Psyllid ID: psy13415

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEKK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMlssdwpfgrfyckVTQFVAVLSICASVFTLMAISVDRKkkkkkkeekk
Flexible Loop (DISEMBL)
MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTlmaisvdrkkkkkkkeekk
Low Complexity Region (SEG)
MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRkkkkkkkeekk
Disordered region (IsUnstruct)
***VTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAIS**************
Disordered Region (DISOPRED)
MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK*
Disordered Region (DISEMBL)
MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISV*************
Disordered Region (DISPRO)
*RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKK*******
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
P30975	519	Tachykinin-like peptides	yes	N/A	0.860	0.131	0.823	3e-28
P30974	504	Tachykinin-like peptides	no	N/A	0.860	0.134	0.632	2e-20
P16177	452	Neuromedin-K receptor OS=	yes	N/A	0.860	0.150	0.5	1e-14
P47937	452	Neuromedin-K receptor OS=	yes	N/A	0.860	0.150	0.485	4e-14
O97512	467	Neuromedin-K receptor OS=	yes	N/A	0.860	0.145	0.485	5e-14
P29371	465	Neuromedin-K receptor OS=	yes	N/A	0.860	0.146	0.485	6e-14
Q5DUB1	407	Substance-P receptor OS=M	N/A	N/A	0.860	0.167	0.441	6e-13
Q5DUB3	407	Substance-P receptor OS=C	no	N/A	0.860	0.167	0.441	7e-13
P30547	407	Substance-P receptor OS=C	yes	N/A	0.860	0.167	0.441	7e-13
P25103	407	Substance-P receptor OS=H	no	N/A	0.860	0.167	0.441	8e-13

>sp|P30975|TLR2_DROME Tachykinin-like peptides receptor 99D OS=Drosophila melanogaster GN=Takr99D PE=2 SV=2

 Score =  123 bits (309), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/68 (82%), Positives = 65/68 (95%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYF+VNLS+ADAMVS+LNVTFN+ YML SDWPFG FYCK++QF+A+LSICASVFT
Sbjct: 132 MRTVTNYFIVNLSIADAMVSSLNVTFNYYYMLDSDWPFGEFYCKLSQFIAMLSICASVFT 191

Query: 61  LMAISVDR 68
           LMAIS+DR
Sbjct: 192 LMAISIDR 199

Probable receptor for tachykinin-like peptides.
Drosophila melanogaster (taxid: 7227)

>sp|P30974|TLR1_DROME Tachykinin-like peptides receptor 86C OS=Drosophila melanogaster GN=Takr86C PE=2 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 56/68 (82%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYFL+NLS+AD ++S+LN  FNF++ML+SDWPFG  YC +  FVA +++  SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LMAISVDR 68
           L+AIS DR
Sbjct: 174 LVAISFDR 181

May play a role in neurogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|P16177|NK3R_RAT Neuromedin-K receptor OS=Rattus norvegicus GN=Tacr3 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 48/68 (70%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYFLVNL+ +DA V+  N   NF+Y L S+W FG  YC+   F  + ++ AS+++
Sbjct: 103 MRTVTNYFLVNLAFSDASVAAFNTLINFIYGLHSEWYFGANYCRFQNFFPITAVFASIYS 162

Query: 61  LMAISVDR 68
           + AI+VDR
Sbjct: 163 MTAIAVDR 170

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: neuromedin-K > substance K > substance P.

Rattus norvegicus (taxid: 10116)

>sp|P47937|NK3R_MOUSE Neuromedin-K receptor OS=Mus musculus GN=Tacr3 PE=2 SV=2

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/68 (48%), Positives = 48/68 (70%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYFLVNL+ +DA V+  N   NF+Y + S+W FG  YC+   F  + ++ AS+++
Sbjct: 103 MRTVTNYFLVNLAFSDASVAAFNTLVNFIYGVHSEWYFGANYCRFQNFFPITAVFASIYS 162

Query: 61  LMAISVDR 68
           + AI+VDR
Sbjct: 163 MTAIAVDR 170

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Mus musculus (taxid: 10090)

>sp|O97512|NK3R_RABIT Neuromedin-K receptor OS=Oryctolagus cuniculus GN=TACR3 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/68 (48%), Positives = 48/68 (70%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYFLVNL+ +DA ++  N   NF+Y L S+W FG  YC+   F  + ++ AS+++
Sbjct: 118 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 177

Query: 61  LMAISVDR 68
           + AI+VDR
Sbjct: 178 MTAIAVDR 185

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Oryctolagus cuniculus (taxid: 9986)

>sp|P29371|NK3R_HUMAN Neuromedin-K receptor OS=Homo sapiens GN=TACR3 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/68 (48%), Positives = 48/68 (70%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYFLVNL+ +DA ++  N   NF+Y L S+W FG  YC+   F  + ++ AS+++
Sbjct: 116 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 175

Query: 61  LMAISVDR 68
           + AI+VDR
Sbjct: 176 MTAIAVDR 183

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: neuromedin-K > substance K > substance P.

Homo sapiens (taxid: 9606)

>sp|Q5DUB1|NK1R_MERUN Substance-P receptor OS=Meriones unguiculatus GN=TACR1 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 47/68 (69%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYFLVNL+ A+A ++  N   NF Y + ++W +G FYCK   F  + ++ AS+++
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122

Query: 61  LMAISVDR 68
           + A++ DR
Sbjct: 123 MTAVAFDR 130

This is a receptor for the tachykinin neuropeptide substance P. It is probably associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Meriones unguiculatus (taxid: 10047)

>sp|Q5DUB3|NK1R_CANFA Substance-P receptor OS=Canis familiaris GN=TACR1 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 47/68 (69%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYFLVNL+ A+A ++  N   NF Y + ++W +G FYCK   F  + ++ AS+++
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122

Query: 61  LMAISVDR 68
           + A++ DR
Sbjct: 123 MTAVAFDR 130

This is a receptor for the tachykinin neuropeptide substance P. It is probably associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Canis familiaris (taxid: 9615)

>sp|P30547|NK1R_CAVPO Substance-P receptor OS=Cavia porcellus GN=TACR1 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 47/68 (69%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYFLVNL+ A+A ++  N   NF Y + ++W +G FYCK   F  + ++ AS+++
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122

Query: 61  LMAISVDR 68
           + A++ DR
Sbjct: 123 MTAVAFDR 130

This is a receptor for the tachykinin neuropeptide substance P. It is probably associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: substance P > substance K > neuromedin-K.

