Psyllid ID: psy13396

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHccHHHHHHHccccccccccccEEEEEEcccEEEEEcccccHHHHHHHHHHHccccEEEccEEccccccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEcHHHHcccHHHHHHHHHHHHHHcccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHccHHHHHHHHHHHccHHHHHHHHccccccccccEEEEEEEcccEEEEEEccccHHHHHHHHHHHcccEEEEEEEEccccHHccccccccccHEEEEEEEcccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEccHHHHcccHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHcHccccccccccEEcccccccc
Coil and Loop (DISEMBL)
madkydpesltemlpfyykrifpygpylrwlfygnldnfrkrefsftlngDIYARyisynspnelKKDLIKrcpqkidlgaiydicpkdhlqhsvftpKMKELVFDidmtdyddvrnccsgadicEKCWRYMSIACKILDTALREDFDFQLLLWVFsgrrgihcwvcDEAALALDGRGRSCLAEYMSVltanpvkkvfltgdvlhphlKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEwtrigpgqdveKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELayprldihvskgvnhllkspfcvhpktgkic
Flexible Loop (DISEMBL)
madkydpeslTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQEllstkerqtkvlglvsngdiraeiekewtrigpgqdvEKWDRLVAIIKhhqaknsdrklKYAIEEILLELAYPRLDIHVSKGVNHllkspfcvhpktgkic
Low Complexity Region (SEG)
MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFeklleeqellSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC
Disordered region (IsUnstruct)
**********TEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVH*******
Disordered Region (DISOPRED)
*********LTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDIC***********PKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANP***********HPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIR******************WDRLVAIIKH*****SDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI*
Disordered Region (DISEMBL)
********SLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC
Disordered Region (DISPRO)
****YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
Q24317	438	DNA primase small subunit	yes	N/A	0.978	0.732	0.476	4e-84
P20664	417	DNA primase small subunit	yes	N/A	0.978	0.769	0.463	7e-80
P49642	420	DNA primase small subunit	yes	N/A	0.984	0.769	0.462	9e-80
O14215	454	DNA primase small subunit	yes	N/A	0.969	0.700	0.425	6e-72
P34471	410	DNA primase small subunit	yes	N/A	0.969	0.775	0.383	1e-59
Q25998	452	DNA primase small subunit	N/A	N/A	0.951	0.690	0.369	7e-58
Q7KQM1	452	DNA primase small subunit	yes	N/A	0.951	0.690	0.369	7e-58
P10363	409	DNA primase small subunit	yes	N/A	0.960	0.770	0.363	2e-54
B1YAF6	312	Probable DNA primase smal	yes	N/A	0.545	0.573	0.279	4e-09
A3MUU9	312	Probable DNA primase smal	yes	N/A	0.478	0.503	0.279	2e-08

>sp|Q24317|PRI1_DROME DNA primase small subunit OS=Drosophila melanogaster GN=DNApol-alpha50 PE=2 SV=2

 Score =  311 bits (797), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 162/340 (47%), Positives = 221/340 (65%), Gaps = 19/340 (5%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           Y+PE L +MLP YY+R+FP+ P+ RWL YG+ ++  F  RE SFTL  DIY RY+ +++ 
Sbjct: 23  YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQ-HSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
            EL+K++  R P KID+G +    PK+H       TP  +ELVFDIDMTDYD+VR CCSG
Sbjct: 83  AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142

Query: 122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
           A +C KCW++M +A ++LD ALREDF F+ ++W+FSGRRGIHCWVCD  A  LDGRGR  
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYA 202

Query: 182 LAEYMSVLT----ANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           +AEY++++T    A         GD  H  LKRA  I+E  FE++ LE+Q L  T +  T
Sbjct: 203 VAEYLNIITYASFAGGNSPRCSMGDRPHHSLKRALKIVEPMFEEIVLEDQNLFGTPKGVT 262

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLV--AIIKHHQAKNS------DRKLKY 288
           K+L +V +   R E+E   + +    +     RLV  + IK+  +  +       RKLK 
Sbjct: 263 KLLNMVHDDAARGELE---SYMQKNLEDGAHSRLVWESFIKYANSMRTSTTSAWSRKLKN 319

Query: 289 AIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            + EI L L YPRLDI+V++G NHLLK+PFC+HP TGK+C
Sbjct: 320 IVAEIQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGKVC 359

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: -

>sp|P20664|PRI1_MOUSE DNA primase small subunit OS=Mus musculus GN=Prim1 PE=1 SV=1

 Score =  297 bits (761), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 153/330 (46%), Positives = 214/330 (64%), Gaps = 9/330 (2%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSP 62
           +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N+ 
Sbjct: 4   FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFNNQ 63

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           +EL+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct: 64  SELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 123

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct: 124 SADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 183

Query: 181 CLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKV 238
            + EY+S++     VKK     + +HP ++++  II+  FE+  L  Q++L  KE   K+
Sbjct: 184 GIVEYLSLVKGGQDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVGQDILENKENWDKI 243

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
           L LV    I  E+++ + +       ++W+ L  +    Q   +D+   +   E++L+  
Sbjct: 244 LALVPET-IHDELQRGFQKFHSSP--QRWEHLRKVANSSQNMKNDKCGPWLEWEVMLQYC 300

Query: 299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +PRLD++VSKGVNHLLKSPF VHPKTG+I 
Sbjct: 301 FPRLDVNVSKGVNHLLKSPFSVHPKTGRIS 330

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: -

>sp|P49642|PRI1_HUMAN DNA primase small subunit OS=Homo sapiens GN=PRIM1 PE=1 SV=1

 Score =  297 bits (760), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 154/333 (46%), Positives = 217/333 (65%), Gaps = 10/333 (3%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
           + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct: 2   ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct: 62  NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           CS ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct: 122 CSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query: 179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
           RS + EY+S++     VKK     + +HP ++++  II+  FE+  L  Q++L  KE   
Sbjct: 182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWD 241

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
           K+L LV    I  E+++ + +      +++W+ L  +   +Q    + K    +E EI+L
Sbjct: 242 KILALVPET-IHDELQQSFQK--SHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIML 298

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I 
Sbjct: 299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRIS 331

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: -

>sp|O14215|PRI1_SCHPO DNA primase small subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pri1 PE=1 SV=1

 Score =  271 bits (692), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 139/327 (42%), Positives = 206/327 (62%), Gaps = 9/327 (2%)

Query: 11  TEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
           +E +  YY+ +FP+    +WL +G +  ++F  REF+FTL  D Y RY+S+++  ELKK+
Sbjct: 32  SETMIQYYRHLFPWKYLFQWLNHGPVVTNDFAHREFAFTLPNDAYIRYLSFSNWEELKKE 91

Query: 69  LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
            +  CP + ++G +Y   P+D   ++ S F P  KELVFDIDMTDYDDVR CCS  +ICE
Sbjct: 92  ALNLCPSRFEVGPVYSANPRDRKTIRKSTFHPLKKELVFDIDMTDYDDVRTCCSKTNICE 151

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
           KCW +++IA ++LD    EDF F+ +LWV+SGRRGIH W+CDE A +LD R R  +A Y+
Sbjct: 152 KCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGIHAWICDEIACSLDDRSRRMIASYL 211

Query: 187 SVLTANPVKKVFLTGDV---LHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLV 242
            V+  NP   V L  ++   LHPHL R+  I++  F K+ LE+Q+  ++KE    +L L+
Sbjct: 212 QVVVGNPQGGVRLINNLKRPLHPHLTRSLNILKSAFVKIVLEDQDPWASKEGAENLLKLL 271

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQ-AKNSDRKLKYAIEEILLELAYPR 301
            + D+ + + K+W          KW  +  ++     A  S   +  A ++I+L   YPR
Sbjct: 272 PDKDLASALRKKWEVDPERSSKNKWSDIDTVLASGSIASISPSVIAIAKQDIVLTYLYPR 331

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           LD+ VS+ +NHLLKSPFCVHP T ++C
Sbjct: 332 LDVEVSRHLNHLLKSPFCVHPGTSRVC 358

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: -

>sp|P34471|PRI1_CAEEL DNA primase small subunit OS=Caenorhabditis elegans GN=pri-1 PE=3 SV=1

 Score =  230 bits (586), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/344 (38%), Positives = 196/344 (56%), Gaps = 26/344 (7%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSP 62
           Y+   L + LP YYK  FP  P+ +WL YG  N D F +REF+F L  D++ RY SYN  
Sbjct: 3   YNSIRLPQDLPIYYKNFFPVKPFTKWLRYGQNNGDYFNRREFAFILADDVHIRYRSYNDE 62

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGA 122
           +   K L    P+K+D+GA+Y+  P ++ +H+ +    +ELVFDID+TDYD VRNCC  A
Sbjct: 63  HAFFKALSSTNPEKLDIGAVYNHEPINNKRHTDYQAVERELVFDIDLTDYDPVRNCCKDA 122

Query: 123 DICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCL 182
            +C KCW++M +A KILD  L + FDF+  +WVFSGRRG+HCWV D+ A  L+   RS +
Sbjct: 123 TVCPKCWKFMVLAVKILDFQLEDMFDFKARMWVFSGRRGVHCWVGDKKARMLNNYQRSAI 182

Query: 183 AEYMSVLTAN---PVKKVFLTGDVLHPHLKRA-KLIIEDQ-FEKLLEEQELLSTKERQT- 236
           A  +++   N    V +       + P ++ A  + ++D  FEK++ +Q  L  ++  T 
Sbjct: 183 ATRLNLFKKNGQCEVTEGRAKMTKVPPIVRDAFNVALKDGVFEKMIYDQGWLDKEDFITE 242

Query: 237 -KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKN---SDRKLKYAIEE 292
            K +  V   D+R+  E   T        E+W+ +  +      K+    D  L + ++ 
Sbjct: 243 YKFMSEVGRDDLRSLSETYKT------PQERWNMIRGLFDDDYRKSLSPKDGLLDFKMQG 296

Query: 293 --------ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
                    +L+  YPRLD++VS G NHLLKSPFC+HPKTG + 
Sbjct: 297 RDRNYLLYFVLQRCYPRLDVNVSTGTNHLLKSPFCIHPKTGNVA 340

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: -

>sp|Q25998|PRI1_PLAFK DNA primase small subunit OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1

 Score =  224 bits (571), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 199/357 (55%), Gaps = 45/357 (12%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--------LDN---FRKREFSFTLNG------DIYARY 56
           L FYY+ + P      WL Y N        L++   F KREFSFT         +IY R+
Sbjct: 19  LIFYYRSLCPINDLYNWLNYKNDIKGKYTKLNDPHFFSKREFSFTCKKSDQGKEEIYIRW 78

Query: 57  ISYNSPNELKKDLIKR-CPQKIDLGAIYD--ICPKDHLQHSVFTPKMKELVFDIDMTDYD 113
           +S+++P E K  L+    P K D+GAIY+  +  KD  +  +F P  KEL+FDIDM DYD
Sbjct: 79  LSFSNPEEFKNKLLSDLVPIKFDIGAIYNFPVSQKDQ-KGDIFLPVQKELIFDIDMNDYD 137

Query: 114 DVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALA 173
           D+R CC+   +C+ CW+++++A  +LDTALREDF F+ +LWV+SGRRGIHCWV DE+   
Sbjct: 138 DIRTCCTDKKVCKLCWKFLTVAIVLLDTALREDFSFEHILWVYSGRRGIHCWVADESCRY 197

Query: 174 LDGRGRSCLAEYMSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLST 231
                R+ LA+Y+++L+ +    KKV + G   +P  +RA  I    F+ L+EEQ+    
Sbjct: 198 YTTDARAALADYLNILSGSDTKKKKVSIWGKDKYPMFERAFDICYKYFDVLMEEQDFF-- 255

Query: 232 KERQTKVLGLV-----SNGDIRAEIE-------KEWTRIGPGQDVEKWDRLVAIIKHHQA 279
           K+    V  L+     ++G +   ++       KE+         E +++  +I      
Sbjct: 256 KKGSPHVQKLIDYLPYASGKVTDPLKAMKLNELKEYINNNNFNSREIFEKFSSIYNFLTP 315

Query: 280 KNSDRKLKYA--------IEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            N  ++   +        ++EI+    YPRLDI+VSK +NHLLKSPFC+H  TG++C
Sbjct: 316 SNYFKRKNVSGNINMPSFVKEIVFHFTYPRLDINVSKEINHLLKSPFCIHNSTGRVC 372

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication.

