alanine--D-alanine ligase 7; vancomycin resistan | 98.77 | |
| 2q7d_A | 346 | Inositol-tetrakisphosphate 1-kinase; inositol kina | 98.76 | |
| 2i87_A | 364 | D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco | 98.74 | |
| 3se7_A | 346 | VANA; alpha-beta structure, D-alanine-D-lactate li | 98.7 | |
| 1e4e_A | 343 | Vancomycin/teicoplanin A-type resistance protein; | 98.69 | |
| 1z2n_X | 324 | Inositol 1,3,4-trisphosphate 5/6-kinase; inositol | 98.67 | |
| 3k3p_A | 383 | D-alanine--D-alanine ligase; D-alanyl-alanine synt | 98.66 | |
| 3i12_A | 364 | D-alanine-D-alanine ligase A; D-alanyl-alanine syn | 98.64 | |
| 1i7n_A | 309 | Synapsin II; synapse, phosphorylation, neuropeptid | 98.61 | |
| 3e5n_A | 386 | D-alanine-D-alanine ligase A; bacterial blight; 2. | 98.6 | |
| 3tqt_A | 372 | D-alanine--D-alanine ligase; cell envelope; 1.88A | 98.59 | |
| 1pk8_A | 422 | RAT synapsin I; ATP binding, ATP grAsp, calcium (I | 98.58 | |
| 2p0a_A | 344 | Synapsin-3, synapsin III; neurotransmitter release | 98.54 | |
| 1ehi_A | 377 | LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g | 98.51 | |
| 1uc8_A | 280 | LYSX, lysine biosynthesis enzyme; alpha-aminoadipa | 98.49 | |
| 3r5x_A | 307 | D-alanine--D-alanine ligase; alpha-beta structure, | 98.49 | |
| 2fb9_A | 322 | D-alanine:D-alanine ligase; 1.90A {Thermus caldoph | 98.48 | |
| 3lwb_A | 373 | D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan | 98.36 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 98.34 | |
| 2r85_A | 334 | PURP protein PF1517; ATP-grAsp superfamily, unknow | 98.34 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 98.34 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 98.32 | |
| 2pvp_A | 367 | D-alanine-D-alanine ligase; 2.40A {Helicobacter py | 98.28 | |
| 3ouz_A | 446 | Biotin carboxylase; structural genomics, center fo | 98.18 | |
| 4dim_A | 403 | Phosphoribosylglycinamide synthetase; structural g | 98.18 | |
| 1ulz_A | 451 | Pyruvate carboxylase N-terminal domain; biotin car | 98.17 | |
| 2z04_A | 365 | Phosphoribosylaminoimidazole carboxylase ATPase su | 98.16 | |
| 3vot_A | 425 | L-amino acid ligase, BL00235; ATP-grAsp motif, ATP | 98.13 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 98.12 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 98.11 | |
| 2vpq_A | 451 | Acetyl-COA carboxylase; bacteria, ATP-grAsp domain | 98.11 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 98.1 | |
| 3lp8_A | 442 | Phosphoribosylamine-glycine ligase; ssgcid, NIH, n | 98.06 | |
| 1gsa_A | 316 | Glutathione synthetase; ligase; HET: ADP GSH; 2.00 | 98.06 | |
| 3aw8_A | 369 | PURK, phosphoribosylaminoimidazole carboxylase, AT | 98.05 | |
| 2yw2_A | 424 | Phosphoribosylamine--glycine ligase; glycinamide r | 98.03 | |
| 3mjf_A | 431 | Phosphoribosylamine--glycine ligase; structural ge | 98.0 | |
| 2ip4_A | 417 | PURD, phosphoribosylamine--glycine ligase; GAR syn | 98.0 | |
| 2xcl_A | 422 | Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- | 97.98 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 97.95 | |
| 3ln6_A | 750 | Glutathione biosynthesis bifunctional protein GSH; | 97.92 | |
| 2w70_A | 449 | Biotin carboxylase; ligase, ATP-binding, fatty aci | 97.91 | |
| 2yrx_A | 451 | Phosphoribosylglycinamide synthetase; glycinamide | 97.9 | |
| 3glk_A | 540 | Acetyl-COA carboxylase 2; ATP binding, alternative | 97.86 | |
| 3jrx_A | 587 | Acetyl-COA carboxylase 2; BC domain, soraphen A, a | 97.81 | |
| 1w96_A | 554 | ACC, acetyl-coenzyme A carboxylase; ligase, obesit | 97.81 | |
| 1vkz_A | 412 | Phosphoribosylamine--glycine ligase; TM1250, struc | 97.8 | |
| 3df7_A | 305 | Putative ATP-grAsp superfamily protein; putative p | 97.8 | |
| 2dzd_A | 461 | Pyruvate carboxylase; biotin carboxylase, ligase; | 97.78 | |
| 2pn1_A | 331 | Carbamoylphosphate synthase large subunit; ZP_0053 | 97.74 | |
| 3t7a_A | 330 | Inositol pyrophosphate kinase; ATP-grAsp fold, tra | 97.71 | |
| 2qk4_A | 452 | Trifunctional purine biosynthetic protein adenosi; | 97.7 | |
| 3vmm_A | 474 | Alanine-anticapsin ligase BACD; ATP-grAsp domain, | 97.69 | |
| 3eth_A | 355 | Phosphoribosylaminoimidazole carboxylase ATPase su | 97.59 | |
| 3ln7_A | 757 | Glutathione biosynthesis bifunctional protein GSH; | 97.57 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 97.45 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 97.43 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 97.31 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 97.12 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 97.02 | |
| 3n6x_A | 474 | Putative glutathionylspermidine synthase; domain o | 97.0 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 97.0 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 96.98 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 96.79 | |