Cavia porcellus (taxid: 10141)

>sp|P25103|NK1R_HUMAN Substance-P receptor OS=Homo sapiens GN=TACR1 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 47/68 (69%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYFLVNL+ A+A ++  N   NF Y + ++W +G FYCK   F  + ++ AS+++
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122

Query: 61  LMAISVDR 68
           + A++ DR
Sbjct: 123 MTAVAFDR 130

This is a receptor for the tachykinin neuropeptide substance P. It is probably associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: substance P > substance K > neuromedin-K.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
195503090	554	GE10408 [Drosophila yakuba] gi|194184607	0.860	0.122	0.823	3e-27
195574933	552	GD17519 [Drosophila simulans] gi|1942013	0.860	0.123	0.823	4e-27
322799663	151	hypothetical protein SINV_00085 [Solenop	0.860	0.450	0.823	4e-27
194905870	552	GG11982 [Drosophila erecta] gi|190655912	0.860	0.123	0.823	4e-27
195159208	531	GL13493 [Drosophila persimilis] gi|19411	0.860	0.128	0.808	4e-27
390176845	533	GA20661 [Drosophila pseudoobscura pseudo	0.860	0.127	0.808	5e-27
332024897	149	Tachykinin-like peptide receptor 99D [Ac	0.860	0.456	0.823	5e-27
157114693	416	tachykinin receptor [Aedes aegypti]	0.860	0.163	0.838	5e-27
194746082	526	GF16216 [Drosophila ananassae] gi|190628	0.860	0.129	0.823	5e-27
442621784	564	Tachykinin-like receptor at 99D, isoform	0.860	0.120	0.823	6e-27

>gi|195503090|ref|XP_002098506.1| GE10408 [Drosophila yakuba] gi|194184607|gb|EDW98218.1| GE10408 [Drosophila yakuba]

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/68 (82%), Positives = 65/68 (95%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYF+VNLS+ADAMVS+LNVTFN+ YML SDWPFG FYCK++QF+A+LSICASVFT
Sbjct: 132 MRTVTNYFIVNLSIADAMVSSLNVTFNYYYMLDSDWPFGEFYCKLSQFIAMLSICASVFT 191

Query: 61  LMAISVDR 68
           LMAIS+DR
Sbjct: 192 LMAISIDR 199

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195574933|ref|XP_002105437.1| GD17519 [Drosophila simulans] gi|194201364|gb|EDX14940.1| GD17519 [Drosophila simulans]

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/68 (82%), Positives = 65/68 (95%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYF+VNLS+ADAMVS+LNVTFN+ YML SDWPFG FYCK++QF+A+LSICASVFT
Sbjct: 132 MRTVTNYFIVNLSIADAMVSSLNVTFNYYYMLDSDWPFGEFYCKLSQFIAMLSICASVFT 191

Query: 61  LMAISVDR 68
           LMAIS+DR
Sbjct: 192 LMAISIDR 199

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799663|gb|EFZ20918.1| hypothetical protein SINV_00085 [Solenopsis invicta]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/68 (82%), Positives = 64/68 (94%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYFLVNLS+ADAMVSTLNVTFN+ YML+S WPFG  YCK++QF+AVL+ICASVFT
Sbjct: 84  MRTVTNYFLVNLSIADAMVSTLNVTFNYTYMLNSHWPFGTLYCKISQFIAVLTICASVFT 143

Query: 61  LMAISVDR 68
           LMAIS+DR
Sbjct: 144 LMAISIDR 151

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194905870|ref|XP_001981274.1| GG11982 [Drosophila erecta] gi|190655912|gb|EDV53144.1| GG11982 [Drosophila erecta]

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/68 (82%), Positives = 65/68 (95%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYF+VNLS+ADAMVS+LNVTFN+ YML SDWPFG FYCK++QF+A+LSICASVFT
Sbjct: 132 MRTVTNYFIVNLSIADAMVSSLNVTFNYYYMLDSDWPFGEFYCKLSQFIAMLSICASVFT 191

Query: 61  LMAISVDR 68
           LMAIS+DR
Sbjct: 192 LMAISIDR 199

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195159208|ref|XP_002020474.1| GL13493 [Drosophila persimilis] gi|194117243|gb|EDW39286.1| GL13493 [Drosophila persimilis]

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/68 (80%), Positives = 64/68 (94%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYF+VNLS+ADAMVS+LNVTFN+ YML SDWPFG  YCK++QF+A+LSICASVFT
Sbjct: 131 MRTVTNYFIVNLSIADAMVSSLNVTFNYYYMLDSDWPFGELYCKISQFIAMLSICASVFT 190

Query: 61  LMAISVDR 68
           LMAIS+DR
Sbjct: 191 LMAISIDR 198

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390176845|ref|XP_001357622.3| GA20661 [Drosophila pseudoobscura pseudoobscura] gi|388858812|gb|EAL26756.3| GA20661 [Drosophila pseudoobscura pseudoobscura]

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/68 (80%), Positives = 64/68 (94%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYF+VNLS+ADAMVS+LNVTFN+ YML SDWPFG  YCK++QF+A+LSICASVFT
Sbjct: 131 MRTVTNYFIVNLSIADAMVSSLNVTFNYYYMLDSDWPFGELYCKISQFIAMLSICASVFT 190

Query: 61  LMAISVDR 68
           LMAIS+DR
Sbjct: 191 LMAISIDR 198

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024897|gb|EGI65085.1| Tachykinin-like peptide receptor 99D [Acromyrmex echinatior]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/68 (82%), Positives = 64/68 (94%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYFLVNLS+ADAMVSTLNVTFN+ YML+S WPFG  YCK++QF+AVL+ICASVFT
Sbjct: 82  MRTVTNYFLVNLSIADAMVSTLNVTFNYTYMLNSHWPFGTLYCKISQFIAVLTICASVFT 141

Query: 61  LMAISVDR 68
           LMAIS+DR
Sbjct: 142 LMAISIDR 149

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157114693|ref|XP_001652376.1| tachykinin receptor [Aedes aegypti]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/68 (83%), Positives = 64/68 (94%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYFLVNLS+ADAMVSTLNVTFN+ YML+ DWPFG  YCK++QFVA+LSICASVFT
Sbjct: 96  MRTVTNYFLVNLSIADAMVSTLNVTFNYTYMLNLDWPFGTLYCKISQFVAILSICASVFT 155

Query: 61  LMAISVDR 68
           LMAIS+DR
Sbjct: 156 LMAISIDR 163

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194746082|ref|XP_001955513.1| GF16216 [Drosophila ananassae] gi|190628550|gb|EDV44074.1| GF16216 [Drosophila ananassae]

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/68 (82%), Positives = 64/68 (94%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYF+VNLS+ADAMVS+LNVTFN+ YML  DWPFG FYCKV+QF+A+LSICASVFT
Sbjct: 129 MRTVTNYFIVNLSIADAMVSSLNVTFNYYYMLDGDWPFGEFYCKVSQFIAMLSICASVFT 188