Plasmodium falciparum (isolate K1 / Thailand) (taxid: 5839)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: -

>sp|Q7KQM1|PRI1_PLAF7 DNA primase small subunit OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0366 PE=3 SV=1

 Score =  224 bits (571), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 199/357 (55%), Gaps = 45/357 (12%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGN--------LDN---FRKREFSFTLNG------DIYARY 56
           L FYY+ + P      WL Y N        L++   F KREFSFT         +IY R+
Sbjct: 19  LIFYYRSLCPINDLYNWLNYKNDIKGKYTKLNDPHFFSKREFSFTCKKSDQGKEEIYIRW 78

Query: 57  ISYNSPNELKKDLIKR-CPQKIDLGAIYD--ICPKDHLQHSVFTPKMKELVFDIDMTDYD 113
           +S+++P E K  L+    P K D+GAIY+  +  KD  +  +F P  KEL+FDIDM DYD
Sbjct: 79  LSFSNPEEFKNKLLSDLVPIKFDIGAIYNFPVSQKDQ-KGDIFLPVQKELIFDIDMNDYD 137

Query: 114 DVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALA 173
           D+R CC+   +C+ CW+++++A  +LDTALREDF F+ +LWV+SGRRGIHCWV DE+   
Sbjct: 138 DIRTCCTDKKVCKLCWKFLTVAIVLLDTALREDFSFEHILWVYSGRRGIHCWVADESCRY 197

Query: 174 LDGRGRSCLAEYMSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLST 231
                R+ LA+Y+++L+ +    KKV + G   +P  +RA  I    F+ L+EEQ+    
Sbjct: 198 YTTDARAALADYLNILSGSDTKKKKVSIWGKDKYPMFERAFDICYKYFDVLMEEQDFF-- 255

Query: 232 KERQTKVLGLV-----SNGDIRAEIE-------KEWTRIGPGQDVEKWDRLVAIIKHHQA 279
           K+    V  L+     ++G +   ++       KE+         E +++  +I      
Sbjct: 256 KKGSPHVQKLIDYLPYASGKVTDPLKAMKLNELKEYINNNNFNSREIFEKFSSIYNFLTP 315

Query: 280 KNSDRKLKYA--------IEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            N  ++   +        ++EI+    YPRLDI+VSK +NHLLKSPFC+H  TG++C
Sbjct: 316 SNYFKRKNVSGNINMPSFVKEIVFHFTYPRLDINVSKEINHLLKSPFCIHNSTGRVC 372

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: -

>sp|P10363|PRI1_YEAST DNA primase small subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRI1 PE=1 SV=2

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 177/325 (54%), Gaps = 10/325 (3%)

Query: 14  LPFYYKRIFPYGPYLRWLFYGNLD--NFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
           + +YYK ++P+     WL +      +   REF+       Y RY S+NS  + K  + K
Sbjct: 15  MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEK 74

Query: 72  RCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
             P + ++GAIY+  P+  D L  S      KELVFDIDM DYD  R CCSGA +C KCW
Sbjct: 75  ANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCW 134

Query: 130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
           +++S+A KI +TALREDF ++  +WVFSGRRG HCWV D+ A AL    R  + +Y++V+
Sbjct: 135 KFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVI 194

Query: 190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK-VLGLVSNGDI 247
                 K        HPHL R+   ++  F   +LEEQ      +   + +L  + +  +
Sbjct: 195 RDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLLPALYDKQL 254

Query: 248 RAEIEKEWTRIGPGQDVEKWDRL----VAIIKHHQAKNSDRKLKYAIEEILLELAYPRLD 303
              ++K W         EKW+ +     ++ K  +  +   KL+   E+++L   YP+LD
Sbjct: 255 IDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYPKLD 314

Query: 304 IHVSKGVNHLLKSPFCVHPKTGKIC 328
           + V+K   HLLK+PFC+HP TG +C
Sbjct: 315 VEVTKQTIHLLKAPFCIHPATGNVC 339

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication. In a complex with DNA polymerase alpha (DNA polymerase alpha:primase) constitutes a replicative polymerase. Both primase components participate in formation of the active center, but the ATP-binding site is exclusively located on p48.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: -

>sp|B1YAF6|PRIS_PYRNV Probable DNA primase small subunit OS=Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta) GN=priA PE=3 SV=1

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 14/193 (7%)

Query: 35  NLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKI-DLGAIYDICPKDHLQH 93
           ++D   KREF+F   G    R+ ++ S  EL++  +++ P+ +    A Y+   +  ++ 
Sbjct: 18  DVDAVEKREFAFQPFGGGMVRHKAFKSVEELRRFAVEKTPRHMYHSSAYYERPDEGDMER 77

Query: 94  SVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWR-YMSIACKILDTALREDFDFQLL 152
             +     +L+FDID  D+ D   C     +   C       A K+LD   RE    +  
Sbjct: 78  KGWLGA--DLIFDID-GDHLDTEACRESKLVSIACLNDAREEANKLLDVLTRE-LGLKPR 133

Query: 153 LWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPV--------KKVFLTGDVL 204
             VFSG RG H  V DE  LAL  R R  L  Y+     +P         +KV L  + +
Sbjct: 134 RIVFSGNRGFHVHVADEEVLALGARERRELVNYLKAAGFDPTRFAAKLGRRKVLLYEEEV 193

Query: 205 HPHLKRAKLIIED 217
             +L R +  +ED
Sbjct: 194 EGNLLRIRQGVED 206

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis.

Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) (taxid: 444157)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: -

>sp|A3MUU9|PRIS_PYRCJ Probable DNA primase small subunit OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=priA PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 4/161 (2%)

Query: 36  LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLG-AIYDICPKDHLQHS 94
           +D   KREF+F        R+ ++ +  ELK+ L+++ P+ +    A Y+   ++ ++  
Sbjct: 19  VDEVEKREFAFQPFVGGMVRHKAFKNLEELKRHLVEKTPRHVYYSTARYERPWEEDMERK 78

Query: 95  VFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLW 154
            +     +LVFDID  D+ D   C     +   C          L   L E+   +    
Sbjct: 79  GWLGA--DLVFDID-GDHLDTEACRESKVVSLACLEDAKEEANKLIDVLTEELGLKPTKV 135

Query: 155 VFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVK 195
           VFSG RG H  V DE  LAL  + R  L  Y+  +  +P K
Sbjct: 136 VFSGNRGFHVHVVDEEVLALGQKERRELVNYLKAVGFDPSK 176

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis.

Pyrobaculum calidifontis (strain JCM 11548 / VA1) (taxid: 410359)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
321477962	406	hypothetical protein DAPPUDRAFT_206450 [	0.966	0.780	0.533	7e-93
340724314	415	PREDICTED: DNA primase small subunit-lik	0.978	0.773	0.512	3e-91
390334961	428	PREDICTED: DNA primase small subunit-lik	0.972	0.745	0.525	4e-91
170028027	429	DNA primase small subunit [Culex quinque	0.990	0.757	0.488	5e-91
350397738	415	PREDICTED: DNA primase small subunit-lik	0.978	0.773	0.506	1e-90
198436190	436	PREDICTED: similar to DNA primase small	0.978	0.736	0.501	3e-90
196006934	400	hypothetical protein TRIADDRAFT_26575 [T	0.996	0.817	0.494	5e-90
157104474	428	DNA primase [Aedes aegypti] gi|108869184	0.981	0.752	0.491	5e-90
332021893	447	DNA primase small subunit [Acromyrmex ec	0.975	0.715	0.516	2e-89
345497273	413	PREDICTED: DNA primase small subunit-lik	0.975	0.774	0.493	3e-89

>gi|321477962|gb|EFX88920.1| hypothetical protein DAPPUDRAFT_206450 [Daphnia pulex]

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 174/326 (53%), Positives = 226/326 (69%), Gaps = 9/326 (2%)

Query: 8   ESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSPNEL 65
           E   E +  YYKR+FPYGPY RWL YGN+    F  REFSFTL  DIY RY S+   +EL
Sbjct: 3   EQNEEAMLTYYKRLFPYGPYFRWLNYGNMKEHYFHNREFSFTLPDDIYIRYQSFKDQDEL 62

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           ++++ K  PQKIDLGA+Y+  PK+H   S F P  KELVFDIDMTDYDDVRNCC GADIC
Sbjct: 63  EEEMKKMKPQKIDLGAVYNHRPKNHRSISHFIPMEKELVFDIDMTDYDDVRNCCQGADIC 122

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
           +KCW++M +A K+LD ALR+DF +Q LLWVFSGRRG+HCWVCD+AA ALD   RS +AEY
Sbjct: 123 DKCWKFMVVAIKVLDAALRDDFGYQHLLWVFSGRRGVHCWVCDDAARALDQSARSAVAEY 182

Query: 186 MSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKLL-EEQELLSTKERQTKVLGLV 242
           + ++       KKV    + LHP + RA  I+ED FE ++ ++Q++L ++E   K L ++
Sbjct: 183 LQIIKGGEQQNKKVSFNYEHLHPAVSRAARIVEDHFESMMVKDQDILGSEEAIKKFLTMI 242

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRL 302
           S+  +R  +EK  + +       +W R+   +     KN  R+L +  EEI+L+L YPRL
Sbjct: 243 SDEKLRNTLEK--SMLSYHDSASRW-RVFEELTASTNKNK-RQLSHLKEEIMLQLTYPRL 298

Query: 303 DIHVSKGVNHLLKSPFCVHPKTGKIC 328
           DI+VSK +NHLLKSPFCVHPKTGKIC
Sbjct: 299 DINVSKQLNHLLKSPFCVHPKTGKIC 324

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724314|ref|XP_003400527.1| PREDICTED: DNA primase small subunit-like [Bombus terrestris]

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 168/328 (51%), Positives = 227/328 (69%), Gaps = 7/328 (2%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           D  +L +MLP YY R+FP+  Y RWL YGN++ F  REFSFTL GDIY R+ S+ S  EL
Sbjct: 3   DVANLADMLPTYYTRLFPFHDYYRWLSYGNVNVFTHREFSFTLQGDIYLRFQSFKSAKEL 62

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           + ++ +  P KID+GA+Y++ PKD  + + F P  +ELVFDIDMTDYDDVR CCSGADIC
Sbjct: 63  EYEIKRLLPFKIDIGAVYNLSPKDQRKGTNFHPVERELVFDIDMTDYDDVRTCCSGADIC 122

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW++M++ACKILD+ALR DF ++ +LWVFSGRRGIHCWVCD +A +L    R  +AEY
Sbjct: 123 CKCWKFMALACKILDSALRLDFGYKHILWVFSGRRGIHCWVCDPSARSLTATERGAVAEY 182

Query: 186 MSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLV 242
           + ++       KKV L GD +H  +KRA  +IE  F    +EEQ +L T E   K L ++
Sbjct: 183 LQIVEGGEYMKKKVNLPGDRIHHSIKRALEMIEAVFVPFCIEEQNILGTDEGMEKFLQII 242

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDR--KLKYAIEEILLELAYP 300
           S+ + R E++  + +    +D  +WD  V  +K+ +     +  + ++ IEE++L+ AYP
Sbjct: 243 SDDEDRQELKAFFGQCSSSKD--RWDSFVKYVKNKKTTGDKKWYQYRHLIEEVMLQYAYP 300

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           RLDI VSKG+NHLLKSPFCVHPKTGKIC
Sbjct: 301 RLDIAVSKGLNHLLKSPFCVHPKTGKIC 328

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390334961|ref|XP_791278.3| PREDICTED: DNA primase small subunit-like [Strongylocentrotus purpuratus]

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 174/331 (52%), Positives = 224/331 (67%), Gaps = 12/331 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
           Y P++L E+LP YYKR+FP+GPY RWL YG      F  REFSFTL  DIY RY S++  
Sbjct: 14  YSPDTLPELLPVYYKRLFPFGPYYRWLNYGGAPKSYFLNREFSFTLENDIYIRYQSFSDQ 73

Query: 63  NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           NE++K++ KRCP KID+GA++   PKDH  L+ + F  + KELVFDIDMTDYDDVR+CC 
Sbjct: 74  NEMEKEIQKRCPYKIDIGAVFTHKPKDHRTLKAAAFQAQEKELVFDIDMTDYDDVRSCCQ 133

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
           GADIC KCW  M+IA KI+D+AL EDF F+  LWV+SGRRG+HCWVCDEAA  L    RS
Sbjct: 134 GADICSKCWPLMTIAIKIVDSALYEDFGFEHRLWVYSGRRGVHCWVCDEAARKLSQNARS 193

Query: 181 CLAEYMSVLTA--NPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK 237
            +AEY+S++    N VKKV L  D LHP ++RAK +I   FE   L +Q++L  KE   K
Sbjct: 194 AIAEYLSIVKGGENQVKKVSLP-DQLHPSVERAKQVIVSYFEDYALNKQDILGDKESWKK 252

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLEL 297
           VL LV   D +  +E + T+      +E+W  L   +    +    ++    + EI  + 
Sbjct: 253 VLALVP--DDKGHLENDMTK--GSNSLERWKLLRERVSREVSVGRAKRCGQLVAEIAFQY 308

Query: 298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            YPRLD++VSKGVNHLLKSPFCVHPKTG++C
Sbjct: 309 CYPRLDVNVSKGVNHLLKSPFCVHPKTGRVC 339

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|170028027|ref|XP_001841898.1| DNA primase small subunit [Culex quinquefasciatus] gi|167868368|gb|EDS31751.1| DNA primase small subunit [Culex quinquefasciatus]

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 163/334 (48%), Positives = 230/334 (68%), Gaps = 9/334 (2%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYN 60
           DK+DP SL ++LP YY+R+FP+  + RW+ YG      F  REFSFTL  DIY RY S+ 
Sbjct: 13  DKFDPASLNDLLPLYYRRLFPHLQFYRWMSYGLSEPSVFTNREFSFTLQDDIYIRYQSFE 72

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           + +EL+K++  + P KID+GA++++ PKDH   +V  P  +ELVFDIDMTDYD++R CCS
Sbjct: 73  NQSELEKEICAKNPSKIDIGAVFNVRPKDHRASTVMKPVQRELVFDIDMTDYDEIRTCCS 132

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            A++C KCW++M+IACKI+D ALREDF F+ LLWVFSGRRGIHCW+ D+ A  LD RGR+
Sbjct: 133 EANVCPKCWKFMTIACKIIDAALREDFGFEHLLWVFSGRRGIHCWISDKVARYLDTRGRA 192

Query: 181 CLAEYMSVLTA---NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
            +AEY+++L +     V KV +  D +H  +KRA  IIE  FE++ L +Q++  T     
Sbjct: 193 AVAEYLNILISGGEGTVTKVNINTDRMHHAVKRAHRIIEPYFEEICLVDQDMFGTPNGLR 252

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQ--AKNSDRKLKYAIEEIL 294
           K+L +V +   R +++K+  +   G     W   V   +  +   KN +RKL++ +EE+ 
Sbjct: 253 KLLAMVQDDGARMDLDKKL-KPHEGDSKAIWKAFVNFFEARRITGKNRNRKLRHVVEEVQ 311

Query: 295 LELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           L + YPR+DI+VSKG NHLLK+PFCVHPKTGK+C
Sbjct: 312 LAVTYPRIDINVSKGFNHLLKAPFCVHPKTGKVC 345

