Psyllid ID: psy13395

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MSSSTCGSAISSTQPNQPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQHSNCSSPQ
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEcHHHHHHcccHHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEEcccccccccccccEEEEEEEEccccccccccccEEEEEEEEEcccccEEEEEEccHHHHHHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHHHcccEEEEcccccHHcccccccccccccEEEccHHHHHccccEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEcHHHHHHHccHHHHHHHHHHHHHHHHccccEcccEEEEEcccccccEEEEEcEcccccccccccEEEEEEEccccccccccccEEEEEEEEccccccEEEEEcHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mssstcgsaisstqpnqpplflsdeqvRDLLDWESLVPAIESVMVKVSkkeviqparlfmripevngvllsmpgyikrtgpdgedsLAIKVVTSFtdnkvkglpSVLATVLLYntdngklkVVMEGTEITKWRTAAASVVATkhlfgrsgdkDLVLAIMGSGAQAYIHAKAFHASLKLKkynrgltegtvtgstkkgmatEDVITAKLIYDkyqaqhsncsspq
Flexible Loop (DISEMBL)
mssstcgsaisstqpnqpplFLSDEQVRDLLDWESLVPAIESVMVKVSKKeviqparlfmripevngvLLSMPGYIKRTGPDGEDSLAIKVVTsftdnkvkglpSVLATVLlyntdngklKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKlkkynrgltegtvtgstkkgmatEDVITAKLIYDKYQAQHSNCSSPQ
Low Complexity Region (SEG)
MssstcgsaissTQPNQPPLFLSDEQVRDLLDWESLVPAIesvmvkvskkevIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQHSNCSSPQ
Disordered region (IsUnstruct)
************************EQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKY***********
Disordered Region (DISOPRED)
*******************LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQHSNCSSP*
Disordered Region (DISEMBL)
***************NQPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKY***********
Disordered Region (DISPRO)
***************NQPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQHSNC****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSTCGSAISSTQPNQPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQHSNCSSPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
O54983	313	Thiomorpholine-carboxylat	yes	N/A	0.772	0.552	0.367	3e-19
Q9QYU4	313	Thiomorpholine-carboxylat	yes	N/A	0.709	0.507	0.373	5e-19
Q14894	314	Thiomorpholine-carboxylat	yes	N/A	0.700	0.5	0.375	3e-17
Q2KHX6	314	Thiomorpholine-carboxylat	yes	N/A	0.700	0.5	0.375	8e-17
Q28488	314	Thiomorpholine-carboxylat	N/A	N/A	0.700	0.5	0.358	1e-14
Q54CJ8	368	Uncharacterized cyclodeam	yes	N/A	0.647	0.394	0.308	2e-11
P58339	330	Ornithine cyclodeaminase	yes	N/A	0.683	0.463	0.269	6e-09
O28608	322	Alanine dehydrogenase OS=	yes	N/A	0.633	0.440	0.285	8e-08
P33728	320	Ornithine cyclodeaminase	no	N/A	0.433	0.303	0.297	2e-06
Q9HDZ0	330	Uncharacterized protein P	yes	N/A	0.629	0.427	0.327	4e-06

>sp|O54983|CRYM_MOUSE Thiomorpholine-carboxylate dehydrogenase OS=Mus musculus GN=Crym PE=1 SV=1

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 96/188 (51%), Gaps = 15/188 (7%)

Query: 17  QPPLFLSDEQVRDLLDWESL-VPAIESVMVKVSKKE---VIQPARLFMRIPEVNGVLLSM 72
           + P FLS E+V+D L   SL +P +E+ +   SK     V+QP R  + + +  G L  M
Sbjct: 3   RAPAFLSAEEVQDHLRSSSLLIPPLEAALANFSKGPDGGVMQPVRTVVPVAKHRGFLGVM 62

Query: 73  PGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKW 132
           P Y        ED+L  K+VT +  +    +PS  A+VLL++  NG L  VM+G  IT  
Sbjct: 63  PAYSA-----AEDALTTKLVTFYEGHSNTAVPSHQASVLLFDPSNGSLLAVMDGNVITAK 117

Query: 133 RTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNRGLTEGT 189
           RTAA S +ATK L     D   VL I+G+G QAY H + F      K+   +NR      
Sbjct: 118 RTAAVSAIATKLLKPPGSD---VLCILGAGVQAYSHYEIFTEQFSFKEVRMWNRTRENAE 174

Query: 190 VTGSTKKG 197
              ST +G
Sbjct: 175 KFASTVQG 182

Specifically catalyzes the reduction of imine bonds in brain substrates that may include cystathionine ketimine (CysK) and lanthionine ketimine (LK). Binds thyroid hormone which is a strong reversible inhibitor. Presumably involved in the regulation of the free intracellular concentration of triiodothyronine and access to its nuclear receptors.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 5EC: .EC: 1EC: .EC: 2EC: 5

>sp|Q9QYU4|CRYM_RAT Thiomorpholine-carboxylate dehydrogenase OS=Rattus norvegicus GN=Crym PE=1 SV=1

 Score = 94.4 bits (233), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 15/174 (8%)

Query: 17  QPPLFLSDEQVRDLLDWESL-VPAIESVMVKVSKKE---VIQPARLFMRIPEVNGVLLSM 72
           + P FLS ++V+D L   SL +P +E+ +   SK     V+QP R  + + +  G L  M
Sbjct: 3   RAPAFLSADEVQDHLRSSSLLIPPLEAALANFSKGPDGGVMQPVRTVVPVAKHRGFLGVM 62

Query: 73  PGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKW 132
           P Y        ED+L  K+VT +  +    +PS  A+VLL++  NG L  VM+G  IT  
Sbjct: 63  PAYSA-----AEDALTTKLVTFYEGHSNNAVPSHQASVLLFDPSNGSLLAVMDGNVITAK 117

Query: 133 RTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
           RTAA S +ATK L     D   VL I+G+G QAY H + F      K+   +NR
Sbjct: 118 RTAAVSAIATKFLKPPGSD---VLCILGAGVQAYSHYEIFTEQFSFKEVRMWNR 168

Specifically catalyzes the reduction of imine bonds in brain substrates that may include cystathionine ketimine (CysK) and lanthionine ketimine (LK). Binds thyroid hormone which is a strong reversible inhibitor. Presumably involved in the regulation of the free intracellular concentration of triiodothyronine and access to its nuclear receptors.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q14894|CRYM_HUMAN Thiomorpholine-carboxylate dehydrogenase OS=Homo sapiens GN=CRYM PE=1 SV=1

 Score = 88.6 bits (218), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 90/173 (52%), Gaps = 16/173 (9%)

Query: 19  PLFLSDEQVRDLLDWESL-VPAIESVMVKVS---KKEVIQPARLFMRIPEVNGVLLSMPG 74
           P FLS  +V + L   SL +P +E+ +   S   +  V+QP R  + + +  G L  MP 
Sbjct: 5   PAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGVMPA 64

Query: 75  YIKRTGPDGEDSLAIKVVTSFTDNKVKGL-PSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
           Y        ED+L  K+VT + D  +  + PS  ATVLL+   NG L  VM+G  IT  R
Sbjct: 65  Y-----SAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKR 119

Query: 134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
           TAA S +ATK L   S +   VL I+G+G QAY H + F      K+   +NR
Sbjct: 120 TAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEIFTEQFSFKEVRIWNR 169

Specifically catalyzes the reduction of imine bonds in brain substrates that may include cystathionine ketimine (CysK) and lanthionine ketimine (LK). Binds thyroid hormone which is a strong reversible inhibitor. Presumably involved in the regulation of the free intracellular concentration of triiodothyronine and access to its nuclear receptors.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q2KHX6|CRYM_BOVIN Thiomorpholine-carboxylate dehydrogenase OS=Bos taurus GN=CRYM PE=2 SV=1

 Score = 87.4 bits (215), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 90/173 (52%), Gaps = 16/173 (9%)

Query: 19  PLFLSDEQVRDLLDWESLVPA-IESVMVKVSKKE---VIQPARLFMRIPEVNGVLLSMPG 74
           P+FLS   V+D L   SL+ A +E+ +   S      V+QP R  + + +  G L  MP 
Sbjct: 5   PVFLSAADVQDHLRSSSLLIAPLETALANFSSGPDGGVVQPVRTVVPVAKHRGFLGVMPA 64

Query: 75  YIKRTGPDGEDSLAIKVVTSFTDNKVKG-LPSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
           Y        ED+L  K+VT + D+     +PS  ATVLL+   NG L  VM+G  IT  R
Sbjct: 65  Y-----SAAEDALTTKLVTFYEDHSATSTVPSHQATVLLFQPSNGSLLAVMDGNVITAKR 119

Query: 134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
           TAA S +ATK L   + +   VL I+G+G QAY H + F      K+   +NR
Sbjct: 120 TAAVSAIATKFLKPPNSE---VLCILGAGVQAYSHYEVFTEQFFFKEVRIWNR 169

Specifically catalyzes the reduction of imine bonds in brain substrates that may include cystathionine ketimine (CysK) and lanthionine ketimine (LK). Binds thyroid hormone which is a strong reversible inhibitor. Presumably involved in the regulation of the free intracellular concentration of triiodothyronine and access to its nuclear receptors.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q28488|CRYM_MACFL Thiomorpholine-carboxylate dehydrogenase OS=Macropus fuliginosus GN=CRYM PE=2 SV=1

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 84/173 (48%), Gaps = 16/173 (9%)

Query: 19  PLFLSDEQVRDLLDWES-LVPAIESVMVKVSKKE---VIQPARLFMRIPEVNGVLLSMPG 74
           P FL  E V   L   S L+PA+E  +   S      V+QP R  + + +  G L  MP 
Sbjct: 5   PAFLRSEDVERYLGSSSILLPALEKALANFSSGSEGGVVQPVRTVIPVAKHQGFLGIMPV 64

Query: 75  YIKRTGPDGEDSLAIKVVTSFTD-NKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
           Y        ED+L  K+VT +   +     PS   TVL ++  NG L  +M+G  IT  R
Sbjct: 65  Y-----SASEDALTTKLVTFYEGMSPTSTAPSHQTTVLFFDPSNGSLLSIMDGNIITAKR 119

Query: 134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
           TAA S +ATK L   S +   VL I+G+G QAY H + F      K+   +NR
Sbjct: 120 TAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEIFKEQFSFKEVRIWNR 169

Specifically catalyzes the reduction of imine bonds in brain substrates that may include cystathionine ketimine (CysK) and lanthionine ketimine (LK). Binds thyroid hormone which is a strong reversible inhibitor. Presumably involved in the regulation of the free intracellular concentration of triiodothyronine and access to its nuclear receptors (By similarity). Major component of eye lens in marsupials.

Macropus fuliginosus (taxid: 9316)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q54CJ8|OCDL_DICDI Uncharacterized cyclodeaminase OS=Dictyostelium discoideum GN=DDB_G0292894 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 14/159 (8%)

Query: 20  LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPE----------VNGVL 69
           L + +  V+ L+  + ++   E V +K SK+EV+ P R+ + + +          +N   
Sbjct: 2   LIIKESDVKKLISLKEVIDINEQVFIKESKEEVVCPERIILPVEKTQPQQDSNEPINKKQ 61

Query: 70  LSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEI 129
           L    Y K +    E S+ IK+V +F +N  KGLP+V AT++L + + G    V+  T I
Sbjct: 62  LVGNLYFKPSLVVDE-SVGIKIVGTFANNANKGLPTVPATIILNDIETGLANAVIGATYI 120

Query: 130 TKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIH 168
           T  RTAA S ++ K+L   S +    + + GS  QA +H
Sbjct: 121 TGARTAAGSAISVKYLATESPE---TIFVFGSSLQAQLH 156

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P58339|OCD2_RHIME Ornithine cyclodeaminase 2 OS=Rhizobium meliloti (strain 1021) GN=ocd2 PE=3 SV=2

 Score = 61.2 bits (147), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 10/163 (6%)

Query: 20  LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
           L L  ++VR L+    ++ A+E      S  +V QP  + +  P + G +    GY K  
Sbjct: 4   LLLKKDEVRRLIGMAEVIGAVEEAYKAFSSDQVEQPDYIGIHHPSLRGEIDFKLGYYK-- 61

Query: 80  GPDGEDSLAIKVVTS-FTDNKVK-GLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAA 137
                + +++K  +  FT+N  + G+P+ + T+LL++  +  L  +M+G+ IT  RT A+
Sbjct: 62  ---ANEIISMKAHSGGFTNNPAEHGVPNSIGTILLFDARSCALICIMDGSLITGLRTGAS 118

Query: 138 SVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK 180
             V+ K L  ++      +A +G+G QA +  +A +  +K++K
Sbjct: 119 GAVSVKALARKNA---RTVASIGTGNQARMQIRAVNEIMKIEK 158

Rhizobium meliloti (strain 1021) (taxid: 266834)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O28608|ALADH_ARCFU Alanine dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ala PE=1 SV=1

 Score = 57.4 bits (137), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 12/154 (7%)

Query: 20  LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
           L L+ E+V  L+  +  + A+E      +  +   P ++++   +  G L +MP ++   
Sbjct: 4   LILTQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVYLEFEK--GDLRAMPAHL--M 59

Query: 80  GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
           G  G     +K V S   N  KGLP+V+A ++L + + G    VM+ T  T  RT AA  
Sbjct: 60  GYAG-----LKWVNSHPGNPDKGLPTVMALMILNSPETGFPLAVMDATYTTSLRTGAAGG 114

Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFH 173
           +A K+L  ++     V   +G G QAY   +A  
Sbjct: 115 IAAKYLARKNSS---VFGFIGCGTQAYFQLEALR 145

Catalyzes the NAD(+)-dependent oxidative deamination of L-alanine to pyruvate, and the reverse reaction, the reductive amination of pyruvate. Its physiological role is not known. Can not use NADP(+) instead of NAD(+) as a cosubstrate. In the deamination direction, can also efficiently use L-2-aminobutyrate as substrate. In the reductive amination direction, also exhibits high activity with 2-oxobutyrate and oxaloacetate as substrate. In contrast to bacterial homologs, does not exhibit any ornithine cyclodeaminase activity.

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P33728|OCD_RHIML Ornithine cyclodeaminase OS=Rhizobium meliloti GN=ocd PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 14/111 (12%)

Query: 63  PEVNGVLLSMPGYI---KRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGK 119
           P  + ++ +MPG++   +R G        +K + +++ N+  GLPS+   ++L + D G 
Sbjct: 49  PRHDALIHAMPGWLPTQRRAG--------LKWIATYSSNRSVGLPSITGLLVLNDPDTGL 100

Query: 120 LKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAK 170
              VM+   +T  RTAAAS V +K+L      K   +A++G+G Q   H +
Sbjct: 101 PVCVMDAAYLTAVRTAAASAVTSKYLSPSHVRK---IAVIGAGIQGLYHVE 148

Rhizobium meliloti (taxid: 382)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9HDZ0|YK01_SCHPO Uncharacterized protein P11E10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP11E10.01 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 24/165 (14%)

Query: 21  FLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPE------VNGVLLSMPG 74
           FLS E +   L W  L+ A+  +  +     V+ P RL   I E       N +LL MP 
Sbjct: 7   FLSRETLSSSLGWIPLINALREIFTE----NVVCPTRLHYPIDEDNPSSTANNILLIMPC 62

Query: 75  YIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRT 134
           +I          L +K V  F +N   GLPS+ +  LL +   G     ++G E+T  RT
Sbjct: 63  WIP------GKFLGVKQVNVFPENTKHGLPSLSSHYLLSDATTGCHLAQLDGNELTSRRT 116

Query: 135 AAASVVATKHLFGRSGDKDLVLAIMGSG--AQAYIHAKAFHASLK 177
           AAAS +A+      S +    L I+GSG  A+  IHA   H S++
Sbjct: 117 AAASALASS---YLSKEDSTSLLIIGSGKVAEKLIHA---HCSVR 155

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
242009886	322	ornithine cyclodeaminase, putative [Pedi	0.705	0.490	0.456	2e-31
91088597	318	PREDICTED: similar to ornithine cyclodea	0.709	0.5	0.408	6e-25
194891522	355	GG19086 [Drosophila erecta] gi|190649156	0.745	0.470	0.360	6e-24
195480886	357	GE17631 [Drosophila yakuba] gi|194188957	0.767	0.481	0.348	4e-23
156353422	307	predicted protein [Nematostella vectensi	0.674	0.491	0.415	5e-23
195351582	353	GM13473 [Drosophila sechellia] gi|194124	0.736	0.467	0.348	6e-23
24642678	355	CG4872 [Drosophila melanogaster] gi|1844	0.736	0.464	0.353	8e-23
195567230	352	GD17316 [Drosophila simulans] gi|1942045	0.727	0.463	0.357	2e-22
158287495	368	AGAP011137-PA [Anopheles gambiae str. PE	0.714	0.434	0.360	8e-22
195173899	354	GL22385 [Drosophila persimilis] gi|19411	0.732	0.463	0.345	4e-21

>gi|242009886|ref|XP_002425713.1| ornithine cyclodeaminase, putative [Pediculus humanus corporis] gi|212509614|gb|EEB12975.1| ornithine cyclodeaminase, putative [Pediculus humanus corporis]

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 108/171 (63%), Gaps = 13/171 (7%)

Query: 19  PLFLSDEQVRDLLDWESLVPAIESVMVKVSKKE------VIQPARLFMRIPEVNGVLLSM 72
           P+ ++++ V+ L++W  L  AI+ VM+ VS K       ++QPAR FM+IP  N V+L M
Sbjct: 5   PVLVTEDDVKSLIEWNPLFDAIKGVMMDVSLKSNSTDNLIVQPARSFMKIPHKNAVMLMM 64

Query: 73  PGYIKRTGPDGEDSLAIKVVTSFTDNKVK-GLPSVLATVLLYNTDNGKLKVVMEGTEITK 131
           PG  +R        L+ K+VTSF DN  K  LPS++A V +++T  GKLK V+EGT IT+
Sbjct: 65  PGLSERN-----KVLSCKIVTSFVDNPSKYNLPSIMANVFVFDTHTGKLKAVLEGTTITE 119

Query: 132 WRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKYN 182
           WRTAAAS VAT +L   +G K+  LA++G+GAQ  IH  AF      KK N
Sbjct: 120 WRTAAASAVATHYLKPEAG-KNETLAVIGAGAQGRIHIIAFKHFFNFKKVN 169

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088597|ref|XP_973576.1| PREDICTED: similar to ornithine cyclodeaminase [Tribolium castaneum] gi|270012255|gb|EFA08703.1| hypothetical protein TcasGA2_TC006374 [Tribolium castaneum]

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 103/169 (60%), Gaps = 10/169 (5%)

Query: 20  LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
           L++++E V  LL+W+S   AIE  +   +K   IQ  R F + P+ + +LL+MPGY+   
Sbjct: 5   LYINEETVTKLLNWDSTFKAIEIALECTAKNRAIQSPRTFTKCPKTDSILLTMPGYLDN- 63

Query: 80  GPDGEDSLAIKVVTSFTDNKV--KGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAA 137
             D   +L  K+VT+  +N    + LP++ A ++L++   G LK V+ GTEITKWRTAAA
Sbjct: 64  --DAFGALGCKLVTATPNNATLPQPLPTINAHIMLFDDVTGVLKAVIAGTEITKWRTAAA 121

Query: 138 SVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASL---KLKKYNR 183
           S VATK+L    G K  VLAI+G+G Q + HA AF       +++ +NR
Sbjct: 122 SAVATKYL--TRGKKLKVLAILGAGNQGHSHALAFSHFFPFEEIRIWNR 168

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194891522|ref|XP_001977507.1| GG19086 [Drosophila erecta] gi|190649156|gb|EDV46434.1| GG19086 [Drosophila erecta]

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 112/197 (56%), Gaps = 30/197 (15%)

Query: 19  PLFLSDEQVRDLLDWESLVPAIESVMVKVSKKE--------VIQPARLFMRIPEVNG-VL 69
           P + + + VR +L W  +  A+ES +V + K+          IQP R F+      G +L
Sbjct: 6   PAYYNADAVRQVLTWPLVNRAVESALVAIVKQNPDTAATSFAIQPKRSFVACGNEPGKIL 65

Query: 70  LSMPGYI-------KRTGPDGE---DSLAIKVVTSFTDNKVKG--LPSVLATVLLYNTDN 117
           L+MP Y+        R+  + E    ++A K+VTSFT N ++   LPS+ A V+L++   
Sbjct: 66  LTMPAYVGNYSLESPRSPGEAEHTRSTIACKLVTSFTGNPLRDPPLPSIHAHVMLFDNQT 125

Query: 118 GKLKVVMEGTEITKWRTAAASVVATKHLFGR------SGDKDLVLAIMGSGAQAYIHAKA 171
           G+L  +MEGT++T WRT +AS+VATK+L+ R        ++ + +AI+G G Q  +HA A
Sbjct: 126 GQLSAIMEGTDLTTWRTVSASLVATKYLYFRRFGSKTEHERTINVAILGCGVQGQLHAVA 185

Query: 172 FHASLKLKK---YNRGL 185
           F A+ ++KK   YNR L
Sbjct: 186 FCANFRVKKLNLYNRTL 202

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195480886|ref|XP_002101433.1| GE17631 [Drosophila yakuba] gi|194188957|gb|EDX02541.1| GE17631 [Drosophila yakuba]

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 113/204 (55%), Gaps = 32/204 (15%)

Query: 19  PLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEV----------IQPARLFMRIPEVNG- 67
           P + + + VR +L W  +  A+E+ +V + K++            QP R F    +  G 
Sbjct: 6   PAYYNADAVRQVLSWPLVNRAVETALVAIVKQDAETHPQSTSFACQPKRSFTACGKEPGR 65

Query: 68  VLLSMPGYI-------KRTGPDGEDS---LAIKVVTSFTDNKVKG--LPSVLATVLLYNT 115
           +L +MP Y+        ++  D + S   LA K+VTSF +N  +   LPS+ A VLL++ 
Sbjct: 66  ILFTMPAYVGNYSLESPKSPGDAQQSRSTLACKLVTSFRENPARDPPLPSIHAHVLLFDN 125

Query: 116 DNGKLKVVMEGTEITKWRTAAASVVATKHL-FGRSG-----DKDLVLAIMGSGAQAYIHA 169
             G+L  +MEGT++T WRT +AS+VATK+L F R G     ++ + +AI+G G Q  +HA
Sbjct: 126 QTGQLSAIMEGTDLTTWRTVSASLVATKYLYFRRFGSQAELERSINVAIVGCGVQGQLHA 185

Query: 170 KAFHASLKLKK---YNRGLTEGTV 190
            AF A+ ++K+   YNR L +  V
Sbjct: 186 AAFCANFRVKQLNLYNRTLAKAQV 209

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156353422|ref|XP_001623065.1| predicted protein [Nematostella vectensis] gi|156209719|gb|EDO30965.1| predicted protein [Nematostella vectensis]

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 101/171 (59%), Gaps = 20/171 (11%)

Query: 21  FLSDEQVRDLLDWESLVPAIESVMVKVSKKE---VIQPARLFMRIPEVNGVLLSMPGYIK 77
           F+   ++R +L ++ L+PAIE  +V  S +E   V+QP R  + I + NG+ L MP    
Sbjct: 6   FIEGSEIRRVLTYDELIPAIEKALVNFSDREHGDVVQPLRSVVPITKQNGLFLVMPALSA 65

Query: 78  RTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAA 137
           +     E++LA K+VT +  N  KGLPS  A V+L++  NG L  +++G  IT+ RTAAA
Sbjct: 66  K-----EEALATKIVTVYPGNAEKGLPSHQAVVMLFDPSNGSLISMLDGETITEMRTAAA 120

Query: 138 SVVATKHLFGRSGDKDL-VLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTE 187
           S VATKHL      +D+ VLAI+GSG QA  HA+A        K+ R  TE
Sbjct: 121 SAVATKHL----AKEDVKVLAILGSGVQARSHAEAL-------KHVRNFTE 160

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|195351582|ref|XP_002042313.1| GM13473 [Drosophila sechellia] gi|194124156|gb|EDW46199.1| GM13473 [Drosophila sechellia]

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 110/192 (57%), Gaps = 27/192 (14%)

Query: 19  PLFLSDEQVRDLLDWESLVPAIESVMVKVSKKE--------VIQPARLFMRIPEVNG-VL 69
           P + + + VR++L W  +  A+ES +V + K++          QP R F    +  G +L
Sbjct: 6   PTYYNADAVREVLTWPLVNKAVESALVAIVKEDHKMPSSSFAFQPKRTFTACGKEPGKIL 65

Query: 70  LSMPGYI-------KRTGPDGEDSLAIKVVTSFTDNKVKGLP--SVLATVLLYNTDNGKL 120
           L+MP Y+        R   + E ++A K+VTSF+ N  + LP  S+ A VLL++   G+L
Sbjct: 66  LTMPAYVGNYKLKSPRDPGEVEYTVACKLVTSFSGNPRRDLPLPSIQAHVLLFDYQTGQL 125

Query: 121 KVVMEGTEITKWRTAAASVVATKHLFGR------SGDKDLVLAIMGSGAQAYIHAKAFHA 174
             +MEGT++T WRT +AS+VATK+L+ R        ++++ +AI+G G Q  +HA AF A
Sbjct: 126 SAIMEGTDLTTWRTVSASLVATKYLYFRRFGAQAEQERNINVAIVGCGVQGQLHAAAFCA 185

Query: 175 SLKLKK---YNR 183
             ++++   YNR
Sbjct: 186 HFRVRQLNLYNR 197

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24642678|ref|NP_573173.2| CG4872 [Drosophila melanogaster] gi|18447178|gb|AAL68180.1| GH02315p [Drosophila melanogaster] gi|22832420|gb|AAF48676.2| CG4872 [Drosophila melanogaster] gi|220944132|gb|ACL84609.1| CG4872-PA [synthetic construct] gi|220954036|gb|ACL89561.1| CG4872-PA [synthetic construct]

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 111/195 (56%), Gaps = 30/195 (15%)

Query: 19  PLFLSDEQVRDLLDWESLVPAIESVMVKVSKKE--------VIQPARLFMRIPEVNG-VL 69
           P + + + VR +L W  +  A+ES +V + K+           QP R F+   +  G VL
Sbjct: 6   PAYYNADAVRQVLTWPLVNKAVESALVAIVKQNPETPSTSFAFQPKRTFIPCGKEPGKVL 65

Query: 70  LSMPGYI-----KRTGPDGE-----DSLAIKVVTSFTDNKVKG--LPSVLATVLLYNTDN 117
           L+MP Y+     + +   GE      +LA K+VTSF+ N  +   LPS+ A VLL++   
Sbjct: 66  LTMPAYVGNYRLESSRDPGEVEHTHSTLACKLVTSFSGNPRRDPPLPSIHAHVLLFDNQT 125

Query: 118 GKLKVVMEGTEITKWRTAAASVVATKHLFGR------SGDKDLVLAIMGSGAQAYIHAKA 171
           G+L  +MEGT++T WRT +AS+VATK+L+ R        ++++ +AI+G G Q  +HA A
Sbjct: 126 GQLSAIMEGTDLTTWRTVSASLVATKYLYFRRFGAQAEQERNINVAIVGCGVQGQLHAAA 185

Query: 172 FHASLKLKK---YNR 183
           F A+ ++++   YNR
Sbjct: 186 FCANFRVRQLNLYNR 200

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195567230|ref|XP_002107172.1| GD17316 [Drosophila simulans] gi|194204574|gb|EDX18150.1| GD17316 [Drosophila simulans]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 109/193 (56%), Gaps = 30/193 (15%)

Query: 21  FLSDEQVRDLLDWESLVPAIESVMVKVSKKE--------VIQPARLFMRIPEVNG-VLLS 71
           + S + VR++L W  +  A+ES +V + K++          QP R F    +  G +LL+
Sbjct: 4   YYSADAVREVLTWPLVNKAVESALVAIVKEDPKTPSTSFAFQPKRTFTACGKEPGKILLT 63

Query: 72  MPGYI-----KRTGPDGE-----DSLAIKVVTSFTDNKVKGLP--SVLATVLLYNTDNGK 119
           MP Y+     K     GE      +LA K+VTSF+ N  + LP  S+ A VLL++   G+
Sbjct: 64  MPAYVGNYKLKSPRDPGEVEHTHSTLACKLVTSFSGNPRRDLPLPSIQAHVLLFDNQTGQ 123

Query: 120 LKVVMEGTEITKWRTAAASVVATKHLFGR------SGDKDLVLAIMGSGAQAYIHAKAFH 173
           L  +MEGT++T WRT +AS+VATK+L+ R        ++++ +AI+G G Q  +HA AF 
Sbjct: 124 LSAIMEGTDLTTWRTVSASLVATKYLYFRRFGAQAEQERNINVAIVGCGVQGQLHAAAFC 183

Query: 174 ASLKLKK---YNR 183
           A  ++++   YNR
Sbjct: 184 AHFRVRQLNLYNR 196

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287495|ref|XP_309511.4| AGAP011137-PA [Anopheles gambiae str. PEST] gi|157019678|gb|EAA05323.4| AGAP011137-PA [Anopheles gambiae str. PEST]

 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 95/186 (51%), Gaps = 26/186 (13%)

Query: 11  SSTQPNQPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKE------------VIQPARL 58
           ++T     P+F+ ++QV+ LLDW     AIE   V VS +               QPAR 
Sbjct: 5   AATNTRSRPMFIDEDQVKQLLDWNEARYAIEQSFVSVSNQARDPVARFADQPVSSQPART 64

Query: 59  FMRIPEVNGVLLSMPGYIKRT-----GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLY 113
           F++     GVLL MPG++ +        D   +LA K++TSF  N   GLPS+   V ++
Sbjct: 65  FVQAE--GGVLLCMPGFVGQHRLASGSSDRASTLACKLITSFRKNASIGLPSINGEVFVF 122

Query: 114 NTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGR-------SGDKDLVLAIMGSGAQAY 166
           N+  GKL+ ++E   +T  RTA AS+VAT HLF R        G   + L I+G G Q  
Sbjct: 123 NSTTGKLEAIVEANHLTGIRTATASLVATDHLFLRPARARTPDGTVSIQLGIVGCGFQGM 182

Query: 167 IHAKAF 172
           +HA  F
Sbjct: 183 MHAIGF 188

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195173899|ref|XP_002027722.1| GL22385 [Drosophila persimilis] gi|194114668|gb|EDW36711.1| GL22385 [Drosophila persimilis]

 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 100/191 (52%), Gaps = 27/191 (14%)

Query: 19  PLFLSDEQVRDLLDWESLVPAIESVMVKVSKKE--------VIQPARLFMRIPEVNGVLL 70
           PL+ S E VR LL W  +  A+ES +  V   +        V QP R      +    L 
Sbjct: 7   PLYYSAETVRRLLTWPLVNEAVESALKAVVSSQNRPPNAAYVNQPKRSITACKDPGQFLF 66

Query: 71  SMPGYIKR-TGPDG----------EDSLAIKVVTSFTDNKVKG--LPSVLATVLLYNTDN 117
           +MP ++   T P              +LA KVV+SF+ N  +   LPS+ A +LL++   
Sbjct: 67  TMPAFVGNFTLPSDCYVGDAANVTRSTLACKVVSSFSSNPQQEPPLPSINANILLFSIQT 126

Query: 118 GKLKVVMEGTEITKWRTAAASVVATKHLFGR------SGDKDLVLAIMGSGAQAYIHAKA 171
           G+L  +M GT++T WRT AAS+VATK+L+ R        ++++ +AI+G G Q  +HA A
Sbjct: 127 GELTAIMAGTDVTTWRTVAASIVATKYLYFRRFGPSAEHEREITVAIIGCGVQGKMHASA 186

Query: 172 FHASLKLKKYN 182
           F +  K+K+ N
Sbjct: 187 FCSMFKVKQLN 197

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
MGI|MGI:102675	313	Crym "crystallin, mu" [Mus mus	0.763	0.546	0.349	2.9e-22
RGD|620943	313	Crym "crystallin, mu" [Rattus	0.687	0.492	0.355	7.6e-22
FB|FBgn0030799	355	CG4872 [Drosophila melanogaste	0.660	0.416	0.365	2.1e-21
UNIPROTKB|Q14894	314	CRYM "Thiomorpholine-carboxyla	0.687	0.490	0.359	3.6e-21
UNIPROTKB|Q2KHX6	314	CRYM "Thiomorpholine-carboxyla	0.651	0.464	0.371	6.5e-21
UNIPROTKB|F1RPC8	314	CRYM "Uncharacterized protein"	0.763	0.544	0.336	9.5e-21
UNIPROTKB|E2RCL5	314	CRYM "Uncharacterized protein"	0.651	0.464	0.364	2.9e-20
UNIPROTKB|H9KVC2	272	CRYM "Thiomorpholine-carboxyla	0.535	0.441	0.395	3.6e-20
UNIPROTKB|E1C5W9	314	CRYM "Uncharacterized protein"	0.665	0.474	0.354	7e-20
UNIPROTKB|Q28488	314	CRYM "Thiomorpholine-carboxyla	0.763	0.544	0.331	2.9e-19

MGI|MGI:102675 Crym "crystallin, mu" [Mus musculus (taxid:10090)]

 Score = 211 (79.3 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
 Identities = 65/186 (34%), Positives = 89/186 (47%)

Query:    19 PLFLSDEQVRDLLDWESL-VPAIXXXXXXXXXX---XXIQPARLFMRIPEVNGVLLSMPG 74
             P FLS E+V+D L   SL +P +               +QP R  + + +  G L  MP 
Sbjct:     5 PAFLSAEEVQDHLRSSSLLIPPLEAALANFSKGPDGGVMQPVRTVVPVAKHRGFLGVMPA 64

Query:    75 YIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRT 134
             Y        ED+L  K+VT +  +    +PS  A+VLL++  NG L  VM+G  IT  RT
Sbjct:    65 YSA-----AEDALTTKLVTFYEGHSNTAVPSHQASVLLFDPSNGSLLAVMDGNVITAKRT 119

Query:   135 AAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNRGLTEGTVT 191
             AA S +ATK L     D   VL I+G+G QAY H + F      K+   +NR        
Sbjct:   120 AAVSAIATKLLKPPGSD---VLCILGAGVQAYSHYEIFTEQFSFKEVRMWNRTRENAEKF 176

Query:   192 GSTKKG 197
              ST +G
Sbjct:   177 ASTVQG 182

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0007605 "sensory perception of sound" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0042403 "thyroid hormone metabolic process" evidence=IMP

GO:0042562 "hormone binding" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0047127 "thiomorpholine-carboxylate dehydrogenase activity" evidence=IEA

GO:0050661 "NADP binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070324 "thyroid hormone binding" evidence=ISO

GO:0070327 "thyroid hormone transport" evidence=ISO

RGD|620943 Crym "crystallin, mu" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
 Identities = 59/166 (35%), Positives = 82/166 (49%)

Query:    19 PLFLSDEQVRDLLDWESL-VPAIXXXXXXXXXX---XXIQPARLFMRIPEVNGVLLSMPG 74
             P FLS ++V+D L   SL +P +               +QP R  + + +  G L  MP 
Sbjct:     5 PAFLSADEVQDHLRSSSLLIPPLEAALANFSKGPDGGVMQPVRTVVPVAKHRGFLGVMPA 64

Query:    75 YIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRT 134
             Y        ED+L  K+VT +  +    +PS  A+VLL++  NG L  VM+G  IT  RT
Sbjct:    65 YSA-----AEDALTTKLVTFYEGHSNNAVPSHQASVLLFDPSNGSLLAVMDGNVITAKRT 119

Query:   135 AAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK 180
             AA S +ATK L     D   VL I+G+G QAY H + F      K+
Sbjct:   120 AAVSAIATKFLKPPGSD---VLCILGAGVQAYSHYEIFTEQFSFKE 162

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0003714 "transcription corepressor activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006839 "mitochondrial transport" evidence=IDA

GO:0007605 "sensory perception of sound" evidence=ISO

GO:0009725 "response to hormone stimulus" evidence=IEP

GO:0033280 "response to vitamin D" evidence=IEP

GO:0042403 "thyroid hormone metabolic process" evidence=ISO

GO:0042562 "hormone binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0047127 "thiomorpholine-carboxylate dehydrogenase activity" evidence=IEA

GO:0050661 "NADP binding" evidence=ISO

GO:0070324 "thyroid hormone binding" evidence=ISO

GO:0070327 "thyroid hormone transport" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

FB|FBgn0030799 CG4872 [Drosophila melanogaster (taxid:7227)]

 Score = 229 (85.7 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
 Identities = 61/167 (36%), Positives = 95/167 (56%)

Query:    35 SLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNG-VLLSMPGYI-----KRTGPDGE---- 84
             +LV  +             QP R F+   +  G VLL+MP Y+     + +   GE    
Sbjct:    30 ALVAIVKQNPETPSTSFAFQPKRTFIPCGKEPGKVLLTMPAYVGNYRLESSRDPGEVEHT 89

Query:    85 -DSLAIKVVTSFTDNKVKG--LPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVA 141
               +LA K+VTSF+ N  +   LPS+ A VLL++   G+L  +MEGT++T WRT +AS+VA
Sbjct:    90 HSTLACKLVTSFSGNPRRDPPLPSIHAHVLLFDNQTGQLSAIMEGTDLTTWRTVSASLVA 149

Query:   142 TKHL-FGRSG-----DKDLVLAIMGSGAQAYIHAKAFHASLKLKKYN 182
             TK+L F R G     ++++ +AI+G G Q  +HA AF A+ ++++ N
Sbjct:   150 TKYLYFRRFGAQAEQERNINVAIVGCGVQGQLHAAAFCANFRVRQLN 196

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q14894 CRYM "Thiomorpholine-carboxylate dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 202 (76.2 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
 Identities = 60/167 (35%), Positives = 81/167 (48%)

Query:    19 PLFLSDEQVRDLLDWESL-VPAIXXXXXXXXXX---XXIQPARLFMRIPEVNGVLLSMPG 74
             P FLS  +V + L   SL +P +               +QP R  + + +  G L  MP 
Sbjct:     5 PAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGVMPA 64

Query:    75 YIKRTGPDGEDSLAIKVVTSFTDNKVKGL-PSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
             Y        ED+L  K+VT + D  +  + PS  ATVLL+   NG L  VM+G  IT  R
Sbjct:    65 YSA-----AEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKR 119

Query:   134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK 180
             TAA S +ATK L   S +   VL I+G+G QAY H + F      K+
Sbjct:   120 TAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEIFTEQFSFKE 163

GO:0047127 "thiomorpholine-carboxylate dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0042403 "thyroid hormone metabolic process" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0070324 "thyroid hormone binding" evidence=IDA;IMP

GO:0070327 "thyroid hormone transport" evidence=IMP

GO:0050661 "NADP binding" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q2KHX6 CRYM "Thiomorpholine-carboxylate dehydrogenase" [Bos taurus (taxid:9913)]

 Score = 200 (75.5 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
 Identities = 59/159 (37%), Positives = 79/159 (49%)

Query:    19 PLFLSDEQVRDLLDWESLVPAIXXXXXXXXXXX----XIQPARLFMRIPEVNGVLLSMPG 74
             P+FLS   V+D L   SL+ A                 +QP R  + + +  G L  MP 
Sbjct:     5 PVFLSAADVQDHLRSSSLLIAPLETALANFSSGPDGGVVQPVRTVVPVAKHRGFLGVMPA 64

Query:    75 YIKRTGPDGEDSLAIKVVTSFTDNKVKG-LPSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
             Y        ED+L  K+VT + D+     +PS  ATVLL+   NG L  VM+G  IT  R
Sbjct:    65 YSA-----AEDALTTKLVTFYEDHSATSTVPSHQATVLLFQPSNGSLLAVMDGNVITAKR 119

Query:   134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAF 172
             TAA S +ATK L   + +   VL I+G+G QAY H + F
Sbjct:   120 TAAVSAIATKFLKPPNSE---VLCILGAGVQAYSHYEVF 155

GO:0070327 "thyroid hormone transport" evidence=IEA

GO:0070324 "thyroid hormone binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042403 "thyroid hormone metabolic process" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0047127 "thiomorpholine-carboxylate dehydrogenase activity" evidence=IEA

UNIPROTKB|F1RPC8 CRYM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 202 (76.2 bits), Expect = 9.5e-21, Sum P(2) = 9.5e-21
 Identities = 63/187 (33%), Positives = 89/187 (47%)

Query:    19 PLFLSDEQVRDLLDWESL-VPAIXXXXXXXXXX---XXIQPARLFMRIPEVNGVLLSMPG 74
             P FLS   V+D L   SL +P +               +QP R  + + + +G L  MP 
Sbjct:     5 PAFLSAADVQDHLRSSSLLIPPLEAALANFSSGPDGGVVQPVRTVVPVAKHSGFLGVMPA 64

Query:    75 YIKRTGPDGEDSLAIKVVTSFTDNK-VKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
             Y        ED+L  K+VT +  ++    +PS  ATVLL+   NG L  VM+G  IT  R
Sbjct:    65 YSA-----AEDALTTKLVTFYEGHRSTSTVPSHQATVLLFEPSNGSLLAVMDGNVITAKR 119

Query:   134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNRGLTEGTV 190
             TAA S +ATK L   + +   VL I+G+G QAY H + F      K+   +NR       
Sbjct:   120 TAAVSAIATKFLKPPNSE---VLCILGAGVQAYSHYEVFTEQFSFKEVRIWNRTKENAEK 176

Query:   191 TGSTKKG 197
               +T +G
Sbjct:   177 FANTVQG 183

GO:0070327 "thyroid hormone transport" evidence=IEA

GO:0070324 "thyroid hormone binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042403 "thyroid hormone metabolic process" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|E2RCL5 CRYM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 195 (73.7 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
 Identities = 58/159 (36%), Positives = 79/159 (49%)

Query:    19 PLFLSDEQVRDLLDWESL-VPAIXXXXXXXXXX---XXIQPARLFMRIPEVNGVLLSMPG 74
             P FLS  +V++ L   SL +P +               +QP R  + + +  G L  MP 
Sbjct:     5 PAFLSAAEVQEHLRSSSLLIPPLEAALANFSSGPDGGVMQPVRTVVPVAKHRGFLGVMPA 64

Query:    75 YIKRTGPDGEDSLAIKVVTSFTDNKVKG-LPSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
             Y        ED+L  K+VT +  +     +PS  ATVLL+   NG L  VM+G  IT  R
Sbjct:    65 YSA-----AEDALTTKLVTFYEGHSTTSTVPSHQATVLLFEPSNGSLLAVMDGNVITAKR 119

Query:   134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAF 172
             TAA S +ATK L   S +   VL I+G+G QAY H + F
Sbjct:   120 TAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEVF 155

GO:0070327 "thyroid hormone transport" evidence=IEA

GO:0070324 "thyroid hormone binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042403 "thyroid hormone metabolic process" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|H9KVC2 CRYM "Thiomorpholine-carboxylate dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
 Identities = 51/129 (39%), Positives = 68/129 (52%)

Query:    53 IQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGL-PSVLATVL 111
             +QP R  + + +  G L  MP Y        ED+L  K+VT + D  +  + PS  ATVL
Sbjct:     1 MQPVRTVVPVTKHRGYLGVMPAYSA-----AEDALTTKLVTFYEDRGITSVVPSHQATVL 55

Query:   112 LYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
             L+   NG L  VM+G  IT  RTAA S +ATK L   S +   VL I+G+G QAY H + 
Sbjct:    56 LFEPSNGTLLAVMDGNVITAKRTAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEI 112

Query:   172 FHASLKLKK 180
             F      K+
Sbjct:   113 FTEQFSFKE 121

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0042403 "thyroid hormone metabolic process" evidence=IEA

GO:0042562 "hormone binding" evidence=IEA

UNIPROTKB|E1C5W9 CRYM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 192 (72.6 bits), Expect = 7.0e-20, Sum P(2) = 7.0e-20
 Identities = 57/161 (35%), Positives = 80/161 (49%)

Query:    16 NQPPLFLSDEQVRDLLDWESLV-PAIXXXX---XXXXXXXXIQPARLFMRIPEVNGVLLS 71
             ++PP+F+S  +V  LL   SL+ P +                QP R  + +    G L  
Sbjct:     3 SEPPVFISAAEVERLLPRASLLLPGLEAALCNFSAGAAGGVEQPLRAVVPVRPHGGFLGV 62

Query:    72 MPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITK 131
             MP Y        +D+L  K+VT +        PS  ATVLL++   G L+ V++GT IT 
Sbjct:    63 MPAYSA-----ADDALTTKLVTFYEHRGDSAAPSHRATVLLFDPRCGSLRAVLDGTVITA 117

Query:   132 WRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAF 172
              RTAA S +ATK L  RS +   VL I+G+G QA  H + F
Sbjct:   118 KRTAAVSAIATKLLMPRSAE---VLCILGAGVQARSHYEIF 155

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0042403 "thyroid hormone metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0070324 "thyroid hormone binding" evidence=IEA

GO:0070327 "thyroid hormone transport" evidence=IEA

UNIPROTKB|Q28488 CRYM "Thiomorpholine-carboxylate dehydrogenase" [Macropus fuliginosus (taxid:9316)]

 Score = 188 (71.2 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
 Identities = 62/187 (33%), Positives = 83/187 (44%)

Query:    19 PLFLSDEQVRDLLDWES-LVPAIXXXXXXXXXXXX---IQPARLFMRIPEVNGVLLSMPG 74
             P FL  E V   L   S L+PA+               +QP R  + + +  G L  MP 
Sbjct:     5 PAFLRSEDVERYLGSSSILLPALEKALANFSSGSEGGVVQPVRTVIPVAKHQGFLGIMPV 64

Query:    75 YIKRTGPDGEDSLAIKVVTSFTD-NKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
             Y        ED+L  K+VT +   +     PS   TVL ++  NG L  +M+G  IT  R
Sbjct:    65 YSA-----SEDALTTKLVTFYEGMSPTSTAPSHQTTVLFFDPSNGSLLSIMDGNIITAKR 119

Query:   134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNRGLTEGTV 190
             TAA S +ATK L   S +   VL I+G+G QAY H + F      K+   +NR       
Sbjct:   120 TAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEIFKEQFSFKEVRIWNRTKKNAEK 176

Query:   191 TGSTKKG 197
                T KG
Sbjct:   177 FAQTVKG 183

GO:0008473 "ornithine cyclodeaminase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.3.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	224
COG2423	330	COG2423, COG2423, Predicted ornithine cyclodeamina	2e-34
pfam02423	313	pfam02423, OCD_Mu_crystall, Ornithine cyclodeamina	6e-28
PRK06046	326	PRK06046, PRK06046, alanine dehydrogenase; Validat	9e-23
PRK08618	325	PRK08618, PRK08618, ornithine cyclodeaminase; Vali	1e-22
PRK07340	304	PRK07340, PRK07340, ornithine cyclodeaminase; Vali	7e-22
PRK06141	314	PRK06141, PRK06141, ornithine cyclodeaminase; Vali	3e-21
TIGR02371	325	TIGR02371, ala_DH_arch, alanine dehydrogenase, Arc	2e-17
TIGR03944	327	TIGR03944, dehyd_SbnB_fam, 2,3-diaminopropionate b	2e-13
PRK08291	330	PRK08291, PRK08291, ectoine utilization protein Eu	1e-12
TIGR02992	326	TIGR02992, ectoine_eutC, ectoine utilization prote	1e-11
PRK07589	346	PRK07589, PRK07589, ornithine cyclodeaminase; Vali	9e-10
PRK06823	315	PRK06823, PRK06823, ornithine cyclodeaminase; Vali	2e-07
PRK06199	379	PRK06199, PRK06199, ornithine cyclodeaminase; Vali	0.002

>gnl|CDD|225280 COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

 Score =  125 bits (315), Expect = 2e-34
 Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 8/163 (4%)

Query: 20  LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
           LFLS+++VR LLD +  V A+E      +   V  P RL +  P  +G    M  Y+   
Sbjct: 5   LFLSEDEVRALLDMDGAVDAVEEAFRAQADGRVAMPPRLRLDPPSFSGDFRIMLMYLP-- 62

Query: 80  GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
              G D   +K+V    DN  +GLP+V   ++L++ + G+   +++ T +T  RTAAAS 
Sbjct: 63  ---GGDVAGVKIVGVHPDNPARGLPTVSGVIVLFDAETGEPLALLDATRLTALRTAAASA 119

Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKYN 182
           VA K+L  R       LAI+G+GAQA    +A  A   +++  
Sbjct: 120 VAAKYL-ARKDAS--TLAIIGAGAQARTQLEALKAVRDIREIR 159

Length = 330

>gnl|CDD|217026 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin family

 Score =  107 bits (268), Expect = 6e-28
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 8/164 (4%)

Query: 17  QPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYI 76
              + L+   V +    + L   +E+   + +      P R+ +   +  GV+ +MP Y+
Sbjct: 1   VVTMMLTRSDVGEETFLDDLANYVEAAFRRWANGAFDMPPRVALHSRDGRGVIEAMPAYL 60

Query: 77  KRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAA 136
                 G      K V    +N  +GLP+V AT +L + D G    +M+ T +T  RTAA
Sbjct: 61  G-----GLKGAGFKWVNGHPENPDRGLPTVTATGVLNDPDTGYPLALMDATYLTALRTAA 115

Query: 137 ASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK 180
           AS VA K+L          LAI+G+GAQA   A+A  A L +++
Sbjct: 116 ASAVAAKYL-APPDAS--TLAIIGAGAQAEFQAEALSAVLPIEE 156

This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina. Length = 313

>gnl|CDD|180367 PRK06046, PRK06046, alanine dehydrogenase; Validated

 Score = 93.6 bits (233), Expect = 9e-23
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 10/154 (6%)

Query: 20  LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
           L+L+ E V+ LLD +S + A+E    +    +V  P + ++   + NG L +MP Y++  
Sbjct: 4   LWLTQEDVKSLLDMDSAIEAVERAFRQHGLGKVQMPPKSYLYFEKYNGDLRTMPAYLE-- 61

Query: 80  GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
                D   +K+V     N  +GLP+V+A ++L + + G    +M+GT +T  RT AA  
Sbjct: 62  ---ELDIAGVKIVNVHPGNPDRGLPTVMAVIILNSPETGFPLAIMDGTYLTDMRTGAAGG 118

Query: 140 VATKHLFGRSGDKDL-VLAIMGSGAQAYIHAKAF 172
           VA K+L      KD  V+ I+G+G QA     A 
Sbjct: 119 VAAKYL----ARKDSKVVGIIGAGNQARTQLLAL 148

Length = 326

>gnl|CDD|236313 PRK08618, PRK08618, ornithine cyclodeaminase; Validated

 Score = 93.2 bits (232), Expect = 1e-22
 Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 11/167 (6%)

Query: 20  LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
           L LS E  + L +    + A +  +   S+ + I P R  +  P  N   L MPGY    
Sbjct: 2   LVLSAEDQKKLFNMNEAIEADKEALKAYSEGKTITPLRTNLPFPNENNTSLIMPGYA--- 58

Query: 80  GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
             +G ++L +K+V+   +NK KG P++  TV+L + + G++  +++GT +T+ RT A S 
Sbjct: 59  --EGLEALGLKIVSVVPENKKKGKPTIPGTVILSDFETGEVLAILDGTYLTQIRTGALSG 116

Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
           VATK+L  R   K   L ++G+G QA    +A  A   +++   Y+R
Sbjct: 117 VATKYL-AREDAK--TLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR 160

Length = 325

>gnl|CDD|235996 PRK07340, PRK07340, ornithine cyclodeaminase; Validated

 Score = 90.8 bits (226), Expect = 7e-22
 Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 13/148 (8%)

Query: 30  LLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAI 89
           LL + +L  A+ + ++  +   +  P RL + +    GVLLSMP     +  D    LAI
Sbjct: 13  LLPYPALADALAAALLDYAAGRIQSPERLVVPLQG-GGVLLSMPA----SAAD----LAI 63

Query: 90  -KVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGR 148
            K+VT    N  +GLP++   V++ +   G+   +++G  +T  RTAA S++A + L   
Sbjct: 64  TKLVTVCPGNAARGLPTIQGEVVVADAATGERLFLLDGPTVTGRRTAAVSLLAARTLAPA 123

Query: 149 SGDKDLVLAIMGSGAQAYIHAKAFHASL 176
               DL+  ++G+G QA  H +AF A L
Sbjct: 124 P-PGDLL--LIGTGVQARAHLEAFAAGL 148

Length = 304

>gnl|CDD|180421 PRK06141, PRK06141, ornithine cyclodeaminase; Validated

 Score = 89.2 bits (222), Expect = 3e-21
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 17/159 (10%)

Query: 20  LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIP---EVNGVLLSMPGYI 76
           L +  EQ R  L + +L+ A+     +      + P R    +    E    LL MP + 
Sbjct: 2   LVIDAEQTRQALPFPALIEALRDAFAR----GCVMPVRHVHSLEVPGEAQATLLLMPAW- 56

Query: 77  KRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAA 136
                +    + +K VT F  N  +GLP + +T LL++   G+   +++GTE+T  RTAA
Sbjct: 57  -----NEGRYIGVKAVTVFPGNPARGLPGLHSTYLLFDGRTGEPLALVDGTELTARRTAA 111

Query: 137 ASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHAS 175
           AS +A  +L  +   + LV+   G+G  A + A A HAS
Sbjct: 112 ASALAASYLARKDASRLLVV---GTGRLASLLALA-HAS 146

Length = 314

>gnl|CDD|131424 TIGR02371, ala_DH_arch, alanine dehydrogenase, Archaeoglobus fulgidus type

 Score = 79.2 bits (195), Expect = 2e-17
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 8/152 (5%)

Query: 20  LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
           L L+ E+V  LL+ +  + A+E    + +  +V  P ++++     NG L  MP Y+   
Sbjct: 3   LVLTQEEVESLLNMDDCMKAVEGAFRQEALGKVQMPPKMYLFFRRYNGDLRVMPAYL--- 59

Query: 80  GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
             +  +   +K V     N  + LP+V+A ++L + + G    +M+GT IT  RT AA  
Sbjct: 60  --EELEMAGVKCVNVHPGNPDRHLPTVMALIILVSPETGFPIALMDGTYITDMRTGAAGG 117

Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
           VA K+L  +      VL I+G+G QA+   +A
Sbjct: 118 VAAKYLARKDSS---VLGIIGAGRQAWTQLEA 146

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. Length = 325

>gnl|CDD|188459 TIGR03944, dehyd_SbnB_fam, 2,3-diaminopropionate biosynthesis protein SbnB

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 13/160 (8%)

Query: 20  LFLSDEQVRDLL-DWES-LVPAIESVMVKVSKKEVIQPARLFMRIPE--VNGVLLSMPGY 75
           L+L+   V  LL   E  L+  +E   +  +  + +QP   F+R P+   N ++ ++P Y
Sbjct: 2   LYLNGADVEALLAGREQALIDLVEEAYLAHAAGDTVQPDSPFLRFPDEPANRII-ALPAY 60

Query: 76  IKRTGPDGEDSLA-IKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRT 134
           +      G+  +A IK + SF  N  +GLP   A ++L + D G    ++EG+ I+  RT
Sbjct: 61  L-----GGDFPVAGIKWIASFPGNPQRGLPRASAVIILNDPDTGYPVAILEGSLISAMRT 115

Query: 135 AAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHA 174
           AA++ +A +HL    G     + I+G G  A    +   A
Sbjct: 116 AASAALAARHLAAGRGFTR--VGIIGCGPIAREILRFLLA 153

Members of this protein family are probable NAD-dependent dehydrogenases related to the alanine dehydrogenase of Archaeoglobus fulgidus (see TIGR02371, PDB structure 1OMO and PMID:15313611) and more distantly to ornithine cyclodeaminase. Members include the staphylobactin biosynthesis protein SbnB and tend to occur in contexts suggesting non-ribosomal peptide synthesis, always adjacent to (occasionally fused with) a pyridoxal phosphate-dependent enzyme, SbnA. The pair appears to provide 2,3-diaminopropionate for biosynthesis of siderophores or other secondary metabolites [Cellular processes, Biosynthesis of natural products]. Length = 327

>gnl|CDD|236221 PRK08291, PRK08291, ectoine utilization protein EutC; Validated

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 36/165 (21%)

Query: 22  LSDEQVRDL--LDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
           L++ ++R L  LD ++ +  +E+    ++   V  P  L + IPE  G +     YI   
Sbjct: 7   LTEAELRALVPLDLDA-IDCVEAAFAALATGAVAMPPILRLDIPEHRGEVDVKTAYIP-- 63

Query: 80  GPDGEDSLAIKVVTSFTDNKVKGLPS-------------VLATVLLYNTDNGKLKVVMEG 126
              G DS AIKV   F DN   GLPS             ++  +LL   DNG L  V   
Sbjct: 64  ---GLDSFAIKVSPGFFDNPKLGLPSLNGLMVVLSARTGLVEALLL---DNGYLTDV--- 114

Query: 127 TEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
                 RTAAA  VA +HL   + +     A++G+G QA +  +A
Sbjct: 115 ------RTAAAGAVAARHL---AREDASRAAVIGAGEQARLQLEA 150

Length = 330

>gnl|CDD|132037 TIGR02992, ectoine_eutC, ectoine utilization protein EutC

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 12/155 (7%)

Query: 20  LFLSDEQVRDL--LDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIK 77
           L L++ ++R+   LD ++ +  +E+    ++  +V+ P  L + IPE NG +     Y+ 
Sbjct: 2   LILTEAELRECVPLDLDA-IDCVENAFAALATGKVVMPPILRLDIPEHNGEVDVKTAYVP 60

Query: 78  RTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLK-VVMEGTEITKWRTAA 136
                G D  AIKV   F DN   GLPS+   ++L ++  G L+ ++++   +T  RTAA
Sbjct: 61  -----GLDGFAIKVSPGFFDNPKLGLPSLNGMMVLLSSRTGLLQALLLDNGYLTDVRTAA 115

Query: 137 ASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA 171
           A  VA +HL   + +   V+AI G+G QA +  +A
Sbjct: 116 AGAVAARHL---AREDSSVVAIFGAGMQARLQLEA 147

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). Length = 326

>gnl|CDD|236064 PRK07589, PRK07589, ornithine cyclodeaminase; Validated

 Score = 57.2 bits (139), Expect = 9e-10
 Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 10/111 (9%)

Query: 66  NGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVME 125
           +GV+  MP     T  DGE   + K V     N  +GL +V+A  +L + D G   ++ E
Sbjct: 52  DGVIELMP-----TS-DGEL-YSFKYVNGHPKNTRRGLQTVMAFGVLADVDTGYPLLLSE 104

Query: 126 GTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASL 176
            T +T  RTAA S +A K+L  R   +   +A++G+GAQ+   A AF A L
Sbjct: 105 MTLLTALRTAATSALAAKYL-ARPDSR--TMALIGNGAQSEFQALAFKALL 152

Length = 346

>gnl|CDD|136070 PRK06823, PRK06823, ornithine cyclodeaminase; Validated

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 11/149 (7%)

Query: 22  LSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGP 81
           L+ +++    D +     ++   +  S+  V  P    +   + NG      GY++    
Sbjct: 4   LNKQKILAKFDADRATLLLKEGFIAFSQGRVQMPPVQHLLFDQANGDCCIKSGYLQ---- 59

Query: 82  DGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVM--EGTEITKWRTAAASV 139
            G+D   +KV T F DN  +GLPS    +L ++   G+ + ++  EG  +T  RTA A  
Sbjct: 60  -GDDQFVVKVSTGFYDNPAQGLPSNQGLMLAFSAKTGEPQALLLDEGW-LTALRTALAGR 117

Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIH 168
           +  + L  +       + I+G+G QA + 
Sbjct: 118 IVARLLAPQHVSA---IGIVGTGIQARMQ 143

Length = 315

>gnl|CDD|235738 PRK06199, PRK06199, ornithine cyclodeaminase; Validated

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 69  LLSMPGYI----KRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVM 124
            ++MP Y+    +  G        +K   S   N+ KGLP  +   +L + D G    +M
Sbjct: 78  FMAMPAYLGGRFRTAG--------VKWYGSNIANREKGLPRSILMFVLNDADTGAPLAIM 129

Query: 125 EGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHA 174
               ++ +RT A   V  +HL  R   K  V+ ++G G        AF A
Sbjct: 130 SANLLSAYRTGAVPGVGARHL-ARKDSK--VVGLLGPGVMGKTILAAFMA 176

Length = 379

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	100.0
PRK06823	315	ornithine cyclodeaminase; Validated	100.0
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	100.0
PRK07340	304	ornithine cyclodeaminase; Validated	100.0
PRK08618	325	ornithine cyclodeaminase; Validated	100.0
PRK06199	379	ornithine cyclodeaminase; Validated	100.0
PRK06046	326	alanine dehydrogenase; Validated	100.0
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	100.0
PRK06141	314	ornithine cyclodeaminase; Validated	100.0
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	100.0
PRK07589	346	ornithine cyclodeaminase; Validated	100.0
PRK06407	301	ornithine cyclodeaminase; Provisional	100.0
PRK08291	330	ectoine utilization protein EutC; Validated	100.0
KOG3007|consensus	333		99.97
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.27
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.18
PLN00203	519	glutamyl-tRNA reductase	98.18
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.07
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.96
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.94
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.92
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.79
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.67
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.59
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.55
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	97.52
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.5
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.38
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.24
PRK07680	273	late competence protein ComER; Validated	97.22
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.22
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.08
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.99
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.96
PLN02688	266	pyrroline-5-carboxylate reductase	96.93
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.92
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.88
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.86
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.85
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.73
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	96.7
KOG0409|consensus	327		96.65
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.61
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	96.61
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.57
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.56
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.53
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.49
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.49
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.47
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.46
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	96.46
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	96.43
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.38
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.33
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.32
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.31
PRK14982	340	acyl-ACP reductase; Provisional	96.31
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	95.97
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	95.96
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.87
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.85
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	95.78
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.76
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	95.7
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	95.69
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.65
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	95.64
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	95.62
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	95.55
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.52
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	95.49
PRK08507	275	prephenate dehydrogenase; Validated	95.45
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.43
PRK15059	292	tartronate semialdehyde reductase; Provisional	95.41
PRK05479	330	ketol-acid reductoisomerase; Provisional	95.4
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.34
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.32
PRK07417	279	arogenate dehydrogenase; Reviewed	95.31
PRK06545	359	prephenate dehydrogenase; Validated	95.3
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.3
PLN02858	1378	fructose-bisphosphate aldolase	95.24
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.21
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.18
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	95.17
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.16
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.12
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.08
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.02
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	94.95
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.93
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.86
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.82
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	94.78
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	94.77
PLN02858	1378	fructose-bisphosphate aldolase	94.77
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.72
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.64
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	94.6
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.57
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	94.56
PRK08306	296	dipicolinate synthase subunit A; Reviewed	94.56
PLN02494	477	adenosylhomocysteinase	94.53
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	94.51
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	94.47
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.45
PRK13403	335	ketol-acid reductoisomerase; Provisional	94.44
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	94.36
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.26
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.23
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	94.2
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	94.14
PRK00048	257	dihydrodipicolinate reductase; Provisional	94.07
PRK08605	332	D-lactate dehydrogenase; Validated	94.06
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.05
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.03
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	93.99
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	93.95
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	93.93
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.92
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.9
PRK12480	330	D-lactate dehydrogenase; Provisional	93.86
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	93.8
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.74
COG0569	225	TrkA K+ transport systems, NAD-binding component [	93.74
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	93.73
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.66
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.54
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	93.52
PRK08655	437	prephenate dehydrogenase; Provisional	93.26
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.25
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	93.04
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	93.0
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	92.93
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.76
KOG2741|consensus	351		92.74
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	92.69
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	92.46
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	92.31
PRK13243	333	glyoxylate reductase; Reviewed	92.2
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	92.19
PLN03139	386	formate dehydrogenase; Provisional	92.01
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.0
PRK13303	265	L-aspartate dehydrogenase; Provisional	91.98
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	91.98
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	91.91
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.91
PLN02256	304	arogenate dehydrogenase	91.83
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.8
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	91.71
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	91.67
COG0673	342	MviM Predicted dehydrogenases and related proteins	91.66
PRK06223	307	malate dehydrogenase; Reviewed	91.55
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	91.5
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	91.48
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	91.45
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	91.3
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	91.21
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	91.21
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	91.19
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	91.15
PTZ00431	260	pyrroline carboxylate reductase; Provisional	91.15
PRK05562	223	precorrin-2 dehydrogenase; Provisional	91.05
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	90.87
PRK11579	346	putative oxidoreductase; Provisional	90.81
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	90.81
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	90.75
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	90.72
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.49
PRK09496	453	trkA potassium transporter peripheral membrane com	90.36
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	90.23
PTZ00117	319	malate dehydrogenase; Provisional	90.13
PLN02712	667	arogenate dehydrogenase	90.04
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	90.02
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	89.68
PRK07574	385	formate dehydrogenase; Provisional	89.54
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	89.39
PLN02928	347	oxidoreductase family protein	89.14
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	89.06
PRK10206	344	putative oxidoreductase; Provisional	88.97
PTZ00082	321	L-lactate dehydrogenase; Provisional	88.97
PRK08818	370	prephenate dehydrogenase; Provisional	88.74
PRK06436	303	glycerate dehydrogenase; Provisional	88.67
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	88.62
PLN02712	667	arogenate dehydrogenase	88.58
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.44
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	88.42
PRK05225	487	ketol-acid reductoisomerase; Validated	88.38
PLN02602	350	lactate dehydrogenase	88.09
PLN02306	386	hydroxypyruvate reductase	88.05
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	87.99
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	87.82
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	87.15
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	87.11
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	87.08
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.96
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	86.83
PRK09496	453	trkA potassium transporter peripheral membrane com	86.64
PRK06270	341	homoserine dehydrogenase; Provisional	86.55
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	86.52
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	86.35
KOG1370|consensus	434		86.1
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	85.83
PRK10637	457	cysG siroheme synthase; Provisional	85.51
PRK06349	426	homoserine dehydrogenase; Provisional	85.5
PRK10669	558	putative cation:proton antiport protein; Provision	85.48
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	85.39
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	85.27
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	84.98
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	84.69
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	84.36
PRK05442	326	malate dehydrogenase; Provisional	84.26
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	83.85
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	83.85
PRK03562	621	glutathione-regulated potassium-efflux system prot	83.59
PRK11730	715	fadB multifunctional fatty acid oxidation complex	83.58
PLN00112	444	malate dehydrogenase (NADP); Provisional	83.45
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	83.43
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	83.23
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	83.21
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	83.19
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	83.14
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	82.66
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	82.57
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	82.3
PRK03659	601	glutathione-regulated potassium-efflux system prot	82.18
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	81.86
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	81.73
TIGR00036	266	dapB dihydrodipicolinate reductase.	81.42
PRK15076	431	alpha-galactosidase; Provisional	81.41
PTZ00325	321	malate dehydrogenase; Provisional	81.4
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.31
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	81.05
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	80.85
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	80.82
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	80.81
PRK05086	312	malate dehydrogenase; Provisional	80.61
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	80.58
PRK06487	317	glycerate dehydrogenase; Provisional	80.48

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=100.00  E-value=2.5e-49  Score=356.40  Aligned_cols=192  Identities=30%  Similarity=0.467  Sum_probs=167.6

Q ss_pred             CCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCC
Q psy13395         18 PPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTD   97 (224)
Q Consensus        18 ~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~   97 (224)
                      .+++|+++||+++++++++++++|++|..+++|++.+|+|..+.+++.++++++||++.++     .+++|+||+++||+
T Consensus         1 ~~~~Ls~~dV~~~~~~~~~i~~v~~af~~~~~g~~~~p~r~~~~~~~~~~~~~~mpa~~~~-----~~~~gvK~v~~~p~   75 (313)
T PF02423_consen    1 TTRILSRSDVESLLTMDEAIDAVEEAFRAYSQGEAQQPPRIVLPFPDGDGRFLAMPAYLPG-----EPVAGVKWVSVFPG   75 (313)
T ss_dssp             -CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEEEEETTGTEEEEEEEEEETT-----CTEEEEEEEEEETT
T ss_pred             CccccCHHHHHhhcCHHHHHHHHHHHHHHhhccCccCCCEEEeccCCcceEEEEEEEEeCC-----CcEEEEEEEEecCC
Confidence            3789999999999999999999999999999999999999999987557999999999997     67999999999999


Q ss_pred             CCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC
Q psy13395         98 NKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK  177 (224)
Q Consensus        98 N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~  177 (224)
                      |+++|||+++|+++|||++||+|+|+|||++||++||||+|++++|||+|+   ++++++|||+|.||++|++++..+||
T Consensus        76 N~~~glP~~~g~i~L~D~~TG~p~ai~dg~~lT~~RTaA~sala~~~La~~---~~~~l~viGaG~QA~~~~~a~~~~~~  152 (313)
T PF02423_consen   76 NPKRGLPSIQGVILLFDPETGEPLAIMDGTWLTALRTAAVSALAARYLARP---DARTLGVIGAGVQARWHLRALAAVRP  152 (313)
T ss_dssp             CGGGTSSSEEEEEEEEETTT--EEEEEESHHHHHHHHHHHHHHHHHHHS-T---T--EEEEE--SHHHHHHHHHHHHHS-
T ss_pred             ccccCCCceeEEEEEEECCCCCEEEEecccchhhhHHHHHHHHHHHHhCcC---CCceEEEECCCHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999   99999999999999999999999999


Q ss_pred             c---EEEeCCcchHHhhhhcc--CCC-------cccccccCcEEEEeccccc
Q psy13395        178 L---KKYNRGLTEGTVTGSTK--KGM-------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       178 i---~v~~R~~~~a~~~a~~~--~g~-------~~~~v~~advvv~~~~~~~  217 (224)
                      +   +||+|+++++++|+++.  .++       ..+++.+||||+|+|.+..
T Consensus       153 i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~  204 (313)
T PF02423_consen  153 IKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTT  204 (313)
T ss_dssp             -SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SS
T ss_pred             ceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCC
Confidence            7   99999999999999832  243       5788999999999999876

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=100.00  E-value=2.1e-48  Score=350.95  Aligned_cols=191  Identities=21%  Similarity=0.286  Sum_probs=178.7

Q ss_pred             CeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCCC
Q psy13395         19 PLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDN   98 (224)
Q Consensus        19 ~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~N   98 (224)
                      |++|+++||+++++++++|+++|++|+.+++|++.+|+|..+.++.+++.+++||||+++     .+.+|+||+++||+|
T Consensus         1 m~~l~~~~v~~~l~~~~~i~av~~a~~~~~~g~~~~P~r~~~~~~~~~~~~~~mpa~~~~-----~~~~g~K~v~~~p~N   75 (315)
T PRK06823          1 MKILNKQKILAKFDADRATLLLKEGFIAFSQGRVQMPPVQHLLFDQANGDCCIKSGYLQG-----DDQFVVKVSTGFYDN   75 (315)
T ss_pred             CeecCHHHHHHhCCHHHHHHHHHHHHHHHhcCCCcCCCEEEeccCCCCceEEEEeeeeCC-----CCeEEEEEEeecCCC
Confidence            689999999999999999999999999999999999999999887667889999999987     568999999999999


Q ss_pred             CCCCCCceEEEEEEEeCCCCcEEEEE-eCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC
Q psy13395         99 KVKGLPSVLATVLLYNTDNGKLKVVM-EGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK  177 (224)
Q Consensus        99 ~~~glP~~~g~i~L~D~~TG~p~All-Dg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~  177 (224)
                      +.+|||+++|+++|||++||+|+|+| ||++||++||||+|+|+++||+|+   ++++|+|||+|.||++|++++..+|+
T Consensus        76 ~~~glP~~~g~v~l~d~~TG~p~Ail~d~~~lT~~RTaA~sala~~~La~~---d~~~l~iiG~G~qA~~~~~a~~~v~~  152 (315)
T PRK06823         76 PAQGLPSNQGLMLAFSAKTGEPQALLLDEGWLTALRTALAGRIVARLLAPQ---HVSAIGIVGTGIQARMQLMYLKNVTD  152 (315)
T ss_pred             ccCCCCCeeEEEEEEECCCCceEEEEcCCChHHHHHHHHHHHHHHHHhcCC---CCCEEEEECCcHHHHHHHHHHHhcCC
Confidence            99999999999999999999999997 999999999999999999999999   99999999999999999999999999


Q ss_pred             c---EEEeCCcchHHhhhhcc--CCC-------cccccccCcEEEEeccccc
Q psy13395        178 L---KKYNRGLTEGTVTGSTK--KGM-------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       178 i---~v~~R~~~~a~~~a~~~--~g~-------~~~~v~~advvv~~~~~~~  217 (224)
                      +   +||||+++++++|++..  .++       ..+++++||||+|+|.+..
T Consensus       153 i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~  204 (315)
T PRK06823        153 CRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE  204 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC
Confidence            7   99999999999999732  243       4678899999999998754

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=100.00  E-value=3.4e-47  Score=344.15  Aligned_cols=192  Identities=27%  Similarity=0.397  Sum_probs=179.5

Q ss_pred             CCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCC
Q psy13395         18 PPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTD   97 (224)
Q Consensus        18 ~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~   97 (224)
                      +|+||+++||++++++.++++++|++|..+++|++.+|+|..+.++..++.+++|||++++     .+.+|+||++.+|+
T Consensus         1 ~~~~l~~~~v~~~l~~~~~i~~v~~a~~~~~~g~~~~P~r~~~~~~~~~~~~~~mpa~~~~-----~~~~g~K~v~~~p~   75 (325)
T TIGR02371         1 ETLVLTQEEVESLLNMDDCMKAVEGAFRQEALGKVQMPPKMYLFFRRYNGDLRVMPAYLEE-----LEMAGVKCVNVHPG   75 (325)
T ss_pred             CcEEeCHHHHHHhCCHHHHHHHHHHHHHHHhcCCCcCCCEEEeccCCCCCeEEEeeEeeCC-----CCeEEEEEEeecCC
Confidence            4789999999999999999999999999999999999999999886567899999999987     67899999999999


Q ss_pred             CCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC
Q psy13395         98 NKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK  177 (224)
Q Consensus        98 N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~  177 (224)
                      |+.+|||+++|+++|||++||+|+|+|||++||++||||+|+++++||+|+   ++++++|||+|.||++|++++..+++
T Consensus        76 N~~~glp~~~g~i~L~d~~tG~p~ai~d~~~lT~~RTaA~salaa~~La~~---~~~~lgiiG~G~qA~~~l~al~~~~~  152 (325)
T TIGR02371        76 NPDRHLPTVMALIILVSPETGFPIALMDGTYITDMRTGAAGGVAAKYLARK---DSSVLGIIGAGRQAWTQLEALSRVFD  152 (325)
T ss_pred             chhcCCCcceEEEEEeeCCCCCeEEEEeCcchhhHHHHHHHHHHHHHhCCC---CCCEEEEECCCHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999   99999999999999999999999998