Query: 61  LMAISVDR 68
           LMAIS+DR
Sbjct: 189 LMAISIDR 196

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442621784|ref|NP_001263092.1| Tachykinin-like receptor at 99D, isoform C [Drosophila melanogaster] gi|440218047|gb|AGB96471.1| Tachykinin-like receptor at 99D, isoform C [Drosophila melanogaster]

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/68 (82%), Positives = 65/68 (95%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYF+VNLS+ADAMVS+LNVTFN+ YML SDWPFG FYCK++QF+A+LSICASVFT
Sbjct: 132 MRTVTNYFIVNLSIADAMVSSLNVTFNYYYMLDSDWPFGEFYCKLSQFIAMLSICASVFT 191

Query: 61  LMAISVDR 68
           LMAIS+DR
Sbjct: 192 LMAISIDR 199

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
FB|FBgn0004622	519	Takr99D "Tachykinin-like recep	0.860	0.131	0.823	4e-27
FB|FBgn0004841	504	Takr86C "Tachykinin-like recep	0.860	0.134	0.632	8.8e-20
ZFIN|ZDB-GENE-090312-188	376	tacr2 "tachykinin receptor 2"	0.860	0.180	0.514	2.5e-15
ZFIN|ZDB-GENE-090312-106	399	tacr3a "tachykinin receptor 3a	0.860	0.170	0.514	2.3e-14
UNIPROTKB|J9NS65	350	TACR3 "Uncharacterized protein	0.860	0.194	0.485	2.5e-14
UNIPROTKB|F1N2X0	463	TACR3 "Uncharacterized protein	0.860	0.146	0.5	2.6e-14
UNIPROTKB|F1NJ82	419	TACR3 "Uncharacterized protein	0.860	0.162	0.485	2.6e-14
UNIPROTKB|F1S112	360	TACR3 "Uncharacterized protein	0.860	0.188	0.485	2.8e-14
RGD|3810	452	Tacr3 "tachykinin receptor 3"	0.860	0.150	0.5	3.2e-14
ZFIN|ZDB-GENE-060526-185	413	tacr1a "tachykinin receptor 1a	0.860	0.164	0.470	4.2e-14

FB|FBgn0004622 Takr99D "Tachykinin-like receptor at 99D" [Drosophila melanogaster (taxid:7227)]

 Score = 309 (113.8 bits), Expect = 4.0e-27, P = 4.0e-27
 Identities = 56/68 (82%), Positives = 65/68 (95%)

Query:     1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
             MRTVTNYF+VNLS+ADAMVS+LNVTFN+ YML SDWPFG FYCK++QF+A+LSICASVFT
Sbjct:   132 MRTVTNYFIVNLSIADAMVSSLNVTFNYYYMLDSDWPFGEFYCKLSQFIAMLSICASVFT 191

Query:    61 LMAISVDR 68
             LMAIS+DR
Sbjct:   192 LMAISIDR 199

GO:0005886 "plasma membrane" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0007217 "tachykinin receptor signaling pathway" evidence=ISS;IDA

GO:0004995 "tachykinin receptor activity" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

FB|FBgn0004841 Takr86C "Tachykinin-like receptor at 86C" [Drosophila melanogaster (taxid:7227)]

 Score = 242 (90.2 bits), Expect = 8.8e-20, P = 8.8e-20
 Identities = 43/68 (63%), Positives = 56/68 (82%)

Query:     1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
             MRTVTNYFL+NLS+AD ++S+LN  FNF++ML+SDWPFG  YC +  FVA +++  SVFT
Sbjct:   114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query:    61 LMAISVDR 68
             L+AIS DR
Sbjct:   174 LVAISFDR 181

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0004995 "tachykinin receptor activity" evidence=ISS;IDA

GO:0007217 "tachykinin receptor signaling pathway" evidence=ISS;IDA

GO:0008188 "neuropeptide receptor activity" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-090312-188 tacr2 "tachykinin receptor 2" [Danio rerio (taxid:7955)]

 Score = 198 (74.8 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 35/68 (51%), Positives = 50/68 (73%)

Query:     1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
             MRTVTNYF+VNL+ +DA ++T N  FNFVY L +DW FG  YCK   F  + ++ +S+++
Sbjct:    65 MRTVTNYFIVNLAFSDASMATFNTVFNFVYALHNDWYFGLGYCKFQNFFPITAMFSSIYS 124

Query:    61 LMAISVDR 68
             + AI+VDR
Sbjct:   125 MAAIAVDR 132

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

ZFIN|ZDB-GENE-090312-106 tacr3a "tachykinin receptor 3a" [Danio rerio (taxid:7955)]

 Score = 190 (71.9 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 35/68 (51%), Positives = 46/68 (67%)

Query:     1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
             MRTVTNYFL+NL+ +DA ++  N   NFVY    DW FG  YCK   F  V S+ AS+++
Sbjct:    56 MRTVTNYFLLNLAFSDASMAAFNTLINFVYATHGDWYFGEAYCKFHNFFPVTSVFASIYS 115

Query:    61 LMAISVDR 68
             + AI+VDR
Sbjct:   116 MSAIAVDR 123

GO:0004995 "tachykinin receptor activity" evidence=IEA;IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007217 "tachykinin receptor signaling pathway" evidence=IDA

GO:0007268 "synaptic transmission" evidence=IDA

GO:0007218 "neuropeptide signaling pathway" evidence=IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|J9NS65 TACR3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 188 (71.2 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 33/68 (48%), Positives = 48/68 (70%)

Query:     1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
             MRTVTNYFLVNL+ +DA ++  N   NF+Y L S+W FG  YC+   F  + ++ AS+++
Sbjct:     1 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 60

Query:    61 LMAISVDR 68
             + AI+VDR
Sbjct:    61 MTAIAVDR 68

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004995 "tachykinin receptor activity" evidence=IEA

UNIPROTKB|F1N2X0 TACR3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 191 (72.3 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 34/68 (50%), Positives = 48/68 (70%)

Query:     1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
             MRTVTNYFLVNL+ +DA ++  N   NF+Y L S+W FG  YC+   F  + ++ AS+++
Sbjct:   114 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 173

Query:    61 LMAISVDR 68
             + AISVDR
Sbjct:   174 MTAISVDR 181

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004995 "tachykinin receptor activity" evidence=IEA

UNIPROTKB|F1NJ82 TACR3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 33/68 (48%), Positives = 48/68 (70%)

Query:     1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
             MRTVTNYFLVNL+ +DA ++  N   NF+Y L S+W FG  YC+   F  + ++ AS+++
Sbjct:    69 MRTVTNYFLVNLAFSDASMAAFNTLINFIYALHSEWYFGEAYCRFHNFFPITAVFASIYS 128