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397738|ref|XP_003484976.1| PREDICTED: DNA primase small subunit-like [Bombus impatiens]

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 166/328 (50%), Positives = 227/328 (69%), Gaps = 7/328 (2%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           D  +L ++LP YY R+FP+  Y RWL YGN++ F  REFSFTL GDIY R+ S+ S  EL
Sbjct: 3   DVANLADLLPTYYTRLFPFHDYYRWLSYGNVNVFTHREFSFTLQGDIYLRFQSFKSAKEL 62

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           + ++ +  P KID+GA+Y++ PKD  + + F P  +ELVFDIDMTDYDDVR CCSGADIC
Sbjct: 63  EYEIKRLLPIKIDIGAVYNLSPKDQRKGTNFHPVERELVFDIDMTDYDDVRTCCSGADIC 122

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW++M++ACKILD+ALR DF ++ +LW+FSGRRGIHCWVCD +A +L    R  +AEY
Sbjct: 123 YKCWKFMALACKILDSALRLDFGYKHILWIFSGRRGIHCWVCDPSARSLTAIERGAVAEY 182

Query: 186 MSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLV 242
           + ++       KKV L GD +H  +KRA  +IE  F    +EEQ +L T E   K L ++
Sbjct: 183 LQIVEGGEYMKKKVNLPGDRIHHSVKRALEMIEAVFVPFCIEEQNILGTDEGMEKFLQII 242

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDR--KLKYAIEEILLELAYP 300
           S+ + R E++  + +    +D  +WD  V  +K+ +     +  + ++ IEE++L+ AYP
Sbjct: 243 SDDEDRQELKAFFGQCSSSKD--RWDSFVKYVKNKKTTGDKKWYQYRHLIEEVMLQYAYP 300

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           RLDI VSKG+NHLLKSPFCVHPKTGKIC
Sbjct: 301 RLDIAVSKGLNHLLKSPFCVHPKTGKIC 328

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198436190|ref|XP_002129877.1| PREDICTED: similar to DNA primase small subunit (DNA primase 49 kDa subunit) (p49) [Ciona intestinalis]

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 167/333 (50%), Positives = 219/333 (65%), Gaps = 12/333 (3%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN----FRKREFSFTLNGDIYARYISYN 60
           YDP SL  +LP YY  IFPYGPY +WLFYG+       F KREFSFTL  DIY RY S+ 
Sbjct: 12  YDPNSLPSLLPIYYNYIFPYGPYCKWLFYGSKTGSGSLFEKREFSFTLQNDIYVRYQSFA 71

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPK--DHLQHSVFTPKMKELVFDIDMTDYDDVRNC 118
           S  E +K+L K  P KID+GAIY   PK  + +    F P  KELVFDIDMTDYDDVR C
Sbjct: 72  SEAEFRKELKKMNPYKIDIGAIYSAPPKHRNRVSGGSFKPLTKELVFDIDMTDYDDVRKC 131

Query: 119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
           C GADIC+KCW  MSIA KIL+ AL++DF F+ LLWV+SGRRG+HCWVCDE A +L    
Sbjct: 132 CQGADICKKCWTLMSIAIKILNRALKDDFGFKHLLWVYSGRRGVHCWVCDEKARSLSAHA 191

Query: 179 RSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTKERQTK 237
           RS + EY+S++ A   +K     D +HP+++    +I   ++K  +E+Q  L   +   K
Sbjct: 192 RSSIVEYLSLIQAGNHEKRVTLRDPVHPYIRNCHQVIRSYWDKYAIEDQGFLDEDKDVAK 251

Query: 238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRL--VAIIKHHQAKNSDRKLKYAIEEILL 295
           VL L+S+ D+R ++EK++         E+W +L       +      +RKL+Y   EI++
Sbjct: 252 VLKLISDLDVREKVEKQF---AGKNSAERWKKLRETCTSTYESDPKRNRKLRYTSHEIMM 308

Query: 296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           E  +PRLD++VSKG+NHLLKSPFCVHPKTG++C
Sbjct: 309 EFCFPRLDVNVSKGINHLLKSPFCVHPKTGRVC 341

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|196006934|ref|XP_002113333.1| hypothetical protein TRIADDRAFT_26575 [Trichoplax adhaerens] gi|190583737|gb|EDV23807.1| hypothetical protein TRIADDRAFT_26575 [Trichoplax adhaerens]

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 170/344 (49%), Positives = 229/344 (66%), Gaps = 17/344 (4%)

Query: 1   MADKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYIS 58
           ++ KYD   L +++  YYKR+FPY  Y +WL YGN+    F  REFSFTL  DIY RY+S
Sbjct: 11  LSVKYDLTDLPQLMAVYYKRLFPYQLYYKWLSYGNVSKNYFANREFSFTLKDDIYVRYLS 70

Query: 59  YNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVR 116
           ++  NE++K++ KR P KIDLGA+Y   PKD   +++S F P+ KELVFDIDMTDYD++R
Sbjct: 71  FSDKNEMQKEIQKRSPYKIDLGAVYSFRPKDRNMIKNSSFQPEEKELVFDIDMTDYDEIR 130

Query: 117 NCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDG 176
           +CCSGA+IC KCW +M++A KILD ALREDF F  LLWV+SGRRGIHCWVCD AA  L  
Sbjct: 131 SCCSGAEICSKCWPFMTVAMKILDAALREDFGFHHLLWVYSGRRGIHCWVCDAAARKLSQ 190

Query: 177 RGRSCLAEYMSVLTANP--VKKV-FLTGDVLHPHLKRAKLIIEDQFEK-LLEEQELLSTK 232
             RS +AEY++++      VK+V F     LHP ++RA   IE  FE  LL++Q +L ++
Sbjct: 191 SARSAIAEYLTIIKGGEGHVKRVHFKNQAYLHPSIQRALKTIESYFEDLLLKKQNILESE 250

Query: 233 ERQTKVLGLVSNGDIRAE--------IEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDR 284
           E   KVL L+ + +I  +        + +EW   G    ++KW  L   I+       + 
Sbjct: 251 ESSNKVLALIPDKNILKDQIRFYFFSLSEEWNNSGLSS-LQKWSLLKQKIEKDIVSTKNS 309

Query: 285 KLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            L + + EI L+  YPRLDI+VSKG+NHLLKSPFC+HPKTG++C
Sbjct: 310 VLTHCVAEIQLQYTYPRLDINVSKGINHLLKSPFCIHPKTGRVC 353

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|157104474|ref|XP_001648424.1| DNA primase [Aedes aegypti] gi|108869184|gb|EAT33409.1| AAEL014314-PA [Aedes aegypti]

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 165/336 (49%), Positives = 231/336 (68%), Gaps = 14/336 (4%)

Query: 3   DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYN 60
           +K++PES+ ++LP YYKR+FP+  + RW+ YG      F  REFSFTL  DIY RY S+ 
Sbjct: 13  EKFNPESMQDLLPIYYKRLFPHMQFYRWMSYGLSEPSVFTNREFSFTLQDDIYIRYQSFE 72

Query: 61  SPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
           + +EL+K++  + P KID+GA+Y++ PKDH   +V  P  +ELVFDIDMTDYD++R CC+
Sbjct: 73  NQSELEKEICSKNPFKIDIGAVYNVRPKDHRASTVMKPVQRELVFDIDMTDYDEIRTCCN 132

Query: 121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
            A++C KCW++M+IACKI+D ALREDF F+ LLWVFSGRRGIHCWVCD++A  LD +GRS
Sbjct: 133 EANVCTKCWKFMTIACKIIDAALREDFGFEHLLWVFSGRRGIHCWVCDKSARHLDSKGRS 192

Query: 181 CLAEYMSVLTA---NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQT 236
            +AEY+ +L +     V +V L GD +H  +KRA  IIE  FE++ L EQ +  T +   
Sbjct: 193 SVAEYLHILISGGEGSVTRVTL-GDRMHHSIKRAHKIIEPFFEEICLVEQNMFGTPDGLR 251

Query: 237 KVLGLVSNGDIRAEIEKEWTRIGP--GQDVEKWDRLVAIIKHHQ--AKNSDRKLKYAIEE 292
           K+L +V +  +R ++++   ++ P  G     W    A  +  +   +N  R+ K+ IEE
Sbjct: 252 KLLAMVQDEGVRLDLDR---KLKPHVGNSKALWKAFEAFFESLRVSGQNKGRRFKHIIEE 308

Query: 293 ILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             L   YPR+DI+VSKG NHLLK+PFCVHPKTGK+C
Sbjct: 309 TQLAFTYPRIDINVSKGFNHLLKAPFCVHPKTGKVC 344

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021893|gb|EGI62229.1| DNA primase small subunit [Acromyrmex echinatior]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 170/329 (51%), Positives = 224/329 (68%), Gaps = 9/329 (2%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           D   L ++LP YY R+FP+  Y RWL YGN   F KREFSFTL+ DIY RY S+N    L
Sbjct: 3   DVSDLLDLLPVYYSRLFPFADYHRWLSYGNAVTFSKREFSFTLSNDIYIRYQSFNDQKGL 62

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
             ++ +  P KID+GA+Y++ PKD  +   F P  +ELVFDIDMTDYD+VR CC GADIC
Sbjct: 63  SDEIKRMLPHKIDIGAVYNVQPKDQRRGPNFQPVERELVFDIDMTDYDEVRTCCKGADIC 122

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW++MS+ACKILD+ALR DF ++ LLW+FSGRRGIHCWVCD AA +L G+ R+ +AEY
Sbjct: 123 GKCWKFMSLACKILDSALRLDFGYKHLLWIFSGRRGIHCWVCDPAARSLSGQVRAAVAEY 182

Query: 186 MSVLTANPV--KKVFLTGDVLHPHLKRAKLIIEDQF-EKLLEEQELLSTKERQTKVLGLV 242
           + ++       KKV LTGD +H  +KRA  II+  F E  ++EQ +L T+E   K L ++
Sbjct: 183 LQIIGGGEFMKKKVHLTGDKIHHSVKRALDIIDPVFVEMCVKEQNMLGTEEGIEKFLPIL 242

Query: 243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRK---LKYAIEEILLELAY 299
            N + R EI+  + +    +   +W+  +  I   +    DRK    ++ IEEI L+ +Y
Sbjct: 243 PNDEDRQEIKVLFDKESTSE--ARWNTFLQYIVSKRT-GGDRKWYLYRHLIEEIKLQYSY 299

Query: 300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
           PRLDI+VSKG+NHLLKSPFCVHPKTGKIC
Sbjct: 300 PRLDINVSKGLNHLLKSPFCVHPKTGKIC 328

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345497273|ref|XP_001601538.2| PREDICTED: DNA primase small subunit-like [Nasonia vitripennis]

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 161/326 (49%), Positives = 221/326 (67%), Gaps = 6/326 (1%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGDIYARYISYNSPNEL 65
           D  +L+++LP YY R+FPY  Y RWL YG    F +REFSFTL  DIY R+ S+N  ++L
Sbjct: 2   DESNLSDLLPLYYSRLFPYIDYYRWLSYGEASTFSRREFSFTLRDDIYIRFQSFNKIDDL 61

Query: 66  KKDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADIC 125
           K ++ + CP KID+GA+Y++ P +  +   F P  +E+V DIDMTDYD+VR+CCSGAD+C
Sbjct: 62  KNEIKRLCPHKIDIGAVYNVAPSNKGREIKFEPIQREVVIDIDMTDYDEVRSCCSGADVC 121

Query: 126 EKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEY 185
            KCW+YM +A KILD ALR+DF F  +LWVFSGRRGIHCWVCD+ A  L   GR  +A Y
Sbjct: 122 NKCWKYMVLAVKILDVALRDDFGFDHILWVFSGRRGIHCWVCDKKARFLTQNGRKAVAHY 181

Query: 186 MSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFEKL-LEEQELLSTKERQTKVLGLVS 243
           + +++     KK       +H  +KRA  IIE  F K+ +EEQ +L T+ER TK LG+++
Sbjct: 182 LQLISGGEFTKKKVKLNRKMHYSVKRAVSIIEPYFTKMCMEEQNMLGTEERITKFLGILA 241

Query: 244 NGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSD--RKLKYAIEEILLELAYPR 301
             D+R E++  + +      V+KW+  V   +      S   R+  + IEEI+++ AYPR
Sbjct: 242 EEDLRNEVKAIFDK--HSTSVKKWEAFVNHFREQTQSGSKKWRRTPHLIEEIIIQYAYPR 299

Query: 302 LDIHVSKGVNHLLKSPFCVHPKTGKI 327
           LDI+V+KG+NHLLKSPFCVHPKTGK+
Sbjct: 300 LDINVTKGMNHLLKSPFCVHPKTGKV 325

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
ZFIN|ZDB-GENE-990603-6	425	prim1 "primase polypeptide 1"	0.969	0.748	0.487	8.5e-81
FB|FBgn0011762	438	DNApol-alpha50 "DNA polymerase	0.987	0.739	0.456	3.1e-76
UNIPROTKB|G8JKZ3	418	PRIM1 "DNA primase" [Bos tauru	0.981	0.770	0.460	3.1e-76
UNIPROTKB|P49642	420	PRIM1 "DNA primase small subun	0.975	0.761	0.455	5.7e-75
MGI|MGI:97757	417	Prim1 "DNA primase, p49 subuni	0.981	0.772	0.450	1.2e-74
UNIPROTKB|I3LGL1	385	LOC100622817 "DNA primase" [Su	0.981	0.836	0.451	4e-74
UNIPROTKB|F8VNY2	328	PRIM1 "DNA primase" [Homo sapi	0.960	0.960	0.448	3.2e-72
UNIPROTKB|F1LQA1	417	Prim1 "DNA primase" [Rattus no	0.975	0.767	0.446	2.3e-71
POMBASE|SPAC6B12.10c	454	spp1 "DNA primase catalytic su	0.966	0.698	0.414	6.3e-69
CGD|CAL0004759	452	orf19.4030 [Candida albicans (	0.960	0.696	0.382	1.8e-62