Q ss_pred             c---EEEeCCcchHHhhhhc--cCCC-------cccccccCcEEEEeccccc
Q psy13395        178 L---KKYNRGLTEGTVTGST--KKGM-------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       178 i---~v~~R~~~~a~~~a~~--~~g~-------~~~~v~~advvv~~~~~~~  217 (224)
                      +   +||+|++++++.|+++  +.|+       ..+++.+||||+++|.+..
T Consensus       153 ~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~  204 (325)
T TIGR02371       153 LEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK  204 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC
Confidence            6   9999999999999884  3342       5678889999999997654

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=100.00  E-value=1.3e-45  Score=331.07  Aligned_cols=189  Identities=24%  Similarity=0.340  Sum_probs=175.7

Q ss_pred             CCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCC
Q psy13395         18 PPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTD   97 (224)
Q Consensus        18 ~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~   97 (224)
                      .|+||+++||+++|+++++++++|++|+.+++|++.+|+|..+.++ .++.+++||++.++       .+|+||++.||+
T Consensus         1 ~m~~l~~~~v~~~l~~~~~i~~v~~a~~~~~~g~~~~p~r~~~~~~-~~~~~~~mpa~~~~-------~~g~K~~~~~p~   72 (304)
T PRK07340          1 TMPVLDAAETAALLPYPALADALAAALLDYAAGRIQSPERLVVPLQ-GGGVLLSMPASAAD-------LAITKLVTVCPG   72 (304)
T ss_pred             CceEECHHHHHhhCCHHHHHHHHHHHHHHHhcCCCCCCCEEEEecC-CCCEEEEEeeccCC-------ccEEEEEEeCCC
Confidence            3789999999999999999999999999999999999999999874 56899999999653       799999999999


Q ss_pred             CCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC
Q psy13395         98 NKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK  177 (224)
Q Consensus        98 N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~  177 (224)
                      |+.+|||+++|+++|||++||.|+|+|||++||++||||+|++++++|+++   ++++++|||+|.||++|++++..+++
T Consensus        73 N~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT~~RTaA~sala~~~La~~---~~~~v~IiGaG~qa~~~~~al~~~~~  149 (304)
T PRK07340         73 NAARGLPTIQGEVVVADAATGERLFLLDGPTVTGRRTAAVSLLAARTLAPA---PPGDLLLIGTGVQARAHLEAFAAGLP  149 (304)
T ss_pred             CccCCCCcceEEEEEEECCCCcEEEEEcChhHHHHHHHHHHHHHHHHhCCC---CCCEEEEECCcHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999   99999999999999999999999998


Q ss_pred             c---EEEeCCcchHHhhhhcc--CCC------cccccccCcEEEEeccccc
Q psy13395        178 L---KKYNRGLTEGTVTGSTK--KGM------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       178 i---~v~~R~~~~a~~~a~~~--~g~------~~~~v~~advvv~~~~~~~  217 (224)
                      +   +||||+++++++|+++.  .++      ..+++.++||||++|.+.+
T Consensus       150 ~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~  200 (304)
T PRK07340        150 VRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT  200 (304)
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC
Confidence            5   99999999999999853  222      4567889999999998765

>PRK08618 ornithine cyclodeaminase; Validated

Probab=100.00  E-value=2.1e-45  Score=332.17  Aligned_cols=192  Identities=29%  Similarity=0.411  Sum_probs=178.0

Q ss_pred             CeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCCC
Q psy13395         19 PLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDN   98 (224)
Q Consensus        19 ~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~N   98 (224)
                      |+||+++||+++|++.++++++|++|..+++|++.+|+|..+.++.+++.+++||+++++     .+.+|+||+++||+|
T Consensus         1 m~~l~~~~v~~~l~~~~~i~~v~~a~~~~~~g~~~~p~r~~~~~~~~~~~~~~mp~~~~~-----~~~~g~K~~~~~p~n   75 (325)
T PRK08618          1 MLVLSAEDQKKLFNMNEAIEADKEALKAYSEGKTITPLRTNLPFPNENNTSLIMPGYAEG-----LEALGLKIVSVVPEN   75 (325)
T ss_pred             CeEcCHHHHHHhcCHHHHHHHHHHHHHHHhCCCCCCCCEEEeccCCCCCcEEEeeeecCC-----CCeEEEEEEeecCCC
Confidence            689999999999999999999999999999999999999999886567899999999987     568999999999999


Q ss_pred             CCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCCc
Q psy13395         99 KVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKL  178 (224)
Q Consensus        99 ~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~i  178 (224)
                      +.+|+|+++|+++|||++||+|+|+|||++||+|||||+|++++++|+++   ++++++|||+|.||++|++++..++++
T Consensus        76 ~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT~~RTaa~sala~~~la~~---~~~~v~iiGaG~~a~~~~~al~~~~~~  152 (325)
T PRK08618         76 KKKGKPTIPGTVILSDFETGEVLAILDGTYLTQIRTGALSGVATKYLARE---DAKTLCLIGTGGQAKGQLEAVLAVRDI  152 (325)
T ss_pred             cccCCCcceEEEEEEeCCCCceEEEEccchhhhhhHHHHHHHHHHHhcCC---CCcEEEEECCcHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999   999999999999999999999888875


Q ss_pred             ---EEEeCCcchHHhhhhc---cCCC-------cccccccCcEEEEecccccc
Q psy13395        179 ---KKYNRGLTEGTVTGST---KKGM-------ATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       179 ---~v~~R~~~~a~~~a~~---~~g~-------~~~~v~~advvv~~~~~~~~  218 (224)
                         .||||+++++++|+++   ..++       ..+.+.++||||++|...|.
T Consensus       153 ~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~p  205 (325)
T PRK08618        153 ERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKTP  205 (325)
T ss_pred             cEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCCc
Confidence               9999999999999973   2232       35567899999999998764

>PRK06199 ornithine cyclodeaminase; Validated

Probab=100.00  E-value=2.7e-45  Score=338.09  Aligned_cols=194  Identities=20%  Similarity=0.259  Sum_probs=171.8

Q ss_pred             CCCeeeCHHHHHh--cCChhHHHHHHHHHHHhhhcCCccCCce-----------------eEeeecCCCcEEEEeceeec
Q psy13395         17 QPPLFLSDEQVRD--LLDWESLVPAIESVMVKVSKKEVIQPAR-----------------LFMRIPEVNGVLLSMPGYIK   77 (224)
Q Consensus        17 ~~~~~Ls~~dV~~--ll~~~~~i~ale~af~~~~~g~~~~P~R-----------------~~~~~~~~~g~~~~Mpa~~~   77 (224)
                      ..|++|+++||++  +++++++|+++|++|..+++|++.+|+|                 ..++.+.+++.+++||+|++
T Consensus         7 ~~~~~L~~~~v~~~~~l~~~~~i~ave~a~~~~~~g~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~mpa~~~   86 (379)
T PRK06199          7 IDFIYLSEQDMIRAGVTDMAACVDTMEEMFGLLYQGDYRMAGANNDSHGAMITFPENSPFPTMPKPTPDRRFMAMPAYLG   86 (379)
T ss_pred             eEEEEECHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCccccccccCCcccccccCccCCccccccCCCCCeEEEeeeecC
Confidence            4699999999998  6999999999999999999998776443                 23333334679999999998


Q ss_pred             CCCCCCCCeEEEEEEeecCCCCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEE
Q psy13395         78 RTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLA  157 (224)
Q Consensus        78 ~~~~~~~~~~GvK~vs~~p~N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~  157 (224)
                      +.    .+.+|+||+++||+|+.+|+|+++|+++|||++||+|+|+|||++||++||||+|++++|+|+|+   ++++|+
T Consensus        87 ~~----~~~~gvK~v~~~p~N~~~glp~~~g~v~L~D~~TG~p~Ai~dg~~lTa~RTaA~salaa~~LAr~---da~~l~  159 (379)
T PRK06199         87 GR----FRTAGVKWYGSNIANREKGLPRSILMFVLNDADTGAPLAIMSANLLSAYRTGAVPGVGARHLARK---DSKVVG  159 (379)
T ss_pred             CC----CceeEEEEeccCCCccccCCCceeEEEEEeeCCCCceEEEEcCcchhhhHHHHHHHHHHHHhccC---CCCEEE
Confidence            61    26799999999999999999999999999999999999999999999999999999999999999   999999


Q ss_pred             EEecCHhHHHHHHHHHHhCC-c---EEEeCCcchHHhhhhcc---C-CC--------cccccccCcEEEEeccccc
Q psy13395        158 IMGSGAQAYIHAKAFHASLK-L---KKYNRGLTEGTVTGSTK---K-GM--------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       158 iiGaG~QA~~hl~a~~~v~~-i---~v~~R~~~~a~~~a~~~---~-g~--------~~~~v~~advvv~~~~~~~  217 (224)
                      |||+|.||++|++++.++|| |   +||||+++++++|+++.   . |+        ..+++.+||||+|+|.+..
T Consensus       160 iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~~  235 (379)
T PRK06199        160 LLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGET  235 (379)
T ss_pred             EECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCCC
Confidence            99999999999999999997 7   99999999999999732   1 32        5677899999999997543

>PRK06046 alanine dehydrogenase; Validated

Probab=100.00  E-value=4.7e-44  Score=323.57  Aligned_cols=191  Identities=28%  Similarity=0.440  Sum_probs=175.6

Q ss_pred             CCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCC
Q psy13395         18 PPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTD   97 (224)
Q Consensus        18 ~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~   97 (224)
                      .|+||+++||+++|+++++++++|++|..+++|++.+|+|..+.+++.+|.+++||+++++     .+.+|+||++.+|+
T Consensus         2 ~~~~l~~~~v~~~l~~~~~i~~~~~a~~~~~~g~~~~p~~~~~~~~~~~~~~~~mpa~~~~-----~~~~g~K~~~~~p~   76 (326)
T PRK06046          2 ETLWLTQEDVKSLLDMDSAIEAVERAFRQHGLGKVQMPPKSYLYFEKYNGDLRTMPAYLEE-----LDIAGVKIVNVHPG   76 (326)
T ss_pred             ccEEeCHHHHHHhCCHHHHHHHHHHHHHHHhcCCCcCCCeeEeccCCCCCeEEEeeEeeCC-----CCeEEEEEEeeCCC
Confidence            4899999999999999999999999999999999999999999887667899999999986     67899999999999


Q ss_pred             CCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC
Q psy13395         98 NKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK  177 (224)
Q Consensus        98 N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~  177 (224)
                      |+.+|+|+++|+|+|||++||+|+|+|||++||++||||+|++++++|+|+   ++++++|||+|.||++|++++..+++
T Consensus        77 N~~~glp~~~g~i~L~d~~tG~p~aild~~~lT~~RTaA~sala~~~La~~---~~~~vgiiG~G~qa~~h~~al~~~~~  153 (326)
T PRK06046         77 NPDRGLPTVMAVIILNSPETGFPLAIMDGTYLTDMRTGAAGGVAAKYLARK---DSKVVGIIGAGNQARTQLLALSEVFD  153 (326)
T ss_pred             CcccCCCceeEEEEEEeCCCCceEEEEcCccHHHHHHHHHHHHHHHHhCCC---CCCEEEEECCcHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999999999999999   99999999999999999999998888


Q ss_pred             c---EEEeCCcchHHhhhhcc---CCC-------cccccccCcEEEEeccccc
Q psy13395        178 L---KKYNRGLTEGTVTGSTK---KGM-------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       178 i---~v~~R~~~~a~~~a~~~---~g~-------~~~~v~~advvv~~~~~~~  217 (224)
                      +   +||+|+++++++|+++.   .+.       ..+.+ .+|||+++|....
T Consensus       154 i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~aDiVv~aTps~~  205 (326)
T PRK06046        154 LEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEAC-DCDILVTTTPSRK  205 (326)
T ss_pred             ceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHh-hCCEEEEecCCCC
Confidence            6   99999999999999742   242       23344 4999999998643

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=100.00  E-value=3e-44  Score=325.07  Aligned_cols=192  Identities=31%  Similarity=0.458  Sum_probs=178.3

Q ss_pred             CCCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecC
Q psy13395         17 QPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFT   96 (224)
Q Consensus        17 ~~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p   96 (224)
                      ..|+||+++||++++.+.++++++|++|..+..+.+.+|++..+..++.++.+.+|+++.+.     ...+|+||++++|
T Consensus         2 ~~~~~Ls~~ev~~l~~~~~~~~~v~~af~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~-----~~~~gvK~v~~~p   76 (330)
T COG2423           2 MMMLFLSEDEVRALLDMDGAVDAVEEAFRAQADGRVAMPPRLRLDPPSFSGDFRIMLMYLPG-----GDVAGVKIVGVHP   76 (330)
T ss_pred             CcceecCHHHHHHHhcchHHHHHHHHHHHHhhcCcccCCccccccCccCCCccceeeeeccC-----CCeEEEEEecCcC
Confidence            36899999999999999999999999999999999999999998877778888888888876     5799999999999


Q ss_pred             CCCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhC
Q psy13395         97 DNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASL  176 (224)
Q Consensus        97 ~N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~  176 (224)
                      +|+.+|||+++|+++|||++||.|+++||+++||+|||||+|++|+|||||+   |+++|+|||+|.||++|++++..+|
T Consensus        77 ~N~~~glp~v~g~~~L~d~~TG~plal~d~~~lTa~RTaAasavAa~~LA~~---da~~laiIGaG~qA~~ql~a~~~v~  153 (330)
T COG2423          77 DNPARGLPTVSGVIVLFDAETGEPLALLDATRLTALRTAAASAVAAKYLARK---DASTLAIIGAGAQARTQLEALKAVR  153 (330)
T ss_pred             CccccCCCcceEEEEEEecCCCCEEEEecCccHHHHHHHHHHHHHHHHhccC---CCcEEEEECCcHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999   9999999999999999999999999


Q ss_pred             Cc---EEEeCCcchHHhhhhc---cCCC-------cccccccCcEEEEecccc
Q psy13395        177 KL---KKYNRGLTEGTVTGST---KKGM-------ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       177 ~i---~v~~R~~~~a~~~a~~---~~g~-------~~~~v~~advvv~~~~~~  216 (224)
                      ++   +||+|+++++++|++.   +.+.       +.+++.+||||+|+|...
T Consensus       154 ~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~  206 (330)
T COG2423         154 DIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPST  206 (330)
T ss_pred             CccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCC
Confidence            97   9999999999999973   2221       578888999999999764

>PRK06141 ornithine cyclodeaminase; Validated

Probab=100.00  E-value=1e-43  Score=319.88  Aligned_cols=186  Identities=26%  Similarity=0.389  Sum_probs=169.7

Q ss_pred             CeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCC---CcEEEEeceeecCCCCCCCCeEEEEEEeec
Q psy13395         19 PLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEV---NGVLLSMPGYIKRTGPDGEDSLAIKVVTSF   95 (224)
Q Consensus        19 ~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~---~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~   95 (224)
                      |+||+++||+++|+++++++++|++|+    +++.+|+|..+.++..   ++.+++||+|...      +++|+||+++|
T Consensus         1 m~~l~~~~v~~~l~~~~~i~av~~a~~----~~~~~p~r~~~~~~~~~~~~~~~~~mp~~~~~------~~~g~K~~~~~   70 (314)
T PRK06141          1 MLVIDAEQTRQALPFPALIEALRDAFA----RGCVMPVRHVHSLEVPGEAQATLLLMPAWNEG------RYIGVKAVTVF   70 (314)
T ss_pred             CeecCHHHHHHhCCHHHHHHHHHHHHh----cCCcCCCceEEecCCCCCCCceEEEeeeecCC------CeeEEEEEeec
Confidence            689999999999999999999999996    3578999998887543   5899999999974      58999999999


Q ss_pred             CCCCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHh
Q psy13395         96 TDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHAS  175 (224)
Q Consensus        96 p~N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v  175 (224)
                      |+|+.+|||+++|+++|||++||+|+|+|||++||+|||||+|+++++||+++   ++++++|||+|.||++|++++..+
T Consensus        71 p~N~~~glp~~~g~v~l~d~~tG~p~ai~d~~~lT~~RTaa~sala~~~La~~---~~~~v~iiG~G~~a~~~~~al~~~  147 (314)
T PRK06141         71 PGNPARGLPGLHSTYLLFDGRTGEPLALVDGTELTARRTAAASALAASYLARK---DASRLLVVGTGRLASLLALAHASV  147 (314)
T ss_pred             CCCCcCCCCceEEEEEEEECCCCCEEEEEcCcchhcchhHHHHHHHHHHhCCC---CCceEEEECCcHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999   999999999999999999999998


Q ss_pred             CCc---EEEeCCcchHHhhhhcc--CC--C-----cccccccCcEEEEeccccc
Q psy13395        176 LKL---KKYNRGLTEGTVTGSTK--KG--M-----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       176 ~~i---~v~~R~~~~a~~~a~~~--~g--~-----~~~~v~~advvv~~~~~~~  217 (224)
                      +++   +||||++++++.|+++.  .|  +     ..+++.+||||+++|...+
T Consensus       148 ~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~  201 (314)
T PRK06141        148 RPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTE  201 (314)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCC
Confidence            885   99999999999999852  23  1     3567889999999998764

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=100.00  E-value=2e-43  Score=319.44  Aligned_cols=191  Identities=26%  Similarity=0.414  Sum_probs=177.0

Q ss_pred             CeeeCHHHHHhcCChh-HHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCC
Q psy13395         19 PLFLSDEQVRDLLDWE-SLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTD   97 (224)
Q Consensus        19 ~~~Ls~~dV~~ll~~~-~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~   97 (224)
                      |++|+++||+++++++ ++|+++|++|..+++|++.+|+|..+.+|..++.+++||||+++     .+.+|+||++.||+
T Consensus         1 m~~l~~~~v~~ll~~~~~~i~~v~~a~~~~~~g~~~~p~r~~~~~~~~~~~~~~m~~~~~~-----~~~~g~K~~~~~p~   75 (326)
T TIGR02992         1 ILILTEAELRECVPLDLDAIDCVENAFAALATGKVVMPPILRLDIPEHNGEVDVKTAYVPG-----LDGFAIKVSPGFFD   75 (326)
T ss_pred             CeecCHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCCCCCEEEEecCCCCCeEEEeehhcCC-----CCceEEEEecccCC
Confidence            7899999999999998 79999999999999999999999999987667899999999987     57899999999999


Q ss_pred             CCCCCCCceEEEEEEEeCCCCcEEEE-EeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhC
Q psy13395         98 NKVKGLPSVLATVLLYNTDNGKLKVV-MEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASL  176 (224)
Q Consensus        98 N~~~glP~~~g~i~L~D~~TG~p~Al-lDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~  176 (224)
                      |+++|||+++|+++|||++||.|.++ +|+++||++||+|+|++++++|+++   ++++++|||+|.||++|++++..++
T Consensus        76 N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~lT~~RTaa~~~laa~~la~~---~~~~v~iiGaG~qA~~~~~al~~~~  152 (326)
T TIGR02992        76 NPKLGLPSLNGMMVLLSSRTGLLQALLLDNGYLTDVRTAAAGAVAARHLARE---DSSVVAIFGAGMQARLQLEALTLVR  152 (326)
T ss_pred             ccccCCCceeEEEEEEECCCCCceEEEcCCchHHHHHHHHHHHHHHHHhCCC---CCcEEEEECCCHHHHHHHHHHHHhC
Confidence            99999999999999999999999999 5999999999999999999999999   9999999999999999999999888


Q ss_pred             Cc---EEEeCCcchHHhhhhcc---CCC-------cccccccCcEEEEeccccc
Q psy13395        177 KL---KKYNRGLTEGTVTGSTK---KGM-------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       177 ~i---~v~~R~~~~a~~~a~~~---~g~-------~~~~v~~advvv~~~~~~~  217 (224)
                      ++   +||||+++++++|+++.   .|+       ..+++.+|||||++|.+.+
T Consensus       153 ~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~  206 (326)
T TIGR02992       153 DIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET  206 (326)
T ss_pred             CccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC
Confidence            86   99999999999999742   243       3456889999999998754

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK07589 ornithine cyclodeaminase; Validated

Probab=100.00  E-value=6.8e-43  Score=318.60  Aligned_cols=184  Identities=26%  Similarity=0.301  Sum_probs=165.9

Q ss_pred             CeeeCHHHHHhcCC-------hhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEE
Q psy13395         19 PLFLSDEQVRDLLD-------WESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKV   91 (224)
Q Consensus        19 ~~~Ls~~dV~~ll~-------~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~   91 (224)
                      .++|+++||..+|+       ..++++++|++|..++  ...+|+|..+..  +++.+++||+|.++       .+|+||
T Consensus         2 ~~~l~~~~v~~~l~~~~~~~~~~~~i~al~~a~~~~~--~~~~p~r~~~~~--~~~~~~~Mpa~~~~-------~~gvK~   70 (346)
T PRK07589          2 VRFVSVDDMARLVRRVGVETFLRELADYLEADFRRWQ--EFDKSPRVASHS--PDGVIELMPTSDGE-------LYSFKY   70 (346)
T ss_pred             CcEecHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcc--cccCCCeeeecC--CCCeEEEeeeccCC-------ceEEEE
Confidence            47999999999975       3578999999998654  467899998764  36889999999864       799999


Q ss_pred             EeecCCCCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHH
Q psy13395         92 VTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA  171 (224)
Q Consensus        92 vs~~p~N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a  171 (224)
                      +++||+|+.+|+|+++|+++|||++||+|+|+|||++||+|||||+|+++++||+|+   ++++|+|||+|.||++|+++
T Consensus        71 v~~~p~N~~~glP~i~g~v~L~D~~TG~p~Alldg~~lT~~RTaA~sala~~~Lar~---da~~l~iiGaG~QA~~~l~a  147 (346)
T PRK07589         71 VNGHPKNTRRGLQTVMAFGVLADVDTGYPLLLSEMTLLTALRTAATSALAAKYLARP---DSRTMALIGNGAQSEFQALA  147 (346)
T ss_pred             EeeCCCccccCCCceeEEEEEEECCCCCEEEEEcCccHHHHHHHHHHHHHHHHhccC---CCcEEEEECCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999   99999999999999999999


Q ss_pred             HHHhCCc---EEEeCCcchHHhhhhccC--CC-------cccccccCcEEEEecccc
Q psy13395        172 FHASLKL---KKYNRGLTEGTVTGSTKK--GM-------ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       172 ~~~v~~i---~v~~R~~~~a~~~a~~~~--g~-------~~~~v~~advvv~~~~~~  216 (224)
                      +..+|++   +||||+++++++|+++..  ++       ..+++.+||||+|+|.+.
T Consensus       148 ~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~  204 (346)
T PRK07589        148 FKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK  204 (346)
T ss_pred             HHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC
Confidence            9999997   999999999999997432  43       578889999999999753

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=100.00  E-value=1.6e-42  Score=310.90  Aligned_cols=181  Identities=20%  Similarity=0.270  Sum_probs=164.2

Q ss_pred             CeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCCC
Q psy13395         19 PLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTDN   98 (224)
Q Consensus        19 ~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~N   98 (224)
                      |+||+++||+++|+++++|+++|++|+.+++|++.+|+|..++.  +++.+++||+|.++     .+++|+||++. ++|
T Consensus         1 m~~l~~~dv~~~l~~~~~i~ave~a~~~~~~g~~~~p~r~~~~~--~~~~~~~mpa~~~~-----~~~~g~K~~~~-~~~   72 (301)
T PRK06407          1 MYYISEDDVLRNLNMKECIGALREAFEEYGAGRANSSTRVRTFS--PGHVLNTMPAYMEK-----YHIAGLKTYIA-GRN   72 (301)
T ss_pred             CeecCHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCCCceEEec--CCCcEEEeeEecCC-----CCeeEEEEEec-CCC
Confidence            68999999999999999999999999999999999999998765  36789999999986     67899999885 333


Q ss_pred             CCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCCc
Q psy13395         99 KVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKL  178 (224)
Q Consensus        99 ~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~i  178 (224)
                            .++++++|||++||+|+|+||+++||++||||+|++|+++|+ +   ++++|+|||+|.||++|++++..+|++
T Consensus        73 ------~~~g~v~L~d~~TG~p~Almd~~~lT~~RTaA~salaa~~l~-~---da~~l~iiGaG~QA~~~~~a~~~v~~i  142 (301)
T PRK06407         73 ------GARFVVLLFDVNNPELVAIFEANRLGQIRTGAVTAYATSILH-K---NVENFTIIGSGFQAETQLEGMASVYNP  142 (301)
T ss_pred             ------CccEEEEEEECCCCCEEEEEccchHHHHHHHHHHHHHHHHhh-c---CCcEEEEECCcHHHHHHHHHHHhcCCC
Confidence                  377999999999999999999999999999999999999885 8   899999999999999999999999997


Q ss_pred             ---EEEeCCcchHHhhhhcc---CCC-------cccccccCcEEEEeccccc
Q psy13395        179 ---KKYNRGLTEGTVTGSTK---KGM-------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       179 ---~v~~R~~~~a~~~a~~~---~g~-------~~~~v~~advvv~~~~~~~  217 (224)
                         +||||+++++++|+++.   .|+       ..+++.+||||+|+|.+.+
T Consensus       143 ~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~  194 (301)
T PRK06407        143 KRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT  194 (301)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence               99999999999999742   243       5788899999999999765

>PRK08291 ectoine utilization protein EutC; Validated

Probab=100.00  E-value=1.2e-41  Score=308.12  Aligned_cols=192  Identities=26%  Similarity=0.402  Sum_probs=177.3

Q ss_pred             CCeeeCHHHHHhcCChh-HHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecC
Q psy13395         18 PPLFLSDEQVRDLLDWE-SLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFT   96 (224)
Q Consensus        18 ~~~~Ls~~dV~~ll~~~-~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p   96 (224)
                      +|++|+++||++++++. ++|+++|++|+.+++|++.+|+|..+.++.+++.+++||+|.++     .+++|+||++.||
T Consensus         3 ~m~~l~~~~v~~~l~~~~~~i~~v~~a~~~~~~g~~~~p~r~~~~~~~~~~~~~~mp~~~~~-----~~~~g~K~~~~~~   77 (330)
T PRK08291          3 PMTILTEAELRALVPLDLDAIDCVEAAFAALATGAVAMPPILRLDIPEHRGEVDVKTAYIPG-----LDSFAIKVSPGFF   77 (330)
T ss_pred             ceEEeCHHHHHHHcCchHHHHHHHHHHHHHHhcCCCcCCCEEEeccCCCCCcEEEeecccCC-----CCeeEEEeccCCC
Confidence            58999999999999997 79999999999999999999999999887667899999999987     6789999999999


Q ss_pred             CCCCCCCCceEEEEEEEeCCCCcEEEE-EeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHh
Q psy13395         97 DNKVKGLPSVLATVLLYNTDNGKLKVV-MEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHAS  175 (224)
Q Consensus        97 ~N~~~glP~~~g~i~L~D~~TG~p~Al-lDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v  175 (224)
                      +|+++|||+++|+++|||++||.|.++ +|++.||++||+|+|++++++|+++   ++++++|||+|.||++|+.++..+
T Consensus        78 ~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~lt~~rT~a~~~~a~~~la~~---~~~~v~IiGaG~~a~~~~~al~~~  154 (330)
T PRK08291         78 DNPKLGLPSLNGLMVVLSARTGLVEALLLDNGYLTDVRTAAAGAVAARHLARE---DASRAAVIGAGEQARLQLEALTLV  154 (330)
T ss_pred             CccccCCCcceEEEEEEeCCCCceEEEEcCCchHHHHHHHHHHHHHHHHhCCC---CCCEEEEECCCHHHHHHHHHHHhc
Confidence            999999999999999999999999999 5999999999999999999999999   999999999999999999999988


Q ss_pred             CCc---EEEeCCcchHHhhhhcc---CCC-------cccccccCcEEEEeccccc
Q psy13395        176 LKL---KKYNRGLTEGTVTGSTK---KGM-------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       176 ~~i---~v~~R~~~~a~~~a~~~---~g~-------~~~~v~~advvv~~~~~~~  217 (224)
                      +++   .||||+++++++|+++.   .|+       ..+++.++||||++|.+++
T Consensus       155 ~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~  209 (330)
T PRK08291        155 RPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE  209 (330)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC
Confidence            775   99999999999999842   243       2467889999999998865

>KOG3007|consensus

Probab=99.97  E-value=1.5e-31  Score=233.67  Aligned_cols=194  Identities=26%  Similarity=0.278  Sum_probs=168.3

Q ss_pred             CCCCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeec------CCCcEEEEeceeecCCCCCCCCeEEE
Q psy13395         16 NQPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIP------EVNGVLLSMPGYIKRTGPDGEDSLAI   89 (224)
Q Consensus        16 ~~~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~------~~~g~~~~Mpa~~~~~~~~~~~~~Gv   89 (224)
                      +.-+.||+.+++...|.+..+|..+++-|...+-- ...|.|...++.      ...+.+++||+|.++..   ..+.|+
T Consensus         2 s~ip~flsaeef~s~lss~tLIn~lle~~~~n~~~-~~~e~rlnypv~~~~pss~~~n~ll~MP~ws~~~s---~k~Lgv   77 (333)
T KOG3007|consen    2 SSIPTFLSAEEFYSNLSSQTLINSLLELHESNRLY-QNHEIRLNYPVKKLDPSSADSNSLLFMPVWSKDFS---IKILGV   77 (333)
T ss_pred             CcccccccHHHHHhhcccHHHHHHHHHHhhhhccc-cCCcccccccccccCCccccCCceEEEeeeccccc---cchhhe
Confidence            34567999999999999999999999998876321 234445444432      24568999999998622   478999


Q ss_pred             EEEeecCCCCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHH
Q psy13395         90 KVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHA  169 (224)
Q Consensus        90 K~vs~~p~N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl  169 (224)
                      |.+++||+|...++|.+++.++||++.||..+|.|||+.||..||+++|+++.++|.++   ++..+.|||+|.||+||+
T Consensus        78 klvt~fp~ni~~~lPs~~~~yllfeattgt~LatmdgnvitlyRtasvSalask~l~~~---dS~vL~i~GsG~qA~~hi  154 (333)
T KOG3007|consen   78 KLVTNFPGNINVILPSTGKLYLLFEATTGTALATMDGNVITLYRTASVSALASKRLENP---DSCVLTIFGSGLQAFWHI  154 (333)
T ss_pred             eceeecCCcccccCCCcCceEEEEcCCCcchhhhcccceeeeeehhhhhhhhhhhcCCC---CceEEEEEcccchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999   999999999999999999


Q ss_pred             HHHHHhCC-c---EEEeCCcchHHhhhhcc-------------CCCcccccccCcEEEEecccc
Q psy13395        170 KAFHASLK-L---KKYNRGLTEGTVTGSTK-------------KGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       170 ~a~~~v~~-i---~v~~R~~~~a~~~a~~~-------------~g~~~~~v~~advvv~~~~~~  216 (224)
                      .....++| +   +||||+.++|++|+++.             .....++|..+|||+++|-+-
T Consensus       155 ~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atlst  218 (333)
T KOG3007|consen  155 YIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLST  218 (333)
T ss_pred             HHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccccC
Confidence            99999999 5   99999999999999831             123789999999999998654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.27  E-value=1.7e-06  Score=68.94  Aligned_cols=67  Identities=18%  Similarity=0.187  Sum_probs=54.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCC--C-------cccccccCcEEEEecccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKG--M-------ATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g--~-------~~~~v~~advvv~~~~~~~~  218 (224)
                      ..++++|||+|..|+.-+.++...-.  +.|+||+.+++++|++...+  +       ..+.+.++||||++|...+.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            68999999999999999999988743  59999999999999985422  1       34556799999999998764

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.18  E-value=6.5e-06  Score=73.07  Aligned_cols=89  Identities=17%  Similarity=0.090  Sum_probs=68.9

Q ss_pred             ccchhhhhhhhhHHhhhh--hc-cCCCCCCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCC---C
Q psy13395        127 TEITKWRTAAASVVATKH--LF-GRSGDKDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKG---M  198 (224)
Q Consensus       127 ~~lT~~RTaA~Salaa~~--La-r~~~~~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g---~  198 (224)
                      +.+++.+|-+.+.+.+-.  +. ..   ..++++|+|+|.+|+..++++...-  .+.|+||+.+++++++++...   +
T Consensus        97 g~l~G~NTD~~G~~~~l~~~~~~~~---~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~  173 (278)
T PRK00258         97 GRLIGDNTDGIGFVRALEERLGVDL---KGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKA  173 (278)
T ss_pred             CEEEEEcccHHHHHHHHHhccCCCC---CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccce
Confidence            468889999999887742  32 23   5678999999999999999998654  249999999999999874321   1


Q ss_pred             -----cccccccCcEEEEecccccc
Q psy13395        199 -----ATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       199 -----~~~~v~~advvv~~~~~~~~  218 (224)
                           ..+.+.++||||.+|.....
T Consensus       174 ~~~~~~~~~~~~~DivInaTp~g~~  198 (278)
T PRK00258        174 ELDLELQEELADFDLIINATSAGMS  198 (278)
T ss_pred             eecccchhccccCCEEEECCcCCCC
Confidence                 13566789999999998753

>PLN00203 glutamyl-tRNA reductase

Probab=98.18  E-value=2.5e-06  Score=82.28  Aligned_cols=89  Identities=12%  Similarity=0.072  Sum_probs=65.2

Q ss_pred             hhhhhhhhhHHhh-hhhccCCCC----CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCCC----
Q psy13395        130 TKWRTAAASVVAT-KHLFGRSGD----KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKGM----  198 (224)
Q Consensus       130 T~~RTaA~Salaa-~~Lar~~~~----~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g~----  198 (224)
                      |++-++++|...+ -.|+.+...    ..++++|||+|.||+.+++.+...-.  +.||||++++++.|++...+.    
T Consensus       238 T~I~~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~  317 (519)
T PLN00203        238 TNIASGAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIY  317 (519)
T ss_pred             cCCCCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEe
Confidence            6666677776522 234432221    37899999999999999999886432  499999999999999753221    


Q ss_pred             -----cccccccCcEEEEecccccc
Q psy13395        199 -----ATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       199 -----~~~~v~~advvv~~~~~~~~  218 (224)
                           ..+.+.++||||++|.+.|.
T Consensus       318 ~~~~dl~~al~~aDVVIsAT~s~~p  342 (519)
T PLN00203        318 KPLDEMLACAAEADVVFTSTSSETP  342 (519)
T ss_pred             ecHhhHHHHHhcCCEEEEccCCCCC
Confidence                 34667899999999988763

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.07  E-value=7.1e-06  Score=77.02  Aligned_cols=68  Identities=21%  Similarity=0.218  Sum_probs=58.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCCC------cccccccCcEEEEeccccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKGM------ATEDVITAKLIYDKYQAQHSN  219 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g~------~~~~v~~advvv~~~~~~~~~  219 (224)
                      ..++++|||+|.++.--++++..--  .|.|.||+.++|+.||++..+-      ..+.+.++||||++|++.|..
T Consensus       177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~i  252 (414)
T COG0373         177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPI  252 (414)
T ss_pred             ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccc
Confidence            6889999999999999999988864  2599999999999999965432      577888999999999999864

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.96  E-value=1.8e-05  Score=74.24  Aligned_cols=67  Identities=18%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccC--CC----cccccccCcEEEEecccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKK--GM----ATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~--g~----~~~~v~~advvv~~~~~~~~  218 (224)
                      ...+++|||+|.+|+.+++.+...-  .+.+|+|+.++++.|+++..  .+    ..+.+.++||||++|++.+.
T Consensus       179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~  253 (417)
T TIGR01035       179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHP  253 (417)
T ss_pred             cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCc
Confidence            5789999999999999999998742  24999999999998987532  12    34667899999999987664

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.94  E-value=1.9e-05  Score=74.32  Aligned_cols=67  Identities=13%  Similarity=0.120  Sum_probs=55.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccC-C--C----cccccccCcEEEEecccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKK-G--M----ATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~-g--~----~~~~v~~advvv~~~~~~~~  218 (224)
                      ..++++|||+|.+|+.-++.+...-.  |.|+||+.++++.|++... +  .    ..+.+.++||||++|++.|.
T Consensus       180 ~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~  255 (414)
T PRK13940        180 SSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEY  255 (414)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCe
Confidence            56899999999999999999987542  5999999999999998642 2  1    25667899999999999875

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.92  E-value=2e-05  Score=71.09  Aligned_cols=67  Identities=19%  Similarity=0.199  Sum_probs=54.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCC--C----cccccccCcEEEEecccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKG--M----ATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g--~----~~~~v~~advvv~~~~~~~~  218 (224)
                      ...+++|||+|.+|+.+++.+....  .+.+++|++++++.|+++...  +    ..+.+.++||||++|++.+.
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~  251 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY  251 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch
Confidence            5789999999999999999988732  349999999999999886322  1    24567889999999998764

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.79  E-value=5.1e-05  Score=71.29  Aligned_cols=67  Identities=19%  Similarity=0.251  Sum_probs=53.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCC--C----cccccccCcEEEEecccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKG--M----ATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g--~----~~~~v~~advvv~~~~~~~~  218 (224)
                      ...+++|||+|.+|+..++.+...-  .+.+|+|++++++.|++...+  +    ..+.+.++||||++|++.|.
T Consensus       181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~  255 (423)
T PRK00045        181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHP  255 (423)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCc
Confidence            6789999999999999999987643  248999999999999875321  1    34567899999999998764

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.67  E-value=0.0001  Score=58.74  Aligned_cols=67  Identities=21%  Similarity=0.145  Sum_probs=53.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-C-cEEEeCCcchHHhhhhccCC------C--cccccccCcEEEEecccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-K-LKKYNRGLTEGTVTGSTKKG------M--ATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~-i~v~~R~~~~a~~~a~~~~g------~--~~~~v~~advvv~~~~~~~~  218 (224)
                      +.++++|||+|.+|+.+++.+.... . +.+|+|++++++++++....      .  ..+.+.++|+||.++....-
T Consensus        18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~   94 (155)
T cd01065          18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMK   94 (155)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCC
Confidence            5789999999999999999998863 3 49999999999888764211      1  23447899999999988653

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.59  E-value=0.00021  Score=63.09  Aligned_cols=86  Identities=19%  Similarity=0.207  Sum_probs=62.2

Q ss_pred             cchhhhhhhhhHHhh-hhh-ccCCCCCCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC--C-----
Q psy13395        128 EITKWRTAAASVVAT-KHL-FGRSGDKDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK--G-----  197 (224)
Q Consensus       128 ~lT~~RTaA~Salaa-~~L-ar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~--g-----  197 (224)
                      .+++..|-..+.+.+ +.. ...   +.++++|+|+|.+|+..+.++...- .+.+|+|+++++++++++..  +     
T Consensus        93 ~l~g~NTD~~G~~~~l~~~~~~~---~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~  169 (270)
T TIGR00507        93 KLVGYNTDGIGLVSDLERLIPLR---PNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAF  169 (270)
T ss_pred             EEEEEcCCHHHHHHHHHhcCCCc---cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEe
Confidence            566677777776655 221 223   5789999999999999999988643 24999999999999887421  2     


Q ss_pred             -CcccccccCcEEEEecccc
Q psy13395        198 -MATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       198 -~~~~~v~~advvv~~~~~~  216 (224)
                       .......++||||.+|...
T Consensus       170 ~~~~~~~~~~DivInatp~g  189 (270)
T TIGR00507       170 SMDELPLHRVDLIINATSAG  189 (270)
T ss_pred             chhhhcccCccEEEECCCCC
Confidence             1122335799999999875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.55  E-value=0.00014  Score=53.67  Aligned_cols=63  Identities=16%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC----CcE-EEeCCcchHHhhhhccC----C-CcccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL----KLK-KYNRGLTEGTVTGSTKK----G-MATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~----~i~-v~~R~~~~a~~~a~~~~----g-~~~~~v~~advvv~~~~~~~  217 (224)
                      +++|||+|.+|...++.+....    .+. +++|+++++++++++..    . -..+.+.++||||-+...|+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~   73 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQ   73 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGG
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHH
Confidence            5899999999999999998885    244 44999999999987542    1 25677778999999887765

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.52  E-value=0.00013  Score=63.67  Aligned_cols=63  Identities=11%  Similarity=0.075  Sum_probs=50.2

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-Cc---EEEeCCcchHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KL---KKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i---~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~  217 (224)
                      +++|||+|.+|...++.+.... ++   .+|+|++++++.|++...+.     ..+.+.++||||.++..|+
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~   73 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQI   73 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHH
Confidence            5899999999999999998753 22   79999999999988753222     3345679999999998754

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.50  E-value=0.00015  Score=59.24  Aligned_cols=62  Identities=11%  Similarity=0.186  Sum_probs=48.4

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~~  215 (224)
                      .++++||.|.+|....+.+... +++.+|||+++++++|.+..   .....+.+.++|+|++....
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~   67 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPD   67 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSS
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeeccc
Confidence            5799999999999999998764 45699999999999998742   24467778899999997654

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.38  E-value=0.0006  Score=56.92  Aligned_cols=66  Identities=14%  Similarity=0.139  Sum_probs=50.9

Q ss_pred             CCcEEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc---CCC------------cccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK---KGM------------ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~---~g~------------~~~~v~~advvv~~~~  214 (224)
                      ..++++|+|+ |.+|+..++.+...- .+.+++|+.++++.+++..   .+.            ..+.+.++||||++|.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~  106 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGA  106 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCC
Confidence            4578999985 999999999887643 2489999999998887632   111            1356789999999998


Q ss_pred             ccc
Q psy13395        215 AQH  217 (224)
Q Consensus       215 ~~~  217 (224)
                      +..
T Consensus       107 ~g~  109 (194)
T cd01078         107 AGV  109 (194)
T ss_pred             CCc
Confidence            766

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.24  E-value=0.00063  Score=60.82  Aligned_cols=65  Identities=9%  Similarity=0.044  Sum_probs=51.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccC---C-C-------cccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKK---G-M-------ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~---g-~-------~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|||+|..|++.+.++....  .|.|+||+.++++.|++...   . .       ..+.+.++||||.+|...
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G  203 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG  203 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence            5689999999999999999998754  25999999999999987421   1 1       133567899999998765

>PRK07680 late competence protein ComER; Validated

Probab=97.22  E-value=0.00044  Score=60.91  Aligned_cols=63  Identities=21%  Similarity=0.229  Sum_probs=49.9

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-----CcEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-----KLKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-----~i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~  217 (224)
                      +++|||+|.+|...++.+....     .+.+|+|++++++.++++..|+     ..+.+.++|+||.++..+.
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~   74 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLD   74 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHH
Confidence            5899999999999999988764     2499999999998887643343     2345779999999987654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.22  E-value=0.00067  Score=60.53  Aligned_cols=66  Identities=12%  Similarity=0.066  Sum_probs=51.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccC--C----Cc-----ccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKK--G----MA-----TEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~--g----~~-----~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||+|..|+.-+.++...-  .+.|+||++++++.|+++..  +    +.     .+.+.++||||.+|....
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~  202 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV  202 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence            4578999999999999999988754  25999999999999987421  1    11     134578999999998643

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.08  E-value=0.0014  Score=47.99  Aligned_cols=32  Identities=19%  Similarity=0.188  Sum_probs=28.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeC
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNR  183 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R  183 (224)
                      ..++++|+|+|.||+.+++++.....  +.+|+|
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            57899999999999999999999743  499998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.99  E-value=0.0013  Score=58.51  Aligned_cols=63  Identities=8%  Similarity=0.074  Sum_probs=49.6

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC---C--cEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL---K--LKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~---~--i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~  217 (224)
                      .++++||+|.+|..-++.+...-   +  +.+|+|++++++.+.++. |+     ..+.+.++||||.+...|+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~-g~~~~~~~~e~~~~aDiIiLavkP~~   75 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY-GITITTNNNEVANSADILILSIKPDL   75 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc-CcEEeCCcHHHHhhCCEEEEEeChHH
Confidence            47999999999999999998642   2  499999999988887632 32     3345679999999987664

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.96  E-value=0.0017  Score=58.27  Aligned_cols=64  Identities=20%  Similarity=0.160  Sum_probs=50.8

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccC--C-----C--c-ccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKK--G-----M--A-TEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~--g-----~--~-~~~v~~advvv~~~~~~  216 (224)
                      .++++|+|+|.-|++-+.++...-.  |.|+||+.+++++|++...  +     .  . .+...++||||.+|..-
T Consensus       126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         126 GKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG  201 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence            5889999999999999999999874  6999999999999998422  1     1  1 12222699999999753

>PLN02688 pyrroline-5-carboxylate reductase

Probab=96.93  E-value=0.0016  Score=56.72  Aligned_cols=61  Identities=23%  Similarity=0.229  Sum_probs=47.7

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-----CcEEE-eCCcchHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-----KLKKY-NRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-----~i~v~-~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~  217 (224)
                      ++++||+|.+|..-++.+....     .+.+| +|++++++.+.+.  |+     ..+.+.++||||.++..++
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~--g~~~~~~~~e~~~~aDvVil~v~~~~   73 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL--GVKTAASNTEVVKSSDVIILAVKPQV   73 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc--CCEEeCChHHHHhcCCEEEEEECcHH
Confidence            5899999999999999998753     24777 9999998887652  43     3455679999999986553

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.92  E-value=0.00072  Score=53.83  Aligned_cols=65  Identities=17%  Similarity=0.192  Sum_probs=46.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-Cc-EEEeCCcchHHhhhhccCCC----cccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KL-KKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i-~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~  216 (224)
                      ...+++|||+|..|....+++...- +| -||+|+.++++.++....+.    ..+.+..||||+-++...
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd   79 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD   79 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH
Confidence            5679999999999999999998864 45 99999999998888753322    456788999999887643

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.88  E-value=0.002  Score=57.19  Aligned_cols=64  Identities=19%  Similarity=0.087  Sum_probs=48.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CC--c-EEEeCCcchHHhhhhccCC---C--cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LK--L-KKYNRGLTEGTVTGSTKKG---M--ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~--i-~v~~R~~~~a~~~a~~~~g---~--~~~~v~~advvv~~~~~  215 (224)
                      ...+++|||+|.+|+.|++.+... ..  + .||+|++++++++++....   +  ..+-+.+.|+||.++..
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~   77 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPA   77 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCc
Confidence            467899999999999999999874 33  3 7999999999998875321   1  23334578999988764

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.86  E-value=0.0024  Score=48.53  Aligned_cols=61  Identities=13%  Similarity=0.141  Sum_probs=47.8

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC---c-EEEeCCcchHHhhhhccCCC-----cccccc--cCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK---L-KKYNRGLTEGTVTGSTKKGM-----ATEDVI--TAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~g~-----~~~~v~--~advvv~~~~~~  216 (224)
                      +++|||+|..++.|++++....+   + -+|++++++++.|+++. |+     ..+-+.  +.|+|+-+|...
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~D~V~I~tp~~   73 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-GIPVYTDLEELLADEDVDAVIIATPPS   73 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-TSEEESSHHHHHHHTTESEEEEESSGG
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-cccchhHHHHHHHhhcCCEEEEecCCc
Confidence            68999999999999999999865   2 89999999999997642 22     223333  689999888653

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.85  E-value=0.0021  Score=57.53  Aligned_cols=63  Identities=10%  Similarity=0.080  Sum_probs=50.3

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~~~  216 (224)
                      .+++|||+|.+|....+.+...- ++.+|||++++.+.|.+..   .....+.+.++|+||.+...+
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~   68 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNG   68 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCH
Confidence            36999999999999999987653 4699999999999987642   122456778999999987664

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.73  E-value=0.0023  Score=57.57  Aligned_cols=60  Identities=15%  Similarity=0.148  Sum_probs=47.2

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC----CCcccccccCcEEEEecc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK----GMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~----g~~~~~v~~advvv~~~~  214 (224)
                      ++++||.|.++.-...-+...- ++.+|||+++++..+.....    ..+.+++.++||||+-..
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLP   66 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecC
Confidence            6899999999999888877754 35999999999655554322    236789999999998653

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.70  E-value=0.0029  Score=55.18  Aligned_cols=63  Identities=14%  Similarity=0.106  Sum_probs=49.0

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC----CcEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL----KLKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~----~i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~  217 (224)
                      .+++|||+|.+|...++.+....    .+.+|+|++++++.+.+.. |+     ..+.+.++|+||-++..++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~-g~~~~~~~~~~~~~advVil~v~~~~   74 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY-GVRAATDNQEAAQEADVVVLAVKPQV   74 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc-CCeecCChHHHHhcCCEEEEEcCHHH
Confidence            46999999999999999988753    2489999999988887642 22     3445679999999886653

>KOG0409|consensus

Probab=96.65  E-value=0.0024  Score=57.85  Aligned_cols=63  Identities=10%  Similarity=0.110  Sum_probs=52.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~  214 (224)
                      ...+++.||.|.++......+... +++.||||+.++.+.|.+..   ...+.|-+.++|+|||-..
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~  100 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVP  100 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcC
Confidence            478999999999999999887776 45699999999999999842   2446777779999998654

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.61  E-value=0.0032  Score=51.18  Aligned_cols=63  Identities=17%  Similarity=0.213  Sum_probs=47.1

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccC------CC-----------cccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKK------GM-----------ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~------g~-----------~~~~v~~advvv~~~~~~  216 (224)
                      +++|||+|..|.+....+..-.. +.+|.|+++..+.+.+.+.      ++           ..+++.+||+||-++-+|
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            58999999999988877766553 4999999999888876322      11           367889999999998876


Q ss_pred             c
Q psy13395        217 H  217 (224)
Q Consensus       217 ~  217 (224)
                      .
T Consensus        81 ~   81 (157)
T PF01210_consen   81 A   81 (157)
T ss_dssp             G
T ss_pred             H
Confidence            4

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.61  E-value=0.0039  Score=55.12  Aligned_cols=64  Identities=13%  Similarity=0.128  Sum_probs=48.8

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-----CcEEEeCCcc-hHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-----KLKKYNRGLT-EGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-----~i~v~~R~~~-~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++||+|.+|..-++.+..-.     .+.+|+|+++ +++.|+... |+     ..+.+.++||||.+...|+
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~-g~~~~~~~~e~~~~aDvVilav~p~~   77 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY-GVKGTHNKKELLTDANILFLAMKPKD   77 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc-CceEeCCHHHHHhcCCEEEEEeCHHH
Confidence            458999999999999999998752     2499999874 567776532 22     3455679999999988765

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.57  E-value=0.0054  Score=54.70  Aligned_cols=65  Identities=25%  Similarity=0.263  Sum_probs=49.9

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCCCc-cccc--ccCcEEEEecccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKGMA-TEDV--ITAKLIYDKYQAQHS  218 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g~~-~~~v--~~advvv~~~~~~~~  218 (224)
                      .++++|+|+|.-|++-+.++...-  .+.|+||++++++.+++.. +.. .+.+  ..+||||.+|.....
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~-~~~~~~~~~~~~~dlvINaTp~Gm~  191 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY-GYEWRPDLGGIEADILVNVTPIGMA  191 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh-CCcchhhcccccCCEEEECCccccC
Confidence            358999999999999999988654  2599999999999998753 221 1122  468999999986543

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.56  E-value=0.0044  Score=55.50  Aligned_cols=65  Identities=17%  Similarity=0.024  Sum_probs=49.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhccC-----CCcccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTKK-----GMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~~~-----g~~~~~v~~advvv~~~~~~  216 (224)
                      ...+++|||+|.+|....+++....   .+.+|+|++++.+.+.+...     .-..+.+.++||||.++..+
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~   77 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG   77 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH
Confidence            3568999999999999999998764   24999999988776654211     11345678999999999764

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.53  E-value=0.0038  Score=55.33  Aligned_cols=60  Identities=12%  Similarity=0.073  Sum_probs=47.2

Q ss_pred             EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC---CCcccccccCcEEEEecc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~~  214 (224)
                      +++|||+|.+|....+.+... +++.+|+|++++++.|.+...   .-..+.+.++|+||.+..
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp   64 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVP   64 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecC
Confidence            489999999999999988765 345999999999988876321   124567789999999865

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.49  E-value=0.0082  Score=49.88  Aligned_cols=55  Identities=7%  Similarity=-0.002  Sum_probs=43.1

Q ss_pred             CCcEEEEEecCHh-HHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQ-AYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~Q-A~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      +.++++|||+|.+ +...++.+.... .+.+.+|+.+.           ..+.+.+|||||++|++.|
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~-----------l~~~l~~aDiVIsat~~~~   99 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKN-----------LKEHTKQADIVIVAVGKPG   99 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchh-----------HHHHHhhCCEEEEcCCCCc
Confidence            6799999999986 777888877643 24888887532           3457889999999999977

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.49  E-value=0.0061  Score=54.72  Aligned_cols=66  Identities=12%  Similarity=0.169  Sum_probs=47.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCc---chHHhhhhccC---C--C----c------ccccccCcEEEE
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGL---TEGTVTGSTKK---G--M----A------TEDVITAKLIYD  211 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~---~~a~~~a~~~~---g--~----~------~~~v~~advvv~  211 (224)
                      ..++++|||+|..|++-+.++...-  .|.|+||++   +++++|+++..   +  +    .      .+++.++||||.
T Consensus       123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivIN  202 (288)
T PRK12749        123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTN  202 (288)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEE
Confidence            4578999999999998766665432  249999995   58898887321   1  1    1      124568999999


Q ss_pred             eccccc
Q psy13395        212 KYQAQH  217 (224)
Q Consensus       212 ~~~~~~  217 (224)
                      +|....
T Consensus       203 aTp~Gm  208 (288)
T PRK12749        203 GTKVGM  208 (288)
T ss_pred             CCCCCC
Confidence            997643

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.47  E-value=0.0048  Score=54.49  Aligned_cols=62  Identities=26%  Similarity=0.294  Sum_probs=46.6

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-C--c-EEEeCCcchHHhhhhccCC--C--cccccccCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-K--L-KKYNRGLTEGTVTGSTKKG--M--ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~--i-~v~~R~~~~a~~~a~~~~g--~--~~~~v~~advvv~~~~~  215 (224)
                      .+++|||+|.+|..|++++.... .  + .+|+|++++++.|++....  +  ..+-+.+.|+||.++..
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~   71 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV   71 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh
Confidence            36999999999999999988753 3  3 8999999999999874211  1  22223689999987653

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.46  E-value=0.0052  Score=54.46  Aligned_cols=61  Identities=13%  Similarity=0.095  Sum_probs=47.5

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC---CCcccccccCcEEEEecc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~~  214 (224)
                      .+++|||+|.+|..+.+.+...- ++.+|+|++++.+.+.+...   ....+.+.++|+||.+..
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp   67 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLP   67 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCC
Confidence            46999999999999999987642 35999999999888775321   113456689999999875

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=96.46  E-value=0.0061  Score=56.13  Aligned_cols=64  Identities=9%  Similarity=-0.066  Sum_probs=45.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhcc-CCCcccccccCcEEEEe---cccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTK-KGMATEDVITAKLIYDK---YQAQHS  218 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~-~g~~~~~v~~advvv~~---~~~~~~  218 (224)
                      ..++++|||+|.+|+.-++.+...-.  +.|.||+.+. ..|.+.. +.+  +-..++||||++   |.++|.
T Consensus       173 ~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-~~~~~~~~~~~--~~~~~~DvVIs~t~~Tas~~p  242 (338)
T PRK00676        173 KKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-LPYRTVVREEL--SFQDPYDVIFFGSSESAYAFP  242 (338)
T ss_pred             cCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-cchhhhhhhhh--hcccCCCEEEEcCCcCCCCCc
Confidence            68999999999999999999988542  4999999863 3333210 110  113588999997   666663

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.43  E-value=0.0059  Score=52.42  Aligned_cols=64  Identities=11%  Similarity=0.044  Sum_probs=47.9

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC--C---cEEEeC-CcchHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL--K---LKKYNR-GLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~--~---i~v~~R-~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~  217 (224)
                      ..+++|||+|.+|..+++.+....  +   +.+|+| ++++++.++++. ++     ..+.+.++|+||.++..++
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~DiViiavp~~~   78 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-NVSTTTDWKQHVTSVDTIVLAMPPSA   78 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-CcEEeCChHHHHhcCCEEEEecCHHH
Confidence            467999999999999999997653  2   256787 467888877642 22     3445678999999987763

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.38  E-value=0.0056  Score=52.27  Aligned_cols=63  Identities=19%  Similarity=0.187  Sum_probs=48.7

Q ss_pred             EEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc------CCC--------cccccccCcEEEEeccccc
Q psy13395        155 VLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK------KGM--------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~------~g~--------~~~~v~~advvv~~~~~~~  217 (224)
                      +++||| +|.+|....+.+...- .+.+|+|++++++.+++..      .|+        ..+++.++|+||.++..++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~   80 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH   80 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence            589997 9999999999988763 4689999999988876521      121        3456789999999987653

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.33  E-value=0.0072  Score=54.52  Aligned_cols=66  Identities=14%  Similarity=0.215  Sum_probs=50.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC------C------C-----cccccccCcEEEEec
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK------G------M-----ATEDVITAKLIYDKY  213 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~------g------~-----~~~~v~~advvv~~~  213 (224)
                      +..+++|||+|.+|..-...+... +++.+|+|++++++.+.+...      |      +     ..+++.++|+||.++
T Consensus         3 ~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v   82 (328)
T PRK14618          3 HGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAV   82 (328)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEEC
Confidence            456899999999999999988765 346999999999888875311      2      1     234567899999998


Q ss_pred             cccc
Q psy13395        214 QAQH  217 (224)
Q Consensus       214 ~~~~  217 (224)
                      -.+.
T Consensus        83 ~~~~   86 (328)
T PRK14618         83 PSKA   86 (328)
T ss_pred             chHH
Confidence            7653

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.32  E-value=0.0069  Score=54.28  Aligned_cols=66  Identities=14%  Similarity=0.072  Sum_probs=50.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhcc---CC------Cc----ccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTK---KG------MA----TEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~---~g------~~----~~~v~~advvv~~~~~~  216 (224)
                      +.++++|+|+|.-|++-+.++...-  .|.|+||+.+++++++++.   .+      ..    .+.+..+||||.+|...
T Consensus       126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~G  205 (283)
T PRK14027        126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG  205 (283)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCC
Confidence            4678999999999999999988643  2499999999999998742   11      11    12345789999999765


Q ss_pred             c
Q psy13395        217 H  217 (224)
Q Consensus       217 ~  217 (224)
                      .
T Consensus       206 m  206 (283)
T PRK14027        206 M  206 (283)
T ss_pred             C
Confidence            3

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.31  E-value=0.0087  Score=49.67  Aligned_cols=64  Identities=11%  Similarity=0.059  Sum_probs=44.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      .-++++|+|.|..++-..+.+...--. .|+..+|-++  +....+|+    ..+++.++|||||+|+..+
T Consensus        22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~a--lqA~~dGf~v~~~~~a~~~adi~vtaTG~~~   90 (162)
T PF00670_consen   22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRA--LQAAMDGFEVMTLEEALRDADIFVTATGNKD   90 (162)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHH--HHHHHTT-EEE-HHHHTTT-SEEEE-SSSSS
T ss_pred             CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHH--HHhhhcCcEecCHHHHHhhCCEEEECCCCcc
Confidence            467899999999999999999887654 9999988654  22233444    5788899999999999754

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.31  E-value=0.014  Score=53.89  Aligned_cols=90  Identities=13%  Similarity=0.045  Sum_probs=62.1

Q ss_pred             eCccchhhhhhhhhHHhhhhhcc-CCCCCCcEEEEEec-CHhHHHHHHHHHHh---CCcEEEeCCcchHHhhhhccC-CC
Q psy13395        125 EGTEITKWRTAAASVVATKHLFG-RSGDKDLVLAIMGS-GAQAYIHAKAFHAS---LKLKKYNRGLTEGTVTGSTKK-GM  198 (224)
Q Consensus       125 Dg~~lT~~RTaA~Salaa~~Lar-~~~~~~~~l~iiGa-G~QA~~hl~a~~~v---~~i~v~~R~~~~a~~~a~~~~-g~  198 (224)
                      -||..|+.=....--++.+.+.. -   ..++++|+|+ |.+|...++.+..-   ..+.+++|++++++.++++.. +-
T Consensus       129 tGNs~T~~ll~~~V~la~~~lg~~l---~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~  205 (340)
T PRK14982        129 TGNTHTAYVICRQVEQNAPRLGIDL---SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGK  205 (340)
T ss_pred             CCchhHHHHHHHHHHHhHHHhccCc---CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcccc
Confidence            46666644333222233344432 2   5689999998 89999999999753   334899999999988887432 11


Q ss_pred             ---cccccccCcEEEEeccccc
Q psy13395        199 ---ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       199 ---~~~~v~~advvv~~~~~~~  217 (224)
                         ..+.+.++|+||++|++.+
T Consensus       206 i~~l~~~l~~aDiVv~~ts~~~  227 (340)
T PRK14982        206 ILSLEEALPEADIVVWVASMPK  227 (340)
T ss_pred             HHhHHHHHccCCEEEECCcCCc
Confidence               3467889999999998754

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.97  E-value=0.015  Score=52.05  Aligned_cols=62  Identities=18%  Similarity=0.176  Sum_probs=45.9

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCC-C-cccc-ccc---CcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKG-M-ATED-VIT---AKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g-~-~~~~-v~~---advvv~~~~~~  216 (224)
                      ++++||.|.+|....+.+...- ++.+|||++++++++.+...- . ..++ +.+   +|+|+..+..+
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~   70 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAG   70 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCc
Confidence            5899999999999999987753 359999999999888653110 1 2333 333   69999988765

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=95.96  E-value=0.016  Score=51.84  Aligned_cols=62  Identities=8%  Similarity=0.158  Sum_probs=46.4

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC-CC-c----ccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK-GM-A----TEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~-g~-~----~~~v~~advvv~~~~~~  216 (224)
                      +++|||+|.+|....+.+..-- ++.+|+|+++++++|.+... .. .    .+.+.++|+|+.....+
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~   70 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG   70 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch
Confidence            6899999999999999887653 35999999999999987321 11 1    22345689999887654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.87  E-value=0.015  Score=43.96  Aligned_cols=65  Identities=14%  Similarity=0.149  Sum_probs=45.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhh-ccCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGS-TKKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~-~~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|..|..-++.+...-. ++|++++.+..+.... ....+. +++.++|+||.+|....
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~-~~l~~~~lV~~at~d~~   72 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFE-EDLDGADLVFAATDDPE   72 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-G-GGCTTESEEEE-SS-HH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHH-HHHhhheEEEecCCCHH
Confidence            57899999999999999988887654 4999999732232222 233554 88999999999997643

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.85  E-value=0.014  Score=52.43  Aligned_cols=63  Identities=13%  Similarity=0.009  Sum_probs=49.5

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhcc--------CC-----CcccccccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTK--------KG-----MATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~~--------~g-----~~~~~v~~advvv~~~~~~  216 (224)
                      ++++|||+|..|..-+.++...-   .+.+++|++++++.++...        ..     ...+++.+|||||.+++..
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence            36899999999999999877643   2499999999988777631        11     1457789999999999874

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=95.78  E-value=0.019  Score=51.25  Aligned_cols=64  Identities=14%  Similarity=0.145  Sum_probs=51.8

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCC-----cEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLK-----LKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~-----i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      .++++||+|.+|...+..+..-..     |.+-+|+.+++++|+++....    ..+.+.++|+||-+...|+
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~   74 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQD   74 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHh
Confidence            479999999999999999998872     388899999999888764221    3567778999999887664

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.76  E-value=0.014  Score=56.28  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=46.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc-c-CC------C-cccccc----cCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST-K-KG------M-ATEDVI----TAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~-~-~g------~-~~~~v~----~advvv~~~~  214 (224)
                      +-.++++||.|.+|....+-+..- +++.||||++++++.|.+. . .|      . ..+++.    ++|+|++.-.
T Consensus         5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~   81 (493)
T PLN02350          5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK   81 (493)
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence            556799999999999999988764 3459999999999999873 1 12      1 223333    3999998654

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=95.70  E-value=0.017  Score=50.61  Aligned_cols=62  Identities=15%  Similarity=0.190  Sum_probs=45.5

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC---Cc-EEEeCCcchHHhhhhccCC---C-cccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL---KL-KKYNRGLTEGTVTGSTKKG---M-ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~---~i-~v~~R~~~~a~~~a~~~~g---~-~~~~v~~advvv~~~~~~  216 (224)
                      +++|||||.+|...++.+..-+   .+ .+|+|+.++++.+.....+   . ..+.+...|+||.+-+.|
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~   71 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPE   71 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHH
Confidence            6899999999999999988663   23 9999999999988763222   1 233446777777665543

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.69  E-value=0.021  Score=50.67  Aligned_cols=63  Identities=10%  Similarity=0.021  Sum_probs=45.3

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-----CcEEEeCCc-chHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-----KLKKYNRGL-TEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-----~i~v~~R~~-~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~  217 (224)
                      +++|||+|.+|...++.+....     .+.+|+|+. ++.+.+.+...+.     ..+.+.++|+||.++..|+
T Consensus         3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~   76 (277)
T PRK06928          3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLA   76 (277)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHH
Confidence            6999999999999999988764     248899865 4455554432121     2345679999999987764

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.65  E-value=0.033  Score=48.22  Aligned_cols=63  Identities=13%  Similarity=0.122  Sum_probs=46.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC----CcEEEeCC----cchH-------Hhhhhcc--CCC---cccccccCcEEEE
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL----KLKKYNRG----LTEG-------TVTGSTK--KGM---ATEDVITAKLIYD  211 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~----~i~v~~R~----~~~a-------~~~a~~~--~g~---~~~~v~~advvv~  211 (224)
                      ...+++|+|+|..|+.-++.+...-    .+.++||+    .+++       +.|++..  .+.   ..+++.++||||.
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIg  103 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIG  103 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEe
Confidence            4679999999999999999887752    35788999    5554       4555532  121   3477889999999


Q ss_pred             ecc
Q psy13395        212 KYQ  214 (224)
Q Consensus       212 ~~~  214 (224)
                      +|.
T Consensus       104 aT~  106 (226)
T cd05311         104 VSR  106 (226)
T ss_pred             CCC
Confidence            996

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=95.64  E-value=0.024  Score=47.14  Aligned_cols=61  Identities=21%  Similarity=0.208  Sum_probs=39.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCC----cccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.|++.|..-|..- .+  .|-.|...+-.+.|+. .|+    ..|++..||||+-.+-
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDS-G~~V~Vglr~~s~s~~~A~~-~Gf~v~~~~eAv~~aDvV~~L~P   69 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDS-GVNVIVGLREGSASWEKAKA-DGFEVMSVAEAVKKADVVMLLLP   69 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHC-C-EEEEEE-TTCHHHHHHHH-TT-ECCEHHHHHHC-SEEEE-S-
T ss_pred             CCCEEEEECCChHHHHHHHHHHhC-CCCEEEEecCCCcCHHHHHH-CCCeeccHHHHHhhCCEEEEeCC
Confidence            367999999999999999987663 34  6666666543333332 344    6888999999987663

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=95.62  E-value=0.031  Score=50.14  Aligned_cols=62  Identities=18%  Similarity=0.223  Sum_probs=50.0

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhhhhccCCC--------cccccccCcEEEEecc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVTGSTKKGM--------ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~a~~~~g~--------~~~~v~~advvv~~~~  214 (224)
                      ..+++|+|.|.+|.+-.+.+...-.. .||+++...++.......|+        ..+++.+||+||-++-
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavP   73 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVP   73 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEecc
Confidence            56899999999999999999987765 89999998776655544444        2577778999998874

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=95.55  E-value=0.014  Score=51.83  Aligned_cols=58  Identities=10%  Similarity=-0.000  Sum_probs=46.3

Q ss_pred             EEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC---CCcccccccCcEEEEeccc
Q psy13395        158 IMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       158 iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~~~  215 (224)
                      |||+|.+|....+.+...- ++.+|+|++++.+.+.+...   ....+.+.++|+||.+...
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~   62 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPA   62 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCC
Confidence            5899999999999988753 46999999999998876321   2245677899999998875

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.52  E-value=0.023  Score=53.52  Aligned_cols=64  Identities=8%  Similarity=-0.036  Sum_probs=48.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||+|.+|+..++.+..... +.+|++++.++.....  .|.    ..+++.++||||++|+..+
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~--~G~~v~~leeal~~aDVVItaTG~~~  262 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM--DGFRVMTMEEAAKIGDIFITATGNKD  262 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh--cCCEeCCHHHHHhcCCEEEECCCCHH
Confidence            46799999999999999998876533 4889999876533222  232    3567789999999998654

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=95.49  E-value=0.026  Score=50.19  Aligned_cols=63  Identities=16%  Similarity=0.230  Sum_probs=48.5

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc------------CCC-----cccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK------------KGM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~------------~g~-----~~~~v~~advvv~~~~~~  216 (224)
                      +++|||+|.+|......+...- ++.+|+|++++.+.+.+..            .+.     ..+.+.++|+||.++..+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~   82 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQ   82 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCHH
Confidence            6899999999999999988763 3599999999988887631            022     223556999999998765


Q ss_pred             c
Q psy13395        217 H  217 (224)
Q Consensus       217 ~  217 (224)
                      +
T Consensus        83 ~   83 (325)
T PRK00094         83 A   83 (325)
T ss_pred             H
Confidence            3

>PRK08507 prephenate dehydrogenase; Validated

Probab=95.45  E-value=0.031  Score=49.19  Aligned_cols=62  Identities=13%  Similarity=0.075  Sum_probs=45.2

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhccC---CCcccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~~~~  216 (224)
                      +++|||+|.+|.+..+.+...-   .+.+|+|++++.+.+.+...   ....+++.++|+||.++..+
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aD~Vilavp~~   69 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELKKCDVIFLAIPVD   69 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHhcCCEEEEeCcHH
Confidence            6899999999999999988653   24778999988776644211   11334456799999988654

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.43  E-value=0.045  Score=46.57  Aligned_cols=66  Identities=18%  Similarity=0.132  Sum_probs=49.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcch-HHhhhhc------cCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTE-GTVTGST------KKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~-a~~~a~~------~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|.+|..-++.+...-. +.|++++... .+.+++.      ...+..+++.++|+||.+|....
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e   82 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR   82 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence            57899999999999999998887543 5888887643 3455442      12345778999999999997654

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=95.41  E-value=0.031  Score=50.06  Aligned_cols=60  Identities=15%  Similarity=0.059  Sum_probs=44.4

Q ss_pred             EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~~  215 (224)
                      ++++||+|.+|....+.+... +++.+|+|+++ +++|.+..   .....+.+.++|+||.....
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~   65 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPD   65 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCC
Confidence            589999999999999988765 34589999974 67775421   12245556799999988653

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=95.40  E-value=0.033  Score=51.14  Aligned_cols=63  Identities=22%  Similarity=0.155  Sum_probs=45.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||+|.||..+++.+...- ++.+++|..++....+.. .|+    ..+++.+||||+.+.-.
T Consensus        16 ~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~-~G~~~~s~~eaa~~ADVVvLaVPd   83 (330)
T PRK05479         16 KGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA-DGFEVLTVAEAAKWADVIMILLPD   83 (330)
T ss_pred             CCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH-CCCeeCCHHHHHhcCCEEEEcCCH
Confidence            4678999999999999999987542 236777776655555442 233    45677899999998764

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.34  E-value=0.03  Score=52.88  Aligned_cols=64  Identities=11%  Similarity=0.046  Sum_probs=48.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      .-++++|+|+|.+|+..++.+...-. +.++++++.+++....  .|.    ..+.+..+||||++|+.++
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~--~G~~~~~~~e~v~~aDVVI~atG~~~  269 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM--EGYEVMTMEEAVKEGDIFVTTTGNKD  269 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh--cCCEEccHHHHHcCCCEEEECCCCHH
Confidence            46899999999999999998765432 4888999877643332  232    3466779999999998765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.32  E-value=0.039  Score=48.97  Aligned_cols=62  Identities=15%  Similarity=0.110  Sum_probs=46.1

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc---------cCC-------------C----ccccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST---------KKG-------------M----ATEDVIT  205 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~---------~~g-------------~----~~~~v~~  205 (224)
                      .++++|||+|.+|..-...+...- ++.+|+|+++..+.+.++         ..|             +    ..+++.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   83 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLAD   83 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhcC
Confidence            568999999999999888887653 459999999887664321         012             1    3366789


Q ss_pred             CcEEEEecc
Q psy13395        206 AKLIYDKYQ  214 (224)
Q Consensus       206 advvv~~~~  214 (224)
                      +|+||.+.-
T Consensus        84 aD~Vieavp   92 (292)
T PRK07530         84 CDLVIEAAT   92 (292)
T ss_pred             CCEEEEcCc
Confidence            999999974

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.31  E-value=0.045  Score=48.42  Aligned_cols=62  Identities=8%  Similarity=-0.061  Sum_probs=47.0

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC---C-CcccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK---G-MATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~---g-~~~~~v~~advvv~~~~~~  216 (224)
                      +++|||+|.+|..-.+++...- .+.+|+|+++..+.+.+...   . ...+.+.++|+||.++..+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~   68 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG   68 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH
Confidence            6899999999999999987652 35999999988777655311   1 1335678999999998644

>PRK06545 prephenate dehydrogenase; Validated

Probab=95.30  E-value=0.042  Score=50.52  Aligned_cols=63  Identities=16%  Similarity=0.061  Sum_probs=46.3

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC-------cccccccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM-------ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~-------~~~~v~~advvv~~~~~~  216 (224)
                      ++++|||+|.+|.+-.+++...- ++.+|+++++..+.......|+       ..+.+.++|+||-++-.+
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~   71 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD   71 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH
Confidence            36999999999999999998764 3589999887654433322232       234578999999987654

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.30  E-value=0.044  Score=48.93  Aligned_cols=65  Identities=17%  Similarity=0.083  Sum_probs=47.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc---cCC--------------C-----cccccccCcE
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST---KKG--------------M-----ATEDVITAKL  208 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~---~~g--------------~-----~~~~v~~adv  208 (224)
                      ..++++|||+|.+|......+...- ++.+|++++++.+++.+.   ..|              +     ..+++.++|+
T Consensus         3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl   82 (311)
T PRK06130          3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL   82 (311)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence            3578999999999999999887642 359999999887766541   001              1     2245789999


Q ss_pred             EEEecccc
Q psy13395        209 IYDKYQAQ  216 (224)
Q Consensus       209 vv~~~~~~  216 (224)
                      ||.+...+
T Consensus        83 Vi~av~~~   90 (311)
T PRK06130         83 VIEAVPEK   90 (311)
T ss_pred             EEEeccCc
Confidence            99998543

>PLN02858 fructose-bisphosphate aldolase

Probab=95.24  E-value=0.027  Score=60.45  Aligned_cols=63  Identities=11%  Similarity=0.041  Sum_probs=50.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~  214 (224)
                      .+.++++||.|.+|....+.+... +++.+|||+++++++|++..   ...+.+.+.++|+||+...
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~   69 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLS   69 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcC
Confidence            477899999999999888887764 34599999999999998742   2335677778999998754