Query:    61 LMAISVDR 68
             + AI+VDR
Sbjct:   129 MTAIAVDR 136

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1S112 TACR3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 188 (71.2 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 33/68 (48%), Positives = 48/68 (70%)

Query:     1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
             MRTVTNYFLVNL+ +DA ++  N   NF+Y L S+W FG  YC+   F  + ++ AS+++
Sbjct:   115 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 174

Query:    61 LMAISVDR 68
             + AI+VDR
Sbjct:   175 MTAIAVDR 182

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004995 "tachykinin receptor activity" evidence=IEA

RGD|3810 Tacr3 "tachykinin receptor 3" [Rattus norvegicus (taxid:10116)]

 Score = 190 (71.9 bits), Expect = 3.2e-14, P = 3.2e-14
 Identities = 34/68 (50%), Positives = 48/68 (70%)

Query:     1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
             MRTVTNYFLVNL+ +DA V+  N   NF+Y L S+W FG  YC+   F  + ++ AS+++
Sbjct:   103 MRTVTNYFLVNLAFSDASVAAFNTLINFIYGLHSEWYFGANYCRFQNFFPITAVFASIYS 162

Query:    61 LMAISVDR 68
             + AI+VDR
Sbjct:   163 MTAIAVDR 170

GO:0004995 "tachykinin receptor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007217 "tachykinin receptor signaling pathway" evidence=IDA

GO:0007568 "aging" evidence=IEP

GO:0010460 "positive regulation of heart rate" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEP;IDA

GO:0032590 "dendrite membrane" evidence=IDA

GO:0032809 "neuronal cell body membrane" evidence=IDA

GO:0042053 "regulation of dopamine metabolic process" evidence=IDA

GO:0042220 "response to cocaine" evidence=IMP

GO:0042538 "hyperosmotic salinity response" evidence=IDA

GO:0043278 "response to morphine" evidence=IEP

GO:0045777 "positive regulation of blood pressure" evidence=IDA

GO:0060259 "regulation of feeding behavior" evidence=IDA

GO:0070474 "positive regulation of uterine smooth muscle contraction" evidence=IDA

ZFIN|ZDB-GENE-060526-185 tacr1a "tachykinin receptor 1a" [Danio rerio (taxid:7955)]

 Score = 188 (71.2 bits), Expect = 4.2e-14, P = 4.2e-14
 Identities = 32/68 (47%), Positives = 49/68 (72%)

Query:     1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
             MRTVTNYFLVNL+ A+A +S  N   NFVY + ++W FG +YC+   F  + ++ AS+++
Sbjct:    69 MRTVTNYFLVNLAFAEASMSAFNTVINFVYSVHNEWYFGLYYCRFHNFFPIAAVFASIYS 128

Query:    61 LMAISVDR 68
             + AI++DR
Sbjct:   129 MTAIALDR 136

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P30975	TLR2_DROME	No assigned EC number	0.8235	0.8607	0.1310	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	79
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	8e-21
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	9e-05

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 81.6 bits (202), Expect = 8e-21
 Identities = 28/68 (41%), Positives = 42/68 (61%)

Query: 1  MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
          +RT TN FL+NL++AD +       +   Y++  DWPFG   CK+  F+ V++  AS+  
Sbjct: 9  LRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNGYASILL 68

Query: 61 LMAISVDR 68
          L AIS+DR
Sbjct: 69 LTAISIDR 76

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 38.2 bits (89), Expect = 9e-05
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 2   RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTL 61
           +T  + +L+NL+++D ++  + + F   Y +   W FG F CK+   +  +    S+  +
Sbjct: 71  KTPMDIYLLNLAVSD-LLFVMTLPFQIYYYILFQWSFGEFACKIVSGLYYIGFYNSMNFI 129

Query: 62  MAISVDR 68
             +SVDR
Sbjct: 130 TVMSVDR 136

Length = 335

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
KOG4219|consensus	423		99.88
PHA03234	338	DNA packaging protein UL33; Provisional	99.84
KOG4220|consensus	503		99.79
PHA02834	323	chemokine receptor-like protein; Provisional	99.76
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.74
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.74
PHA03235	409	DNA packaging protein UL33; Provisional	99.68
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.68
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	99.22
KOG2087|consensus	363		98.86
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	98.58
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	98.36
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	98.07
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	97.35
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	97.33
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	96.08
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	95.36
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	94.92
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	94.38
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	93.82
PF02175	236	7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept	91.65
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	91.25
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	91.22
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	90.89
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	89.59
PF06681	226	DUF1182: Protein of unknown function (DUF1182); In	88.09

>KOG4219|consensus

Probab=99.88  E-value=7.5e-23  Score=127.61  Aligned_cols=79  Identities=47%  Similarity=0.837  Sum_probs=75.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccC
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEKK   79 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~~   79 (79)
                      ||+.+|+|++|||++|+..+++..++.......+.|.+|...|++..++..+...+|+++|++||+|||+||.+|+++|
T Consensus        66 MRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r  144 (423)
T KOG4219|consen   66 MRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR  144 (423)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC
Confidence            6899999999999999999999999988888888999999999999999999999999999999999999999999876

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.84  E-value=8.9e-21  Score=117.83  Aligned_cols=76  Identities=21%  Similarity=0.332  Sum_probs=67.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|+++|+|++|||++|++.+ ..+|...... .++|.+|+..|++.++......++|+++|++||+|||.+|++|.++
T Consensus        65 ~rt~tn~fi~NLAvaDLL~~-l~lp~~~~~~-~~~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~  140 (338)
T PHA03234         65 KHNATSFYLITLFASDFLHM-LCVFFLTLNR-EALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKN  140 (338)
T ss_pred             cccHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhh
Confidence            47999999999999999996 4566655443 3579999999999999999999999999999999999999999864

>KOG4220|consensus

Probab=99.79  E-value=1.7e-20  Score=117.81  Aligned_cols=79  Identities=29%  Similarity=0.517  Sum_probs=76.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccC
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEKK   79 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~~   79 (79)
                      |||..|||+++||++|+++|.+.+|+...+...+.|.+|...|+++..+.++..-+|+++|..|++|||.+|.||+.+|
T Consensus        61 LqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYr  139 (503)
T KOG4220|consen   61 LQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYR  139 (503)
T ss_pred             eeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceeeccccccc
Confidence            6889999999999999999999999999999999999999999999999999999999999999999999999999764

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.76  E-value=5.3e-18  Score=104.70  Aligned_cols=75  Identities=25%  Similarity=0.459  Sum_probs=65.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          2 RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         2 ~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +++.|+++.|||++|++. ...+|..+.... ++|.+|+..|++.++.......+|++++++||+|||.+|++|.+.
T Consensus        59 ~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~  133 (323)
T PHA02834         59 MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKI  133 (323)
T ss_pred             cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhc
Confidence            457899999999999986 568898765444 579999999999999988899999999999999999999999864