ZFIN|ZDB-GENE-990603-6 prim1 "primase polypeptide 1" [Danio rerio (taxid:7955)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 161/330 (48%), Positives = 217/330 (65%)

Query:     5 YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
             YD   L ++LP YY+R+FP+  Y RWL YG +    F+ REFSFTL  DIY RY S++S 
Sbjct:     6 YDSACLPDLLPLYYRRLFPFSQYFRWLSYGGVSKNYFQNREFSFTLKDDIYVRYQSFSSQ 65

Query:    63 NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
             NEL+K++ K  P KID+GA+Y   P  H  ++   F    KELVFDIDMTDYDDVR CCS
Sbjct:    66 NELEKEMQKMVPYKIDIGAVYSHRPSQHNTVKSGTFQALEKELVFDIDMTDYDDVRRCCS 125

Query:   121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
              ADIC KCW  M+IA +ILD ALREDF F  LLWV+SGRRG+HCWVCD+AA  L    RS
Sbjct:   126 AADICSKCWTLMTIAIRILDRALREDFGFHHLLWVYSGRRGVHCWVCDDAARKLSVAARS 185

Query:   181 CLAEYMSVLTANP--VKKVFLTGDVLHPHLKRAKLIIEDQF-XXXXXXXXXXSTKERQTK 237
              +AEY+S++      ++KV L+ D +HP + R+  ++E  F             KE   K
Sbjct:   186 AVAEYLSLVKGGEETLRKVVLS-DPIHPFISRSLSVVEHYFPQYAIVDQDILGNKESVDK 244

Query:   238 VLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLEL 297
             VL L+   DI+ ++ + +      + +++WDRL  ++ H ++ +S +  +Y  +EI+L+ 
Sbjct:   245 VLALLPE-DIKKDLIEYYQN--HKEPMKRWDRLRQLVDHKKS-SSKKGGQYYDKEIMLQY 300

Query:   298 AYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
              YPRLD++VSKGVNHLLKSPF VHPKTG+I
Sbjct:   301 CYPRLDVNVSKGVNHLLKSPFSVHPKTGRI 330

GO:0003896 "DNA primase activity" evidence=IEA

GO:0006269 "DNA replication, synthesis of RNA primer" evidence=IEA

GO:0030894 "replisome" evidence=IEA

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

FB|FBgn0011762 DNApol-alpha50 "DNA polymerase alpha 50kD" [Drosophila melanogaster (taxid:7227)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 154/337 (45%), Positives = 209/337 (62%)

Query:     5 YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
             Y+PE L +MLP YY+R+FP+ P+ RWL YG+ ++  F  RE SFTL  DIY RY+ +++ 
Sbjct:    23 YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82

Query:    63 NELKKDLIKRCPQKIDLGAIYDICPKDHLQ-HSVFTPKMKELVFDIDMTDYDDVRNCCSG 121
              EL+K++  R P KID+G +    PK+H       TP  +ELVFDIDMTDYD+VR CCSG
Sbjct:    83 AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142

Query:   122 ADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSC 181
             A +C KCW++M +A ++LD ALREDF F+ ++W+FSGRRGIHCWVCD  A  LDGRGR  
Sbjct:   143 AGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYA 202

Query:   182 LAEYMSVLT----ANPVKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQT 236
             +AEY++++T    A         GD  H  LKRA  I+E  F            T +  T
Sbjct:   203 VAEYLNIITYASFAGGNSPRCSMGDRPHHSLKRALKIVEPMFEEIVLEDQNLFGTPKGVT 262

Query:   237 KVLGLVSNGDIRAEIEKEWTR-IGPGQDVEK-WDRLVAIIKHHQAKNSD---RKLKYAIE 291
             K+L +V +   R E+E    + +  G      W+  +      +   +    RKLK  + 
Sbjct:   263 KLLNMVHDDAARGELESYMQKNLEDGAHSRLVWESFIKYANSMRTSTTSAWSRKLKNIVA 322

Query:   292 EILLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             EI L L YPRLDI+V++G NHLLK+PFC+HP TGK+C
Sbjct:   323 EIQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGKVC 359

GO:0005658 "alpha DNA polymerase:primase complex" evidence=ISS;NAS;IDA

GO:0006260 "DNA replication" evidence=NAS;IDA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS;NAS

GO:0006269 "DNA replication, synthesis of RNA primer" evidence=IEA;ISS

GO:0003896 "DNA primase activity" evidence=IEA;NAS

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|G8JKZ3 PRIM1 "DNA primase" [Bos taurus (taxid:9913)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 153/332 (46%), Positives = 211/332 (63%)

Query:     3 DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
             + +DP  L E+L  YY+R+FPYG Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct:     2 EAFDPAELPELLKLYYRRLFPYGQYYRWLNYGGVVKNYFQHREFSFTLKDDIYIRYQSFN 61

Query:    61 SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
             + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct:    62 NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query:   119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
             CS ADIC KCW  M++A  I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct:   122 CSSADICSKCWTLMTMAIHIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query:   179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQT 236
             RS + EY+S++     VKK     + +HP ++++  II+  F             K+   
Sbjct:   182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFVRKSINIIKKYFEQYALVDQDILENKQSWD 241

Query:   237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
             K+L LV    +R E+++ + R       ++W+ L   I  +Q  N + K    +E EI+L
Sbjct:   242 KILALVPE-TVRDELQQGFQR--QSNSPQRWETLKNTINKYQKNNKNDKCGLWLEWEIML 298

Query:   296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
             +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct:   299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 330

GO:0030894 "replisome" evidence=IEA

GO:0003896 "DNA primase activity" evidence=IEA

UNIPROTKB|P49642 PRIM1 "DNA primase small subunit" [Homo sapiens (taxid:9606)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 152/334 (45%), Positives = 213/334 (63%)

Query:     3 DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
             + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct:     2 ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFN 61

Query:    61 SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
             + ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct:    62 NQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query:   119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
             CS ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct:   122 CSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query:   179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQT 236
             RS + EY+S++     VKK     + +HP ++++  II+  F             KE   
Sbjct:   182 RSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWD 241

Query:   237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYA--IE-EI 293
             K+L LV    I  E+++ + +      +++W+ L  +   +Q  N+ +  KY   +E EI
Sbjct:   242 KILALVPE-TIHDELQQSFQK--SHNSLQRWEHLKKVASRYQ--NNIKNDKYGPWLEWEI 296

Query:   294 LLELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
             +L+  +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct:   297 MLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 330

GO:0003896 "DNA primase activity" evidence=IEA

GO:0030894 "replisome" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006269 "DNA replication, synthesis of RNA primer" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0000722 "telomere maintenance via recombination" evidence=TAS

GO:0000723 "telomere maintenance" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006270 "DNA replication initiation" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0032201 "telomere maintenance via semi-conservative replication" evidence=TAS

MGI|MGI:97757 Prim1 "DNA primase, p49 subunit" [Mus musculus (taxid:10090)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 149/331 (45%), Positives = 207/331 (62%)

Query:     3 DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYN 60
             + +DP  L E+L  YY+R+FPY  Y RWL YG +    F+ REFSFTL  DIY RY S+N
Sbjct:     2 EPFDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFN 61

Query:    61 SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
             + +EL+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct:    62 NQSELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query:   119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
             CS ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct:   122 CSSADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query:   179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQT 236
             RS + EY+S++     VKK     + +HP ++++  II+  F             KE   
Sbjct:   182 RSGIVEYLSLVKGGQDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVGQDILENKENWD 241

Query:   237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLE 296
             K+L LV    I  E+++ + +       ++W+ L  +    Q   +D+   +   E++L+
Sbjct:   242 KILALVPE-TIHDELQRGFQKFHSSP--QRWEHLRKVANSSQNMKNDKCGPWLEWEVMLQ 298

Query:   297 LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
               +PRLD++VSKGVNHLLKSPF VHPKTG+I
Sbjct:   299 YCFPRLDVNVSKGVNHLLKSPFSVHPKTGRI 329

GO:0003896 "DNA primase activity" evidence=IEA

GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006260 "DNA replication" evidence=IEA

GO:0006269 "DNA replication, synthesis of RNA primer" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0030894 "replisome" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|I3LGL1 LOC100622817 "DNA primase" [Sus scrofa (taxid:9823)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 150/332 (45%), Positives = 209/332 (62%)

Query:     3 DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYN 60
             + +DP  L E+L  YY+R+FPY  Y RWL YG +  + F+ REFSFTL  DIY RY S+N
Sbjct:     2 ETFDPTELPELLKLYYRRLFPYAQYYRWLNYGGVVKNYFQHREFSFTLKDDIYIRYQSFN 61

Query:    61 SPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNC 118
             + +EL+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR C
Sbjct:    62 NQSELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRC 121

Query:   119 CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRG 178
             CS ADIC KCW  M++A  I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    
Sbjct:   122 CSSADICSKCWTLMTMAIHIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAV 181

Query:   179 RSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQT 236
             RS + EY+S++     VKK     + +HP ++++  II+  F             KE   
Sbjct:   182 RSGIVEYLSLVKGGQDVKKKVHLNEKIHPFVRKSINIIKKYFEEYALVGQNILENKESWD 241

Query:   237 KVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIE-EILL 295
             K+L LV    +  E+++ + +      +++W+ L      +Q  + + K    +E EI+L
Sbjct:   242 KILALVPE-TMHDELQQSFQK--HQNSLQRWEYLKKAASRYQNNSKNDKCGPWLEWEIML 298

Query:   296 ELAYPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
             +  +PRLDI+VSKG+NHLLKSPF VHPKTG+I
Sbjct:   299 QYCFPRLDINVSKGINHLLKSPFSVHPKTGRI 330

GO:0030894 "replisome" evidence=IEA

GO:0003896 "DNA primase activity" evidence=IEA

UNIPROTKB|F8VNY2 PRIM1 "DNA primase" [Homo sapiens (taxid:9606)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 149/332 (44%), Positives = 207/332 (62%)

Query:     3 DKYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN-----FRKREFSFTLNGDIYARYI 57
             + +DP  L E+L  YY+R+FPY  Y RWL YG  D      F+ REFSFTL  DIY RY 
Sbjct:     2 ETFDPTELPELLKLYYRRLFPYSQYYRWLNYGGGDGVIKNYFQHREFSFTLKDDIYIRYQ 61

Query:    58 SYNSPNELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDV 115
             S+N+ ++L+K++ K  P KID+GA+Y   P  H  ++   F  + KELVFDIDMTDYDDV
Sbjct:    62 SFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDV 121

Query:   116 RNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALD 175
             R CCS ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L 
Sbjct:   122 RRCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLS 181

Query:   176 GRGRSCLAEYMSVLTANP-VKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKE 233
                RS + EY+S++     VKK     + +HP ++++  II+  F             KE
Sbjct:   182 SAVRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKE 241

Query:   234 RQTKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYA--IE 291
                K+L LV    I  E+++ + +      +++W+ L  +   +Q  N+ +  KY   +E
Sbjct:   242 SWDKILALVPE-TIHDELQQSFQK--SHNSLQRWEHLKKVASRYQ--NNIKNDKYGPWLE 296

Query:   292 -EILLELAYPRLDIHVSKGVNHLLKSPFCVHP 322
              EI+L+  +PRLDI+VSKG+NHLLKSPF VHP
Sbjct:   297 WEIMLQYCFPRLDINVSKGINHLLKSPFSVHP 328

GO:0003896 "DNA primase activity" evidence=IEA

GO:0030894 "replisome" evidence=IEA

UNIPROTKB|F1LQA1 Prim1 "DNA primase" [Rattus norvegicus (taxid:10116)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 147/329 (44%), Positives = 203/329 (61%)

Query:     5 YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDN--FRKREFSFTLNGDIYARYISYNSP 62
             +DP  L E+L  YY+R+FPY  Y RWL YG +    F+ REFSFTL  DIY RY S+N+ 
Sbjct:     4 FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFNNQ 63

Query:    63 NELKKDLIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCS 120
             +   K++ K     ++LGA+Y   P  H  ++   F  + KELVFDIDMTDYDDVR CCS
Sbjct:    64 SXXXKEMQKTNTILLELGAVYSHRPSQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCS 123

Query:   121 GADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRS 180
              ADIC KCW  M++A +I+D AL+EDF F+  LWV+SGRRG+HCWVCDE+   L    RS
Sbjct:   124 SADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRS 183

Query:   181 CLAEYMSVLTA-NPVKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQTKV 238
              + EY+S++   + VKK     + +HP ++++  II+  F             +E   K+
Sbjct:   184 GIVEYLSLIKGGHDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVDQDILENQENWDKI 243

Query:   239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
             L LV   +I  E++K + R       ++W+ L  +    Q   +D+   +   EI+L+  
Sbjct:   244 LALVPE-NIHDELQKGFQRFHSSP--QRWEYLRKVASAPQNTKNDKCGPWLEWEIMLQYC 300

Query:   299 YPRLDIHVSKGVNHLLKSPFCVHPKTGKI 327
             +PRLDI+VSKGVNHLLKSPF VHPKTG+I
Sbjct:   301 FPRLDINVSKGVNHLLKSPFSVHPKTGRI 329

GO:0003896 "DNA primase activity" evidence=IEA

GO:0030894 "replisome" evidence=IEA

POMBASE|SPAC6B12.10c spp1 "DNA primase catalytic subunit Spp1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 136/328 (41%), Positives = 203/328 (61%)

Query:    11 TEMLPFYYKRIFPYGPYLRWLFYGNL--DNFRKREFSFTLNGDIYARYISYNSPNELKKD 68
             +E +  YY+ +FP+    +WL +G +  ++F  REF+FTL  D Y RY+S+++  ELKK+
Sbjct:    32 SETMIQYYRHLFPWKYLFQWLNHGPVVTNDFAHREFAFTLPNDAYIRYLSFSNWEELKKE 91