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.21  E-value=0.052  Score=44.42  Aligned_cols=64  Identities=20%  Similarity=0.291  Sum_probs=47.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhc------cCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGST------KKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~------~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      +.++++|||.|.+|..-++.|...-. +.|++++  ..+.+.+.      ..-+..+++.++|+||.+|....
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e   82 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA   82 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH
Confidence            67899999999999999999887543 4788644  44444331      12346788999999999997654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.18  E-value=0.042  Score=49.30  Aligned_cols=64  Identities=14%  Similarity=0.125  Sum_probs=47.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc-CCC----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK-KGM----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~-~g~----~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||+|..|+..++.+...- .+.+|+|++++.+.+.+.. ..+    ..+.+.++||||.++..
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~  219 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPA  219 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCCh
Confidence            4689999999999999999987643 2599999998765554311 111    24567899999998743

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.17  E-value=0.036  Score=49.52  Aligned_cols=60  Identities=15%  Similarity=0.241  Sum_probs=44.9

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccc----cCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVI----TAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~----~advvv~~~~~~  216 (224)
                      +|+|||+|.+|....+.+...- ++.+|||++++.++|.+.  |.    ..+++.    ++|+|++.....
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~--g~~~~~~~~e~~~~~~~~dvvi~~v~~~   70 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEE--GATGADSLEELVAKLPAPRVVWLMVPAG   70 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC--CCeecCCHHHHHhhcCCCCEEEEEecCC
Confidence            6999999999999999987653 359999999999998763  22    233333    358988876543

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.16  E-value=0.037  Score=52.50  Aligned_cols=64  Identities=9%  Similarity=0.015  Sum_probs=48.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|+|+|.+|+..++.+...-. +.++++++.++...+..  |.    ..+.+.++||||++|+..+
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~--G~~v~~l~eal~~aDVVI~aTG~~~  279 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD--GFRVMTMEEAAELGDIFVTATGNKD  279 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc--CCEecCHHHHHhCCCEEEECCCCHH
Confidence            46799999999999999988876543 48899998876433322  32    3566779999999997654

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.12  E-value=0.043  Score=48.76  Aligned_cols=63  Identities=13%  Similarity=0.047  Sum_probs=46.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHh-----------hhhc----------cCC-----Ccccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTV-----------TGST----------KKG-----MATEDVI  204 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~-----------~a~~----------~~g-----~~~~~v~  204 (224)
                      +-++++|||+|.+|..-++.++..- ++.+|++++++.+.           +.+.          ..+     -..+++.
T Consensus         3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (295)
T PLN02545          3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR   82 (295)
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence            3568999999999999999987653 45999999988653           3221          011     1346788


Q ss_pred             cCcEEEEecc
Q psy13395        205 TAKLIYDKYQ  214 (224)
Q Consensus       205 ~advvv~~~~  214 (224)
                      ++|+||.+.-
T Consensus        83 ~aD~Vieav~   92 (295)
T PLN02545         83 DADFIIEAIV   92 (295)
T ss_pred             CCCEEEEcCc
Confidence            9999999865

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.08  E-value=0.051  Score=48.16  Aligned_cols=62  Identities=16%  Similarity=0.184  Sum_probs=45.7

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---------cCC-------------C-----ccccccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---------KKG-------------M-----ATEDVIT  205 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---------~~g-------------~-----~~~~v~~  205 (224)
                      ++++|||+|.+|..-...+... +++.+|+++++..+.+.+.         ..|             +     ..+++.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            5799999999999988877654 3469999999988775431         001             1     2367889


Q ss_pred             CcEEEEeccc
Q psy13395        206 AKLIYDKYQA  215 (224)
Q Consensus       206 advvv~~~~~  215 (224)
                      +|+||.+...
T Consensus        82 aD~Vi~avpe   91 (288)
T PRK09260         82 ADLVIEAVPE   91 (288)
T ss_pred             CCEEEEeccC
Confidence            9999987643

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.02  E-value=0.043  Score=50.89  Aligned_cols=62  Identities=15%  Similarity=0.087  Sum_probs=47.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCC-----C-----cccccccCcEEEEec
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKG-----M-----ATEDVITAKLIYDKY  213 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g-----~-----~~~~v~~advvv~~~  213 (224)
                      ...+++|||+|..|+.-++.+...-- +.+|+|++++++.+.+....     .     ..+.+.++||||+++
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~  238 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAV  238 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEcc
Confidence            35679999999999999999876532 49999999888776653211     1     245677999999987

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=94.95  E-value=0.046  Score=50.38  Aligned_cols=60  Identities=13%  Similarity=0.176  Sum_probs=44.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-Cc---EEEeCCcchHHhhhhccCCC----ccccc---ccCcEEEEec
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KL---KKYNRGLTEGTVTGSTKKGM----ATEDV---ITAKLIYDKY  213 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i---~v~~R~~~~a~~~a~~~~g~----~~~~v---~~advvv~~~  213 (224)
                      +..+++|||+| .|+.|++++...- .+   -|++|+++++++|+++. |+    ..+++   .++|+|++.|
T Consensus         2 ~~~rVgViG~~-~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~-gi~~y~~~eell~d~Di~~V~ipt   72 (343)
T TIGR01761         2 DVQSVVVCGTR-FGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL-GVPLYCEVEELPDDIDIACVVVRS   72 (343)
T ss_pred             CCcEEEEEeHH-HHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh-CCCccCCHHHHhcCCCEEEEEeCC
Confidence            56899999995 5999999998865 33   89999999999999853 22    22222   3566666644

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.93  E-value=0.045  Score=43.91  Aligned_cols=61  Identities=13%  Similarity=0.016  Sum_probs=47.5

Q ss_pred             EEEEEec-CHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhcc------CC-------CcccccccCcEEEEecccc
Q psy13395        155 VLAIMGS-GAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGSTK------KG-------MATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGa-G~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~~------~g-------~~~~~v~~advvv~~~~~~  216 (224)
                      +++|||+ |..|..-+..+..- ++    .++++++++++..+...      ..       -..+++.+|||||-+-+..
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~-~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~   80 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQ-GLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP   80 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred             EEEEECCCChHHHHHHHHHHhC-CCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence            6899999 99999888877665 43    99999988876666421      11       1689999999999888764

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.86  E-value=0.055  Score=51.97  Aligned_cols=64  Identities=17%  Similarity=0.236  Sum_probs=46.9

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc-----------------cCC-C-----cccccccCcE
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST-----------------KKG-M-----ATEDVITAKL  208 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~-----------------~~g-~-----~~~~v~~adv  208 (224)
                      ..+++|||+|.+|..-...++.. +++.+|+|++++.+.+.+.                 ..| +     ..+++.++|+
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~   83 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW   83 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence            35799999999999988887764 3459999999988765321                 012 1     3467889999


Q ss_pred             EEEecccc
Q psy13395        209 IYDKYQAQ  216 (224)
Q Consensus       209 vv~~~~~~  216 (224)
                      |+.+.-.+
T Consensus        84 Vieavpe~   91 (495)
T PRK07531         84 IQESVPER   91 (495)
T ss_pred             EEEcCcCC
Confidence            99886543

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.82  E-value=0.065  Score=47.93  Aligned_cols=65  Identities=11%  Similarity=0.141  Sum_probs=46.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCc---chHHhhhhcc----CC-------C-----cccccccCcEEE
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGL---TEGTVTGSTK----KG-------M-----ATEDVITAKLIY  210 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~---~~a~~~a~~~----~g-------~-----~~~~v~~advvv  210 (224)
                      ..++++|+|+|.+|++-+.++...-  .+.|+||+.   +++++++++.    ..       +     ..+.+.++||||
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilI  204 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILV  204 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEE
Confidence            4678999999999999888877643  259999997   7777776521    11       1     122345789999


Q ss_pred             Eecccc
Q psy13395        211 DKYQAQ  216 (224)
Q Consensus       211 ~~~~~~  216 (224)
                      .+|..-
T Consensus       205 NaTp~G  210 (289)
T PRK12548        205 NATLVG  210 (289)
T ss_pred             EeCCCC
Confidence            999754

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=94.78  E-value=0.061  Score=48.96  Aligned_cols=62  Identities=21%  Similarity=0.179  Sum_probs=43.7

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCC-cchHHhhhhccCCC----cccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRG-LTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~-~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~  216 (224)
                      .++++|||+|.||..+++.+..-- ++.++.+. .++.+.+.+  .|+    ..+++.+||||+.+...+
T Consensus         3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~--~Gv~~~s~~ea~~~ADiVvLaVpp~   70 (314)
T TIGR00465         3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATE--DGFKVGTVEEAIPQADLIMNLLPDE   70 (314)
T ss_pred             cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHH--CCCEECCHHHHHhcCCEEEEeCCcH
Confidence            468999999999999999987642 23555544 334444432  233    455678999999998766

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=94.77  E-value=0.057  Score=49.68  Aligned_cols=61  Identities=8%  Similarity=0.075  Sum_probs=46.0

Q ss_pred             EEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhcc--C-------CC-----cccccccCcEEEEecccc
Q psy13395        156 LAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTK--K-------GM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       156 l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~--~-------g~-----~~~~v~~advvv~~~~~~  216 (224)
                      |+|||+|.+|+.-++.+....+.   .|.+|+.++++++++..  .       .+     ..+.+.++||||.+.+..
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~   78 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF   78 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence            68999999999999999998763   99999999999998631  1       11     355678999999887765

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PLN02858 fructose-bisphosphate aldolase

Probab=94.77  E-value=0.046  Score=58.69  Aligned_cols=63  Identities=11%  Similarity=0.019  Sum_probs=50.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~  214 (224)
                      ..+++++||.|.+|....+.+... +++.+|||++++++.|.+..   ..-..+.+.++|+|++...
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~  389 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVA  389 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecC
Confidence            468899999999999999988765 34599999999999988742   1225567779999998766

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.72  E-value=0.069  Score=51.35  Aligned_cols=64  Identities=13%  Similarity=0.031  Sum_probs=47.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|.+|+..++.+...-- +.++++++.++.....  .|.    ..+.+.++||||++|+..|
T Consensus       253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~--~G~~~~~leell~~ADIVI~atGt~~  321 (476)
T PTZ00075        253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM--EGYQVVTLEDVVETADIFVTATGNKD  321 (476)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh--cCceeccHHHHHhcCCEEEECCCccc
Confidence            57899999999999999998875322 4888888876532221  232    4566789999999997654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.64  E-value=0.09  Score=46.93  Aligned_cols=62  Identities=11%  Similarity=0.035  Sum_probs=44.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHh-----------hhhcc---------------CCCcccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTV-----------TGSTK---------------KGMATEDVI  204 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~-----------~a~~~---------------~g~~~~~v~  204 (224)
                      +.++++|||+|.+|..-...++..- ++.+|+++++..+.           +.++.               .....+++.
T Consensus         4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~   83 (286)
T PRK07819          4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDFA   83 (286)
T ss_pred             CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHhC
Confidence            4568999999999998887766542 34999999998765           33210               001346788


Q ss_pred             cCcEEEEec
Q psy13395        205 TAKLIYDKY  213 (224)
Q Consensus       205 ~advvv~~~  213 (224)
                      ++|+|+.+-
T Consensus        84 ~~d~ViEav   92 (286)
T PRK07819         84 DRQLVIEAV   92 (286)
T ss_pred             CCCEEEEec
Confidence            999999884

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=94.60  E-value=0.068  Score=46.17  Aligned_cols=63  Identities=11%  Similarity=0.113  Sum_probs=45.3

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchH-HhhhhccC----C-CcccccccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEG-TVTGSTKK----G-MATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a-~~~a~~~~----g-~~~~~v~~advvv~~~~~~  216 (224)
                      .+++|+|+|.|+....+.+...- ++.|-+|..+++ ++.++..+    | -..+++..+||||-+....
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~   71 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFE   71 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHH
Confidence            47899999999999999988874 456665555554 44444322    2 2678888899999887544

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.57  E-value=0.11  Score=43.27  Aligned_cols=60  Identities=20%  Similarity=0.321  Sum_probs=39.7

Q ss_pred             EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---------cCCC-----------------cccccccCc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---------KKGM-----------------ATEDVITAK  207 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---------~~g~-----------------~~~~v~~ad  207 (224)
                      +|+|||+|.+|+.-...++.. +++.+|+++++..+...++         +.|.                 ..+++.++|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad   80 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD   80 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence            589999999998887777665 3359999999876443321         1111                 456666999


Q ss_pred             EEEEecc
Q psy13395        208 LIYDKYQ  214 (224)
Q Consensus       208 vvv~~~~  214 (224)
                      +||.+..
T Consensus        81 lViEai~   87 (180)
T PF02737_consen   81 LVIEAIP   87 (180)
T ss_dssp             EEEE-S-
T ss_pred             eehhhcc
Confidence            9999864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=94.56  E-value=0.095  Score=40.54  Aligned_cols=61  Identities=13%  Similarity=0.171  Sum_probs=45.1

Q ss_pred             EEEEEe-cCHhHHHHHHHHHHhCC-c---EEEeCCcchHHhhhhcc---CC--------CcccccccCcEEEEecccc
Q psy13395        155 VLAIMG-SGAQAYIHAKAFHASLK-L---KKYNRGLTEGTVTGSTK---KG--------MATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiG-aG~QA~~hl~a~~~v~~-i---~v~~R~~~~a~~~a~~~---~g--------~~~~~v~~advvv~~~~~~  216 (224)
                      +++|+| +|..|..-++.+.. .| +   .+++++.+..+.+.+..   .+        ...+++.+.|||+.++...
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~-hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~   77 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAE-HPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG   77 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-TSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH
T ss_pred             CEEEECCCCHHHHHHHHHHhc-CCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh
Confidence            589999 99999999999999 55 3   78888885444454421   11        2457789999999998764

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=94.56  E-value=0.079  Score=47.63  Aligned_cols=62  Identities=16%  Similarity=0.182  Sum_probs=45.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC-------cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM-------ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~-------~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||+|..|+.-++.+...-. +.+++|++++.+...+  .|.       ..+.+.++||||+++..
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~--~G~~~~~~~~l~~~l~~aDiVI~t~p~  220 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE--MGLSPFHLSELAEEVGKIDIIFNTIPA  220 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--cCCeeecHHHHHHHhCCCCEEEECCCh
Confidence            47899999999999998888876543 4999999876443322  222       34667899999998753

>PLN02494 adenosylhomocysteinase

Probab=94.53  E-value=0.069  Score=51.31  Aligned_cols=66  Identities=14%  Similarity=-0.040  Sum_probs=47.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHH-hhhhccC-CCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGT-VTGSTKK-GMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~-~~a~~~~-g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|+|+|.+|+..++.+...-- +.+|++++.++. ++..... -...+.+..+||||++|+..|
T Consensus       253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTGt~~  321 (477)
T PLN02494        253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGNKD  321 (477)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCCCcc
Confidence            47899999999999999999865422 488999987643 2222110 013566779999999998765

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=94.51  E-value=0.061  Score=56.21  Aligned_cols=65  Identities=14%  Similarity=0.074  Sum_probs=50.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---------------cEEEeCCcchHHhhhhccCC-------C-----cccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---------------LKKYNRGLTEGTVTGSTKKG-------M-----ATEDVI  204 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---------------i~v~~R~~~~a~~~a~~~~g-------~-----~~~~v~  204 (224)
                      ..++++|||+|.+|+.|++.+...-.               +.|.++++++++++++...+       +     ..+.+.
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            36799999999999999999987422               37899999999999874323       2     233446


Q ss_pred             cCcEEEEecccc
Q psy13395        205 TAKLIYDKYQAQ  216 (224)
Q Consensus       205 ~advvv~~~~~~  216 (224)
                      +.|+||.++..+
T Consensus       648 ~~DaVIsalP~~  659 (1042)
T PLN02819        648 QVDVVISLLPAS  659 (1042)
T ss_pred             CCCEEEECCCch
Confidence            799999998764

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.47  E-value=0.088  Score=48.96  Aligned_cols=66  Identities=17%  Similarity=0.204  Sum_probs=49.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--------CcEEEeCCcch-----HHhhhhccC------CC-----------ccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--------KLKKYNRGLTE-----GTVTGSTKK------GM-----------ATE  201 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--------~i~v~~R~~~~-----a~~~a~~~~------g~-----------~~~  201 (224)
                      +..+++|||+|.-|-+....+..-.        .+.+|.|+++-     ++.+.+.+.      |+           ..+
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e   89 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE   89 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence            6789999999999999999888653        35999999872     455544221      22           245


Q ss_pred             ccccCcEEEEeccccc
Q psy13395        202 DVITAKLIYDKYQAQH  217 (224)
Q Consensus       202 ~v~~advvv~~~~~~~  217 (224)
                      ++.+||+||-++..|.
T Consensus        90 av~~aDiIvlAVPsq~  105 (365)
T PTZ00345         90 AVEDADLLIFVIPHQF  105 (365)
T ss_pred             HHhcCCEEEEEcChHH
Confidence            7789999999987764

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.45  E-value=0.075  Score=51.35  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=46.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhh---------ccCC-----------------Ccccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGS---------TKKG-----------------MATEDVI  204 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~---------~~~g-----------------~~~~~v~  204 (224)
                      +.++|+|||+|.+|..-...+... +++.+|+|+++..+...+         ...|                 ...+++.
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~   83 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA   83 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence            467899999999999998887665 345999999998765321         0112                 1346778


Q ss_pred             cCcEEEEecc
Q psy13395        205 TAKLIYDKYQ  214 (224)
Q Consensus       205 ~advvv~~~~  214 (224)
                      ++|+||.+--
T Consensus        84 ~aDlVIEav~   93 (503)
T TIGR02279        84 DAGLVIEAIV   93 (503)
T ss_pred             CCCEEEEcCc
Confidence            9999999854

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=94.44  E-value=0.078  Score=48.76  Aligned_cols=60  Identities=18%  Similarity=0.170  Sum_probs=43.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCC----CcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKG----MATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g----~~~~~v~~advvv~~~~  214 (224)
                      ..++|+|||.|.||+.|.+.+.. +..  .+|+|... ...++.. .|    -..+.+.+||||+....
T Consensus        15 kgKtVGIIG~GsIG~amA~nL~d-~G~~ViV~~r~~~-s~~~A~~-~G~~v~sl~Eaak~ADVV~llLP   80 (335)
T PRK13403         15 QGKTVAVIGYGSQGHAQAQNLRD-SGVEVVVGVRPGK-SFEVAKA-DGFEVMSVSEAVRTAQVVQMLLP   80 (335)
T ss_pred             CcCEEEEEeEcHHHHHHHHHHHH-CcCEEEEEECcch-hhHHHHH-cCCEECCHHHHHhcCCEEEEeCC
Confidence            46889999999999999999875 444  78887643 3333322 12    26777889999998765

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=94.36  E-value=0.07  Score=47.65  Aligned_cols=62  Identities=15%  Similarity=0.060  Sum_probs=42.7

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC----Cc-EEEeCCcchHHhhhhccCCC-cccc--cccCcEEEEecc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL----KL-KKYNRGLTEGTVTGSTKKGM-ATED--VITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~----~i-~v~~R~~~~a~~~a~~~~g~-~~~~--v~~advvv~~~~  214 (224)
                      ..+++|||||.+|..-.+++..-.    .+ .|+.|+++++++|+..-.-+ ..++  ....|+||.+-+
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~   71 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAG   71 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCC
Confidence            368999999999999999987642    23 88999999999887641111 1222  245666665543

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.26  E-value=0.11  Score=47.41  Aligned_cols=62  Identities=16%  Similarity=0.166  Sum_probs=43.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---------cCCC--------------cccccccCc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---------KKGM--------------ATEDVITAK  207 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---------~~g~--------------~~~~v~~ad  207 (224)
                      +.++++|||+|.+|..-...++.. +++.+|+++++..+.+..+         +.|+              ..+++.+||
T Consensus         6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD   85 (321)
T PRK07066          6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD   85 (321)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence            568899999999998887776653 2349999998865543220         0111              246678999


Q ss_pred             EEEEec
Q psy13395        208 LIYDKY  213 (224)
Q Consensus       208 vvv~~~  213 (224)
                      +|+.+-
T Consensus        86 lViEav   91 (321)
T PRK07066         86 FIQESA   91 (321)
T ss_pred             EEEECC
Confidence            999874

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=94.23  E-value=0.086  Score=43.62  Aligned_cols=65  Identities=14%  Similarity=0.087  Sum_probs=45.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhc--cCCCcccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGST--KKGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~--~~g~~~~~v~~advvv~~~~~~  216 (224)
                      ..++|+|||.|.+|+.-.+.+...-- +.+|+|+....+.+.+.  ..--..+.+.++|+|+......
T Consensus        35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt  102 (178)
T PF02826_consen   35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLT  102 (178)
T ss_dssp             TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSS
T ss_pred             CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccc
Confidence            58899999999999999999885432 49999999876533331  1122566778999999876643

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=94.20  E-value=0.12  Score=46.53  Aligned_cols=62  Identities=16%  Similarity=0.191  Sum_probs=44.0

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHH-hhhhccCCC-----ccccc---ccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGT-VTGSTKKGM-----ATEDV---ITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~-~~a~~~~g~-----~~~~v---~~advvv~~~~~~  216 (224)
                      -+++|||+|.+|..|+..+.....+   .++++++++.. +++++ .|+     ..+++   .+-|+|+.+|...
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~-~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~   75 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARE-LGVKTSAEGVDGLLANPDIDIVFDATSAK   75 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHH-CCCCEEECCHHHHhcCCCCCEEEECCCcH
Confidence            3799999999999999888875443   89999998754 45543 232     12222   2578899998765

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.14  E-value=0.1  Score=46.79  Aligned_cols=62  Identities=13%  Similarity=0.184  Sum_probs=44.2

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---------cCC-------------C-----ccccccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---------KKG-------------M-----ATEDVIT  205 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---------~~g-------------~-----~~~~v~~  205 (224)
                      .+++|||+|.+|..-...+... +++.+|+|+++..+...++         ..|             +     ..+++.+
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            4799999999999888887765 3469999999876543210         011             1     2356789


Q ss_pred             CcEEEEeccc
Q psy13395        206 AKLIYDKYQA  215 (224)
Q Consensus       206 advvv~~~~~  215 (224)
                      +|+|+.+.-.
T Consensus        83 ad~Vi~avpe   92 (308)
T PRK06129         83 ADYVQESAPE   92 (308)
T ss_pred             CCEEEECCcC
Confidence            9999998754

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=94.07  E-value=0.1  Score=45.91  Aligned_cols=59  Identities=17%  Similarity=0.132  Sum_probs=41.6

Q ss_pred             cEEEEEec-CHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCC-----cccccccCcEEEEecc
Q psy13395        154 LVLAIMGS-GAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       154 ~~l~iiGa-G~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~  214 (224)
                      -+++|+|+ |.+|+.|++.+...-.+   -++++++++++.+  ...++     ..+.+...|+||..|.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~--~~~~i~~~~dl~~ll~~~DvVid~t~   69 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ--GALGVAITDDLEAVLADADVLIDFTT   69 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--CCCCccccCCHHHhccCCCEEEECCC
Confidence            47999998 99999999998765333   7789998877655  22232     1222347899997764

>PRK08605 D-lactate dehydrogenase; Validated

Probab=94.06  E-value=0.11  Score=47.43  Aligned_cols=63  Identities=24%  Similarity=0.217  Sum_probs=42.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchH-HhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEG-TVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a-~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||+|.+|+...+.+..-+..  ..|+|+.... +.+.. ...-..+.+.++|+|+..+..
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~-~~~~l~ell~~aDvIvl~lP~  210 (332)
T PRK08605        145 KDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVD-YKDTIEEAVEGADIVTLHMPA  210 (332)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhcc-ccCCHHHHHHhCCEEEEeCCC
Confidence            467899999999999999988544443  6666665432 11111 111245677899999988644

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.05  E-value=0.13  Score=46.76  Aligned_cols=64  Identities=19%  Similarity=0.168  Sum_probs=45.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchH-HhhhhccCCC-----------cccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEG-TVTGSTKKGM-----------ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a-~~~a~~~~g~-----------~~~~v~~advvv~~~~~~  216 (224)
                      +..+++|||+|..|..|+..+.....+   -++++++++. .+++++ .|+           ...+..+-|+|+.+|++.
T Consensus         3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~-~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~   81 (302)
T PRK08300          3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARR-LGVATSAEGIDGLLAMPEFDDIDIVFDATSAG   81 (302)
T ss_pred             CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHH-cCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence            346899999999999999999884333   8899998753 355543 232           111224679999999875

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.03  E-value=0.13  Score=45.58  Aligned_cols=63  Identities=13%  Similarity=0.029  Sum_probs=44.5

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc-----------------------cCCC-----ccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST-----------------------KKGM-----ATEDV  203 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~-----------------------~~g~-----~~~~v  203 (224)
                      .++++|||+|.+|......+...- ++.+|+++++..+...+.                       ...+     ..+++
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~   82 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV   82 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence            468999999999999888776542 359999998865544321                       0011     23467


Q ss_pred             ccCcEEEEeccc
Q psy13395        204 ITAKLIYDKYQA  215 (224)
Q Consensus       204 ~~advvv~~~~~  215 (224)
                      .++|+||.+.-.
T Consensus        83 ~~aDlVieavpe   94 (287)
T PRK08293         83 KDADLVIEAVPE   94 (287)
T ss_pred             cCCCEEEEeccC
Confidence            899999998753

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=93.99  E-value=0.12  Score=50.03  Aligned_cols=62  Identities=15%  Similarity=0.118  Sum_probs=45.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhh-----------hhcc----------C-----CCcccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVT-----------GSTK----------K-----GMATEDVI  204 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~-----------a~~~----------~-----g~~~~~v~  204 (224)
                      +.++++|||+|.+|..-...++.. +++.+|+++++.+++.           .++.          .     ....+++.
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~   85 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA   85 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC
Confidence            578899999999999888876654 3459999999988763           2210          0     01456788


Q ss_pred             cCcEEEEec
Q psy13395        205 TAKLIYDKY  213 (224)
Q Consensus       205 ~advvv~~~  213 (224)
                      ++|+||.+-
T Consensus        86 ~aDlViEav   94 (507)
T PRK08268         86 DCDLVVEAI   94 (507)
T ss_pred             CCCEEEEcC
Confidence            999999873

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=93.95  E-value=0.1  Score=52.10  Aligned_cols=64  Identities=19%  Similarity=0.059  Sum_probs=48.1

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhccC---CC--cccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTKK---GM--ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~~~---g~--~~~~v~~advvv~~~~~~  216 (224)
                      -++++|||+|.+|.+.++.+...-   .+.+|+|++++.+.+.+...   ..  ..+.+.++|+||.++..+
T Consensus         3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~   74 (735)
T PRK14806          3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL   74 (735)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH
Confidence            478999999999999999998754   25899999988766543211   01  234578999999998754

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=93.93  E-value=0.16  Score=43.79  Aligned_cols=67  Identities=13%  Similarity=0.088  Sum_probs=53.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCc-chHHhhhhcc------CCCcccccccCcEEEEecccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGL-TEGTVTGSTK------KGMATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~-~~a~~~a~~~------~g~~~~~v~~advvv~~~~~~~~  218 (224)
                      ..+.++|||.|..|..=++.|+..-.. +||+++. +..+.+++..      ..+..+.+..+++||.+|...+-
T Consensus        11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~l   85 (210)
T COG1648          11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEEL   85 (210)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHH
Confidence            567999999999999999999887764 9999888 4445555532      35678888889999999987543

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.92  E-value=0.12  Score=46.43  Aligned_cols=53  Identities=19%  Similarity=0.167  Sum_probs=39.7

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..+++|||+|.+|..-.+.+...- ++.+|+|+.+.          -..+.+.++|+|+.++..
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~----------~~~~~~~~advvi~~vp~   57 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL----------SLAAVLADADVIVSAVSM   57 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC----------CHHHHHhcCCEEEEECCh
Confidence            457999999999999999987663 46999998641          123455678888777654

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.90  E-value=0.14  Score=46.84  Aligned_cols=66  Identities=9%  Similarity=0.075  Sum_probs=50.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhcc-----C--CC-----------cccccccCcEEEEec
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTK-----K--GM-----------ATEDVITAKLIYDKY  213 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~-----~--g~-----------~~~~v~~advvv~~~  213 (224)
                      ...+++|||+|..|......+...-++.+|.|+++..+++.+..     .  ++           ..+++.++|+||-++
T Consensus         6 ~~mkI~IiGaGa~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilav   85 (341)
T PRK12439          6 REPKVVVLGGGSWGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGV   85 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEe
Confidence            35689999999999999988887655699999999887776521     1  11           234567899999998


Q ss_pred             cccc
Q psy13395        214 QAQH  217 (224)
Q Consensus       214 ~~~~  217 (224)
                      -.|+
T Consensus        86 ps~~   89 (341)
T PRK12439         86 PSHG   89 (341)
T ss_pred             CHHH
Confidence            7664

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=93.86  E-value=0.13  Score=47.06  Aligned_cols=64  Identities=20%  Similarity=0.205  Sum_probs=46.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|||+|.+|+.-.+.+...-. +.+|+|+++....+... ..-..+.+.+||+|+......
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~-~~~l~ell~~aDiVil~lP~t  209 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTY-KDSVKEAIKDADIISLHVPAN  209 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhc-cCCHHHHHhcCCEEEEeCCCc
Confidence            45689999999999999988875322 49999998665444321 112456778999999887654

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=93.80  E-value=0.15  Score=48.92  Aligned_cols=65  Identities=17%  Similarity=0.220  Sum_probs=49.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC--CCc---ccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK--GMA---TEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~--g~~---~~~v~~advvv~~~~~~  216 (224)
                      ..++++|+|+|..|+.-...+...- .+.+++|+.++++.+++...  .+.   .+++.++|+||.+|...
T Consensus       331 ~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g  401 (477)
T PRK09310        331 NNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS  401 (477)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence            4678999999999999988887643 24899999999998876421  111   23367899999998653

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.74  E-value=0.18  Score=44.25  Aligned_cols=63  Identities=16%  Similarity=0.142  Sum_probs=45.9

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC----C--------C-cccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK----G--------M-ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~----g--------~-~~~~v~~advvv~~~~~~~  217 (224)
                      +++|||+|.+|......+...- ++.+|.|+.++.+.+.+...    |        . ..+++..+|+||.++.+++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~~~   78 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKAYQ   78 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEeccccc
Confidence            5899999999998888887653 35999998887776654211    1        0 1334578999999988754

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=93.74  E-value=0.14  Score=44.22  Aligned_cols=63  Identities=10%  Similarity=0.056  Sum_probs=50.3

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC--------CC-----cccccccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK--------GM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~--------g~-----~~~~v~~advvv~~~~~~  216 (224)
                      ..++|+|+|..|+.-++.|...- .+.+..+++++++.+.+...        +.     ...-+.+||+||.+|+..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d   77 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND   77 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence            36899999999999999999984 46999999999988666322        11     344488999999999864

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=93.73  E-value=0.11  Score=47.51  Aligned_cols=62  Identities=18%  Similarity=0.094  Sum_probs=41.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchH-HhhhhccCCC----cccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEG-TVTGSTKKGM----ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a-~~~a~~~~g~----~~~~v~~advvv~~~~  214 (224)
                      +.++++|||+|.|++.|..-+..----.+++-.+.+. -+.|. ..|+    ..+++..||||.--+-
T Consensus        17 kgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~-~dGf~V~~v~ea~k~ADvim~L~P   83 (338)
T COG0059          17 KGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAK-EDGFKVYTVEEAAKRADVVMILLP   83 (338)
T ss_pred             cCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHH-hcCCEeecHHHHhhcCCEEEEeCc
Confidence            5789999999999999988765532114444333332 23332 2354    6889999999986553

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.66  E-value=0.12  Score=48.37  Aligned_cols=61  Identities=13%  Similarity=0.097  Sum_probs=47.5

Q ss_pred             EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc-----------------CC-C-----cccccccCcEEE
Q psy13395        155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK-----------------KG-M-----ATEDVITAKLIY  210 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~-----------------~g-~-----~~~~v~~advvv  210 (224)
                      +++|||+|.+|......+... +.+.+|++++++.+.+.+..                 .| +     ..+++.++|+||
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi   81 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII   81 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence            589999999999999998875 34599999999998877521                 23 2     234578999999


Q ss_pred             Eeccc
Q psy13395        211 DKYQA  215 (224)
Q Consensus       211 ~~~~~  215 (224)
                      .+...
T Consensus        82 i~vpt   86 (411)
T TIGR03026        82 ICVPT   86 (411)
T ss_pred             EEeCC
Confidence            88764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.54  E-value=0.17  Score=45.50  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=46.7

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC------CC-----------ccccc-ccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK------GM-----------ATEDV-ITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~------g~-----------~~~~v-~~advvv~~~~~  215 (224)
                      +++|||+|.+|..-...+...- ++.+|+|+++..+.+.+.+.      +.           ..+++ .++|+||-++-.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks   81 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT   81 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence            5899999999999888887764 45999999988877765321      21           11344 488999998877


Q ss_pred             cc
Q psy13395        216 QH  217 (224)
Q Consensus       216 ~~  217 (224)
                      ++
T Consensus        82 ~~   83 (326)
T PRK14620         82 QQ   83 (326)
T ss_pred             HH
Confidence            64

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.52  E-value=0.18  Score=44.72  Aligned_cols=64  Identities=17%  Similarity=0.156  Sum_probs=45.0

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc------------cCC-------------C----cccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST------------KKG-------------M----ATED  202 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~------------~~g-------------~----~~~~  202 (224)
                      -++++|||+|.+|..-...+...- ++.+|+++++..+...++            ..|             +    ..++
T Consensus         3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   82 (291)
T PRK06035          3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYES   82 (291)
T ss_pred             CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHHH
Confidence            468999999999999888876643 359999999876532110            001             1    2356


Q ss_pred             cccCcEEEEecccc
Q psy13395        203 VITAKLIYDKYQAQ  216 (224)
Q Consensus       203 v~~advvv~~~~~~  216 (224)
                      +.++|+||.+...+
T Consensus        83 ~~~aDlVieav~e~   96 (291)
T PRK06035         83 LSDADFIVEAVPEK   96 (291)
T ss_pred             hCCCCEEEEcCcCc
Confidence            78999999997544

>PRK08655 prephenate dehydrogenase; Provisional

Probab=93.26  E-value=0.17  Score=47.97  Aligned_cols=61  Identities=13%  Similarity=0.195  Sum_probs=47.1

Q ss_pred             EEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEecccc
Q psy13395        155 VLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~  216 (224)
                      +++||| +|.+|.+-.+++.... .+.+|+|++++++.++... |+     ..+.+.++|+||.++..+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~-gv~~~~~~~e~~~~aDvVIlavp~~   69 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL-GVEYANDNIDAAKDADIVIISVPIN   69 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc-CCeeccCHHHHhccCCEEEEecCHH
Confidence            689998 8999999999987743 3599999998876666542 22     345678999999987654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.25  E-value=0.14  Score=38.56  Aligned_cols=63  Identities=11%  Similarity=0.075  Sum_probs=48.1

Q ss_pred             EEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC----C-------CcccccccCcEEEEecccccc
Q psy13395        156 LAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK----G-------MATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       156 l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~----g-------~~~~~v~~advvv~~~~~~~~  218 (224)
                      +.|+|+|..|+.-++.+..-. ++.+..++++..+.+.+...    |       +....+.+||.||..|.....
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~   75 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE   75 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence            579999999999999999944 34999999999888876421    1       145677899999999875443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=93.04  E-value=0.21  Score=47.29  Aligned_cols=65  Identities=12%  Similarity=0.109  Sum_probs=51.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhccC-------------C-C----cccccccCcEEEEec
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKK-------------G-M----ATEDVITAKLIYDKY  213 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~~-------------g-~----~~~~v~~advvv~~~  213 (224)
                      ++.+++|||.|.+|.-....+..-+++.+|++++++.+.|.+...             | +    ..+++.++|+||.+-
T Consensus         5 ~~mkI~vIGlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V   84 (425)
T PRK15182          5 DEVKIAIIGLGYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV   84 (425)
T ss_pred             CCCeEEEECcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence            567899999999999999998886566999999999999984211             1 1    355688999999886


Q ss_pred             ccc
Q psy13395        214 QAQ  216 (224)
Q Consensus       214 ~~~  216 (224)
                      ...
T Consensus        85 ptp   87 (425)
T PRK15182         85 PTP   87 (425)
T ss_pred             CCC
Confidence            643

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=93.00  E-value=0.22  Score=45.69  Aligned_cols=64  Identities=14%  Similarity=0.104  Sum_probs=43.1

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhcc-----------------CCC-----cccccccCcE
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTK-----------------KGM-----ATEDVITAKL  208 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~-----------------~g~-----~~~~v~~adv  208 (224)
                      .+++|+|+|.+|+.+++++...-.+   -+++++++..+.++...                 .++     ..+...+.|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            3799999999999999998764223   67777765555444311                 011     2333458899


Q ss_pred             EEEeccccc
Q psy13395        209 IYDKYQAQH  217 (224)
Q Consensus       209 vv~~~~~~~  217 (224)
                      |+.+|+...
T Consensus        82 VIdaT~~~~   90 (341)
T PRK04207         82 VVDATPGGV   90 (341)
T ss_pred             EEECCCchh
Confidence            999987653

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=92.93  E-value=0.21  Score=46.63  Aligned_cols=62  Identities=8%  Similarity=0.011  Sum_probs=46.9

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhcc--------------C-C-C-----cccccccCcEEEEec
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTK--------------K-G-M-----ATEDVITAKLIYDKY  213 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~--------------~-g-~-----~~~~v~~advvv~~~  213 (224)
                      +|+|||+|.+|.-....+..-+++.+|++++++.+.+.+..              . + +     ..+++.++|+||.+.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~V   81 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIAT   81 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEeC
Confidence            58999999999988877665445699999999998887621              1 1 1     245578999999988


Q ss_pred             ccc
Q psy13395        214 QAQ  216 (224)
Q Consensus       214 ~~~  216 (224)
                      ...
T Consensus        82 pt~   84 (388)
T PRK15057         82 PTD   84 (388)
T ss_pred             CCC
Confidence            743

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.76  E-value=0.34  Score=41.29  Aligned_cols=65  Identities=15%  Similarity=0.160  Sum_probs=49.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcc-hHHhhhhcc------CCCcccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLT-EGTVTGSTK------KGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~-~a~~~a~~~------~g~~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|||.|..|..-++.++..-. +.|++++.. ..+.+++..      ..+..+++.++|+||.+|+..
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~   80 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDE   80 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCH
Confidence            46799999999999999999988554 499988765 334554421      133577899999999999865

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>KOG2741|consensus

Probab=92.74  E-value=0.11  Score=48.00  Aligned_cols=43  Identities=16%  Similarity=0.203  Sum_probs=38.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--C--c-EEEeCCcchHHhhhhc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--K--L-KKYNRGLTEGTVTGST  194 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~--i-~v~~R~~~~a~~~a~~  194 (224)
                      ...+.+|+|+|.+++++++++..+.  +  | -|.+|+.++|.+||++
T Consensus         5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~   52 (351)
T KOG2741|consen    5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQR   52 (351)
T ss_pred             ceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHh
Confidence            5678999999999999999999887  3  4 9999999999999985

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=92.69  E-value=0.3  Score=44.31  Aligned_cols=63  Identities=14%  Similarity=0.039  Sum_probs=47.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhccC-------CC-----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGSTKK-------GM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~~~-------g~-----~~~~v~~advvv~~~~~  215 (224)
                      ...+++|||+|..|..-...+.. .++    .+++++.++++..+....       ..     ..+++.+|||||-+-+.
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~-~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~   83 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVN-QGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA   83 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence            57799999999999888776553 443    999999988766654211       11     46889999999987665

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=92.46  E-value=0.22  Score=47.74  Aligned_cols=61  Identities=16%  Similarity=0.131  Sum_probs=44.7

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc-cCC--C----ccccc----ccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST-KKG--M----ATEDV----ITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~-~~g--~----~~~~v----~~advvv~~~~~  215 (224)
                      .++|||.|.+|....+.+..-- ++.+|||++++.+.|.+. ..|  +    ..+++    .++|+|+....+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~   73 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKA   73 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCC
Confidence            3799999999999999987753 359999999999999875 211  2    22333    357988876543

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=92.31  E-value=0.24  Score=45.00  Aligned_cols=62  Identities=11%  Similarity=0.199  Sum_probs=43.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhcc-CCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTK-KGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~-~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+.-.+-+.. +..  .+|+|++++...+.... ..-..+.+.++|+|+....
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~a-fG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lP  199 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQT-WGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLP  199 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCC
Confidence            56899999999999999888775 543  88998876532221111 1124677789999998654

>PRK13243 glyoxylate reductase; Reviewed

Probab=92.20  E-value=0.3  Score=44.65  Aligned_cols=64  Identities=11%  Similarity=0.018  Sum_probs=44.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc-cCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST-KKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~-~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+.-.+.+...- .+.+|+|+++........ ...-..+.+.+||+|+..+..
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~  214 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPL  214 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCC
Confidence            5689999999999999999887542 248999987543211110 111245667899999988753

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=92.19  E-value=0.2  Score=40.47  Aligned_cols=39  Identities=13%  Similarity=0.052  Sum_probs=27.4

Q ss_pred             EEEeCCcchHHhhhhc--cCCC-----------cccccccCcEEEEeccccc
Q psy13395        179 KKYNRGLTEGTVTGST--KKGM-----------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       179 ~v~~R~~~~a~~~a~~--~~g~-----------~~~~v~~advvv~~~~~~~  217 (224)
                      .||+|+....+.|+..  .+|.           ..+.+++|||||++|+..+
T Consensus        32 ~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~   83 (140)
T cd05212          32 LVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPE   83 (140)
T ss_pred             EEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCC
Confidence            7777777777666652  1222           3567999999999998763

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PLN03139 formate dehydrogenase; Provisional

Probab=92.01  E-value=0.34  Score=45.40  Aligned_cols=62  Identities=6%  Similarity=0.026  Sum_probs=43.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhc---cCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGST---KKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~---~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+..++.+.. +..  .+|+|+....+.+.+.   ...-..+.+.++|||+....
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~a-fG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lP  264 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKP-FNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTP  264 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHH-CCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCC
Confidence            57799999999999999999876 543  8889886444433221   11124566679999998654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.00  E-value=0.36  Score=46.92  Aligned_cols=40  Identities=8%  Similarity=0.110  Sum_probs=33.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhh
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVT  191 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~  191 (224)
                      ...+++|+|+|..|...++.+...-.. .++++++++.+.+
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a  203 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  203 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468999999999999999998887664 8899998865544

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=91.98  E-value=0.42  Score=42.23  Aligned_cols=61  Identities=8%  Similarity=0.054  Sum_probs=37.7

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCC--c-EEEeCCcchHHhhhhcc-CCC----ccccc-ccCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLK--L-KKYNRGLTEGTVTGSTK-KGM----ATEDV-ITAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~-~g~----~~~~v-~~advvv~~~~~  215 (224)
                      .+++|||+|.+|+.|++.+...-.  + .++.+... .++..+.. .++    ..+++ .+.|+||..|..
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~   71 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRALGEAVRVVSSVDALPQRPDLVVECAGH   71 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhhhccCCeeeCCHHHhccCCCEEEECCCH
Confidence            379999999999999999887533  3 66654432 22222211 122    22333 458999988875

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=91.98  E-value=0.34  Score=44.55  Aligned_cols=64  Identities=19%  Similarity=0.244  Sum_probs=50.4

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccC------CC-----------cccccccCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKK------GM-----------ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~------g~-----------~~~~v~~advvv~~~~~  215 (224)
                      .+++|||+|.=|-+....+..-.+ +++|.|+++-.+++...+.      |+           ..+++.++|+||-+.-.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs   81 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS   81 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence            479999999999999888888754 5999999999888776421      32           35566679999998877


Q ss_pred             cc
Q psy13395        216 QH  217 (224)
Q Consensus       216 ~~  217 (224)
                      |.
T Consensus        82 ~~   83 (329)
T COG0240          82 QA   83 (329)
T ss_pred             HH
Confidence            64

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=91.91  E-value=0.39  Score=43.62  Aligned_cols=62  Identities=11%  Similarity=-0.043  Sum_probs=44.1

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhc----c--CC-------CcccccccCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGST----K--KG-------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~----~--~g-------~~~~~v~~advvv~~~~~  215 (224)
                      ...|+|||+|..|...+..+.. .++    .++++++++++..+..    .  ..       -..+++.+|||||-+-+.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~-~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~~~adivvitaG~   81 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILA-KGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAGA   81 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHhCCCCEEEECCCC
Confidence            4589999999999887776543 343    9999988876554431    1  11       156789999999987665

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.91  E-value=0.29  Score=45.95  Aligned_cols=62  Identities=8%  Similarity=0.106  Sum_probs=47.2

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhcc-CC-----C-------cccccccCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTK-KG-----M-------ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~-~g-----~-------~~~~v~~advvv~~~~~  215 (224)
                      .+++|||+|.+|+.-++-+++-.  .|.|-+|++++++++.+.. ..     +       ..+.|.+.|+||.+-..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~   78 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP   78 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence            57899999999999888877655  3599999999988886521 11     1       45777888999987543

>PLN02256 arogenate dehydrogenase

Probab=91.83  E-value=0.4  Score=43.34  Aligned_cols=62  Identities=15%  Similarity=0.100  Sum_probs=43.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----ccc-cc-ccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATE-DV-ITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~-~v-~~advvv~~~~~~  216 (224)
                      ...+++|||+|.+|.+..+++...- .+.+|+|+...  +.+.. .|+    ..+ .+ .++|+||-++..+
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~--~~a~~-~gv~~~~~~~e~~~~~aDvVilavp~~  103 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS--DIAAE-LGVSFFRDPDDFCEEHPDVVLLCTSIL  103 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH--HHHHH-cCCeeeCCHHHHhhCCCCEEEEecCHH
Confidence            6779999999999999999987642 35889988642  33332 233    222 23 3689999988654

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.80  E-value=0.39  Score=42.29  Aligned_cols=62  Identities=10%  Similarity=0.063  Sum_probs=44.4

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHh-----------hhhcc-----------CCC----cccccccC
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTV-----------TGSTK-----------KGM----ATEDVITA  206 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~-----------~a~~~-----------~g~----~~~~v~~a  206 (224)
                      ++++|||+|.+|..-...+...- ++.+|++++++.+.           +.+..           ..+    ..+++.++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~a   83 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKDA   83 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhccC
Confidence            57999999999999999887653 35999999988742           22211           011    33567899


Q ss_pred             cEEEEeccc
Q psy13395        207 KLIYDKYQA  215 (224)
Q Consensus       207 dvvv~~~~~  215 (224)
                      |+||.+.-.
T Consensus        84 DlVi~av~e   92 (282)
T PRK05808         84 DLVIEAATE   92 (282)
T ss_pred             Ceeeecccc
Confidence            999998753

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=91.71  E-value=0.3  Score=46.87  Aligned_cols=40  Identities=15%  Similarity=0.110  Sum_probs=35.1

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST  194 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~  194 (224)
                      +++|||.|.+|....+.+...- .+.+|||++++.+.|.+.
T Consensus         3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~   43 (470)
T PTZ00142          3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKK   43 (470)
T ss_pred             EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh
Confidence            6999999999999999988653 459999999999999863

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=91.67  E-value=0.61  Score=45.31  Aligned_cols=40  Identities=8%  Similarity=0.101  Sum_probs=33.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhh
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVT  191 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~  191 (224)
                      ...+++|||+|+.|...+.+....-.. .++++++++.+..
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~a  204 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQV  204 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            589999999999999999998876654 8999998776543

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=91.66  E-value=0.38  Score=42.86  Aligned_cols=63  Identities=17%  Similarity=0.131  Sum_probs=46.2

Q ss_pred             CcEEEEEecCHhH-HHHHHHHHHhCC---c-EEEeCCcchHHhhhhccC---CC--ccccccc--CcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQA-YIHAKAFHASLK---L-KKYNRGLTEGTVTGSTKK---GM--ATEDVIT--AKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA-~~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~---g~--~~~~v~~--advvv~~~~~  215 (224)
                      ..+++|||+|..+ ..|+.++.....   + -+++|+++++++|+++..   .+  ..+.+..  -|+|+-+|..
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~   77 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPN   77 (342)
T ss_pred             eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCC
Confidence            5689999999665 679999988754   3 999999999999998642   12  2333332  5888877763

>PRK06223 malate dehydrogenase; Reviewed

Probab=91.55  E-value=0.36  Score=43.10  Aligned_cols=61  Identities=11%  Similarity=0.066  Sum_probs=43.7

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhc------cCC--------CcccccccCcEEEEecc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGST------KKG--------MATEDVITAKLIYDKYQ  214 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~------~~g--------~~~~~v~~advvv~~~~  214 (224)
                      .+++|||+|.+|...+..+...-  .+.++++++++++..+..      ..+        -..+++.+||+||.+-+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~~   79 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITAG   79 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECCC
Confidence            57999999999999888776532  459999988876554321      011        13477899999998754

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=91.50  E-value=0.32  Score=44.56  Aligned_cols=62  Identities=16%  Similarity=0.062  Sum_probs=41.4

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC--CCcccccccCcEEEEecc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK--GMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~--g~~~~~v~~advvv~~~~  214 (224)
                      .++|+|||.|.+|+.-.+-+.... ++..|+|...+.........  .-..+-+.+||||+.-+-
T Consensus       142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~P  206 (324)
T COG0111         142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLP  206 (324)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCC
Confidence            779999999999998887765542 34999994444322222111  225667779999987553

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=91.48  E-value=0.41  Score=36.72  Aligned_cols=61  Identities=11%  Similarity=0.155  Sum_probs=39.9

Q ss_pred             EEEEEe-cCHhHHHHHHHHHHhCC--c-EEEeCCcchHHhhhhccC--------CCcccccc--cCcEEEEeccc
Q psy13395        155 VLAIMG-SGAQAYIHAKAFHASLK--L-KKYNRGLTEGTVTGSTKK--------GMATEDVI--TAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiG-aG~QA~~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~~--------g~~~~~v~--~advvv~~~~~  215 (224)
                      +++|+| +|..++.+++++...-.  + .+++++.++.+.+.....        .+..+.+.  ++|+|+.++..
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~   75 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH   75 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence            479999 59999999999888543  4 677776555444443211        12223333  89999998764

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=91.45  E-value=0.41  Score=43.61  Aligned_cols=62  Identities=15%  Similarity=0.128  Sum_probs=43.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhh-------c--cCC-------------C----cccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGS-------T--KKG-------------M----ATEDVI  204 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~-------~--~~g-------------~----~~~~v~  204 (224)
                      .-++++|||+|.+|.--...+... +++.+|+++++.+++-..       +  ..|             +    ..+++.
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~   81 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK   81 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence            357899999999998777766665 677999999665432211       0  001             0    234899


Q ss_pred             cCcEEEEec
Q psy13395        205 TAKLIYDKY  213 (224)
Q Consensus       205 ~advvv~~~  213 (224)
                      ++|+||.+-
T Consensus        82 ~~DlVIEAv   90 (307)
T COG1250          82 DADLVIEAV   90 (307)
T ss_pred             cCCEEEEec
Confidence            999999874

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=91.30  E-value=0.34  Score=45.70  Aligned_cols=62  Identities=11%  Similarity=0.123  Sum_probs=43.0

Q ss_pred             EEEEEecCHhHHH--HHHHHH---HhC--CcEEEeCCcchHHhhhhc------cCCC---------cccccccCcEEEEe
Q psy13395        155 VLAIMGSGAQAYI--HAKAFH---ASL--KLKKYNRGLTEGTVTGST------KKGM---------ATEDVITAKLIYDK  212 (224)
Q Consensus       155 ~l~iiGaG~QA~~--hl~a~~---~v~--~i~v~~R~~~~a~~~a~~------~~g~---------~~~~v~~advvv~~  212 (224)
                      +++|||+|..+..  .++.+.   ...  .+.+|++++++++.....      ..+.         ..+++.+||+||.+
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a   81 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT   81 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence            5899999998765  333444   222  249999999988766541      1111         25788999999999


Q ss_pred             cccc
Q psy13395        213 YQAQ  216 (224)
Q Consensus       213 ~~~~  216 (224)
                      .+.+
T Consensus        82 i~~~   85 (423)
T cd05297          82 IQVG   85 (423)
T ss_pred             eEec
Confidence            9864

linked to 3D####ucture

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=91.21  E-value=0.52  Score=42.52  Aligned_cols=62  Identities=15%  Similarity=0.011  Sum_probs=45.8

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHh----hhhcc--C------CCcccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTV----TGSTK--K------GMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~----~a~~~--~------g~~~~~v~~advvv~~~~~~  216 (224)
                      +++|||+|..|...+.++.....   +.++++++++++.    +.+..  .      .-..+++.+||+||.+.+..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~   78 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN   78 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence            58999999999998888776542   3999999987765    33211  0      01457899999999988764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=91.21  E-value=0.35  Score=44.57  Aligned_cols=63  Identities=19%  Similarity=0.198  Sum_probs=44.2

Q ss_pred             EEEEEecCHhHHHHHHHHHHh---------CCcEEEeC-----CcchHHhhhhcc------CCC-----------ccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHAS---------LKLKKYNR-----GLTEGTVTGSTK------KGM-----------ATEDV  203 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v---------~~i~v~~R-----~~~~a~~~a~~~------~g~-----------~~~~v  203 (224)
                      +++|||+|.-|.+-...+..-         .++++|.|     +.+-.+.+.+.+      .|+           ..+++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            479999999999999988763         34599999     334444444321      132           24567


Q ss_pred             ccCcEEEEeccccc
Q psy13395        204 ITAKLIYDKYQAQH  217 (224)
Q Consensus       204 ~~advvv~~~~~~~  217 (224)
                      .+||+||-++-.|.
T Consensus        81 ~~ADiIIlAVPs~~   94 (342)
T TIGR03376        81 KGADILVFVIPHQF   94 (342)
T ss_pred             hcCCEEEEECChHH
Confidence            89999999987764

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=91.19  E-value=0.37  Score=44.73  Aligned_cols=54  Identities=15%  Similarity=0.108  Sum_probs=40.6

Q ss_pred             CCcEEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      +..+++||| +|.+|.+-.+++...- ++.+|+|+..          ....+.+.++|+||.++--
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~----------~~~~~~~~~aDlVilavP~  152 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW----------DRAEDILADAGMVIVSVPI  152 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc----------hhHHHHHhcCCEEEEeCcH
Confidence            668999999 9999999999998753 3599998642          1123446688888887643

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=91.15  E-value=0.5  Score=44.46  Aligned_cols=62  Identities=15%  Similarity=0.098  Sum_probs=46.7

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc-----------------CCC--cccccccCcEEEEec
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK-----------------KGM--ATEDVITAKLIYDKY  213 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~-----------------~g~--~~~~v~~advvv~~~  213 (224)
                      .+++|||.|.+|......+... +++.+|++++++.+.+.+..                 .|.  ...++.++|+||.+.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            5799999999999999998886 44699999999998865321                 111  112345899999887


Q ss_pred             cc
Q psy13395        214 QA  215 (224)
Q Consensus       214 ~~  215 (224)
                      ..
T Consensus        84 pt   85 (415)
T PRK11064         84 PT   85 (415)
T ss_pred             CC
Confidence            75

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=91.15  E-value=0.36  Score=42.28  Aligned_cols=61  Identities=13%  Similarity=0.010  Sum_probs=41.9

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC---C--cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL---K--LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~---~--i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      .+++|||+|.+|..-++++..--   +  +++++|+.++.   ......-..+.+.++|+||-++..|+
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~D~Vilavkp~~   69 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT---PFVYLQSNEELAKTCDIIVLAVKPDL   69 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC---CeEEeCChHHHHHhCCEEEEEeCHHH
Confidence            47999999999999999998753   2  37777766542   11111113344668999999887765

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=91.05  E-value=0.67  Score=40.34  Aligned_cols=65  Identities=17%  Similarity=0.172  Sum_probs=49.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcch-HHhhhhc------cCCCcccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTE-GTVTGST------KKGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~-a~~~a~~------~~g~~~~~v~~advvv~~~~~~  216 (224)
                      +.++++|||.|.+|..-++.|+..-. ++|+++.... .+.++..      ...+..+++.++++||.+|...
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~   96 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDE   96 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCH
Confidence            46799999999999999998888543 5999887642 3445431      2245788899999999999754

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=90.87  E-value=0.79  Score=37.23  Aligned_cols=29  Identities=14%  Similarity=0.125  Sum_probs=22.7

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCCc---EEEeC
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLKL---KKYNR  183 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R  183 (224)
                      +++|+|+|.+|+.+++++.....+   .+.++
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            689999999999999998764333   55553

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK11579 putative oxidoreductase; Provisional

Probab=90.81  E-value=0.5  Score=42.89  Aligned_cols=62  Identities=15%  Similarity=0.134  Sum_probs=40.5

Q ss_pred             CcEEEEEecCHhHH-HHHHHHHHhCCc---EEEeCCcchHHh-hhh-ccCCCcccccc---cCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAY-IHAKAFHASLKL---KKYNRGLTEGTV-TGS-TKKGMATEDVI---TAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~-~hl~a~~~v~~i---~v~~R~~~~a~~-~a~-~~~g~~~~~v~---~advvv~~~~~  215 (224)
                      .-+++|||+|.+|+ .|+.++...-.+   -|++++++++++ +.. .... ..+++.   +-|+|+-+|..
T Consensus         4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~-~~~ell~~~~vD~V~I~tp~   74 (346)
T PRK11579          4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVS-EPQHLFNDPNIDLIVIPTPN   74 (346)
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeC-CHHHHhcCCCCCEEEEcCCc
Confidence            46899999999998 688888775433   889999877642 111 0011 233332   46888888763

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=90.81  E-value=0.5  Score=42.51  Aligned_cols=62  Identities=15%  Similarity=0.212  Sum_probs=43.6

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC------C-------------CcccccccCcEEEEec
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK------G-------------MATEDVITAKLIYDKY  213 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~------g-------------~~~~~v~~advvv~~~  213 (224)
                      .+++|||+|.+|..-...+... +++.+|+|++. .+.+.+...      +             ...+++..+|+||.++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence            3699999999999999988776 34688999753 344443110      0             1235677899999988


Q ss_pred             ccc
Q psy13395        214 QAQ  216 (224)
Q Consensus       214 ~~~  216 (224)
                      ..+
T Consensus        82 k~~   84 (341)
T PRK08229         82 KSA   84 (341)
T ss_pred             cCc
Confidence            665

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=90.75  E-value=0.4  Score=43.93  Aligned_cols=61  Identities=16%  Similarity=0.184  Sum_probs=44.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcc-hHHhhh-hccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLT-EGTVTG-STKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~-~a~~~a-~~~~g~~~~~v~~advvv~~~~  214 (224)
                      .-++++|||.|.+|+.-.+-+. .|..  ..|+|++. ..++.. -+... ..+-+.+||+|+-...
T Consensus       145 ~gktvGIiG~GrIG~avA~r~~-~Fgm~v~y~~~~~~~~~~~~~~~~y~~-l~ell~~sDii~l~~P  209 (324)
T COG1052         145 RGKTLGIIGLGRIGQAVARRLK-GFGMKVLYYDRSPNPEAEKELGARYVD-LDELLAESDIISLHCP  209 (324)
T ss_pred             CCCEEEEECCCHHHHHHHHHHh-cCCCEEEEECCCCChHHHhhcCceecc-HHHHHHhCCEEEEeCC
Confidence            5899999999999999999988 6763  88898874 122222 12223 7788889999987543

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=90.72  E-value=0.56  Score=43.07  Aligned_cols=61  Identities=13%  Similarity=0.085  Sum_probs=40.8

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCC--c-EEEeCCc-chHHhhhhccCCC--cccccccCcEEEEecc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLK--L-KKYNRGL-TEGTVTGSTKKGM--ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~--i-~v~~R~~-~~a~~~a~~~~g~--~~~~v~~advvv~~~~  214 (224)
                      .-+++|+|+|.+|+.|++++...-.  + -+|+|++ +++...... ...  ..+.+.+.|+|+-.|.
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v-~~~~d~~e~l~~iDVViIctP   69 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPV-YAVADDEKHLDDVDVLILCMG   69 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCc-cccCCHHHhccCCCEEEEcCC
Confidence            4689999999999999999886422  3 7899986 443321111 111  2344567899988764

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.49  E-value=0.46  Score=43.04  Aligned_cols=54  Identities=13%  Similarity=0.054  Sum_probs=42.7

Q ss_pred             CCcEEEEEe-cCHhHHHHHHHHHHhC-CcEEE-eCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMG-SGAQAYIHAKAFHASL-KLKKY-NRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiG-aG~QA~~hl~a~~~v~-~i~v~-~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++||| .|.+|+-..+.|.... .+.+| +|+++            ..+.+.+|||||++++..+
T Consensus       157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~------------l~e~~~~ADIVIsavg~~~  213 (296)
T PRK14188        157 SGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD------------LPAVCRRADILVAAVGRPE  213 (296)
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC------------HHHHHhcCCEEEEecCChh
Confidence            689999999 9999999988887643 34999 58762            3556778999999988654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=90.36  E-value=0.66  Score=43.21  Aligned_cols=68  Identities=16%  Similarity=0.132  Sum_probs=51.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC-------------cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM-------------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~-------------~~~~v~~advvv~~~~~~~  217 (224)
                      ..+++.|+|+|..|+.-++.+...- ++.+.++++++.+.+.+...++             ....+.+||.||..+....
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~  309 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE  309 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence            4789999999999999999877632 3499999999887776532221             3567789999999887655


Q ss_pred             cc
Q psy13395        218 SN  219 (224)
Q Consensus       218 ~~  219 (224)
                      .|
T Consensus       310 ~n  311 (453)
T PRK09496        310 AN  311 (453)
T ss_pred             HH
Confidence            44

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=90.23  E-value=0.51  Score=43.48  Aligned_cols=61  Identities=10%  Similarity=0.061  Sum_probs=41.9

Q ss_pred             EEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhcc-----------------CCC-----cccccccCcEEE
Q psy13395        156 LAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTK-----------------KGM-----ATEDVITAKLIY  210 (224)
Q Consensus       156 l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~-----------------~g~-----~~~~v~~advvv  210 (224)
                      ++|+|+|.+|+.|++++...-.+   -|.+.+++.+..++...                 .++     ..+-+.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            58999999999999998764223   67777777655555411                 011     223346899999


Q ss_pred             Eecccc
Q psy13395        211 DKYQAQ  216 (224)
Q Consensus       211 ~~~~~~  216 (224)
                      .+|+..
T Consensus        81 e~Tp~~   86 (333)
T TIGR01546        81 DATPGG   86 (333)
T ss_pred             ECCCCC
Confidence            988754

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PTZ00117 malate dehydrogenase; Provisional

Probab=90.13  E-value=0.68  Score=42.03  Aligned_cols=63  Identities=14%  Similarity=0.066  Sum_probs=42.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhh------ccCC--------CcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGS------TKKG--------MATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~------~~~g--------~~~~~v~~advvv~~~~  214 (224)
                      +..+++|||+|.++..-...+. ..+   +.+++++++.++..+-      ...+        -..+++.+||+||.+-+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~ADiVVitag   82 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDSDVVVITAG   82 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCCCEEEECCC
Confidence            4568999999999988555443 334   3899999876543221      1111        14568999999998765


Q ss_pred             c
Q psy13395        215 A  215 (224)
Q Consensus       215 ~  215 (224)
                      .
T Consensus        83 ~   83 (319)
T PTZ00117         83 V   83 (319)
T ss_pred             C
Confidence            4

>PLN02712 arogenate dehydrogenase

Probab=90.04  E-value=0.61  Score=46.70  Aligned_cols=61  Identities=20%  Similarity=0.196  Sum_probs=42.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccc-cc-cCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATED-VI-TAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~-v~-~advvv~~~~~  215 (224)
                      ...+++|||+|.+|.+..+++...- .+.+|+|+.+. +. +.+ .|+    ..++ +. .+|+||.++-.
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~-a~~-~Gv~~~~~~~el~~~~aDvVILavP~  435 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DE-AQK-LGVSYFSDADDLCEEHPEVILLCTSI  435 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HH-HHH-cCCeEeCCHHHHHhcCCCEEEECCCh
Confidence            4678999999999999999998742 35899998643 22 222 333    2233 33 58999998764

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=90.02  E-value=0.61  Score=45.35  Aligned_cols=65  Identities=9%  Similarity=0.102  Sum_probs=47.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC--CCcccc-----cccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK--GMATED-----VITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~--g~~~~~-----v~~advvv~~~~~~  216 (224)
                      ..++++|+|+|..|+.-+.++...- .+.++||+.++++.+++...  .+..++     ...+||||.+|...
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vG  450 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVG  450 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCC
Confidence            4578999999999999999988753 35899999999999987432  111111     23579999888655

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=89.68  E-value=0.66  Score=42.03  Aligned_cols=61  Identities=15%  Similarity=0.048  Sum_probs=44.2

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhc------cC---CC-----cccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGST------KK---GM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~------~~---g~-----~~~~v~~advvv~~~~~~  216 (224)
                      .++|||+|..|...+.++.. .++    .+++.++++++.-+..      ..   .+     ..+++.+|||||-+-+..
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~-~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~   79 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALA-LGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPS   79 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence            37999999999988777665 443    8999988776544421      11   11     578999999999887763

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07574 formate dehydrogenase; Provisional

Probab=89.54  E-value=0.76  Score=43.07  Aligned_cols=62  Identities=13%  Similarity=0.128  Sum_probs=42.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhh---ccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGS---TKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~---~~~g~~~~~v~~advvv~~~~  214 (224)
                      .-++|+|||.|.+|+.-++.+.. +.  +..|+|+....+...+   ....-..+.+.++|||+....
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~-fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lP  257 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKP-FDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCP  257 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCC
Confidence            45789999999999999888775 44  3889998643322211   111124566789999998764

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=89.39  E-value=0.54  Score=41.15  Aligned_cols=61  Identities=13%  Similarity=0.059  Sum_probs=44.3

Q ss_pred             EEEEec-CHhHHHHHHHHHHhC--C---cEEEeCCcchHHhhhhc------cC-C--C-----cccccccCcEEEEeccc
Q psy13395        156 LAIMGS-GAQAYIHAKAFHASL--K---LKKYNRGLTEGTVTGST------KK-G--M-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       156 l~iiGa-G~QA~~hl~a~~~v~--~---i~v~~R~~~~a~~~a~~------~~-g--~-----~~~~v~~advvv~~~~~  215 (224)
                      ++|||+ |..+..-+..+...-  .   +.++++++++++..+..      .. .  +     ..+++.+||+||.+.+.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            589999 999988888776544  2   38999998887665431      11 1  1     26889999999998776


Q ss_pred             c
Q psy13395        216 Q  216 (224)
Q Consensus       216 ~  216 (224)
                      .
T Consensus        81 ~   81 (263)
T cd00650          81 G   81 (263)
T ss_pred             C
Confidence            4

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PLN02928 oxidoreductase family protein

Probab=89.14  E-value=0.83  Score=42.04  Aligned_cols=62  Identities=18%  Similarity=0.036  Sum_probs=42.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhh------------hhc--cCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVT------------GST--KKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~------------a~~--~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+.-.+.+.. +.  +.+|+|+.......            ...  ...-..+.+.+||||+....
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~a-fG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lP  235 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRP-FGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCT  235 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhh-CCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCC
Confidence            56899999999999999888764 44  48888874332111            000  11124677789999998764

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=89.06  E-value=0.7  Score=39.09  Aligned_cols=64  Identities=11%  Similarity=0.066  Sum_probs=43.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCC-------------------cchHHhhhhccC-------------C
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRG-------------------LTEGTVTGSTKK-------------G  197 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~-------------------~~~a~~~a~~~~-------------g  197 (224)
                      ...+++|+|+|..|..-++.+...-  .+.+++++                   ..|+++++++..             .
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~   99 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER   99 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence            5678999999999999999887754  24777766                   345555554211             1


Q ss_pred             Cc----ccccccCcEEEEeccc
Q psy13395        198 MA----TEDVITAKLIYDKYQA  215 (224)
Q Consensus       198 ~~----~~~v~~advvv~~~~~  215 (224)
                      +.    .+.+.++|+||.++..
T Consensus       100 i~~~~~~~~~~~~D~Vi~~~d~  121 (202)
T TIGR02356       100 VTAENLELLINNVDLVLDCTDN  121 (202)
T ss_pred             CCHHHHHHHHhCCCEEEECCCC
Confidence            11    2346789999998754

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK10206 putative oxidoreductase; Provisional

Probab=88.97  E-value=0.58  Score=42.70  Aligned_cols=61  Identities=15%  Similarity=0.170  Sum_probs=40.4

Q ss_pred             cEEEEEecCHhH-HHHHHHHHHhCC---c-EEEeCCcchHHhhhhccCCC----cccccc---cCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQA-YIHAKAFHASLK---L-KKYNRGLTEGTVTGSTKKGM----ATEDVI---TAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA-~~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~g~----~~~~v~---~advvv~~~~~  215 (224)
                      -+++|||+|..+ +.|+.++....+   + -|++++++++ +++++..+.    ..+++-   +-|+|+-+|-.
T Consensus         2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~   74 (344)
T PRK10206          2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHA   74 (344)
T ss_pred             eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence            479999999977 578987755433   3 8999998654 566543222    233332   46888887754

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=88.97  E-value=0.97  Score=41.17  Aligned_cols=62  Identities=11%  Similarity=0.045  Sum_probs=42.2

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhh------ccCC--------CcccccccCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGS------TKKG--------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~------~~~g--------~~~~~v~~advvv~~~~~  215 (224)
                      ..+++|||+|.++..-...+. ...   +.+++++++.++..+-      ...+        -..+++.+||+||.+-+.
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~aDiVI~tag~   84 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAGSDVVIVTAGL   84 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCCCCEEEECCCC
Confidence            468999999999876655433 233   4999999986532221      1111        145899999999997765

>PRK08818 prephenate dehydrogenase; Provisional

Probab=88.74  E-value=0.89  Score=42.43  Aligned_cols=55  Identities=16%  Similarity=0.094  Sum_probs=39.2

Q ss_pred             CcEEEEEec-CHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395        153 DLVLAIMGS-GAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGa-G~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..+++|||. |.+|.+-.+++......  ..|+|..+.        ..-..+.+.++|+||-++--
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~--------~~~~~~~v~~aDlVilavPv   61 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG--------SLDPATLLQRADVLIFSAPI   61 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc--------cCCHHHHhcCCCEEEEeCCH
Confidence            568999999 99999999999976544  555553111        11134567899999988743

>PRK06436 glycerate dehydrogenase; Provisional

Probab=88.67  E-value=0.84  Score=41.32  Aligned_cols=61  Identities=13%  Similarity=0.095  Sum_probs=41.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      .-++++|||.|.+|+.-.+.+. .+.  +.+|+|+.... .+ .....-..+.+.++|+|+.....
T Consensus       121 ~gktvgIiG~G~IG~~vA~~l~-afG~~V~~~~r~~~~~-~~-~~~~~~l~ell~~aDiv~~~lp~  183 (303)
T PRK06436        121 YNKSLGILGYGGIGRRVALLAK-AFGMNIYAYTRSYVND-GI-SSIYMEPEDIMKKSDFVLISLPL  183 (303)
T ss_pred             CCCEEEEECcCHHHHHHHHHHH-HCCCEEEEECCCCccc-Cc-ccccCCHHHHHhhCCEEEECCCC
Confidence            5799999999999999988654 454  48999875321 11 11011245556799999986553

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=88.62  E-value=1.3  Score=37.32  Aligned_cols=61  Identities=10%  Similarity=0.171  Sum_probs=44.0

Q ss_pred             EEEEec-CHhHHHHHHHHHHhCC--cEEEeCCcch--HHhhhhc-----cCCC-----cccccccCcEEEEeccccc
Q psy13395        156 LAIMGS-GAQAYIHAKAFHASLK--LKKYNRGLTE--GTVTGST-----KKGM-----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       156 l~iiGa-G~QA~~hl~a~~~v~~--i~v~~R~~~~--a~~~a~~-----~~g~-----~~~~v~~advvv~~~~~~~  217 (224)
                      ++|+|+ |.||+.-++++.. ..  +++..|++.+  ++.|...     ...+     ..+++.++|.|+..+...|
T Consensus         1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred             CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence            689995 9999999999999 43  3888888743  4444431     0111     5778899999999998653

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02712 arogenate dehydrogenase

Probab=88.58  E-value=0.93  Score=45.41  Aligned_cols=61  Identities=18%  Similarity=0.155  Sum_probs=42.6

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccc-c-ccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATED-V-ITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~-v-~~advvv~~~~~~  216 (224)
                      ..+++|||+|.+|.+..+++...- .+.+|+|+... + .+.. .|+    ..++ + .++||||-++..+
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~-~A~~-~Gv~~~~d~~e~~~~~aDvViLavP~~  119 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-L-AARS-LGVSFFLDPHDLCERHPDVILLCTSII  119 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-H-HHHH-cCCEEeCCHHHHhhcCCCEEEEcCCHH
Confidence            468999999999999999998753 35889998543 2 2322 233    2222 3 3699999988654

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.44  E-value=0.8  Score=41.63  Aligned_cols=55  Identities=9%  Similarity=-0.016  Sum_probs=41.7

Q ss_pred             CCcEEEEEecC-HhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSG-AQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG-~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      .-++++|||.| .+|+-....+..-- .+.+|++...           -..+.+++|||||++.+..+
T Consensus       158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~-----------~l~e~~~~ADIVIsavg~~~  214 (301)
T PRK14194        158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST-----------DAKALCRQADIVVAAVGRPR  214 (301)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC-----------CHHHHHhcCCEEEEecCChh
Confidence            68999999996 99988888876543 2499977654           24556778999999887643

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=88.42  E-value=0.98  Score=39.77  Aligned_cols=61  Identities=15%  Similarity=0.098  Sum_probs=43.8

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc-----C-C--------C-cc-cccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK-----K-G--------M-AT-EDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~-----~-g--------~-~~-~~v~~advvv~~~~~~  216 (224)
                      +++|||+|.+|......+...- .+.+|.| .++.+++.+..     . +        . .. +.+..+|+||-++.++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~   79 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY   79 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence            5899999999999999988764 3589999 77777665421     0 0        0 12 2347899999988765

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=88.38  E-value=0.53  Score=45.29  Aligned_cols=63  Identities=21%  Similarity=0.177  Sum_probs=37.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcc-------hHHhhhhc--cCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLT-------EGTVTGST--KKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~-------~a~~~a~~--~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++|+|||+|.||+.|..-+.. ..+ .+++-.+.       ..+...+.  ..+-..+++..||+|+..+..
T Consensus        35 kgKtIaIIGyGSqG~AqAlNLrd-SGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPD  107 (487)
T PRK05225         35 KGKKIVIVGCGAQGLNQGLNMRD-SGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPD  107 (487)
T ss_pred             CCCEEEEEccCHHHHHHhCCCcc-ccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCCh
Confidence            46899999999999966655322 223 33332221       11111111  112268889999999987653

>PLN02602 lactate dehydrogenase

Probab=88.09  E-value=1.1  Score=41.57  Aligned_cols=61  Identities=10%  Similarity=-0.067  Sum_probs=44.7

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhc------cCC-------CcccccccCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGST------KKG-------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~------~~g-------~~~~~v~~advvv~~~~~  215 (224)
                      ..++|||+|..|..-+..+.. .++    .++++++++++..+..      ..+       -..+++.+|||||-+-+.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~-~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~  115 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILT-QDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGA  115 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCCC
Confidence            699999999999888876653 343    9999988877555431      111       145778999999988665

>PLN02306 hydroxypyruvate reductase

Probab=88.05  E-value=1.1  Score=42.09  Aligned_cols=63  Identities=14%  Similarity=0.118  Sum_probs=42.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchH-Hhhhhc----------------cCCCcccccccCcEEEEe
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEG-TVTGST----------------KKGMATEDVITAKLIYDK  212 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a-~~~a~~----------------~~g~~~~~v~~advvv~~  212 (224)
                      .-++++|||.|.+|+.-.+.+...|..  ..|+|++... +.+...                ...-..+.+.+||||+..
T Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh  243 (386)
T PLN02306        164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLH  243 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEe
Confidence            568999999999999999887655654  7788876422 211110                001145667899999986


Q ss_pred             cc
Q psy13395        213 YQ  214 (224)
Q Consensus       213 ~~  214 (224)
                      ..
T Consensus       244 ~P  245 (386)
T PLN02306        244 PV  245 (386)
T ss_pred             CC
Confidence            43

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=87.99  E-value=1.9  Score=36.41  Aligned_cols=61  Identities=15%  Similarity=0.073  Sum_probs=43.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccC--CCcccccc--cCcEEEEe
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKK--GMATEDVI--TAKLIYDK  212 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~--g~~~~~v~--~advvv~~  212 (224)
                      ..++++|+|.|.+|+.-.+.+...-- +.++++++++.+.+++...  .+..+++.  ++||++.+
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~   92 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPC   92 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEec
Confidence            46899999999999999998877533 4889999988887766421  11222222  68999844

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=87.82  E-value=1.7  Score=33.87  Aligned_cols=61  Identities=21%  Similarity=0.241  Sum_probs=39.4

Q ss_pred             EEEEEec-CHhHHHHHHHHHHhCCc---EEEeCCcc-h-HHhhhh----ccCCC-----cccccccCcEEEEeccc
Q psy13395        155 VLAIMGS-GAQAYIHAKAFHASLKL---KKYNRGLT-E-GTVTGS----TKKGM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGa-G~QA~~hl~a~~~v~~i---~v~~R~~~-~-a~~~a~----~~~g~-----~~~~v~~advvv~~~~~  215 (224)
                      +++|+|+ |.+|+.-++++..-...   -+++|.++ . .+...+    ...|+     ..+.+.++||||..|..
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~p   77 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTNP   77 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-H
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCCh
Confidence            6899999 99999999999985554   66667662 1 122221    11232     45556679999998854

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=87.15  E-value=1.3  Score=40.38  Aligned_cols=62  Identities=11%  Similarity=0.041  Sum_probs=41.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchH--HhhhhccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEG--TVTGSTKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a--~~~a~~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+.-.+.+...|..  ..|+|.....  +.+.-+ ..-..+.+.+||+|+....
T Consensus       144 ~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~-~~~l~ell~~sDvv~lh~p  209 (323)
T PRK15409        144 HHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNAR-YCDLDTLLQESDFVCIILP  209 (323)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcE-ecCHHHHHHhCCEEEEeCC
Confidence            568999999999999999887634554  6677764221  111111 1124566789999987654

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=87.11  E-value=1.1  Score=40.26  Aligned_cols=60  Identities=17%  Similarity=0.064  Sum_probs=43.8

Q ss_pred             EEEEecCHhHHHHHHHHHHhC--C-cEEEeCCcchHHhhhhccC------C-------CcccccccCcEEEEeccc
Q psy13395        156 LAIMGSGAQAYIHAKAFHASL--K-LKKYNRGLTEGTVTGSTKK------G-------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       156 l~iiGaG~QA~~hl~a~~~v~--~-i~v~~R~~~~a~~~a~~~~------g-------~~~~~v~~advvv~~~~~  215 (224)
                      ++|||+|..|..-+..+...-  . +.++++++++++..+....      .       -..+++.+|||||.+-+.
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~   76 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGA   76 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCC
Confidence            579999999988887665432  2 3999999998877765210      0       135799999999998765

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=87.08  E-value=1.6  Score=35.04  Aligned_cols=59  Identities=10%  Similarity=0.111  Sum_probs=44.2

Q ss_pred             EEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc----cCCC-----cccccccCcEEEEeccc
Q psy13395        156 LAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST----KKGM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       156 l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~----~~g~-----~~~~v~~advvv~~~~~  215 (224)
                      |+|+|+ |..|+.-++.+..-- ++++..|++++.+. ...    ...+     ..+++.++|+||...+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            689995 999999999988765 24999999998887 211    1111     46677799999998763

...