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.74  E-value=1.4e-17  Score=97.61  Aligned_cols=78  Identities=33%  Similarity=0.570  Sum_probs=71.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|++.++++.|||++|++.++...|........+.|..|+..|++..+........|.++++++++|||.+|++|.++
T Consensus        15 ~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~   92 (257)
T PF00001_consen   15 LRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISIDRYLAICHPLRY   92 (257)
T ss_dssp             G-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHTH
T ss_pred             CCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            468999999999999999998888887777766789999999999999999999999999999999999999999875

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.74  E-value=2.7e-17  Score=104.69  Aligned_cols=76  Identities=22%  Similarity=0.441  Sum_probs=68.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|+++|++++|||++|++.. ...|+++... .++|.+|+..|++..+......++++++++++++|||.+|++|.+.
T Consensus       128 lrt~t~i~llnLAisDLl~~-l~lPf~i~~~-~~~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~  203 (417)
T PHA02638        128 IKTITDIYIFNLAISDLIFV-IDFPFIIYNE-FDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISF  203 (417)
T ss_pred             CCCHhHHHHHHHHHHHHHHH-HHHHHHHHHH-hccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            57899999999999999874 6889887654 4679999999999999999999999999999999999999999864

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.68  E-value=1.9e-16  Score=100.67  Aligned_cols=74  Identities=16%  Similarity=0.213  Sum_probs=60.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          3 TVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         3 ~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +..+++++|||++|++. ++.+|+.+... ...|..|+..|++..+....+..+|++++++||+|||.+|++|.++
T Consensus        67 ~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~  140 (409)
T PHA03235         67 STPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRA  140 (409)
T ss_pred             CccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhc
Confidence            45689999999999987 56888776432 1223345789999999999999999999999999999999999754

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.68  E-value=6.1e-16  Score=95.54  Aligned_cols=77  Identities=23%  Similarity=0.483  Sum_probs=68.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|++.|+++.|||++|++.+ ...|........++|.+|+..|+...+.......+|.+++++|++|||.+|++|.++
T Consensus        70 ~~~~~~~ll~~laisDll~~-~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~  146 (335)
T PHA03087         70 IKTPMDIYLLNLAVSDLLFV-MTLPFQIYYYILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKS  146 (335)
T ss_pred             ccCchHHHHHHHHHHHHHHH-HhHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence            47999999999999999876 456766656666789999999999999999999999999999999999999999875

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.22  E-value=5.6e-11  Score=71.82  Aligned_cols=77  Identities=19%  Similarity=0.258  Sum_probs=65.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccC
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEKK   79 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~~   79 (79)
                      ||+|.++++..+|++|++.....+|......  +..+.....|-.+.+...+........+.+|++||+.||+.|.++|
T Consensus        21 Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~iaV~~P~~Y~   97 (257)
T PF10320_consen   21 LRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIMLAIAIDRLIAVCFPLRYR   97 (257)
T ss_pred             cccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEeehhhhh
Confidence            6999999999999999999877777665322  2345667789988888888889999999999999999999999875

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG2087|consensus

Probab=98.86  E-value=1.2e-08  Score=63.89  Aligned_cols=75  Identities=21%  Similarity=0.177  Sum_probs=58.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q psy13415          3 TVTNYFLVNLSLADAMVSTLNVTFNFVY-------MLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKK   75 (79)
Q Consensus         3 ~~~~~~~~nLa~~Dll~~~~~~p~~~~~-------~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p   75 (79)
                      ++...++.|||.+|+++++-..-+....       +-...|..+...|++.+++..+....|+++|+.+++||+++|+.|
T Consensus        57 ~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p  136 (363)
T KOG2087|consen   57 NSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYP  136 (363)
T ss_pred             cchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheecc
Confidence            4567789999999999886433322221       111234455678999999999999999999999999999999999


Q ss_pred             cc
Q psy13415         76 EE   77 (79)
Q Consensus        76 ~~   77 (79)
                      .+
T Consensus       137 ~~  138 (363)
T KOG2087|consen  137 FR  138 (363)
T ss_pred             cc
Confidence            87

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.58  E-value=8.8e-07  Score=54.70  Aligned_cols=79  Identities=13%  Similarity=0.199  Sum_probs=57.7

Q ss_pred             CCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C--cccch----hhhHhhHHHHHHhHHHHHHHHHHHHHHHHH
Q psy13415          1 MRT-VTNYFLVNLSLADAMVSTLNVTFNFVYMLSS---D--WPFGR----FYCKVTQFVAVLSICASVFTLMAISVDRKK   70 (79)
Q Consensus         1 l~~-~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~---~--~~~~~----~~C~~~~~~~~~~~~~s~~~l~~isidRy~   70 (79)
                      ||+ +.|.++..+|++|++......+.........   +  ++...    ....+........-..|.+..+.||..|+.
T Consensus        26 mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~~~~~S~WL~V~mA~iR~l  105 (318)
T PF10324_consen   26 MRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDIFRRISIWLGVLMALIRYL  105 (318)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            465 8999999999999999887777666443322   1  11111    122344567777888999999999999999


Q ss_pred             hhhcccccC
Q psy13415         71 KKKKKEEKK   79 (79)
Q Consensus        71 ~i~~p~~~~   79 (79)
                      ++..|.+.|
T Consensus       106 ~i~~p~~~~  114 (318)
T PF10324_consen  106 SIKFPMSSR  114 (318)
T ss_pred             HHHhhcccc
Confidence            999998754

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=98.36  E-value=9.8e-06  Score=47.73  Aligned_cols=73  Identities=15%  Similarity=0.148  Sum_probs=60.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q psy13415          3 TVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKK   75 (79)
Q Consensus         3 ~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p   75 (79)
                      +-.+.++.||.++|++.++..+.........++-..+...|..++++.+..-.++-+...+||+.-|..+.+|
T Consensus        34 ~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~  106 (201)
T PF11710_consen   34 SFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP  106 (201)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4456789999999999987665544444444555567789999999999999999999999999999999999