Query:    69 LIKRCPQKIDLGAIYDICPKDH--LQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
              +  CP + ++G +Y   P+D   ++ S F P  KELVFDIDMTDYDDVR CCS  +ICE
Sbjct:    92 ALNLCPSRFEVGPVYSANPRDRKTIRKSTFHPLKKELVFDIDMTDYDDVRTCCSKTNICE 151

Query:   127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
             KCW +++IA ++LD    EDF F+ +LWV+SGRRGIH W+CDE A +LD R R  +A Y+
Sbjct:   152 KCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGIHAWICDEIACSLDDRSRRMIASYL 211

Query:   187 SVLTANPVKKVFLTGDV---LHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQTKVLGLV 242
              V+  NP   V L  ++   LHPHL R+  I++  F           ++KE    +L L+
Sbjct:   212 QVVVGNPQGGVRLINNLKRPLHPHLTRSLNILKSAFVKIVLEDQDPWASKEGAENLLKLL 271

Query:   243 SNGDIRAEIEKEWTRIGPGQDVE-KWDRLVAIIKHHQ-AKNSDRKLKYAIEEILLELAYP 300
              + D+ + + K+W  + P +  + KW  +  ++     A  S   +  A ++I+L   YP
Sbjct:   272 PDKDLASALRKKW-EVDPERSSKNKWSDIDTVLASGSIASISPSVIAIAKQDIVLTYLYP 330

Query:   301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             RLD+ VS+ +NHLLKSPFCVHP T ++C
Sbjct:   331 RLDVEVSRHLNHLLKSPFCVHPGTSRVC 358

GO:0000723 "telomere maintenance" evidence=IMP

GO:0000790 "nuclear chromatin" evidence=IC

GO:0003896 "DNA primase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005658 "alpha DNA polymerase:primase complex" evidence=TAS

GO:0006269 "DNA replication, synthesis of RNA primer" evidence=IEA

GO:0043596 "nuclear replication fork" evidence=IC

GO:0046872 "metal ion binding" evidence=IEA

CGD|CAL0004759 orf19.4030 [Candida albicans (taxid:5476)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 126/329 (38%), Positives = 189/329 (57%)

Query:    14 LPFYYKRIFPYGPYLRWLFYGN--LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIK 71
             + FYY+R+ P+    +WL +      +F  REF++     IY RY S+ +  E KK ++ 
Sbjct:    29 MKFYYQRLLPFRYIFQWLSHSPKPTKDFTMREFAYEYRSKIYQRYNSFGTLEEFKKSVVT 88

Query:    72 RCPQKIDLGAIYDICPKD--HLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCW 129
               P + ++GA+Y I PK+  +L    F P+ KELVFDID+TDYDD+R CC G DIC KCW
Sbjct:    89 ANPTRFEIGAVYKINPKERKNLPKQAFKPESKELVFDIDLTDYDDIRTCCQGTDICCKCW 148

Query:   130 RYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVL 189
             +++ +  KI++ ALREDF F+ L+WVFSGRRG HCWV D+ A  LD   R  + +Y+ VL
Sbjct:   149 KFIQVGSKIIEAALREDFGFEHLVWVFSGRRGAHCWVSDKRARELDETSRKAIIDYLDVL 208

Query:   190 TANPVKKVFLTGDVLHPHLKRAKLIIEDQFXXXXXXXXXX-STKERQTK-------VLGL 241
             ++             HPH++R+  I++ +F           +T   +TK       +L  
Sbjct:   209 SSKNQNGSLNIKKPFHPHVERSFEIVKKEFLNVILQEQDPWNTTSEETKAWKQVDELLAF 268

Query:   242 VSNGDIRAEIEKEWTRIGPGQ-DVEKWDRLVAIIKHHQAKNSD-RKLKYAIEEILLELAY 299
             + N  ++ E++ +W     G    EKWD +  +  +    NS   +L  A ++I++   Y
Sbjct:   269 IPNKALQIELKNKWKGQTFGSTSKEKWDDISTVASNVLKSNSQVAQLTEAKKDIIIYYMY 328

Query:   300 PRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
             PRLD+ VS+ V HLLKSPFC+HP TG +C
Sbjct:   329 PRLDVQVSRQVIHLLKSPFCIHPGTGNVC 357

GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0003896 "DNA primase activity" evidence=IEA

GO:0006269 "DNA replication, synthesis of RNA primer" evidence=IEA

GO:0000723 "telomere maintenance" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O14215	PRI1_SCHPO	2, ., 7, ., 7, ., -	0.4250	0.9695	0.7004	yes	N/A
Q24317	PRI1_DROME	2, ., 7, ., 7, ., -	0.4764	0.9786	0.7328	yes	N/A
P20664	PRI1_MOUSE	2, ., 7, ., 7, ., -	0.4636	0.9786	0.7697	yes	N/A
P34471	PRI1_CAEEL	2, ., 7, ., 7, ., -	0.3837	0.9695	0.7756	yes	N/A
P10363	PRI1_YEAST	2, ., 7, ., 7, ., -	0.3630	0.9603	0.7701	yes	N/A
A5UJA2	PRIS_METS3	2, ., 7, ., 7, ., -	0.2374	0.8109	0.8209	yes	N/A
Q7KQM1	PRI1_PLAF7	2, ., 7, ., 7, ., -	0.3697	0.9512	0.6902	yes	N/A
P49642	PRI1_HUMAN	2, ., 7, ., 7, ., -	0.4624	0.9847	0.7690	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	328
cd04860	232	cd04860, AE_Prim_S, AE_Prim_S: primase domain simi	4e-71
COG1467	341	COG1467, PRI1, Eukaryotic-type DNA primase, cataly	1e-47
pfam01896	133	pfam01896, DNA_primase_S, Eukaryotic and archaeal	1e-22
TIGR00335	297	TIGR00335, primase_sml, DNA primase, eukaryotic-ty	3e-22
cd00525	136	cd00525, AE_Prim_S_like, AE_Prim_S_like: primase d	1e-13
PRK00419	376	PRK00419, PRK00419, DNA primase small subunit; Rev	1e-11
cd04860	232	cd04860, AE_Prim_S, AE_Prim_S: primase domain simi	6e-11
pfam01896	133	pfam01896, DNA_primase_S, Eukaryotic and archaeal	9e-06

>gnl|CDD|240130 cd04860, AE_Prim_S, AE_Prim_S: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases

 Score =  220 bits (562), Expect = 4e-71
 Identities = 85/198 (42%), Positives = 109/198 (55%), Gaps = 12/198 (6%)

Query: 23  PYGPYLRWLFYG--NLDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLG 80
           P      +L YG    D    REF FTL   +Y R++S++S  EL+K L++  P+     
Sbjct: 1   PSLFRYYYLNYGLEIPDYLENREFGFTLFDGVYIRHLSFSSAEELRKYLLRNVPR----- 55

Query: 81  AIYDICPKDHLQH--SVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKI 138
           A+Y                   +ELVFDID  DYDDVR CCSGA ICEKCW++   A KI
Sbjct: 56  AVYSSSAYYRKPSAKGEKGWLGRELVFDIDADDYDDVRTCCSGATICEKCWKFAKEAVKI 115

Query: 139 LDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKV- 197
           LD  LREDF F+ +LWVFSGRRG H WVCDE A  LD   R  + +Y++ +  N  K   
Sbjct: 116 LDDILREDFGFKHILWVFSGRRGYHVWVCDEKARKLDSDERREIVDYLNGIGLNEDKIKK 175

Query: 198 --FLTGDVLHPHLKRAKL 213
                G  LHP ++RA +
Sbjct: 176 VKVNLGRPLHPGIRRALI 193

Primases are DNA-dependent RNA polymerases which synthesis the short RNA primers required for DNA replication. In addition to its catalytic role in replication, DNA primase may play a role in coupling replication to DNA damage repair and in checkpoint control during S phase. In eukaryotes, this small catalytically active primase subunit (p50) and a larger primase subunit (p60), referred to jointly as the core primase, associate with the B subunit and the DNA polymerase alpha subunit in a complex, called Pol alpha-pri. The function of the larger primase subunit is unclear. Included in this group are Pfu41 and Pfu46, these two proteins comprise the primase complex of the archaea Pyrococcus furiosus; Pfu41 and Pfu46 have sequence identity to the eukaryotic p50 and p60 primase proteins respectively. Pfu41 preferentially uses dNTPs as substrate. Pfu46 regulates the primase activity of Pfu41. Length = 232

>gnl|CDD|224384 COG1467, PRI1, Eukaryotic-type DNA primase, catalytic (small) subunit [DNA replication, recombination, and repair]

 Score =  163 bits (414), Expect = 1e-47
 Identities = 82/304 (26%), Positives = 125/304 (41%), Gaps = 35/304 (11%)

Query: 36  LDNFRKREFSFTLNGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSV 95
           LD   + EF F L G +Y R++S+ S  EL+  L +  P+ +   A Y   PK+      
Sbjct: 30  LDIDEREEFYFPLKGGVYDRHLSFRSERELRDYLRRNAPRHVYSSAAYYEKPKER----- 84

Query: 96  FTPKM-------KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFD 148
              KM        ELVFDID     + R  C    +C+ C      A ++L+  LREDF 
Sbjct: 85  ---KMEEKGWLGAELVFDIDADHLPERR--CDKDSVCKMCLEDKKEAVRLLNDFLREDFG 139

Query: 149 FQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHL 208
           F+ +  VFSGRRG H  V DE  L+L    R  + +Y+S        +       L   L
Sbjct: 140 FKDIKIVFSGRRGYHVHVSDEEVLSLGSEERREILDYVSGNRLEL--ETVFRLRPLKRLL 197

Query: 209 KRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEIEK-EWTRIGPGQDVEKW 267
            R     +  F KL   +  L  +             DI   + +    R+    D +  
Sbjct: 198 GRVLGWGKGLFIKLRLREARLMKRV----------KEDIENALARLPDKRLI-AIDEKVT 246

Query: 268 D---RLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVHPKT 324
           +   RL+ +      K      +  ++E L   +   LD  V+K +  LL+ P  +H K 
Sbjct: 247 NDITRLIRLPGSLDGKGFLTVARLGLDE-LRVFSPLYLDGEVTKDLKRLLRLPGSLHSKL 305

Query: 325 GKIC 328
           G++ 
Sbjct: 306 GEVK 309

Length = 341

>gnl|CDD|216771 pfam01896, DNA_primase_S, Eukaryotic and archaeal DNA primase small subunit

 Score = 91.1 bits (226), Expect = 1e-22
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%)

Query: 105 FDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHC 164
           FDID  DYDDVR CCS A++  KC +++  A ++LD AL EDF     L VFSG+RG H 
Sbjct: 1   FDIDFDDYDDVRTCCSIANV--KCIKFVVNAARVLDRALLEDFGVTHTLVVFSGKRGFHL 58

Query: 165 WVCDEAALALDGRGRSCLAEY 185
           WV  + A +L    R  +A+Y
Sbjct: 59  WVPFKEARSLGDARRREIADY 79

DNA primase synthesises the RNA primers for the Okazaki fragments in lagging strand DNA synthesis. DNA primase is a heterodimer of large and small subunits. This family also includes baculovirus late expression factor 1 or LEF-1 proteins. Baculovirus LEF-1 is a DNA primase enzyme. Bacterial DNA primase adopts a different fold to archaeal and eukaryotic primases. Length = 133

>gnl|CDD|232925 TIGR00335, primase_sml, DNA primase, eukaryotic-type, small subunit, putative

 Score = 94.6 bits (235), Expect = 3e-22
 Identities = 72/317 (22%), Positives = 108/317 (34%), Gaps = 54/317 (17%)

Query: 17  YYKRIFPYGPYLRWLFY--GNLDNFRKREFSFTLNGDIY-ARYISYNSPNELKKDLIKRC 73
           YYK  + +      L         F  REF    +  ++  RY S+     LK    K  
Sbjct: 6   YYKEKYNFYYSKNELELPRKFNREFAFREFGLLPDFVMHRHRYESFFRERILKNVPAKIY 65

Query: 74  PQKIDLGAIYDICP--KDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRY 131
           P        Y+  P  +  L   +      EL FDID+ D    +  C G          
Sbjct: 66  PSSAYYSRAYEDKPEKRGWLGKGLI---RDELAFDIDVKDQSFEKAECDG--KQVCLEEA 120

Query: 132 MSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMSVLTA 191
             +A    DT LR DF       VFSG RG H  V D  +          L E +     
Sbjct: 121 KLLAVLRADTGLR-DFGLYDSGGVFSGVRGYHEEVLDLGSRE--------LREIVRYERL 171

Query: 192 NPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGDIRAEI 251
              K V +    L+ +    K ++  +      E+E+L++K +                 
Sbjct: 172 RYPKIVRVEKRFLNSN--AVKRVLN-RLLLKALEEEILTSKLKILP-------------- 214

Query: 252 EKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVN 311
                      D+ KW  +  +I       S++K   A+E  + +     LD  V+    
Sbjct: 215 ----------NDLRKWKLIKEVI-----FKSEKKDYSALEIYIDK---IVLDDKVTLDRI 256

Query: 312 HLLKSPFCVHPKTGKIC 328
            LL+ P  +H  TG IC
Sbjct: 257 RLLRHPKSLHRVTGVIC 273

Archaeal members differ substantially from eukaryotic members and should be considered putative pending experimental evidence. The protein is universal and single copy among completed archaeal and eukarotic genomes to date. DNA primase creates RNA primers needed for DNA replication.This model is named putative because the assignment is putative for archaeal proteins. Eukaryotic proteins scoring above the trusted cutoff can be considered authentic [DNA metabolism, DNA replication, recombination, and repair]. Length = 297