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.96  E-value=1.9  Score=38.69  Aligned_cols=52  Identities=13%  Similarity=0.009  Sum_probs=37.9

Q ss_pred             CCcEEEEEecCH-hHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGA-QAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~-QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||+|. .|+.-..++..... +.+++|.   .+.+        .+.+.+|||||.+|+
T Consensus       158 ~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---t~~L--------~~~~~~aDIvI~AtG  211 (283)
T PRK14192        158 AGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---TQNL--------PELVKQADIIVGAVG  211 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---chhH--------HHHhccCCEEEEccC
Confidence            678999999998 88888887765433 3777762   2222        234478999999996

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=86.83  E-value=0.92  Score=38.00  Aligned_cols=60  Identities=13%  Similarity=0.147  Sum_probs=40.2

Q ss_pred             EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC-----CC------------------cccccccCcEEE
Q psy13395        155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK-----GM------------------ATEDVITAKLIY  210 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~-----g~------------------~~~~v~~advvv  210 (224)
                      +++|||.|-.|.-...+|... +++..|+.++++.+.+.+...     |+                  ..+++.++|+++
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~   81 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVF   81 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEE
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEE
Confidence            689999999999999999888 456888999998888876211     11                  255588999998


Q ss_pred             Eecc
Q psy13395        211 DKYQ  214 (224)
Q Consensus       211 ~~~~  214 (224)
                      -+-.
T Consensus        82 I~Vp   85 (185)
T PF03721_consen   82 ICVP   85 (185)
T ss_dssp             E---
T ss_pred             EecC
Confidence            7654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=86.64  E-value=1.5  Score=40.94  Aligned_cols=65  Identities=14%  Similarity=0.156  Sum_probs=48.1

Q ss_pred             EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc-----CC--C-----cccccccCcEEEEeccccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK-----KG--M-----ATEDVITAKLIYDKYQAQHSN  219 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~-----~g--~-----~~~~v~~advvv~~~~~~~~~  219 (224)
                      ++.|+|+|..|+.-.+.+... .++.++++++++.+.+.+..     .|  .     ....+.++|.||.++.....|
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n   79 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETN   79 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHH
Confidence            689999999999999988764 34599999999988876521     11  1     223478999999998765443

>PRK06270 homoserine dehydrogenase; Provisional

Probab=86.55  E-value=1.6  Score=40.04  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=19.8

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS  175 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v  175 (224)
                      -+++|+|+|.+|+.+++.+...
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHh
Confidence            4799999999999999998765

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=86.52  E-value=2.3  Score=38.85  Aligned_cols=64  Identities=6%  Similarity=0.069  Sum_probs=41.5

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccC-C--C-c-c----c---cc---ccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKK-G--M-A-T----E---DV---ITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~-g--~-~-~----~---~v---~~advvv~~~~~~  216 (224)
                      .+++|+|+|++|...+.++...-.  +.+.++++++.+...+... .  . . .    +   ++   ..+|+||.+++.+
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~  249 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSP  249 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence            399999999999998666555432  3666888877654433110 0  0 1 1    1   11   4699999999965


Q ss_pred             c
Q psy13395        217 H  217 (224)
Q Consensus       217 ~  217 (224)
                      +
T Consensus       250 ~  250 (350)
T COG1063         250 P  250 (350)
T ss_pred             H
Confidence            3

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=86.35  E-value=1.3  Score=42.95  Aligned_cols=62  Identities=19%  Similarity=0.158  Sum_probs=41.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcc--hHHhhhhccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLT--EGTVTGSTKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~--~a~~~a~~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+.-.+.+.. +.  +..|+|...  .++.+.-....-..+.+.++|+|+....
T Consensus       137 ~gktvgIiG~G~IG~~vA~~l~~-fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lP  202 (525)
T TIGR01327       137 YGKTLGVIGLGRIGSIVAKRAKA-FGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTP  202 (525)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccC
Confidence            45799999999999999988765 44  488888532  2222211111124566779999997654

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>KOG1370|consensus

Probab=86.10  E-value=1.1  Score=41.24  Aligned_cols=63  Identities=11%  Similarity=0.064  Sum_probs=49.5

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~  216 (224)
                      .+.++|.|.|-.++-..+++..... +|+--..+...+|-..++|+    ..|+++++||+||+|+-.
T Consensus       214 GKv~Vv~GYGdVGKgCaqaLkg~g~-~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTGc~  280 (434)
T KOG1370|consen  214 GKVAVVCGYGDVGKGCAQALKGFGA-RVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTGCK  280 (434)
T ss_pred             ccEEEEeccCccchhHHHHHhhcCc-EEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccCCc
Confidence            5789999999999999999877554 44444555666676667776    688899999999999853

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=85.83  E-value=1  Score=40.17  Aligned_cols=60  Identities=12%  Similarity=0.029  Sum_probs=40.6

Q ss_pred             EEEEecCHhHHHHHHHHHHh--CCcEEEeCCcchHHhhhh----c--cCC--------CcccccccCcEEEEeccc
Q psy13395        156 LAIMGSGAQAYIHAKAFHAS--LKLKKYNRGLTEGTVTGS----T--KKG--------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       156 l~iiGaG~QA~~hl~a~~~v--~~i~v~~R~~~~a~~~a~----~--~~g--------~~~~~v~~advvv~~~~~  215 (224)
                      ++|||+|.+|......+...  ..+.+++++++.++..+-    .  ..+        -..+++.+||+||.+-+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCC
Confidence            58999999998877666532  245899999876543321    1  011        135789999999987653

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK10637 cysG siroheme synthase; Provisional

Probab=85.51  E-value=2.3  Score=40.55  Aligned_cols=66  Identities=14%  Similarity=0.029  Sum_probs=49.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcc-hHHhhhhc------cCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLT-EGTVTGST------KKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~-~a~~~a~~------~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|..|..-++.|...-. +.|+++... ..+.+++.      ...+..+++.++++||.+|....
T Consensus        11 ~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~   84 (457)
T PRK10637         11 RDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA   84 (457)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH
Confidence            67899999999999999999988554 488887653 23444431      12457889999999999997643

>PRK06349 homoserine dehydrogenase; Provisional

Probab=85.50  E-value=1.5  Score=41.34  Aligned_cols=63  Identities=11%  Similarity=0.163  Sum_probs=41.6

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC---------Cc---EEEeCCcchHHhhhhccCCC--cccccc---cCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL---------KL---KKYNRGLTEGTVTGSTKKGM--ATEDVI---TAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~---------~i---~v~~R~~~~a~~~a~~~~g~--~~~~v~---~advvv~~~~~  215 (224)
                      .-+++|+|+|.+|..+++.+....         .+   .|++|++++++.+.....-+  ..+++.   +.||||..|+.
T Consensus         3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~   82 (426)
T PRK06349          3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGG   82 (426)
T ss_pred             eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCC
Confidence            458999999999999988875532         22   88999988765432110001  233333   57999988754

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=85.48  E-value=1.4  Score=42.86  Aligned_cols=63  Identities=10%  Similarity=-0.041  Sum_probs=47.7

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC------CC-----cccccccCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK------GM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~------g~-----~~~~v~~advvv~~~~~  215 (224)
                      ..++.|+|+|..|+.-.+.+.+.. ++.++++++++.+.+.+...      +.     ....+.+||.|+.++..
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~  491 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN  491 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence            368899999999999999987753 45999999999888865211      11     34567799988777654

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=85.39  E-value=1.9  Score=39.46  Aligned_cols=65  Identities=12%  Similarity=0.042  Sum_probs=44.0

Q ss_pred             CCcEEEEEec-CHhHHHHHHHHHHh--CC------cEEEeCCc--chHHhhhh----cc----CCC-----cccccccCc
Q psy13395        152 KDLVLAIMGS-GAQAYIHAKAFHAS--LK------LKKYNRGL--TEGTVTGS----TK----KGM-----ATEDVITAK  207 (224)
Q Consensus       152 ~~~~l~iiGa-G~QA~~hl~a~~~v--~~------i~v~~R~~--~~a~~~a~----~~----~g~-----~~~~v~~ad  207 (224)
                      ++-+++|||+ |..|..-+..+..-  +.      +.++++.+  ++++..+.    ..    .++     ..+++.+||
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD   81 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVD   81 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCC
Confidence            6889999998 99998877766532  22      38888854  33443332    11    011     579999999


Q ss_pred             EEEEecccc
Q psy13395        208 LIYDKYQAQ  216 (224)
Q Consensus       208 vvv~~~~~~  216 (224)
                      |||.+-+..
T Consensus        82 vVVitAG~~   90 (323)
T TIGR01759        82 AALLVGAFP   90 (323)
T ss_pred             EEEEeCCCC
Confidence            999877653

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=85.27  E-value=1.2  Score=44.78  Aligned_cols=62  Identities=10%  Similarity=0.017  Sum_probs=42.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHH--hCCcEEEeCCcchHHhhhh--------c-cCC-----------------Cccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHA--SLKLKKYNRGLTEGTVTGS--------T-KKG-----------------MATEDV  203 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~--v~~i~v~~R~~~~a~~~a~--------~-~~g-----------------~~~~~v  203 (224)
                      +-++|+|||+|.+|..-...+..  =+++.+|+++++..+.-.+        . ..|                 ...+++
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  382 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGF  382 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHh
Confidence            34689999999999988877653  3556999999875433211        0 011                 134678


Q ss_pred             ccCcEEEEec
Q psy13395        204 ITAKLIYDKY  213 (224)
Q Consensus       204 ~~advvv~~~  213 (224)
                      .+||+||.+-
T Consensus       383 ~~adlViEav  392 (699)
T TIGR02440       383 KDVDIVIEAV  392 (699)
T ss_pred             ccCCEEEEec
Confidence            8999999873

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=84.98  E-value=1.2  Score=44.89  Aligned_cols=62  Identities=8%  Similarity=0.028  Sum_probs=43.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhh-------c--cCC-----------------Ccccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGS-------T--KKG-----------------MATEDVI  204 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~-------~--~~g-----------------~~~~~v~  204 (224)
                      +.++++|||+|.+|..-...++.. +++.+|+++++..++-.+       .  ..|                 ...+++.
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  391 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFD  391 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhc
Confidence            567899999999998888776654 234999999887543211       0  011                 1346789


Q ss_pred             cCcEEEEec
Q psy13395        205 TAKLIYDKY  213 (224)
Q Consensus       205 ~advvv~~~  213 (224)
                      ++|+||.+-
T Consensus       392 ~aDlViEav  400 (714)
T TIGR02437       392 NVDIVVEAV  400 (714)
T ss_pred             CCCEEEEcC
Confidence            999999873

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=84.69  E-value=1.7  Score=39.67  Aligned_cols=59  Identities=15%  Similarity=0.056  Sum_probs=41.9

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhcc------CCC--------cccccccCcEEEEecc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGSTK------KGM--------ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~~------~g~--------~~~~v~~advvv~~~~  214 (224)
                      .|+|||+|..|...+.++ ....+    .+++..++.++-.+...      .+.        ..+++.+|||||-+-+
T Consensus         2 KVaviGaG~VG~s~a~~l-~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG   78 (313)
T COG0039           2 KVAVIGAGNVGSSLAFLL-LLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAG   78 (313)
T ss_pred             eEEEECCChHHHHHHHHH-hcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCC
Confidence            689999999999998888 44443    89999977665444311      111        2789999999876543

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=84.36  E-value=4.4  Score=36.43  Aligned_cols=63  Identities=16%  Similarity=0.244  Sum_probs=42.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~  215 (224)
                      ...+|+|+|+|..|...++.+....   .+.+.++++++.+.+.+.....    ..+. ..+|+||..++.
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~-~g~d~viD~~G~  232 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPED-LAVDHAFECVGG  232 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhc-cCCcEEEECCCC
Confidence            4679999999999999888777643   2467788887765443211001    1111 258999999984

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK05442 malate dehydrogenase; Provisional

Probab=84.26  E-value=2.2  Score=38.99  Aligned_cols=64  Identities=13%  Similarity=0.001  Sum_probs=42.4

Q ss_pred             CCcEEEEEec-CHhHHHHHHHHHH--hCC------cEEEeCCc--chHHhhh----hcc----CC-----CcccccccCc
Q psy13395        152 KDLVLAIMGS-GAQAYIHAKAFHA--SLK------LKKYNRGL--TEGTVTG----STK----KG-----MATEDVITAK  207 (224)
Q Consensus       152 ~~~~l~iiGa-G~QA~~hl~a~~~--v~~------i~v~~R~~--~~a~~~a----~~~----~g-----~~~~~v~~ad  207 (224)
                      ++.+++|||+ |..|..-+..+..  ++.      +.+++.++  ++++..+    +..    ..     =..+++.+||
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daD   82 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDAD   82 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCC
Confidence            6889999998 9999887665443  222      38888844  3343333    211    01     1569999999


Q ss_pred             EEEEeccc
Q psy13395        208 LIYDKYQA  215 (224)
Q Consensus       208 vvv~~~~~  215 (224)
                      |||.+-+.
T Consensus        83 iVVitaG~   90 (326)
T PRK05442         83 VALLVGAR   90 (326)
T ss_pred             EEEEeCCC
Confidence            99987664

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=83.85  E-value=2.1  Score=40.16  Aligned_cols=61  Identities=8%  Similarity=-0.021  Sum_probs=40.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++|+|||.|.+|+.-.+.+.. +..  .+|++.....+. . ....-..+.+.++|||+..+--
T Consensus       115 ~gktvGIIG~G~IG~~va~~l~a-~G~~V~~~Dp~~~~~~~-~-~~~~~l~ell~~aDiV~lh~Pl  177 (381)
T PRK00257        115 AERTYGVVGAGHVGGRLVRVLRG-LGWKVLVCDPPRQEAEG-D-GDFVSLERILEECDVISLHTPL  177 (381)
T ss_pred             CcCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCccccccc-C-ccccCHHHHHhhCCEEEEeCcC
Confidence            57899999999999999888765 554  788875432210 0 0011134555799999976543

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=83.85  E-value=1.6  Score=41.14  Aligned_cols=61  Identities=13%  Similarity=0.061  Sum_probs=40.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+.-.+.+.. |..  ..|+|++........ ...-..+.+.+||+|+....
T Consensus       150 ~gktvGIiG~G~IG~~vA~~~~~-fGm~V~~~d~~~~~~~~~~~-~~~~l~ell~~sDiVslh~P  212 (409)
T PRK11790        150 RGKTLGIVGYGHIGTQLSVLAES-LGMRVYFYDIEDKLPLGNAR-QVGSLEELLAQSDVVSLHVP  212 (409)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCCcccccCCce-ecCCHHHHHhhCCEEEEcCC
Confidence            56799999999999999988765 543  778876432111111 11124666789999987654

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=83.59  E-value=2.1  Score=42.47  Aligned_cols=67  Identities=10%  Similarity=0.088  Sum_probs=51.3

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC------CC-----cccccccCcEEEEeccccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK------GM-----ATEDVITAKLIYDKYQAQHSN  219 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~------g~-----~~~~v~~advvv~~~~~~~~~  219 (224)
                      ..++.|+|+|..|+.-.+.+.+.. ++.+.+.++++.+.+.+...      +.     ..+-+.+||.||.++.....|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n  478 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS  478 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence            578999999999999999887743 45899999999888865211      11     356778999999998765443

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=83.58  E-value=1.5  Score=44.27  Aligned_cols=62  Identities=8%  Similarity=-0.004  Sum_probs=42.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhh--------h-ccCCC-----------------cccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTG--------S-TKKGM-----------------ATEDVI  204 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a--------~-~~~g~-----------------~~~~v~  204 (224)
                      +-++++|||+|.+|.--...++.. +++.+|+++++..+.-.        . ...|.                 ..+++.
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  391 (715)
T PRK11730        312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFE  391 (715)
T ss_pred             ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhc
Confidence            347899999999998887776554 23499999988753211        1 00111                 346788


Q ss_pred             cCcEEEEec
Q psy13395        205 TAKLIYDKY  213 (224)
Q Consensus       205 ~advvv~~~  213 (224)
                      ++|+||.+-
T Consensus       392 ~aDlViEav  400 (715)
T PRK11730        392 RVDVVVEAV  400 (715)
T ss_pred             CCCEEEecc
Confidence            999999874

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=83.45  E-value=2.3  Score=40.76  Aligned_cols=64  Identities=11%  Similarity=-0.023  Sum_probs=47.7

Q ss_pred             CCcEEEEEec-CHhHHHHHHHHHHh--C----Cc----EEEeCCcchHHhhhhc----c----CCC-----cccccccCc
Q psy13395        152 KDLVLAIMGS-GAQAYIHAKAFHAS--L----KL----KKYNRGLTEGTVTGST----K----KGM-----ATEDVITAK  207 (224)
Q Consensus       152 ~~~~l~iiGa-G~QA~~hl~a~~~v--~----~i----~v~~R~~~~a~~~a~~----~----~g~-----~~~~v~~ad  207 (224)
                      ++.+|+|||+ |..|..-+..+..-  +    ++    .+.++++++++..+-.    .    ..+     ..+++.+||
T Consensus        99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaD  178 (444)
T PLN00112         99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAE  178 (444)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCC
Confidence            6899999999 99999888876643  1    33    7779999887665531    1    011     578999999


Q ss_pred             EEEEeccc
Q psy13395        208 LIYDKYQA  215 (224)
Q Consensus       208 vvv~~~~~  215 (224)
                      |||-+-+.
T Consensus       179 iVVitAG~  186 (444)
T PLN00112        179 WALLIGAK  186 (444)
T ss_pred             EEEECCCC
Confidence            99988765

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=83.43  E-value=2.3  Score=38.36  Aligned_cols=55  Identities=7%  Similarity=-0.026  Sum_probs=39.8

Q ss_pred             CCcEEEEEecCH-hHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGA-QAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~-QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|. .|+--...+....- +.+.++...           -..+.+.+|||||++++..|
T Consensus       157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~-----------~l~~~~~~ADIVIsAvg~p~  213 (286)
T PRK14175        157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK-----------DMASYLKDADVIVSAVGKPG  213 (286)
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch-----------hHHHHHhhCCEEEECCCCCc
Confidence            689999999988 88888887765432 344444221           13456889999999998865

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=83.23  E-value=2.1  Score=38.74  Aligned_cols=60  Identities=18%  Similarity=0.094  Sum_probs=40.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++|+|||.|.+|+.-.+.+.. |.  +..|+|+....+.  .-...-..+-+.+||+|+...-
T Consensus       144 ~gktvGIiG~G~IG~~vA~~~~~-fgm~V~~~d~~~~~~~~--~~~~~~l~ell~~sDvv~lh~P  205 (311)
T PRK08410        144 KGKKWGIIGLGTIGKRVAKIAQA-FGAKVVYYSTSGKNKNE--EYERVSLEELLKTSDIISIHAP  205 (311)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhh-cCCEEEEECCCcccccc--CceeecHHHHhhcCCEEEEeCC
Confidence            67899999999999999988754 55  3778876432111  0001114666789999987654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=83.21  E-value=1.7  Score=43.70  Aligned_cols=37  Identities=8%  Similarity=-0.084  Sum_probs=29.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchH
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEG  188 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a  188 (224)
                      +.++++|||+|.+|..-...++...  ++.+|+++++..
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l  346 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGI  346 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence            4688999999999999888877444  459999988754

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=83.19  E-value=2  Score=41.74  Aligned_cols=62  Identities=19%  Similarity=0.122  Sum_probs=42.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcch--HHhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTE--GTVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~--a~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+.-.+.+.. +.  +..|+|+...  ++.+.-+.. -..+.+.++|+|+.....
T Consensus       139 ~gktvgIiG~G~IG~~vA~~l~~-fG~~V~~~d~~~~~~~~~~~g~~~~-~l~ell~~aDiV~l~lP~  204 (526)
T PRK13581        139 YGKTLGIIGLGRIGSEVAKRAKA-FGMKVIAYDPYISPERAAQLGVELV-SLDELLARADFITLHTPL  204 (526)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCCCChhHHHhcCCEEE-cHHHHHhhCCEEEEccCC
Confidence            47799999999999999888765 44  4888886432  222111111 145667799999987654

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=83.14  E-value=2.3  Score=38.77  Aligned_cols=64  Identities=9%  Similarity=-0.035  Sum_probs=42.6

Q ss_pred             CcEEEEEec-CHhHHHHHHHHHH--hCC------cEEEeCCcc--hHHhhhhc----c----C-----CCcccccccCcE
Q psy13395        153 DLVLAIMGS-GAQAYIHAKAFHA--SLK------LKKYNRGLT--EGTVTGST----K----K-----GMATEDVITAKL  208 (224)
Q Consensus       153 ~~~l~iiGa-G~QA~~hl~a~~~--v~~------i~v~~R~~~--~a~~~a~~----~----~-----g~~~~~v~~adv  208 (224)
                      +.+|+|||+ |..|..-+..+..  ++.      +.+++...+  +++..+-.    .    .     +-..+++.+|||
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi   81 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW   81 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence            678999999 9999986665542  222      388888433  34443321    1    0     115789999999


Q ss_pred             EEEecccc
Q psy13395        209 IYDKYQAQ  216 (224)
Q Consensus       209 vv~~~~~~  216 (224)
                      ||.+-+..
T Consensus        82 vvitaG~~   89 (322)
T cd01338          82 ALLVGAKP   89 (322)
T ss_pred             EEEeCCCC
Confidence            99887763

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=82.66  E-value=1.9  Score=39.87  Aligned_cols=64  Identities=9%  Similarity=0.051  Sum_probs=44.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCC-------------------cchHHhhhhcc----CCC--------
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRG-------------------LTEGTVTGSTK----KGM--------  198 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~-------------------~~~a~~~a~~~----~g~--------  198 (224)
                      ...+|+|+|+|..|...++.+...--  +.+++++                   ..|++.++++.    ..+        
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~  213 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER  213 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence            46789999999999999998876542  4777776                   45677666531    111        


Q ss_pred             -c----ccccccCcEEEEeccc
Q psy13395        199 -A----TEDVITAKLIYDKYQA  215 (224)
Q Consensus       199 -~----~~~v~~advvv~~~~~  215 (224)
                       .    .+-+.++|+||.+|..
T Consensus       214 ~~~~~~~~~~~~~D~Vv~~~d~  235 (376)
T PRK08762        214 VTSDNVEALLQDVDVVVDGADN  235 (376)
T ss_pred             CChHHHHHHHhCCCEEEECCCC
Confidence             1    1235689999998764

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=82.57  E-value=2.3  Score=33.36  Aligned_cols=61  Identities=16%  Similarity=0.187  Sum_probs=43.1

Q ss_pred             EEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc------CC---------Cc--ccccccCcEEEEeccccc
Q psy13395        156 LAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK------KG---------MA--TEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       156 l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~------~g---------~~--~~~v~~advvv~~~~~~~  217 (224)
                      ++|+|+|.+|..-...|...- ++.+|.|.. +.+.+.+..      .+         ..  .+.....|+||-++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~   79 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ   79 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence            689999999999888887732 249999988 777765421      11         01  236778999999998764

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=82.30  E-value=2.2  Score=39.12  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=26.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGL  185 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~  185 (224)
                      ...+|+|||+|..|..-++.+...-  .+.+++++.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4568999999999999999887764  247777763

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=82.18  E-value=2.2  Score=42.11  Aligned_cols=67  Identities=12%  Similarity=0.153  Sum_probs=50.8

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC----C-------CcccccccCcEEEEeccccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK----G-------MATEDVITAKLIYDKYQAQHSN  219 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~----g-------~~~~~v~~advvv~~~~~~~~~  219 (224)
                      ..++.|+|.|..|+.-.+.+.... ++.+.++++++.+.+.+...    |       +..+.+.+||.||.++.....|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n  478 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDT  478 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHH
Confidence            368999999999999888887643 45999999999887754211    1       1456688999999998876544

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=81.86  E-value=3.4  Score=37.42  Aligned_cols=61  Identities=16%  Similarity=0.150  Sum_probs=46.2

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhc------cCC---------CcccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGST------KKG---------MATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~------~~g---------~~~~~v~~advvv~~~~~~  216 (224)
                      +++|+|+|.+|..-.-.+...-. +.+|.|++. +++|.+.      ..+         ...+....+|+||.++.+-
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~   78 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY   78 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc
Confidence            68999999999888888777764 389998886 7777762      112         1466677899999988663

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=81.73  E-value=2.2  Score=40.02  Aligned_cols=99  Identities=11%  Similarity=-0.001  Sum_probs=66.6

Q ss_pred             EEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcch
Q psy13395        109 TVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTE  187 (224)
Q Consensus       109 ~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~  187 (224)
                      +|.++|+.|   ..+.|..+=|+--|--.=.=++..|-     .-++++|.|.|-.++-....+...--. .||--+|  
T Consensus       173 ai~VNDs~t---K~~FDNrYGtgqS~~DgI~RaTn~li-----aGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDP--  242 (420)
T COG0499         173 AINVNDSVT---KSLFDNRYGTGQSLLDGILRATNVLL-----AGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDP--  242 (420)
T ss_pred             eEeecchhh---hcccccccccchhHHHHHHhhhceee-----cCceEEEecccccchHHHHHhhcCCCeEEEEecCc--
Confidence            445566554   34566666655443333333455543     357999999999999988877665543 7776665  


Q ss_pred             HHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395        188 GTVTGSTKKGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       188 a~~~a~~~~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      .+++...++|+    ..+++..+||+||+|+..+
T Consensus       243 I~AleA~MdGf~V~~m~~Aa~~gDifiT~TGnkd  276 (420)
T COG0499         243 IRALEAAMDGFRVMTMEEAAKTGDIFVTATGNKD  276 (420)
T ss_pred             hHHHHHhhcCcEEEEhHHhhhcCCEEEEccCCcC
Confidence            44555566676    6788999999999999754

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=81.42  E-value=3.3  Score=36.59  Aligned_cols=61  Identities=26%  Similarity=0.277  Sum_probs=37.6

Q ss_pred             EEEEEe-cCHhHHHHHHHHHHhCCc---EEEeCCc-ch-HHhhhh---c-cCCC----ccccc-ccCcEEEEeccc
Q psy13395        155 VLAIMG-SGAQAYIHAKAFHASLKL---KKYNRGL-TE-GTVTGS---T-KKGM----ATEDV-ITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiG-aG~QA~~hl~a~~~v~~i---~v~~R~~-~~-a~~~a~---~-~~g~----~~~~v-~~advvv~~~~~  215 (224)
                      +++|+| +|.+|+.+++.+...-.+   -+++|.. +. .+.+++   . ..|+    ..+++ ..+||||..|..
T Consensus         3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p   78 (266)
T TIGR00036         3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP   78 (266)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh
Confidence            799999 699999999998875443   6677542 22 112222   1 1232    12233 358999998754

>PRK15076 alpha-galactosidase; Provisional

Probab=81.41  E-value=2.7  Score=39.90  Aligned_cols=63  Identities=11%  Similarity=0.178  Sum_probs=41.8

Q ss_pred             cEEEEEecCHhHHH--HHHHHHHh--C---CcEEEeCCcchHH---hhhhc---cCCC---------cccccccCcEEEE
Q psy13395        154 LVLAIMGSGAQAYI--HAKAFHAS--L---KLKKYNRGLTEGT---VTGST---KKGM---------ATEDVITAKLIYD  211 (224)
Q Consensus       154 ~~l~iiGaG~QA~~--hl~a~~~v--~---~i~v~~R~~~~a~---~~a~~---~~g~---------~~~~v~~advvv~  211 (224)
                      .+++|||+|.++..  +++.+...  +   .+.++++++++++   +++++   ..+.         ..+++.+||+||.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            47999999998644  33355422  2   2399999998865   33221   1121         2688999999999


Q ss_pred             ecccc
Q psy13395        212 KYQAQ  216 (224)
Q Consensus       212 ~~~~~  216 (224)
                      +-+..
T Consensus        82 ti~vg   86 (431)
T PRK15076         82 AIQVG   86 (431)
T ss_pred             eeeeC
Confidence            98874

>PTZ00325 malate dehydrogenase; Provisional

Probab=81.40  E-value=3.4  Score=37.74  Aligned_cols=64  Identities=16%  Similarity=0.139  Sum_probs=43.0

Q ss_pred             CCcEEEEEec-CHhHHHHHHHHHHhCC----cEEEeCCcchHHhh--hhcc-----CCC-----cccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGS-GAQAYIHAKAFHASLK----LKKYNRGLTEGTVT--GSTK-----KGM-----ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGa-G~QA~~hl~a~~~v~~----i~v~~R~~~~a~~~--a~~~-----~g~-----~~~~v~~advvv~~~~  214 (224)
                      .-++++|+|+ |..|..-...+. ..+    +.++++....++++  .+..     .+.     ..+++.++|+||.+-+
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~-~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLK-QNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHh-cCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            5679999999 999998887765 223    38888844333222  1110     111     1689999999999887


Q ss_pred             cc
Q psy13395        215 AQ  216 (224)
Q Consensus       215 ~~  216 (224)
                      ..
T Consensus        86 ~~   87 (321)
T PTZ00325         86 VP   87 (321)
T ss_pred             CC
Confidence            64

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.31  E-value=4.2  Score=38.93  Aligned_cols=63  Identities=10%  Similarity=0.054  Sum_probs=44.2

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC-------cccccccCcEEEEeccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM-------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~-------~~~~v~~advvv~~~~~~~  217 (224)
                      .++++|+|.|..|...++.+...-. +.+|++.++..+.+.+  .|+       ..+.+.++|+||.+.+--.
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~--~g~~~~~~~~~~~~l~~~D~VV~SpGi~~   82 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAE--RGVATVSTSDAVQQIADYALVVTSPGFRP   82 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHh--CCCEEEcCcchHhHhhcCCEEEECCCCCC
Confidence            4689999999999999987665432 3888877655444332  232       3355678999999987643

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=81.05  E-value=4  Score=36.83  Aligned_cols=62  Identities=8%  Similarity=-0.029  Sum_probs=43.1

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh--CCcEEEeCCcchHHhhh----hc-----cCC-----CcccccccCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS--LKLKKYNRGLTEGTVTG----ST-----KKG-----MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v--~~i~v~~R~~~~a~~~a----~~-----~~g-----~~~~~v~~advvv~~~~~  215 (224)
                      .+++|||+|.+|......+...  .++.++++..+.++..+    +.     ..+     -..+++.+||+||-+-+.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag~   79 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAGL   79 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCCC
Confidence            3689999999999998887763  24688888766544222    10     001     145678999999998775

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=80.85  E-value=2.9  Score=39.19  Aligned_cols=51  Identities=10%  Similarity=0.080  Sum_probs=38.5

Q ss_pred             hhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhh
Q psy13395        143 KHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGS  193 (224)
Q Consensus       143 ~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~  193 (224)
                      ++.+|....++-++++||+|.+++-.+.-+.+.-.+   -|-+|+.+.+++-.+
T Consensus         7 ~L~aRaa~G~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~   60 (438)
T COG4091           7 DLAARAAEGKPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYD   60 (438)
T ss_pred             HHHHHhccCCceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHH
Confidence            344444333799999999999999988887766555   777899988866655

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=80.82  E-value=3.1  Score=35.33  Aligned_cols=70  Identities=11%  Similarity=-0.056  Sum_probs=42.7

Q ss_pred             hhhccCCCCCCcEEEEEecCHhHHHHHHHHHH-hCC--c-EEEeCCcchHHhhhhcc--CCC--cccccc--cCcEEEEe
Q psy13395        143 KHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHA-SLK--L-KKYNRGLTEGTVTGSTK--KGM--ATEDVI--TAKLIYDK  212 (224)
Q Consensus       143 ~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~-v~~--i-~v~~R~~~~a~~~a~~~--~g~--~~~~v~--~advvv~~  212 (224)
                      ++|...   ...+++|||+|..|+.+++.+.. ...  + -++++++++........  ..+  ..+-+.  +.|+|+-+
T Consensus        77 ~~l~~~---~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa  153 (213)
T PRK05472         77 KILGLD---RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILT  153 (213)
T ss_pred             HHhCCC---CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEe
Confidence            345445   67799999999999999886432 122  3 78888877764433211  111  122222  47888877


Q ss_pred             ccc
Q psy13395        213 YQA  215 (224)
Q Consensus       213 ~~~  215 (224)
                      +..
T Consensus       154 ~P~  156 (213)
T PRK05472        154 VPA  156 (213)
T ss_pred             CCc
Confidence            654

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=80.81  E-value=4.6  Score=36.15  Aligned_cols=64  Identities=14%  Similarity=0.191  Sum_probs=43.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc------cCC------C----cccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST------KKG------M----ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~------~~g------~----~~~~v~~advvv~~~~  214 (224)
                      ...+++|||+|.+|..-...+... .++.+|.|+...  ++...      ..+      .    ..+++...|+||-++-
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK   81 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYE--AVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLK   81 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHH--HHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEec
Confidence            456899999999999988888775 345888887633  33221      011      0    2345678899999987


Q ss_pred             ccc
Q psy13395        215 AQH  217 (224)
Q Consensus       215 ~~~  217 (224)
                      ..+
T Consensus        82 ~~~   84 (313)
T PRK06249         82 TTA   84 (313)
T ss_pred             CCC
Confidence            654

>PRK05086 malate dehydrogenase; Provisional

Probab=80.61  E-value=4.8  Score=36.45  Aligned_cols=63  Identities=14%  Similarity=0.126  Sum_probs=43.6

Q ss_pred             EEEEEec-CHhHHHHHHHHHHhCCc----EEEeCCcchHH----hhhhcc--C---C---Cc-ccccccCcEEEEecccc
Q psy13395        155 VLAIMGS-GAQAYIHAKAFHASLKL----KKYNRGLTEGT----VTGSTK--K---G---MA-TEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGa-G~QA~~hl~a~~~v~~i----~v~~R~~~~a~----~~a~~~--~---g---~~-~~~v~~advvv~~~~~~  216 (224)
                      +++|||+ |.+|..-+..+....++    .+++|++. ++    .+.+..  .   |   -. .+++.++|+||.+.+..
T Consensus         2 KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             EEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            6899999 99999988877554442    88888753 32    222211  1   1   12 57889999999999987


Q ss_pred             cc
Q psy13395        217 HS  218 (224)
Q Consensus       217 ~~  218 (224)
                      |.
T Consensus        81 ~~   82 (312)
T PRK05086         81 RK   82 (312)
T ss_pred             CC
Confidence            65

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=80.58  E-value=1.8  Score=43.95  Aligned_cols=62  Identities=15%  Similarity=0.070  Sum_probs=43.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---------cCC-----------------Ccccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---------KKG-----------------MATEDVI  204 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---------~~g-----------------~~~~~v~  204 (224)
                      +.++|+|||+|.+|.--...++.. +++.+|+++++..++-.++         ..|                 ...+++.
T Consensus       334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  413 (737)
T TIGR02441       334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFK  413 (737)
T ss_pred             cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence            457899999999998877776544 3459999999875442210         011                 1346788


Q ss_pred             cCcEEEEec
Q psy13395        205 TAKLIYDKY  213 (224)
Q Consensus       205 ~advvv~~~  213 (224)
                      ++|+||.+-
T Consensus       414 ~aDlViEAv  422 (737)
T TIGR02441       414 NADMVIEAV  422 (737)
T ss_pred             cCCeehhhc
Confidence            999999873

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK06487 glycerate dehydrogenase; Provisional

Probab=80.48  E-value=3.1  Score=37.73  Aligned_cols=58  Identities=10%  Similarity=-0.036  Sum_probs=39.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+.-.+.+.. |..  ..|+|.... +. .+  .--..+.+.+||+|+...-
T Consensus       147 ~gktvgIiG~G~IG~~vA~~l~~-fgm~V~~~~~~~~~-~~-~~--~~~l~ell~~sDiv~l~lP  206 (317)
T PRK06487        147 EGKTLGLLGHGELGGAVARLAEA-FGMRVLIGQLPGRP-AR-PD--RLPLDELLPQVDALTLHCP  206 (317)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhh-CCCEEEEECCCCCc-cc-cc--ccCHHHHHHhCCEEEECCC
Confidence            56799999999999999988764 553  677876321 11 11  1124566789999997654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
2i99_A	312	Crystal Structure Of Human Mu_crystallin At 2.6 Ang		1e-15
1vll_A	334	Crystal Structure Of Alanine Dehydrogenase (Af1665)		6e-08
1omo_A	322	Alanine Dehydrogenase Dimer WBOUND NAD (ARCHAEAL) L		6e-08
1u7h_A	350	Structure And A Proposed Mechanism For Ornithine Cy		4e-04

>pdb|2I99|A Chain A, Crystal Structure Of Human Mu_crystallin At 2.6 Angstrom Length = 312

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 84/173 (48%), Gaps = 16/173 (9%)
Query: 19  PLFLSDEQVRDLLDWESL-VPAIXXXXXXXXXX---XXIQPARLFMRIPEVNGVLLSMPG 74
           P FLS  +V + L   SL +P +               +QP R  + + +  G L  MP 
Sbjct: 4   PAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGVMPA 63
Query: 75  YIKRTGPDGEDSLAIKVVTSFTDNKVKGL-PSVLATVLLYNTDNGKLKVVMEGTEITKWR 133
           Y        ED+L  K+VT + D  +  + PS  ATVLL+   NG L  VM+G  IT  R
Sbjct: 64  Y-----SAAEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKR 118
Query: 134 TAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
           TAA S +ATK L   S +   VL I+G+G QAY H + F      K+   +NR
Sbjct: 119 TAAVSAIATKFLKPPSSE---VLCILGAGVQAYSHYEIFTEQFSFKEVRIWNR 168

>pdb|1VLL|A Chain A, Crystal Structure Of Alanine Dehydrogenase (Af1665) From Archaeoglobus Fulgidus At 2.80 A Resolution Length = 334

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 20  LFLSDEQVRDLLDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYIKRT 79
           L L+ E+V  L+  +  + A+              P ++++   +  G L +MP ++   
Sbjct: 16  LILTQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVYLEFEK--GDLRAMPAHL--M 71
Query: 80  GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
           G  G     +K V S   N  KGLP+V+A ++L + + G    VM+ T  T  RT AA  
Sbjct: 72  GYAG-----LKWVNSHPGNPDKGLPTVMALMILNSPETGFPLAVMDATYTTSLRTGAAGG 126
Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFH 173
           +A K+L  ++     V   +G G QAY   +A  
Sbjct: 127 IAAKYLARKNSS---VFGFIGCGTQAYFQLEALR 157

>pdb|1OMO|A Chain A, Alanine Dehydrogenase Dimer WBOUND NAD (ARCHAEAL) Length = 322

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 20  LFLSDEQVRDLLDWESLVPAIXXXXXXXXXXXXIQPARLFMRIPEVNGVLLSMPGYIKRT 79
           L L+ E+V  L+  +  + A+              P ++++   +  G L +MP ++   
Sbjct: 4   LILTQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVYLEFEK--GDLRAMPAHL--M 59
Query: 80  GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
           G  G     +K V S   N  KGLP+V+A ++L + + G    VM+ T  T  RT AA  
Sbjct: 60  GYAG-----LKWVNSHPGNPDKGLPTVMALMILNSPETGFPLAVMDATYTTSLRTGAAGG 114
Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFH 173
           +A K+L  ++     V   +G G QAY   +A  
Sbjct: 115 IAAKYLARKNSS---VFGFIGCGTQAYFQLEALR 145

>pdb|1U7H|A Chain A, Structure And A Proposed Mechanism For Ornithine Cyclodeaminase From Pseudomonas Putida Length = 350

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 88  AIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFG 147
           A K V     N  + L +V A  +L + D+G   ++ E T  T  RTAA S+ A + L  
Sbjct: 67  AFKYVNGHPANTARNLHTVXAFGVLADVDSGYPVLLSELTIATALRTAATSLXAAQALAR 126
Query: 148 RSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK 180
            +  K    A++G+GAQ+   A AFH  L +++
Sbjct: 127 PNARK---XALIGNGAQSEFQALAFHKHLGIEE 156

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	8e-47
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	1e-45
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	6e-40
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	6e-37

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A Length = 322

 Score =  156 bits (396), Expect = 8e-47
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 15/167 (8%)

Query: 20  LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
           L L+ E+V  L+  +  + A+E      +  +   P ++++      G L +MP ++   
Sbjct: 4   LILTQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVYLEFE--KGDLRAMPAHL--- 58

Query: 80  GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
                    +K V S   N  KGLP+V+A ++L + + G    VM+ T  T  RT AA  
Sbjct: 59  ----MGYAGLKWVNSHPGNPDKGLPTVMALMILNSPETGFPLAVMDATYTTSLRTGAAGG 114

Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
           +A K+L  R      V   +G G QAY   +A      + +   Y+ 
Sbjct: 115 IAAKYL-ARKNSS--VFGFIGCGTQAYFQLEALRRVFDIGEVKAYDV 158

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} Length = 312

 Score =  152 bits (387), Expect = 1e-45
 Identities = 63/175 (36%), Positives = 88/175 (50%), Gaps = 16/175 (9%)

Query: 17  QPPLFLSDEQVRDLLD-WESLVPAIESVMVKVSKK---EVIQPARLFMRIPEVNGVLLSM 72
           + P FLS  +V + L     L+P +E+ +   S      V+QP R  + + +  G L  M
Sbjct: 2   RVPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGVM 61

Query: 73  PGYIKRTGPDGEDSLAIKVVTSFTDNKVK-GLPSVLATVLLYNTDNGKLKVVMEGTEITK 131
           P Y        ED+L  K+VT + D  +   +PS  ATVLL+   NG L  VM+G  IT 
Sbjct: 62  PAYSA-----AEDALTTKLVTFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITA 116

Query: 132 WRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
            RTAA S +ATK L      +  VL I+G+G QAY H + F      K+   +NR
Sbjct: 117 KRTAAVSAIATKFL-KPPSSE--VLCILGAGVQAYSHYEIFTEQFSFKEVRIWNR 168

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} Length = 313

 Score =  138 bits (349), Expect = 6e-40
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 20/167 (11%)

Query: 20  LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
           L + D  + D +  ++    + +  +   +       R  +R       L ++   I   
Sbjct: 5   LHIDDAMIEDAVTPQAAQEVLHAAFLDFGRGSAAMQRR--VRTEAGGVKLSTLGAVI--- 59

Query: 80  GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
              G+     KV T+               +LL++  +G+     +   +T+ RTAA +V
Sbjct: 60  --PGQGVAGAKVYTTIKGQ-------FQFVILLFSAADGRPLATCDAGTLTRKRTAACTV 110

Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
           +A   L  R      VL + G+G Q   HA    A   L+    ++ 
Sbjct: 111 LAAGAL-ARPRSS--VLGLFGAGTQGAEHAAQLSARFALEAILVHDP 154

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* Length = 350

 Score =  131 bits (331), Expect = 6e-37
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 24/174 (13%)

Query: 20  LFLSDEQVRDLLD-------WESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSM 72
            F+    + DL+           L  A+     +    +        +      GV+  M
Sbjct: 3   YFIDVPTMSDLVHDIGVAPFIGELAAALRDDFKRWQAFDKSAR----VASHSEVGVIELM 58

Query: 73  PGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKW 132
           P          +   A K V     N  + L +V+A  +L + D+G   ++ E T  T  
Sbjct: 59  PVA-------DKSRYAFKYVNGHPANTARNLHTVMAFGVLADVDSGYPVLLSELTIATAL 111

Query: 133 RTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKK---YNR 183
           RTAA S++A + L  R   +   +A++G+GAQ+   A AFH  L +++   Y+ 
Sbjct: 112 RTAATSLMAAQAL-ARPNAR--KMALIGNGAQSEFQALAFHKHLGIEEIVAYDT 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	100.0
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	100.0
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	100.0
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	100.0
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.68
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.74
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.72
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.66
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.62
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.54
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.53
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.5
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.47
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.46
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.44
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.43
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.43
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.43
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.42
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.42
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.3
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.3
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.3
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.29
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.28
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.27
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.25
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.25
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.25
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.22
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.21
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.1
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.09
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.06
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.06
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.05
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.01
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.0
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.0
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.99
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.99
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	96.98
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.93
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.89
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.87
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.87
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.87
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.85
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.84
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.8
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	96.77
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.75
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.66
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.65
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	96.6
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.58
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	96.58
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	96.57
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.56
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	96.55
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.54
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.52
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.52
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.51
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	96.49
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	96.48
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.47
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.46
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.44
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.43
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	96.43
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	96.42
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.41
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.4
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	96.38
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.37
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.35
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.35
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.34
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.27
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.27
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.27
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.26
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.23
4h3v_A	390	Oxidoreductase domain protein; structural genomics	96.23
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.23
4had_A	350	Probable oxidoreductase protein; structural genomi	96.19
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.19
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.19
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.19
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	96.18
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.17
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.16
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.15
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.15
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.14
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.14
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.11
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.05
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.04
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.04
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.99
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.96
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	95.94
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.92
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.92
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	95.9
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	95.83
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	95.81
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.8
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	95.79
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	95.77
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.74
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.71
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.67
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.66
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.65
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	95.65
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.64
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.64
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	94.59
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	95.58
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.56
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	95.55
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.52
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.44
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.41
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.39
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	95.38
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.38
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	95.37
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.37
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.37
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	95.32
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.27
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	95.26
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.25
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.2
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.19
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	95.17
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	95.15
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.14
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	95.05
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.05
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.03
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.99
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.96
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	94.95
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	94.9
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	94.88
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	94.81
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	94.8
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.76
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.75
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	94.73
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	94.73
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.7
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.67
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	94.65
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	94.59
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	94.58
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.54
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.53
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	94.49
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	94.49
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	94.47
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	94.41
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.32
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	94.23
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	94.23
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.13
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.1
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	94.07
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	94.05
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	94.02
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	93.95
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	93.94
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	93.88
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.85
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	93.85
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	93.84
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	93.81
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	93.81
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	93.79
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.79
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.76
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	93.76
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	93.76
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	93.75
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	93.75
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	93.72
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	93.71
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	93.64
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	93.63
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	93.58
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	93.49
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	93.49
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	93.37
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	93.37
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	93.33
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	93.3
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	93.25
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	93.22
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	93.18
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	93.1
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	93.09
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	93.08
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	93.05
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.02
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	93.02
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.95
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	92.94
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	92.93
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	92.88
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	92.86
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.86
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	92.83
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	92.78
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	92.75
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	92.69
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	92.69
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.68
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	92.66
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	92.64
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	92.63
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	92.61
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	92.59
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	92.44
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	92.4
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	92.39
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	92.38
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	92.32
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.31
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	92.19
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	92.19
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.19
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	92.14
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	92.12
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	91.85
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	91.81
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	91.77
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	91.72
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	91.68
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	91.66
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	91.65
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	91.55
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	91.53
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	91.47
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	91.38
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	91.1
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	90.96
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.94
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	90.88
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	90.82
2duw_A	145	Putative COA-binding protein; ligand binding prote	90.76
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	90.69
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	90.52
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	90.46
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	90.38
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	90.36
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	90.29
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	90.24
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	90.23
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	90.2
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	90.19
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	90.14
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	90.04
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	89.99
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	89.97
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	89.95
4g65_A	461	TRK system potassium uptake protein TRKA; structur	89.58
3tl2_A	315	Malate dehydrogenase; center for structural genomi	89.54
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	89.43
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	89.42
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.3
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	89.14
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	89.07
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	88.99
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	88.92
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	88.9
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	88.83
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	88.52
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	88.52
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	88.33
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	88.15
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	88.02
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	87.84
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	87.75
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	87.7
3l07_A	285	Bifunctional protein fold; structural genomics, ID	87.58
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	87.49
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	87.43
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	87.37
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	87.22
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	86.95
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	86.82
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	86.68
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	86.2
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	85.7
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	85.63
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	85.52
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	85.34
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	85.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	84.65
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	84.28
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	83.58
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	82.82
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	82.64
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	82.64
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	81.81
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	81.5
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	81.38
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	81.36
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	81.17
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	80.8
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	80.24

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=100.00  E-value=4.5e-43  Score=314.83  Aligned_cols=186  Identities=25%  Similarity=0.363  Sum_probs=172.9

Q ss_pred             CCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCC
Q psy13395         18 PPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTD   97 (224)
Q Consensus        18 ~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~   97 (224)
                      +|+||+++||+++|+++++++++|++|..+++|++.+|+|..++++  ++++++||+|+++       ++|+||+++||+
T Consensus         2 ~~~~l~~~~v~~~l~~~~~i~~~~~a~~~~~~g~~~~p~~~~~~~~--~~~~~~mpa~~~~-------~~g~K~v~~~p~   72 (322)
T 1omo_A            2 ETLILTQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVYLEFE--KGDLRAMPAHLMG-------YAGLKWVNSHPG   72 (322)
T ss_dssp             CEEEECHHHHHTSCCHHHHHHHHHHHHHHHHTTCSBCCCCEEEECS--SCEEEEEEEEETT-------EEEEEEEEECTT
T ss_pred             ceEEECHHHHHHhCCHHHHHHHHHHHHHHHhcCCCcCCCEEEecCC--CCeEEEEeeEcCC-------ceEEEEEecCCC
Confidence            5899999999999999999999999999999999999999999875  7899999999974       899999999999


Q ss_pred             CCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC
Q psy13395         98 NKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK  177 (224)
Q Consensus        98 N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~  177 (224)
                      |+.+|||+++++++|||++||+|+|+||++.||++||+|+|++++++|+++   ++++++|||+|.||++|++++..+++
T Consensus        73 N~~~glp~~~~~~~L~d~~tG~p~a~~d~~~lt~~RTaa~s~laa~~la~~---~~~~v~iIGaG~~a~~~~~al~~~~~  149 (322)
T 1omo_A           73 NPDKGLPTVMALMILNSPETGFPLAVMDATYTTSLRTGAAGGIAAKYLARK---NSSVFGFIGCGTQAYFQLEALRRVFD  149 (322)
T ss_dssp             TGGGTSCSCCEEEEEECTTTCCEEEEEECHHHHHHHHHHHHHHHHHHHSCT---TCCEEEEECCSHHHHHHHHHHHHHSC
T ss_pred             ccccCCCceeEEEEEEECCCCCEEEEEcCchHHHHHHHHHHHHHHHhccCC---CCCEEEEEcCcHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999   99999999999999999999999887


Q ss_pred             c---EEEeCCcchHHhhhhccC--------CCcccccccCcEEEEecccc
Q psy13395        178 L---KKYNRGLTEGTVTGSTKK--------GMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       178 i---~v~~R~~~~a~~~a~~~~--------g~~~~~v~~advvv~~~~~~  216 (224)
                      +   .||||+++++++|+++..        .-..+.+ ++||||++|...
T Consensus       150 ~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~  198 (322)
T 1omo_A          150 IGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSR  198 (322)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCS
T ss_pred             ccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCC
Confidence            5   999999999999987421        1135667 999999999864

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=100.00  E-value=7.5e-42  Score=305.12  Aligned_cols=192  Identities=36%  Similarity=0.507  Sum_probs=176.4

Q ss_pred             CCCeeeCHHHHHhcCChhH-HHHHHHHHHHhhh---cCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEE
Q psy13395         17 QPPLFLSDEQVRDLLDWES-LVPAIESVMVKVS---KKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVV   92 (224)
Q Consensus        17 ~~~~~Ls~~dV~~ll~~~~-~i~ale~af~~~~---~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~v   92 (224)
                      ..|+||+++||+++|++++ +++++|++|+.++   +|+..+|+|..+.++++++.+++||+|+++     .+++|+||+
T Consensus         2 ~~~~~l~~~~v~~~l~~~~~~i~~~~~a~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~mpa~~~~-----~~~~g~K~~   76 (312)
T 2i99_A            2 RVPAFLSAAEVEEHLRSSSLLIPPLETALANFSSGPEGGVMQPVRTVVPVTKHRGYLGVMPAYSAA-----EDALTTKLV   76 (312)
T ss_dssp             CCCEEECHHHHHHHCCCGGGGHHHHHHHHHHHHSGGGGCEECCCCEEEEEGGGTEEEEEEEEEETT-----TTEEEEEEE
T ss_pred             CccEEeCHHHHHHHhChHHHHHHHHHHHHHHhhhccCCCCcCCCEEEeccCCCCCEEEEeeEEeCC-----CCEEEEEEE
Confidence            4799999999999999999 9999999999999   889999999999887668899999999986     468999999


Q ss_pred             eecCCCCCC-CCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHH
Q psy13395         93 TSFTDNKVK-GLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA  171 (224)
Q Consensus        93 s~~p~N~~~-glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a  171 (224)
                      ++||+|+.+ |+|+++++++|||++||+|+|+||++.||++||+|+|++++++|+++   +.++++|||+|.||++|+++
T Consensus        77 ~~~p~N~~~~glp~~~~~~~l~d~~tG~p~a~~d~~~lt~~rT~a~~~la~~~la~~---~~~~igiIG~G~~g~~~a~~  153 (312)
T 2i99_A           77 TFYEDRGITSVVPSHQATVLLFEPSNGTLLAVMDGNVITAKRTAAVSAIATKFLKPP---SSEVLCILGAGVQAYSHYEI  153 (312)
T ss_dssp             EEECCCSSSSCSSSEEEEEEEECTTTCCEEEEEECHHHHHHHHHHHHHHHHHHHSCT---TCCEEEEECCSHHHHHHHHH
T ss_pred             EecCCCccccCCCceEEEEEEEECCCCCEEEEEcchhHHHHHHHHHHHHHHHHhCCC---CCcEEEEECCcHHHHHHHHH
Confidence            999999999 99999999999999999999999999999999999999999999999   99999999999999999999


Q ss_pred             HHHhCCc---EEEeCCcchHHhhhhccC-CC-----cccccccCcEEEEecccc
Q psy13395        172 FHASLKL---KKYNRGLTEGTVTGSTKK-GM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       172 ~~~v~~i---~v~~R~~~~a~~~a~~~~-g~-----~~~~v~~advvv~~~~~~  216 (224)
                      +...+++   .+|||+++++++|++... .+     ..+.+.++||||++|.+.
T Consensus       154 l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~  207 (312)
T 2i99_A          154 FTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT  207 (312)
T ss_dssp             HHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS
T ss_pred             HHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC
Confidence            9988653   999999999999987532 12     356678999999999753

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=100.00  E-value=6.3e-42  Score=306.98  Aligned_cols=182  Identities=17%  Similarity=0.227  Sum_probs=166.2

Q ss_pred             CCCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecC
Q psy13395         17 QPPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFT   96 (224)
Q Consensus        17 ~~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p   96 (224)
                      +.|+||+++||+++|+++++++++|++|+.+++|++.+|+|..+..  +++.+++||+|+++     .+++|+||+++||
T Consensus         2 ~~m~~l~~~~v~~~l~~~~~i~av~~a~~~~~~g~~~~ppr~~~~~--~~~~~~~mpa~~~~-----~~~~g~K~~~~~p   74 (313)
T 3hdj_A            2 NAMLHIDDAMIEDAVTPQAAQEVLHAAFLDFGRGSAAMQRRVRTEA--GGVKLSTLGAVIPG-----QGVAGAKVYTTIK   74 (313)
T ss_dssp             -CCEEECHHHHHHHCCHHHHHHHHHHHHHHHHTTSSEEEEEEEEEE--TTEEEEEEEEEEGG-----GTEEEEEEEEEET
T ss_pred             CccEEECHHHHHHhCCHHHHHHHHHHHHHHhhCCCccCCCceEEec--CCceEEEeeEEcCC-----CCeeEEEEeecCC
Confidence            4799999999999999999999999999999999999999999876  37899999999987     6799999999999


Q ss_pred             CCCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhC
Q psy13395         97 DNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASL  176 (224)
Q Consensus        97 ~N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~  176 (224)
                      +|       .+++++|||++||+|+|+|||++||++||||+|+++++||+|+   ++++++|||+|.||++|++++..++
T Consensus        75 ~n-------~~~~v~L~d~~tG~p~a~ld~~~lT~~RTaA~s~laa~~La~~---~~~~v~iIGaG~~a~~~~~al~~~~  144 (313)
T 3hdj_A           75 GQ-------FQFVILLFSAADGRPLATCDAGTLTRKRTAACTVLAAGALARP---RSSVLGLFGAGTQGAEHAAQLSARF  144 (313)
T ss_dssp             TE-------EEEEEEEEETTTCCEEEEECSHHHHHHHHHHHHHHHHHHHSCT---TCCEEEEECCSHHHHHHHHHHHHHS
T ss_pred             CC-------ceEEEEEEECCCCCEEEEEcCchhhhHHHHHHHHHHHHhhccC---CCcEEEEECccHHHHHHHHHHHHhC
Confidence            87       4799999999999999999999999999999999999999999   9999999999999999999999998


Q ss_pred             Cc---EEEeCCcchHHhhhhc---cCCC------cccccccCcEEEEeccccc
Q psy13395        177 KL---KKYNRGLTEGTVTGST---KKGM------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       177 ~i---~v~~R~~~~a~~~a~~---~~g~------~~~~v~~advvv~~~~~~~  217 (224)
                      ++   .||||+  ++++|+++   ..|+      ..+++.+|||||++|.+.+
T Consensus       145 ~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~~  195 (313)
T 3hdj_A          145 ALEAILVHDPY--ASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRSTT  195 (313)
T ss_dssp             CCCEEEEECTT--CCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCSS
T ss_pred             CCcEEEEECCc--HHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCCC
Confidence            86   999999  88888874   2243      3567789999999998753

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=100.00  E-value=3.1e-40  Score=300.09  Aligned_cols=184  Identities=26%  Similarity=0.288  Sum_probs=168.2

Q ss_pred             CeeeCHHHHHhcCC-------hhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEE
Q psy13395         19 PLFLSDEQVRDLLD-------WESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKV   91 (224)
Q Consensus        19 ~~~Ls~~dV~~ll~-------~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~   91 (224)
                      |+||+++||+++|+       ++++++++|++|..+++  +.+|+|..++.  ++|.+++||++.++       .+|+||
T Consensus         2 ~~~l~~~~v~~ll~~~~~~~~~~~~i~al~~a~~~~~~--~~~p~r~~~~~--~~g~~~~mpa~~~~-------~~g~K~   70 (350)
T 1x7d_A            2 TYFIDVPTMSDLVHDIGVAPFIGELAAALRDDFKRWQA--FDKSARVASHS--EVGVIELMPVADKS-------RYAFKY   70 (350)
T ss_dssp             CEEECHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTGGG--SBCCCCEEEEC--SSCEEEEEEEECSS-------EEEEEE
T ss_pred             eEEECHHHHHHHhccccchhhHHHHHHHHHHHHHhhhc--CcCCCeEEecC--CCCEEEEEeccCCC-------cEEEEE
Confidence            78999999999999       99999999999999874  68999987764  47899999999764       899999


Q ss_pred             EeecCCCCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHH
Q psy13395         92 VTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA  171 (224)
Q Consensus        92 vs~~p~N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a  171 (224)
                      +++||+|+.+|+|+++++++|||++||+|+|+||++.||++||+|+|++++++|+++   ++++++|||+|.||++|+++
T Consensus        71 v~~~p~N~~~glp~~~~~~~L~d~~tG~p~a~~d~~~lT~~RTaa~s~laa~~la~~---~~~~v~iIGaG~~a~~~a~a  147 (350)
T 1x7d_A           71 VNGHPANTARNLHTVMAFGVLADVDSGYPVLLSELTIATALRTAATSLMAAQALARP---NARKMALIGNGAQSEFQALA  147 (350)
T ss_dssp             EEECGGGGGGTCCSEEEEEEEEETTTCCEEEEEECHHHHHHHHHHHHHHHHHHHSCT---TCCEEEEECCSTTHHHHHHH
T ss_pred             EEecCCcccCCCccEEEEEEEEECCCCCEEEEEcCCEEEeehhhHHHHHHHHHhccc---cCCeEEEECCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999   99999999999999999999


Q ss_pred             HHHhCCc---EEEeCCcchHHhhhhccC---CC-------cccccccCcEEEEecccc
Q psy13395        172 FHASLKL---KKYNRGLTEGTVTGSTKK---GM-------ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       172 ~~~v~~i---~v~~R~~~~a~~~a~~~~---g~-------~~~~v~~advvv~~~~~~  216 (224)
                      +..++++   .||||+++++++|+++..   |+       ..+.+.++||||++|...
T Consensus       148 l~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~  205 (350)
T 1x7d_A          148 FHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK  205 (350)
T ss_dssp             HHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS
T ss_pred             HHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC
Confidence            9988875   999999999999997531   42       356778999999999875

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.68  E-value=8.1e-09  Score=80.74  Aligned_cols=80  Identities=9%  Similarity=0.042  Sum_probs=65.5

Q ss_pred             hhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccC------CCcccccccC
Q psy13395        135 AAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKK------GMATEDVITA  206 (224)
Q Consensus       135 aA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~------g~~~~~v~~a  206 (224)
                      .+++..|++++.+.   ..++++|||+|.+|+.+++.+.. ++  +.+|+|++++++.|+++..      .-..+.+.++
T Consensus         6 ~sv~~~a~~~~~~~---~~~~v~iiG~G~iG~~~a~~l~~-~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   81 (144)
T 3oj0_A            6 VSIPSIVYDIVRKN---GGNKILLVGNGMLASEIAPYFSY-PQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNN   81 (144)
T ss_dssp             CSHHHHHHHHHHHH---CCCEEEEECCSHHHHHHGGGCCT-TTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTC
T ss_pred             ccHHHHHHHHHHhc---cCCEEEEECCCHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCC
Confidence            35677788999988   89999999999999999999877 44  4999999999999987532      1134567899


Q ss_pred             cEEEEecccccc
Q psy13395        207 KLIYDKYQAQHS  218 (224)
Q Consensus       207 dvvv~~~~~~~~  218 (224)
                      |+||++|...|.
T Consensus        82 Divi~at~~~~~   93 (144)
T 3oj0_A           82 DVIITATSSKTP   93 (144)
T ss_dssp             SEEEECSCCSSC
T ss_pred             CEEEEeCCCCCc
Confidence            999999998764

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.74  E-value=9.4e-05  Score=64.45  Aligned_cols=67  Identities=12%  Similarity=0.133  Sum_probs=53.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCC-----Cccccc--ccCcEEEEecccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKG-----MATEDV--ITAKLIYDKYQAQHS  218 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g-----~~~~~v--~~advvv~~~~~~~~  218 (224)
                      ..++++|+|+|.+|+..+.++...-  .+.||||+++++++++++...     ...+++  .++||||.+|.....
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~  194 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLT  194 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGG
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCC
Confidence            5789999999999999999998854  249999999999999875322     122333  689999999987643

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.72  E-value=6.5e-05  Score=65.95  Aligned_cols=66  Identities=11%  Similarity=0.094  Sum_probs=53.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCC---C------cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKG---M------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g---~------~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||+|.+|+..++++...-  .+.||||+++++++|++....   .      ..+.+.++||||++|....
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~  216 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM  216 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence            4689999999999999999998764  259999999999999875321   1      2356779999999998765

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.66  E-value=6.8e-05  Score=65.46  Aligned_cols=63  Identities=17%  Similarity=0.065  Sum_probs=51.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC---cccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM---ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~---~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|+|+|..|+.-+.++...-. +.||||+++++++++ + .++   ..+++.++||||.+|...
T Consensus       117 ~~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~-~~~~~~~~~~l~~~DiVInaTp~G  183 (269)
T 3phh_A          117 NYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-R-LGCDCFMEPPKSAFDLIINATSAS  183 (269)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-H-HTCEEESSCCSSCCSEEEECCTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-H-CCCeEecHHHhccCCEEEEcccCC
Confidence            36799999999999999999988763 499999999999998 3 232   334555999999999865

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.62  E-value=0.0001  Score=64.11  Aligned_cols=65  Identities=22%  Similarity=0.236  Sum_probs=51.5

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccC-CCc-ccccccCcEEEEeccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKK-GMA-TEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~-g~~-~~~v~~advvv~~~~~~~  217 (224)
                      .++++|||+|.+|+..+.++...-  .+.||||+++++++|+++.. .+. ...+.++||||.+|....
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~~DivInaTp~gm  187 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADILVNVTSIGM  187 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCTTCCCSEEEECSSTTC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhhcccCCEEEECCCCCc
Confidence            478999999999999999998764  35999999999999987531 111 112568999999999865

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.54  E-value=0.00011  Score=64.28  Aligned_cols=66  Identities=18%  Similarity=0.218  Sum_probs=52.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccC--C-C---ccccc-ccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKK--G-M---ATEDV-ITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~--g-~---~~~~v-~~advvv~~~~~~~  217 (224)
                      ..++++|+|+|.+|+..+.++...-  .+.||||+++++++++++..  + +   ..+++ .++||||++|....
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm  199 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASL  199 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCC
Confidence            5789999999999999999998854  24999999999999987422  1 1   22333 68999999998764

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.53  E-value=0.00019  Score=62.03  Aligned_cols=66  Identities=14%  Similarity=0.121  Sum_probs=53.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC----CCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK----GMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~----g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||+|.+|+..++++...- .+.+|+|+++++++++++..    .-..+.+.++||||.+|..+.
T Consensus       128 ~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~  198 (275)
T 2hk9_A          128 KEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGL  198 (275)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTS
T ss_pred             CCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCC
Confidence            4678999999999999999998764 35999999999999886421    123566789999999998765

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.50  E-value=6.2e-05  Score=64.89  Aligned_cols=61  Identities=18%  Similarity=0.148  Sum_probs=50.1

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~  215 (224)
                      +++|||+|.+|+..+.++...-  .+.||||+++++++|+++....    ..+.+.++||||.+|..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~  176 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSV  176 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSST
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCC
Confidence            8999999999999999998754  3599999999999998753211    24557799999999965

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.47  E-value=0.00012  Score=61.89  Aligned_cols=64  Identities=6%  Similarity=-0.012  Sum_probs=51.1

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-----CcEEEeCCcchHHhhhhccC----CCcccccccCcEEEEeccccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-----KLKKYNRGLTEGTVTGSTKK----GMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-----~i~v~~R~~~~a~~~a~~~~----g~~~~~v~~advvv~~~~~~~  217 (224)
                      .+++|||+|.+|....+.+....     .+.+|+|++++++.++++..    .-..+.+.++||||.++..++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~~   75 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPDL   75 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTTT
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHHH
Confidence            47999999999999999998864     34999999999999876421    124566789999999986543

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.46  E-value=0.00015  Score=63.39  Aligned_cols=65  Identities=11%  Similarity=0.008  Sum_probs=52.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccC----CC---------cccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKK----GM---------ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~----g~---------~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|+|+|.+|+..+.++...-.  +.||||+++++++++++..    ++         ..+.+.++||||.+|...
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~G  205 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG  205 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCC
Confidence            57899999999999999999988642  5999999999999986321    11         234567899999999864

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.44  E-value=0.00019  Score=62.20  Aligned_cols=64  Identities=14%  Similarity=0.156  Sum_probs=52.3

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC----CcEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL----KLKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~----~i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~  217 (224)
                      ..+++|||+|.+|...++.+...-    ++.+|+|++++++.+.++. |+     ..+++.++||||.++..|+
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~-gi~~~~~~~~~~~~aDvVilav~p~~   75 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC-GVHTTQDNRQGALNADVVVLAVKPHQ   75 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT-CCEEESCHHHHHSSCSEEEECSCGGG
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc-CCEEeCChHHHHhcCCeEEEEeCHHH
Confidence            357999999999999999998763    3499999999999988752 43     4567889999999986654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.43  E-value=0.00014  Score=64.02  Aligned_cols=64  Identities=13%  Similarity=0.188  Sum_probs=51.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC---CCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~~~  215 (224)
                      +..+++|||+|.+|....+.+... +++.+|+|++++++.+.+...   .-..+.+.++||||.++..
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~   97 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLEN   97 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCC
Confidence            567999999999999999998876 345999999999999987511   1245667899999998863

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.43  E-value=0.00011  Score=64.29  Aligned_cols=65  Identities=17%  Similarity=0.153  Sum_probs=51.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCC--C--cccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKG--M--ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g--~--~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|+|+|..|+..+.++...-  .+.||||++++++++++....  +  ..+.+.++||||.+|...
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~G  186 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAG  186 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC--
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCC
Confidence            4678999999999999999998864  359999999999999863211  1  344578999999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.43  E-value=0.00016  Score=62.21  Aligned_cols=61  Identities=13%  Similarity=0.137  Sum_probs=50.0

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC---CCcccccccCcEEEEecc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~~  214 (224)
                      .+++|||+|.+|....+.+...- ++.+|+|++++++.+.+...   .-..+.+.++|+||.++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcC
Confidence            57999999999999999988763 35999999999999887421   224566789999999987

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.42  E-value=0.00013  Score=62.89  Aligned_cols=66  Identities=12%  Similarity=0.167  Sum_probs=51.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccC---CC---ccccc-c-cCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKK---GM---ATEDV-I-TAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~---g~---~~~~v-~-~advvv~~~~~~~  217 (224)
                      ..++++|+|+|.+|+..+.++..... +.||||+++++++|++...   .+   ..+++ . ++||||.+|....
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~  192 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGL  192 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCC
Confidence            56899999999999999999988753 5999999999999986421   11   22355 3 8999999998765

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.42  E-value=0.00012  Score=64.38  Aligned_cols=62  Identities=13%  Similarity=0.055  Sum_probs=50.8

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---cCCCcccccccCcEEEEecc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---KKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---~~g~~~~~v~~advvv~~~~  214 (224)
                      -++|++||.|.++....+.+... +++.+|||++++++.|.+.   ....+.+.+.++||||+...
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~   68 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLP   68 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCS
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCC
Confidence            46899999999999999988775 4569999999999999874   22346777889999998753

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.30  E-value=0.00039  Score=59.30  Aligned_cols=62  Identities=13%  Similarity=0.085  Sum_probs=50.0

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC---CCcccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~~~~~  217 (224)
                      +++|||+|.+|+.+++++...- .+.+|+|++++++.|++...   .-..+. .++||||.+|....
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~  183 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKA-REARLLVNATRVGL  183 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTT
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCC
Confidence            8999999999999999988753 35999999999998886421   113344 88999999999873