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.07  E-value=5.3e-05  Score=46.14  Aligned_cols=77  Identities=10%  Similarity=0.055  Sum_probs=53.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcccchhhhH-hhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYM-LSSDWPFGRFYCK-VTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~-~~~~~~~~~~~C~-~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|++.+++..|.+++|.+.++..+- +.... ..+.....+.... ..+.........+..+-..||++|+.||..|.++
T Consensus        24 ~~~sF~~l~~~~a~~n~i~~~~~l~-~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~~~~~liaiNRf~ai~fP~~y  102 (274)
T PF10328_consen   24 LRNSFGILCASQAIANIIICLIFLF-WVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGPLSHLLIAINRFCAIFFPFKY  102 (274)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeeHHHH
Confidence            4788999999999999998764332 22221 2222222222223 3366667777889999999999999999999864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=97.35  E-value=0.0023  Score=40.00  Aligned_cols=72  Identities=19%  Similarity=0.274  Sum_probs=56.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKE   76 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~   76 (79)
                      +|++.+-++.-++++|++..+..+...    ..+.-..+...|+++++.......++.+-.++||++=|..++++.
T Consensus        37 ~r~~~~rli~yl~~~~ll~~v~~~~~~----~~~~~~~~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~~~  108 (303)
T PF05462_consen   37 LRKPINRLIFYLSIANLLTNVASMIMT----LSPSAGENSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVKRY  108 (303)
T ss_pred             hCccHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEEcC
Confidence            478899999999999998765443221    113334457789999999999999999999999999999887653

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.33  E-value=0.0016  Score=40.20  Aligned_cols=76  Identities=9%  Similarity=0.166  Sum_probs=50.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HcC-CcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYM---LSS-DWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKE   76 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~---~~~-~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~   76 (79)
                      ++++.+-++.+-+++|++..+..........   ..+ ....++..-++................+.+|+.||.+|++|.
T Consensus        29 ~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~  108 (283)
T PF10323_consen   29 FKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPT  108 (283)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHhhhheEEeec
Confidence            3678888999999999998654322221111   111 112233334555566677777888899999999999999998

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.08  E-value=0.023  Score=35.07  Aligned_cols=69  Identities=17%  Similarity=0.216  Sum_probs=52.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhh
Q psy13415          2 RTVTNYFLVNLSLADAMVSTL-NVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKK   72 (79)
Q Consensus         2 ~~~~~~~~~nLa~~Dll~~~~-~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i   72 (79)
                      .+|++..+.+|++++.++.+. ++|........ + .+++..||+..+..-+.-..|+.+-+.+++-.-+.|
T Consensus         8 ~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~-~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItI   77 (265)
T PF03402_consen    8 LKPIDLILIHLALANILVLLSRGIPQTMAFFGW-K-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITI   77 (265)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc-c-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEE
Confidence            378999999999999988654 56644332222 2 368999999999999998899999999888554444

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.36  E-value=0.0043  Score=36.96  Aligned_cols=75  Identities=15%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKE   76 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~   76 (79)
                      +|+..+....||++++++..+..+.. ......+..+.++..|+..+...+.+..++...+.+.+++-|..+.++.
T Consensus        31 lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~  105 (242)
T PF00002_consen   31 LRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFFLASFFWMLVEAFYLYRLLVKVF  105 (242)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             hcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHHHHHHHHHHHHHHHhheeEEEee
Confidence            35667788899999999876543221 1111111111123359999999999999999999999999998886653

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=94.92  E-value=0.52  Score=29.52  Aligned_cols=75  Identities=15%  Similarity=0.157  Sum_probs=55.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcccc
Q psy13415          3 TVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEE   77 (79)
Q Consensus         3 ~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~   77 (79)
                      +|.+..+.+||+++++.....................+..++...+...+....|.+.-+++++--+..|.+..+
T Consensus        42 ~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~  116 (303)
T PF05296_consen   42 SPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSH  116 (303)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCc
Confidence            578899999999999876554443334444444445666788888888888889999999999977777766543

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.38  E-value=0.75  Score=28.97  Aligned_cols=75  Identities=9%  Similarity=0.122  Sum_probs=47.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHH---HHHHHHc--C--CcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q psy13415          3 TVTNYFLVNLSLADAMVSTLNVTF---NFVYMLS--S--DWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKK   75 (79)
Q Consensus         3 ~~~~~~~~nLa~~Dll~~~~~~p~---~~~~~~~--~--~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p   75 (79)
                      ....+.+....++.++-++.-.-.   ..+.+..  +  +...+...|-..-....++...+..+..++.+||++|-.+.
T Consensus        49 ~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~  128 (324)
T PF10292_consen   49 FNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFS  128 (324)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            344555555666666554322111   1222222  1  23345667888888888889999999999999999998876


Q ss_pred             cc
Q psy13415         76 EE   77 (79)
Q Consensus        76 ~~   77 (79)
                      .+
T Consensus       129 ~~  130 (324)
T PF10292_consen  129 KS  130 (324)
T ss_pred             HH
Confidence            43

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=93.82  E-value=0.94  Score=29.67  Aligned_cols=69  Identities=14%  Similarity=0.109  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------cccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q psy13415          7 YFLVNLSLADAMVSTLNVTFNFVYMLSSD-----------WPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKK   75 (79)
Q Consensus         7 ~~~~nLa~~Dll~~~~~~p~~~~~~~~~~-----------~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p   75 (79)
                      -.+..++++|++.++-.+--..++....+           -......|.......+++..++.+-..+-|+|-|..+.+.
T Consensus        69 rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~  148 (405)
T PF02101_consen   69 RILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRS  148 (405)
T ss_pred             hhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeecc
Confidence            35688999999987655444433332211           1123468998888888899999999999999999977554

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=91.65  E-value=0.45  Score=29.02  Aligned_cols=38  Identities=11%  Similarity=0.146  Sum_probs=32.2

Q ss_pred             chhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccc
Q psy13415         39 GRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKE   76 (79)
Q Consensus        39 ~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~   76 (79)
                      ++..+|.......+..+.+++....+++||+.|.....
T Consensus        81 ~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~  118 (236)
T PF02175_consen   81 DPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAE  118 (236)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            55677888888888999999999999999999987643

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=91.25  E-value=2.6  Score=26.78  Aligned_cols=70  Identities=16%  Similarity=0.283  Sum_probs=45.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhH------hhHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q psy13415          2 RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCK------VTQFVAVLSICASVFTLMAISVDRKKKKKKK   75 (79)
Q Consensus         2 ~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~------~~~~~~~~~~~~s~~~l~~isidRy~~i~~p   75 (79)
                      |+|.+..+.=|++.|+..........-....     .|...|+      +.+.....+-.++...-..++++|..-+..|
T Consensus        64 k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i-----~G~vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~  138 (313)
T PF10321_consen   64 KMSCYKIMFFLAIFDIIQLFINSIITGILAI-----FGAVFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCCELNFP  138 (313)
T ss_pred             cCcHHHHHHHHHHHHHHHHHhhhhhhhHHHh-----cCccccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            5788899999999999876433222212222     2344443      3344445556678888889999999888776


Q ss_pred             c
Q psy13415         76 E   76 (79)
Q Consensus        76 ~   76 (79)
                      .
T Consensus       139 ~  139 (313)
T PF10321_consen  139 F  139 (313)
T ss_pred             h
Confidence            4