| 2r7k_A | 361 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib | 96.45 | |
| 2cqy_A | 108 | Propionyl-COA carboxylase alpha chain, mitochondri | 95.66 | |
| 2pbz_A | 320 | Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt | 94.8 | |
| 2io8_A | 619 | Bifunctional glutathionylspermidine synthetase/ami | 85.04 |
| >3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-67 Score=564.94 Aligned_cols=305 Identities=22% Similarity=0.398 Sum_probs=229.1
Q ss_pred cCccHHHHHHHHHhCC-CEEcCC-CCCeEEEEeCCCC-Chhhhhhc-CcCceecccCCCCcchhhHHHHHHHHHHHHHCC
Q psy13386 50 DLCSYELVGRVARQCG-MTVVDD-KSLWDVLWSDPCI-GPDTHRRM-KRFQRTNHFPLIMELCRKNLLAKNLNQMKIQYP 125 (714)
Q Consensus 50 ~~~~y~~Vr~vl~~~G-~~~v~e-~~~wdl~W~d~~~-~~e~~~~l-~~~QkVNHFPG~~~LtRKd~LarnL~rm~k~~p 125 (714)
..+.|++|+++|.+.| |+++.+ +.+|||+|++... ++.++... ..+|+||||||+++|||||.|++||+++. .++
T Consensus 13 ~~svy~~V~~vL~~~g~w~ev~~~~~~~dl~W~~~~~~p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~-~~~ 91 (380)
T 3tig_A 13 NSTVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP-ELT 91 (380)
T ss_dssp SCHHHHHHHHHHHHTTSEEECCTTCSCCSEEECCSSSCCGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH-HHH
T ss_pred CccHHHHHHHHHHhcCCeEEeCCCCCceeEEEecCCCCCHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhh-hcc
Confidence 4578999999999999 988864 6789999998754 45555443 67999999999999999999999999954 467
Q ss_pred CCCCcccceecc-Cc-----------------------chHHHHHHHhc-----CCcEEEEeCCCCCCCCcEEEEccchh
Q psy13386 126 NDYNFFPQTWIL-PR-----------------------DNREVHAFLTS-----KKATVIVKPDNGSNGLGISLIRNLRH 176 (714)
Q Consensus 126 ~~y~f~P~TfiL-P~-----------------------d~~~f~~~~k~-----~k~~WIvKP~~gsrGrGI~l~~~l~e 176 (714)
..++|+|+||.| |. |+.+|.+++++ .+++||+||.++++|+||++++++++
T Consensus 92 ~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~~~~~ 171 (380)
T 3tig_A 92 ETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATE 171 (380)
T ss_dssp TTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC----CCBCCSCSHH
T ss_pred cccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeCCHHH
Confidence 889999999999 76 45578776643 23999999999999999999999999
Q ss_pred hhhc---cCCceEEeecccCcccC--CCceEEEEEEEEEeeecCCEEEEEeceEEEeccCCCCCCCCCCCCCceeEeeec
Q psy13386 177 LSQE---QNRNYICQEYIANPFLI--DGLKFDMRVYTLITSFDPMRIYVHKDGIVRFATVKYERPKQGNLTNKYMHLTNY 251 (714)
Q Consensus 177 I~~~---~~~~~IVQkYI~nPlLI--dGrKFDLRvYVLVTS~dPLrIYlY~eGlvRfAt~~Y~~p~~~Nl~d~~~HLTNy 251 (714)
+... ....+|||+||+||+|| +|+|||||+|||||| ||+||+|++|++|||+++|+. .|++|.++||||+
T Consensus 172 i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~---~~~~~~~~HLTN~ 246 (380)
T 3tig_A 172 LLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSD---TNFQDMTSHLTNH 246 (380)
T ss_dssp HHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC---------------------
T ss_pred HHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcCc---cchhhhhhhcccc
Confidence 8642 46789999999999999 999999999999999 999999999999999999984 5788899999999
Q ss_pred ccccc-CCCcccccccCCccChhHHHHHHHHc-CCCh-hHHHHHHHHHHHHHHHHhhhhHHHhhcccCCCCCCCCCeEEE
Q psy13386 252 SVNKH-SISFIHDEEVGSKRKISTINQWFCRM-GYDT-DLVWSRIDDVIVKTVLSAHPNIKTMYNSVFPRHNYMTACFQL 328 (714)
Q Consensus 252 sInK~-s~nf~~dee~Gsk~sLs~l~~~L~~~-G~d~-~~lw~~IkdiIikTllAa~p~L~~~y~~~~~~~~~~~~cFEL 328 (714)
+|||+ +++|... +.|++|+++.|++||.+. |.++ +.+|.+|+++|++++.|+++.+.... ...+|||+
T Consensus 247 ~iqk~~~~~y~~~-~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~~~~--------~~~~~FEl 317 (380)
T 3tig_A 247 CIQKEHSKNYGRY-EEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKY--------LPYHSFQL 317 (380)
T ss_dssp -----------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHCCTT--------SSSEECEE
T ss_pred ccccccccccccc-cCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhcc--------cCCceEEE
Confidence 99996 5677653 458999999999999864 5555 58999999999999999998874321 23579999
Q ss_pred EEEEEEecCCCCeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcC
Q psy13386 329 LGFDILLDDTLNPYVLEVNHSPSFYTDTEIDVEIKEQVLRDTFILCN 375 (714)
Q Consensus 329 lGfDfLLD~~lKPWLLEVN~sPSl~tds~lD~~vK~~LI~DtL~Ll~ 375 (714)
||||||||++++|||||||++|++... +..+|++++|+++.
T Consensus 318 ~G~D~lid~~l~~wllEVN~~P~~~q~------~i~~l~~~~~~iav 358 (380)
T 3tig_A 318 FGFDFMVDKNLKVWLIEVNGAPACAQK------LYAELCKGIVDLAI 358 (380)
T ss_dssp EEEEEEEBTTCCEEEEEEESSCCCCTT------THHHHHHHHHHHTT
T ss_pred EeEEEEEcCCCcEEEEEEeCCCCccHH------hHHHHHHHHHHHhc
Confidence 999999999999999999999999753 56677777777653
|
| >4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A | Back alignment and structure |
|---|
| >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* | Back alignment and structure |
|---|
| >4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} | Back alignment and structure |
|---|