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.30  E-value=0.00035  Score=58.00  Aligned_cols=64  Identities=20%  Similarity=0.152  Sum_probs=50.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      +..+++|||+|.+|..+++.+...- .+.+|+|++++++.+.+.  |+    ..+.+.++|+||.++..++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~--g~~~~~~~~~~~~~DvVi~av~~~~   95 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPS--AAQVTFQEEAVSSPEVIFVAVFREH   95 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBT--TSEEEEHHHHTTSCSEEEECSCGGG
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--CCceecHHHHHhCCCEEEECCChHH
Confidence            3468999999999999999987653 359999999998888653  33    3456779999999998765

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.30  E-value=0.00021  Score=62.68  Aligned_cols=62  Identities=13%  Similarity=0.170  Sum_probs=44.0

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---cCCCcccccccCcEEEEecc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---KKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---~~g~~~~~v~~advvv~~~~  214 (224)
                      +++|++||.|.+|....+.+... +++.+|||++++++.|.+.   ......+.+.++||||+...
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~   70 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLA   70 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCS
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeecc
Confidence            45799999999999999988775 4569999999999999873   12346778889999998764

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.29  E-value=0.00041  Score=58.63  Aligned_cols=66  Identities=12%  Similarity=0.091  Sum_probs=50.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcch--------------HHhhhhccCCC----cccccccCcEEEEe
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTE--------------GTVTGSTKKGM----ATEDVITAKLIYDK  212 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~--------------a~~~a~~~~g~----~~~~v~~advvv~~  212 (224)
                      ...+++|||+|.+|....+.+...- ++.+|+|++++              .+.+++.....    ..+.+.++|+||.+
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVila   97 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNA   97 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEEEc
Confidence            6789999999999999999988753 35999999998              55555432222    45667899999999


Q ss_pred             ccccc
Q psy13395        213 YQAQH  217 (224)
Q Consensus       213 ~~~~~  217 (224)
                      +..+.
T Consensus        98 vp~~~  102 (245)
T 3dtt_A           98 TEGAS  102 (245)
T ss_dssp             SCGGG
T ss_pred             cCcHH
Confidence            87653

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.28  E-value=0.00024  Score=62.36  Aligned_cols=63  Identities=13%  Similarity=0.145  Sum_probs=50.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCCC----cccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|+|+|..|+.-+.++...-.  +.||||+++++++|+++...+    ..+ + ++||||.+|...
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~G  189 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKG  189 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTT
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccC
Confidence            57899999999999999999988642  599999999999998753211    122 5 899999999764

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.27  E-value=0.00035  Score=61.09  Aligned_cols=63  Identities=13%  Similarity=0.088  Sum_probs=51.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~  214 (224)
                      +..+++|||+|.+|....+.+...- ++.+|+|++++++.+.+..   ..-..+.+.++||||.++.
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp   86 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLS   86 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCS
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcC
Confidence            4578999999999999999988763 4599999999999988631   1225667789999999874

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.25  E-value=0.00046  Score=58.13  Aligned_cols=60  Identities=17%  Similarity=0.137  Sum_probs=48.7

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~  216 (224)
                      +++|||+|.+|..+.+.+...-  .+.+|+|++++++.+.+.. |+     ..+.+ ++|+||.++..+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~-g~~~~~~~~~~~-~~D~vi~~v~~~   68 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL-GVETSATLPELH-SDDVLILAVKPQ   68 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT-CCEEESSCCCCC-TTSEEEECSCHH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhc-CCEEeCCHHHHh-cCCEEEEEeCch
Confidence            6899999999999999998764  3599999999999887641 32     34567 999999998754

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.25  E-value=0.00035  Score=58.92  Aligned_cols=64  Identities=14%  Similarity=0.160  Sum_probs=50.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~  216 (224)
                      +..+++|||+|.+|..+++.+...-. +.+|+|++++++.+++.. |+     ..+.+.++|+||.++..+
T Consensus         2 ~~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~D~Vi~~v~~~   71 (259)
T 2ahr_A            2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-ALPYAMSHQDLIDQVDLVILGIKPQ   71 (259)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-TCCBCSSHHHHHHTCSEEEECSCGG
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc-CCEeeCCHHHHHhcCCEEEEEeCcH
Confidence            34589999999999999999876533 499999999999887642 22     345567999999998754

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.25  E-value=0.00059  Score=58.72  Aligned_cols=67  Identities=12%  Similarity=0.108  Sum_probs=52.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccC---C---Cccccc--ccCcEEEEecccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKK---G---MATEDV--ITAKLIYDKYQAQHS  218 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~---g---~~~~~v--~~advvv~~~~~~~~  218 (224)
                      ..++++|+|+|.+|+..++++..... +.+|+|++++++++++...   .   ...+++  .++||||.+|+....
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~  193 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS  193 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC
Confidence            46799999999999999999988753 4999999999998886421   1   122344  489999999987653

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.22  E-value=0.00041  Score=57.70  Aligned_cols=65  Identities=18%  Similarity=0.159  Sum_probs=51.2

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEE-EeCCcchHHhhhhccC----CCcccccccCcEEEEeccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKK-YNRGLTEGTVTGSTKK----GMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v-~~R~~~~a~~~a~~~~----g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..+++|||+|.+|...++.+...- .+.+ |+|+++++++++++..    .-..+++.++|+||.++..+.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~~   93 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYDS   93 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChHH
Confidence            458999999999999999988753 4555 9999999999876421    124566889999999987653

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.21  E-value=0.00036  Score=60.06  Aligned_cols=62  Identities=10%  Similarity=0.041  Sum_probs=50.1

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~~  215 (224)
                      .+++|||+|.+|....+.+...- ++.+|+|++++++.+.+..   ..-..+.+.++|+||.+...
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~   67 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLAD   67 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSS
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCC
Confidence            36999999999999999988763 4699999999999988641   12245667899999998764

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.10  E-value=0.00053  Score=62.51  Aligned_cols=66  Identities=15%  Similarity=0.201  Sum_probs=52.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCC--C----cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKG--M----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g--~----~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||+|.+|+..++.+...-  .+.+|+|+++++++++++...  +    ..+.+.++||||.+|++.+
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~  239 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH  239 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCC
Confidence            5789999999999999999988764  259999999998888764211  1    2345678999999998765

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.09  E-value=0.00042  Score=59.39  Aligned_cols=59  Identities=14%  Similarity=0.023  Sum_probs=47.0

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC---CCcccccccCcEEEEec
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKY  213 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~  213 (224)
                      +++|||+|.+|..+.+.+...- ++.+|+|++++++.+.+...   .-..+.+.++|+||.++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITML   64 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECC
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeC
Confidence            5899999999999999987653 45999999999998876411   11345577999999997

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.06  E-value=0.00078  Score=56.98  Aligned_cols=62  Identities=19%  Similarity=0.171  Sum_probs=49.8

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh-CC-cEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS-LK-LKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v-~~-i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~  216 (224)
                      .+++|||+|.+|..+.+.+... ++ +.+|+|++++++.+.+.. |+     ..+.+.++|+||.++..+
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~Dvvi~av~~~   79 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV-EAEYTTDLAEVNPYAKLYIVSLKDS   79 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT-TCEEESCGGGSCSCCSEEEECCCHH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc-CCceeCCHHHHhcCCCEEEEecCHH
Confidence            4799999999999999998876 34 489999999998887642 22     345667899999998654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.06  E-value=0.00076  Score=57.38  Aligned_cols=61  Identities=20%  Similarity=0.232  Sum_probs=48.7

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~~~  216 (224)
                      +++|||+|.+|..+.+.+..-+++.+|+|++++++.+.+..   .. ..+.+.++|+||.++...
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~   66 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTT   66 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSH
T ss_pred             eEEEEcccHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCCh
Confidence            68999999999999999887112499999999998887631   12 556678999999998754

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.00  E-value=0.00065  Score=59.31  Aligned_cols=64  Identities=11%  Similarity=0.096  Sum_probs=51.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~~  215 (224)
                      ...+++|||+|.+|....+.+... +++.+|+|++++++.+.+..   ..-..+.+.++||||.+...
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~   75 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLD   75 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCC
Confidence            356899999999999999998875 34699999999999988741   12256677899999998764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.00  E-value=0.00052  Score=58.94  Aligned_cols=59  Identities=14%  Similarity=0.068  Sum_probs=48.4

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEecc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~  214 (224)
                      .+++|||+|.+|..+.+.+...- ++.+|+|++++++.+.+.  |+     ..+.+.++|+||.++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA--GAETASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--TCEECSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC--CCeecCCHHHHHhCCCEEEEECC
Confidence            47999999999999999987752 359999999999888764  32     3455778999999997

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.00  E-value=0.0013  Score=56.37  Aligned_cols=64  Identities=16%  Similarity=0.046  Sum_probs=49.6

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhccC-----CCcccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTKK-----GMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~~~-----g~~~~~v~~advvv~~~~~~  216 (224)
                      ..+++|||+|.+|....+.+....   .+.+|+|++++++.+.+...     .-..+.+.++|+||.++..+
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~   77 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIK   77 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHH
Confidence            468999999999999999998763   34899999999887765211     11345678999999998754

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.99  E-value=0.00094  Score=59.32  Aligned_cols=66  Identities=15%  Similarity=0.217  Sum_probs=52.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCC---cchHHhhhhcc---CCC-------c-----ccccccCcEEEE
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRG---LTEGTVTGSTK---KGM-------A-----TEDVITAKLIYD  211 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~---~~~a~~~a~~~---~g~-------~-----~~~v~~advvv~  211 (224)
                      ..++++|+|+|..|+..+.++...-.  +.|+||+   .+++++++++.   .+.       .     .+.+.++||||.
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIIN  226 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTN  226 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEE
Confidence            57899999999999999999987543  5999999   88899988631   121       1     334679999999


Q ss_pred             eccccc
Q psy13395        212 KYQAQH  217 (224)
Q Consensus       212 ~~~~~~  217 (224)
                      +|....
T Consensus       227 aTp~Gm  232 (312)
T 3t4e_A          227 GTKVGM  232 (312)
T ss_dssp             CSSTTS
T ss_pred             CCcCCC
Confidence            998863

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.99  E-value=0.0012  Score=57.39  Aligned_cols=63  Identities=11%  Similarity=-0.066  Sum_probs=50.9

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc----CCCcccccccCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK----KGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~----~g~~~~~v~~advvv~~~~~  215 (224)
                      ..+++|||+|.+|....+.+...- ++.+|+|++++++.+.+..    ..-..+.+.++|+||.++..
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~   74 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVN   74 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCC
Confidence            468999999999999999988763 3599999999999988741    12245677899999998765

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.93  E-value=0.001  Score=57.73  Aligned_cols=62  Identities=13%  Similarity=0.076  Sum_probs=49.2

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEecc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~  214 (224)
                      ..+++|||+|.+|....+.+...- ++.+|+|++++++.+.+..   ..-..+.+.++|+||.++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCS
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCC
Confidence            367999999999999999987652 4599999999998887621   1124466779999999987

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.89  E-value=0.00086  Score=57.58  Aligned_cols=60  Identities=10%  Similarity=0.130  Sum_probs=48.7

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEecc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~  214 (224)
                      ..+++|||+|.+|..+.+.+...- ++.+|+|++++++.+.+.  |+     ..+.+.++|+||.++.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~D~vi~~vp   69 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQ--GAQACENNQKVAAASDIIFTSLP   69 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTT--TCEECSSHHHHHHHCSEEEECCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC--CCeecCCHHHHHhCCCEEEEECC
Confidence            468999999999999999987653 359999999999888764  32     3455778999999984

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.87  E-value=0.0018  Score=56.95  Aligned_cols=65  Identities=11%  Similarity=0.201  Sum_probs=50.8

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC---------CC----cccccccCcEEEEeccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK---------GM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~---------g~----~~~~v~~advvv~~~~~~~  217 (224)
                      ..+++|||+|.+|......+...- ++.+|+|++++++.+.+...         ++    ..+++.++|+||.++..++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~aDvVil~vk~~~   92 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEEIKKEDILVIAIPVQY   92 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGGCCTTEEEEECSCGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHHhcCCCEEEEECCHHH
Confidence            678999999999999999887763 46999999999998876421         12    2233789999999987653

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.87  E-value=0.001  Score=58.42  Aligned_cols=62  Identities=18%  Similarity=0.317  Sum_probs=49.0

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-----CcEEEeCCcc--hHHhhhhccCCC-----cccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-----KLKKYNRGLT--EGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-----~i~v~~R~~~--~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~  216 (224)
                      ..+++|||+|.+|......+...-     ++.+|+|+++  +++.+.+  .|+     ..+.+.++||||.++..+
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~--~G~~~~~~~~e~~~~aDvVilav~~~   95 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRK--MGVKLTPHNKETVQHSDVLFLAVKPH   95 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHH--HTCEEESCHHHHHHHCSEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHH--cCCEEeCChHHHhccCCEEEEEeCHH
Confidence            447999999999999999998753     4599999987  7777753  233     456677999999998755

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.85  E-value=0.0015  Score=58.13  Aligned_cols=65  Identities=11%  Similarity=0.081  Sum_probs=51.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCC---cchHHhhhhcc---CCC------------cccccccCcEEEE
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRG---LTEGTVTGSTK---KGM------------ATEDVITAKLIYD  211 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~---~~~a~~~a~~~---~g~------------~~~~v~~advvv~  211 (224)
                      ..++++|+|+|..|+..+.++...-.  +.|+||+   .+++++++++.   .+.            ..+.+.++||||.
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIIN  232 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTN  232 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEE
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEE
Confidence            57899999999999999999987643  5999999   89999888631   121            1234678999999


Q ss_pred             ecccc
Q psy13395        212 KYQAQ  216 (224)
Q Consensus       212 ~~~~~  216 (224)
                      +|.+.
T Consensus       233 aTp~G  237 (315)
T 3tnl_A          233 ATGVG  237 (315)
T ss_dssp             CSSTT
T ss_pred             CccCC
Confidence            99875

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.84  E-value=0.0016  Score=55.89  Aligned_cols=62  Identities=15%  Similarity=0.127  Sum_probs=49.7

Q ss_pred             CcEEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~  216 (224)
                      ..+++|||+ |.+|....+.+...- ++.+|+|++++++.+.+  .|+    ..+.+.++|+||.++..+
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~--~g~~~~~~~~~~~~aDvVi~av~~~   78 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG--MGIPLTDGDGWIDEADVVVLALPDN   78 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH--TTCCCCCSSGGGGTCSEEEECSCHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh--cCCCcCCHHHHhcCCCEEEEcCCch
Confidence            358999999 999999999987652 35999999999888865  232    456678999999998654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.80  E-value=0.001  Score=57.74  Aligned_cols=62  Identities=16%  Similarity=0.076  Sum_probs=48.3

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC---CCcccccccCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~~~  215 (224)
                      ..+++|||+|.+|....+.+... +++.+|+|++++++.+.+...   .-..+.+. +|+||.++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~   80 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLD   80 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCC
Confidence            35799999999999999998775 345999999999998876421   11344555 9999998873

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=96.77  E-value=0.0021  Score=56.56  Aligned_cols=63  Identities=17%  Similarity=0.149  Sum_probs=49.1

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCC-----cccccc--cCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGM-----ATEDVI--TAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~-----~~~~v~--~advvv~~~~~~  216 (224)
                      ..+++|||+|.+|..|++++...-.+   .||+|+++++++|+++. |.     ..+.+.  +.|+|+.+|...
T Consensus         4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-g~~~~~~~~~~l~~~~~D~V~i~tp~~   76 (344)
T 3euw_A            4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEAN-GAEAVASPDEVFARDDIDGIVIGSPTS   76 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTT-TCEEESSHHHHTTCSCCCEEEECSCGG
T ss_pred             ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc-CCceeCCHHHHhcCCCCCEEEEeCCch
Confidence            46899999999999999999885333   78999999999998753 22     233344  789999988653

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.75  E-value=0.0016  Score=57.17  Aligned_cols=64  Identities=9%  Similarity=0.074  Sum_probs=48.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhc----c-CCC----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGST----K-KGM----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~----~-~g~----~~~~v~~advvv~~~~~  215 (224)
                      .-++++|||+|.+|..-.+.+.+-+++.+|+|+++.++++.+.    . .++    ..+++.+||+||++.-.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~laaG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~aDlVieavpe   83 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIASKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEKVKDCDIVMEAVFE   83 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTTGGGCSEEEECCCS
T ss_pred             CCCeEEEEeeCHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHHHcCCCEEEEcCcC
Confidence            5789999999999999888887223459999999998877654    0 011    23458999999998643

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.66  E-value=0.00075  Score=57.93  Aligned_cols=63  Identities=8%  Similarity=0.124  Sum_probs=43.2

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhhhhccC-CC--cccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVTGSTKK-GM--ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~a~~~~-g~--~~~~v~~advvv~~~~~~~  217 (224)
                      +++|||+|.+|....+.+...+++ .+|+|++++++.+++... ..  ..+.+.++|+||.++..+.
T Consensus         4 ~I~iIG~G~mG~~la~~l~~~~~v~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~DvVilav~~~~   70 (276)
T 2i76_A            4 VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY   70 (276)
T ss_dssp             CCEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT
T ss_pred             eEEEEeCCHHHHHHHHHHHHcCcEEEEEeCCHHHHHHHHHHcCCccCCHHHHHhcCCEEEEeCChHH
Confidence            589999999999999987665456 699999999988875321 11  3345678999999987653

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.65  E-value=0.0024  Score=55.91  Aligned_cols=64  Identities=17%  Similarity=0.112  Sum_probs=48.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHH-HhCC--c-EEEeCCcchHHhhhhccCCC-----c-ccccc--cCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFH-ASLK--L-KKYNRGLTEGTVTGSTKKGM-----A-TEDVI--TAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~-~v~~--i-~v~~R~~~~a~~~a~~~~g~-----~-~~~v~--~advvv~~~~~~  216 (224)
                      +..+++|||+|.+|..|++++. ..-.  + .||+|+++++++++++. |.     . .+.+.  +.|+||.+|..+
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~-g~~~~~~~~~~~l~~~~~D~V~i~tp~~   82 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL-GVETTYTNYKDMIDTENIDAIFIVAPTP   82 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT-CCSEEESCHHHHHTTSCCSEEEECSCGG
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh-CCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            5679999999999999999988 4333  3 78999999999888753 22     2 23333  689999998754

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=96.60  E-value=0.0016  Score=56.74  Aligned_cols=65  Identities=9%  Similarity=-0.008  Sum_probs=49.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--c-EEEeCCcchHHhhhhcc--CCCcccccc--cCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--L-KKYNRGLTEGTVTGSTK--KGMATEDVI--TAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~--~g~~~~~v~--~advvv~~~~~~  216 (224)
                      +..+++|||+|.+|..|++++...-.  + .+|+|+++++++++++-  ..-..+.+.  +.|+||.+|..+
T Consensus         9 ~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~   80 (315)
T 3c1a_A            9 SPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPA   80 (315)
T ss_dssp             CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGG
T ss_pred             CcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChH
Confidence            45789999999999999999987533  3 79999999999887751  111233332  789999998754

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.58  E-value=0.0025  Score=56.35  Aligned_cols=64  Identities=20%  Similarity=0.230  Sum_probs=49.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCC-----ccccc--ccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGM-----ATEDV--ITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~-----~~~~v--~~advvv~~~~~~  216 (224)
                      ...+++|||+|.+|..|++++...-.+   .||+|+++++++|+++. |+     ..+.+  .+.|+|+.+|...
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~D~V~i~tp~~   77 (354)
T 3db2_A            4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRY-NCAGDATMEALLAREDVEMVIITVPND   77 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH-TCCCCSSHHHHHHCSSCCEEEECSCTT
T ss_pred             CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc-CCCCcCCHHHHhcCCCCCEEEEeCChH
Confidence            356899999999999999999875343   79999999999998752 22     23334  4689999988653

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=96.58  E-value=0.0012  Score=56.31  Aligned_cols=61  Identities=16%  Similarity=0.041  Sum_probs=47.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~  215 (224)
                      |..+++|||+|.+|..+.+.+...- ++.+|+ ++++++.+.+.  |+     ..+.+.++|+||.++..
T Consensus         2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~--g~~~~~~~~~~~~~~D~vi~~vp~   68 (295)
T 1yb4_A            2 NAMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSL--GAVNVETARQVTEFADIIFIMVPD   68 (295)
T ss_dssp             --CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTT--TCBCCSSHHHHHHTCSEEEECCSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHc--CCcccCCHHHHHhcCCEEEEECCC
Confidence            3458999999999999999987752 359999 99998888764  32     34557799999999844

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=96.57  E-value=0.0026  Score=55.60  Aligned_cols=62  Identities=11%  Similarity=0.088  Sum_probs=48.1

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCC----cccccc--cCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGM----ATEDVI--TAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~----~~~~v~--~advvv~~~~~~  216 (224)
                      .+++|||+|.+|..|++++...-.+   .||+|+++++++|+++. |+    ..+.+.  +.|+|+.+|...
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~   74 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAY-GCEVRTIDAIEAAADIDAVVICTPTD   74 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT-TCEECCHHHHHHCTTCCEEEECSCGG
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHh-CCCcCCHHHHhcCCCCCEEEEeCCch
Confidence            5799999999999999999875443   78999999999998753 32    233333  689999988643

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.56  E-value=0.0023  Score=56.35  Aligned_cols=63  Identities=16%  Similarity=0.166  Sum_probs=46.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---------c-EEEeCCcchHHhhhhccCCC-----ccccc-c--cCcEEEEec
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---------L-KKYNRGLTEGTVTGSTKKGM-----ATEDV-I--TAKLIYDKY  213 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---------i-~v~~R~~~~a~~~a~~~~g~-----~~~~v-~--~advvv~~~  213 (224)
                      ++-+++|||+|.+|+.|++++..+.+         + -|++++++++++|+++. |+     ..+++ .  +-|+|+-+|
T Consensus        24 kkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~-g~~~~y~d~~ell~~~~iDaV~Iat  102 (393)
T 4fb5_A           24 KPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEF-GFEKATADWRALIADPEVDVVSVTT  102 (393)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHH-TCSEEESCHHHHHHCTTCCEEEECS
T ss_pred             CCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHh-CCCeecCCHHHHhcCCCCcEEEECC
Confidence            46799999999999999999876532         3 89999999999999853 22     23333 2  468898887


Q ss_pred             cc
Q psy13395        214 QA  215 (224)
Q Consensus       214 ~~  215 (224)
                      -.
T Consensus       103 P~  104 (393)
T 4fb5_A          103 PN  104 (393)
T ss_dssp             CG
T ss_pred             Ch
Confidence            64

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=96.55  E-value=0.0023  Score=56.38  Aligned_cols=63  Identities=11%  Similarity=0.007  Sum_probs=47.9

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccC-----CCcccccc--cCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKK-----GMATEDVI--TAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~-----g~~~~~v~--~advvv~~~~~~  216 (224)
                      .+++|||+|.+|..|++++...-.+   .||+|+++++++++++..     .-..+.+.  +.|+|+.+|...
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   75 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTN   75 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCc
Confidence            4799999999999999999874333   789999999999987531     11233333  689999998654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.54  E-value=0.006  Score=44.20  Aligned_cols=64  Identities=9%  Similarity=0.048  Sum_probs=47.8

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhcc-----CCC-----cccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTK-----KGM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~-----~g~-----~~~~v~~advvv~~~~~~  216 (224)
                      ..+++|+|+|.+|+..++.+...-  .+.+++|++++.+.+.+..     ..+     ..+.+.++|+||.+++.+
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~   80 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFF   80 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGG
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCch
Confidence            468999999999999999988753  2389999999988876311     111     234556899999988643

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.52  E-value=0.0059  Score=53.73  Aligned_cols=64  Identities=11%  Similarity=0.014  Sum_probs=49.8

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhhccC-----CCccc-ccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGSTKK-----GMATE-DVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~~~~-----g~~~~-~v~~advvv~~~~~~  216 (224)
                      ..+++|||+|.+|....+.+...-.   +.+|+|++++++.+.+...     .-..+ .+.++|+||.++-.+
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~  105 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR  105 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHH
Confidence            4789999999999999999987643   5999999998877654311     11345 688999999988654

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.52  E-value=0.0051  Score=52.32  Aligned_cols=63  Identities=13%  Similarity=0.015  Sum_probs=48.0

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhccC-----CCcccccc-cCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTKK-----GMATEDVI-TAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~~~-----g~~~~~v~-~advvv~~~~~~  216 (224)
                      .+++|||+|.+|....+.+...-   .+.+|+|++++.+.+.+...     .-..+.+. ++|+||.++..+
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~   73 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR   73 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH
Confidence            47999999999999999998753   35899999998877654211     11346677 899999998765

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.51  E-value=0.0026  Score=55.72  Aligned_cols=62  Identities=8%  Similarity=0.077  Sum_probs=46.0

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCC--c-EEEeCCcchHHhhhhccCCC-----c-ccccc--cCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLK--L-KKYNRGLTEGTVTGSTKKGM-----A-TEDVI--TAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~~g~-----~-~~~v~--~advvv~~~~~  215 (224)
                      ..+++|||+|.+|..|++++...-.  + .||+|+++++++|+++. |+     . .+-+.  +.|+|+.+|..
T Consensus         5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~-~~~~~~~~~~~ll~~~~~D~V~i~tp~   77 (329)
T 3evn_A            5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKY-HLPKAYDKLEDMLADESIDVIYVATIN   77 (329)
T ss_dssp             CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CC-CCSCEESCHHHHHTCTTCCEEEECSCG
T ss_pred             ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHc-CCCcccCCHHHHhcCCCCCEEEECCCc
Confidence            4689999999999999999987644  3 79999999999998753 22     2 23333  68999998864

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=96.49  E-value=0.0034  Score=54.60  Aligned_cols=61  Identities=13%  Similarity=0.116  Sum_probs=46.1

Q ss_pred             EEEEEecCHhHHHH-HHHHHHhCCc---EEEeCCcchHHhhhhccCC---C-cccc-cc--cCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIH-AKAFHASLKL---KKYNRGLTEGTVTGSTKKG---M-ATED-VI--TAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~h-l~a~~~v~~i---~v~~R~~~~a~~~a~~~~g---~-~~~~-v~--~advvv~~~~~~  216 (224)
                      +++|||+|.+|+.| ++++.. ..+   .||+|+++++++|+++...   + ..++ +.  +.|+||.+|..+
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~   73 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNE   73 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGG
T ss_pred             eEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChh
Confidence            68999999999998 888887 433   7899999999999875311   1 2333 33  489999998754

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=96.48  E-value=0.0031  Score=54.60  Aligned_cols=64  Identities=9%  Similarity=0.102  Sum_probs=48.4

Q ss_pred             CcEEEEEecCHhHHH-HHHHHHHhCC--c-EEEeCCcchHHhhhhccC----CCcccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYI-HAKAFHASLK--L-KKYNRGLTEGTVTGSTKK----GMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~-hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~~----g~~~~~v~~advvv~~~~~~  216 (224)
                      ..+++|||+|.+|.. |++++...-.  + .||+|+++++++|+++..    .-..+.+.+.|+|+.+|...
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~   77 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTE   77 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGG
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcH
Confidence            468999999999996 8998876544  3 699999999999987421    11233344899999988654

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=96.47  E-value=0.004  Score=54.27  Aligned_cols=63  Identities=10%  Similarity=0.024  Sum_probs=47.9

Q ss_pred             cEEEEEecCHhHH-HHHHHHHHhCCc--EEEeCCcchHHhhhhccC--C-C--ccccc-ccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAY-IHAKAFHASLKL--KKYNRGLTEGTVTGSTKK--G-M--ATEDV-ITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~-~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~--g-~--~~~~v-~~advvv~~~~~~  216 (224)
                      .+++|||+|.+|. .|++++...-..  .||+|+++++++|+++..  . +  ..+.+ .+.|+|+.+|..+
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~   74 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATD   74 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGG
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCch
Confidence            4799999999998 599998765333  699999999999987421  1 1  23455 5789999998754

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.46  E-value=0.0025  Score=57.47  Aligned_cols=80  Identities=14%  Similarity=0.154  Sum_probs=47.7

Q ss_pred             hhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhC----------Cc-EEEeCCcchHHhhhhccCCC----cc
Q psy13395        136 AASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASL----------KL-KKYNRGLTEGTVTGSTKKGM----AT  200 (224)
Q Consensus       136 A~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~----------~i-~v~~R~~~~a~~~a~~~~g~----~~  200 (224)
                      |...+++..|.-+.-.+.-+++|||+|.+|+.|++++...-          .+ -|++++++++++|+++...-    ..
T Consensus         9 ~~~~~~~~~~~~~~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~   88 (412)
T 4gqa_A            9 SGVDLGTENLYFQSMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDW   88 (412)
T ss_dssp             ----------------CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSH
T ss_pred             cccccccccCccccccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCH
Confidence            33445665443220113469999999999999999998752          23 89999999999999853211    22


Q ss_pred             ccc---ccCcEEEEeccc
Q psy13395        201 EDV---ITAKLIYDKYQA  215 (224)
Q Consensus       201 ~~v---~~advvv~~~~~  215 (224)
                      +++   .+-|+|+-+|..
T Consensus        89 ~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           89 RELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             HHHHHCTTCCEEEECSCG
T ss_pred             HHHhcCCCCCEEEECCCc
Confidence            332   256899888754

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.44  E-value=0.0032  Score=55.39  Aligned_cols=62  Identities=10%  Similarity=0.111  Sum_probs=46.7

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCC-c---EEEeCCcchHHhhhhccC-CC----ccccc-c--cCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLK-L---KKYNRGLTEGTVTGSTKK-GM----ATEDV-I--TAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~-i---~v~~R~~~~a~~~a~~~~-g~----~~~~v-~--~advvv~~~~~  215 (224)
                      .+++|||+|.+|..|++++....+ +   .||+|+++++++++++.. ..    ..+++ .  +.|+|+.+|..
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~   76 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWG   76 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCc
Confidence            479999999999999999984333 3   799999999999987532 11    23333 3  37999998864

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.003  Score=58.86  Aligned_cols=64  Identities=13%  Similarity=0.096  Sum_probs=50.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCCC------------cccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKGM------------ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g~------------~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|+|+|.+|+.+++++.....  +.+++|++++++++++. .++            ..+.+.++|+||.++...
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~-~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~   99 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKP-SGSKAISLDVTDDSALDKVLADNDVVISLIPYT   99 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG-GTCEEEECCTTCHHHHHHHHHTSSEEEECSCGG
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-cCCcEEEEecCCHHHHHHHHcCCCEEEECCchh
Confidence            45789999999999999999987533  49999999999998764 221            124456899999999875

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=96.43  E-value=0.0027  Score=55.76  Aligned_cols=65  Identities=15%  Similarity=0.068  Sum_probs=49.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCC---C-cc-cccc--cCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKG---M-AT-EDVI--TAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g---~-~~-~~v~--~advvv~~~~~~  216 (224)
                      +..+++|||+|.+|..|++++...-.+   .||+|+++++++|+++...   + .. +.+.  +.|+|+.+|...
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   78 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQ   78 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGG
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCH
Confidence            356899999999999999999886443   6899999999999875321   1 22 3333  689999988654

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=96.42  E-value=0.0035  Score=55.41  Aligned_cols=64  Identities=16%  Similarity=0.185  Sum_probs=50.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---c-EEEeCCcchHHhhhhccCCC----cccc-cc--cCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---L-KKYNRGLTEGTVTGSTKKGM----ATED-VI--TAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~g~----~~~~-v~--~advvv~~~~~~  216 (224)
                      +..+++|||+|.+|..|++++....+   + .+|+|+++++++++++. |+    ..++ +.  +.|+|+.+|..+
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~D~V~i~tp~~   86 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT-GARGHASLTDMLAQTDADIVILTTPSG   86 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH-CCEEESCHHHHHHHCCCSEEEECSCGG
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc-CCceeCCHHHHhcCCCCCEEEECCCcH
Confidence            46799999999999999999998733   3 79999999999998753 32    2233 33  689999988654

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.41  E-value=0.0035  Score=55.53  Aligned_cols=65  Identities=14%  Similarity=0.235  Sum_probs=48.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--c-EEEeCCcchHHhhhhccC---CC----ccccc-c--cCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--L-KKYNRGLTEGTVTGSTKK---GM----ATEDV-I--TAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~~---g~----~~~~v-~--~advvv~~~~~~  216 (224)
                      +..+++|||+|.+|+.|++++...-.  + .|++|+++++++|+++..   ..    ..+++ .  +.|+|+.+|..+
T Consensus         5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   82 (362)
T 1ydw_A            5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS   82 (362)
T ss_dssp             -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG
T ss_pred             CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChH
Confidence            56789999999999999999887543  3 799999999999987532   11    23333 2  589999998654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.40  E-value=0.0045  Score=55.72  Aligned_cols=64  Identities=8%  Similarity=0.066  Sum_probs=50.7

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC---CCcccccccC---cEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK---GMATEDVITA---KLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~a---dvvv~~~~~~  216 (224)
                      ..+++|||+|.+|....+.+...- ++.+|+|++++++.|.+...   .-..+.+.++   ||||.++..+
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~   92 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA   92 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH
Confidence            468999999999999999988763 35999999999999987421   1245556678   9999988765

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=96.38  E-value=0.0036  Score=52.56  Aligned_cols=60  Identities=17%  Similarity=0.118  Sum_probs=44.3

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-----CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-----KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-----~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~  216 (224)
                      .+++|||+|.+|....+.+...-     ++.+|+|++++   +.-....-..+.+.++|+||.++..+
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~---~g~~~~~~~~~~~~~~D~vi~~v~~~   69 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN---TTLNYMSSNEELARHCDIIVCAVKPD   69 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS---SSSEECSCHHHHHHHCSEEEECSCTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc---CceEEeCCHHHHHhcCCEEEEEeCHH
Confidence            47999999999999999988764     35999999876   11011111345677999999998754

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.37  E-value=0.0039  Score=54.98  Aligned_cols=64  Identities=14%  Similarity=0.168  Sum_probs=49.6

Q ss_pred             CCcEEEEEecC-HhHHHHHHHHHHhCC---c-EEEeCCcchHHhhhhccCC---C-ccccc-c--cCcEEEEeccc
Q psy13395        152 KDLVLAIMGSG-AQAYIHAKAFHASLK---L-KKYNRGLTEGTVTGSTKKG---M-ATEDV-I--TAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG-~QA~~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~g---~-~~~~v-~--~advvv~~~~~  215 (224)
                      +..+++|||+| .+++.|++++....+   + .|++|+++++++|+++...   + ..+++ .  +.|+|+.+|..
T Consensus        17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   92 (340)
T 1zh8_A           17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV   92 (340)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred             CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence            78899999999 899999999987633   3 8999999999999875321   1 23333 2  57999998864

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.35  E-value=0.0049  Score=53.90  Aligned_cols=65  Identities=17%  Similarity=0.178  Sum_probs=48.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCC--cchHHhhhhcc---CCCcccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRG--LTEGTVTGSTK---KGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~--~~~a~~~a~~~---~g~~~~~v~~advvv~~~~~~  216 (224)
                      ...+++|||+|.+|....+.+...-  ++.+|+|+  +++.+.+.+..   ..-..+.+.++||||.+...+
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~   94 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQ   94 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTT
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCch
Confidence            3568999999999999999998874  45999997  46666665421   122456788999999987654

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.35  E-value=0.0044  Score=55.29  Aligned_cols=64  Identities=17%  Similarity=0.175  Sum_probs=48.7

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh--------CCcEEEeCCcc-----hHHhhhhcc------------CCC-----cccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS--------LKLKKYNRGLT-----EGTVTGSTK------------KGM-----ATED  202 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v--------~~i~v~~R~~~-----~a~~~a~~~------------~g~-----~~~~  202 (224)
                      ..+++|||+|.+|......+...        .++.+|+|+++     +++.+.+..            .++     ..++
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea  100 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV  100 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence            45799999999999999888765        45699999998     888776521            111     2345


Q ss_pred             cccCcEEEEecccc
Q psy13395        203 VITAKLIYDKYQAQ  216 (224)
Q Consensus       203 v~~advvv~~~~~~  216 (224)
                      +.++|+||.++..+
T Consensus       101 ~~~aDvVilav~~~  114 (375)
T 1yj8_A          101 INDADLLIFIVPCQ  114 (375)
T ss_dssp             HTTCSEEEECCCHH
T ss_pred             HcCCCEEEEcCCHH
Confidence            77999999998654

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.34  E-value=0.0024  Score=55.23  Aligned_cols=66  Identities=17%  Similarity=0.140  Sum_probs=52.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhccCC---------C----cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKG---------M----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~~g---------~----~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|+|+|.+|+..++++...-.+.+|+|+.++++.+++....         +    ..+.+.++||||.+++...
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L~~~G~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~~  205 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGM  205 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSSEEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTC
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCCC
Confidence            4689999999999999999998766348999999999888763210         0    1466789999999998765

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.27  E-value=0.0043  Score=58.26  Aligned_cols=64  Identities=9%  Similarity=0.029  Sum_probs=50.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhh-cc--CCC-----ccccccc---CcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGS-TK--KGM-----ATEDVIT---AKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~-~~--~g~-----~~~~v~~---advvv~~~~~  215 (224)
                      -+.+++|||+|.+|....+.+... +++.+|||++++++++.+ +.  .|+     ..+.+.+   +|+||.+...
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~   84 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKA   84 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCC
Confidence            367899999999999999998875 356999999999999987 31  233     2333444   9999998866

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.27  E-value=0.0047  Score=54.80  Aligned_cols=63  Identities=19%  Similarity=0.189  Sum_probs=47.5

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~  216 (224)
                      ..+++|||+|.+|..+.+.+...- ++.+|+|++++..+.+.+ .|+    ..+.+.++|+||.++-.+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~-~G~~~~~~~e~~~~aDvVilavp~~   83 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEA-HGLKVADVKTAVAAADVVMILTPDE   83 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHH-TTCEEECHHHHHHTCSEEEECSCHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHH-CCCEEccHHHHHhcCCEEEEeCCcH
Confidence            457999999999999999988753 358999998775444432 233    345677999999988654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.27  E-value=0.0055  Score=53.82  Aligned_cols=64  Identities=14%  Similarity=0.171  Sum_probs=46.3

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCc---chHHhhhhc--cCC----CcccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGL---TEGTVTGST--KKG----MATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~---~~a~~~a~~--~~g----~~~~~v~~advvv~~~~~~  216 (224)
                      ..+++|||+|.+|....+.+...-  ++.+|+|++   +++++..++  ..|    -..+.+.++||||.+...+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~~~~s~~e~~~~aDvVi~avp~~   98 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGIACADVVLSLVVGA   98 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTCEEESSGGGGGGCSEEEECCCGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCCCCCCHHHHHhcCCEEEEecCCH
Confidence            357999999999999999998864  459999998   233333221  123    2456678999999987654

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.26  E-value=0.0035  Score=58.25  Aligned_cols=62  Identities=16%  Similarity=0.099  Sum_probs=48.3

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC--CC-----ccccccc---CcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK--GM-----ATEDVIT---AKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~--g~-----~~~~v~~---advvv~~~~~  215 (224)
                      .+++|||+|.+|..+.+.+... +++.+|+|++++++++.++..  |+     ..+.+.+   +|+||.++..
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~   78 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQA   78 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCT
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccC
Confidence            4699999999999999998865 345999999999999887421  33     2333444   9999999876

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.23  E-value=0.0064  Score=53.99  Aligned_cols=65  Identities=9%  Similarity=0.065  Sum_probs=48.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---c-EEEeCCcchHHhhhhccC-CC----cccc-cc--cCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---L-KKYNRGLTEGTVTGSTKK-GM----ATED-VI--TAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~-g~----~~~~-v~--~advvv~~~~~~  216 (224)
                      ...+++|||+|.+|..|++++....+   + .||+|+++++++|+++.. +.    ..++ +.  +.|+|+.+|...
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~   98 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNE   98 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGG
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcH
Confidence            35689999999999999999984443   3 799999999999987532 12    2233 33  479999988653

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=96.23  E-value=0.0034  Score=55.19  Aligned_cols=62  Identities=13%  Similarity=0.137  Sum_probs=46.9

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC---------Cc-EEEeCCcchHHhhhhccCCC-----ccccc---ccCcEEEEecc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL---------KL-KKYNRGLTEGTVTGSTKKGM-----ATEDV---ITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~---------~i-~v~~R~~~~a~~~a~~~~g~-----~~~~v---~~advvv~~~~  214 (224)
                      .-+++|||+|.+|+.|++++...-         .+ -|++++++++++++++. |+     ..+++   .+-|+|+-+|.
T Consensus         6 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~-g~~~~~~d~~~ll~~~~iDaV~I~tP   84 (390)
T 4h3v_A            6 NLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKL-GWSTTETDWRTLLERDDVQLVDVCTP   84 (390)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHH-TCSEEESCHHHHTTCTTCSEEEECSC
T ss_pred             cCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHc-CCCcccCCHHHHhcCCCCCEEEEeCC
Confidence            358999999999999999987752         23 79999999999999853 22     22333   24688888875


Q ss_pred             c
Q psy13395        215 A  215 (224)
Q Consensus       215 ~  215 (224)
                      .
T Consensus        85 ~   85 (390)
T 4h3v_A           85 G   85 (390)
T ss_dssp             G
T ss_pred             h
Confidence            4

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.23  E-value=0.011  Score=45.82  Aligned_cols=66  Identities=14%  Similarity=0.107  Sum_probs=48.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhh-hcc----CC-C-----ccc-ccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTG-STK----KG-M-----ATE-DVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a-~~~----~g-~-----~~~-~v~~advvv~~~~~~~  217 (224)
                      ...+++|||+|..|...++.+...- ++.+|+|++++++.+. +..    .+ .     ..+ .+.++|+||.++....
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~   96 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDS   96 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcH
Confidence            5678999999999999999887643 3599999999988776 211    01 1     112 2678999999998643

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.19  E-value=0.0058  Score=53.64  Aligned_cols=63  Identities=13%  Similarity=0.106  Sum_probs=46.8

Q ss_pred             CCcEEEEEecCHhHHHH-HHHHHHhCCc---EEEeCCcchHHhhhhccCCC-----ccccc---ccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIH-AKAFHASLKL---KKYNRGLTEGTVTGSTKKGM-----ATEDV---ITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~h-l~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~-----~~~~v---~~advvv~~~~~  215 (224)
                      .--+++|||+|.+|+.| +.++...-.+   -|++|+++++++|+++. |+     ..+++   .+-|+|+-+|-.
T Consensus        22 ~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~-g~~~~y~d~~ell~~~~iDaV~I~tP~   96 (350)
T 4had_A           22 SMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRF-SVPHAFGSYEEMLASDVIDAVYIPLPT   96 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHH-TCSEEESSHHHHHHCSSCSEEEECSCG
T ss_pred             CccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc-CCCeeeCCHHHHhcCCCCCEEEEeCCC
Confidence            56799999999999876 6676665433   79999999999999853 22     23333   246999888864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.19  E-value=0.0067  Score=48.25  Aligned_cols=64  Identities=13%  Similarity=-0.028  Sum_probs=48.3

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh--CCcEEEeCCcchHHhhhhcc----CC--C----cccc--cccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS--LKLKKYNRGLTEGTVTGSTK----KG--M----ATED--VITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v--~~i~v~~R~~~~a~~~a~~~----~g--~----~~~~--v~~advvv~~~~~~  216 (224)
                      ..+++|+|+|.+|...++.+...  .++.+|++++++.+.+.+..    .|  .    ..++  +.++|+||.++...
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~  116 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHH  116 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCCh
Confidence            45799999999999999999876  35699999999988775421    11  1    1232  67899999988754

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.19  E-value=0.0052  Score=55.13  Aligned_cols=64  Identities=11%  Similarity=0.009  Sum_probs=50.4

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC------CC-----------cccccccCcEEEEecc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK------GM-----------ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~------g~-----------~~~~v~~advvv~~~~  214 (224)
                      ..+++|||+|.+|......+...- ++.+|+|++++++.+.+...      |+           ..+++.++|+||.++-
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp  108 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP  108 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence            457999999999999999888763 46999999999888876321      21           2356789999999987


Q ss_pred             cc
Q psy13395        215 AQ  216 (224)
Q Consensus       215 ~~  216 (224)
                      .|
T Consensus       109 ~~  110 (356)
T 3k96_A          109 SF  110 (356)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.19  E-value=0.0086  Score=51.97  Aligned_cols=62  Identities=18%  Similarity=0.190  Sum_probs=48.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC-------cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM-------ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~-------~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||+|.+|+..++.+...- .+.+|+|++++.+.+.+  .|.       ..+.+.++|+|+.++..
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~--~g~~~~~~~~l~~~l~~aDvVi~~~p~  225 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITE--MGLVPFHTDELKEHVKDIDICINTIPS  225 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--TTCEEEEGGGHHHHSTTCSEEEECCSS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--CCCeEEchhhHHHHhhCCCEEEECCCh
Confidence            5789999999999999999887543 24999999988765543  121       34556799999999875

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=96.18  E-value=0.0069  Score=52.61  Aligned_cols=62  Identities=10%  Similarity=0.145  Sum_probs=47.5

Q ss_pred             CcEEEEEecCHhHHH-HHHHHHHhCC--c-EEEeCCcchHHhhhhccCCC----ccccc-ccCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYI-HAKAFHASLK--L-KKYNRGLTEGTVTGSTKKGM----ATEDV-ITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~-hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~~g~----~~~~v-~~advvv~~~~~  215 (224)
                      ..+++|||+|.+|+. |++++...-.  + .+|+|+++++++|+++. |+    ..+++ .+.|+|+.+|..
T Consensus         5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~-g~~~~~~~~~l~~~~D~V~i~tp~   75 (319)
T 1tlt_A            5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW-RIPYADSLSSLAASCDAVFVHSST   75 (319)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH-TCCBCSSHHHHHTTCSEEEECSCT
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc-CCCccCcHHHhhcCCCEEEEeCCc
Confidence            468999999999996 9998876433  3 69999999999988752 22    22344 478999999874

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.16  E-value=0.01  Score=50.21  Aligned_cols=60  Identities=17%  Similarity=0.070  Sum_probs=46.6

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC------cccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM------ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~------~~~~v~~advvv~~~~~~  216 (224)
                      +++|||+|.+|..+.+.+...- .+.+|+|++++++.+.+.  |+      ..+++.++|+||.++..+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~D~vi~av~~~   68 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER--QLVDEAGQDLSLLQTAKIIFLCTPIQ   68 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--TSCSEEESCGGGGTTCSEEEECSCHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhC--CCCccccCCHHHhCCCCEEEEECCHH
Confidence            6899999999999999988753 359999999998887642  22      222337899999998764

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.15  E-value=0.0053  Score=54.41  Aligned_cols=64  Identities=13%  Similarity=0.115  Sum_probs=48.5

Q ss_pred             CCcEEEEEecCHhHH-HHHHHHHHhCCc---EEEeCCcchHHhhhhccCCC----cccccc---cCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAY-IHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGM----ATEDVI---TAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~-~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~----~~~~v~---~advvv~~~~~~  216 (224)
                      ...+++|||+|.+|+ .|++++...-.+   .||+|+++++++|+++. |+    ..+++.   +.|+|+.+|...
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-g~~~~~~~~~ll~~~~~D~V~i~tp~~  100 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF-GGEPVEGYPALLERDDVDAVYVPLPAV  100 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH-CSEEEESHHHHHTCTTCSEEEECCCGG
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc-CCCCcCCHHHHhcCCCCCEEEECCCcH
Confidence            457899999999998 799998875333   79999999999998753 32    223332   579999988643

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.15  E-value=0.0044  Score=55.29  Aligned_cols=67  Identities=6%  Similarity=-0.007  Sum_probs=47.4

Q ss_pred             CCcEEEEEecCHh-HHHHHHHHHHhCC-cEEEeCC----cchHHhhhhccC-C-----C----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQ-AYIHAKAFHASLK-LKKYNRG----LTEGTVTGSTKK-G-----M----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~Q-A~~hl~a~~~v~~-i~v~~R~----~~~a~~~a~~~~-g-----~----~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||+|.+ |+...+.+....- +++.+|+    .++++.|+.... .     .    ..+.+.+|||||++|++
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~  255 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPS  255 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECCCC
Confidence            6899999999964 8888777766543 3777887    444555554211 1     1    35678899999999998


Q ss_pred             ccc
Q psy13395        216 QHS  218 (224)
Q Consensus       216 ~~~  218 (224)
                      .|-
T Consensus       256 p~~  258 (320)
T 1edz_A          256 ENY  258 (320)
T ss_dssp             TTC
T ss_pred             Ccc
Confidence            763

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.14  E-value=0.0058  Score=54.32  Aligned_cols=63  Identities=8%  Similarity=0.022  Sum_probs=47.0

Q ss_pred             CcEEEEEecCHhHHH-HHHHHHHhCCc---EEEeCCcchHHhhhhccCCC----ccccc-c--cCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYI-HAKAFHASLKL---KKYNRGLTEGTVTGSTKKGM----ATEDV-I--TAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~-hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~----~~~~v-~--~advvv~~~~~  215 (224)
                      ..+++|||+|.+|.. |++++...-.+   .||+|+++++++|+++..+.    ..+++ .  +-|+|+.+|..
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   78 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPP   78 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCH
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCc
Confidence            468999999999985 89998776443   79999999999999864332    23333 3  34999988754

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.14  E-value=0.0044  Score=57.83  Aligned_cols=63  Identities=13%  Similarity=0.099  Sum_probs=49.3

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC--CC-----ccccccc---CcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK--GM-----ATEDVIT---AKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~--g~-----~~~~v~~---advvv~~~~~  215 (224)
                      .++++|||+|.+|....+.+... +++.+|+|++++++++.++..  |+     ..+.+.+   +|+||.+...
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~   88 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKA   88 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCS
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCC
Confidence            45799999999999999998865 346999999999999987431  33     2344555   9999999876

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.11  E-value=0.0047  Score=54.12  Aligned_cols=62  Identities=13%  Similarity=0.160  Sum_probs=47.7

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCC----c-EEEeCCcchHHhhhhccCCC-----cccccc---cCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLK----L-KKYNRGLTEGTVTGSTKKGM-----ATEDVI---TAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~----i-~v~~R~~~~a~~~a~~~~g~-----~~~~v~---~advvv~~~~~~  216 (224)
                      .+++|||+|.+|+.|++++...-.    + .||+|+++++++|+++. |+     ..+++.   +.|+|+.+|...
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~-~~~~~~~~~~~ll~~~~vD~V~i~tp~~   77 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKH-DIPKAYGSYEELAKDPNVEVAYVGTQHP   77 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHH-TCSCEESSHHHHHHCTTCCEEEECCCGG
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHc-CCCcccCCHHHHhcCCCCCEEEECCCcH
Confidence            479999999999999999987532    3 89999999999999853 22     223332   589999988643

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.05  E-value=0.0049  Score=54.92  Aligned_cols=64  Identities=9%  Similarity=0.022  Sum_probs=49.9

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhccC----CC-----cccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKK----GM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~~----g~-----~~~~v~~advvv~~~~~~  216 (224)
                      ..+++|||+|.+|+..++.+..-..+.+++|+.++++++.+...    .+     ..+.+.++||||.++...
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~   88 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF   88 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             ccEEEEECCCHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence            45799999999999999998776566999999998887765211    22     355678999999998754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.04  E-value=0.011  Score=45.30  Aligned_cols=66  Identities=14%  Similarity=-0.012  Sum_probs=50.0

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc----CC--C-----cccccccCcEEEEecccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK----KG--M-----ATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~----~g--~-----~~~~v~~advvv~~~~~~~~  218 (224)
                      ..+++|+|+|..|+..++.+...- ++.++++++++.+.+.+..    .|  .     ....+.+||+||.++.....
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~   84 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYE   84 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHH
Confidence            468999999999999999988743 4599999999988876521    11  1     12346799999999886543

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.04  E-value=0.0089  Score=51.37  Aligned_cols=64  Identities=13%  Similarity=0.090  Sum_probs=48.2

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc---------cCC--------------C-----ccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST---------KKG--------------M-----ATEDV  203 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~---------~~g--------------~-----~~~~v  203 (224)
                      .++++|||+|.+|....+.+...- ++.+|+|++++++.+.+.         ..|              +     ..+++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~   83 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV   83 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence            468999999999999998887653 359999999988776543         001              1     23467


Q ss_pred             ccCcEEEEecccc
Q psy13395        204 ITAKLIYDKYQAQ  216 (224)
Q Consensus       204 ~~advvv~~~~~~  216 (224)
                      .++|+||.+...+
T Consensus        84 ~~aDlVi~av~~~   96 (283)
T 4e12_A           84 KDADLVIEAVPES   96 (283)
T ss_dssp             TTCSEEEECCCSC
T ss_pred             ccCCEEEEeccCc
Confidence            8999999987654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.99  E-value=0.012  Score=43.80  Aligned_cols=64  Identities=13%  Similarity=0.127  Sum_probs=46.8

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc-----CC-C-c-----ccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK-----KG-M-A-----TEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~-----~g-~-~-----~~~v~~advvv~~~~~~  216 (224)
                      ..+++|+|+|..|...++.+...- ++.+|+|++++.+.+.+..     .+ . .     .+.+.++|+||.++...
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   80 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE   80 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCc
Confidence            457999999999999999987753 3499999999887776421     11 1 1     12367899999998754

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.96  E-value=0.01  Score=51.65  Aligned_cols=64  Identities=9%  Similarity=-0.023  Sum_probs=49.1

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhcc------C--C-----CcccccccCcEEEEeccccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGSTK------K--G-----MATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~~------~--g-----~~~~~v~~advvv~~~~~~~  217 (224)
                      .+++|||+|.+|...+..+...-   .+.+|+|++++++.++...      .  .     -..+++.++|+||.+++.+.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~aDvViiav~~~~   81 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCHHHhCCCCEEEEecCCcc
Confidence            36999999999999888887664   3599999998887766310      0  1     13477889999999998754

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=95.94  E-value=0.01  Score=55.27  Aligned_cols=63  Identities=11%  Similarity=0.074  Sum_probs=48.6

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhh-cc--CCC----ccccc----ccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGS-TK--KGM----ATEDV----ITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~-~~--~g~----~~~~v----~~advvv~~~~~~  216 (224)
                      .+++|||+|.+|......+... +++.+|+|++++++.+.+ +.  .|+    ..+++    .++|+||.++...
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~   77 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAG   77 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTT
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCCh
Confidence            3699999999999999998875 346999999999999987 21  233    23333    3899999998763

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.92  E-value=0.0043  Score=54.98  Aligned_cols=62  Identities=15%  Similarity=0.136  Sum_probs=47.4

Q ss_pred             EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC------------CC-----cccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK------------GM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~------------g~-----~~~~v~~advvv~~~~~~  216 (224)
                      +++|||+|.+|......+... +++.+|+|++++++.+.+...            ++     ..+++.++|+||.++..+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~~   96 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQ   96 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCChH
Confidence            799999999999999888754 235999999999888875320            11     234577899999988654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.92  E-value=0.0044  Score=50.33  Aligned_cols=63  Identities=10%  Similarity=0.060  Sum_probs=47.6

Q ss_pred             EEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc------CCC----cccccccCcEEEEeccccc
Q psy13395        155 VLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK------KGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~------~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      +++||| +|.+|...++.+...- .+.+|+|++++++.+.+..      ..+    ..+.+.++|+||.++..+.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~~~   76 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEH   76 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCChhh
Confidence            689999 9999999999987643 3599999999888776531      112    2355678999999887543

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=95.90  E-value=0.011  Score=51.86  Aligned_cols=64  Identities=13%  Similarity=0.088  Sum_probs=48.0

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh--------CCcEEEeCCcc-----hHHhhhhcc------------CCC-----ccccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS--------LKLKKYNRGLT-----EGTVTGSTK------------KGM-----ATEDV  203 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v--------~~i~v~~R~~~-----~a~~~a~~~------------~g~-----~~~~v  203 (224)
                      .+++|||+|.+|......+...        .++.+|+|+++     +++.+.+..            .++     ..+++
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAA   88 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHH
Confidence            5899999999999999988765        34699999998     777765421            011     13457


Q ss_pred             ccCcEEEEeccccc
Q psy13395        204 ITAKLIYDKYQAQH  217 (224)
Q Consensus       204 ~~advvv~~~~~~~  217 (224)
                      .++|+||.++-.++
T Consensus        89 ~~aD~Vilav~~~~  102 (354)
T 1x0v_A           89 EDADILIFVVPHQF  102 (354)
T ss_dssp             TTCSEEEECCCGGG
T ss_pred             cCCCEEEEeCCHHH
Confidence            78999999987653

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=95.83  E-value=0.011  Score=49.71  Aligned_cols=62  Identities=11%  Similarity=0.090  Sum_probs=46.0

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeC--CcchHHhhhhcc-CCCcccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNR--GLTEGTVTGSTK-KGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R--~~~~a~~~a~~~-~g~~~~~v~~advvv~~~~~~  216 (224)
                      +++|||+|.+|....+.+...- ++.+|+|  +++.++.+.+.. ..-..+.+.++|+||.++..+
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~aDvvi~~v~~~   67 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPG   67 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGG
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCcCCHHHHHhcCCEEEEECCCH
Confidence            6899999999999999987652 3578888  666777665521 012345567999999998765

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=95.81  E-value=0.0099  Score=50.95  Aligned_cols=64  Identities=13%  Similarity=0.019  Sum_probs=48.5

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh-------CCcEEEeCCcchHHhhhh-ccC------C----------CcccccccCcE
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS-------LKLKKYNRGLTEGTVTGS-TKK------G----------MATEDVITAKL  208 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v-------~~i~v~~R~~~~a~~~a~-~~~------g----------~~~~~v~~adv  208 (224)
                      ..+++|||+|.+|......+...       .++.+|+| +++.+.+.+ ...      |          ...+++.++|+
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~   86 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDY   86 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCE
Confidence            45899999999999999988876       34699999 788887765 210      1          12345678999


Q ss_pred             EEEeccccc
Q psy13395        209 IYDKYQAQH  217 (224)
Q Consensus       209 vv~~~~~~~  217 (224)
                      ||.++..++
T Consensus        87 vil~vk~~~   95 (317)
T 2qyt_A           87 ILFCTKDYD   95 (317)
T ss_dssp             EEECCSSSC
T ss_pred             EEEecCccc
Confidence            999987764

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=95.80  E-value=0.016  Score=50.51  Aligned_cols=63  Identities=13%  Similarity=0.074  Sum_probs=38.4

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCC-cccccccCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGM-ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~-~~~~v~~advvv~~~~~  215 (224)
                      ..+++|||+|.+|+.|++++...-.+   -+|+|++++++.+.-....+ ...+..+.|+||.+|..
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~~~~~~~l~~~~~~DvViiatp~   75 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQLESVDVALVCSPS   75 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------CCTTSCEESSGGGSSSCCEEEECSCH
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCCcCCHHHHHhCCCCCEEEECCCc
Confidence            56899999999999999999874333   58999999877521110001 11223688999999864

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=95.79  E-value=0.012  Score=53.85  Aligned_cols=65  Identities=11%  Similarity=0.142  Sum_probs=48.5

Q ss_pred             CCcEEEEEecCHhHH-HHHHHHHHhCC--c-EEEeCCcchHHhhhhccC-------CC-ccccc-c--cCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAY-IHAKAFHASLK--L-KKYNRGLTEGTVTGSTKK-------GM-ATEDV-I--TAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~-~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~~-------g~-~~~~v-~--~advvv~~~~~~  216 (224)
                      +..+++|||+|.+|+ .|++++...-.  + .|++++++++++++++..       .+ ..+++ .  +.|+||.+|..+
T Consensus        82 ~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~  161 (433)
T 1h6d_A           82 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS  161 (433)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred             CceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCch
Confidence            567999999999997 89999876433  3 799999999999887421       11 23343 3  689999988653

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=95.77  E-value=0.01  Score=56.11  Aligned_cols=62  Identities=18%  Similarity=0.144  Sum_probs=45.3

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh-----CC--cEEEeCCcchHHhhhhccCCC---------cccccccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS-----LK--LKKYNRGLTEGTVTGSTKKGM---------ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v-----~~--i~v~~R~~~~a~~~a~~~~g~---------~~~~v~~advvv~~~~~~  216 (224)
                      ++|+|||+|.||..+++.+...     +.  +.++.|..++..+.+.. .|+         ..+++.+|||||.++-.+
T Consensus        55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e-~G~~v~d~ta~s~aEAa~~ADVVILaVP~~  132 (525)
T 3fr7_A           55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARA-AGFTEESGTLGDIWETVSGSDLVLLLISDA  132 (525)
T ss_dssp             SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHH-TTCCTTTTCEEEHHHHHHHCSEEEECSCHH
T ss_pred             CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHH-CCCEEecCCCCCHHHHHhcCCEEEECCChH
Confidence            7899999999999999999987     13  36677765554444432 122         357788999999988654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.74  E-value=0.014  Score=50.93  Aligned_cols=64  Identities=16%  Similarity=0.079  Sum_probs=48.2

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc-C---C-----------C---cccccccCcEEEEecc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK-K---G-----------M---ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~-~---g-----------~---~~~~v~~advvv~~~~  214 (224)
                      .+++|||+|.+|......+...- ++.+|+|++++++.+.+.. .   +           .   ..+.+.++|+||.++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            57999999999999999887653 3599999999988886531 0   0           0   1234678999999987


Q ss_pred             ccc
Q psy13395        215 AQH  217 (224)
Q Consensus       215 ~~~  217 (224)
                      .+.
T Consensus        85 ~~~   87 (359)
T 1bg6_A           85 AIH   87 (359)
T ss_dssp             GGG
T ss_pred             chH
Confidence            653

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.71  E-value=0.013  Score=53.50  Aligned_cols=64  Identities=9%  Similarity=0.100  Sum_probs=48.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--c-EEEeCCcchHHhhhhc--cCCC-----------cccccc---cCcEEEEe
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--L-KKYNRGLTEGTVTGST--KKGM-----------ATEDVI---TAKLIYDK  212 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~--~~g~-----------~~~~v~---~advvv~~  212 (224)
                      +..+++|||+|.+|..|++++...-.  + .||+|++++++++++.  ..|+           ..+++.   +.|+|+.+
T Consensus        19 ~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~   98 (444)
T 2ixa_A           19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVS   98 (444)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEEC
T ss_pred             CCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEc
Confidence            56799999999999999999886533  3 8999999999988763  2231           223333   47999988


Q ss_pred             ccc
Q psy13395        213 YQA  215 (224)
Q Consensus       213 ~~~  215 (224)
                      |..
T Consensus        99 tp~  101 (444)
T 2ixa_A           99 SPW  101 (444)
T ss_dssp             CCG
T ss_pred             CCc
Confidence            864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.67  E-value=0.019  Score=48.85  Aligned_cols=63  Identities=17%  Similarity=0.107  Sum_probs=46.5

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC-----------CC---cc-cc---cccCcEEEEecc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK-----------GM---AT-ED---VITAKLIYDKYQ  214 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~-----------g~---~~-~~---v~~advvv~~~~  214 (224)
                      .+++|||+|.+|......+...- ++.+|+|++++.+.+.+...           .+   .. +.   +.++|+||.++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            47999999999999999887753 45999999999888765310           01   11 22   238999999987


Q ss_pred             cc
Q psy13395        215 AQ  216 (224)
Q Consensus       215 ~~  216 (224)
                      .+
T Consensus        84 ~~   85 (316)
T 2ew2_A           84 AQ   85 (316)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.66  E-value=0.0091  Score=50.37  Aligned_cols=63  Identities=14%  Similarity=0.168  Sum_probs=47.7

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc-CC---------CcccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK-KG---------MATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~-~g---------~~~~~v~~advvv~~~~~~~  217 (224)
                      +++|||+|.+|......+...- ++.+|+|++++.+.+.... .|         -..+++.++|+||.++..+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~   75 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ   75 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHh
Confidence            6899999999999998887753 3599999998877665421 12         12456778999999987754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.65  E-value=0.013  Score=44.53  Aligned_cols=65  Identities=9%  Similarity=0.008  Sum_probs=48.3

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC----C-C-c-----ccccccCcEEEEeccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK----G-M-A-----TEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~----g-~-~-----~~~v~~advvv~~~~~~~  217 (224)
                      ..+++|+|+|..|+..++.+...- ++.++++++++.+.+.+...    | . .     ...+.++|+||.+++...
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~   82 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDE   82 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHH
Confidence            457999999999999999988752 45999999999888765311    1 1 1     223568999999988543

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=95.65  E-value=0.0085  Score=54.19  Aligned_cols=61  Identities=11%  Similarity=0.072  Sum_probs=45.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---c-EEEeCCcchHHhhhhccCCC-----cccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---L-KKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~  214 (224)
                      ...+|+|||+| .|+.|++++....+   + -|++|+++++++|+++. |+     ..+-+.+-|+|+.+|.
T Consensus         6 ~~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~-gv~~~~~~~~l~~~~D~v~i~~p   75 (372)
T 4gmf_A            6 PKQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAF-GIPLYTSPEQITGMPDIACIVVR   75 (372)
T ss_dssp             -CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHT-TCCEESSGGGCCSCCSEEEECCC
T ss_pred             CCCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHh-CCCEECCHHHHhcCCCEEEEECC
Confidence            46899999999 69999999887653   3 79999999999999853 43     2223335677776664

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.64  E-value=0.014  Score=50.36  Aligned_cols=40  Identities=10%  Similarity=-0.040  Sum_probs=32.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhh
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVT  191 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~  191 (224)
                      +.++++|||+|.+|......+... +++.+|+|++++++.+
T Consensus        14 ~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           14 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKS   54 (302)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            357899999999999888887765 3459999999887654

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.64  E-value=0.01  Score=53.05  Aligned_cols=63  Identities=17%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccCCC-----cccccc----cCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKKGM-----ATEDVI----TAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~g~-----~~~~v~----~advvv~~~~~~  216 (224)
                      ...+++|||+|.+|....+.+... +.+.+|+|++++++.+.+.  |+     ..+.+.    ++||||.++-.+
T Consensus         7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~--G~~~~~~~~e~~~~a~~~aDlVilavP~~   79 (341)
T 3ktd_A            7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDE--GFDVSADLEATLQRAAAEDALIVLAVPMT   79 (341)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHT--TCCEESCHHHHHHHHHHTTCEEEECSCHH
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--CCeeeCCHHHHHHhcccCCCEEEEeCCHH
Confidence            567899999999999999998876 3469999999988776542  32     223333    469999987643

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=94.59  E-value=0.002  Score=53.12  Aligned_cols=64  Identities=13%  Similarity=-0.004  Sum_probs=46.6

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC--CCcccccccCcEEEEeccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK--GMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~--g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..+++|||+|.+|....+.+...- .+.+|+|+++ .+.+.....  .-..+.+.++|+||.++..+.
T Consensus        19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~aDvVilav~~~~   85 (201)
T 2yjz_A           19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVLCYSEAASRSDVIVLAVHREH   85 (201)
Confidence            457999999999999999887652 4589999987 555543210  113456778999999887653

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=95.58  E-value=0.016  Score=51.40  Aligned_cols=61  Identities=16%  Similarity=0.190  Sum_probs=44.8

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCC----cccc-cc--cCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGM----ATED-VI--TAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~----~~~~-v~--~advvv~~~~~  215 (224)
                      ..+++|||+|.+|..|++++...-.+   .|++|++++++. +++ .|+    ..++ +.  +.|+|+.+|..
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~-a~~-~g~~~~~~~~~ll~~~~~D~V~i~tp~   75 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREA-AAQ-KGLKIYESYEAVLADEKVDAVLIATPN   75 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHH-HHT-TTCCBCSCHHHHHHCTTCCEEEECSCG
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHH-HHh-cCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence            46899999999999999998876443   789999998864 332 333    2233 33  68999988864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.56  E-value=0.018  Score=53.90  Aligned_cols=63  Identities=16%  Similarity=0.146  Sum_probs=48.1

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---------cCCC-----------------ccccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---------KKGM-----------------ATEDVIT  205 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---------~~g~-----------------~~~~v~~  205 (224)
                      .++++|||+|.+|......+... +++.+|+|++++++.+.++         ..|.                 ..+++.+
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHALAA   84 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGGGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHhcC
Confidence            46899999999999998888765 3469999999998776541         1121                 2467899


Q ss_pred             CcEEEEeccc
Q psy13395        206 AKLIYDKYQA  215 (224)
Q Consensus       206 advvv~~~~~  215 (224)
                      +|+||.+.-.
T Consensus        85 aDlVIeAVpe   94 (483)
T 3mog_A           85 ADLVIEAASE   94 (483)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEEcCCC
Confidence            9999998754

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=95.55  E-value=0.018  Score=49.71  Aligned_cols=63  Identities=10%  Similarity=0.145  Sum_probs=48.2

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeC--CcchHHhhhhccC----C------------CcccccccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNR--GLTEGTVTGSTKK----G------------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R--~~~~a~~~a~~~~----g------------~~~~~v~~advvv~~~~~  215 (224)
                      +++|||+|.+|......+...- ++.+|+|  ++++.+.+.+...    |            -..+++.++|+||.++..
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVST   81 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCG
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCCh
Confidence            6899999999999999887763 4599999  9988888876421    1            012346789999999876


Q ss_pred             cc
Q psy13395        216 QH  217 (224)
Q Consensus       216 ~~  217 (224)
                      +.
T Consensus        82 ~~   83 (335)
T 1txg_A           82 DG   83 (335)
T ss_dssp             GG
T ss_pred             HH
Confidence            53

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.52  E-value=0.022  Score=50.27  Aligned_cols=63  Identities=21%  Similarity=0.258  Sum_probs=47.7

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCC-c---EEEeCCcch-HHhhhhccCCC-----ccccc------ccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLK-L---KKYNRGLTE-GTVTGSTKKGM-----ATEDV------ITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~-i---~v~~R~~~~-a~~~a~~~~g~-----~~~~v------~~advvv~~~~~~  216 (224)
                      ..+++|||+|..|..|++.+....+ +   .++++++++ +++++++. |.     ..+++      .+.|+||.+|+..
T Consensus         4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~-g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~   82 (312)
T 1nvm_B            4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM-GVTTTYAGVEGLIKLPEFADIDFVFDATSAS   82 (312)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT-TCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred             CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHc-CCCcccCCHHHHHhccCCCCCcEEEECCChH
Confidence            4689999999999999999876454 3   789999998 78887643 22     22334      4679999999853

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.44  E-value=0.015  Score=53.84  Aligned_cols=65  Identities=6%  Similarity=0.021  Sum_probs=50.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhcc----------------CCC-----cccccccCcEEE
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTK----------------KGM-----ATEDVITAKLIY  210 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~----------------~g~-----~~~~v~~advvv  210 (224)
                      ...+++|||+|.+|......+..-+++.+|+|++++.+.+.+..                .++     ..+++.+||+||
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDvVi  114 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVI  114 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHcCCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCEEE
Confidence            34589999999999999988876333599999999998887621                122     246788999999


Q ss_pred             Eecccc
Q psy13395        211 DKYQAQ  216 (224)
Q Consensus       211 ~~~~~~  216 (224)
                      .++..+
T Consensus       115 iaVPt~  120 (432)
T 3pid_A          115 IATPTD  120 (432)
T ss_dssp             ECCCCE
T ss_pred             EeCCCc
Confidence            988664

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.41  E-value=0.018  Score=53.32  Aligned_cols=63  Identities=17%  Similarity=0.238  Sum_probs=49.4

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc-----------------CC-C-----cccccccCcEE
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK-----------------KG-M-----ATEDVITAKLI  209 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~-----------------~g-~-----~~~~v~~advv  209 (224)
                      .+++|||+|.+|......+... +++.+|+|++++.+.+.+..                 .+ +     ..+++.+||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            4799999999999999999876 44699999999998887621                 11 1     23458899999


Q ss_pred             EEecccc
Q psy13395        210 YDKYQAQ  216 (224)
Q Consensus       210 v~~~~~~  216 (224)
                      |.+...+
T Consensus        83 iiaVptp   89 (450)
T 3gg2_A           83 FIAVGTP   89 (450)
T ss_dssp             EECCCCC
T ss_pred             EEEcCCC
Confidence            9988654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.39  E-value=0.016  Score=50.46  Aligned_cols=64  Identities=16%  Similarity=0.156  Sum_probs=47.2

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhcc-----CC------C--cccccccCcEEEEeccccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTK-----KG------M--ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~-----~g------~--~~~~v~~advvv~~~~~~~  217 (224)
                      .+++|||+|.+|..-...+..-..+.+|+|++++++++.+..     .|      +  ..+.+..+|+||-++-+++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~   79 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLSLYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQHQ   79 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGGG
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHHH
Confidence            479999999999988888772123599999998888886521     11      1  1345678999999988764

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=95.38  E-value=0.012  Score=52.77  Aligned_cols=63  Identities=16%  Similarity=0.182  Sum_probs=48.4

Q ss_pred             CcEEEEEecC-HhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCC----ccccc-c--cCcEEEEecccc
Q psy13395        153 DLVLAIMGSG-AQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGM----ATEDV-I--TAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG-~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~----~~~~v-~--~advvv~~~~~~  216 (224)
                      ..+++|||+| ..+..|++++...-.+   .|++++++++++++++. |+    ..+++ .  +.|+||.+|..+
T Consensus         2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-g~~~~~~~~ell~~~~vD~V~i~tp~~   75 (387)
T 3moi_A            2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY-GIPVFATLAEMMQHVQMDAVYIASPHQ   75 (387)
T ss_dssp             CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH-TCCEESSHHHHHHHSCCSEEEECSCGG
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc-CCCeECCHHHHHcCCCCCEEEEcCCcH
Confidence            3589999999 9999999999875443   89999999999998753 33    22333 2  489999988754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.38  E-value=0.015  Score=47.63  Aligned_cols=65  Identities=14%  Similarity=0.126  Sum_probs=49.7

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc-----CC--C-----cccccccCcEEEEeccccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK-----KG--M-----ATEDVITAKLIYDKYQAQHSN  219 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~-----~g--~-----~~~~v~~advvv~~~~~~~~~  219 (224)
                      +++|+|+|..|+..++.+...- ++.++++++++++.+++..     .|  .     ..+.+.+||+||.+|.....|
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n   79 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN   79 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH
Confidence            5899999999999999987753 4599999999998887531     11  1     233478999999999876543

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=95.37  E-value=0.023  Score=50.34  Aligned_cols=63  Identities=14%  Similarity=0.079  Sum_probs=45.1

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCC--c-EEEeCCcchHHhhhhccC-----------------CC----cccc-cccCcE
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLK--L-KKYNRGLTEGTVTGSTKK-----------------GM----ATED-VITAKL  208 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~~-----------------g~----~~~~-v~~adv  208 (224)
                      .+++|+|+|.+|+.|++++...-.  + .|.+++++++..+++...                 ++    ..++ +.+.|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            379999999999999999876422  3 788999888877765210                 01    1222 347899


Q ss_pred             EEEecccc
Q psy13395        209 IYDKYQAQ  216 (224)
Q Consensus       209 vv~~~~~~  216 (224)
                      |+.+|...
T Consensus        83 V~~aTp~~   90 (334)
T 2czc_A           83 IVDATPGG   90 (334)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCcc
Confidence            99999643