>gnl|CDD|238291 cd00525, AE_Prim_S_like, AE_Prim_S_like: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 32/132 (24%), Positives = 42/132 (31%), Gaps = 31/132 (23%)

Query: 42  REFSFTLNG--DIYARYISY---NSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSVF 96
           R  S         + R+  +       E+   L    P     G I     +        
Sbjct: 1   RPVSPIRPPGKGPFQRHWPFGATTDDAEILAWLANLPP-----GNIGLSLGRYDK----- 50

Query: 97  TPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVF 156
             K   LVFD+D  DYD              CW  +  A  +L   L ED      L V 
Sbjct: 51  LWKPDLLVFDLDPDDYD--------------CWEDVKEAALLLRELLDEDGL--NTLVVT 94

Query: 157 SGRRGIHCWVCD 168
           SG RG+H +V  
Sbjct: 95  SGSRGLHVYVRL 106

The replication machineries of A/Es are distinct from that of bacteria. Primases are DNA-dependent RNA polymerases which synthesis the short RNA primers required for DNA replication. In eukaryotes, this small catalytically active primase subunit (p50) and a larger primase subunit (p60), referred to jointly as the core primase, associate with the B subunit and the DNA polymerase alpha subunit in a complex, called Pol alpha-pri. In addition to its catalytic role in replication, eukaryotic DNA primase may play a role in coupling replication to DNA damage repair and in checkpoint control during S phase. Pfu41 and Pfu46 comprise the primase complex of the archaea Pyrococcus furiosus; these proteins have sequence identity to the eukaryotic p50 and p60 primase proteins respectively. Pfu41 preferentially uses dNTPs as substrate. Pfu46 regulates the primase activity of Pfu41. Also found in this group is the primase-polymerase (primpol) domain of replicases from archaeal plasmids including the ORF904 protein of pRN1 from Sulfolobus islandicus (pRN1 primpol). The pRN1 primpol domain exhibits DNA polymerase and primase activities; a cluster of active site residues (three acidic residues, and a histidine) is required for both these activities. The pRN1 primpol primase activity prefers dNTPs to rNTPs; however incorporation of dNTPs requires rNTP as cofactor. This group also includes the Pol domain of bacterial LigD proteins such Mycobacterium tuberculosis (Mt)LigD. MtLigD contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. LigD Pol plays a role in non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB) in vivo, perhaps by filling in short 5'-overhangs with ribonucleotides; the filled in termini would be sealed by the associated LigD ligase domain. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. Length = 136

>gnl|CDD|234755 PRK00419, PRK00419, DNA primase small subunit; Reviewed

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 36/165 (21%)

Query: 41  KREFSFTLNG----DIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDICPKDHLQHSV- 95
           KREF F   G    D   R++S++   EL+  L +  P+              H+ +SV 
Sbjct: 30  KREFGFIPFGEGPSDTMVRHLSFSDLGELRDYLRRTAPR--------------HVYYSVA 75

Query: 96  -------FTPKMK-----ELVFDIDMTDYDDVRNCCSGADIC-EKCWRYMSIACKILDTA 142
                   T + K     +L+FD+D      VR        C E+       A ++LD  
Sbjct: 76  RYELPSARTMEEKGWLGADLIFDLDADHLPGVRCEEDSYCECLERAKE---EALRLLDF- 131

Query: 143 LREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS 187
           L +DF F+ +  VFSG RG H  V DE  L LD   R  + +Y+S
Sbjct: 132 LEDDFGFEDIHVVFSGGRGYHVHVRDEDVLELDSDERREIVDYVS 176

Length = 376

>gnl|CDD|240130 cd04860, AE_Prim_S, AE_Prim_S: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 301 RLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
            +D +V+K +N LL+ PF +H KTG I 
Sbjct: 192 LIDENVTKDINRLLRLPFSLHGKTGLIV 219

Primases are DNA-dependent RNA polymerases which synthesis the short RNA primers required for DNA replication. In addition to its catalytic role in replication, DNA primase may play a role in coupling replication to DNA damage repair and in checkpoint control during S phase. In eukaryotes, this small catalytically active primase subunit (p50) and a larger primase subunit (p60), referred to jointly as the core primase, associate with the B subunit and the DNA polymerase alpha subunit in a complex, called Pol alpha-pri. The function of the larger primase subunit is unclear. Included in this group are Pfu41 and Pfu46, these two proteins comprise the primase complex of the archaea Pyrococcus furiosus; Pfu41 and Pfu46 have sequence identity to the eukaryotic p50 and p60 primase proteins respectively. Pfu41 preferentially uses dNTPs as substrate. Pfu46 regulates the primase activity of Pfu41. Length = 232

>gnl|CDD|216771 pfam01896, DNA_primase_S, Eukaryotic and archaeal DNA primase small subunit

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 285 KLKYAIEEILLE-------LAYPRLDIHVSKGVNHLLKSPFCVHPKTGKIC 328
               A  E LLE          PRLD+ V+KG+ HL++ PF  HPKTG++ 
Sbjct: 78  DYAKAFAETLLEEQDDFPTATKPRLDVLVTKGIRHLIRLPFSRHPKTGRVS 128

DNA primase synthesises the RNA primers for the Okazaki fragments in lagging strand DNA synthesis. DNA primase is a heterodimer of large and small subunits. This family also includes baculovirus late expression factor 1 or LEF-1 proteins. Baculovirus LEF-1 is a DNA primase enzyme. Bacterial DNA primase adopts a different fold to archaeal and eukaryotic primases. Length = 133

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	328
1zt2_A	330	Heterodimeric Structure Of The Core Primase. Length		4e-04

>pdb|1ZT2|A Chain A, Heterodimeric Structure Of The Core Primase. Length = 330

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 29/171 (16%)
Query: 42  REFSFT-LNGDIYARYISYNSPNELKKDLIKR-CPQKIDL-GAIYDICPKDHLQHSVFTP 98
           REF+      D Y R++S++S  EL+  L+ R  P  +    A Y +    +++   +  
Sbjct: 36  REFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLHLFYSSARYQLPSARNMEEKAWMG 95
Query: 99  KMKELVFDID---MTDYDDVRNC--CSGADICEKCWR---------YMSIAC-------- 136
              +L+FDID   +     +R C  C  A + EKC R          M+  C        
Sbjct: 96  --SDLLFDIDADHLCKLRSIRFCPVCGNAVVSEKCERDNVETLEYVEMTSECIKRGLEQT 153
Query: 137 KILDTALREDFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYM 186
           + L   L +DF  +  ++ FSG RG H  V C      LD   R  +AEY+
Sbjct: 154 RNLVEILEDDFGLKPKVY-FSGNRGFHVQVDCYGNCALLDSDERKEIAEYV 203

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
1v33_A	366	DNA primase small subunit; nucleotidyl transferase	6e-73
1zt2_A	330	DNA primase small subunit; heterodimeric complex,	8e-39
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} SCOP: d.264.1.1 PDB: 1v34_A* 1g71_A* Length = 366

 Score =  229 bits (583), Expect = 6e-73
 Identities = 57/322 (17%), Positives = 102/322 (31%), Gaps = 22/322 (6%)

Query: 8   ESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGD-IYARYISYNSPNELK 66
           E   E    +Y   +       ++    +     REF F  +G+    R   Y    +L+
Sbjct: 25  EVTREERKNFYTNEWKVKDIPDFI----VKTLELREFGFDHSGEGPSDRKNQYTDIRDLE 80

Query: 67  KDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
             +    P  +         P++            ELVFDID  D    R       +C 
Sbjct: 81  DYIRATAPYAVYSSVALYEKPQEME-----GWLGTELVFDIDAKDLPLRRCEHEPGTVCP 135

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
            C        +     LRE+  F  +  ++SG RG H  V DE AL LD + R  +  ++
Sbjct: 136 ICLNDAKEIVRDTVIILREELGFNDIHIIYSG-RGYHIRVLDEWALKLDSKSRERILSFV 194

Query: 187 SVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGD 246
           S      V++       L  + +   ++                 + +   ++       
Sbjct: 195 SASEIEDVEEF----RKLLLNKRGWFVLNHGYPRAFRLRFGYFILRIKLPHLINAGIRKS 250

Query: 247 IRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHV 306
           I   I K    I         + +   I     +    +    +  +    +    D  V
Sbjct: 251 IAKSILKSKEEI-------YEEFVRKAILAAFPQGVGIESLAKLFALSTRFSKSYFDGRV 303

Query: 307 SKGVNHLLKSPFCVHPKTGKIC 328
           +  +  +L+ P  +H K G I 
Sbjct: 304 TVDLKRILRLPSTLHSKVGLIA 325

>1zt2_A DNA primase small subunit; heterodimeric complex, replication, transferase; HET: DNA; 3.33A {Sulfolobus solfataricus} SCOP: d.264.1.1 Length = 330

 Score =  139 bits (350), Expect = 8e-39
 Identities = 51/248 (20%), Positives = 78/248 (31%), Gaps = 40/248 (16%)

Query: 6   DPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFT-LNGDIYARYISYNSPNE 64
               +      YY       P           +   REF+      D Y R++S++S  E
Sbjct: 10  QTNLIKSFFRNYYLNAELELP----------KDMELREFALQPFGSDTYVRHLSFSSSEE 59

Query: 65  LKKDLIKR-CPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDID---MTDYDDVRNC-- 118
           L+  L+ R  P  +   +     P              +L+FDID   +     +R C  
Sbjct: 60  LRDYLVNRNLPLHLFYSSARYQLPSAR-NMEEKAWMGSDLLFDIDADHLCKLRSIRFCPV 118

Query: 119 CSGADICEKCWRYMSIAC-----------------KILDTALREDFDFQLLLWVFSGRRG 161
           C  A + EKC R                       + L   L +DF  +  ++ FSG RG
Sbjct: 119 CGNAVVSEKCERDNVETLEYVEMTSECIKRGLEQTRNLVEILEDDFGLKPKVY-FSGNRG 177

Query: 162 IHCWV-CDEAALALDGRGRSCLAEYMSVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFE 220
            H  V C      LD   R  +AEY   +    V       +     + R    I     
Sbjct: 178 FHVQVDCYGNCALLDSDERKEIAEY---VMGIGVPGYPGGSENAPGWVGRKNRGINGVTI 234

Query: 221 KLLEEQEL 228
                 ++
Sbjct: 235 DEQVTIDV 242

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 6e-07
 Identities = 53/317 (16%), Positives = 106/317 (33%), Gaps = 80/317 (25%)

Query: 40  RKREFSFTLNGDIYARYIS---YNSPNELKKDLIKRCPQ-KIDLGAIYDICPKDHLQHSV 95
              +    ++  I+  +++    NSP  + + L K   Q   +  +  D      L+   
Sbjct: 172 LSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 96  FTPKMKELVFDIDMTDY-------DDVRNCCSGADICEKCWRYMSIACKIL-DTALREDF 147
              +++ L+       Y        +V+N         K W   +++CKIL  T  ++  
Sbjct: 230 IQAELRRLLKS---KPYENCLLVLLNVQN--------AKAWNAFNLSCKILLTTRFKQVT 278

Query: 148 DFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYMS---------VLTANPVKKVF 198
           DF       S     H  +   +        +S L +Y+          VLT NP  ++ 
Sbjct: 279 DF------LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLS 331

Query: 199 LTGDVLHPHLKRA---KLIIEDQFEKLLEEQ-ELLSTKERQ----------------TKV 238
           +  + +   L      K +  D+   ++E    +L   E +                T +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 239 LGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELA 298
           L L+    I++++            V K  +   + K        ++   +I  I LEL 
Sbjct: 392 LSLIWFDVIKSDVM---------VVVNKLHKYSLVEKQ------PKESTISIPSIYLELK 436

Query: 299 YPRLD---IHVSKGVNH 312
               +   +H    V+H
Sbjct: 437 VKLENEYALH-RSIVDH 452

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
1v33_A	366	DNA primase small subunit; nucleotidyl transferase	100.0
1zt2_A	330	DNA primase small subunit; heterodimeric complex,	100.0
2fao_A	309	Probable ATP-dependent DNA ligase; polymerase, pri	95.69
2iru_A	303	Putative DNA ligase-like protein RV0938/MT0965; po	95.6

>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} SCOP: d.264.1.1 PDB: 1v34_A* 1g71_A*

Probab=100.00  E-value=5.1e-84  Score=631.45  Aligned_cols=289  Identities=21%  Similarity=0.260  Sum_probs=247.8