| >2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X | Back alignment and structure |
|---|
| >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* | Back alignment and structure |
|---|
| >3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} | Back alignment and structure |
|---|
| >1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* | Back alignment and structure |
|---|
| >1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* | Back alignment and structure |
|---|
| >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} | Back alignment and structure |
|---|
| >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* | Back alignment and structure |
|---|
| >1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* | Back alignment and structure |
|---|
| >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* | Back alignment and structure |
|---|
| >3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} | Back alignment and structure |
|---|
| >1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* | Back alignment and structure |
|---|
| >2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 | Back alignment and structure |
|---|
| >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* | Back alignment and structure |
|---|
| >3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* | Back alignment and structure |
|---|
| >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* | Back alignment and structure |
|---|
| >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
| >2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* | Back alignment and structure |
|---|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
| >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* | Back alignment and structure |
|---|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} | Back alignment and structure |
|---|
| >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
| >3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} | Back alignment and structure |
|---|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
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| >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} | Back alignment and structure |
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| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
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| >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
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| >1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A | Back alignment and structure |
|---|
| >3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A | Back alignment and structure |
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| >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A | Back alignment and structure |
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| >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} | Back alignment and structure |
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| >2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* | Back alignment and structure |
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| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
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| >3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
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| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... | Back alignment and structure |
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| >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A | Back alignment and structure |
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| >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A | Back alignment and structure |
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| >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* | Back alignment and structure |
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| >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A | Back alignment and structure |
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| >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
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| >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} | Back alignment and structure |
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| >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} | Back alignment and structure |
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| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
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| >3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* | Back alignment and structure |
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| >2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} | Back alignment and structure |