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.37  E-value=0.022  Score=52.72  Aligned_cols=62  Identities=13%  Similarity=0.216  Sum_probs=50.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc-----------------CC-C-----cccccccCc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK-----------------KG-M-----ATEDVITAK  207 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~-----------------~g-~-----~~~~v~~ad  207 (224)
                      .+-+++|||+|.+|......|... +++.+|+|++++.+.+.+..                 .| +     ..+++.+||
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aD   86 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDAD   86 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCS
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCC
Confidence            578999999999999999999886 45699999999999987631                 12 2     246788999


Q ss_pred             EEEEec
Q psy13395        208 LIYDKY  213 (224)
Q Consensus       208 vvv~~~  213 (224)
                      +||.+.
T Consensus        87 vvii~V   92 (446)
T 4a7p_A           87 AVFIAV   92 (446)
T ss_dssp             EEEECC
T ss_pred             EEEEEc
Confidence            999993

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.37  E-value=0.026  Score=48.74  Aligned_cols=62  Identities=21%  Similarity=0.195  Sum_probs=47.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC-------cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM-------ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~-------~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||+|.+|+..++.+...- .+.+|+|++++.+.+.+  .|.       ..+.+.++|||+.++..
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~--~g~~~~~~~~l~~~l~~aDvVi~~~p~  223 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAE--MGMEPFHISKAAQELRDVDVCINTIPA  223 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--TTSEEEEGGGHHHHTTTCSEEEECCSS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH--CCCeecChhhHHHHhcCCCEEEECCCh
Confidence            5789999999999999999887543 25999999987665543  121       23456799999998864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=95.32  E-value=0.019  Score=51.36  Aligned_cols=66  Identities=14%  Similarity=0.068  Sum_probs=49.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC-CC---------cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK-GM---------ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~-g~---------~~~~v~~advvv~~~~~~~  217 (224)
                      ...+++|+|+|..|+..++.+...- .+.+++|++++++.+.+... .+         ..+.+.++||||.+++...
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~  242 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPG  242 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCC
Confidence            3589999999999999999887654 25999999999877754211 10         2355678999999997643

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.27  E-value=0.016  Score=52.07  Aligned_cols=64  Identities=16%  Similarity=0.207  Sum_probs=47.8

Q ss_pred             CCcEEEEEecCH---hHHHHHHHHHHhCCc---E-EEeCCcchHHhhhhccCCC-------ccccc-c-------cCcEE
Q psy13395        152 KDLVLAIMGSGA---QAYIHAKAFHASLKL---K-KYNRGLTEGTVTGSTKKGM-------ATEDV-I-------TAKLI  209 (224)
Q Consensus       152 ~~~~l~iiGaG~---QA~~hl~a~~~v~~i---~-v~~R~~~~a~~~a~~~~g~-------~~~~v-~-------~advv  209 (224)
                      +.-+++|||+|.   +|+.|+.++...-.+   . ||+|+++++++|+++. |+       ..+++ .       +.|+|
T Consensus        11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~-g~~~~~~~~~~~~ll~~~~~~~~~vD~V   89 (398)
T 3dty_A           11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQL-GVDSERCYADYLSMFEQEARRADGIQAV   89 (398)
T ss_dssp             SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHT-TCCGGGBCSSHHHHHHHHTTCTTCCSEE
T ss_pred             CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHh-CCCcceeeCCHHHHHhcccccCCCCCEE
Confidence            357899999999   999999998765443   4 7899999999998753 22       22333 2       37999


Q ss_pred             EEecccc
Q psy13395        210 YDKYQAQ  216 (224)
Q Consensus       210 v~~~~~~  216 (224)
                      +.+|...
T Consensus        90 ~i~tp~~   96 (398)
T 3dty_A           90 SIATPNG   96 (398)
T ss_dssp             EEESCGG
T ss_pred             EECCCcH
Confidence            9888643

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=95.26  E-value=0.027  Score=52.38  Aligned_cols=43  Identities=14%  Similarity=0.100  Sum_probs=36.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGST  194 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~  194 (224)
                      +.-+++|||+|.+|+.|++.+...-.+   -|++|+++++++++++
T Consensus        22 k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~   67 (446)
T 3upl_A           22 KPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRT   67 (446)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHH
T ss_pred             CceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH
Confidence            578999999999999999998775443   9999999999888653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.25  E-value=0.016  Score=52.88  Aligned_cols=62  Identities=10%  Similarity=0.060  Sum_probs=47.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhc---c----------CCC---------------cccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGST---K----------KGM---------------ATED  202 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~---~----------~g~---------------~~~~  202 (224)
                      ...+++|||+|..|...++.+...-- +.+|+|++++.+.+.+.   .          .++               ..+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~  262 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDA  262 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHH
Confidence            46899999999999999998887643 49999999887666541   0          011               2467


Q ss_pred             cccCcEEEEec
Q psy13395        203 VITAKLIYDKY  213 (224)
Q Consensus       203 v~~advvv~~~  213 (224)
                      +.+|||||++.
T Consensus       263 l~~aDIVI~tv  273 (381)
T 3p2y_A          263 ITKFDIVITTA  273 (381)
T ss_dssp             HTTCSEEEECC
T ss_pred             HhcCCEEEECC
Confidence            88999999875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.20  E-value=0.025  Score=42.13  Aligned_cols=64  Identities=11%  Similarity=0.034  Sum_probs=46.9

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc----CC-C-cc----c-ccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK----KG-M-AT----E-DVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~----~g-~-~~----~-~v~~advvv~~~~~~  216 (224)
                      .++++|+|+|..|+..++.+...- ++.+++|++++.+.+.+..    .+ . ..    + .+.++|+||.++...
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            457999999999999999987753 3599999998887765421    11 1 11    1 267899999998864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.19  E-value=0.047  Score=46.13  Aligned_cols=67  Identities=16%  Similarity=0.150  Sum_probs=52.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcch-HHhhhhc------cCCCcccccccCcEEEEecccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTE-GTVTGST------KKGMATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~-a~~~a~~------~~g~~~~~v~~advvv~~~~~~~~  218 (224)
                      ..++++|||.|..|..-++.+...-. +.|++++... .+.+++.      ...+..+++.++|+||.+|+...-
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~~  104 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQAV  104 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHHH
Confidence            67899999999999999999988754 4899887653 4555542      124578899999999999987543

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=95.17  E-value=0.023  Score=52.77  Aligned_cols=66  Identities=9%  Similarity=-0.039  Sum_probs=48.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhcc--CCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTK--KGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~--~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|+|.|.+|+...+.+...-- +.+|++++.++.......  .--..+.+.+||||+++++..|
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVilt~gt~~  278 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVTTTGNDD  278 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSC
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEECCCCcC
Confidence            46899999999999999999876532 488999987664433211  1125677889999999876544

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=95.15  E-value=0.028  Score=49.33  Aligned_cols=59  Identities=14%  Similarity=0.138  Sum_probs=43.0

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCC----ccccc-ccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGM----ATEDV-ITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~----~~~~v-~~advvv~~~~~~  216 (224)
                      ..+++|||+|.+|+.|++++...-.+   .+|+|++++  .++   .|+    ..+++ .+.|+||.+|..+
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~---~gv~~~~d~~~ll~~~DvViiatp~~   69 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK---TPVFDVADVDKHADDVDVLFLCMGSA   69 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS---SCEEEGGGGGGTTTTCSEEEECSCTT
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc---CCCceeCCHHHHhcCCCEEEEcCCcH
Confidence            45899999999999999998875333   789999766  333   222    12233 5899999999765

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.14  E-value=0.023  Score=52.65  Aligned_cols=64  Identities=9%  Similarity=-0.001  Sum_probs=47.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|+|+|.+|+..++.+...-- +.++++++.++..-.  ..|+    ..+.+.++||||++++..|
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~--~~G~~v~~Leeal~~ADIVi~atgt~~  287 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC--MDGFRLVKLNEVIRQVDIVITCTGNKN  287 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH--HTTCEECCHHHHTTTCSEEEECSSCSC
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH--HcCCEeccHHHHHhcCCEEEECCCCcc
Confidence            46899999999999999999876432 488999886543222  2232    5677889999999877554

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=95.05  E-value=0.025  Score=47.16  Aligned_cols=57  Identities=12%  Similarity=0.076  Sum_probs=38.9

Q ss_pred             EEEEEecCHhHHHHHHHHHHh-CCc-EEEeCCcchHHhhhhccCCCccccc-ccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHAS-LKL-KKYNRGLTEGTVTGSTKKGMATEDV-ITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v-~~i-~v~~R~~~~a~~~a~~~~g~~~~~v-~~advvv~~~~~~  216 (224)
                      +++|||+|.+|+.|++.+..- +++ .+|+|++ +++.    ...-..+.+ .+.|+||..|..+
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~----~~~~~~~l~~~~~DvVv~~~~~~   61 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK----MVRGIDEFLQREMDVAVEAASQQ   61 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT----EESSHHHHTTSCCSEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh----hcCCHHHHhcCCCCEEEECCCHH
Confidence            689999999999999998731 124 7999985 4332    111122233 5789999988643

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.05  E-value=0.023  Score=52.47  Aligned_cols=64  Identities=14%  Similarity=0.112  Sum_probs=47.4

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC-------CC-----cccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK-------GM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~-------g~-----~~~~v~~advvv~~~~~~  216 (224)
                      .++++|+|+|.+|+.+++.+...- .+.+++|++++++++++...       .+     ..+.+.+.|+||..+...
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            357899999999999999998632 24899999999988876321       12     124456899999998763

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.03  E-value=0.02  Score=52.88  Aligned_cols=62  Identities=10%  Similarity=0.108  Sum_probs=48.2

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh---CCcEEEeCCcchHHhhhhcc-----------------CCC-----cccccccCc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS---LKLKKYNRGLTEGTVTGSTK-----------------KGM-----ATEDVITAK  207 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v---~~i~v~~R~~~~a~~~a~~~-----------------~g~-----~~~~v~~ad  207 (224)
                      ..+++|||+|.+|......+...   +++.+|+|++++.+.+.+..                 .++     ..+++.++|
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD   84 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD   84 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence            35899999999999999999887   44699999999988864310                 122     235678999


Q ss_pred             EEEEecc
Q psy13395        208 LIYDKYQ  214 (224)
Q Consensus       208 vvv~~~~  214 (224)
                      +||.+..
T Consensus        85 vViiaVp   91 (467)
T 2q3e_A           85 LVFISVN   91 (467)
T ss_dssp             EEEECCC
T ss_pred             EEEEEcC
Confidence            9999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.99  E-value=0.045  Score=51.19  Aligned_cols=65  Identities=12%  Similarity=0.133  Sum_probs=52.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh--C-CcEEEeCCcc----hHHhhhhcc-------------------CC-C----cc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS--L-KLKKYNRGLT----EGTVTGSTK-------------------KG-M----AT  200 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v--~-~i~v~~R~~~----~a~~~a~~~-------------------~g-~----~~  200 (224)
                      ...+++|||+|.+|......+...  + ++.+|+|+++    +.+.+.+..                   .| +    ..
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~   96 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDF   96 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCG
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcH
Confidence            567899999999999999999888  5 6799999999    888776521                   12 1    46


Q ss_pred             cccccCcEEEEecccc
Q psy13395        201 EDVITAKLIYDKYQAQ  216 (224)
Q Consensus       201 ~~v~~advvv~~~~~~  216 (224)
                      +++.+||+||.+...+
T Consensus        97 ea~~~aDvViiaVptp  112 (478)
T 3g79_A           97 SRISELDAVTLAIQTP  112 (478)
T ss_dssp             GGGGGCSEEEECCCCC
T ss_pred             HHHhcCCEEEEecCCc
Confidence            7788999999987654

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.96  E-value=0.039  Score=45.29  Aligned_cols=49  Identities=10%  Similarity=0.173  Sum_probs=37.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ...+++|||+|.+|....+.+...- ++.+|+|+++               ++.++|+||.++..
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~---------------~~~~aD~vi~av~~   67 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ---------------ATTLGEIVIMAVPY   67 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC---------------CSSCCSEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH---------------HhccCCEEEEcCCc
Confidence            4678999999999999999987653 3599999876               45677888777653

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=94.95  E-value=0.033  Score=52.16  Aligned_cols=63  Identities=13%  Similarity=0.167  Sum_probs=48.2

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc-CC--C----cccccc----cCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK-KG--M----ATEDVI----TAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~-~g--~----~~~~v~----~advvv~~~~~  215 (224)
                      ..+++|||+|.+|....+.+... +++.+|+|++++++.|.+.. .|  +    ..+++.    ++|+|+.+...
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~   78 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKA   78 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCS
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCC
Confidence            45799999999999999998875 34699999999999998742 12  1    223333    49999998766

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=94.90  E-value=0.023  Score=50.52  Aligned_cols=63  Identities=17%  Similarity=0.052  Sum_probs=46.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc-CCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK-KGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~-~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+.-.+.+...- .+.+|+|+++..+.+.... ..-..+.+.+||+|+..+-
T Consensus       136 ~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lP  200 (324)
T 3evt_A          136 TGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALP  200 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCC
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCC
Confidence            4789999999999999999887542 2488999988766554421 1124567789999998764

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=94.88  E-value=0.031  Score=52.16  Aligned_cols=64  Identities=13%  Similarity=0.093  Sum_probs=47.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|+|.|.+|+..++.+...-- +.++++++.++....  ..|+    ..+.+.+||||+++++..|
T Consensus       246 ~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~--~~G~~vv~LeElL~~ADIVv~atgt~~  314 (464)
T 3n58_A          246 AGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA--MDGFEVVTLDDAASTADIVVTTTGNKD  314 (464)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH--HTTCEECCHHHHGGGCSEEEECCSSSS
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH--hcCceeccHHHHHhhCCEEEECCCCcc
Confidence            57899999999999999998776432 488888886643222  2232    4677889999999987554

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=94.81  E-value=0.033  Score=52.35  Aligned_cols=64  Identities=13%  Similarity=0.074  Sum_probs=48.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|+|+|.+|...++.+...- .+.+|+|++++++...+  .|.    ..+.+.++||||++++..+
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~--~Ga~~~~l~e~l~~aDvVi~atgt~~  341 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM--EGFDVVTVEEAIGDADIVVTATGNKD  341 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH--TTCEECCHHHHGGGCSEEEECSSSSC
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--cCCEEecHHHHHhCCCEEEECCCCHH
Confidence            5789999999999999999887643 24899999988654432  232    3455779999999987655

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=94.80  E-value=0.03  Score=52.04  Aligned_cols=61  Identities=13%  Similarity=0.068  Sum_probs=46.6

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC------CC----cc-cccc---cCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK------GM----AT-EDVI---TAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~------g~----~~-~~v~---~advvv~~~~~  215 (224)
                      +++|||+|.+|....+.+...- ++.+|+|++++++++.++..      ++    .. +.+.   ++|+||.++..
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~   78 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQA   78 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCC
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCC
Confidence            6999999999999999987653 45999999999998876411      11    22 3333   39999999876

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.76  E-value=0.028  Score=50.92  Aligned_cols=62  Identities=10%  Similarity=0.022  Sum_probs=48.2

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhccC----------------CC-----cccccccCcEEEEec
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKK----------------GM-----ATEDVITAKLIYDKY  213 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~~----------------g~-----~~~~v~~advvv~~~  213 (224)
                      +++|||+|.+|......+..-+.+.+|+|++++.+.+.+...                .+     ..+++.++|+||.++
T Consensus         2 kI~VIG~G~vG~~~A~~La~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvviiav   81 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIAT   81 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHhCCCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEEec
Confidence            689999999999999998872235999999999988865321                11     235677899999998


Q ss_pred             ccc
Q psy13395        214 QAQ  216 (224)
Q Consensus       214 ~~~  216 (224)
                      ..+
T Consensus        82 pt~   84 (402)
T 1dlj_A           82 PTN   84 (402)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            775

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.75  E-value=0.033  Score=50.87  Aligned_cols=61  Identities=15%  Similarity=0.178  Sum_probs=47.8

Q ss_pred             EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc-----------------CC-C-----cccccccCcEEE
Q psy13395        155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK-----------------KG-M-----ATEDVITAKLIY  210 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~-----------------~g-~-----~~~~v~~advvv  210 (224)
                      +++|||+|.+|......+... +++.+|+|++++.+.+.+..                 .| +     ..+++.++|+||
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvvi   81 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSF   81 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEEE
Confidence            689999999999999998876 34599999999998887621                 22 1     224678999999


Q ss_pred             Eeccc
Q psy13395        211 DKYQA  215 (224)
Q Consensus       211 ~~~~~  215 (224)
                      .+...
T Consensus        82 iaVpt   86 (436)
T 1mv8_A           82 ICVGT   86 (436)
T ss_dssp             ECCCC
T ss_pred             EEcCC
Confidence            98854

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=94.73  E-value=0.049  Score=48.06  Aligned_cols=63  Identities=11%  Similarity=0.031  Sum_probs=46.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|||+|.+|+...+.+...- .+.+|+|++++.+.+.+  .|+    ..+.+.++|+|+.+...+
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--~g~~~~~l~e~l~~aDvVi~~vp~~  221 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAE--FQAEFVSTPELAAQSDFIVVACSLT  221 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHT--TTCEECCHHHHHHHCSEEEECCCCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHh--cCceeCCHHHHHhhCCEEEEeCCCC
Confidence            4678999999999999999887542 35999999876655433  122    345577999999987653

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=94.73  E-value=0.032  Score=50.62  Aligned_cols=63  Identities=14%  Similarity=0.201  Sum_probs=46.1

Q ss_pred             CCcEEEEEecCH---hHHHHHHHHHHhCCc---E-EEeCCcchHHhhhhccCCC-------ccccc-c-------cCcEE
Q psy13395        152 KDLVLAIMGSGA---QAYIHAKAFHASLKL---K-KYNRGLTEGTVTGSTKKGM-------ATEDV-I-------TAKLI  209 (224)
Q Consensus       152 ~~~~l~iiGaG~---QA~~hl~a~~~v~~i---~-v~~R~~~~a~~~a~~~~g~-------~~~~v-~-------~advv  209 (224)
                      +.-+++|||+|.   ++..|+.++...-.+   . |++|+++++++++++. |+       ..+++ .       +.|+|
T Consensus        36 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~-g~~~~~~~~~~~~ll~~~~~~~~~vD~V  114 (417)
T 3v5n_A           36 KRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGREL-GLDPSRVYSDFKEMAIREAKLKNGIEAV  114 (417)
T ss_dssp             CCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHH-TCCGGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred             CcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHc-CCCcccccCCHHHHHhcccccCCCCcEE
Confidence            457999999999   999999997765433   4 8899999999998753 22       22333 2       37999


Q ss_pred             EEeccc
Q psy13395        210 YDKYQA  215 (224)
Q Consensus       210 v~~~~~  215 (224)
                      +.+|..
T Consensus       115 ~I~tp~  120 (417)
T 3v5n_A          115 AIVTPN  120 (417)
T ss_dssp             EECSCT
T ss_pred             EECCCc
Confidence            988864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.70  E-value=0.038  Score=51.19  Aligned_cols=68  Identities=15%  Similarity=0.176  Sum_probs=56.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhccCC--------C-----cccccccCcEEEEecccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKG--------M-----ATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~~g--------~-----~~~~v~~advvv~~~~~~~~  218 (224)
                      ..+++.|+|.|..|+.-++.+..-+.+.+..+++++++.+++....        .     ..+-|.++|++|..|.....
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T~~De~  313 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALTNEDET  313 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred             cccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcccCcHH
Confidence            5889999999999999999986655559999999999999985432        1     57789999999999987655


Q ss_pred             c
Q psy13395        219 N  219 (224)
Q Consensus       219 ~  219 (224)
                      |
T Consensus       314 N  314 (461)
T 4g65_A          314 N  314 (461)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.67  E-value=0.044  Score=50.71  Aligned_cols=64  Identities=13%  Similarity=0.142  Sum_probs=46.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc----------c---------C-----CCcccccccC
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST----------K---------K-----GMATEDVITA  206 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~----------~---------~-----g~~~~~v~~a  206 (224)
                      ..++|+|||+|.+|......+... +++.+|+|+++.++...+.          +         .     ....+++.++
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~a  115 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTV  115 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGGGGTTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHHHHCCC
Confidence            457899999999999888887654 2359999999877654320          0         0     0134678899


Q ss_pred             cEEEEeccc
Q psy13395        207 KLIYDKYQA  215 (224)
Q Consensus       207 dvvv~~~~~  215 (224)
                      |+||.+...
T Consensus       116 DlVIeaVpe  124 (463)
T 1zcj_A          116 DLVVEAVFE  124 (463)
T ss_dssp             SEEEECCCS
T ss_pred             CEEEEcCCC
Confidence            999999864

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=94.65  E-value=0.03  Score=49.17  Aligned_cols=61  Identities=13%  Similarity=0.115  Sum_probs=41.3

Q ss_pred             cEEEEEecCHhHH-HHHHHHHHhCC---c-EEEeCCcchHHhhhhccCCC----cccc-cc--cCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAY-IHAKAFHASLK---L-KKYNRGLTEGTVTGSTKKGM----ATED-VI--TAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~-~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~g~----~~~~-v~--~advvv~~~~~  215 (224)
                      .+++|||+|.+|+ .|+.++....+   + -||+|++++++.+++ ..+.    ..++ +.  +.|+|+.+|..
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~D~V~i~tp~   75 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPI-YSHIHFTSDLDEVLNDPDVKLVVVCTHA   75 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGG-GTTCEEESCTHHHHTCTTEEEEEECSCG
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHh-cCCCceECCHHHHhcCCCCCEEEEcCCh
Confidence            5799999999998 59984433333   3 799999998855443 2232    2233 33  37999998864

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=94.59  E-value=0.045  Score=51.29  Aligned_cols=64  Identities=11%  Similarity=-0.011  Sum_probs=48.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|.+|+.-.+.+...- .+.+|+|++.++....+  .|+    ..+.+.++||||+++...|
T Consensus       256 ~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~--~g~~~~~l~ell~~aDiVi~~~~t~~  324 (479)
T 1v8b_A          256 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVM--EGFNVVTLDEIVDKGDFFITCTGNVD  324 (479)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHT--TTCEECCHHHHTTTCSEEEECCSSSS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHH--cCCEecCHHHHHhcCCEEEECCChhh
Confidence            5789999999999999999987653 24999999987633322  222    4567789999999975443

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=94.58  E-value=0.042  Score=42.67  Aligned_cols=64  Identities=11%  Similarity=-0.002  Sum_probs=41.5

Q ss_pred             CCcEEEEEec----CHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhccCCCcccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGS----GAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGa----G~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~  216 (224)
                      ++++++|||+    |.+++.+++.+.. ....||..++.+.+.+.........+.....|+|+..+.++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~-~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp~~   80 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLS-KGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPK   80 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHH-TTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCHH
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHH-CCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeCHH
Confidence            6789999999    9999999999866 34467766665433221121222233334689999887653

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.54  E-value=0.058  Score=47.01  Aligned_cols=65  Identities=15%  Similarity=0.119  Sum_probs=48.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc-----C------CC----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK-----K------GM----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~-----~------g~----~~~~v~~advvv~~~~~  215 (224)
                      ...+++|||+|.+|......+...- ++.+| +++++.+++.+..     .      .+    ..+++.++|+||.++-.
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavk~   96 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSAVQGADLVLFCVKS   96 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGGGTTCSEEEECCCG
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHcCCCCEEEEEccc
Confidence            4678999999999999999887754 35999 8888888887521     0      11    34567899999999887


Q ss_pred             cc
Q psy13395        216 QH  217 (224)
Q Consensus       216 ~~  217 (224)
                      ++
T Consensus        97 ~~   98 (318)
T 3hwr_A           97 TD   98 (318)
T ss_dssp             GG
T ss_pred             cc
Confidence            64

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.53  E-value=0.062  Score=41.35  Aligned_cols=65  Identities=5%  Similarity=-0.069  Sum_probs=46.2

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCc-chHHhhhhc-cCCC-------------cccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGL-TEGTVTGST-KKGM-------------ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~-~~a~~~a~~-~~g~-------------~~~~v~~advvv~~~~~~  216 (224)
                      ..+++|+|+|..|+.-++.+.... ++.+.+|++ ++++.+.+. ..|+             ..+.+.++|+||.+|...
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            457899999999999999887743 458899974 555555431 1121             123488999999999765


Q ss_pred             c
Q psy13395        217 H  217 (224)
Q Consensus       217 ~  217 (224)
                      .
T Consensus        83 ~   83 (153)
T 1id1_A           83 A   83 (153)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=94.49  E-value=0.03  Score=49.78  Aligned_cols=63  Identities=17%  Similarity=0.046  Sum_probs=45.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc-CCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK-KGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~-~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+.-.+.+...- .+.+|+|+++..+.+.... ..-..+.+.++|||+....
T Consensus       139 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lP  203 (324)
T 3hg7_A          139 KGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLP  203 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCC
T ss_pred             ccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCC
Confidence            4689999999999999999886542 2488999986655543321 1124566779999998764

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=94.49  E-value=0.037  Score=51.39  Aligned_cols=63  Identities=16%  Similarity=0.135  Sum_probs=48.6

Q ss_pred             CCcEEEEEec----CHhHHHHHHHHHHhCC---c-EEEeCCcchHHhhhhccCCC-------cccccc---cCcEEEEec
Q psy13395        152 KDLVLAIMGS----GAQAYIHAKAFHASLK---L-KKYNRGLTEGTVTGSTKKGM-------ATEDVI---TAKLIYDKY  213 (224)
Q Consensus       152 ~~~~l~iiGa----G~QA~~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~g~-------~~~~v~---~advvv~~~  213 (224)
                      +..+++|||+    |.++..|++++....+   + .|++++++++++|+++. |+       ..+++.   +.|+|+.+|
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~-g~~~~~~~~d~~ell~~~~vD~V~I~t  116 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL-QLKHATGFDSLESFAQYKDIDMIVVSV  116 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT-TCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHc-CCCcceeeCCHHHHhcCCCCCEEEEcC
Confidence            4578999999    9999999999988623   3 79999999999998752 22       223332   589999988


Q ss_pred             cc
Q psy13395        214 QA  215 (224)
Q Consensus       214 ~~  215 (224)
                      ..
T Consensus       117 p~  118 (479)
T 2nvw_A          117 KV  118 (479)
T ss_dssp             CH
T ss_pred             Cc
Confidence            63

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=94.47  E-value=0.064  Score=48.12  Aligned_cols=64  Identities=11%  Similarity=0.012  Sum_probs=46.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc---cCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST---KKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~---~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+...+.+...- .+.+|+|++...+.+.+.   ...-..+.+.++|||+.....
T Consensus       163 ~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Pl  230 (351)
T 3jtm_A          163 EGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPL  230 (351)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCC
T ss_pred             cCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCC
Confidence            5679999999999999999887542 248899987665554431   112256677899999987653

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=94.41  E-value=0.054  Score=48.29  Aligned_cols=64  Identities=16%  Similarity=0.086  Sum_probs=46.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhc---cCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGST---KKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~---~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+...+.+...+.  +.+|+|++++.+...+.   ...-..+.+.++|+|+.+...
T Consensus       162 ~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~  230 (348)
T 2w2k_A          162 RGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPY  230 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCC
Confidence            56799999999999999999872344  48999998766544321   111134557799999998754

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.32  E-value=0.038  Score=51.34  Aligned_cols=63  Identities=11%  Similarity=0.088  Sum_probs=49.3

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh---CCcEEEeCCcchHHhhhhcc-----C------------CC-----cccccccCc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS---LKLKKYNRGLTEGTVTGSTK-----K------------GM-----ATEDVITAK  207 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v---~~i~v~~R~~~~a~~~a~~~-----~------------g~-----~~~~v~~ad  207 (224)
                      ..+++|||+|.+|......|...   +++.+|+|++++++.+.+..     .            ++     ..+++.++|
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aD   88 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEAD   88 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCC
Confidence            35899999999999999999987   34699999999999887521     1            11     135678999


Q ss_pred             EEEEeccc
Q psy13395        208 LIYDKYQA  215 (224)
Q Consensus       208 vvv~~~~~  215 (224)
                      +||.+...
T Consensus        89 vvii~Vpt   96 (481)
T 2o3j_A           89 LIFISVNT   96 (481)
T ss_dssp             EEEECCCC
T ss_pred             EEEEecCC
Confidence            99999543

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=94.23  E-value=0.088  Score=46.09  Aligned_cols=62  Identities=10%  Similarity=-0.042  Sum_probs=47.2

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhhcc------------CCCcccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGSTK------------KGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~~~------------~g~~~~~v~~advvv~~~~~~  216 (224)
                      +++|||+|.+|...+..+...-.   +.+|++++++++.++...            .....+++.+||+||.+.+..
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~aDvViiav~~~   78 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVP   78 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCHHHhCCCCEEEEccCCC
Confidence            68999999999999888876543   499999998877665310            001467788999999998764

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=94.23  E-value=0.046  Score=48.76  Aligned_cols=62  Identities=13%  Similarity=0.131  Sum_probs=45.0

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC--------Cc---EEEeCCcchHHhhhhcc-CCCcccccccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL--------KL---KKYNRGLTEGTVTGSTK-KGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~--------~i---~v~~R~~~~a~~~a~~~-~g~~~~~v~~advvv~~~~~~  216 (224)
                      -+++|||+|.+|..|++.+....        .+   .|++|++++++.|.... .. ..+++.+.||||..|...
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~-d~~~ll~iDvVve~t~~~   77 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRA-EPFDLLEADLVVEAMGGV   77 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEES-SCCCCTTCSEEEECCCCS
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccC-CHHHHhCCCEEEECCCCc
Confidence            57999999999999999987764        33   89999988776553211 01 223333889999999754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.13  E-value=0.089  Score=47.26  Aligned_cols=41  Identities=5%  Similarity=-0.046  Sum_probs=32.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhh
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTG  192 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a  192 (224)
                      ...+++|||+|..|...++.+...-- +.+|+|++++.+.+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~  212 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVE  212 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            47899999999999999988776432 499999988765543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.10  E-value=0.058  Score=46.59  Aligned_cols=54  Identities=17%  Similarity=0.118  Sum_probs=41.1

Q ss_pred             CcEEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEecccc
Q psy13395        153 DLVLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~  216 (224)
                      ..+++||| +|.+|....+.+...- .+.+|+|+++.          -..+.+.++|+||.++..+
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~----------~~~~~~~~aDvVilavp~~   76 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA----------VAESILANADVVIVSVPIN   76 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG----------GHHHHHTTCSEEEECSCGG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc----------CHHHHhcCCCEEEEeCCHH
Confidence            35899999 9999999999988753 35999998763          1234566788888877654

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=94.07  E-value=0.067  Score=46.59  Aligned_cols=63  Identities=11%  Similarity=0.085  Sum_probs=45.2

Q ss_pred             CcEEEEEecCHhHH-HHHHHHHHh-CCc-EEEeCCcchHHhhhhccCCC----ccccc-c--cCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAY-IHAKAFHAS-LKL-KKYNRGLTEGTVTGSTKKGM----ATEDV-I--TAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~-~hl~a~~~v-~~i-~v~~R~~~~a~~~a~~~~g~----~~~~v-~--~advvv~~~~~  215 (224)
                      ..+++|||+|..+. .+++++..- ..+ .||+|+++++++|+++..+.    ..+++ .  +.|+|+.+|..
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   76 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIP   76 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCG
T ss_pred             ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCCh
Confidence            46899999999885 577776432 123 89999999999998864332    23333 2  58999998864

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=94.05  E-value=0.068  Score=47.02  Aligned_cols=61  Identities=11%  Similarity=0.101  Sum_probs=43.2

Q ss_pred             CCcEEEEEecCHhHHH-HHHHHHHhCCc---EEEeCCcchHHhhhhccCCC----ccccc-c--cCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYI-HAKAFHASLKL---KKYNRGLTEGTVTGSTKKGM----ATEDV-I--TAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~-hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~----~~~~v-~--~advvv~~~~~  215 (224)
                      +..+++|||+|.+|+. |++++...-.+   -|++++++++++   ...+.    ..+++ .  +.|+|+.+|..
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~---~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   77 (352)
T 3kux_A            6 DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA---DWPAIPVVSDPQMLFNDPSIDLIVIPTPN   77 (352)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT---TCSSCCEESCHHHHHHCSSCCEEEECSCT
T ss_pred             CCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh---hCCCCceECCHHHHhcCCCCCEEEEeCCh
Confidence            3578999999999996 99998775443   799999998762   11122    22333 2  47999988853

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=94.02  E-value=0.074  Score=48.55  Aligned_cols=66  Identities=15%  Similarity=0.183  Sum_probs=48.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC---------CcEEEeCCcch-----HHhhhhccC------CC-----------cc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL---------KLKKYNRGLTE-----GTVTGSTKK------GM-----------AT  200 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~---------~i~v~~R~~~~-----a~~~a~~~~------g~-----------~~  200 (224)
                      .+.+++|||+|.-|-+....+..-.         .+++|.|+++.     .+...++++      |+           ..
T Consensus        33 ~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~  112 (391)
T 4fgw_A           33 KPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLI  112 (391)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHH
Confidence            6889999999999999888887532         14999999874     222332221      32           25


Q ss_pred             cccccCcEEEEeccccc
Q psy13395        201 EDVITAKLIYDKYQAQH  217 (224)
Q Consensus       201 ~~v~~advvv~~~~~~~  217 (224)
                      +++.+||+||-+.-.|+
T Consensus       113 ~al~~ad~ii~avPs~~  129 (391)
T 4fgw_A          113 DSVKDVDIIVFNIPHQF  129 (391)
T ss_dssp             HHHTTCSEEEECSCGGG
T ss_pred             HHHhcCCEEEEECChhh
Confidence            67889999999988875

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=93.95  E-value=0.043  Score=48.31  Aligned_cols=60  Identities=15%  Similarity=0.160  Sum_probs=42.7

Q ss_pred             cEEEEEecCHhHH-HHHHHHHHhCC--c-EEEeCCcchHHhhhhcc--CCC----ccccc-c--cCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAY-IHAKAFHASLK--L-KKYNRGLTEGTVTGSTK--KGM----ATEDV-I--TAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~-~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~--~g~----~~~~v-~--~advvv~~~~~  215 (224)
                      .+++|||+|.+|. .|+.++...-.  + .|++|+  ++++|+++.  .+.    ..+++ .  +.|+|+.+|..
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   75 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPA   75 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCG
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCc
Confidence            4799999999998 79999877433  3 789998  677777642  232    22333 2  37999988864

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=93.94  E-value=0.035  Score=50.34  Aligned_cols=62  Identities=10%  Similarity=0.114  Sum_probs=46.4

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC----CcEEEeCCcchHHhhhhccC-----CC------------ccccccc--CcEEE
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL----KLKKYNRGLTEGTVTGSTKK-----GM------------ATEDVIT--AKLIY  210 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~----~i~v~~R~~~~a~~~a~~~~-----g~------------~~~~v~~--advvv  210 (224)
                      ++++|+|+|..|+.+++.+...-    .+.+++|+.++++++++...     .+            ..+.+.+  .|+||
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            47899999999999999998754    24899999999998876311     11            1233344  79999


Q ss_pred             Eeccc
Q psy13395        211 DKYQA  215 (224)
Q Consensus       211 ~~~~~  215 (224)
                      .+++.
T Consensus        82 n~ag~   86 (405)
T 4ina_A           82 NIALP   86 (405)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            98765

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=93.88  E-value=0.084  Score=47.47  Aligned_cols=65  Identities=15%  Similarity=0.119  Sum_probs=47.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-C-cEEEeCCcchHHhhhh---ccCCCcccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-K-LKKYNRGLTEGTVTGS---TKKGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~-i~v~~R~~~~a~~~a~---~~~g~~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|||.|.+|+...+.+...- . +.+|+|++++.+.+.+   ....-..+.+.++|||+......
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t  232 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLH  232 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCC
Confidence            5679999999999999999987653 4 6889998866554332   11112455667999999987654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.85  E-value=0.085  Score=47.39  Aligned_cols=64  Identities=11%  Similarity=0.106  Sum_probs=47.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC-CC---------cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK-GM---------ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~-g~---------~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||+|.+|..-++.+...- .+.+|+|++++.+.+.+... .+         ..+.+.++|+||.++..
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~  241 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLV  241 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence            4689999999999999999887643 24999999988766554211 00         23556789999998754

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=93.85  E-value=0.066  Score=46.79  Aligned_cols=62  Identities=15%  Similarity=0.100  Sum_probs=45.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+.-.+.+...- .+.+|+|++++.+.. + ...-..+.+.++|+|+.....
T Consensus       121 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-~-~~~~l~ell~~aDiV~l~~P~  183 (290)
T 3gvx_A          121 YGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVD-V-ISESPADLFRQSDFVLIAIPL  183 (290)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCS-E-ECSSHHHHHHHCSEEEECCCC
T ss_pred             ecchheeeccCchhHHHHHHHHhhCcEEEEEeccccccccc-c-ccCChHHHhhccCeEEEEeec
Confidence            3579999999999999999887653 349999998765441 1 112245667799999987753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=93.84  E-value=0.044  Score=48.03  Aligned_cols=63  Identities=11%  Similarity=0.097  Sum_probs=46.1

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC-----------CC----cccccccCcEEEEeccccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK-----------GM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~-----------g~----~~~~v~~advvv~~~~~~~  217 (224)
                      .+++|||+|.+|..-...+... .++.+|+|+ ++.+++.+...           .+    ..+++.++|+||.++-.++
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vilavk~~~   82 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAALGEQDVVIVAVKAPA   82 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHHHCCCSEEEECCCHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHHcCCCCEEEEeCCchh
Confidence            4799999999999999888775 346999996 56666654210           01    3455788999999987653

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=93.81  E-value=0.072  Score=50.11  Aligned_cols=63  Identities=8%  Similarity=-0.044  Sum_probs=46.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|||.|.+|+.-.+.+...- .+.+|+|++.++.....  .|+    ..+.+.++|||++.+...
T Consensus       276 ~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~--~G~~~~~l~ell~~aDiVi~~~~t~  343 (494)
T 3d64_A          276 AGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAM--EGYRVVTMEYAADKADIFVTATGNY  343 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHT--TTCEECCHHHHTTTCSEEEECSSSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHH--cCCEeCCHHHHHhcCCEEEECCCcc
Confidence            5789999999999999999887542 24999999877522221  232    456788999999998443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=93.81  E-value=0.073  Score=47.21  Aligned_cols=64  Identities=16%  Similarity=0.070  Sum_probs=42.8

Q ss_pred             CCcEEEEEecCHhHHH-HHHHHHHhCC--c-EEEeCCcchHHhhhh--ccCCCcccccc--cCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYI-HAKAFHASLK--L-KKYNRGLTEGTVTGS--TKKGMATEDVI--TAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~-hl~a~~~v~~--i-~v~~R~~~~a~~~a~--~~~g~~~~~v~--~advvv~~~~~  215 (224)
                      +..+++|||+|.+|+. |++++...-.  + -|++|+++++++-..  ....-..+-+.  +.|+|+.+|..
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   77 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPN   77 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCG
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCCh
Confidence            4678999999999996 9998877533  3 799999987652111  11111223333  68999998864

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=93.79  E-value=0.052  Score=48.26  Aligned_cols=63  Identities=16%  Similarity=0.100  Sum_probs=45.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|||+|.+|+...+.+...- .+.+|+|++++.+.+  ....-..+.+.++|+|+.+...+
T Consensus       163 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~g~--~~~~~l~ell~~aDvVil~vP~~  226 (333)
T 3ba1_A          163 SGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNY--TYYGSVVELASNSDILVVACPLT  226 (333)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTCCS--EEESCHHHHHHTCSEEEECSCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhccCc--eecCCHHHHHhcCCEEEEecCCC
Confidence            4678999999999999999887532 359999998764311  11111345678999999987653

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=93.79  E-value=0.1  Score=45.46  Aligned_cols=61  Identities=8%  Similarity=-0.025  Sum_probs=45.4

Q ss_pred             EEEEEecCHhHHHHHHHHHHh---CCcEEEeCCcchHHhhhh----c----cCC------CcccccccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHAS---LKLKKYNRGLTEGTVTGS----T----KKG------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v---~~i~v~~R~~~~a~~~a~----~----~~g------~~~~~v~~advvv~~~~~  215 (224)
                      +++|||+|.++......+..-   ..+.+|++++++++..+.    .    ...      ...+++.+||+||.+.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~l~~aDvViiav~~   79 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGL   79 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHHHCCCCEEEEeCCC
Confidence            689999999999988887763   235999999988776542    1    001      134568999999999864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.76  E-value=0.068  Score=49.07  Aligned_cols=54  Identities=9%  Similarity=-0.065  Sum_probs=39.5

Q ss_pred             HhhhhhccCCCC--------CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhh
Q psy13395        140 VATKHLFGRSGD--------KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGS  193 (224)
Q Consensus       140 laa~~Lar~~~~--------~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~  193 (224)
                      +|+.+|.+.+.-        ...+++|||+|..|...++.+...-- +.+|++++++.+.+.+
T Consensus       169 ~aa~~l~~~~~~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          169 DAAYEYDRALPMMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS  231 (405)
T ss_dssp             HHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH
T ss_pred             HHHHHhHhhhchhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            456667653210        46899999999999999998876543 4999999987655543

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=93.76  E-value=0.066  Score=47.05  Aligned_cols=60  Identities=17%  Similarity=-0.025  Sum_probs=44.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+...+.+...- .+.+|+|++++.+  ..  ..-..+.+.++|||+.....
T Consensus       143 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~--~~--~~~l~ell~~aDvV~l~~p~  203 (311)
T 2cuk_A          143 QGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP--YP--FLSLEELLKEADVVSLHTPL  203 (311)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS--SC--BCCHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc--cc--cCCHHHHHhhCCEEEEeCCC
Confidence            5678999999999999999887642 2489999987754  11  12245667799999998644

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=93.76  E-value=0.16  Score=44.44  Aligned_cols=64  Identities=13%  Similarity=-0.007  Sum_probs=47.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhh----cc--CC-------CcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGS----TK--KG-------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~----~~--~g-------~~~~~v~~advvv~~~~~  215 (224)
                      +..+++|||+|.++...+..+..-..   +.++++++++++..+.    ..  .+       -..+++.+||+||.+.+.
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~   84 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA   84 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCC
Confidence            56799999999999998888766432   4899999876655432    11  11       146789999999999764

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=93.75  E-value=0.095  Score=46.33  Aligned_cols=65  Identities=14%  Similarity=0.078  Sum_probs=46.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc--cCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST--KKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~--~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||+|.+|+...+.+...- .+.+|+|++++ +...+.  ...-..+.+.++|+|+.+...+.
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~  216 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEFKPLEDLLRESDFVVLAVPLTR  216 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEECCHHHHHHHCSEEEECCCCCT
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCcccCCHHHHHhhCCEEEECCCCCh
Confidence            4678999999999999999987642 24999999877 322221  11113456789999999886654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=93.75  E-value=0.11  Score=44.69  Aligned_cols=65  Identities=15%  Similarity=-0.002  Sum_probs=46.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHh--h--hhcc--C-C------CcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTV--T--GSTK--K-G------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~--~--a~~~--~-g------~~~~~v~~advvv~~~~~  215 (224)
                      ...+++|||+|.+|......+....   .+.+|+|++++++.  .  .+..  . .      ...+++.++|+||.+++.
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~~   85 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGP   85 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCCC
Confidence            4568999999999999888877653   35999999877652  2  1111  0 1      135678899999999865


Q ss_pred             c
Q psy13395        216 Q  216 (224)
Q Consensus       216 ~  216 (224)
                      .
T Consensus        86 ~   86 (319)
T 1lld_A           86 R   86 (319)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=93.72  E-value=0.078  Score=47.04  Aligned_cols=38  Identities=24%  Similarity=0.231  Sum_probs=28.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHH
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGT  189 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~  189 (224)
                      ...+|+|||+|.+|..-...++.. +++.+|+++++..+
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~   43 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQIT   43 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence            688999999999998776665554 34599999987643

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=93.71  E-value=0.036  Score=50.62  Aligned_cols=63  Identities=17%  Similarity=0.152  Sum_probs=48.0

Q ss_pred             CcEEEEEec----CHhHHHHHHHHHHhCC---c-EEEeCCcchHHhhhhccC--C---C-cccccc---cCcEEEEeccc
Q psy13395        153 DLVLAIMGS----GAQAYIHAKAFHASLK---L-KKYNRGLTEGTVTGSTKK--G---M-ATEDVI---TAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGa----G~QA~~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~--g---~-~~~~v~---~advvv~~~~~  215 (224)
                      ..+++|||+    |.++..|++++....+   + .|++++++++++|+++..  +   + ..+++.   +.|+|+.+|..
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~   99 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQV   99 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCH
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCc
Confidence            578999999    9999999999988623   3 899999999999987521  1   1 233332   57999998864

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=93.64  E-value=0.09  Score=47.07  Aligned_cols=63  Identities=11%  Similarity=0.034  Sum_probs=45.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhh-ccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGS-TKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~-~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+.-.+.+.. +.  +.+|+|++...+.... +...-..+.+.++|+|+..+..
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~-~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Pl  237 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARG-FGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPG  237 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHT-TTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCC
T ss_pred             CCCEEEEEEeChhHHHHHHHHHH-CCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCC
Confidence            46799999999999999999875 44  4889998765443322 1111245667799999988753

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=93.63  E-value=0.094  Score=46.29  Aligned_cols=63  Identities=8%  Similarity=-0.058  Sum_probs=45.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhh----c--c---CC-----CcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGS----T--K---KG-----MATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~----~--~---~g-----~~~~~v~~advvv~~~~  214 (224)
                      ...+++|||+|.+|......+...-  ++.+|++++++++..+.    .  .   ..     -..+++.+||+||.+.+
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~~aD~VI~avg   91 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNYEYLQNSDVVIITAG   91 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCHHHHCCCCEEEEcCC
Confidence            5578999999999999776665542  35999999988775331    1  0   11     13578999999999875

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=93.58  E-value=0.085  Score=46.62  Aligned_cols=61  Identities=15%  Similarity=0.047  Sum_probs=42.3

Q ss_pred             CCcEEEEEecCHhHHH-HHHHHHHhCC--c-EEEeCCcchHHhhhhccCCC-----cccccc--cCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYI-HAKAFHASLK--L-KKYNRGLTEGTVTGSTKKGM-----ATEDVI--TAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~-hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~~g~-----~~~~v~--~advvv~~~~~  215 (224)
                      +..+++|||+|.+|+. |+.++...-.  + -||+|+++++   +++..+.     ..+-+.  +.|+|+.+|..
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~---~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   75 (362)
T 3fhl_A            4 EIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELS---KERYPQASIVRSFKELTEDPEIDLIVVNTPD   75 (362)
T ss_dssp             CCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGG---GTTCTTSEEESCSHHHHTCTTCCEEEECSCG
T ss_pred             CceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH---HHhCCCCceECCHHHHhcCCCCCEEEEeCCh
Confidence            4578999999999996 9999877533  3 8999998873   3322122     223333  37999988865

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=93.49  E-value=0.076  Score=49.38  Aligned_cols=64  Identities=11%  Similarity=0.161  Sum_probs=50.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc-----CC-------------C-----cccccccCc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK-----KG-------------M-----ATEDVITAK  207 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~-----~g-------------~-----~~~~v~~ad  207 (224)
                      .+.+++|||+|.+|......|... +++.+|+|++++.+.+.+..     .|             +     ..+++.++|
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aD   86 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGD   86 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCC
Confidence            578999999999999999998876 44699999999998887631     12             1     124678999


Q ss_pred             EEEEeccc
Q psy13395        208 LIYDKYQA  215 (224)
Q Consensus       208 vvv~~~~~  215 (224)
                      +||.+...
T Consensus        87 vviiaVpt   94 (478)
T 2y0c_A           87 VQFIAVGT   94 (478)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEeCC
Confidence            99998654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=93.49  E-value=0.09  Score=48.49  Aligned_cols=66  Identities=8%  Similarity=0.055  Sum_probs=50.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC-----------------C-C-cccccccCcEEEE
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK-----------------G-M-ATEDVITAKLIYD  211 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~-----------------g-~-~~~~v~~advvv~  211 (224)
                      ....+.|||+|-+|......|... +++.+|+|++++.+.+.+...                 | + ...++.+||+||.
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvii   89 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFII   89 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEEE
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEEE
Confidence            567899999999999999999887 556999999999999987321                 1 1 1234668999999


Q ss_pred             eccccc
Q psy13395        212 KYQAQH  217 (224)
Q Consensus       212 ~~~~~~  217 (224)
                      +.....
T Consensus        90 ~VpTp~   95 (431)
T 3ojo_A           90 AVPTPN   95 (431)
T ss_dssp             CCCCCB
T ss_pred             EeCCCc
Confidence            876543

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=93.37  E-value=0.092  Score=46.55  Aligned_cols=62  Identities=11%  Similarity=0.055  Sum_probs=44.0

Q ss_pred             CcEEEEEecCHhHH-HHHHHHHHhCC--c-EEEeCCcchHHhhhhccCCC----ccccc-c--cCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAY-IHAKAFHASLK--L-KKYNRGLTEGTVTGSTKKGM----ATEDV-I--TAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~-~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~~g~----~~~~v-~--~advvv~~~~~  215 (224)
                      ..+++|||+|..+. .|+.++.. -.  + -|++|+++++++|+++..+.    ..+++ .  +-|+|+.+|..
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~-~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~   98 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLR-AGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVS   98 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHH-TTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCH
T ss_pred             CcEEEEECcCHHHHHHHHHHhhc-CCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence            46899999999885 45666553 22  3 89999999999999864322    23333 2  47999988764

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=93.37  E-value=0.037  Score=48.88  Aligned_cols=62  Identities=16%  Similarity=0.176  Sum_probs=45.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC--cccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM--ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~--~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+.-.+.+...- .+..|+|+++..+.+... .+.  ..+.+.++|||+...-
T Consensus       138 ~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~l~ell~~aDiV~l~~P  202 (315)
T 3pp8_A          138 EEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY-VGREELRAFLNQTRVLINLLP  202 (315)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE-ESHHHHHHHHHTCSEEEECCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh-cccCCHHHHHhhCCEEEEecC
Confidence            4689999999999999999887542 348999998765443321 111  4566779999998754

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=93.33  E-value=0.19  Score=44.67  Aligned_cols=64  Identities=14%  Similarity=-0.025  Sum_probs=47.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhh----cc---CCC-----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGS----TK---KGM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~----~~---~g~-----~~~~v~~advvv~~~~~  215 (224)
                      ...+++|||+|.+|...+..+...--   +.++++++++++..+.    ..   ..+     ..+++.+|||||.+-+.
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            67899999999999999888776532   4999999988764432    11   122     47899999999988664

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=93.30  E-value=0.079  Score=46.99  Aligned_cols=63  Identities=13%  Similarity=0.164  Sum_probs=47.4

Q ss_pred             CCcEEEEEe-cCHhHHH-HH----HHHHHhCCc------------EEEeCCcchHHhhhhccCCC-----cccccc---c
Q psy13395        152 KDLVLAIMG-SGAQAYI-HA----KAFHASLKL------------KKYNRGLTEGTVTGSTKKGM-----ATEDVI---T  205 (224)
Q Consensus       152 ~~~~l~iiG-aG~QA~~-hl----~a~~~v~~i------------~v~~R~~~~a~~~a~~~~g~-----~~~~v~---~  205 (224)
                      +.-+++||| +|.+|.. |+    +++...-.+            .|++|+++++++++++. |+     ..+++.   +
T Consensus         5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~-~~~~~~~~~~~ll~~~~   83 (383)
T 3oqb_A            5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRF-NIARWTTDLDAALADKN   83 (383)
T ss_dssp             EEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHT-TCCCEESCHHHHHHCSS
T ss_pred             ceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHh-CCCcccCCHHHHhcCCC
Confidence            467899999 9999998 99    888876533            29999999999998753 22     223332   4


Q ss_pred             CcEEEEeccc
Q psy13395        206 AKLIYDKYQA  215 (224)
Q Consensus       206 advvv~~~~~  215 (224)
                      -|+|+.+|..
T Consensus        84 iD~V~i~tp~   93 (383)
T 3oqb_A           84 DTMFFDAATT   93 (383)
T ss_dssp             CCEEEECSCS
T ss_pred             CCEEEECCCc
Confidence            7888888763

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=93.25  E-value=0.12  Score=45.04  Aligned_cols=61  Identities=16%  Similarity=0.036  Sum_probs=43.8

Q ss_pred             CcEEEEEec-CHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCC----ccccc-----------ccCcEEEEec
Q psy13395        153 DLVLAIMGS-GAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGM----ATEDV-----------ITAKLIYDKY  213 (224)
Q Consensus       153 ~~~l~iiGa-G~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~----~~~~v-----------~~advvv~~~  213 (224)
                      ..+++|||+ |..|..|++++... +.   .|++++++++ .+++...+.    ..+++           .+-|+|+-+|
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~t   80 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEV-GGVLVASLDPATNVG-LVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIAS   80 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCG-GGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECS
T ss_pred             ceEEEEECCChHHHHHHHHHHHhC-CCEEEEEEcCCHHHH-HHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECC
Confidence            468999999 68999999999986 53   8999999885 344432222    12222           4789999888


Q ss_pred             cc
Q psy13395        214 QA  215 (224)
Q Consensus       214 ~~  215 (224)
                      ..
T Consensus        81 P~   82 (312)
T 3o9z_A           81 PN   82 (312)
T ss_dssp             CG
T ss_pred             Cc
Confidence            64

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=93.22  E-value=0.18  Score=46.92  Aligned_cols=63  Identities=17%  Similarity=0.065  Sum_probs=45.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHh--------hhhcc-----------C----CCcccccccCc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTV--------TGSTK-----------K----GMATEDVITAK  207 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~--------~a~~~-----------~----g~~~~~v~~ad  207 (224)
                      ..++|+|||+|.+|......+...- ++.+|+++++++..        +.++.           .    ....+++.+||
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~al~~aD  132 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFHKLSNCD  132 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGGGCTTCS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHHHHccCC
Confidence            3578999999999999888877642 35999999985532        21110           0    01346789999


Q ss_pred             EEEEecc
Q psy13395        208 LIYDKYQ  214 (224)
Q Consensus       208 vvv~~~~  214 (224)
                      +||.+.-
T Consensus       133 lVIeAVp  139 (460)
T 3k6j_A          133 LIVESVI  139 (460)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9999875

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=93.18  E-value=0.1  Score=46.64  Aligned_cols=61  Identities=13%  Similarity=0.072  Sum_probs=43.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+.-.+.+...- .+.+|+|++++...+  ....-..+.+.+||+|+....
T Consensus       170 ~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~~~~sl~ell~~aDvVil~vP  231 (340)
T 4dgs_A          170 KGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDW--IAHQSPVDLARDSDVLAVCVA  231 (340)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTTSCC--EECSSHHHHHHTCSEEEECC-
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccccCc--eecCCHHHHHhcCCEEEEeCC
Confidence            4689999999999999999877532 248999998763221  111225667789999998764

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=93.10  E-value=0.22  Score=43.94  Aligned_cols=64  Identities=14%  Similarity=-0.025  Sum_probs=47.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhh----cc---CCC-----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGS----TK---KGM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~----~~---~g~-----~~~~v~~advvv~~~~~  215 (224)
                      ...+++|||+|..+...+..+..-.-   +.++++++++++..+.    ..   ..+     ..+++.+||+||.+.+.
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~   86 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCC
Confidence            46789999999999987776654432   3899999888765433    11   011     57889999999998765

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=93.09  E-value=0.094  Score=46.33  Aligned_cols=60  Identities=13%  Similarity=0.113  Sum_probs=41.5

Q ss_pred             CcEEEEEecCHhHHH-HHHHHHHhCC--c-EEEeCCcchHHhhhhccCCC-----cccccc--cCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYI-HAKAFHASLK--L-KKYNRGLTEGTVTGSTKKGM-----ATEDVI--TAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~-hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~~g~-----~~~~v~--~advvv~~~~~  215 (224)
                      ..+++|||+|.+|+. |++++...-.  + .|++|+++++   +++..+.     ..+-+.  +.|+|+.+|..
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~---~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   75 (358)
T 3gdo_A            5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEV---KRDFPDAEVVHELEEITNDPAIELVIVTTPS   75 (358)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHH---HHHCTTSEEESSTHHHHTCTTCCEEEECSCT
T ss_pred             cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH---HhhCCCCceECCHHHHhcCCCCCEEEEcCCc
Confidence            468999999999996 9998876533  3 8999998763   2222122     223333  57999998864

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=93.08  E-value=0.12  Score=45.15  Aligned_cols=61  Identities=15%  Similarity=0.074  Sum_probs=44.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+...+.+...- .+.+|+|++++ +.+.+  .|.    ..+.+.++|+|+.....
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~--~g~~~~~l~ell~~aDvV~l~~p~  206 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKE--VNGKFVDLETLLKESDVVTIHVPL  206 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHH--TTCEECCHHHHHHHCSEEEECCCC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhh--cCccccCHHHHHhhCCEEEEecCC
Confidence            5679999999999999999887532 24899999876 32222  122    34556799999998653

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=93.05  E-value=0.081  Score=46.91  Aligned_cols=62  Identities=11%  Similarity=0.137  Sum_probs=44.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhc--cCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGST--KKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~--~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+...+.+.. +.  +.+|+|++++.+...+.  ...-..+.+.++|||+....
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P  209 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQG-WGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALP  209 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTT-SCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHH-CCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCC
Confidence            46799999999999999988654 44  38899987554333221  11224566779999998865

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.02  E-value=0.2  Score=43.51  Aligned_cols=61  Identities=15%  Similarity=0.139  Sum_probs=43.9

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhhcc---C----CC-----cccccccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGSTK---K----GM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~~~---~----g~-----~~~~v~~advvv~~~~~  215 (224)
                      +++|||+|.++...+..+...-.   +.+|++++++++..+...   .    ..     ..+++.+||+||.+.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~   77 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGA   77 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC--
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCC
Confidence            68999999999998887766533   499999988765543311   0    11     45788999999999853

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.95  E-value=0.12  Score=50.46  Aligned_cols=64  Identities=16%  Similarity=0.058  Sum_probs=45.9

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---------cCC-----------------Cccccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---------KKG-----------------MATEDVIT  205 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---------~~g-----------------~~~~~v~~  205 (224)
                      .++|+|||+|.+|......+... +++.+|+|+++.++...+.         ..|                 ...+++.+
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~  391 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRD  391 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGGTT
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHHCC
Confidence            45799999999999888887764 3459999999887653210         011                 13467889


Q ss_pred             CcEEEEecccc
Q psy13395        206 AKLIYDKYQAQ  216 (224)
Q Consensus       206 advvv~~~~~~  216 (224)
                      +|+||.+.-.+
T Consensus       392 aDlVIeaVpe~  402 (725)
T 2wtb_A          392 VDMVIEAVIEN  402 (725)
T ss_dssp             CSEEEECCCSC
T ss_pred             CCEEEEcCcCC
Confidence            99999987543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=92.94  E-value=0.15  Score=47.80  Aligned_cols=66  Identities=11%  Similarity=-0.057  Sum_probs=49.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccC--CCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKK--GMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~--g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|+|+|.+|+..++.+...-- +.+++|++++++..+....  .-..+.+..+|+|+++++..+
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~atG~~~  332 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNKD  332 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECSSCSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCCCChh
Confidence            57899999999999999999887542 4888999887765544211  114556678999999887554

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=92.93  E-value=0.14  Score=44.62  Aligned_cols=61  Identities=18%  Similarity=0.140  Sum_probs=43.6

Q ss_pred             CcEEEEEec-CHhHHHHHHHHHHhCC--c-EEEeCCcchHHhhhhccCCC----ccccc------------ccCcEEEEe
Q psy13395        153 DLVLAIMGS-GAQAYIHAKAFHASLK--L-KKYNRGLTEGTVTGSTKKGM----ATEDV------------ITAKLIYDK  212 (224)
Q Consensus       153 ~~~l~iiGa-G~QA~~hl~a~~~v~~--i-~v~~R~~~~a~~~a~~~~g~----~~~~v------------~~advvv~~  212 (224)
                      ..+++|||+ |.+|..|++++... +  + -+++|+++++ .+++...+.    ..+++            .+-|+|+-+
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~   80 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDT-GNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSIC   80 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEEC
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhC-CCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEEC
Confidence            468999999 78999999999986 4  3 8999998874 444432222    22222            467999888


Q ss_pred             ccc
Q psy13395        213 YQA  215 (224)
Q Consensus       213 ~~~  215 (224)
                      |..
T Consensus        81 tP~   83 (318)
T 3oa2_A           81 SPN   83 (318)
T ss_dssp             SCG
T ss_pred             CCc
Confidence            764

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=92.88  E-value=0.14  Score=44.85  Aligned_cols=61  Identities=13%  Similarity=0.002  Sum_probs=44.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+...+.+...- .+.+|+|++++.+ +.+  .|.    ..+.+.++|+|+.....
T Consensus       141 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~--~g~~~~~l~ell~~aDvVvl~~P~  206 (313)
T 2ekl_A          141 AGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AEK--INAKAVSLEELLKNSDVISLHVTV  206 (313)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HHH--TTCEECCHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HHh--cCceecCHHHHHhhCCEEEEeccC
Confidence            5689999999999999999887532 2489999987642 211  222    34566799999998753

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=92.86  E-value=0.14  Score=45.28  Aligned_cols=64  Identities=16%  Similarity=0.057  Sum_probs=45.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc--cCCCcccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST--KKGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~--~~g~~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|||+|.+|+...+.+...- .+.+|+|+++. +...+.  ...-..+.+.++|+|+.++..+
T Consensus       145 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~l~e~l~~aDiVil~vp~~  211 (333)
T 2d0i_A          145 YGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYMDIDELLEKSDIVILALPLT  211 (333)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEECCHHHHHHHCSEEEECCCCC
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceecCHHHHHhhCCEEEEcCCCC
Confidence            5678999999999999999887542 24999999876 222111  1111345577999999988765

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.86  E-value=0.095  Score=44.35  Aligned_cols=64  Identities=11%  Similarity=0.085  Sum_probs=47.6

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCc-------------------chHHhhhhcc----CC---------C
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGL-------------------TEGTVTGSTK----KG---------M  198 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~-------------------~~a~~~a~~~----~g---------~  198 (224)
                      ..+++|||+|..|..-++.+...-  .|.+++++.                   .|++.++++.    .+         +
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~  110 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALL  110 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccC
Confidence            468999999999999999988764  358999998                   7887776521    11         1


Q ss_pred             c----ccccccCcEEEEecccc
Q psy13395        199 A----TEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       199 ~----~~~v~~advvv~~~~~~  216 (224)
                      .    .+.+.++|+||.++...
T Consensus       111 ~~~~~~~~~~~~DvVi~~~d~~  132 (249)
T 1jw9_B          111 DDAELAALIAEHDLVLDCTDNV  132 (249)
T ss_dssp             CHHHHHHHHHTSSEEEECCSSH
T ss_pred             CHhHHHHHHhCCCEEEEeCCCH
Confidence            1    23456899999998643

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=92.83  E-value=0.18  Score=45.98  Aligned_cols=63  Identities=8%  Similarity=0.027  Sum_probs=44.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh---ccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS---TKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~---~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+...+.+...- .+.+|+|++++.+...+   ....-..+.+.++|||+....
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~P  256 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCP  256 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecC
Confidence            5679999999999999999877532 24889998765543322   111114566779999998865

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=92.78  E-value=0.22  Score=44.01  Aligned_cols=63  Identities=8%  Similarity=0.002  Sum_probs=45.3

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhh----hcc----CC------CcccccccCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTG----STK----KG------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a----~~~----~g------~~~~~v~~advvv~~~~~  215 (224)
                      ..+++|||+|.++...+..+..--  .+.+|++++++++..+    +..    ..      -..+++.+||+||.+.+.
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~   83 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV   83 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence            468999999999998777765532  3599999998875332    210    01      146899999999998664

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=92.75  E-value=0.12  Score=50.41  Aligned_cols=64  Identities=13%  Similarity=0.007  Sum_probs=46.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhh---------ccCC-----------------Ccccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGS---------TKKG-----------------MATEDVI  204 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~---------~~~g-----------------~~~~~v~  204 (224)
                      ..++|+|||+|.+|......+... +++.+|++++++++...+         ...|                 ...+++.
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~  392 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFG  392 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGG
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHHC
Confidence            467899999999999988887765 346999999998765311         0112                 1236788


Q ss_pred             cCcEEEEeccc
Q psy13395        205 TAKLIYDKYQA  215 (224)
Q Consensus       205 ~advvv~~~~~  215 (224)
                      ++|+||.+.-.
T Consensus       393 ~aDlVIeaV~e  403 (715)
T 1wdk_A          393 NVDLVVEAVVE  403 (715)
T ss_dssp             GCSEEEECCCS
T ss_pred             CCCEEEEcCCC
Confidence            99999998753

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=92.69  E-value=0.27  Score=43.58  Aligned_cols=64  Identities=16%  Similarity=0.021  Sum_probs=48.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHh----hhhc--c--CCC-----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTV----TGST--K--KGM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~----~a~~--~--~g~-----~~~~v~~advvv~~~~~  215 (224)
                      +..+++|||+|.+|...+.++...-   .+.++++++++++.    |.+.  .  .++     ..+++.+|||||.+-+.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            5678999999999999988887653   24999999988766    3332  1  121     46789999999988664

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=92.69  E-value=0.14  Score=44.72  Aligned_cols=61  Identities=13%  Similarity=0.057  Sum_probs=43.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+...+.+...- .+.+|+|+++ .+  ......-..+.+.++|+|+..+..
T Consensus       123 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~--~~~~~~~l~ell~~aDvV~l~~P~  184 (303)
T 1qp8_A          123 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG--PWRFTNSLEEALREARAAVCALPL  184 (303)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS--SSCCBSCSHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc--CcccCCCHHHHHhhCCEEEEeCcC
Confidence            5678999999999999999877532 2488999886 21  111111245667899999988754

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.68  E-value=0.18  Score=45.82  Aligned_cols=39  Identities=8%  Similarity=0.113  Sum_probs=32.3

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhh
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVT  191 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~  191 (224)
                      ..+|+|||+|..|...++.+...-- +.+|+|++++.+.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            6799999999999999998776532 49999999887655

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=92.66  E-value=0.15  Score=45.57  Aligned_cols=62  Identities=15%  Similarity=0.098  Sum_probs=43.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh-ccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS-TKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~-~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++|+|||.|.+|+.-.+.+...- .+..|+|+++..  +.. ....-..+.+.+||||+..+..
T Consensus       147 ~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~~~~~l~ell~~aDvV~l~~Pl  210 (343)
T 2yq5_A          147 YNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE--FEPFLTYTDFDTVLKEADIVSLHTPL  210 (343)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG--GTTTCEECCHHHHHHHCSEEEECCCC
T ss_pred             CCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh--hhccccccCHHHHHhcCCEEEEcCCC
Confidence            3679999999999999999877542 248999998652  111 1111245667799999988763

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=92.64  E-value=0.17  Score=45.08  Aligned_cols=65  Identities=14%  Similarity=0.058  Sum_probs=46.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCC----------CcccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKG----------MATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g----------~~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|+|+|..|+.-++.+...- .+.+|+|++++.+.+.+....          -..+.+.++|+||.+.+..
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~  240 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVP  240 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCC
Confidence            4689999999999999999887643 249999999887665442110          0234567899999988754

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=92.63  E-value=0.16  Score=44.65  Aligned_cols=63  Identities=13%  Similarity=0.073  Sum_probs=43.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeC-CcchHHhhhh---ccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNR-GLTEGTVTGS---TKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R-~~~~a~~~a~---~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+...+.+...- .+.+|+| ++++. ...+   ....-..+.+.++|+|+..+..
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVil~~p~  212 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEASYQATFHDSLDSLLSVSQFFSLNAPS  212 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHTCEECSSHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhhhcCcEEcCCHHHHHhhCCEEEEeccC
Confidence            5678999999999999999887532 2489999 87653 2111   1111134566799999998753

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=92.61  E-value=0.056  Score=50.64  Aligned_cols=64  Identities=9%  Similarity=0.172  Sum_probs=43.5

Q ss_pred             CcEEEEEecCHhHHHH--HHHHHHh-----CCcEEEeCCcchHHhhhh---cc---CC----C----c-ccccccCcEEE
Q psy13395        153 DLVLAIMGSGAQAYIH--AKAFHAS-----LKLKKYNRGLTEGTVTGS---TK---KG----M----A-TEDVITAKLIY  210 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~h--l~a~~~v-----~~i~v~~R~~~~a~~~a~---~~---~g----~----~-~~~v~~advvv  210 (224)
                      ..+++|||+|.+++..  +..+...     ..+.+|++++++++....   +.   .+    +    . .+++.+||+||
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            3579999999986555  4455432     234999999998765332   10   11    1    2 47889999999


Q ss_pred             Eecccc
Q psy13395        211 DKYQAQ  216 (224)
Q Consensus       211 ~~~~~~  216 (224)
                      .+.+.+
T Consensus        83 iaagv~   88 (480)
T 1obb_A           83 NTAMVG   88 (480)
T ss_dssp             ECCCTT
T ss_pred             ECCCcc
Confidence            999763

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=92.59  E-value=0.1  Score=48.30  Aligned_cols=89  Identities=15%  Similarity=0.191  Sum_probs=58.5

Q ss_pred             eCccchhhhhhhhhHHhh-hhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhC----CcEEEe----CC--cchHHh---
Q psy13395        125 EGTEITKWRTAAASVVAT-KHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASL----KLKKYN----RG--LTEGTV---  190 (224)
Q Consensus       125 Dg~~lT~~RTaA~Salaa-~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~----~i~v~~----R~--~~~a~~---  190 (224)
                      |....|+ =|..++.+.+ +....+  -...+++|+|+|..|+.-++++...-    .|.|+|    |+  .++++.   
T Consensus       160 dD~~gtg-ntd~aG~~~AL~~~g~~--l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~  236 (439)
T 2dvm_A          160 DDQQGTA-AVVLAGLLNALKVVGKK--ISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEK  236 (439)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHTCC--TTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHH
T ss_pred             CCCcEEe-ehHHHHHHHHHHHhCCC--ccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhH
Confidence            4556776 5555555544 332211  04578999999999999999998874    358999    88  433322   


Q ss_pred             hh-------hcc-----CCCcccccccCcEEEEecccc
Q psy13395        191 TG-------STK-----KGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       191 ~a-------~~~-----~g~~~~~v~~advvv~~~~~~  216 (224)
                      +.       ...     .+-..+.+.++||||.+|...
T Consensus       237 L~~~~~~~a~~~~~~~~~~~L~e~l~~aDVlInaT~~~  274 (439)
T 2dvm_A          237 LFPYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPG  274 (439)
T ss_dssp             HSTTCHHHHTTSCTTCCCSSHHHHHTTCSEEEECSCCC
T ss_pred             HHHHHHHHhhccccccccccHHHHhccCCEEEEcCCCc
Confidence            22       211     112467788999999999874

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=92.44  E-value=0.22  Score=43.72  Aligned_cols=64  Identities=14%  Similarity=0.000  Sum_probs=47.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhh----cc---CCC-----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGS----TK---KGM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~----~~---~g~-----~~~~v~~advvv~~~~~  215 (224)
                      ...+++|||+|..+...+..+..-.-   +.++++++++++..+.    ..   ..+     ..+++.+||+||.+.+.
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~   82 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGA   82 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCC
Confidence            34689999999999987777665532   3899999888765433    11   011     57889999999998765

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=92.40  E-value=0.16  Score=45.20  Aligned_cols=63  Identities=17%  Similarity=0.120  Sum_probs=43.0

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhcc-----------------CCC----cccc-cccCcE
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTK-----------------KGM----ATED-VITAKL  208 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~-----------------~g~----~~~~-v~~adv  208 (224)
                      .+++|+|+|..|+.+++++.....+   .+.+++++....++...                 .++    ..++ ..+.|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            3799999999999999998765444   66788766554444311                 111    1122 358999


Q ss_pred             EEEecccc
Q psy13395        209 IYDKYQAQ  216 (224)
Q Consensus       209 vv~~~~~~  216 (224)
                      |+.+|+..
T Consensus        82 V~~atp~~   89 (337)
T 1cf2_P           82 VIDCTPEG   89 (337)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCch
Confidence            99999864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=92.39  E-value=0.29  Score=42.59  Aligned_cols=62  Identities=10%  Similarity=-0.008  Sum_probs=46.0

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhh----c------cCC----CcccccccCcEEEEecc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGS----T------KKG----MATEDVITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~----~------~~g----~~~~~v~~advvv~~~~  214 (224)
                      ..+++|||+|.+|......+...-  .+.+|++++++++..+.    .      ...    -..+++.+||+||.+.+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~a~~~aDiVi~avg   81 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDYADISGSDVVIITAS   81 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhCCCCEEEEeCC
Confidence            468999999999999888877653  45999999988776421    1      001    13478899999999884

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=92.38  E-value=0.2  Score=44.26  Aligned_cols=63  Identities=14%  Similarity=0.117  Sum_probs=44.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchH-HhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEG-TVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a-~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+...+.+...- .+.+|+|++++. +.++. ...-..+.+.++|+|+.....
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~l~ell~~aDvV~l~~p~  209 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGY-YVDSLDDLYKQADVISLHVPD  209 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTC-BCSCHHHHHHHCSEEEECSCC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhHHhhCe-ecCCHHHHHhhCCEEEEcCCC
Confidence            4679999999999999999887532 248999988764 21211 111234566799999998763

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=92.32  E-value=0.14  Score=45.97  Aligned_cols=62  Identities=13%  Similarity=0.048  Sum_probs=42.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh---ccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS---TKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~---~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+...+.+...- .+.+|+|++.. +...+   +...-..+.+.++|+|+....
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDiV~l~~P  224 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERARADGFAVAESKDALFEQSDVLSVHLR  224 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHHHTTCEECSSHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHHhcCceEeCCHHHHHhhCCEEEEecc
Confidence            4679999999999999999876532 24889988633 22221   111124566779999998764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.31  E-value=0.19  Score=43.10  Aligned_cols=62  Identities=26%  Similarity=0.188  Sum_probs=45.2

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC--------ccccc-ccCcEEEEeccccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM--------ATEDV-ITAKLIYDKYQAQH  217 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~--------~~~~v-~~advvv~~~~~~~  217 (224)
                      .+++|||+|.+|..-...+...- .+.+|+|+++..+...  ..|.        ..+++ ..+|+||-++-+++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~   74 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYT--VPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQ   74 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEES--STTSCCEEEEEEEGGGCCSCEEEEEECSCGGG
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEe--cCCeeccceecCchHhcCCCCCEEEEeCCccC
Confidence            46899999999998888887653 4699999987654321  1231        23444 78999999988775