Q ss_pred             hhhhhHHHHHhhhcCCccccccccccCCCCCCCCceeEEEe-cCCeeeccccCCCHHHHHHHHHHhCCCeeEEeeccCcC
Q psy13396          8 ESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTL-NGDIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDIC   86 (328)
Q Consensus         8 ~~~~~~~~~YY~~~fp~~~~~~WL~y~~~~~~~~REfaf~~-~~~~y~R~~sF~~~~el~~~l~~~~P~~i~igavy~~~   86 (328)
                      +..++.|+.||+++||++.+++||+    .++++|||||++ .+++|+||+||+|.+||+++|++++|.++|+|+|||..
T Consensus        25 ~~~~~~l~~YY~r~fp~~~~~~wl~----~~~~~REfaf~~~~~~~~~R~~sF~~~~el~~~l~~~~P~~iy~saayy~~  100 (366)
T 1v33_A           25 EVTREERKNFYTNEWKVKDIPDFIV----KTLELREFGFDHSGEGPSDRKNQYTDIRDLEDYIRATAPYAVYSSVALYEK  100 (366)
T ss_dssp             CCCHHHHHHHHHHTCCGGGSCHHHH----TTGGGCCEEEESSSSCSCEEEECCSSHHHHHHHHHHHCCSEEEEESEEEEE
T ss_pred             cCCHHHHHHHHHhhCCccccccccc----ccCcCeEEEEEECCCCccccccccCCHHHHHHHHHHhCCCEEEEcceeecC
Confidence            3457789999999999999999994    479999999997 57789999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCccceEEeecCCCCCCcccc-CCcchhhHHHHHHHHHHHHHHHHHHhhhcCCceeEEEEeCCCeeEEE
Q psy13396         87 PKDHLQHSVFTPKMKELVFDIDMTDYDDVRNC-CSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCW  165 (328)
Q Consensus        87 P~~~~~kg~~~p~grELVFDID~~dyd~vr~C-c~~~~iC~kCw~~~~~a~klld~~L~~dFGf~~i~~vFSG~RG~H~w  165 (328)
                      |.+  .++|   .||||||||||||| ++|+| |+++.||.+||++|++|+++|+.+|++||||++++||||| ||||||
T Consensus       101 P~~--~k~~---~~~ELVFDID~~d~-diRtC~C~~~~iC~kC~~~~~~a~~~l~~~L~~dFGf~~i~~vfSG-RG~Hvw  173 (366)
T 1v33_A          101 PQE--MEGW---LGTELVFDIDAKDL-PLRRCEHEPGTVCPICLNDAKEIVRDTVIILREELGFNDIHIIYSG-RGYHIR  173 (366)
T ss_dssp             TTT--TEEE---EEECEEEEEEGGGC-SSCSSCSCTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEECS-SEEEEE
T ss_pred             hhh--cCCc---cccceEEEecCCcC-CcCccCCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEEEEeC-CeEEEE
Confidence            988  4677   48999999999999 59999 9999999999999999999999999999999999999999 999999


Q ss_pred             EechhhhcCChHHHHHHHhhhhhccCCc---ceeeeecCCCCCchHH----HHHHHHHHHHHHHhhhcccCC---CHHHH
Q psy13396        166 VCDEAALALDGRGRSCLAEYMSVLTANP---VKKVFLTGDVLHPHLK----RAKLIIEDQFEKLLEEQELLS---TKERQ  235 (328)
Q Consensus       166 V~D~~a~~l~~~~R~~Iv~Yl~~~~~~~---~k~v~~~~~~~hp~~~----ra~~il~~~f~~~l~~q~~l~---~~~~~  235 (328)
                      |||+.|+.|++++|++||+||++.+.+.   .++|+ ..++.||.+.    |++.++.++|...+.+|+.+.   +++.+
T Consensus       174 V~D~~ar~l~~~~R~~IvdYl~~~~~~~~~~~~~v~-~~~~~h~~~~~~~~r~~~~~~~~f~~~~~~~~~l~~g~~~~~~  252 (366)
T 1v33_A          174 VLDEWALKLDSKSRERILSFVSASEIEDVEEFRKLL-LNKRGWFVLNHGYPRAFRLRFGYFILRIKLPHLINAGIRKSIA  252 (366)
T ss_dssp             ECCHHHHTCCHHHHHHHHHHHTTCSSCCHHHHHHHH-HHCGGGGGCSSSHHHHHHHHHHHHHTTCCHHHHHHTTCCHHHH
T ss_pred             EecHHhhhcCHHHHHHHhhhEEeeccCCccccceee-ccCCCCcccchhHHHHHHHHHHHHHHHhhhhhhhhccCCHHHH
Confidence            9999999999999999999999987533   35677 4667888866    889999999988744555654   78888


Q ss_pred             HHHHhccCChHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHhhcccCcCcccCCCcccc
Q psy13396        236 TKVLGLVSNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLK  315 (328)
Q Consensus       236 ~~lL~~ipd~~~~~~l~~~~~~~~~~~s~~~w~~l~~~~~~~~~~~~~~~~~~~~~eiv~~~~yPRlD~~VSk~~nHLLK  315 (328)
                      +++|+..      .++.+      +.++.++|..+++...       .+.+.. +.+++++++|||||+|||+|+|||||
T Consensus       253 ~~~l~~~------~~~~~------~~~s~~~w~~~~~~~~-------~~~~~~-l~~~v~~~~~~~lD~~VT~d~nhLLK  312 (366)
T 1v33_A          253 KSILKSK------EEIYE------EFVRKAILAAFPQGVG-------IESLAK-LFALSTRFSKSYFDGRVTVDLKRILR  312 (366)
T ss_dssp             HHHHHTH------HHHHH------HTTTTCCGGGSCTTCH-------HHHHHH-HHHHHHHHHHTSSCHHHHHCTTCEEE
T ss_pred             HHHHHHH------HHhhh------cccchhhHHHHhhhhh-------hhHHHH-HHHHHHHhhhcccCcccccCcceeee
Confidence            8888732      12222      1347888987753111       112333 45899999999999999999999999


Q ss_pred             CCCcccCCCCCCC
Q psy13396        316 SPFCVHPKTGKIC  328 (328)
Q Consensus       316 sPFcvHpkTGrVc  328 (328)
                      +|||||||||+||
T Consensus       313 ~PfslHpkTG~vc  325 (366)
T 1v33_A          313 LPSTLHSKVGLIA  325 (366)
T ss_dssp             CTTSEETTTTEEC
T ss_pred             cCccccCCCCcEE
Confidence            9999999999998

>1zt2_A DNA primase small subunit; heterodimeric complex, replication, transferase; HET: DNA; 3.33A {Sulfolobus solfataricus} SCOP: d.264.1.1

Probab=100.00  E-value=8.3e-65  Score=489.93  Aligned_cols=169  Identities=24%  Similarity=0.396  Sum_probs=151.6

Q ss_pred             chhhhhHHHHHhhhcCCccccccccccCCCCCCCCceeEEE-ecCCeeeccccCCCHHHHHHHHHH-hCCCeeEEeeccC
Q psy13396          7 PESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFT-LNGDIYARYISYNSPNELKKDLIK-RCPQKIDLGAIYD   84 (328)
Q Consensus         7 ~~~~~~~~~~YY~~~fp~~~~~~WL~y~~~~~~~~REfaf~-~~~~~y~R~~sF~~~~el~~~l~~-~~P~~i~igavy~   84 (328)
                      ..+++++|+.||++ +|..         .|.++++|||||+ +.+++|+||+||+|.+||+++|++ ++|.|+|+|++||
T Consensus        11 ~~~l~~~~~~YY~~-~~~~---------~~~~~~~REfaf~~~~~~~~~R~~sF~~~~el~~~l~~~~~P~~v~~s~a~Y   80 (330)
T 1zt2_A           11 TNLIKSFFRNYYLN-AELE---------LPKDMELREFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLHLFYSSARY   80 (330)
T ss_dssp             CCHHHHHHHHHHHH-CCCC---------CCTTGGGSCEEEEETTCSSCCCCBCCSSHHHHHHHHHTTCCEEEEEEESBCC
T ss_pred             HHHHHHHHHHHHhc-CCCC---------CCCcccceEEEEEEcCCCeeeeecccCCHHHHHHHHHhccCCceEEecccee
Confidence            46799999999999 7864         4899999999996 567789999999999999999999 9999999996666


Q ss_pred             cCccccc--CCCCCCCCccceEEeecCCCCC---CccccCCcc-----hhhH--------------HHHHHHH-HHHHHH
Q psy13396         85 ICPKDHL--QHSVFTPKMKELVFDIDMTDYD---DVRNCCSGA-----DICE--------------KCWRYMS-IACKIL  139 (328)
Q Consensus        85 ~~P~~~~--~kg~~~p~grELVFDID~~dyd---~vr~Cc~~~-----~iC~--------------kCw~~~~-~a~kll  139 (328)
                      ..|+++.  +|||   +||||||||||||||   ++|+||+++     ++|+              .||.+++ +|++|+
T Consensus        81 ~~P~~~~m~~k~~---~~rELVFDID~~d~d~~~~~r~C~~~~~~~~~~~C~kC~~~~~~~~~ic~~cl~~~k~~a~kll  157 (330)
T 1zt2_A           81 QLPSARNMEEKAW---MGSDLLFDIDADHLCKLRSIRFCPVCGNAVVSEKCERDNVETLEYVEMTSECIKRGLEQTRNLV  157 (330)
T ss_dssp             SCTTCSSHHHHCC---CCBCEEEEBCHHHHHCCEEEEECTTTCCBCSSSEETTTTEECEEEEECCHHHHHHHHHHHHHHH
T ss_pred             cCcccccccccCc---CceeeEEEecCCcCcccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHH
Confidence            6698855  7887   699999999999999   899999876     4555              5577887 699999


Q ss_pred             HHHHhhhcCCceeEEEEeCCCeeEEEEe-chhhhcCChHHHHHHHhhhhhcc
Q psy13396        140 DTALREDFDFQLLLWVFSGRRGIHCWVC-DEAALALDGRGRSCLAEYMSVLT  190 (328)
Q Consensus       140 d~~L~~dFGf~~i~~vFSG~RG~H~wV~-D~~a~~l~~~~R~~Iv~Yl~~~~  190 (328)
                      | +|++||||++ +|||||||||||||+ |++|+.|++++|++||+|+++++
T Consensus       158 d-~L~~dFGf~~-~ivFSG~RG~H~wV~~D~~a~~l~~~~R~~Iv~Y~~~~~  207 (330)
T 1zt2_A          158 E-ILEDDFGLKP-KVYFSGNRGFHVQVDCYGNCALLDSDERKEIAEYVMGIG  207 (330)
T ss_dssp             H-HHHHTTCCCC-EEEECSSSSEEEEECCCSGGGGCCHHHHHHHHHHHTTSS
T ss_pred             H-HHHHHcCCCe-eEEEeCCCceEEEEeCCHHHhhcCHHHHHHHHHHHHhcc
Confidence            9 9999999999 999999999999998 99999999999999999999865

>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*

Probab=95.69  E-value=0.015  Score=55.52  Aligned_cols=52  Identities=25%  Similarity=0.422  Sum_probs=38.1

Q ss_pred             cceEEeecCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHHhhhcCCceeEEEEeCCCeeEEEE-ec
Q psy13396        101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWV-CD  168 (328)
Q Consensus       101 rELVFDID~~dyd~vr~Cc~~~~iC~kCw~~~~~a~klld~~L~~dFGf~~i~~vFSG~RG~H~wV-~D  168 (328)
                      -+||||+|-..-.+              |..+.+|..++...| +++|.... ..-||++|+||.| ..
T Consensus       133 D~lvfDLDP~~~~~--------------f~~v~~aA~~~r~~L-~~lGL~~f-~KTSGgkGlHV~vPl~  185 (309)
T 2fao_A          133 DRFVLDLDPDPALP--------------WKRMLEATQLSLTLL-DELGLRAF-LKTSGGKGMHLLVPLE  185 (309)
T ss_dssp             SEEEEEEEECTTSC--------------HHHHHHHHHHHHHHH-HHHTCCCE-EEECSSSSEEEEEECC
T ss_pred             CEEEEECCCCcCCC--------------HHHHHHHHHHHHHHH-HHcCCcee-eEccCCCeeEEEEEcC
Confidence            58999999985322              344556777776455 67799774 4679999999999 44

>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*

Probab=95.60  E-value=0.019  Score=54.71  Aligned_cols=52  Identities=25%  Similarity=0.365  Sum_probs=38.5

Q ss_pred             cceEEeecCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHHhhhcCCceeEEEEeCCCeeEEEE-ec
Q psy13396        101 KELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWV-CD  168 (328)
Q Consensus       101 rELVFDID~~dyd~vr~Cc~~~~iC~kCw~~~~~a~klld~~L~~dFGf~~i~~vFSG~RG~H~wV-~D  168 (328)
                      -+||||+|-..-.+              |.-+.+|..++...| +++|.... ..-||+||+|++| ..
T Consensus       135 D~lvfDLDP~~~~~--------------f~~v~~aA~~~r~~L-~~lGL~~f-~KTSGgkGlHV~vPl~  187 (303)
T 2iru_A          135 TRLVFDLDPGEGVM--------------MAQLAEVARAVRDLL-ADIGLVTF-PVTSGSKGLHLYTPLD  187 (303)
T ss_dssp             EEEEEEEEECTTCC--------------HHHHHHHHHHHHHHH-HTTTCCCE-EEECSSSCEEEEEEEE
T ss_pred             CEEEEECCCCCCCC--------------HHHHHHHHHHHHHHH-HHcCCccc-eEccCCCeEEEEEEcC
Confidence            58999999976432              334556777776455 57799875 4789999999999 44

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	328
d1v33a_	346	d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus ho	1e-74
d1zt2a1	327	d.264.1.1 (A:3-329) DNA primase small subunit PriA	4e-35

>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Prim-pol domain
superfamily: Prim-pol domain
family: PriA-like
domain: DNA primase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  231 bits (591), Expect = 1e-74
 Identities = 58/322 (18%), Positives = 103/322 (31%), Gaps = 22/322 (6%)

Query: 8   ESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNGD-IYARYISYNSPNELK 66
           E   E    +Y   +       ++    +     REF F  +G+    R   Y    +L+
Sbjct: 5   EVTREERKNFYTNEWKVKDIPDFI----VKTLELREFGFDHSGEGPSDRKNQYTDIRDLE 60

Query: 67  KDLIKRCPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICE 126
             +    P  +         P++            ELVFDID  D    R       +C 
Sbjct: 61  DYIRATAPYAVYSSVALYEKPQEME-----GWLGTELVFDIDAKDLPLRRCEHEPGTVCP 115

Query: 127 KCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCWVCDEAALALDGRGRSCLAEYM 186
            C        +     LRE+  F  +  ++SG RG H  V DE AL LD + R  +  ++
Sbjct: 116 ICLNDAKEIVRDTVIILREELGFNDIHIIYSG-RGYHIRVLDEWALKLDSKSRERILSFV 174

Query: 187 SVLTANPVKKVFLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLVSNGD 246
           S      V++       L  + +   ++                 + +   ++       
Sbjct: 175 SASEIEDVEE----FRKLLLNKRGWFVLNHGYPRAFRLRFGYFILRIKLPHLINAGIRKS 230