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| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} | Back alignment and structure |
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| >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* | Back alignment and structure |
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| >3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} | Back alignment and structure |
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| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} | Back alignment and structure |
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| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
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| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
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| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
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| >3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} | Back alignment and structure |
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| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
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| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
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| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} | Back alignment and structure |
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| >2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* | Back alignment and structure |
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| >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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| >2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 | Back alignment and structure |
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| >2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A* | Back alignment and structure |
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Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 714 | |||
| d1i7na2 | 206 | Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 | 98.93 | |
| d1iowa2 | 210 | D-ala-D-ala ligase, C-domain {Escherichia coli, ge | 98.71 | |
| d1e4ea2 | 211 | D-alanine:D-lactate ligase VanA, C-domain {Enteroc | 98.67 | |
| d1ehia2 | 228 | D-alanine:D-lactate ligase VanA, C-domain {Leucono | 98.61 | |
| d1uc8a2 | 192 | Lysine biosynthesis enzyme LysX ATP-binding domain | 98.52 | |
| d1vkza3 | 220 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 98.29 | |
| d1ulza3 | 214 | Biotin carboxylase (BC), domain 2 {Aquifex aeolicu | 98.29 | |
| d1gsoa3 | 224 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 98.21 | |
| d1gsaa2 | 192 | Prokaryotic glutathione synthetase, C-domain {Esch | 98.13 | |
| d2r85a2 | 235 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 98.11 | |
| d1w96a3 | 267 | Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye | 98.0 | |
| d2r7ka2 | 238 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 97.85 | |
| d1kjqa3 | 206 | Glycinamide ribonucleotide transformylase PurT, do | 97.33 | |
| d2j9ga3 | 216 | Biotin carboxylase (BC), domain 2 {Escherichia col | 97.19 | |
| d1a9xa6 | 259 | Carbamoyl phosphate synthetase (CPS), large subuni | 96.98 | |
| d1a9xa5 | 275 | Carbamoyl phosphate synthetase (CPS), large subuni | 96.14 | |
| d3etja3 | 198 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.52 | |
| d2io8a3 | 297 | Glutathionylspermidine synthase, synthetase domain | 84.52 |
| >d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Synapsin C-terminal domain domain: Synapsin II species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=4.4e-09 Score=101.44 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=42.0
Q ss_pred CcEEEEeCCCCCCCCcEEEEccchhhhh------ccCCceEEeecccCcccCCCceEEEEEEEE
Q psy13386 152 KATVIVKPDNGSNGLGISLIRNLRHLSQ------EQNRNYICQEYIANPFLIDGLKFDMRVYTL 209 (714)
Q Consensus 152 k~~WIvKP~~gsrGrGI~l~~~l~eI~~------~~~~~~IVQkYI~nPlLIdGrKFDLRvYVL 209 (714)
...+|+||..|+.|+||+++++.+++.. .....+++|+||.. ++|+|+.|+
T Consensus 50 ~~PvVvKP~~g~~g~Gv~~v~~~~~l~~~~~~~~~~~~~~~vqe~I~~-------~~dirv~vi 106 (206)
T d1i7na2 50 TFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDA-------KYDIRVQKI 106 (206)
T ss_dssp CSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCCE-------EEEEEEEEE
T ss_pred CCceEEecCCCCCCCCeEEEeecchhhhHHHHHhhccCeEEEEEeecc-------cceEEEEEE
Confidence 3568999999999999999999887753 24568999999952 479999886
|
| >d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} | Back information, alignment and structure |
|---|
| >d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine synthase, synthetase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|