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=92.19  E-value=0.23  Score=44.08  Aligned_cols=61  Identities=16%  Similarity=0.088  Sum_probs=43.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+...+.+...- .+.+|+|++++.  .+. ..|.    ..+.+.++|+|+.....
T Consensus       164 ~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~-~~g~~~~~l~ell~~aDvV~l~~P~  229 (335)
T 2g76_A          164 NGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE--VSA-SFGVQQLPLEEIWPLCDFITVHTPL  229 (335)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH--HHH-HTTCEECCHHHHGGGCSEEEECCCC
T ss_pred             CcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh--hhh-hcCceeCCHHHHHhcCCEEEEecCC
Confidence            5679999999999999999877532 248899987663  221 1122    44667799999988654

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=92.19  E-value=0.33  Score=42.29  Aligned_cols=61  Identities=10%  Similarity=-0.004  Sum_probs=44.8

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhh----hhcc--CC--------CcccccccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVT----GSTK--KG--------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~----a~~~--~g--------~~~~~v~~advvv~~~~~  215 (224)
                      +++|||+|..+...+..+..--.   +.+|++++++++..    .+..  .+        -..+++.+||+||.+.+.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aDiVViaag~   79 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCCHHHhCCCCEEEECCCC
Confidence            58999999999998887766543   49999999887522    1211  11        147889999999998765

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.19  E-value=0.51  Score=43.02  Aligned_cols=63  Identities=13%  Similarity=0.118  Sum_probs=49.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCC----cchH--------HhhhhccC-----CCcccccccCcEEEEe
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRG----LTEG--------TVTGSTKK-----GMATEDVITAKLIYDK  212 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~----~~~a--------~~~a~~~~-----g~~~~~v~~advvv~~  212 (224)
                      ...+++|+|+|..|..-++.+...-  ++.+++|+    .++.        +.|+++..     +-..++|.+|||+|.+
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~  270 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGV  270 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEEC
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEe
Confidence            6889999999999999999888764  25888998    6554        56666422     3378999999999999


Q ss_pred             cc
Q psy13395        213 YQ  214 (224)
Q Consensus       213 ~~  214 (224)
                      +.
T Consensus       271 Sa  272 (388)
T 1vl6_A          271 SR  272 (388)
T ss_dssp             SC
T ss_pred             CC
Confidence            75

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=92.14  E-value=0.2  Score=44.80  Aligned_cols=64  Identities=16%  Similarity=0.125  Sum_probs=43.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHh--hhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTV--TGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~--~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+...+.+...- .+.+|+|++++..+  +.-....-..+.+.++|||+.....
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~  233 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGL  233 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCC
Confidence            5679999999999999999887532 24889998764221  1001111134567799999987653

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=92.12  E-value=0.24  Score=43.32  Aligned_cols=61  Identities=13%  Similarity=0.031  Sum_probs=45.0

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhh----cc---CCC-----cccccccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGS----TK---KGM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~----~~---~g~-----~~~~v~~advvv~~~~~  215 (224)
                      +++|||+|..+..-+..+..-..   +.++++++++++..+.    ..   ..+     ..+++.+||+||.+.+.
T Consensus         2 KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~   77 (310)
T 2xxj_A            2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGV   77 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCC
Confidence            68999999999987777665432   3899999887765433    11   011     57889999999998765

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=91.85  E-value=0.23  Score=44.11  Aligned_cols=63  Identities=11%  Similarity=0.092  Sum_probs=42.7

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhcc-----CC-----------C----cc-cccccCcEE
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTK-----KG-----------M----AT-EDVITAKLI  209 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~-----~g-----------~----~~-~~v~~advv  209 (224)
                      .+++|+|+|.+|+.|++++...-.+   .+.+++++....++...     .+           +    .. +...+.|+|
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            3799999999999999998753223   77888877665544321     01           0    00 112478999


Q ss_pred             EEecccc
Q psy13395        210 YDKYQAQ  216 (224)
Q Consensus       210 v~~~~~~  216 (224)
                      +.+|+..
T Consensus        82 ~~aTp~~   88 (340)
T 1b7g_O           82 VDTTPNG   88 (340)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            9999865

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=91.81  E-value=0.067  Score=49.60  Aligned_cols=64  Identities=11%  Similarity=0.126  Sum_probs=43.9

Q ss_pred             CcEEEEEecCHh-HHHHHHHHHHh------CCcEEEeCCc--chHHhh---hhcc---CCC--------c-ccccccCcE
Q psy13395        153 DLVLAIMGSGAQ-AYIHAKAFHAS------LKLKKYNRGL--TEGTVT---GSTK---KGM--------A-TEDVITAKL  208 (224)
Q Consensus       153 ~~~l~iiGaG~Q-A~~hl~a~~~v------~~i~v~~R~~--~~a~~~---a~~~---~g~--------~-~~~v~~adv  208 (224)
                      ..+++|||+|.. +...+..+...      ..+.+|++++  ++++..   ++..   .+.        . .+++.+||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            457999999998 55555555552      2248999999  887652   2211   111        2 478999999


Q ss_pred             EEEecccc
Q psy13395        209 IYDKYQAQ  216 (224)
Q Consensus       209 vv~~~~~~  216 (224)
                      ||.+.+.+
T Consensus        87 VVitagv~   94 (450)
T 1s6y_A           87 VTTQFRVG   94 (450)
T ss_dssp             EEECCCTT
T ss_pred             EEEcCCCC
Confidence            99998865

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=91.77  E-value=0.17  Score=39.27  Aligned_cols=62  Identities=15%  Similarity=0.067  Sum_probs=41.3

Q ss_pred             CcEEEEEec----CHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhccCCCcccccc-cCcEEEEecccc
Q psy13395        153 DLVLAIMGS----GAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKKGMATEDVI-TAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGa----G~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~~g~~~~~v~-~advvv~~~~~~  216 (224)
                      +++++|||+    |..++.+++.+.. ....||..++++.+.+...-.. ..+++. ..|++|..+.++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~-~G~~v~~Vnp~~~~i~G~~~y~-sl~~l~~~vDlvvi~vp~~   88 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLE-HGYDVYPVNPKYEEVLGRKCYP-SVLDIPDKIEVVDLFVKPK   88 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHH-TTCEEEEECTTCSEETTEECBS-SGGGCSSCCSEEEECSCHH
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHH-CCCEEEEECCCCCeECCeeccC-CHHHcCCCCCEEEEEeCHH
Confidence            689999999    6899999998765 3457998888753222111111 233333 689998887653

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=91.72  E-value=0.26  Score=43.83  Aligned_cols=64  Identities=13%  Similarity=-0.062  Sum_probs=46.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhh----c--cC-------CCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGS----T--KK-------GMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~----~--~~-------g~~~~~v~~advvv~~~~~  215 (224)
                      ...+++|||+|.+|...+..++.--   .+.+++++.++++..+.    .  ..       .-..+++.+|||||.+-+.
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~~~~aDiVvi~aG~   97 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGA   97 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGGGTTEEEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence            5789999999999998877766532   13999999887765432    1  11       1146789999999877554

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=91.68  E-value=0.48  Score=42.02  Aligned_cols=38  Identities=16%  Similarity=0.095  Sum_probs=28.0

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc---EEEeC--CcchHHhh
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNR--GLTEGTVT  191 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R--~~~~a~~~  191 (224)
                      .+++|+|+|..|+.++|++...-.+   .|.++  +++.+..+
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l   46 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYM   46 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence            3799999999999999998875334   66665  55554433

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=91.66  E-value=0.21  Score=45.10  Aligned_cols=61  Identities=8%  Similarity=0.196  Sum_probs=42.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhc--cCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGST--KKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~--~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+.-.+.+.. +.  +.+|+|+... +.+.+.  ...-..+.+.++|||+....
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~-fG~~V~~~d~~~~~-~~~~~~g~~~~~l~ell~~aDvV~l~~P  239 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSG-FRARIRVFDPWLPR-SMLEENGVEPASLEDVLTKSDFIFVVAA  239 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTT-SCCEEEEECSSSCH-HHHHHTTCEECCHHHHHHSCSEEEECSC
T ss_pred             CCCEEEEecCCcccHHHHHhhhh-CCCEEEEECCCCCH-HHHhhcCeeeCCHHHHHhcCCEEEEcCc
Confidence            46799999999999999998754 44  3889988633 222221  11224666779999998654

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=91.65  E-value=0.16  Score=45.36  Aligned_cols=64  Identities=13%  Similarity=0.110  Sum_probs=45.3

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh--CCcEEEe---CCcchHHhhhh-cc-------C-C-----------C---ccccccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS--LKLKKYN---RGLTEGTVTGS-TK-------K-G-----------M---ATEDVIT  205 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v--~~i~v~~---R~~~~a~~~a~-~~-------~-g-----------~---~~~~v~~  205 (224)
                      .+++|||+|.+|......+...  ..+.+|+   |++++.+.+.+ ..       . +           .   ..+++.+
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            3799999999999998888653  3359999   88777776422 11       0 2           1   1245778


Q ss_pred             CcEEEEeccccc
Q psy13395        206 AKLIYDKYQAQH  217 (224)
Q Consensus       206 advvv~~~~~~~  217 (224)
                      +|+||.++..+.
T Consensus        83 aD~Vilav~~~~   94 (404)
T 3c7a_A           83 ADVVILTVPAFA   94 (404)
T ss_dssp             CSEEEECSCGGG
T ss_pred             CCEEEEeCchHH
Confidence            999999987764

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=91.55  E-value=0.061  Score=47.03  Aligned_cols=62  Identities=5%  Similarity=0.019  Sum_probs=42.0

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCc-chHHhhhhc--cCCC------cccccc---cCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGL-TEGTVTGST--KKGM------ATEDVI---TAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~-~~a~~~a~~--~~g~------~~~~v~---~advvv~~~~~  215 (224)
                      .+++|||+|..+..|++++..-..+ -|+++++ ++++++++.  +.|+      ..+++.   +-|+|+-+|..
T Consensus         3 ~rvgiiG~G~~~~~~~~~l~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~   77 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGLDEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVF   77 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTCCTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSH
T ss_pred             eEEEEEccchhHHHHHHhcCCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence            4799999999999999987111113 8999998 577777652  2232      233332   47999988764

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=91.53  E-value=0.23  Score=43.99  Aligned_cols=63  Identities=11%  Similarity=0.027  Sum_probs=45.0

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhh----hc------cCC----CcccccccCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTG----ST------KKG----MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a----~~------~~g----~~~~~v~~advvv~~~~~  215 (224)
                      ..+++|||+|.++......+..--  .+.+|++++++++..+    +.      ...    -..+++.+||+||.+.+.
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~~a~~~aDiVIiaag~   85 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDYAAIEGADVVIVTAGV   85 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSGGGGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCHHHHCCCCEEEEccCc
Confidence            468999999999998777665442  3599999998875322    21      001    146899999999998764

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=91.47  E-value=0.24  Score=46.31  Aligned_cols=63  Identities=22%  Similarity=0.249  Sum_probs=42.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEe-CCc---chHHhhhh-ccCCC----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYN-RGL---TEGTVTGS-TKKGM----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~-R~~---~~a~~~a~-~~~g~----~~~~v~~advvv~~~~~  215 (224)
                      +.++|+|||.|.||++|..-+..- .+ .+++ |..   ++...+.. +..|+    ..+++..||||+--+..
T Consensus        36 kgK~IaVIGyGsQG~AqAlNLRDS-Gv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~~~eA~~~ADvV~~L~PD  108 (491)
T 3ulk_A           36 QGKKVVIVGCGAQGLNQGLNMRDS-GLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPD  108 (491)
T ss_dssp             TTSEEEEESCSHHHHHHHHHHHHT-TCEEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHGGGCSEEEECSCG
T ss_pred             cCCEEEEeCCChHhHHHHhHHHhc-CCcEEEEeCCCCcccccchHHHHHHCCCEecCHHHHHHhCCEEEEeCCh
Confidence            478999999999999999887764 34 4443 422   11122222 23455    68999999999876643

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=91.38  E-value=0.21  Score=44.02  Aligned_cols=64  Identities=9%  Similarity=-0.030  Sum_probs=46.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhh----c--cCC----C----c-ccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGS----T--KKG----M----A-TEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~----~--~~g----~----~-~~~v~~advvv~~~~  214 (224)
                      ...+++|||+|..|......+..--  .+.+|++++++++..+.    .  ..+    +    . .+++.+||+||.+-+
T Consensus         8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g   87 (331)
T 1pzg_A            8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   87 (331)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccC
Confidence            4568999999999999887777643  35999999988766332    1  111    1    2 347899999999875


Q ss_pred             c
Q psy13395        215 A  215 (224)
Q Consensus       215 ~  215 (224)
                      .
T Consensus        88 ~   88 (331)
T 1pzg_A           88 L   88 (331)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=91.10  E-value=0.38  Score=42.17  Aligned_cols=64  Identities=16%  Similarity=0.003  Sum_probs=43.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhh----hccC--------CCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTG----STKK--------GMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a----~~~~--------g~~~~~v~~advvv~~~~~  215 (224)
                      +..+++|||+|..+...+..+..-..   +.+++.++++++..+    +...        .-..+++.+||+||.+.+.
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~   84 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGA   84 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCC
Confidence            46789999999999998877666532   389999887754322    2110        0157789999999998765

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=90.96  E-value=0.24  Score=43.75  Aligned_cols=61  Identities=13%  Similarity=0.119  Sum_probs=42.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhh-ccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGS-TKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~-~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+...+.+...- .+.+|+|++++.  +.+ ....-..+.+.++|+|+....
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~~~~~~~l~ell~~aDvV~~~~p  207 (331)
T 1xdw_A          145 RNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--IEDYCTQVSLDEVLEKSDIITIHAP  207 (331)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--CTTTCEECCHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--HHhccccCCHHHHHhhCCEEEEecC
Confidence            4678999999999999999887532 248999988654  211 011124466779999998754

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.94  E-value=0.18  Score=41.40  Aligned_cols=64  Identities=13%  Similarity=0.096  Sum_probs=46.0

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---cCC--C----c-ccccccCcEEEEeccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---KKG--M----A-TEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---~~g--~----~-~~~v~~advvv~~~~~~~  217 (224)
                      ..+++|+|+|..|+.-++.+... . +.++++++++.+.+...   ..|  .    . .+.+.+||.||.+|....
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~   83 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS   83 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHH
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcH
Confidence            56899999999999998887653 3 68889999988766521   011  1    1 234889999999987643

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=90.88  E-value=0.45  Score=42.82  Aligned_cols=61  Identities=13%  Similarity=0.151  Sum_probs=45.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCC--Cccccc--ccCcEEEEe
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKG--MATEDV--ITAKLIYDK  212 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g--~~~~~v--~~advvv~~  212 (224)
                      .-++++|+|.|.+|+.-++.+...-- +.+++++++++++++++..+  +..+++  .++||++.+
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~  237 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPC  237 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEEC
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeecc
Confidence            56899999999999999999877643 48999999998888774211  222222  278998865

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=90.82  E-value=0.6  Score=40.38  Aligned_cols=62  Identities=10%  Similarity=0.078  Sum_probs=44.4

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc-------cCC------C----cccccc-cCcEEEEecc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST-------KKG------M----ATEDVI-TAKLIYDKYQ  214 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~-------~~g------~----~~~~v~-~advvv~~~~  214 (224)
                      .+++|||+|.+|..-...+...- ++.+|+|++.  +++.+.       ..|      +    ..+++. .+|+||.++-
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK   80 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK   80 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence            47999999999999988887653 3599999862  444431       112      1    234555 8999999998


Q ss_pred             ccc
Q psy13395        215 AQH  217 (224)
Q Consensus       215 ~~~  217 (224)
                      +++
T Consensus        81 ~~~   83 (320)
T 3i83_A           81 VVE   83 (320)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            775

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=90.76  E-value=0.18  Score=39.25  Aligned_cols=63  Identities=10%  Similarity=0.051  Sum_probs=39.0

Q ss_pred             CcEEEEEec----CHhHHHHHHHHHHhCCcEEEeCCcch--HHhhhhccCCCcccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGS----GAQAYIHAKAFHASLKLKKYNRGLTE--GTVTGSTKKGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGa----G~QA~~hl~a~~~v~~i~v~~R~~~~--a~~~a~~~~g~~~~~v~~advvv~~~~~~  216 (224)
                      +++++|||+    |..++.+++.+... ...||..++++  .+.+.........+.....|+|+..+.++
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~-G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp~~   81 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQ-GYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRNSE   81 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHH-TCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSCST
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHC-CCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeCHH
Confidence            678999999    88999999987654 23466556554  22221111111222234689999888653

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=90.69  E-value=0.55  Score=40.85  Aligned_cols=62  Identities=15%  Similarity=0.057  Sum_probs=44.6

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhc-------c--C----C-CcccccccCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGST-------K--K----G-MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~-------~--~----g-~~~~~v~~advvv~~~~~  215 (224)
                      .+++|||+|.++...+..+...-  .+.++++++++++..+..       .  .    . -..+++.+||+||.+-+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aD~Vi~a~g~   80 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCHHHHCCCCEEEEcCCC
Confidence            47999999999999888776542  348999998877553321       0  1    0 145789999999998654

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=90.52  E-value=0.11  Score=48.38  Aligned_cols=63  Identities=14%  Similarity=0.171  Sum_probs=42.1

Q ss_pred             cEEEEEecCHh-HHHHHHHHHHh---C---CcEEEeCCcchHHhhhh---cc---CCC--------c-ccccccCcEEEE
Q psy13395        154 LVLAIMGSGAQ-AYIHAKAFHAS---L---KLKKYNRGLTEGTVTGS---TK---KGM--------A-TEDVITAKLIYD  211 (224)
Q Consensus       154 ~~l~iiGaG~Q-A~~hl~a~~~v---~---~i~v~~R~~~~a~~~a~---~~---~g~--------~-~~~v~~advvv~  211 (224)
                      .+++|||+|.. +...+..+...   +   .+.+|++++++++...+   ..   .+.        . .+++.+||+||.
T Consensus        29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VVi  108 (472)
T 1u8x_X           29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMA  108 (472)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEEE
Confidence            48999999986 33234444443   2   24999999998766433   11   011        2 478899999999


Q ss_pred             ecccc
Q psy13395        212 KYQAQ  216 (224)
Q Consensus       212 ~~~~~  216 (224)
                      +.+.+
T Consensus       109 aag~~  113 (472)
T 1u8x_X          109 HIRVG  113 (472)
T ss_dssp             CCCTT
T ss_pred             cCCCc
Confidence            98874

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=90.46  E-value=0.45  Score=41.83  Aligned_cols=63  Identities=10%  Similarity=0.024  Sum_probs=44.5

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhc-------c--CC-----CcccccccCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGST-------K--KG-----MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~-------~--~g-----~~~~~v~~advvv~~~~~  215 (224)
                      ..+++|||+|.++......+...-  .+.+|++++++++..+..       .  ..     -..+++.+||+||.+-+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~~aD~Vi~a~g~   82 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGF   82 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhCCCCEEEEeCCC
Confidence            458999999999999666665432  258999999877643321       0  10     135789999999998753

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=90.38  E-value=0.83  Score=39.84  Aligned_cols=64  Identities=9%  Similarity=-0.028  Sum_probs=41.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcc---hHHhhhhcc-CC----CcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLT---EGTVTGSTK-KG----MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~---~a~~~a~~~-~g----~~~~~v~~advvv~~~~~  215 (224)
                      ...+++|||+|.++......+..--.   +.+++++++   .+.++.+-. ..    -..+++.+||+||.+-+.
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~~~l~~aD~Vi~aag~   87 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDLSASAHSKVVIFTVNS   87 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCHHHHCCCCEEEEcCCC
Confidence            45789999999988777666654433   489999875   223333211 01    145889999999998765

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=90.36  E-value=0.42  Score=44.66  Aligned_cols=65  Identities=12%  Similarity=0.129  Sum_probs=46.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCC--Cccccc-----ccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKG--MATEDV-----ITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g--~~~~~v-----~~advvv~~~~~~  216 (224)
                      ..++++|+|+|..|+.-++++...- .+.+++|+.++++++++...+  ...+++     ...||||.+|+..
T Consensus       363 ~~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~~~~~~~~dl~~~~~~~~DilVN~agvg  435 (523)
T 2o7s_A          363 ASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMG  435 (523)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTTC-CEETTTTTTC--CCSEEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceeeHHHhhhccccCceEEEECCCCC
Confidence            3568999999999999999998764 359999999999988864311  111122     2479999999863

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=90.29  E-value=0.61  Score=39.58  Aligned_cols=55  Identities=15%  Similarity=0.095  Sum_probs=37.1

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCC-c-EEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLK-L-KKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~-i-~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~  215 (224)
                      .+++|+|+|.+|+.+++++...-. + -+++|+.+.       ..|+    ..+++.++||||.-|..
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-------~~gv~v~~dl~~l~~~DVvIDft~p   64 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-------TTPYQQYQHIADVKGADVAIDFSNP   64 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC---------CCSCBCSCTTTCTTCSEEEECSCH
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-------cCCCceeCCHHHHhCCCEEEEeCCh
Confidence            479999999999999999876422 3 677887652       1222    12222289999876653

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=90.24  E-value=0.9  Score=39.65  Aligned_cols=64  Identities=16%  Similarity=0.012  Sum_probs=46.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhh----hc--cC--CC-----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTG----ST--KK--GM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a----~~--~~--g~-----~~~~v~~advvv~~~~~  215 (224)
                      ...+++|||+|..+...+..+..-..   +.++++++++++..+    +.  ..  .+     ..+++.+||+||.+.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            45689999999999998877665432   389999887665432    21  11  11     57889999999998865

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=90.23  E-value=0.18  Score=45.79  Aligned_cols=61  Identities=13%  Similarity=0.020  Sum_probs=42.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+.-.+.+...- .+.+|+|..+..+ . .....-..+.+.+||||+..+.
T Consensus       118 ~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-~-~~~~~sl~ell~~aDiV~l~~P  179 (381)
T 3oet_A          118 RDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG-D-EGDFRTLDELVQEADVLTFHTP  179 (381)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-C-CSCBCCHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-c-CcccCCHHHHHhhCCEEEEcCc
Confidence            5789999999999999999887542 2488887544322 0 0111224566779999998875

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=90.20  E-value=0.45  Score=42.42  Aligned_cols=36  Identities=14%  Similarity=-0.031  Sum_probs=26.4

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHH
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGT  189 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~  189 (224)
                      .+++|+|+|.+|+.+++++...-.+   .|.+++++...
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~   41 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEA   41 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHH
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHH
Confidence            3799999999999999998753223   56666655543

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=90.19  E-value=0.3  Score=43.19  Aligned_cols=62  Identities=15%  Similarity=0.098  Sum_probs=43.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchH-HhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEG-TVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a-~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+...+.+...- .+.+|+|++++. +.++.  ..-..+.+.++|+|+.....
T Consensus       144 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--~~~l~ell~~aDvV~~~~P~  207 (333)
T 1dxy_A          144 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFD--YVSLEDLFKQSDVIDLHVPG  207 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCE--ECCHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchhhHhccc--cCCHHHHHhcCCEEEEcCCC
Confidence            4678999999999999999887532 248999988653 11111  11245667799999988654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=90.14  E-value=0.49  Score=40.82  Aligned_cols=62  Identities=19%  Similarity=0.190  Sum_probs=44.6

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc------CC------C----cccccccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK------KG------M----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~------~g------~----~~~~v~~advvv~~~~~~  216 (224)
                      .+++|||+|.+|..-...+...- ++.+|+|+.  .+++.+..      .|      +    ..+++..+|+||-++-++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~D~vilavk~~   80 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEEIGPMDLVLVGLKTF   80 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHHHCCCSEEEECCCGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHHcCCCCEEEEecCCC
Confidence            46999999999999988887753 459999986  35554321      01      1    245567899999999887


Q ss_pred             c
Q psy13395        217 H  217 (224)
Q Consensus       217 ~  217 (224)
                      +
T Consensus        81 ~   81 (312)
T 3hn2_A           81 A   81 (312)
T ss_dssp             G
T ss_pred             C
Confidence            5

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=90.04  E-value=0.41  Score=42.16  Aligned_cols=61  Identities=5%  Similarity=-0.098  Sum_probs=44.6

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhh----hhcc----CC------CcccccccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVT----GSTK----KG------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~----a~~~----~g------~~~~~v~~advvv~~~~~  215 (224)
                      +++|||+|.+|...+..+..--   .+.++++++++++..    .+..    ..      -..+++.+|||||.+.+.
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~   79 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGL   79 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCC
Confidence            5899999999999888776543   249999999886532    2210    01      157899999999988765

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=89.99  E-value=0.38  Score=42.00  Aligned_cols=61  Identities=13%  Similarity=0.091  Sum_probs=43.3

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhc------cC--C------CcccccccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGST------KK--G------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~------~~--g------~~~~~v~~advvv~~~~~  215 (224)
                      +++|||+|.++..-+..+..--  .+.++++++++++..+..      ..  .      -..+++.+||+||.+.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aD~Vi~~ag~   77 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYEDMRGSDIVLVTAGI   77 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHHHhCCCCEEEEeCCC
Confidence            4899999999988776665432  259999998877553321      00  1      145789999999998664

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=89.97  E-value=0.52  Score=41.17  Aligned_cols=55  Identities=9%  Similarity=0.120  Sum_probs=41.7

Q ss_pred             CCcEEEEEecCHh-HHHHHHHHHHhC-C--cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQ-AYIHAKAFHASL-K--LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~Q-A~~hl~a~~~v~-~--i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|.. |+--.+.+.... .  +.+.+|+.+.           ..+.+++|||||+++++.|
T Consensus       157 ~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~-----------L~~~~~~ADIVI~Avg~p~  215 (281)
T 2c2x_A          157 AGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRD-----------LPALTRQADIVVAAVGVAH  215 (281)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSC-----------HHHHHTTCSEEEECSCCTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhH-----------HHHHHhhCCEEEECCCCCc
Confidence            6899999999974 888888777652 2  3776655421           4567789999999999876

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=89.95  E-value=0.26  Score=43.52  Aligned_cols=63  Identities=14%  Similarity=0.062  Sum_probs=45.1

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-------C--c-EEEeCCcchHHh-h-----hhc--cCCC--------ccccc--c
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-------K--L-KKYNRGLTEGTV-T-----GST--KKGM--------ATEDV--I  204 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-------~--i-~v~~R~~~~a~~-~-----a~~--~~g~--------~~~~v--~  204 (224)
                      .-+++|||+|.+|+.|++.+....       .  + .|++|++++++. |     ++.  ..++        ..+++  .
T Consensus         6 ~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~   85 (331)
T 3c8m_A            6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALAR   85 (331)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHS
T ss_pred             EEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCC
Confidence            368999999999999999998753       2  3 899999988765 3     221  1121        23333  3


Q ss_pred             cCcEEEEeccc
Q psy13395        205 TAKLIYDKYQA  215 (224)
Q Consensus       205 ~advvv~~~~~  215 (224)
                      +.||||..|..
T Consensus        86 ~iDvVv~~t~~   96 (331)
T 3c8m_A           86 DFDIVVDATPA   96 (331)
T ss_dssp             SCSEEEECSCC
T ss_pred             CCCEEEECCCC
Confidence            67999999976

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=89.58  E-value=0.24  Score=45.70  Aligned_cols=68  Identities=9%  Similarity=0.087  Sum_probs=52.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC-------CC-----cccccccCcEEEEecccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK-------GM-----ATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~-------g~-----~~~~v~~advvv~~~~~~~~  218 (224)
                      +.-++.|+|+|..|+.-.+.|..-- ++.+.++++++.+.+.++..       +.     ..+-+.+||++|..|.....
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De~   81 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDET   81 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHHH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChHH
Confidence            5678999999999999998876543 35999999999988876421       11     35668899999999987655


Q ss_pred             c
Q psy13395        219 N  219 (224)
Q Consensus       219 ~  219 (224)
                      |
T Consensus        82 N   82 (461)
T 4g65_A           82 N   82 (461)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=89.54  E-value=0.36  Score=42.47  Aligned_cols=64  Identities=8%  Similarity=-0.024  Sum_probs=45.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCC--cchHHhhhh----c-----cC-----CCcccccccCcEEEEec
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRG--LTEGTVTGS----T-----KK-----GMATEDVITAKLIYDKY  213 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~--~~~a~~~a~----~-----~~-----g~~~~~v~~advvv~~~  213 (224)
                      ..++++|||+|.+|...+..+...-  .+.+|+++  +++++..+.    .     ..     .-..+++.+|||||.+.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa   86 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA   86 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence            3568999999999998888776542  35999999  455543332    1     01     11478999999999987


Q ss_pred             cc
Q psy13395        214 QA  215 (224)
Q Consensus       214 ~~  215 (224)
                      +.
T Consensus        87 g~   88 (315)
T 3tl2_A           87 GI   88 (315)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=89.43  E-value=0.49  Score=40.28  Aligned_cols=65  Identities=12%  Similarity=0.111  Sum_probs=48.8

Q ss_pred             CCcEEEEEe-cCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhcc---CC-------C-----cccccccCcEEEEecc
Q psy13395        152 KDLVLAIMG-SGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTK---KG-------M-----ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiG-aG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~---~g-------~-----~~~~v~~advvv~~~~  214 (224)
                      ..++++|+| +|..|+.-++.+...-- +.+++|+.+++++++++.   .+       +     ..+.+.+.|+||.+++
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~ag  197 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGA  197 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECCC
Confidence            457899999 99999999999887532 589999999988877521   12       1     1234556899999997


Q ss_pred             cc
Q psy13395        215 AQ  216 (224)
Q Consensus       215 ~~  216 (224)
                      ..
T Consensus       198 ~g  199 (287)
T 1lu9_A          198 IG  199 (287)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=89.42  E-value=0.35  Score=42.27  Aligned_cols=61  Identities=13%  Similarity=0.042  Sum_probs=40.6

Q ss_pred             CCcEEEEEecCHhHH-HHHHHHHHhCCc---EEEeCCcchHHhhhhccCCCccccc---ccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAY-IHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGMATEDV---ITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~-~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~~~~~v---~~advvv~~~~~  215 (224)
                      +..+++|||+|.+|+ .|++++...-.+   -|++|++++..   -....-..+-+   .+.|+|+-+|..
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~~g---~~~~~~~~~ll~~~~~vD~V~i~tp~   91 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTVEG---VNSYTTIEAMLDAEPSIDAVSLCMPP   91 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCCTT---SEEESSHHHHHHHCTTCCEEEECSCH
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhhcC---CCccCCHHHHHhCCCCCCEEEEeCCc
Confidence            457999999999998 799999886443   88999876421   01111112222   347999888763

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.30  E-value=0.54  Score=42.82  Aligned_cols=66  Identities=12%  Similarity=0.137  Sum_probs=49.6

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC----C--C-----cccccccCcEEEEecccccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK----G--M-----ATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~----g--~-----~~~~v~~advvv~~~~~~~~  218 (224)
                      ..++.|+|+|..|+...+.+...- ++.+.++++++.+.+.+...    |  .     ...-+.+||+||.++.....
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~   81 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT   81 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHH
Confidence            457999999999999999988743 45999999999887765211    1  1     23347899999999876543

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=89.14  E-value=0.48  Score=42.16  Aligned_cols=64  Identities=11%  Similarity=-0.091  Sum_probs=45.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhh----c--cC-------CCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGS----T--KK-------GMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~----~--~~-------g~~~~~v~~advvv~~~~~  215 (224)
                      ...+++|||+|.+|...+..+..--   .+.++++++++++..+.    .  ..       .-..+++.+|||||.+-+.
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~~~daDiVIitaG~   99 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGA   99 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCSCSSCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHHhCCCCEEEEeCCC
Confidence            3478999999999998888776543   24999999887655432    1  00       1145679999999987654

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=89.07  E-value=0.48  Score=44.48  Aligned_cols=62  Identities=13%  Similarity=0.137  Sum_probs=44.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCC----cccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|||.|.+|....+.+...- .+.+|+|++...+ ..+  .|+    ..+.+.++|+|+.++...
T Consensus       141 ~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~--~g~~~~~l~e~~~~aDvV~l~~P~~  207 (529)
T 1ygy_A          141 FGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPAR-AAQ--LGIELLSLDDLLARADFISVHLPKT  207 (529)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHH-HHH--HTCEECCHHHHHHHCSEEEECCCCS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCChhH-HHh--cCcEEcCHHHHHhcCCEEEECCCCc
Confidence            4679999999999999999987642 2488999874322 211  122    345677999999998654

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=88.99  E-value=0.95  Score=39.39  Aligned_cols=55  Identities=4%  Similarity=-0.043  Sum_probs=40.2

Q ss_pred             CCcEEEEEecCH-hHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGA-QAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~-QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|. .|+.-.+.+...-- +.+.++..+.           ..+.+++|||||++++..+
T Consensus       149 ~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~-----------L~~~~~~ADIVI~Avg~p~  205 (276)
T 3ngx_A          149 HENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKD-----------IGSMTRSSKIVVVAVGRPG  205 (276)
T ss_dssp             CSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSC-----------HHHHHHHSSEEEECSSCTT
T ss_pred             CCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCccc-----------HHHhhccCCEEEECCCCCc
Confidence            689999999985 78887777766533 3676654211           4567889999999998754

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=88.92  E-value=0.39  Score=41.36  Aligned_cols=63  Identities=19%  Similarity=0.169  Sum_probs=40.9

Q ss_pred             CcEEEEEec-CHhHHHHHHHHHHhCCc---EEEeCCcch--HHhhhh----ccCCC-----cccccccCcEEEEeccc
Q psy13395        153 DLVLAIMGS-GAQAYIHAKAFHASLKL---KKYNRGLTE--GTVTGS----TKKGM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGa-G~QA~~hl~a~~~v~~i---~v~~R~~~~--a~~~a~----~~~g~-----~~~~v~~advvv~~~~~  215 (224)
                      .-+++|+|+ |.+|+.+++++......   -++++++++  .+...+    ...++     ..+.+.++|+||..|..
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~p   82 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRP   82 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCCh
Confidence            468999998 99999999998765443   677887653  222221    11122     23445579999976643

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=88.90  E-value=0.3  Score=42.18  Aligned_cols=64  Identities=17%  Similarity=0.155  Sum_probs=41.9

Q ss_pred             CcEEEEEe-cCHhHHHHHHHHHHhCCc---EEEeCCcch-----HHhhhhccCCC-----cccccccCcEEEEecccc
Q psy13395        153 DLVLAIMG-SGAQAYIHAKAFHASLKL---KKYNRGLTE-----GTVTGSTKKGM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiG-aG~QA~~hl~a~~~v~~i---~v~~R~~~~-----a~~~a~~~~g~-----~~~~v~~advvv~~~~~~  216 (224)
                      .-+|+|+| +|.+|+.+++++...-.+   -+++|+...     +..++....|+     ..+.+.++||||..|..+
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~p~   84 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTLPE   84 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSCHH
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCCHH
Confidence            36899999 899999999998875444   667776532     11222111133     233355899999988643

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=88.83  E-value=0.4  Score=44.05  Aligned_cols=63  Identities=11%  Similarity=0.025  Sum_probs=42.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+.-.+.+...- .+..|+|+++....-+ ....-..+.+.+||+|+.....
T Consensus       155 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~-~~~~sl~ell~~aDvV~lhvPl  218 (416)
T 3k5p_A          155 RGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNV-KPAASLDELLKTSDVVSLHVPS  218 (416)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTB-EECSSHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcccCc-EecCCHHHHHhhCCEEEEeCCC
Confidence            4679999999999999998876542 2488998754321111 1122256677799999987543

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=88.52  E-value=0.32  Score=43.06  Aligned_cols=63  Identities=11%  Similarity=0.102  Sum_probs=43.2

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh--------CCc---EEEeCCcchHHh------hhhcc-CC-----Ccccccc---cCc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS--------LKL---KKYNRGLTEGTV------TGSTK-KG-----MATEDVI---TAK  207 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v--------~~i---~v~~R~~~~a~~------~a~~~-~g-----~~~~~v~---~ad  207 (224)
                      -+++|||+|.+|..|++.+...        ..+   .|++|++++.+.      ++... .+     ...+++.   +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            4799999999999999999886        444   888998766443      32211 01     1233332   589


Q ss_pred             EEEEecccc
Q psy13395        208 LIYDKYQAQ  216 (224)
Q Consensus       208 vvv~~~~~~  216 (224)
                      +||..|...
T Consensus        83 vVv~~tp~~   91 (327)
T 3do5_A           83 VLIEASVTR   91 (327)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCc
Confidence            999999644

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=88.52  E-value=0.5  Score=36.44  Aligned_cols=63  Identities=8%  Similarity=0.009  Sum_probs=41.9

Q ss_pred             CCcEEEEEec----CHhHHHHHHHHHHhCCcEEEeCCcch-HHhhhh-ccCCCccccc-ccCcEEEEecccc
Q psy13395        152 KDLVLAIMGS----GAQAYIHAKAFHASLKLKKYNRGLTE-GTVTGS-TKKGMATEDV-ITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGa----G~QA~~hl~a~~~v~~i~v~~R~~~~-a~~~a~-~~~g~~~~~v-~~advvv~~~~~~  216 (224)
                      ++++++|||+    |..++.+++.+.. ....||.+++.+ .+.... .-.. ..+++ ...|+++..+.++
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~-~G~~v~~vnp~~~~~~i~G~~~~~-sl~el~~~vDlavi~vp~~   81 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLRE-QGYRVLPVNPRFQGEELFGEEAVA-SLLDLKEPVDILDVFRPPS   81 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHH-TTCEEEEECGGGTTSEETTEECBS-SGGGCCSCCSEEEECSCHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHH-CCCEEEEeCCCcccCcCCCEEecC-CHHHCCCCCCEEEEEeCHH
Confidence            4789999999    7899999988665 344799999985 222211 1111 23333 3689998887664

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=88.33  E-value=0.67  Score=40.15  Aligned_cols=65  Identities=12%  Similarity=0.052  Sum_probs=46.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcc-----hHHhhh----------------------h-c------cC
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLT-----EGTVTG----------------------S-T------KK  196 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~-----~a~~~a----------------------~-~------~~  196 (224)
                      ..++++|||.|..|..-++.+...-. +.|++++..     ..+.|+                      . .      ..
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~i~~   91 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEIYEYIRS   91 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTSCCCSEEECS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCCcchhHHHHHHHhccccccccchhhcccccccccccCCeeEEEcC
Confidence            56899999999999999999988765 488877653     223333                      1 0      01


Q ss_pred             CCcccccc------cCcEEEEecccc
Q psy13395        197 GMATEDVI------TAKLIYDKYQAQ  216 (224)
Q Consensus       197 g~~~~~v~------~advvv~~~~~~  216 (224)
                      .+..+++.      ++|+||.+|+..
T Consensus        92 ~~~~~dL~~l~~~~~adlViaat~d~  117 (274)
T 1kyq_A           92 DFKDEYLDLENENDAWYIIMTCIPDH  117 (274)
T ss_dssp             SCCGGGGCCSSTTCCEEEEEECCSCH
T ss_pred             CCCHHHHhhcccCCCeEEEEEcCCCh
Confidence            33566777      999999999864

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=88.15  E-value=0.71  Score=40.86  Aligned_cols=63  Identities=16%  Similarity=-0.010  Sum_probs=40.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+.-.+.+....- +..|+|.+.....-......-..+-+.++|||+...-
T Consensus       140 ~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~P  203 (334)
T 3kb6_A          140 NRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVP  203 (334)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCC
T ss_pred             cCcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCC
Confidence            35799999999999999887665322 3788877543211111111124566779999987654

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=88.02  E-value=0.58  Score=40.47  Aligned_cols=61  Identities=21%  Similarity=0.113  Sum_probs=41.0

Q ss_pred             CCcEEEEEec-CHhHHHHHHHHHHhCCc-EEEeCCcchHHhhhhccCCC-----cccccc--cCcEEEEecccc
Q psy13395        152 KDLVLAIMGS-GAQAYIHAKAFHASLKL-KKYNRGLTEGTVTGSTKKGM-----ATEDVI--TAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGa-G~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~a~~~~g~-----~~~~v~--~advvv~~~~~~  216 (224)
                      +..+++|+|+ |.+++.|++.+... +. .+|..++.++.   ++..|+     ..+...  ..|++|-.+.+.
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~-g~~~V~~V~p~~~g---~~~~G~~vy~sl~el~~~~~~D~viI~tP~~   75 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTPGKGG---TTHLGLPVFNTVREAVAATGATASVIYVPAP   75 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTT---CEETTEEEESSHHHHHHHHCCCEEEECCCGG
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCCccc---ceeCCeeccCCHHHHhhcCCCCEEEEecCHH
Confidence            4689999998 99999999998875 55 55565655431   112332     223333  689999887664

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=87.84  E-value=0.33  Score=41.04  Aligned_cols=63  Identities=16%  Similarity=0.137  Sum_probs=43.1

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCc-------------------chHHhhhhcc----CCC---------
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGL-------------------TEGTVTGSTK----KGM---------  198 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~-------------------~~a~~~a~~~----~g~---------  198 (224)
                      ..+|+|+|+|..|..-++.+...-  .+.|++++.                   .|++.++++.    .++         
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~  107 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRL  107 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence            568999999999999999887753  247775432                   6677766531    121         


Q ss_pred             c----ccccccCcEEEEeccc
Q psy13395        199 A----TEDVITAKLIYDKYQA  215 (224)
Q Consensus       199 ~----~~~v~~advvv~~~~~  215 (224)
                      .    .+.+.++||||.++..
T Consensus       108 ~~~~~~~~~~~~DvVi~~~d~  128 (251)
T 1zud_1          108 TGEALKDAVARADVVLDCTDN  128 (251)
T ss_dssp             CHHHHHHHHHHCSEEEECCSS
T ss_pred             CHHHHHHHHhcCCEEEECCCC
Confidence            1    2235579999998754

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=87.75  E-value=1.2  Score=39.67  Aligned_cols=30  Identities=17%  Similarity=0.156  Sum_probs=23.3

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc---EEEeC
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNR  183 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R  183 (224)
                      .+++|+|+|..|+.++|++...-.+   .|.++
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~   36 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDP   36 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECC
Confidence            4799999999999999998763223   55553

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=87.70  E-value=1.4  Score=40.46  Aligned_cols=65  Identities=15%  Similarity=0.031  Sum_probs=49.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcch-HHhhhhc------cCCCcccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTE-GTVTGST------KKGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~-a~~~a~~------~~g~~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|||.|..|..-++.+...-. +.|++++... .+.+++.      ...+..+++.++|+||.+|+-.
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~~   83 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDD   83 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCCH
Confidence            46789999999999999999988654 4899886533 3444431      1245678899999999999864

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=87.58  E-value=0.94  Score=39.60  Aligned_cols=55  Identities=7%  Similarity=0.067  Sum_probs=40.4

Q ss_pred             CCcEEEEEecCH-hHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGA-QAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~-QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|. .|+.-.+.+...-- +.+.++....           ..+.+++|||||++++..+
T Consensus       160 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~-----------L~~~~~~ADIVI~Avg~p~  216 (285)
T 3l07_A          160 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTD-----------LKSHTTKADILIVAVGKPN  216 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS-----------HHHHHTTCSEEEECCCCTT
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchh-----------HHHhcccCCEEEECCCCCC
Confidence            678999999887 68888777766432 3666654221           3467889999999998754

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=87.49  E-value=0.88  Score=39.79  Aligned_cols=55  Identities=11%  Similarity=-0.023  Sum_probs=40.5

Q ss_pred             CCcEEEEEecCH-hHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGA-QAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~-QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|. .|+...+.+...-- +.+.+++.+.           ..+.+++|||||++++..+
T Consensus       159 ~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~-----------L~~~~~~ADIVI~Avg~p~  215 (285)
T 3p2o_A          159 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKD-----------LSLYTRQADLIIVAAGCVN  215 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSC-----------HHHHHTTCSEEEECSSCTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchh-----------HHHHhhcCCEEEECCCCCC
Confidence            689999999887 68887777766432 3666654322           3467889999999998754

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=87.43  E-value=0.41  Score=43.41  Aligned_cols=61  Identities=8%  Similarity=0.002  Sum_probs=42.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|+...+.+.. +.  +.+|+|+++..+ .. ....-..+.+.++|||+..+..
T Consensus       115 ~g~tvGIIGlG~IG~~vA~~l~~-~G~~V~~~d~~~~~~~-~g-~~~~~l~ell~~aDvV~l~~Pl  177 (380)
T 2o4c_A          115 AERTYGVVGAGQVGGRLVEVLRG-LGWKVLVCDPPRQARE-PD-GEFVSLERLLAEADVISLHTPL  177 (380)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHH-TTCEEEEECHHHHHHS-TT-SCCCCHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHH-CCCEEEEEcCChhhhc-cC-cccCCHHHHHHhCCEEEEeccC
Confidence            57799999999999999998875 44  388887765331 11 1111134556799999998654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=87.37  E-value=0.76  Score=36.79  Aligned_cols=62  Identities=15%  Similarity=0.165  Sum_probs=44.1

Q ss_pred             CcEEEEEe-cCHhHHHHHHHHHHhCC--cEEEeCCcc-hHHhhhhcc-------CCC-----cccccccCcEEEEecc
Q psy13395        153 DLVLAIMG-SGAQAYIHAKAFHASLK--LKKYNRGLT-EGTVTGSTK-------KGM-----ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiG-aG~QA~~hl~a~~~v~~--i~v~~R~~~-~a~~~a~~~-------~g~-----~~~~v~~advvv~~~~  214 (224)
                      .++++|+| +|.+|+..++.|..-..  +.+.+|+++ +++.++...       ..+     ..+.+.+.|+||...+
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag   82 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAM   82 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCC
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCC
Confidence            35699999 69999999999983344  488899998 877764211       122     2345568899997765

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=87.22  E-value=0.58  Score=42.62  Aligned_cols=63  Identities=10%  Similarity=-0.046  Sum_probs=43.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|.+|..-.+.+...- .+.+|+|+++....-+ ....-..+.+.++|+|+.....
T Consensus       144 ~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~-~~~~~l~ell~~aDvV~l~~P~  207 (404)
T 1sc6_A          144 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNA-TQVQHLSDLLNMSDVVSLHVPE  207 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTC-EECSCHHHHHHHCSEEEECCCS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhccCCc-eecCCHHHHHhcCCEEEEccCC
Confidence            5779999999999999999877532 2488998765421101 1111245667799999987654

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=86.95  E-value=0.81  Score=39.95  Aligned_cols=62  Identities=10%  Similarity=-0.009  Sum_probs=42.4

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhh----hc--cCC--------CcccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTG----ST--KKG--------MATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a----~~--~~g--------~~~~~v~~advvv~~~~~~  216 (224)
                      .++|||+|..|......+..---   +.+++.++++++.-+    +.  ..+        -..+++.+|||||-+-+..
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p   80 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence            58999999999877666554322   389999886654332    21  111        1578999999999877643

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=86.82  E-value=0.95  Score=41.82  Aligned_cols=64  Identities=11%  Similarity=0.114  Sum_probs=44.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh---------CCc---EEEeCCcchHHhhhhccCC-Cccccc---ccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS---------LKL---KKYNRGLTEGTVTGSTKKG-MATEDV---ITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v---------~~i---~v~~R~~~~a~~~a~~~~g-~~~~~v---~~advvv~~~~~  215 (224)
                      +.-+++|||+|.+|..+++.+..-         .++   .|++|++++++.++....- -..+++   .+.|+||..|..
T Consensus         9 k~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp~   88 (444)
T 3mtj_A            9 KPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIGG   88 (444)
T ss_dssp             SCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCCS
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCCC
Confidence            457899999999999999887641         233   8999999998887542110 022233   256999998874

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=86.68  E-value=0.37  Score=40.26  Aligned_cols=64  Identities=8%  Similarity=0.011  Sum_probs=39.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHH-HHh--CCc-EEEeCCcchHHhhhhccC--CC--cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAF-HAS--LKL-KKYNRGLTEGTVTGSTKK--GM--ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~-~~v--~~i-~v~~R~~~~a~~~a~~~~--g~--~~~~v~~advvv~~~~~  215 (224)
                      +..+++|||+|..|+.|++.+ ...  +.+ -+++++++++...+....  +.  ..+-+.+.|+|+-++..
T Consensus        84 ~~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs  155 (215)
T 2vt3_A           84 EMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA  155 (215)
T ss_dssp             ---CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence            567899999999999999952 222  223 899999998776554211  11  22333333988888754

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=86.20  E-value=0.74  Score=39.47  Aligned_cols=61  Identities=13%  Similarity=0.167  Sum_probs=39.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh--C-C--c-EEEeCCcchHHhhhhccCCCccccc-c--cCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS--L-K--L-KKYNRGLTEGTVTGSTKKGMATEDV-I--TAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v--~-~--i-~v~~R~~~~a~~~a~~~~g~~~~~v-~--~advvv~~~~~  215 (224)
                      +..+++|||+|.+|..|++++...  . .  + -|++|+.. ++.+.-. .. ..+++ .  +.|+|+.+|..
T Consensus         6 ~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-a~~~g~~-~~-~~~ell~~~~vD~V~i~tp~   75 (294)
T 1lc0_A            6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-GSLDEVR-QI-SLEDALRSQEIDVAYICSES   75 (294)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-CEETTEE-BC-CHHHHHHCSSEEEEEECSCG
T ss_pred             CcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH-HHHcCCC-CC-CHHHHhcCCCCCEEEEeCCc
Confidence            567999999999999999998763  2 2  2 68888642 1111101 11 23333 2  57999998864

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=85.70  E-value=1  Score=39.60  Aligned_cols=57  Identities=9%  Similarity=0.046  Sum_probs=41.1

Q ss_pred             CCcEEEEEecCH-hHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGA-QAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~-QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      .-++++|||.|. .|+.-.+.+...-- +.+.+|.....+         ..+.+++|||||++++..+
T Consensus       164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~---------l~~~~~~ADIVI~Avg~p~  222 (300)
T 4a26_A          164 AGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTED---------MIDYLRTADIVIAAMGQPG  222 (300)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHH---------HHHHHHTCSEEEECSCCTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCch---------hhhhhccCCEEEECCCCCC
Confidence            688999999877 78888877776532 377776332221         1267889999999998753

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=85.63  E-value=0.98  Score=39.42  Aligned_cols=64  Identities=14%  Similarity=0.113  Sum_probs=42.4

Q ss_pred             CCcEEEEEe-cCHhHHHHHHHHHHhCCc---EEEeCCcch-----HHhhhh-ccCCC-----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMG-SGAQAYIHAKAFHASLKL---KKYNRGLTE-----GTVTGS-TKKGM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiG-aG~QA~~hl~a~~~v~~i---~v~~R~~~~-----a~~~a~-~~~g~-----~~~~v~~advvv~~~~~  215 (224)
                      ...+|+|+| +|.+|+.+++++..--.+   -+++|+...     +..++. ...|+     ..+.+.++||||..|..
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~p   98 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQP   98 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSCH
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCCH
Confidence            467999999 999999999998875443   677776432     222322 12243     23345689999988754

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=85.52  E-value=0.83  Score=42.32  Aligned_cols=63  Identities=11%  Similarity=0.141  Sum_probs=43.3

Q ss_pred             CcEEEEEecCHh--HHHHHHHHHHhC----CcEEEeCCcchHHhhhh---ccCCC---------cccccccCcEEEEecc
Q psy13395        153 DLVLAIMGSGAQ--AYIHAKAFHASL----KLKKYNRGLTEGTVTGS---TKKGM---------ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiGaG~Q--A~~hl~a~~~v~----~i~v~~R~~~~a~~~a~---~~~g~---------~~~~v~~advvv~~~~  214 (224)
                      ..+++|||+|..  +...+..++...    .+.+|++++++++....   .....         ..+++.+||+||.+-+
T Consensus         5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~air   84 (450)
T 3fef_A            5 QIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISIL   84 (450)
T ss_dssp             CEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEeccc
Confidence            358999999996  456666665422    34999999987655432   11001         3578999999999986


Q ss_pred             c
Q psy13395        215 A  215 (224)
Q Consensus       215 ~  215 (224)
                      .
T Consensus        85 v   85 (450)
T 3fef_A           85 P   85 (450)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=85.34  E-value=1.9  Score=38.04  Aligned_cols=34  Identities=15%  Similarity=0.248  Sum_probs=27.8

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh------CCc---EEEeCCcc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS------LKL---KKYNRGLT  186 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v------~~i---~v~~R~~~  186 (224)
                      .-+++|+|+|.+|..+++.+...      .++   -|++++.+
T Consensus         4 ~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~   46 (325)
T 3ing_A            4 EIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSY   46 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBE
T ss_pred             eEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChh
Confidence            46899999999999999999884      233   78888765

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=85.00  E-value=3.5  Score=33.15  Aligned_cols=64  Identities=8%  Similarity=0.060  Sum_probs=47.2

Q ss_pred             CCcEEEEEec-CHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC------CC---cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGS-GAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK------GM---ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGa-G~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~------g~---~~~~v~~advvv~~~~~  215 (224)
                      ..++++|+|+ |.+|+..++.|+..- .+.+.+|++++.+.+.+...      .+   ..+++.+.|+||...+.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGS   94 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence            4678999997 999999999998752 24888999998877654211      12   35566788999987654

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=84.65  E-value=1.4  Score=39.24  Aligned_cols=64  Identities=19%  Similarity=0.091  Sum_probs=44.8

Q ss_pred             CCcEEEEEec-CHhHHHHHHHHHHhC---CcEEEeCCcchHHh----hhhcc-C--CC-----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGS-GAQAYIHAKAFHASL---KLKKYNRGLTEGTV----TGSTK-K--GM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGa-G~QA~~hl~a~~~v~---~i~v~~R~~~~a~~----~a~~~-~--g~-----~~~~v~~advvv~~~~~  215 (224)
                      ...+++|||+ |..|...+..+...-   .+.++++++++++.    |.+.. .  .+     ..+++.+|||||.+-+.
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG~   86 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGGA   86 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC-
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccCC
Confidence            4568999997 999999987766543   24999999887665    33311 1  11     24678999999987553

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=84.28  E-value=0.94  Score=44.51  Aligned_cols=61  Identities=11%  Similarity=0.132  Sum_probs=41.8

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhh-----------c-----cC---C-----CcccccccCc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGS-----------T-----KK---G-----MATEDVITAK  207 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~-----------~-----~~---g-----~~~~~v~~ad  207 (224)
                      -++++|||+|.+|.--...+... +++.+|+++++..++-.+           +     ..   .     ...+++.++|
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD  395 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVD  395 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGSCS
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhhCC
Confidence            57999999999998776665543 234999999876432211           0     00   0     1577899999


Q ss_pred             EEEEec
Q psy13395        208 LIYDKY  213 (224)
Q Consensus       208 vvv~~~  213 (224)
                      +||.+-
T Consensus       396 lVIEAV  401 (742)
T 3zwc_A          396 LVVEAV  401 (742)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            999874

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=83.58  E-value=2.6  Score=37.11  Aligned_cols=55  Identities=5%  Similarity=-0.015  Sum_probs=40.7

Q ss_pred             CCcEEEEEecCH-hHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGA-QAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~-QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|. .|+--.+.+....- +.+.++..+.           ..+.+++|||||++++..+
T Consensus       164 ~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~-----------L~~~~~~ADIVI~Avg~p~  220 (301)
T 1a4i_A          164 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAH-----------LDEEVNKGDILVVATGQPE  220 (301)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS-----------HHHHHTTCSEEEECCCCTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCccc-----------HHHHhccCCEEEECCCCcc
Confidence            689999999995 68887777766443 3666544221           4567889999999998764

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=82.82  E-value=1.5  Score=38.35  Aligned_cols=64  Identities=9%  Similarity=-0.041  Sum_probs=43.9

Q ss_pred             CCcEEEEEec-CHhHHHHHHHHHHhC--------CcEEEeCC----cchHHh----hhhccCCC---------ccccccc
Q psy13395        152 KDLVLAIMGS-GAQAYIHAKAFHASL--------KLKKYNRG----LTEGTV----TGSTKKGM---------ATEDVIT  205 (224)
Q Consensus       152 ~~~~l~iiGa-G~QA~~hl~a~~~v~--------~i~v~~R~----~~~a~~----~a~~~~g~---------~~~~v~~  205 (224)
                      ++.+++|+|+ |..+...+..+..-.        .+.+++++    .++++.    |.+....+         ..+++.+
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~   83 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKD   83 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCC
Confidence            4678999997 999999888776532        24888888    544433    33311111         3677899


Q ss_pred             CcEEEEeccc
Q psy13395        206 AKLIYDKYQA  215 (224)
Q Consensus       206 advvv~~~~~  215 (224)
                      ||+||..-+.
T Consensus        84 aD~Vi~~ag~   93 (329)
T 1b8p_A           84 ADVALLVGAR   93 (329)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEEeCCC
Confidence            9999987664

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=82.64  E-value=2.1  Score=37.83  Aligned_cols=63  Identities=17%  Similarity=0.145  Sum_probs=38.9

Q ss_pred             CcEEEEEe-cCHhHHHHHHHHHHhCC-c--EEEeCCcchHHhhhhc---cCC-----C-cccccccCcEEEEecccc
Q psy13395        153 DLVLAIMG-SGAQAYIHAKAFHASLK-L--KKYNRGLTEGTVTGST---KKG-----M-ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiG-aG~QA~~hl~a~~~v~~-i--~v~~R~~~~a~~~a~~---~~g-----~-~~~~v~~advvv~~~~~~  216 (224)
                      ..+++|+| +|..|+.+++.+.. +| +  ...++.....+.+.+.   ..|     + ..+++.++|+|+.+++..
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~-~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~vDvV~~a~g~~   79 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALS-HPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEKLEPADILVLALPHG   79 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHT-CTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGGCCCCSEEEECCCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHc-CCCcEEEEEECchhhCchhHHhCchhcCcccccccchhHhcCCCEEEEcCCcH
Confidence            35899999 79999999999875 45 3  2223333233333321   111     1 112456899999999864

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=82.64  E-value=1.3  Score=38.27  Aligned_cols=60  Identities=8%  Similarity=0.018  Sum_probs=42.2

Q ss_pred             EEEEEe-cCHhHHHHHHHHHHhCC---cEEEeC--CcchHHhhh----hccC---------CCcccccccCcEEEEeccc
Q psy13395        155 VLAIMG-SGAQAYIHAKAFHASLK---LKKYNR--GLTEGTVTG----STKK---------GMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiG-aG~QA~~hl~a~~~v~~---i~v~~R--~~~~a~~~a----~~~~---------g~~~~~v~~advvv~~~~~  215 (224)
                      +++|+| +|..+...+..+..-..   +.++++  ++++++..+    +...         + ..+++.++|+||...+.
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~-~~~a~~~aDvVi~~ag~   80 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG-GYEDTAGSDVVVITAGI   80 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEEC-CGGGGTTCSEEEECCCC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeC-CHHHhCCCCEEEEcCCC
Confidence            689999 99999998887765322   377888  766554322    2110         2 47789999999998764

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=81.81  E-value=2.6  Score=36.82  Aligned_cols=55  Identities=11%  Similarity=-0.031  Sum_probs=40.5

Q ss_pred             CCcEEEEEecCH-hHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGA-QAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~-QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|. .|+--.+.+....- +.+.++..+.           ..+.+++|||||++++..+
T Consensus       158 ~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~-----------L~~~~~~ADIVI~Avg~p~  214 (288)
T 1b0a_A          158 FGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKN-----------LRHHVENADLLIVAVGKPG  214 (288)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSC-----------HHHHHHHCSEEEECSCCTT
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchh-----------HHHHhccCCEEEECCCCcC
Confidence            689999999996 68887777766433 3666544321           4567789999999999765

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=81.50  E-value=2.3  Score=37.63  Aligned_cols=63  Identities=13%  Similarity=0.127  Sum_probs=39.2

Q ss_pred             CcEEEEEe-cCHhHHHHHHHHHHhCC-c---EEEeCCcchHHhhhhc-----------------cCCCcccccccCcEEE
Q psy13395        153 DLVLAIMG-SGAQAYIHAKAFHASLK-L---KKYNRGLTEGTVTGST-----------------KKGMATEDVITAKLIY  210 (224)
Q Consensus       153 ~~~l~iiG-aG~QA~~hl~a~~~v~~-i---~v~~R~~~~a~~~a~~-----------------~~g~~~~~v~~advvv  210 (224)
                      ..+++|+| +|..|+.+++.+.. +| +   .+.+......+.+.+.                 ......+++.+.|+|+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~-~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~vDvVf   82 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAK-HPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYEDHKDVDVVL   82 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTT-CSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGGGTTCSEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHh-CCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHHhcCCCEEE
Confidence            46899999 89999999998765 45 3   4442222222223210                 1122345567899999


Q ss_pred             Eecccc
Q psy13395        211 DKYQAQ  216 (224)
Q Consensus       211 ~~~~~~  216 (224)
                      .+|+..
T Consensus        83 ~atp~~   88 (350)
T 2ep5_A           83 SALPNE   88 (350)
T ss_dssp             ECCCHH
T ss_pred             ECCChH
Confidence            999753

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=81.38  E-value=2.1  Score=37.39  Aligned_cols=55  Identities=11%  Similarity=-0.000  Sum_probs=39.1

Q ss_pred             CCcEEEEEecCH-hHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGA-QAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~-QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|. .|+.-.+.+...-- +.+.++....           ..+.+++|||||++++..+
T Consensus       160 ~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~-----------L~~~~~~ADIVI~Avg~p~  216 (286)
T 4a5o_A          160 YGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRD-----------LADHVSRADLVVVAAGKPG  216 (286)
T ss_dssp             TTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSC-----------HHHHHHTCSEEEECCCCTT
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcC-----------HHHHhccCCEEEECCCCCC
Confidence            688999999876 78887777766432 3555543211           3467889999999998754

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=81.36  E-value=2  Score=38.22  Aligned_cols=62  Identities=13%  Similarity=0.165  Sum_probs=38.9

Q ss_pred             CcEEEEEe-cCHhHHHHHHHHHHhCC-c---EEEeCCcchHHhhhhc---cCC-----C--c-ccccccCcEEEEecccc
Q psy13395        153 DLVLAIMG-SGAQAYIHAKAFHASLK-L---KKYNRGLTEGTVTGST---KKG-----M--A-TEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiG-aG~QA~~hl~a~~~v~~-i---~v~~R~~~~a~~~a~~---~~g-----~--~-~~~v~~advvv~~~~~~  216 (224)
                      ..+++|+| +|..|+.+++.+.. +| +   .+.++ .+..+.+.+.   ..+     +  . .+...+.|+|+.+|+..
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~-~p~~elvai~~~-~~~g~~~~~~~~~~~~~v~~dl~~~~~~~~~~vDvVf~atp~~   93 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLAN-HPHFQVTLMTAD-RKAGQSMESVFPHLRAQKLPTLVSVKDADFSTVDAVFCCLPHG   93 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHT-CSSEEEEEEBCS-TTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCCTT
T ss_pred             CcEEEEECcCCHHHHHHHHHHHc-CCCcEEEEEeCc-hhcCCCHHHhCchhcCcccccceecchhHhcCCCEEEEcCCch
Confidence            46899999 89999999999876 45 3   44444 2222333321   111     1  1 23345799999999654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=81.17  E-value=3.8  Score=32.14  Aligned_cols=61  Identities=16%  Similarity=0.205  Sum_probs=44.3

Q ss_pred             EEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc----cCCC---cccccccCcEEEEeccc
Q psy13395        155 VLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST----KKGM---ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~----~~g~---~~~~v~~advvv~~~~~  215 (224)
                      +++|+| +|.+|+.-++.+...- .+.+.+|++++.+.+...    ...+   ..+++.+.|+||...+.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            589999 5999999999988753 348899999888776421    0111   12677789999987655

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=80.80  E-value=1.5  Score=37.69  Aligned_cols=53  Identities=8%  Similarity=0.027  Sum_probs=35.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhhhhccCCC-----cccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~  214 (224)
                      .-.+|+++|+|.+|+.-+++ . -+.+ .+|+   +++.++     |+     ..+-+..+|+||.+.+
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~-~-~leLv~v~~---~k~gel-----gv~a~~d~d~lla~pD~VVe~A~   69 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL-G-NFEKIYAYD---RISKDI-----PGVVRLDEFQVPSDVSTVVECAS   69 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH-S-CCSEEEEEC---SSCCCC-----SSSEECSSCCCCTTCCEEEECSC
T ss_pred             ccceEEEECcCHHHHHHHhc-C-CcEEEEEEe---cccccc-----CceeeCCHHHHhhCCCEEEECCC
Confidence            56799999999999999998 3 3444 8887   555544     22     1222246788877654

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=80.24  E-value=2.9  Score=38.59  Aligned_cols=62  Identities=18%  Similarity=0.212  Sum_probs=46.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc-----------------CCC------cccccccCc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK-----------------KGM------ATEDVITAK  207 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~-----------------~g~------~~~~v~~ad  207 (224)
                      .-.+++|||+|-+|.-+...|... +++..++.++++.+.+.+..                 .|-      ..+++..+|
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            456899999999999999998876 44688999999887775421                 121      246688999


Q ss_pred             EEEEec
Q psy13395        208 LIYDKY  213 (224)
Q Consensus       208 vvv~~~  213 (224)
                      ++|-+-
T Consensus       100 ~~~I~V  105 (444)
T 3vtf_A          100 ATFIAV  105 (444)
T ss_dssp             EEEECC
T ss_pred             ceEEEe
Confidence            988663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d1x7da_	340	c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomona	2e-31
d1omoa_	320	c.2.1.13 (A:) Archaeal alanine dehydrogenase {Arch	3e-29

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} Length = 340

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

 Score =  115 bits (288), Expect = 2e-31
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query: 20  LFLSDEQVRDLLD-------WESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSM 72
            F+    + DL+           L  A+     +    +  + AR+        GV+  M
Sbjct: 2   YFIDVPTMSDLVHDIGVAPFIGELAAALRDDFKRWQAFD--KSARVASHSE--VGVIELM 57

Query: 73  PGYIKRTGPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKW 132
           P          +   A K V     N  + L +V+A  +L + D+G   ++ E T  T  
Sbjct: 58  PVA-------DKSRYAFKYVNGHPANTARNLHTVMAFGVLADVDSGYPVLLSELTIATAL 110

Query: 133 RTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKY 181
           RTAA S++A + L   +      +A++G+GAQ+   A AFH  L +++ 
Sbjct: 111 RTAATSLMAAQAL---ARPNARKMALIGNGAQSEFQALAFHKHLGIEEI 156

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 320

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  109 bits (273), Expect = 3e-29
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 12/164 (7%)

Query: 20  LFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRT 79
           L L+ E+V  L+  +  + A+E      +  +   P ++++      G L +MP ++   
Sbjct: 4   LILTQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVYLEFE--KGDLRAMPAHL--- 58

Query: 80  GPDGEDSLAIKVVTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASV 139
                    +K V S   N  KGLP+V+A ++L + + G    VM+ T  T  RT AA  
Sbjct: 59  ----MGYAGLKWVNSHPGNPDKGLPTVMALMILNSPETGFPLAVMDATYTTSLRTGAAGG 114

Query: 140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLKLKKYNR 183
           +A K+L  +      V   +G G QAY   +A      + +   
Sbjct: 115 IAAKYLARK---NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKA 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	100.0
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	100.0
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.64
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.1
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.94
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.59
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.52
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.47
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.46
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.46
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.43
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.4
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.37
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.33
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.23
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.16
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.13
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	97.04
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.0
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.82
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.68
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.68
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.58
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.41
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.38
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.35
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.33
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.31
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.24
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.24
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.24
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.23
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.22
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.03
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.0
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.92
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.83
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.82
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.82
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.81
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.75
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.63
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.59
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.56
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.51
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.43
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.4
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.35
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.08
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.04
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	94.92
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.9
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.61
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.47
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.46
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.29
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.23
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.06
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.05
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	93.69
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	93.36
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	93.28
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	93.14
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	92.7
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.39
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	92.22
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	92.19
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	92.13
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.07
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	91.83
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	91.78
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	91.62
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.46
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	91.35
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.34
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.76
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.64
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.31
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	90.18
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	90.14
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	90.07
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	89.95
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	89.92
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	89.44
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	89.42
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	89.01
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	88.35
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	87.83
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	87.81
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.7
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	87.41
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.22
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	87.01
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	84.68
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	84.3
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	84.06
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	83.84
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	83.71
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	82.87
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	82.55
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	82.47
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	80.85
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	80.6
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	80.45
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	80.37

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.7e-48  Score=346.93  Aligned_cols=187  Identities=25%  Similarity=0.388  Sum_probs=176.4

Q ss_pred             CCeeeCHHHHHhcCChhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEEEeecCC
Q psy13395         18 PPLFLSDEQVRDLLDWESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKVVTSFTD   97 (224)
Q Consensus        18 ~~~~Ls~~dV~~ll~~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~vs~~p~   97 (224)
                      +++|||++||+++|+++++|+++|++|..+++|++.+|+|..+..+  ++++++||++.++       ++|+||++.||+
T Consensus         2 ~tliLs~~dv~~~l~~~~~i~a~~~af~~~~~g~~~~p~r~~~~~~--~~~~~~mpa~~~~-------~~g~K~v~~~p~   72 (320)
T d1omoa_           2 ETLILTQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVYLEFE--KGDLRAMPAHLMG-------YAGLKWVNSHPG   72 (320)
T ss_dssp             CEEEECHHHHHTSCCHHHHHHHHHHHHHHHHTTCSBCCCCEEEECS--SCEEEEEEEEETT-------EEEEEEEEECTT
T ss_pred             ceEEECHHHHHHhCCHHHHHHHHHHHHHHHhcCCccCCCEEEEecC--CCcEEEEEEEeCC-------CceEEEEEeccc
Confidence            5789999999999999999999999999999999999999999874  7889999999875       899999999999


Q ss_pred             CCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC
Q psy13395         98 NKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK  177 (224)
Q Consensus        98 N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~  177 (224)
                      |+.+|+|+++++++|||++||+|+|+|||++||+|||||+|++++|||+|+   ++++|+|||+|.||++|++++..+||
T Consensus        73 N~~~glp~~~g~i~L~d~~TG~p~Aild~~~lT~~RTaA~sala~~~la~~---~~~~l~iiGaG~QA~~~~~al~~~~~  149 (320)
T d1omoa_          73 NPDKGLPTVMALMILNSPETGFPLAVMDATYTTSLRTGAAGGIAAKYLARK---NSSVFGFIGCGTQAYFQLEALRRVFD  149 (320)
T ss_dssp             TGGGTSCSCCEEEEEECTTTCCEEEEEECHHHHHHHHHHHHHHHHHHHSCT---TCCEEEEECCSHHHHHHHHHHHHHSC
T ss_pred             ccccCcceEEEEEEEEecCCCcEEEEecccccccccchhHHHHHHHHhccC---CccEEEEecCcccHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999   99999999999999999999999999


Q ss_pred             c---EEEeCCcchHHhhhhcc--CCC-----cccccccCcEEEEecccc
Q psy13395        178 L---KKYNRGLTEGTVTGSTK--KGM-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       178 i---~v~~R~~~~a~~~a~~~--~g~-----~~~~v~~advvv~~~~~~  216 (224)
                      +   +||||+++++++|+++.  .++     ..+++.+||||+|+|.+.
T Consensus       150 i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~  198 (320)
T d1omoa_         150 IGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSR  198 (320)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCS
T ss_pred             hhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCc
Confidence            7   99999999999999842  233     678899999999999864

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=2.8e-43  Score=317.12  Aligned_cols=182  Identities=26%  Similarity=0.284  Sum_probs=166.6

Q ss_pred             CeeeCHHHHHhcCC-------hhHHHHHHHHHHHhhhcCCccCCceeEeeecCCCcEEEEeceeecCCCCCCCCeEEEEE
Q psy13395         19 PLFLSDEQVRDLLD-------WESLVPAIESVMVKVSKKEVIQPARLFMRIPEVNGVLLSMPGYIKRTGPDGEDSLAIKV   91 (224)
Q Consensus        19 ~~~Ls~~dV~~ll~-------~~~~i~ale~af~~~~~g~~~~P~R~~~~~~~~~g~~~~Mpa~~~~~~~~~~~~~GvK~   91 (224)
                      .+||+.+++.+++.       ++++++.+|+.|+.+..  ...|+|...+.  ++|.+.+||++.++       ++|+||
T Consensus         1 t~~~~~~~~~~l~~~~g~~~~~~~l~~~le~~f~~~~~--~~~~pr~~~h~--~~G~~~~MP~~~~~-------~~g~K~   69 (340)
T d1x7da_           1 TYFIDVPTMSDLVHDIGVAPFIGELAAALRDDFKRWQA--FDKSARVASHS--EVGVIELMPVADKS-------RYAFKY   69 (340)
T ss_dssp             CEEECHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTGGG--SBCCCCEEEEC--SSCEEEEEEEECSS-------EEEEEE
T ss_pred             CceEcHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccc--cCCCCcccccC--CCCeEEEeeccCCC-------eEEEEE
Confidence            47999999999987       68999999999998865  44788987774  58999999998654       899999


Q ss_pred             EeecCCCCCCCCCceEEEEEEEeCCCCcEEEEEeCccchhhhhhhhhHHhhhhhccCCCCCCcEEEEEecCHhHHHHHHH
Q psy13395         92 VTSFTDNKVKGLPSVLATVLLYNTDNGKLKVVMEGTEITKWRTAAASVVATKHLFGRSGDKDLVLAIMGSGAQAYIHAKA  171 (224)
Q Consensus        92 vs~~p~N~~~glP~~~g~i~L~D~~TG~p~AllDg~~lT~~RTaA~Salaa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a  171 (224)
                      +++||+|+.+|||+++|+++|||.+||+|+|+||+++||++||||+|++|+|||||+   ++++|+|||+|.||++|+++
T Consensus        70 v~~~p~N~~~Glp~i~g~~~L~d~~TG~p~al~d~~~LTa~RTaA~salaa~~LA~~---da~~l~iiG~G~QA~~~~~a  146 (340)
T d1x7da_          70 VNGHPANTARNLHTVMAFGVLADVDSGYPVLLSELTIATALRTAATSLMAAQALARP---NARKMALIGNGAQSEFQALA  146 (340)
T ss_dssp             EEECGGGGGGTCCSEEEEEEEEETTTCCEEEEEECHHHHHHHHHHHHHHHHHHHSCT---TCCEEEEECCSTTHHHHHHH
T ss_pred             EEECCCccccCCCcceEEEEEEECCCCCEEEEEcchhhhhhHHHHHHHHHHHHhhcc---CCceEEEEcccHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999   99999999999999999999


Q ss_pred             HHHhCCc---EEEeCCcchHHhhhhcc---CCC-------cccccccCcEEEEecc
Q psy13395        172 FHASLKL---KKYNRGLTEGTVTGSTK---KGM-------ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       172 ~~~v~~i---~v~~R~~~~a~~~a~~~---~g~-------~~~~v~~advvv~~~~  214 (224)
                      +.++|+|   +||+|+++++++|+++.   .|+       ..+++.+||||++.|.
T Consensus       147 ~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta  202 (340)
T d1x7da_         147 FHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA  202 (340)
T ss_dssp             HHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC
T ss_pred             HhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc
Confidence            9999997   99999999999999742   354       5788999999999884