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=91.22  E-value=0.79  Score=28.51  Aligned_cols=67  Identities=9%  Similarity=-0.160  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHc--CCcccchhhhHhh-HHHHHHhHHHHHHHHHHHHHHHHHhhhcccc
Q psy13415         11 NLSLADAMVSTLNVTFNFVYMLS--SDWPFGRFYCKVT-QFVAVLSICASVFTLMAISVDRKKKKKKKEE   77 (79)
Q Consensus        11 nLa~~Dll~~~~~~p~~~~~~~~--~~~~~~~~~C~~~-~~~~~~~~~~s~~~l~~isidRy~~i~~p~~   77 (79)
                      --...|.+.+....+...+....  ...........+. +......+.........||+||-.|+.-|..
T Consensus        46 ~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~  115 (273)
T PF10316_consen   46 FRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGWPSSNLGSIRSILALIIALDRVFAVYFPIF  115 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhhhHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            34678988887665544433321  1111111112222 3334445567777788999999999999973

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=90.89  E-value=2.6  Score=26.13  Aligned_cols=73  Identities=11%  Similarity=0.129  Sum_probs=49.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------cccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhh
Q psy13415          4 VTNYFLVNLSLADAMVSTLNVTFNFVYMLSSD-----------WPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKK   72 (79)
Q Consensus         4 ~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~-----------~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i   72 (79)
                      +..+++.|-++.|++.+....-.. ......+           -.+|+..|.........+...+.+.+..--.-||..+
T Consensus        33 ~~~~~l~~~~~~~~~~~~~~~~~q-~R~i~~~~~~~~~~~GpC~~~~~~~C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL  111 (292)
T PF10317_consen   33 TYSILLLNTAIFDLISIISAFLTQ-PRIIPNGTSIAVISYGPCRYFGPWFCFFCYHIMLHFSIHSGWSIILSFYYRYYIL  111 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-hhccCCCCcEEEEeeecceecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            346789999999998875432221 1111111           1246778888777777777888888888888899998


Q ss_pred             hcccc
Q psy13415         73 KKKEE   77 (79)
Q Consensus        73 ~~p~~   77 (79)
                      .++..
T Consensus       112 ~~~~~  116 (292)
T PF10317_consen  112 RNPSP  116 (292)
T ss_pred             cCCCC
Confidence            87653

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=89.59  E-value=3.2  Score=25.16  Aligned_cols=39  Identities=13%  Similarity=0.134  Sum_probs=32.6

Q ss_pred             hhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415         40 RFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus        40 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +...++..++......+-...-..|+++|+-++..|.++
T Consensus        78 ~~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~  116 (275)
T PF02118_consen   78 PFFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRY  116 (275)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            345667777788888899999999999999999998765

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans

Probab=88.09  E-value=0.96  Score=27.29  Aligned_cols=41  Identities=12%  Similarity=0.135  Sum_probs=28.7

Q ss_pred             cchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415         38 FGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus        38 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      ..-..|.+..-....+..+.-...+++|+|||.-|+...|-
T Consensus       112 ytI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl  152 (226)
T PF06681_consen  112 YTIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKRL  152 (226)
T ss_pred             EEEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeecccC
Confidence            35567887765555555555556668999999988876653

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	79
2ks9_A	364	Solution Conformation Of Substance P In Water Compl		2e-13
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		7e-09
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-08
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		1e-08
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		2e-08
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		3e-08
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		3e-08
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		4e-08
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		4e-08
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		4e-08
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		7e-08
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		2e-07
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		4e-07
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		8e-07
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		3e-06
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		4e-06
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		4e-05
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		7e-05
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		7e-05
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		7e-04

>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 47/68 (69%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYFLVNL+ A+A ++  N   NF Y + ++W +G FYCK   F  + ++ AS+++
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122
Query: 61  LMAISVDR 68
           + A++ DR
Sbjct: 123 MTAVAFDR 130

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++TVTNYF+ +L+ AD ++    V F   ++L+  W FG F+C+    + VL + AS+ T
Sbjct: 36  LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET 95
Query: 61  LMAISVDR 68
           L  I+VDR
Sbjct: 96  LCVIAVDR 103

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++TVTNYF+ +L+ AD ++    V F   ++L+  W FG F+C+    + VL + AS+ T
Sbjct: 213 LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET 272
Query: 61  LMAISVDR 68
           L  I+VDR
Sbjct: 273 LCVIAVDR 280

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++TVTNYF+ +L+ AD ++    V F   ++L   W FG F+C+    + VL + AS++T
Sbjct: 72  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWT 131
Query: 61  LMAISVDR 68
           L  I+VDR
Sbjct: 132 LCVIAVDR 139

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           M+T TN ++ NL+LADA+V+T     + VY+++S WPFG   CK+   +   ++  S+FT
Sbjct: 53  MKTATNIYIFNLALADALVTTTMPFQSTVYLMNS-WPFGDVLCKIVLSIDYYNMFTSIFT 111
Query: 61  LMAISVDR 68
           L  +SVDR
Sbjct: 112 LTMMSVDR 119

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++TVTNYF+ +L+ AD ++    V F   ++L   W FG F+C+    + VL + AS+ T
Sbjct: 41  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 100
Query: 61  LMAISVDR 68
           L  I+VDR
Sbjct: 101 LCVIAVDR 108

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++TVTNYF+ +L+ AD ++    V F   ++L   W FG F+C+    + VL + AS+ T
Sbjct: 64  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 123
Query: 61  LMAISVDR 68
           L  I+VDR
Sbjct: 124 LCVIAVDR 131

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++TVTNYF+ +L+ AD ++    V F   ++L   W FG F+C+    + VL + AS+ T
Sbjct: 65  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 124
Query: 61  LMAISVDR 68
           L  I+VDR
Sbjct: 125 LCVIAVDR 132

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++TVTNYF+ +L+ AD ++    V F   ++L   W FG F+C+    + VL + AS+ T
Sbjct: 72  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 131
Query: 61  LMAISVDR 68
           L  I+VDR
Sbjct: 132 LCVIAVDR 139

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++TVTNYF+ +L+ AD ++    V F   ++L   W FG F+C+    + VL + AS+ T
Sbjct: 71  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 130
Query: 61  LMAISVDR 68
           L  I+VDR
Sbjct: 131 LCVIAVDR 138

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           M+T TN ++ NL+LADA+ +T  + F  V  L   WPFG   CK+   +   ++  S+FT
Sbjct: 48  MKTATNIYIFNLALADAL-ATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFT 106
Query: 61  LMAISVDR 68
           L  +SVDR
Sbjct: 107 LCTMSVDR 114