Query: 247 IRAEIEKEWTRIGPGQDVEKWDRLVAIIKHHQAKNSDRKLKYAIEEILLELAYPRLDIHV 306
           I   I K         ++ +     AI+           L   +  +    +    D  V
Sbjct: 231 IAKSILKSKE------EIYEEFVRKAILAAFPQGVGIESLA-KLFALSTRFSKSYFDGRV 283

Query: 307 SKGVNHLLKSPFCVHPKTGKIC 328
           +  +  +L+ P  +H K G I 
Sbjct: 284 TVDLKRILRLPSTLHSKVGLIA 305

>d1zt2a1 d.264.1.1 (A:3-329) DNA primase small subunit PriA {Sulfolobus solfataricus [TaxId: 2287]} Length = 327

class: Alpha and beta proteins (a+b)
fold: Prim-pol domain
superfamily: Prim-pol domain
family: PriA-like
domain: DNA primase small subunit PriA
species: Sulfolobus solfataricus [TaxId: 2287]

 Score =  127 bits (321), Expect = 4e-35
 Identities = 47/208 (22%), Positives = 69/208 (33%), Gaps = 37/208 (17%)

Query: 5   YDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFT-LNGDIYARYISYNSPN 63
                +      YY       P           +   REF+      D Y R++S++S  
Sbjct: 7   GQTNLIKSFFRNYYLNAELELP----------KDMELREFALQPFGSDTYVRHLSFSSSE 56

Query: 64  ELKKDLIKR-CPQKIDLGAIYDICPKDHLQHSVFTPKMKELVFDIDMTDYDDVR-----N 117
           EL+  L+ R  P  +   +     P              +L+FDID      +R      
Sbjct: 57  ELRDYLVNRNLPLHLFYSSARYQLPSAR-NMEEKAWMGSDLLFDIDADHLCKLRSIRFCP 115

Query: 118 CCSGADICEKCWRYMSIACKI-----------------LDTALREDFDFQLLLWVFSGRR 160
            C  A + EKC R      +                  L   L +DF  +  ++ FSG R
Sbjct: 116 VCGNAVVSEKCERDNVETLEYVEMTSECIKRGLEQTRNLVEILEDDFGLKPKVY-FSGNR 174

Query: 161 GIHCWV-CDEAALALDGRGRSCLAEYMS 187
           G H  V C      LD   R  +AEY+ 
Sbjct: 175 GFHVQVDCYGNCALLDSDERKEIAEYVM 202

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d1v33a_	346	DNA primase {Archaeon Pyrococcus horikoshii [TaxId	100.0
d1zt2a1	327	DNA primase small subunit PriA {Sulfolobus solfata	100.0

>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Prim-pol domain
superfamily: Prim-pol domain
family: PriA-like
domain: DNA primase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.2e-83  Score=619.66  Aligned_cols=297  Identities=20%  Similarity=0.237  Sum_probs=221.8

Q ss_pred             chhhhhHHHHHhhhcCCccccccccccCCCCCCCCceeEEEecC-CeeeccccCCCHHHHHHHHHHhCCCeeEEeeccCc
Q psy13396          7 PESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNG-DIYARYISYNSPNELKKDLIKRCPQKIDLGAIYDI   85 (328)
Q Consensus         7 ~~~~~~~~~~YY~~~fp~~~~~~WL~y~~~~~~~~REfaf~~~~-~~y~R~~sF~~~~el~~~l~~~~P~~i~igavy~~   85 (328)
                      .++.++.++.||++.||++.+.+||    +.++++|||||++++ ++|+||+||+|.+||+++|++++|.|+|||+|||.
T Consensus         4 ~~~~~~~~~~yY~~~fp~~~~~~~~----~~~~~~REf~f~~~~~~~~~R~~sF~s~~eL~~~l~~~~P~~vy~saayy~   79 (346)
T d1v33a_           4 REVTREERKNFYTNEWKVKDIPDFI----VKTLELREFGFDHSGEGPSDRKNQYTDIRDLEDYIRATAPYAVYSSVALYE   79 (346)
T ss_dssp             CCCCHHHHHHHHHHTCCGGGSCHHH----HTTGGGCCEEEESSSSCSCEEEECCSSHHHHHHHHHHHCCSEEEEESEEEE
T ss_pred             hhhCHHHHHHHHHhhCCchhhhhhh----cccccccceEEEecCCCccchhhccCCHHHHHHHHHhhCCCeEEEeccccc
Confidence            5677899999999999999999999    688999999999875 58999999999999999999999999999999999


Q ss_pred             CcccccCCCCCCCCccceEEeecCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHHhhhcCCceeEEEEeCCCeeEEE
Q psy13396         86 CPKDHLQHSVFTPKMKELVFDIDMTDYDDVRNCCSGADICEKCWRYMSIACKILDTALREDFDFQLLLWVFSGRRGIHCW  165 (328)
Q Consensus        86 ~P~~~~~kg~~~p~grELVFDID~~dyd~vr~Cc~~~~iC~kCw~~~~~a~klld~~L~~dFGf~~i~~vFSG~RG~H~w  165 (328)
                      .|.+  .++|   +|+||||||||||||++|+||+++.||++||.+|+.|+++|+.+|++||||+|++||||| ||||||
T Consensus        80 ~P~~--~k~~---~~~ELVFDID~ddy~~~r~cc~~~~iC~kCw~~~~~av~~L~~~L~~DFGf~~i~~vFSG-RG~H~w  153 (346)
T d1v33a_          80 KPQE--MEGW---LGTELVFDIDAKDLPLRRCEHEPGTVCPICLNDAKEIVRDTVIILREELGFNDIHIIYSG-RGYHIR  153 (346)
T ss_dssp             ETTT--TEEE---EEECEEEEEEGGGCSSCSSCSCTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEECS-SEEEEE
T ss_pred             ChhH--cCCc---cccccccccccccCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHhcCCchhheeeecC-CeEEEE
Confidence            9965  5676   699999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             EechhhhcCChHHHHHHHhhhhhccCCcceee---eecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHhcc
Q psy13396        166 VCDEAALALDGRGRSCLAEYMSVLTANPVKKV---FLTGDVLHPHLKRAKLIIEDQFEKLLEEQELLSTKERQTKVLGLV  242 (328)
Q Consensus       166 V~D~~a~~l~~~~R~~Iv~Yl~~~~~~~~k~v---~~~~~~~hp~~~ra~~il~~~f~~~l~~q~~l~~~~~~~~lL~~i  242 (328)
                      |||++|++|++++|++||+||++.+++.....   .+.....++......+.+...+..+       ........++..-
T Consensus       154 V~D~~ar~L~s~~RreIv~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  226 (346)
T d1v33a_         154 VLDEWALKLDSKSRERILSFVSASEIEDVEEFRKLLLNKRGWFVLNHGYPRAFRLRFGYF-------ILRIKLPHLINAG  226 (346)
T ss_dssp             ECCHHHHTCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHCGGGGGCSSSHHHHHHHHHHHH-------HTTCCHHHHHHTT
T ss_pred             ecCHHHHhccHHHHHHHHHHHhhcccccccccccccccccccccccchhHHHHHHHHHhh-------hhHhhhhhhhhhh
Confidence            99999999999999999999999998762211   1001000111111112222222222       1111122222211


Q ss_pred             CChHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH-hhccccchHHHHHHHHHHHHHHhhcccCcCcccCCCccccCCCccc
Q psy13396        243 SNGDIRAEIEKEWTRIGPGQDVEKWDRLVAIIK-HHQAKNSDRKLKYAIEEILLELAYPRLDIHVSKGVNHLLKSPFCVH  321 (328)
Q Consensus       243 pd~~~~~~l~~~~~~~~~~~s~~~w~~l~~~~~-~~~~~~~~~~~~~~~~eiv~~~~yPRlD~~VSk~~nHLLKsPFcvH  321 (328)
                      -.+.....+.+.        ..+.|+....... ..............+.+++++++|||||+|||+|+|||||+|||||
T Consensus       227 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~prlD~~VT~d~~rLlR~PfSlH  298 (346)
T d1v33a_         227 IRKSIAKSILKS--------KEEIYEEFVRKAILAAFPQGVGIESLAKLFALSTRFSKSYFDGRVTVDLKRILRLPSTLH  298 (346)
T ss_dssp             CCHHHHHHHHHT--------HHHHHHHTTTTCCGGGSCTTCHHHHHHHHHHHHHHHHHTSSCHHHHHCTTCEEECTTSEE
T ss_pred             hhHHHHHHHhhh--------hHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHhhccCcCCCccCCCCCceeeCCCCcc
Confidence            111111111110        1111111110000 0000111223445678999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy13396        322 PKTGKIC  328 (328)
Q Consensus       322 pkTGrVc  328 (328)
                      ||||+||
T Consensus       299 ~KTGlv~  305 (346)
T d1v33a_         299 SKVGLIA  305 (346)
T ss_dssp             TTTTEEC
T ss_pred             CCCCCeE
Confidence            9999988

>d1zt2a1 d.264.1.1 (A:3-329) DNA primase small subunit PriA {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: Prim-pol domain
superfamily: Prim-pol domain
family: PriA-like
domain: DNA primase small subunit PriA
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=5.6e-53  Score=405.35  Aligned_cols=174  Identities=26%  Similarity=0.388  Sum_probs=151.0

Q ss_pred             CCCchhhhhHHHHHhhhcCCccccccccccCCCCCCCCceeEEEecC-CeeeccccCCCHHHHHHHHHH-hCCCeeEEee
Q psy13396          4 KYDPESLTEMLPFYYKRIFPYGPYLRWLFYGNLDNFRKREFSFTLNG-DIYARYISYNSPNELKKDLIK-RCPQKIDLGA   81 (328)
Q Consensus         4 ~~~~~~~~~~~~~YY~~~fp~~~~~~WL~y~~~~~~~~REfaf~~~~-~~y~R~~sF~~~~el~~~l~~-~~P~~i~iga   81 (328)
                      ..+.++++++|+.||++..+.          .|+++++|||||+..+ +.|+||+||+|.+||+++|.+ ++|.|+|+|+
T Consensus         6 ~~~~~~l~~~f~~YY~~~~l~----------~P~~~~~REf~f~~~~~~~~~R~~sf~~~~eL~~~L~~~~~P~~vy~St   75 (327)
T d1zt2a1           6 QGQTNLIKSFFRNYYLNAELE----------LPKDMELREFALQPFGSDTYVRHLSFSSSEELRDYLVNRNLPLHLFYSS   75 (327)
T ss_dssp             CCCCCHHHHHHHHHHHHCCCC----------CCTTGGGSCEEEEETTCSSCCCCBCCSSHHHHHHHHHTTCCEEEEEEES
T ss_pred             hhhHHHHHHHHHHHHhhCCCC----------CCCCCccceEEEEecCCCceeeeccCCCHHHHHHHHHhccCCceEEECc
Confidence            568899999999999997553          4899999999999765 579999999999999999975 5799999999


Q ss_pred             ccCcCccccc--CCCCCCCCccceEEeecCCCCCCcc---c--cCCcchhhHHHHH-----------------HHH-HHH
Q psy13396         82 IYDICPKDHL--QHSVFTPKMKELVFDIDMTDYDDVR---N--CCSGADICEKCWR-----------------YMS-IAC  136 (328)
Q Consensus        82 vy~~~P~~~~--~kg~~~p~grELVFDID~~dyd~vr---~--Cc~~~~iC~kCw~-----------------~~~-~a~  136 (328)
                      +||..|.+++  +|||   +|+|||||||++|+++++   +  ||++..+|.+||.                 .++ ++.
T Consensus        76 ayy~~P~~~~m~~K~w---~g~dLvFDID~d~l~~~~~~~~c~~c~~~~~~~~c~~~~~~~~e~~~~~~~~l~~a~~~~~  152 (327)
T d1zt2a1          76 ARYQLPSARNMEEKAW---MGSDLLFDIDADHLCKLRSIRFCPVCGNAVVSEKCERDNVETLEYVEMTSECIKRGLEQTR  152 (327)
T ss_dssp             BCCSCTTCSSHHHHCC---CCBCEEEEBCHHHHHCCEEEEECTTTCCBCSSSEETTTTEECEEEEECCHHHHHHHHHHHH
T ss_pred             ccccCcccccccccCc---ccchhhcccccccCcccccccccccccccccchhhccchhhhHhHHHHHHHHHHHHHHHHH
Confidence            9999999876  6888   599999999999987765   3  4888877777765                 355 466


Q ss_pred             HHHHHHHhhhcCCceeEEEEeCCCeeEEEE-echhhhcCChHHHHHHHhhhhhccCC
Q psy13396        137 KILDTALREDFDFQLLLWVFSGRRGIHCWV-CDEAALALDGRGRSCLAEYMSVLTAN  192 (328)
Q Consensus       137 klld~~L~~dFGf~~i~~vFSG~RG~H~wV-~D~~a~~l~~~~R~~Iv~Yl~~~~~~  192 (328)
                      +|++ +|++||||+++ +|||||||||||| +|++++.|++++|++||+|+++.+..
T Consensus       153 ~L~d-~L~~dfGf~~~-i~FSG~RGfHv~V~~d~~~~~L~~~~Rreiv~Yi~g~~~~  207 (327)
T d1zt2a1         153 NLVE-ILEDDFGLKPK-VYFSGNRGFHVQVDCYGNCALLDSDERKEIAEYVMGIGVP  207 (327)
T ss_dssp             HHHH-HHHHTTCCCCE-EEECSSSSEEEEECCCSGGGGCCHHHHHHHHHHHTTSSCC
T ss_pred             HHHH-HHHhhcCceeE-EEEeCCceEEEEeCCcHHhhhCCHHHHHHHHHHHHhcCCc
Confidence            6776 99999999996 5699999999999 79999999999999999999997743