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.64  E-value=2.2e-08  Score=78.98  Aligned_cols=75  Identities=15%  Similarity=0.156  Sum_probs=61.3

Q ss_pred             HhhhhhccCCCCCCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccC----CC--cccccccCcEEEE
Q psy13395        140 VATKHLFGRSGDKDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKK----GM--ATEDVITAKLIYD  211 (224)
Q Consensus       140 laa~~Lar~~~~~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~----g~--~~~~v~~advvv~  211 (224)
                      ++.+.+..-   +.++++|||+|.+|+..++.|...-.  +.||||+.+++++|+....    .+  ..+.+.++||||+
T Consensus        14 la~~~~~~l---~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~   90 (159)
T d1gpja2          14 LAERELGSL---HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVS   90 (159)
T ss_dssp             HHHHHHSCC---TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEE
T ss_pred             HHHHHhCCc---ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEE
Confidence            455666656   89999999999999999999888642  4999999999999998532    12  4678889999999


Q ss_pred             eccccc
Q psy13395        212 KYQAQH  217 (224)
Q Consensus       212 ~~~~~~  217 (224)
                      +|++.+
T Consensus        91 atss~~   96 (159)
T d1gpja2          91 ATAAPH   96 (159)
T ss_dssp             CCSSSS
T ss_pred             ecCCCC
Confidence            999875

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=5.6e-07  Score=68.91  Aligned_cols=60  Identities=7%  Similarity=0.124  Sum_probs=44.8

Q ss_pred             EEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhhhhccC---CCcccccccCcEEEEeccc
Q psy13395        156 LAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       156 l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~~~  215 (224)
                      +++||+|.+|+.-++.|..-+++ .||||+++++++|+++..   .-..+.+.++|||+.+...
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d   65 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPD   65 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccc
Confidence            68999999999999988777776 899999999999998533   2256778899999998764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.94  E-value=7.5e-06  Score=62.82  Aligned_cols=62  Identities=15%  Similarity=0.139  Sum_probs=51.8

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      ++++||+|.+|...++.+...-+  +.+|+|+++++++|+++. |+    ..+++.++|+||-+...|+
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~-~~~~~~~~~~v~~~Div~lavkP~~   69 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL-GVETSATLPELHSDDVLILAVKPQD   69 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT-CCEEESSCCCCCTTSEEEECSCHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc-ccccccccccccccceEEEecCHHH
Confidence            68999999999999999887753  499999999999998753 43    4677889999999987653

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.59  E-value=2.9e-05  Score=59.05  Aligned_cols=63  Identities=14%  Similarity=0.114  Sum_probs=50.0

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC-------CC-----cccccccCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK-------GM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~-------g~-----~~~~v~~advvv~~~~~  215 (224)
                      .++++|||+|.+|+..++.|...- .+.||||+.++++.|++...       +.     ..+.+..+|+++..+-.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~   77 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPY   77 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccc
Confidence            578999999999999999887652 35999999999999998432       11     35567788999887754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.52  E-value=3.1e-05  Score=60.74  Aligned_cols=65  Identities=17%  Similarity=0.135  Sum_probs=52.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhcc----C---------CCcccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTK----K---------GMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~----~---------g~~~~~v~~advvv~~~~~~  216 (224)
                      ..++++|||+|..|++-+.++.....|+|+||++++++.|++..    .         .-......++|+||.+|...
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g   94 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIG   94 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSSEEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHccccceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCccc
Confidence            67899999999999999999877666799999999999988621    0         11355677899999999764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.47  E-value=6e-05  Score=57.83  Aligned_cols=62  Identities=15%  Similarity=0.138  Sum_probs=49.8

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccCCC-----cccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKKGM-----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~g~-----~~~~v~~advvv~~~~~~~  217 (224)
                      ++++||+|.+|...++.+..--. +.+|+|++++.+.++++. |+     ..+.+.++|||+.+...|+
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~-g~~~~~~~~~~~~~~dvIilavkp~~   69 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-ALPYAMSHQDLIDQVDLVILGIKPQL   69 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-TCCBCSSHHHHHHTCSEEEECSCGGG
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc-ceeeechhhhhhhccceeeeecchHh
Confidence            58999999999999998876432 499999999999887642 22     4566789999999987664

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.46  E-value=5.9e-05  Score=58.79  Aligned_cols=64  Identities=23%  Similarity=0.261  Sum_probs=50.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC--CcEEEeCCcchHHhhhhccCC--CcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL--KLKKYNRGLTEGTVTGSTKKG--MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~--~i~v~~R~~~~a~~~a~~~~g--~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||+|..|++-+.++...-  .|.|+||++++++.|++....  +......++||||.+|..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCTTCCCSEEEECSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcccccchhhheecccc
Confidence            4578999999999999999988764  259999999999999874321  122334689999999875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.46  E-value=6.4e-05  Score=58.96  Aligned_cols=66  Identities=12%  Similarity=0.107  Sum_probs=51.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccC---CC-----cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKK---GM-----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~---g~-----~~~~v~~advvv~~~~~~~  217 (224)
                      +.++++|+|+|..|++-+.++..... +.|+||+.++++.+++...   .+     ......++||||.+|....
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~   91 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGL   91 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeecccccc
Confidence            57899999999999999999876332 4999999999999988432   11     2334679999999998654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.00013  Score=56.67  Aligned_cols=66  Identities=12%  Similarity=0.048  Sum_probs=51.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccC--------CCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKK--------GMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~--------g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|+|+|.-|++-+.++...-. |.|+||++++++.+++...        .........+||||.+|..-.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~   91 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGI   91 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGG
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCc
Confidence            56899999999999999999887643 4999999999999887321        123334567999999997654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.40  E-value=6.5e-05  Score=57.88  Aligned_cols=60  Identities=12%  Similarity=0.034  Sum_probs=49.4

Q ss_pred             EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEecc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~  214 (224)
                      +++|||.|.+|....+.+... +++.+|||++++++.|.+..   .....+.+.++|+|++...
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~   65 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLP   65 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCS
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcC
Confidence            589999999999999988775 34599999999999998742   2336778889999998753

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.37  E-value=9.5e-05  Score=56.28  Aligned_cols=63  Identities=14%  Similarity=0.165  Sum_probs=49.6

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC---CCcccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK---GMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~---g~~~~~v~~advvv~~~~~~~  217 (224)
                      +++|||+|.+|....+.|..-- .+.+|++++++...+..+..   ....+.+.++|+||.+...+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~   68 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGV   68 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGG
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCch
Confidence            6899999999999999998863 35899988887766554322   336788889999999987653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.33  E-value=0.0001  Score=56.89  Aligned_cols=61  Identities=13%  Similarity=0.068  Sum_probs=49.9

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhcc---CCCcccccccCcEEEEecc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTK---KGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~---~g~~~~~v~~advvv~~~~  214 (224)
                      +++++||.|.+|..-++.+... +++.+|||++++.+.|....   .....+.+.++|+|++...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~   66 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLP   66 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeeccc
Confidence            4799999999999999988886 55699999999998887632   2346788899999988643

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.23  E-value=0.00037  Score=53.26  Aligned_cols=61  Identities=16%  Similarity=0.071  Sum_probs=47.2

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC----CCcccccccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK----GMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~----g~~~~~v~~advvv~~~~~  215 (224)
                      +++|||+|.+|..-.+.+.+.- ++.+|+|+++++++..+...    .-..+++.++|+||-++-.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~   67 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI   67 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH
Confidence            5899999999999998887653 24999999988876655321    1256889999999998754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.16  E-value=0.00023  Score=54.54  Aligned_cols=64  Identities=14%  Similarity=0.059  Sum_probs=50.6

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhcc------CCC------------cccccccCcEEEEec
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTK------KGM------------ATEDVITAKLIYDKY  213 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~------~g~------------~~~~v~~advvv~~~  213 (224)
                      +++++|||+|.+|......|...- .+.+|+|++++.+.+.+..      .+.            ..+.+.++|+||.++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            478999999999999999988863 3499999999988876521      011            367789999999988


Q ss_pred             ccc
Q psy13395        214 QAQ  216 (224)
Q Consensus       214 ~~~  216 (224)
                      .++
T Consensus        81 ~~~   83 (184)
T d1bg6a2          81 PAI   83 (184)
T ss_dssp             CGG
T ss_pred             chh
Confidence            765

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.13  E-value=0.00032  Score=54.52  Aligned_cols=60  Identities=10%  Similarity=0.068  Sum_probs=47.5

Q ss_pred             cEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccC------CC-----cccccccCcEEEEec
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKK------GM-----ATEDVITAKLIYDKY  213 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~------g~-----~~~~v~~advvv~~~  213 (224)
                      .+++|||.|.+|....+.|... +++.+|||++++++.|.+...      +.     ..+.+..+|+|+...
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEec
Confidence            5799999999999999999886 456999999999999976421      11     346667788888754

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.04  E-value=0.00039  Score=52.96  Aligned_cols=60  Identities=20%  Similarity=0.244  Sum_probs=48.7

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhccC--CCcccccccCcEEEEec
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKK--GMATEDVITAKLIYDKY  213 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~~--g~~~~~v~~advvv~~~  213 (224)
                      +++++||.|.+|....+.|.......+|+|+.++++++.+...  ....+.+.++|++|+..
T Consensus         1 ekIg~IGlG~MG~~ma~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   62 (156)
T d2cvza2           1 EKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCL   62 (156)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTTSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECC
T ss_pred             CeEEEEeHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHcCCcccccccccceeEEEecc
Confidence            4699999999999999999876656899999999988877422  23677888999998754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00055  Score=53.68  Aligned_cols=65  Identities=11%  Similarity=-0.002  Sum_probs=52.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhhhhccCCC----cccccccCcEEEEecccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~~  218 (224)
                      .-++++|||.|..++-..+.+....-. .+|.++|-+  +|.....|+    ..+++..+|+|||+|+..|.
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~--al~A~~dG~~v~~~~~a~~~adivvtaTGn~~v   92 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPIN--ALQAAMEGYEVTTMDEACQEGNIFVTTTGCIDI   92 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH--HHHHHHTTCEECCHHHHTTTCSEEEECSSCSCS
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeecccch--hHHhhcCceEeeehhhhhhhccEEEecCCCccc
Confidence            578999999999999999998887653 999888744  444444444    68889999999999998663

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00082  Score=51.30  Aligned_cols=61  Identities=7%  Similarity=0.066  Sum_probs=45.2

Q ss_pred             EEEEEecCHhHHH-HHHHHHHhCCc---EEEeCCcchHHhhhhccC----CCcccccccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYI-HAKAFHASLKL---KKYNRGLTEGTVTGSTKK----GMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~-hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~----g~~~~~v~~advvv~~~~~  215 (224)
                      +++|||+|.+|.. |+.++...-.+   -||++++++++.|++...    ....+.+.+.|+|+-+|..
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~   71 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSST   71 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCT
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccc
Confidence            7999999999975 78887765443   899999999999987421    1123334578988887754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00073  Score=52.83  Aligned_cols=65  Identities=12%  Similarity=0.070  Sum_probs=48.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhh---hcc---CCC------------cccccccCcEEEE
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTG---STK---KGM------------ATEDVITAKLIYD  211 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a---~~~---~g~------------~~~~v~~advvv~  211 (224)
                      ..++++|||+|..|++-+.++.....  |.|+||++++.+++.   ++.   ...            ..+.+.++||||.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN   96 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTN   96 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecc
Confidence            56899999999999999998888643  499999988765543   221   111            2345679999999


Q ss_pred             ecccc
Q psy13395        212 KYQAQ  216 (224)
Q Consensus       212 ~~~~~  216 (224)
                      +|..-
T Consensus        97 ~Tp~G  101 (182)
T d1vi2a1          97 GTKVG  101 (182)
T ss_dssp             CSSTT
T ss_pred             ccCCc
Confidence            99754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.68  E-value=0.0016  Score=50.93  Aligned_cols=64  Identities=11%  Similarity=-0.035  Sum_probs=52.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhhhhccCCC----cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVTGSTKKGM----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~a~~~~g~----~~~~v~~advvv~~~~~~~  217 (224)
                      .-++++|+|.|..++-..+.+...--. .|+-.+|  ..++....+|+    ..+++..+|||||+|+..+
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP--i~alqA~mdGf~v~~~~~a~~~aDi~vTaTGn~~   90 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP--ICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVD   90 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH--HHHHHHHTTTCEECCHHHHTTTCSEEEECCSSSS
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecCc--hhhHHHHhcCCccCchhHccccCcEEEEcCCCCc
Confidence            468999999999999999999888764 8887777  44454455665    6888999999999999865

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.58  E-value=0.001  Score=51.33  Aligned_cols=64  Identities=14%  Similarity=0.113  Sum_probs=44.6

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccCCCcccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~~  216 (224)
                      .-+++|+|+|..|+.|++++...-.+   -|++|+++..+...-....-..+...+-|+||.+|...
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~   69 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSA   69 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTT
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEeCCCc
Confidence            35799999999999999999875444   88999987755443321111233344679998888654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.41  E-value=0.0011  Score=52.39  Aligned_cols=65  Identities=15%  Similarity=0.114  Sum_probs=50.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC------CC-----------cccccccCcEEEEec
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK------GM-----------ATEDVITAKLIYDKY  213 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~------g~-----------~~~~v~~advvv~~~  213 (224)
                      .-++++|||+|..|.+....+..-. ++.+|+|+++.++.+.+.+.      ++           ..+++.++|+||-++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiav   85 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   85 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECS
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcC
Confidence            3467999999999999888877653 35999999999988876321      22           356788999999998


Q ss_pred             ccc
Q psy13395        214 QAQ  216 (224)
Q Consensus       214 ~~~  216 (224)
                      ..|
T Consensus        86 Ps~   88 (189)
T d1n1ea2          86 PTQ   88 (189)
T ss_dssp             CHH
T ss_pred             cHH
Confidence            665

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0016  Score=48.72  Aligned_cols=63  Identities=13%  Similarity=0.145  Sum_probs=48.8

Q ss_pred             EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhccCC----------CcccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGSTKKG----------MATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~~~g----------~~~~~v~~advvv~~~~~~~  217 (224)
                      +++|||+|.+|..-...|... +++.+|+|++++.+.+......          -..+++..+|+|+-++.+++
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~   75 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ   75 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccc
Confidence            689999999999988888776 3459999999877655432111          15778889999999998864

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.35  E-value=0.0034  Score=47.73  Aligned_cols=66  Identities=14%  Similarity=-0.002  Sum_probs=47.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhc------cCC------CcccccccCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGST------KKG------MATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~------~~g------~~~~~v~~advvv~~~~~~  216 (224)
                      +-.+++|||+|..|......+..--   .+.++++++++++..+..      ..+      -..+++.+|||||.+.+.+
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~~~adivvitag~~   83 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAP   83 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHHhccccEEEEecccc
Confidence            4568999999999988776666543   249999999887655431      111      1578999999999988764


Q ss_pred             c
Q psy13395        217 H  217 (224)
Q Consensus       217 ~  217 (224)
                      .
T Consensus        84 ~   84 (146)
T d1ez4a1          84 Q   84 (146)
T ss_dssp             -
T ss_pred             c
Confidence            3

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.33  E-value=0.0027  Score=48.30  Aligned_cols=66  Identities=11%  Similarity=0.002  Sum_probs=48.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhhc------cC--CC-----cccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGST------KK--GM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~~------~~--g~-----~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||+|..|......+..---   +.++++++++++..+..      ..  ..     ..+++.+||+||.+.+.
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~   84 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA   84 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEeccc
Confidence            67789999999999887766655322   49999999887655531      11  11     67999999999998877


Q ss_pred             cc
Q psy13395        216 QH  217 (224)
Q Consensus       216 ~~  217 (224)
                      +.
T Consensus        85 ~~   86 (148)
T d1ldna1          85 NQ   86 (148)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.31  E-value=0.0032  Score=47.75  Aligned_cols=65  Identities=14%  Similarity=-0.014  Sum_probs=46.3

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC--C-cEEEeCCcchHHhhhh------ccCCC-------cccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL--K-LKKYNRGLTEGTVTGS------TKKGM-------ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~--~-i~v~~R~~~~a~~~a~------~~~g~-------~~~~v~~advvv~~~~~~  216 (224)
                      +..++|||+|..|..-...+..-.  . +.++++++++++..+.      ...+.       ..+++.++||||.+.+.+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~   80 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR   80 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecccc
Confidence            467999999999988766654322  1 3999999988765432      11111       578899999999998865


Q ss_pred             c
Q psy13395        217 H  217 (224)
Q Consensus       217 ~  217 (224)
                      .
T Consensus        81 ~   81 (143)
T d1llda1          81 Q   81 (143)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.24  E-value=0.0046  Score=47.04  Aligned_cols=62  Identities=13%  Similarity=0.058  Sum_probs=44.2

Q ss_pred             cEEEEEecCHhHH-HHHHHHHHhCCc--EEEeCCcchHHhhhhccC--C-C-ccccc--ccCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAY-IHAKAFHASLKL--KKYNRGLTEGTVTGSTKK--G-M-ATEDV--ITAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~-~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~--g-~-~~~~v--~~advvv~~~~~  215 (224)
                      -+++|||+|.+|. .|+.++...-.+  .++++++++++.+++...  . + ..+++  .+.|+|+-+|..
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~   72 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAAT   72 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCG
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccc
Confidence            4799999999996 488887765554  889999999999987421  1 1 22232  256888877654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.24  E-value=0.0025  Score=50.05  Aligned_cols=63  Identities=14%  Similarity=0.040  Sum_probs=51.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhhhhccCC----------CcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVTGSTKKG----------MATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~a~~~~g----------~~~~~v~~advvv~~~~  214 (224)
                      .+-+++|||+|..+..=++....+--. .+++.++++.+.+.+...+          ...+.+.+|||||++-.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aal  104 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVL  104 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeee
Confidence            488999999999999999988887765 9999999998877763211          15788999999999743

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.24  E-value=0.003  Score=48.89  Aligned_cols=63  Identities=14%  Similarity=0.116  Sum_probs=45.7

Q ss_pred             cEEEEEecCHhHHH-HHHHHHHhCC---c-EEEeCCcchHHhhhhccCCC----cccc-cc--cCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYI-HAKAFHASLK---L-KKYNRGLTEGTVTGSTKKGM----ATED-VI--TAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~-hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~g~----~~~~-v~--~advvv~~~~~~  216 (224)
                      -+++|||+|.+|+. |+.++....+   + -|++|++++++.|++.....    ..++ +.  +-|+|+-+|...
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~   78 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE   78 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccc
Confidence            47999999999976 8999987654   3 68999999999998753211    2223 32  468887777543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.23  E-value=0.0051  Score=46.57  Aligned_cols=63  Identities=13%  Similarity=0.056  Sum_probs=45.8

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhhccC------CCcccccccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGSTKK------GMATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~~~~------g~~~~~v~~advvv~~~~~~  216 (224)
                      ++++|||+|.+|.+-++++.....   +..|+|+++..+...+...      ........++|+|+-++-.+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~   73 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR   73 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCch
Confidence            479999999999999999987653   3678898887766555321      11334445899999887643

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.22  E-value=0.0042  Score=47.50  Aligned_cols=63  Identities=11%  Similarity=0.039  Sum_probs=46.2

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhc------cCCC--------cccccccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGST------KKGM--------ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~------~~g~--------~~~~v~~advvv~~~~~~  216 (224)
                      ..++|||+|..+.... .++...++   .++++++++++..+..      ..+.        ..+++.+|||||.+.+.+
T Consensus         4 ~KI~IIGaG~VG~~~a-~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMA-TLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CEEEEECCSHHHHHHH-HHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CeEEEECCCHHHHHHH-HHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            4799999999986554 34444554   9999999887766541      1111        578999999999998865


Q ss_pred             c
Q psy13395        217 H  217 (224)
Q Consensus       217 ~  217 (224)
                      .
T Consensus        83 ~   83 (150)
T d1t2da1          83 K   83 (150)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.03  E-value=0.0026  Score=48.89  Aligned_cols=40  Identities=15%  Similarity=0.183  Sum_probs=35.7

Q ss_pred             EEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST  194 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~  194 (224)
                      +++|||.|.+|...++.|..- +++.+|||++++++.|.+.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~   43 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA   43 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence            589999999999999998876 4569999999999999874

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.00  E-value=0.005  Score=49.41  Aligned_cols=64  Identities=13%  Similarity=0.169  Sum_probs=46.0

Q ss_pred             CCcEEEEEecCHhHHH-HHHHHHHhCCc---EEEeCCcchHHhhhhccCCC---------cccccc---cCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYI-HAKAFHASLKL---KKYNRGLTEGTVTGSTKKGM---------ATEDVI---TAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~-hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~g~---------~~~~v~---~advvv~~~~~  215 (224)
                      +.-+++|||+|..|+. |+.++...-.+   -|++|++++++.|+++. |+         ..+++.   +-|+|+.+|..
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~-~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~  110 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEY-GVDPRKIYDYSNFDKIAKDPKIDAVYIILPN  110 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHT-TCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhh-ccccccccccCchhhhcccccceeeeeccch
Confidence            4579999999999974 66776654343   89999999999998752 22         223332   57888887765


Q ss_pred             c
Q psy13395        216 Q  216 (224)
Q Consensus       216 ~  216 (224)
                      +
T Consensus       111 ~  111 (221)
T d1h6da1         111 S  111 (221)
T ss_dssp             G
T ss_pred             h
Confidence            4

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.92  E-value=0.005  Score=46.77  Aligned_cols=62  Identities=10%  Similarity=0.017  Sum_probs=45.2

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhC---CcEEEeCCcchHHhhhhc------cCCC-------cccccccCcEEEEecc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASL---KLKKYNRGLTEGTVTGST------KKGM-------ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~---~i~v~~R~~~~a~~~a~~------~~g~-------~~~~v~~advvv~~~~  214 (224)
                      ++.++|||+|..|...+..+....   .+.++++++++++..+..      ..+.       ..+++.+|||||-+.+
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG   78 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLG   78 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecc
Confidence            478999999999977766655433   238999999987655531      1111       5789999999998765

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.83  E-value=0.0033  Score=48.58  Aligned_cols=62  Identities=15%  Similarity=0.205  Sum_probs=45.9

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhccC---CC----ccccc---ccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTKK---GM----ATEDV---ITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~~---g~----~~~~v---~~advvv~~~~~~  216 (224)
                      +++|||+|..|+.|++++...-.+   -|+++++++++.|+++..   ..    ..+++   .+-|+|+-+|...
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~   77 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS   77 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccch
Confidence            799999999999999999875443   789999999999987431   11    22222   3678888877543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.82  E-value=0.0033  Score=49.28  Aligned_cols=64  Identities=13%  Similarity=0.006  Sum_probs=44.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHHhhhhc---------cCC-----------------Ccccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVTGST---------KKG-----------------MATEDVI  204 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~a~~---------~~g-----------------~~~~~v~  204 (224)
                      +-++++|||+|.+|..-...++.. +++.+|+++++..+...++         ..+                 ...+++.
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   82 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFG   82 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGG
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccc
Confidence            688999999999998765444443 3459999998875443221         011                 1467899


Q ss_pred             cCcEEEEeccc
Q psy13395        205 TAKLIYDKYQA  215 (224)
Q Consensus       205 ~advvv~~~~~  215 (224)
                      ++|+|+.+-..
T Consensus        83 ~adlViEav~E   93 (186)
T d1wdka3          83 NVDLVVEAVVE   93 (186)
T ss_dssp             GCSEEEECCCS
T ss_pred             ccceeeeeecc
Confidence            99999987643

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.82  E-value=0.008  Score=46.43  Aligned_cols=66  Identities=8%  Similarity=-0.070  Sum_probs=48.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhhc------cCC-------CcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGST------KKG-------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~~------~~g-------~~~~~v~~advvv~~~~~  215 (224)
                      ..+.++|||+|..|......+...--   +.++++++++++..+..      ..+       -..+++.++||||.+.+.
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg~   98 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGV   98 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECCSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEecCC
Confidence            45799999999999987777655322   39999998887655531      111       168899999999988776


Q ss_pred             cc
Q psy13395        216 QH  217 (224)
Q Consensus       216 ~~  217 (224)
                      ..
T Consensus        99 ~~  100 (160)
T d1i0za1          99 RQ  100 (160)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.81  E-value=0.0082  Score=45.24  Aligned_cols=63  Identities=17%  Similarity=0.046  Sum_probs=41.9

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhhcc-C-----C------CcccccccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGSTK-K-----G------MATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~~~-~-----g------~~~~~v~~advvv~~~~~~  216 (224)
                      +.++|||+|..|......+..-.-   +.++++++++++..+... .     +      -..+++.+|||||.+-+..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~   79 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN   79 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccc
Confidence            368999999999888766555322   399999998765555311 1     1      1688999999999886654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.75  E-value=0.0079  Score=46.59  Aligned_cols=63  Identities=10%  Similarity=0.177  Sum_probs=46.6

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcc--hHHhhhhccC----C--C----------cccccccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLT--EGTVTGSTKK----G--M----------ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~--~a~~~a~~~~----g--~----------~~~~v~~advvv~~~~~  215 (224)
                      .++|||+|..|.+-...+..-.. +.+|+|..+  ..+.+...+.    +  +          ..+++.++|+||-++-.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avps   81 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVST   81 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccch
Confidence            58999999999999999987754 599999544  4555544221    1  1          35678899999999876


Q ss_pred             cc
Q psy13395        216 QH  217 (224)
Q Consensus       216 ~~  217 (224)
                      |+
T Consensus        82 ~~   83 (180)
T d1txga2          82 DG   83 (180)
T ss_dssp             GG
T ss_pred             hh
Confidence            64

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.63  E-value=0.011  Score=45.37  Aligned_cols=62  Identities=18%  Similarity=0.228  Sum_probs=42.2

Q ss_pred             CcEEEEEecCHhHHHH-HHHHHHhCCc----EEEeCCcchH-HhhhhccCCC-----------cccccccCcEEEEeccc
Q psy13395        153 DLVLAIMGSGAQAYIH-AKAFHASLKL----KKYNRGLTEG-TVTGSTKKGM-----------ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~h-l~a~~~v~~i----~v~~R~~~~a-~~~a~~~~g~-----------~~~~v~~advvv~~~~~  215 (224)
                      .-+++|||+|..|..+ ++.+ +.+|.    .+.+|+++.. .+|+++. |+           ...+..+-|||+.+|.+
T Consensus         4 kirvaIIGaG~ig~~~~~~~l-~~~~~~el~avas~~~~~~~~~~a~~~-~i~~~~~~~d~l~~~~~~~~iDiVf~ATpa   81 (157)
T d1nvmb1           4 KLKVAIIGSGNIGTDLMIKVL-RNAKYLEMGAMVGIDAASDGLARAQRM-GVTTTYAGVEGLIKLPEFADIDFVFDATSA   81 (157)
T ss_dssp             CEEEEEECCSHHHHHHHHHHH-HHCSSEEEEEEECSCTTCHHHHHHHHT-TCCEESSHHHHHHHSGGGGGEEEEEECSCH
T ss_pred             CcEEEEEcCcHHHHHHHHHHH-hhCCcceEEEEEecchhccchhhhhhc-CCcccccceeeeeecccccccCEEEEcCCc
Confidence            4689999999999864 4554 55663    7789988743 4666532 22           12234578999999986


Q ss_pred             c
Q psy13395        216 Q  216 (224)
Q Consensus       216 ~  216 (224)
                      .
T Consensus        82 g   82 (157)
T d1nvmb1          82 S   82 (157)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.59  E-value=0.011  Score=45.14  Aligned_cols=64  Identities=13%  Similarity=-0.030  Sum_probs=44.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhc------cCCC---------cccccccCcEEEEec
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGST------KKGM---------ATEDVITAKLIYDKY  213 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~------~~g~---------~~~~v~~advvv~~~  213 (224)
                      +.+.++|||+|..|..-... +...++   .+++.++++++..+..      ..+.         ..+++.+|||||.+.
T Consensus         6 k~~KI~IIGaG~VG~~lA~~-l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita   84 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYL-CALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   84 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHH-HHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHH-HHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence            57899999999999554333 333343   8999999887666541      1111         357889999999987


Q ss_pred             ccc
Q psy13395        214 QAQ  216 (224)
Q Consensus       214 ~~~  216 (224)
                      +..
T Consensus        85 g~~   87 (154)
T d1pzga1          85 GLT   87 (154)
T ss_dssp             SCS
T ss_pred             ccc
Confidence            653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.56  E-value=0.019  Score=40.85  Aligned_cols=66  Identities=15%  Similarity=0.050  Sum_probs=50.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchH-Hhhhhc------cCCCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEG-TVTGST------KKGMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a-~~~a~~------~~g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|..|..=++.+...-. +.+|++..... +.+++.      ...+..+++.++++|+.+|....
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~   84 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDT   84 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHH
Confidence            57899999999999999999888654 48898877653 344442      12457889999999999987643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.51  E-value=0.0085  Score=43.55  Aligned_cols=62  Identities=11%  Similarity=0.011  Sum_probs=48.2

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC----C------C-cccccccCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK----G------M-ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~----g------~-~~~~v~~advvv~~~~~  215 (224)
                      +++.|+|+|..|+.-.+.|...- ++.+++.++++.+.+.+...    |      + ....+.+||.||.++..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~   74 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGA   74 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCc
Confidence            46899999999999999988754 35999999999999876321    1      1 24458899988887764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.43  E-value=0.0098  Score=44.57  Aligned_cols=63  Identities=10%  Similarity=-0.038  Sum_probs=44.8

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhhc------cCC------CcccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGST------KKG------MATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~~------~~g------~~~~~v~~advvv~~~~~~~  217 (224)
                      +++|||+|..|......+..---   +.++++++++++..+..      ...      -..+++.+|||||.+.+.+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~   79 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQ   79 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccccc
Confidence            58999999998876554443321   39999999887665541      011      15788999999999987653

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.40  E-value=0.019  Score=42.78  Aligned_cols=62  Identities=8%  Similarity=-0.058  Sum_probs=44.0

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhhc------cCC--------CcccccccCcEEEEecccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGST------KKG--------MATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~~------~~g--------~~~~~v~~advvv~~~~~~  216 (224)
                      .++|||+|..|......+..-.-   +.++++++++++..+..      ...        -..+++.+||+||.+.+..
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            58999999999886655544321   39999999887655431      011        1578899999999987653

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.013  Score=45.07  Aligned_cols=67  Identities=10%  Similarity=-0.033  Sum_probs=48.3

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhhc------cCC-------CcccccccCcEEEEecccc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGST------KKG-------MATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~~------~~g-------~~~~~v~~advvv~~~~~~  216 (224)
                      ...++|||+|..|.+...++..-.-   +.++++++++++..+..      ..+       -..+++.++||||.+-+..
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvitag~~   98 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAGAR   98 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECCSCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEecccc
Confidence            4579999999999988776555322   39999999887655431      111       1688999999999888775


Q ss_pred             ccc
Q psy13395        217 HSN  219 (224)
Q Consensus       217 ~~~  219 (224)
                      -..
T Consensus        99 ~~~  101 (159)
T d2ldxa1          99 MVS  101 (159)
T ss_dssp             CCT
T ss_pred             cCC
Confidence            443

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.08  E-value=0.034  Score=41.69  Aligned_cols=63  Identities=10%  Similarity=-0.012  Sum_probs=45.0

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCC---cEEEeCCcchHHhhhh----c--cCC--------CcccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLK---LKKYNRGLTEGTVTGS----T--KKG--------MATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~---i~v~~R~~~~a~~~a~----~--~~g--------~~~~~v~~advvv~~~~~~~  217 (224)
                      .++|||+|..|..-...+..---   +.++++++++++..+.    .  ..+        -..+++.++||||.+.+.+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~~   81 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLAR   81 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEeccccC
Confidence            58999999999877765554322   3999999988765432    1  111        15789999999999887654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.04  E-value=0.021  Score=42.41  Aligned_cols=40  Identities=18%  Similarity=0.135  Sum_probs=33.9

Q ss_pred             CCcEEEEEe-cCHhHHHHHHHHHHh-CCcEEEeCCcchHHhh
Q psy13395        152 KDLVLAIMG-SGAQAYIHAKAFHAS-LKLKKYNRGLTEGTVT  191 (224)
Q Consensus       152 ~~~~l~iiG-aG~QA~~hl~a~~~v-~~i~v~~R~~~~a~~~  191 (224)
                      +-++++||| .|.+|.+-.+.|... +.+.+|+|+++.....
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~   49 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAES   49 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccch
Confidence            678999999 999999999999876 5569999998776544

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.92  E-value=0.018  Score=45.47  Aligned_cols=60  Identities=18%  Similarity=0.196  Sum_probs=41.2

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchH-HhhhhccCCC----cccccccCcEEEEecc
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEG-TVTGSTKKGM----ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a-~~~a~~~~g~----~~~~v~~advvv~~~~  214 (224)
                      .++++|||.|.||++|..-|..- .+ .+.+-.+.+. .+.| +..|+    ..|++..||||.--+.
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDS-G~~V~VGLr~gs~s~~~A-~~~Gf~v~~~~eA~~~aDiim~L~P   81 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDS-GVDVTVGLRSGSATVAKA-EAHGLKVADVKTAVAAADVVMILTP   81 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHT-TCCEEEECCTTCHHHHHH-HHTTCEEECHHHHHHTCSEEEECSC
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhc-CCCEEEEcCCCCccHHHH-hhhccccccHHHHhhhcCeeeeecc
Confidence            68999999999999999887664 23 3444333322 2222 23465    6889999999986554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.90  E-value=0.022  Score=41.44  Aligned_cols=63  Identities=13%  Similarity=0.118  Sum_probs=49.0

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC-----C--C-----cccccccCcEEEEeccccc
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK-----G--M-----ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~-----g--~-----~~~~v~~advvv~~~~~~~  217 (224)
                      ++.|+|+|.+|+.-++.|.... ++.+.++++++.+.+.++..     |  .     ....+.+||.++..|....
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~   77 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE   77 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH
Confidence            5899999999999999987754 35999999999988776421     1  1     3455789999999886543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.61  E-value=0.047  Score=40.70  Aligned_cols=62  Identities=16%  Similarity=0.076  Sum_probs=44.1

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhc------cCC----C----cccccccCcEEEEecccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGST------KKG----M----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~------~~g----~----~~~~v~~advvv~~~~~~  216 (224)
                      +.++|||+|..|..-..++.. .++   .+++.++++++..+..      ..+    +    ..+++.++||||.+.+..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~-~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAA-KELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeecc
Confidence            479999999998776555443 343   8899988886655431      111    1    578999999999988753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.47  E-value=0.019  Score=42.42  Aligned_cols=40  Identities=13%  Similarity=0.079  Sum_probs=34.9

Q ss_pred             EEEEE-ecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc
Q psy13395        155 VLAIM-GSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST  194 (224)
Q Consensus       155 ~l~ii-GaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~  194 (224)
                      +++|+ |+|.+|+.-.+.+...- ++.+|+|+++++++++++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~   43 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAE   43 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            57899 89999999999999874 469999999999888773

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.46  E-value=0.033  Score=43.90  Aligned_cols=42  Identities=7%  Similarity=-0.027  Sum_probs=35.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc-EEEeCCcchHHhhhh
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL-KKYNRGLTEGTVTGS  193 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i-~v~~R~~~~a~~~a~  193 (224)
                      .+-+++|||+|..|..-++....+--. .+++.++++.+.+.+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~   70 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES   70 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHH
Confidence            477999999999999888887777665 999999988777665

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.037  Score=43.24  Aligned_cols=37  Identities=11%  Similarity=-0.023  Sum_probs=29.0

Q ss_pred             CcEEEEEecCHhHHHHHHHHHHh-CCcEEEeCCcchHH
Q psy13395        153 DLVLAIMGSGAQAYIHAKAFHAS-LKLKKYNRGLTEGT  189 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~hl~a~~~v-~~i~v~~R~~~~a~  189 (224)
                      -++++|||+|.+|..-...+... +++.+|+++++..+
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILA   41 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            47899999999998877766653 23499999998654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.23  E-value=0.032  Score=43.54  Aligned_cols=62  Identities=13%  Similarity=0.126  Sum_probs=41.0

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhc----------------cCCC-----cccccccCcEEE
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGST----------------KKGM-----ATEDVITAKLIY  210 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~----------------~~g~-----~~~~v~~advvv  210 (224)
                      +++|.|.|.+||.++|++...-.+   .|-++.+.........                ..++     ..+...+.||||
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            699999999999999998874334   5555555433222211                0111     344556899999


Q ss_pred             Eecccc
Q psy13395        211 DKYQAQ  216 (224)
Q Consensus       211 ~~~~~~  216 (224)
                      .+|+.-
T Consensus        83 ecTG~f   88 (178)
T d1b7go1          83 DTTPNG   88 (178)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            999863

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.05  E-value=0.053  Score=42.79  Aligned_cols=62  Identities=11%  Similarity=0.100  Sum_probs=42.8

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++|+|||.|.+|+.-.+.+.. +.  +.+|++.............--..+-+.++|||+....
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~-fg~~V~~~d~~~~~~~~~~~~~~~~l~~~l~~sDii~~~~p  105 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEG-FGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVP  105 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSC
T ss_pred             cCCeEEEecccccchhHHHhHhh-hcccccccCcccccccccceeeeccccccccccccccccCC
Confidence            47899999999999999999864 55  3788877654332221111124566779999997653

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=93.69  E-value=0.034  Score=45.16  Aligned_cols=63  Identities=19%  Similarity=0.226  Sum_probs=40.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHh-----CCc-EEEe-C----CcchHHhhhhccCC----CcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHAS-----LKL-KKYN-R----GLTEGTVTGSTKKG----MATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v-----~~i-~v~~-R----~~~~a~~~a~~~~g----~~~~~v~~advvv~~~~  214 (224)
                      +-++++|||.|.||++|..-|..-     -.+ .+.+ |    +.++|++-.=...+    ...|++..||||.--+.
T Consensus        43 g~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP  120 (226)
T d1qmga2          43 GIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS  120 (226)
T ss_dssp             TCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred             CCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence            668999999999999999999883     223 3332 2    22333222211111    14689999999987654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.36  E-value=0.058  Score=41.92  Aligned_cols=61  Identities=16%  Similarity=0.132  Sum_probs=44.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++|+|||.|.+|+...+.+.... .+.+|+|++....   .....-..+.+.++|||+...-.
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~---~~~~~~l~ell~~sDiv~~~~pl  102 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGP---WRFTNSLEEALREARAAVCALPL  102 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSS---SCCBSCSHHHHTTCSEEEECCCC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccccccc---eeeeechhhhhhccchhhccccc
Confidence            5789999999999999998877643 2489998865321   11122357788999999987643

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=93.28  E-value=0.033  Score=44.64  Aligned_cols=63  Identities=16%  Similarity=0.139  Sum_probs=46.5

Q ss_pred             CCcEEEEEecCH----hHHHHHHHHHHhCC---c-EEEeCCcchHHhhhhccC--CC----cccccc---cCcEEEEecc
Q psy13395        152 KDLVLAIMGSGA----QAYIHAKAFHASLK---L-KKYNRGLTEGTVTGSTKK--GM----ATEDVI---TAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~----QA~~hl~a~~~v~~---i-~v~~R~~~~a~~~a~~~~--g~----~~~~v~---~advvv~~~~  214 (224)
                      .+-+++|||+|.    .+..|+.++....+   + -||+|++++++.|+++..  ..    ..+++.   +-|+|+-+|-
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp   94 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK   94 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence            578999999986    77899999988765   3 799999999999988531  11    233332   4677877764

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.14  E-value=0.087  Score=39.51  Aligned_cols=61  Identities=16%  Similarity=0.151  Sum_probs=41.1

Q ss_pred             EEEEEe-cCHhHHHHHHHHHHhCCc----EEEeCCcchHHhhh----hcc--------CCC-cccccccCcEEEEecccc
Q psy13395        155 VLAIMG-SGAQAYIHAKAFHASLKL----KKYNRGLTEGTVTG----STK--------KGM-ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiG-aG~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a----~~~--------~g~-~~~~v~~advvv~~~~~~  216 (224)
                      +++||| +|..|......+....++    .+++..+ .++..+    +..        .+. ..+++.+|||||.+-+..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            589999 599998777766555443    8888754 444332    210        011 467889999999987764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.056  Score=41.62  Aligned_cols=63  Identities=11%  Similarity=0.073  Sum_probs=47.2

Q ss_pred             CcEEEEEe-cCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC-----CC-----cccccccCcEEEEeccc
Q psy13395        153 DLVLAIMG-SGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK-----GM-----ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       153 ~~~l~iiG-aG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~-----g~-----~~~~v~~advvv~~~~~  215 (224)
                      -++++|+| +|.+|+.-++.+++.- ++++..|++++.+.+.....     .+     ..+++.+.|+||...+.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            46799999 7999999999877653 35999999988766554211     12     46778899999988764

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.39  E-value=0.11  Score=39.94  Aligned_cols=64  Identities=11%  Similarity=0.036  Sum_probs=42.3

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhcc-----------------CCC-----cccccccCcE
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGSTK-----------------KGM-----ATEDVITAKL  208 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~~-----------------~g~-----~~~~v~~adv  208 (224)
                      .+++|.|.|.+||.++|++...-.+   .|-+.++........+.                 .++     ..+...+.||
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            5799999999999999999764444   56666554432222110                 011     3344568999


Q ss_pred             EEEeccccc
Q psy13395        209 IYDKYQAQH  217 (224)
Q Consensus       209 vv~~~~~~~  217 (224)
                      |+..|+...
T Consensus        83 ViEcTG~f~   91 (172)
T d2czca2          83 IVDATPGGI   91 (172)
T ss_dssp             EEECCSTTH
T ss_pred             EEECCCCCC
Confidence            999998754

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.22  E-value=0.094  Score=39.73  Aligned_cols=61  Identities=13%  Similarity=0.208  Sum_probs=39.6

Q ss_pred             EEEEEecCHhHHHHHHH-HH---HhCC---cEEEeCCcchHHhhhh---c--cCC-------CcccccccCcEEEEeccc
Q psy13395        155 VLAIMGSGAQAYIHAKA-FH---ASLK---LKKYNRGLTEGTVTGS---T--KKG-------MATEDVITAKLIYDKYQA  215 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a-~~---~v~~---i~v~~R~~~~a~~~a~---~--~~g-------~~~~~v~~advvv~~~~~  215 (224)
                      .++|||+|..+...+-. +.   ...+   +.+++.++++++.-.+   .  ...       -..+++.+||+||.+-+.
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~~   81 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRP   81 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCCT
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEeccc
Confidence            58999999655444322 22   2222   3999999998764333   1  111       167899999999998764

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.19  E-value=0.024  Score=43.01  Aligned_cols=26  Identities=8%  Similarity=0.261  Sum_probs=22.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK  177 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~  177 (224)
                      ..-+++|||+|.+|+.|++++....+
T Consensus         6 ~k~kv~iIG~G~~g~~h~~~l~~~~~   31 (172)
T d1lc0a1           6 GKFGVVVVGVGRAGSVRLRDLKDPRS   31 (172)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHTSHHH
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHhCCC
Confidence            45689999999999999999988765

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=92.13  E-value=0.17  Score=34.48  Aligned_cols=66  Identities=15%  Similarity=0.094  Sum_probs=45.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcch--HHhhhhc---cC-CCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTE--GTVTGST---KK-GMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~--a~~~a~~---~~-g~~~~~v~~advvv~~~~~~~  217 (224)
                      ..++++|||.|..+.+-++.|...-- +.+|+.....  .+.+.+.   .. ....+.+.+.|+||.+.+--.
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi~~   76 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIAL   76 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTSCT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCCCCC
Confidence            45689999999999999998877653 4999875542  2223221   11 224666789999999987643

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.07  E-value=0.12  Score=38.59  Aligned_cols=61  Identities=11%  Similarity=0.146  Sum_probs=41.1

Q ss_pred             EEEEEec-CHhHHHHHHHHHHhCCc----EEEeCCcchHHhhhhc----cCC---C-----cccccccCcEEEEecccc
Q psy13395        155 VLAIMGS-GAQAYIHAKAFHASLKL----KKYNRGLTEGTVTGST----KKG---M-----ATEDVITAKLIYDKYQAQ  216 (224)
Q Consensus       155 ~l~iiGa-G~QA~~hl~a~~~v~~i----~v~~R~~~~a~~~a~~----~~g---~-----~~~~v~~advvv~~~~~~  216 (224)
                      .++|||+ |..|..-...+. ..++    .+++.++.+++++--.    ...   .     ..+++.+|||||-+-+..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~-~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~   79 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             eEEEECCCChHHHHHHHHHH-hCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence            6899995 999977765544 3443    8889887766554211    111   1     367789999999876653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.83  E-value=0.17  Score=38.11  Aligned_cols=65  Identities=6%  Similarity=-0.073  Sum_probs=43.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhc----c----CCCcccccc-----cCcEEEEecccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGST----K----KGMATEDVI-----TAKLIYDKYQAQ  216 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~----~----~g~~~~~v~-----~advvv~~~~~~  216 (224)
                      .-.+++|+|+|..+...++.+.....-  .+.++++++.+...+-    .    ..-..+++.     .+|+||..++..
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~  107 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  107 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcH
Confidence            577899999999999999888776542  6677888765544331    0    011222222     389999998864

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=91.78  E-value=0.1  Score=40.86  Aligned_cols=62  Identities=15%  Similarity=0.148  Sum_probs=42.9

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhh--ccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGS--TKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~--~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|||.|.+|+.-.+.+.. +.  +..|+|..........  ....-..+-+.++|+|+-..-
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~-fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~p  113 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKA-FGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCG  113 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHT-TTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCC
T ss_pred             eCceEEEeccccccccceeeeec-cccceeeccCcccccchhhhccccccchhhccccCCEEEEeec
Confidence            46799999999999999998765 44  3788887654322221  112224566789999987654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.62  E-value=0.1  Score=39.05  Aligned_cols=61  Identities=10%  Similarity=0.025  Sum_probs=40.7

Q ss_pred             EEEEEec-CHhHHHHHHHHHHhCC----cEEEeCCcc--hHHhhhh----c----cCCC--------cccccccCcEEEE
Q psy13395        155 VLAIMGS-GAQAYIHAKAFHASLK----LKKYNRGLT--EGTVTGS----T----KKGM--------ATEDVITAKLIYD  211 (224)
Q Consensus       155 ~l~iiGa-G~QA~~hl~a~~~v~~----i~v~~R~~~--~a~~~a~----~----~~g~--------~~~~v~~advvv~  211 (224)
                      .++|||+ |..|..-..++.. .+    +.+++++++  +++.++.    .    ....        ..+++.+|||||-
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~-~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAK-EPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT-CTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHh-CCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            5899995 9999987665543 33    388998763  3444432    1    1111        4688899999999


Q ss_pred             ecccc
Q psy13395        212 KYQAQ  216 (224)
Q Consensus       212 ~~~~~  216 (224)
                      +-+.+
T Consensus        81 tAG~~   85 (145)
T d1hyea1          81 TSGVP   85 (145)
T ss_dssp             CCSCC
T ss_pred             ecccc
Confidence            87654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.46  E-value=0.29  Score=37.41  Aligned_cols=64  Identities=13%  Similarity=0.118  Sum_probs=49.7

Q ss_pred             CCcEEEEEe-cCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhcc---CC-------C-----cccccccCcEEEEecc
Q psy13395        152 KDLVLAIMG-SGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTK---KG-------M-----ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiG-aG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~---~g-------~-----~~~~v~~advvv~~~~  214 (224)
                      ..++++|.| +|.+++...+.|...-- +.+.+|++++.+.+++..   ..       +     ..+.+.++||||...+
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeeecCc
Confidence            578999999 79999999999877643 499999999988877621   11       1     3556779999999876


Q ss_pred             c
Q psy13395        215 A  215 (224)
Q Consensus       215 ~  215 (224)
                      .
T Consensus       102 ~  102 (191)
T d1luaa1         102 I  102 (191)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.35  Score=35.98  Aligned_cols=65  Identities=8%  Similarity=0.033  Sum_probs=44.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhc----cCCC---ccccc---------ccCcEEEEec
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGST----KKGM---ATEDV---------ITAKLIYDKY  213 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~----~~g~---~~~~v---------~~advvv~~~  213 (224)
                      ...+++|+|+|..+...++.+.....  +.++++++++.+...+-    ....   ...++         ..+|+||.++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            46789999999999999998877553  47889998876643221    0001   11111         3689999998


Q ss_pred             ccc
Q psy13395        214 QAQ  216 (224)
Q Consensus       214 ~~~  216 (224)
                      +..
T Consensus       106 G~~  108 (171)
T d1pl8a2         106 GAE  108 (171)
T ss_dssp             CCH
T ss_pred             CCc
Confidence            864

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.34  E-value=0.23  Score=37.42  Aligned_cols=65  Identities=8%  Similarity=0.061  Sum_probs=43.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhc--------cC-CC--ccccc------ccCcEEEEe
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGST--------KK-GM--ATEDV------ITAKLIYDK  212 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~--------~~-g~--~~~~v------~~advvv~~  212 (224)
                      .-.+|+|+|+|+.|...++.....-.  +.+.++++++.+...+-        +. ..  ..+++      ..+|+||.+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~  107 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA  107 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeec
Confidence            35899999999999999999877542  37788988876543321        00 10  11112      248999999


Q ss_pred             cccc
Q psy13395        213 YQAQ  216 (224)
Q Consensus       213 ~~~~  216 (224)
                      ++..
T Consensus       108 vG~~  111 (182)
T d1vj0a2         108 TGDS  111 (182)
T ss_dssp             SSCT
T ss_pred             CCch
Confidence            8764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.76  E-value=0.27  Score=37.25  Aligned_cols=65  Identities=9%  Similarity=-0.013  Sum_probs=43.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhc--------cCCCccccc------ccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGST--------KKGMATEDV------ITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~--------~~g~~~~~v------~~advvv~~~~~  215 (224)
                      .-.+|+|+|+|..|...++.....-.  +.+.++++++.+...+-        ...-..+.+      ..+|+||.+++.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~  106 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG  106 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence            56788899999999999999886532  47788888765443221        011122223      238999999986


Q ss_pred             c
Q psy13395        216 Q  216 (224)
Q Consensus       216 ~  216 (224)
                      .
T Consensus       107 ~  107 (174)
T d1jqba2         107 S  107 (174)
T ss_dssp             T
T ss_pred             H
Confidence            4

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.64  E-value=0.48  Score=35.19  Aligned_cols=66  Identities=14%  Similarity=-0.015  Sum_probs=42.4

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhc---------cCCC-cccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGST---------KKGM-ATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~---------~~g~-~~~~v~~advvv~~~~~~~  217 (224)
                      ...+++|+|+|..+...++.....-- +.+.++++++.+...+-         ...- ..+.....|+|+...+..+
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~  103 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT  103 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence            46789999999999999887665432 36778988876544321         1111 1222336798888766543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.31  E-value=0.52  Score=34.88  Aligned_cols=65  Identities=12%  Similarity=0.148  Sum_probs=44.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhccC----------CCcccccccCcEEEEeccccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGSTKK----------GMATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~~~----------g~~~~~v~~advvv~~~~~~~  217 (224)
                      .-.+|+|+|+|..+...++.....-- ..+.+++.++.+ ++.+..          ....+....+|+|+..++..+
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~-~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~  105 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKRE-AAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH  105 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHH-HHhccCCcEEEECchhhHHHHhcCCCceeeeeeecch
Confidence            57889999999999999988776432 267778777654 333210          012334457999999987654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=90.18  E-value=0.37  Score=36.98  Aligned_cols=64  Identities=8%  Similarity=0.009  Sum_probs=43.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhh---ccCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGS---TKKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~---~~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|+|+|.+|+.-++.+...-. +..|+|..........   ...-...+.+.++|+|+...-.
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~pl  110 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPL  110 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCC
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccc
Confidence            57899999999999988888765332 3888876544333322   2222256677899999876543

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.14  E-value=0.16  Score=39.14  Aligned_cols=61  Identities=11%  Similarity=0.011  Sum_probs=41.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++|+|+|.|..|+.-.+.+ ..+..  .+|+|.....+...... --..+-+.++|||+....
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~~~~~~~~~~~~-~~l~ell~~sDii~i~~p  105 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIENKLPLGNATQV-QHLSDLLNMSDVVSLHVP  105 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCCCCCTTCEEC-SCHHHHHHHCSEEEECCC
T ss_pred             cceEEEEeecccchhhhhhhc-ccccceEeeccccccchhhhhhhh-hhHHHHHhhccceeeccc
Confidence            578999999999999877754 45654  77877654332211111 124566789999987643

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=90.07  E-value=0.25  Score=38.38  Aligned_cols=64  Identities=11%  Similarity=0.035  Sum_probs=44.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhhhc---cCCCcccccccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTGST---KKGMATEDVITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a~~---~~g~~~~~v~~advvv~~~~~  215 (224)
                      ..++++|||.|..|+...+.+....- +.+|++.....+.....   ...-..+.+.++|+|+.....
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~pl  113 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPS  113 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCC
T ss_pred             cccceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCC
Confidence            46999999999999999887665332 37788876654433321   112246778899999876543

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=89.95  E-value=0.14  Score=39.15  Aligned_cols=64  Identities=16%  Similarity=0.223  Sum_probs=42.7

Q ss_pred             CCcEEEEEecCHhHHH-HHHHHHHhCC------cEEEeCCcchHHhhhhc------cCCC---------cccccccCcEE
Q psy13395        152 KDLVLAIMGSGAQAYI-HAKAFHASLK------LKKYNRGLTEGTVTGST------KKGM---------ATEDVITAKLI  209 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~-hl~a~~~v~~------i~v~~R~~~~a~~~a~~------~~g~---------~~~~v~~advv  209 (224)
                      ....++|||+|-.+.. .+..+....+      +.+++.++++++..++.      ..+.         ..+++.+||+|
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V   81 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV   81 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence            4678999999976432 2333333222      39999999998755441      1121         36889999999


Q ss_pred             EEeccc
Q psy13395        210 YDKYQA  215 (224)
Q Consensus       210 v~~~~~  215 (224)
                      |.+-+.
T Consensus        82 vitag~   87 (167)
T d1u8xx1          82 MAHIRV   87 (167)
T ss_dssp             EECCCT
T ss_pred             EECCCc
Confidence            999775

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=89.92  E-value=0.18  Score=38.43  Aligned_cols=63  Identities=11%  Similarity=0.212  Sum_probs=41.9

Q ss_pred             CcEEEEEecCHhHHH--HHHHHHHh--C---CcEEEeCCcchHHhhhh---c---cCCC---------cccccccCcEEE
Q psy13395        153 DLVLAIMGSGAQAYI--HAKAFHAS--L---KLKKYNRGLTEGTVTGS---T---KKGM---------ATEDVITAKLIY  210 (224)
Q Consensus       153 ~~~l~iiGaG~QA~~--hl~a~~~v--~---~i~v~~R~~~~a~~~a~---~---~~g~---------~~~~v~~advvv  210 (224)
                      +-.++|||+|..+..  ++..+...  +   .+.+|++++++++..+.   .   ..+.         ..+++.+||+||
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            357999999987754  33334332  1   24999999998876443   1   1111         367899999999


Q ss_pred             Eeccc
Q psy13395        211 DKYQA  215 (224)
Q Consensus       211 ~~~~~  215 (224)
                      .+-+.
T Consensus        82 ~~~~~   86 (171)
T d1obba1          82 NTAMV   86 (171)
T ss_dssp             ECCCT
T ss_pred             eeccc
Confidence            88653

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.44  E-value=0.26  Score=37.92  Aligned_cols=62  Identities=11%  Similarity=0.095  Sum_probs=43.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhc-cCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGST-KKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~-~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++++|+|.|..|+.-.+.+.. |.  +..|+|...+.+..... ..--..+.+.++|||+....
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~-fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~P  107 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAA-FGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLP  107 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHT-TTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCC
T ss_pred             cceeeeeccccchhHHHHHHhhh-ccceEEeecCCCChhHHhhcCceeccHHHHHhhCCEEEEcCC
Confidence            57899999999999988887655 44  37888876654443321 11224567789999997643

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=89.42  E-value=0.18  Score=39.38  Aligned_cols=61  Identities=13%  Similarity=0.119  Sum_probs=41.1

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCCc--EEEeCCcchHHhhhhccCCCcccccccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLKL--KKYNRGLTEGTVTGSTKKGMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~i--~v~~R~~~~a~~~a~~~~g~~~~~v~~advvv~~~~  214 (224)
                      ..++|+|||.|.+|+.-.+.+.. |..  .+|+|.+.+.....-.. --..+-+.++|+|+-..-
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~-fg~~v~~~d~~~~~~~~~~~~~-~~l~~l~~~~D~v~~~~p  106 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKG-FGAKVIAYDPYPMKGDHPDFDY-VSLEDLFKQSDVIDLHVP  106 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCCSSCCTTCEE-CCHHHHHHHCSEEEECCC
T ss_pred             cceeeeeeecccccccccccccc-cceeeeccCCccchhhhcchhH-HHHHHHHHhcccceeeec
Confidence            45799999999999988888764 543  78888765432211111 114556678999987653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.01  E-value=0.37  Score=35.78  Aligned_cols=62  Identities=8%  Similarity=-0.003  Sum_probs=39.7

Q ss_pred             cEEEEEe-cCHhHHHHHHHHHHhCCc----EEEeCC--cchHH----hhhhcc--C------CCcccccccCcEEEEecc
Q psy13395        154 LVLAIMG-SGAQAYIHAKAFHASLKL----KKYNRG--LTEGT----VTGSTK--K------GMATEDVITAKLIYDKYQ  214 (224)
Q Consensus       154 ~~l~iiG-aG~QA~~hl~a~~~v~~i----~v~~R~--~~~a~----~~a~~~--~------g~~~~~v~~advvv~~~~  214 (224)
                      ..++||| +|..|..-...+.. .++    .+++..  +++++    +|.+..  .      .-..+++.+|||||-+-+
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~-~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG   79 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIAL-RDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAG   79 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHh-CCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEecc
Confidence            3689999 79999877666544 443    888854  33433    222210  0      015788999999998766


Q ss_pred             cc
Q psy13395        215 AQ  216 (224)
Q Consensus       215 ~~  216 (224)
                      ..
T Consensus        80 ~~   81 (142)
T d1o6za1          80 IP   81 (142)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.35  E-value=0.33  Score=37.45  Aligned_cols=62  Identities=15%  Similarity=0.161  Sum_probs=47.8

Q ss_pred             EEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhccC-----CC------------------cccccccCcEEE
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGSTKK-----GM------------------ATEDVITAKLIY  210 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~~~-----g~------------------~~~~v~~advvv  210 (224)
                      +++|||+|..|......|+..- .+..|+.++++.+.+.+...     +.                  ..+++..+|+|+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i~   81 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSF   81 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEE
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEEE
Confidence            5899999999999999988764 45999999998887765211     10                  356688999999


Q ss_pred             Eecccc
Q psy13395        211 DKYQAQ  216 (224)
Q Consensus       211 ~~~~~~  216 (224)
                      ......
T Consensus        82 i~VpTP   87 (202)
T d1mv8a2          82 ICVGTP   87 (202)
T ss_dssp             ECCCCC
T ss_pred             EecCcc
Confidence            887654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=87.83  E-value=1.2  Score=33.48  Aligned_cols=64  Identities=6%  Similarity=-0.076  Sum_probs=43.2

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhcc-----------CCCccc-----ccccCcEEEEec
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTK-----------KGMATE-----DVITAKLIYDKY  213 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~-----------~g~~~~-----~v~~advvv~~~  213 (224)
                      .-.+|+|+|+|..+...++.....-.  +.+.++++++. +++++.           ......     .=..+|+||..+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~-~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~  106 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCA  106 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH-HHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEec
Confidence            46889999999999999999887653  36778888764 333321           011010     113689999998


Q ss_pred             ccc
Q psy13395        214 QAQ  216 (224)
Q Consensus       214 ~~~  216 (224)
                      +..
T Consensus       107 G~~  109 (174)
T d1e3ia2         107 GTA  109 (174)
T ss_dssp             CCH
T ss_pred             ccc
Confidence            764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.81  E-value=0.32  Score=37.02  Aligned_cols=64  Identities=9%  Similarity=0.014  Sum_probs=45.7

Q ss_pred             EEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhccC----------------CC-----cccccccCcEEEEec
Q psy13395        155 VLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTKK----------------GM-----ATEDVITAKLIYDKY  213 (224)
Q Consensus       155 ~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~~----------------g~-----~~~~v~~advvv~~~  213 (224)
                      +++|||.|..|......+..-+++..|+.++++.+.+.+...                .+     ...++.++|+|+..|
T Consensus         2 kI~ViGlG~vGl~~a~~~a~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~v   81 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLSLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIAT   81 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEECC
T ss_pred             EEEEECCChhHHHHHHHHHCCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccccC
Confidence            589999999999887665432334889999888877764211                11     356678999999988


Q ss_pred             ccccc
Q psy13395        214 QAQHS  218 (224)
Q Consensus       214 ~~~~~  218 (224)
                      .....
T Consensus        82 pt~~~   86 (196)
T d1dlja2          82 PTNYN   86 (196)
T ss_dssp             CCCEE
T ss_pred             Ccccc
Confidence            76543

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=87.70  E-value=0.49  Score=36.11  Aligned_cols=63  Identities=16%  Similarity=0.077  Sum_probs=40.1

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCc---EEEeCCcchHHhhhhc-----------------cCCC-----cccccccCcE
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKL---KKYNRGLTEGTVTGST-----------------KKGM-----ATEDVITAKL  208 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i---~v~~R~~~~a~~~a~~-----------------~~g~-----~~~~v~~adv  208 (224)
                      .+++|-|.|.+||..+|++..--.+   .|-++++........+                 ..++     ..+...++||
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            4799999999999999988654334   5555554322111111                 0011     2344568999


Q ss_pred             EEEecccc
Q psy13395        209 IYDKYQAQ  216 (224)
Q Consensus       209 vv~~~~~~  216 (224)
                      |+.+|+..
T Consensus        82 ViEcTG~f   89 (171)
T d1cf2o1          82 VIDCTPEG   89 (171)
T ss_dssp             EEECCSTT
T ss_pred             EEEccCCC
Confidence            99999874

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.22  E-value=0.55  Score=34.21  Aligned_cols=62  Identities=5%  Similarity=-0.067  Sum_probs=45.9

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchHHhhhhc--cCCC-------------cccccccCcEEEEeccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEGTVTGST--KKGM-------------ATEDVITAKLIYDKYQA  215 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a~~~a~~--~~g~-------------~~~~v~~advvv~~~~~  215 (224)
                      .++.|+|.|..|+.-++.+...- ++.+...++++.....++  ..|+             ...-+.+||.||..|..
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~   81 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcccc
Confidence            47999999999999999987753 348888888775544432  1232             35667789999998864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=87.01  E-value=1  Score=32.94  Aligned_cols=65  Identities=12%  Similarity=0.087  Sum_probs=43.3

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhccC----CC-----cc----ccc-----ccCcEEEE
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGSTKK----GM-----AT----EDV-----ITAKLIYD  211 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~~~----g~-----~~----~~v-----~~advvv~  211 (224)
                      ...+++|+|+|.+|...++.+.. +.  +.++++++++.+...+-..    ..     ..    +.+     ..+|+||.
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~-~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid  104 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKA-YGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID  104 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             CCCEEEEEcccccchhhHhhHhh-hcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeee
Confidence            56789999999999999887655 44  3888999888654433110    00     11    111     35899999


Q ss_pred             eccccc
Q psy13395        212 KYQAQH  217 (224)
Q Consensus       212 ~~~~~~  217 (224)
                      .++...
T Consensus       105 ~~g~~~  110 (170)
T d1e3ja2         105 CSGNEK  110 (170)
T ss_dssp             CSCCHH
T ss_pred             cCCChH
Confidence            988653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=84.68  E-value=2.4  Score=31.51  Aligned_cols=66  Identities=9%  Similarity=-0.053  Sum_probs=44.5

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhh---c------cCCCccccc------ccCcEEEEecc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGS---T------KKGMATEDV------ITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~---~------~~g~~~~~v------~~advvv~~~~  214 (224)
                      .-.+|+|+|+|..+...++.+...-.  +.+.++++++.+.-.+   .      ...-..+++      ...|+||..++
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g  106 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  106 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCC
Confidence            46789999999999999999887754  4777888877543322   1      011111122      25899999888


Q ss_pred             ccc
Q psy13395        215 AQH  217 (224)
Q Consensus       215 ~~~  217 (224)
                      ..+
T Consensus       107 ~~~  109 (174)
T d1p0fa2         107 RIE  109 (174)
T ss_dssp             CHH
T ss_pred             Cch
Confidence            643

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.30  E-value=0.72  Score=34.22  Aligned_cols=65  Identities=9%  Similarity=0.092  Sum_probs=40.3

Q ss_pred             cEEEEEec-CHhHHHHHHHHHHh--CCc---EEEeCCcchHH--hhhhccC----CCcccccccCcEEEEecccccc
Q psy13395        154 LVLAIMGS-GAQAYIHAKAFHAS--LKL---KKYNRGLTEGT--VTGSTKK----GMATEDVITAKLIYDKYQAQHS  218 (224)
Q Consensus       154 ~~l~iiGa-G~QA~~hl~a~~~v--~~i---~v~~R~~~~a~--~~a~~~~----g~~~~~v~~advvv~~~~~~~~  218 (224)
                      ++++|+|+ |..|+.-++.+..-  +|+   +.+..+....+  .+.....    -...++..+.|+|+.++....+
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s   78 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYT   78 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHH
Confidence            47999998 99999999876654  454   33443332211  1222111    1144567899999999987654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.06  E-value=0.56  Score=35.42  Aligned_cols=62  Identities=15%  Similarity=0.197  Sum_probs=37.2

Q ss_pred             EEEEEecCHhHHH-HHHHHHH---hCC---cEEEeCCcch--HHhhhh--c----cCCC---------cccccccCcEEE
Q psy13395        155 VLAIMGSGAQAYI-HAKAFHA---SLK---LKKYNRGLTE--GTVTGS--T----KKGM---------ATEDVITAKLIY  210 (224)
Q Consensus       155 ~l~iiGaG~QA~~-hl~a~~~---v~~---i~v~~R~~~~--a~~~a~--~----~~g~---------~~~~v~~advvv  210 (224)
                      .++|||+|..+.. .+.++..   .++   +.++++++++  ++.+-.  +    ..+.         ..+++.+||+||
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvVv   82 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFVT   82 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEEE
Confidence            6899999954432 2222222   233   3889988754  443331  1    1122         367889999999


Q ss_pred             Eecccc
Q psy13395        211 DKYQAQ  216 (224)
Q Consensus       211 ~~~~~~  216 (224)
                      .+-+..
T Consensus        83 ~ta~~~   88 (169)
T d1s6ya1          83 TQFRVG   88 (169)
T ss_dssp             ECCCTT
T ss_pred             EccccC
Confidence            998753

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.84  E-value=0.32  Score=36.15  Aligned_cols=65  Identities=12%  Similarity=-0.006  Sum_probs=41.6

Q ss_pred             CCcEEEEEec-CHhHHHHHHHHHHh--CC----c--EEE--eCCcchHHhhhhcc--C-----------CCcccccccCc
Q psy13395        152 KDLVLAIMGS-GAQAYIHAKAFHAS--LK----L--KKY--NRGLTEGTVTGSTK--K-----------GMATEDVITAK  207 (224)
Q Consensus       152 ~~~~l~iiGa-G~QA~~hl~a~~~v--~~----i--~v~--~R~~~~a~~~a~~~--~-----------g~~~~~v~~ad  207 (224)
                      .+.+++|+|+ |..|......+..-  +.    +  .++  +++.++++..+...  .           .-..+++.+||
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad   82 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDAD   82 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccccc
Confidence            4679999996 99998877776542  21    2  333  34444444443211  1           11578999999


Q ss_pred             EEEEecccc
Q psy13395        208 LIYDKYQAQ  216 (224)
Q Consensus       208 vvv~~~~~~  216 (224)
                      |||.+.+..
T Consensus        83 vViitaG~~   91 (154)
T d1y7ta1          83 YALLVGAAP   91 (154)
T ss_dssp             EEEECCCCC
T ss_pred             EEEeecCcC
Confidence            999988754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=83.71  E-value=0.36  Score=34.35  Aligned_cols=63  Identities=8%  Similarity=0.059  Sum_probs=47.3

Q ss_pred             cEEEEEecCHhHHHHHHHHHHhCCcEEEeCCcchHHhhhhcc----CC-------CcccccccCcEEEEeccccc
Q psy13395        154 LVLAIMGSGAQAYIHAKAFHASLKLKKYNRGLTEGTVTGSTK----KG-------MATEDVITAKLIYDKYQAQH  217 (224)
Q Consensus       154 ~~l~iiGaG~QA~~hl~a~~~v~~i~v~~R~~~~a~~~a~~~----~g-------~~~~~v~~advvv~~~~~~~  217 (224)
                      +++.|+|.|..++.-++.+. -.++.+...++++.+.+....    .|       +....+.+|+.||..+....
T Consensus         1 kHivI~G~g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~   74 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR-GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDS   74 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC-GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHc-CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchh
Confidence            46899999999999999874 345688899999888776531    11       14566889999999886543

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.87  E-value=0.65  Score=34.46  Aligned_cols=63  Identities=13%  Similarity=0.073  Sum_probs=45.0

Q ss_pred             CCcEEEEEe-cCHhHHHHHHHHHHhCC-c--EEEeCCcchHHhhhhcc----CCC-----cccccccCcEEEEecc
Q psy13395        152 KDLVLAIMG-SGAQAYIHAKAFHASLK-L--KKYNRGLTEGTVTGSTK----KGM-----ATEDVITAKLIYDKYQ  214 (224)
Q Consensus       152 ~~~~l~iiG-aG~QA~~hl~a~~~v~~-i--~v~~R~~~~a~~~a~~~----~g~-----~~~~v~~advvv~~~~  214 (224)
                      |-.+|+|.| +|.+|+.-++.|+..-. +  ....|++++.+.+....    ..+     ..+++.+.|.||..-.
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEe
Confidence            678999999 79999999999987643 4  55678888877665421    111     3556677899886543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.55  E-value=1.7  Score=33.09  Aligned_cols=66  Identities=8%  Similarity=-0.053  Sum_probs=43.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC--cEEEeCCcchHHhhhhc--------cCCCccccc------ccCcEEEEeccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK--LKKYNRGLTEGTVTGST--------KKGMATEDV------ITAKLIYDKYQA  215 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~--i~v~~R~~~~a~~~a~~--------~~g~~~~~v------~~advvv~~~~~  215 (224)
                      .-.+|+|+|+|..+...+........  +.+.++++++.+...+.        ...-..+++      ..+|++|.+.+.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~  104 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  104 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECccc
Confidence            57799999999999888887665443  37778888775433221        011011222      258999999886


Q ss_pred             cc
Q psy13395        216 QH  217 (224)
Q Consensus       216 ~~  217 (224)
                      +-
T Consensus       105 ~~  106 (195)
T d1kola2         105 EA  106 (195)
T ss_dssp             TC
T ss_pred             cc
Confidence            53

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.47  E-value=1.4  Score=31.07  Aligned_cols=34  Identities=21%  Similarity=-0.064  Sum_probs=27.6

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGL  185 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~  185 (224)
                      -+++++|||.|..|..-...+.+.-. +.++.|..
T Consensus        21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            47899999999999999888877653 47777754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=80.85  E-value=2  Score=32.65  Aligned_cols=65  Identities=12%  Similarity=0.100  Sum_probs=44.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcchH-------------------Hhhhh--ccCCC--------ccc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLTEG-------------------TVTGS--TKKGM--------ATE  201 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~~a-------------------~~~a~--~~~g~--------~~~  201 (224)
                      .+++|+|||+|+-+..-...+...- .+.||.++++-.                   +.+.+  +..|+        ..+
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~~  121 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTAD  121 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEccc
Confidence            7899999999999988888765532 248888765321                   11111  11232        566


Q ss_pred             ccccCcEEEEecccc
Q psy13395        202 DVITAKLIYDKYQAQ  216 (224)
Q Consensus       202 ~v~~advvv~~~~~~  216 (224)
                      ...++|-||-+|++.
T Consensus       122 ~~~~~d~vilAtG~~  136 (179)
T d1ps9a3         122 QLQAFDETILASGIP  136 (179)
T ss_dssp             SSCCSSEEEECCCEE
T ss_pred             ccccceeEEEeecCC
Confidence            778999999999975

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.60  E-value=0.86  Score=33.65  Aligned_cols=64  Identities=6%  Similarity=-0.101  Sum_probs=43.0

Q ss_pred             CCcEEEEEec-CHhHHHHHHHHHH--hCC----c--EEEeCCc--chHHhhhhc--cCC-----------CcccccccCc
Q psy13395        152 KDLVLAIMGS-GAQAYIHAKAFHA--SLK----L--KKYNRGL--TEGTVTGST--KKG-----------MATEDVITAK  207 (224)
Q Consensus       152 ~~~~l~iiGa-G~QA~~hl~a~~~--v~~----i--~v~~R~~--~~a~~~a~~--~~g-----------~~~~~v~~ad  207 (224)
                      .+.+|+|||+ |..|+..+..+..  ++.    +  .+++.++  ++++.+...  ...           -..++..++|
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   81 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD   81 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence            4679999995 9999998887763  332    2  7776554  344554321  111           1468899999


Q ss_pred             EEEEeccc
Q psy13395        208 LIYDKYQA  215 (224)
Q Consensus       208 vvv~~~~~  215 (224)
                      |||.+-+.
T Consensus        82 vVVitag~   89 (154)
T d5mdha1          82 VAILVGSM   89 (154)
T ss_dssp             EEEECCSC
T ss_pred             EEEEeccc
Confidence            99998765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.45  E-value=2.1  Score=31.04  Aligned_cols=41  Identities=12%  Similarity=0.003  Sum_probs=31.0

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhCC-cEEEeCCcchHHhhh
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASLK-LKKYNRGLTEGTVTG  192 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~~-i~v~~R~~~~a~~~a  192 (224)
                      ...+++|+|+|..+...++.+...-. +.+.++++++.+...
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~   68 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR   68 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh
Confidence            57889999999999999988766532 366788887765443

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=80.37  E-value=1.2  Score=31.32  Aligned_cols=43  Identities=12%  Similarity=0.021  Sum_probs=33.7

Q ss_pred             CCcEEEEEecCHhHHHHHHHHHHhC-CcEEEeCCcc-hHHhhhhc
Q psy13395        152 KDLVLAIMGSGAQAYIHAKAFHASL-KLKKYNRGLT-EGTVTGST  194 (224)
Q Consensus       152 ~~~~l~iiGaG~QA~~hl~a~~~v~-~i~v~~R~~~-~a~~~a~~  194 (224)
                      +..+|+|+|.|-.|+....+...+- .+.+|+++++ .|..++++
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~va~~   54 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHR   54 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSE
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCchhhcCCe
Confidence            6789999999999999999876653 2399998876 45666653