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++TVTNYF+ +L+ AD ++    V F    +L   W FG F+C+    + VL + AS+ T
Sbjct: 40  LQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWTSIDVLCVTASIET 99
Query: 61  LMAISVDR 68
           L  I+VDR
Sbjct: 100 LCVIAVDR 107

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++T TN ++ NL+LADA+ +T  + F     L   WPFG   CK    +   ++  S+FT
Sbjct: 45  LKTATNIYIFNLALADAL-ATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFT 103
Query: 61  LMAISVDR 68
           L  +SVDR
Sbjct: 104 LTMMSVDR 111

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           M+T TN ++ NL+LAD +V  L + F    +L   WPFG   CK    +   ++  S FT
Sbjct: 156 MKTATNIYIFNLALADTLV-LLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFT 214
Query: 61  LMAISVDR 68
           L A+SVDR
Sbjct: 215 LTAMSVDR 222

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++T+TN F+ +L+ AD +V  L V F    ++   W +G F C++   + VL + AS+ T
Sbjct: 42  LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIET 101
Query: 61  LMAISVDR 68
           L  I++DR
Sbjct: 102 LCVIAIDR 109

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++T+TN F+ +L+ AD +V  L V F    ++   W +G F C++   + VL + AS+ T
Sbjct: 42  LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIET 101
Query: 61  LMAISVDR 68
           L  I++DR
Sbjct: 102 LCVIAIDR 109

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           + TV N ++V+LS+AD +V  + +  N +Y+L S W  GR  C     +  ++  AS+F+
Sbjct: 39  LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFS 98
Query: 61  LMAISVDR 68
           +  + +DR
Sbjct: 99  VFILCIDR 106

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++TV NYFL++L+ AD ++  +++     Y++ + W  G   C +   +  ++  ASV  
Sbjct: 43  LKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMN 102
Query: 61  LMAISVDR 68
           L+ IS DR
Sbjct: 103 LLVISFDR 110

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFN-FVYMLSSDWPFGRFYCKVTQFVAVLSICASVF 59
           ++T TNY +V+L++AD +V+TL + +  ++ +    W F R  C V   + V+   AS++
Sbjct: 69  LQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIW 128
Query: 60  TLMAISVDR 68
            L AIS+DR
Sbjct: 129 NLCAISIDR 137

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++TV NYFL +L+ AD ++   ++    +Y +   WP G   C +   +  +   ASV  
Sbjct: 54  LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMN 113
Query: 61  LMAISVDR 68
           L+ IS DR
Sbjct: 114 LLIISFDR 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	79
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	4e-30
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	5e-26
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	3e-25
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	2e-19
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	5e-19
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	8e-19
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	9e-19
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	2e-18
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	4e-18
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	7e-18
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	9e-18
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	8e-17
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	8e-17
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-16
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	3e-14

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score =  107 bits (269), Expect = 4e-30
 Identities = 30/68 (44%), Positives = 47/68 (69%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           MRTVTNYFLVNL+ A+A ++  N   NF Y + ++W +G FYCK   F  + ++ AS+++
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122

Query: 61  LMAISVDR 68
           + A++ DR
Sbjct: 123 MTAVAFDR 130

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 96.3 bits (240), Expect = 5e-26
 Identities = 19/68 (27%), Positives = 35/68 (51%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           +RT  NY L+NL++AD  +     T      L   + FG   C +  F A L    ++++
Sbjct: 69  LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 128

Query: 61  LMAISVDR 68
           L+ ++++R
Sbjct: 129 LVVLAIER 136

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 79.2 bits (195), Expect = 2e-19
 Identities = 27/67 (40%), Positives = 42/67 (62%)

Query: 2   RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTL 61
           +TVTNYF+ +L+ AD ++    V F   ++L+  W FG F+C+    + VL + AS+ TL
Sbjct: 214 QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETL 273

Query: 62  MAISVDR 68
             I+VDR
Sbjct: 274 CVIAVDR 280

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 78.2 bits (192), Expect = 5e-19
 Identities = 27/68 (39%), Positives = 42/68 (61%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++TVTNYF+ +L+ AD ++    V F   ++L   W FG F+C+    + VL + AS+ T
Sbjct: 71  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 130

Query: 61  LMAISVDR 68
           L  I+VDR
Sbjct: 131 LCVIAVDR 138

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 76.7 bits (189), Expect = 8e-19
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query: 2   RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTL 61
           +T+TN F+ +L+ AD +V  L V F    ++   W +G F C++   + VL + AS+ TL
Sbjct: 43  QTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETL 102

Query: 62  MAISVDR 68
             I++DR
Sbjct: 103 CVIAIDR 109

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 77.4 bits (190), Expect = 9e-19
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++TV NYFL +L+ AD ++   ++    +Y +   WP G   C +   +  +   ASV  
Sbjct: 54  LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMN 113

Query: 61  LMAISVDR 68
           L+ IS DR
Sbjct: 114 LLIISFDR 121

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 76.7 bits (188), Expect = 2e-18
 Identities = 22/68 (32%), Positives = 40/68 (58%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           + TV N ++V+LS+AD +V  + +  N +Y+L S W  GR  C     +  ++  AS+F+
Sbjct: 39  LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFS 98

Query: 61  LMAISVDR 68
           +  + +DR
Sbjct: 99  VFILCIDR 106

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 75.9 bits (186), Expect = 4e-18
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++ VTNYF+V+L+ AD  V  L + F         +      C       ++   +S+F+
Sbjct: 62  LQNVTNYFVVSLAAADIAVGVLAIPFAITISTG--FCAACHGCLFIACFVLVLTQSSIFS 119

Query: 61  LMAISVDR 68
           L+AI++DR
Sbjct: 120 LLAIAIDR 127

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 75.0 bits (184), Expect = 7e-18
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           M+T TN ++ NL+LADA+  T  + F  V  L   WPFG   CK+   +   ++  S+FT
Sbjct: 48  MKTATNIYIFNLALADALA-TSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFT 106

Query: 61  LMAISVDR 68
           L  +SVDR
Sbjct: 107 LCTMSVDR 114

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 74.8 bits (183), Expect = 9e-18
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           ++ VTNYF+V+L+ AD  V  L + F         +      C       ++   +S+F+
Sbjct: 52  LQNVTNYFVVSLAAADIAVGVLAIPFAITISTG--FCAACHGCLFIACFVLVLTQSSIFS 109

Query: 61  LMAISVDR 68
           L+AI++DR
Sbjct: 110 LLAIAIDR 117

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 72.2 bits (176), Expect = 8e-17
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 2   RTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTL 61
                YF+ NL+L+D +      T N +   ++ +        + +    +++ ASVF+L
Sbjct: 95  HRPMYYFIGNLALSDLLAGVA-YTANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSL 153

Query: 62  MAISVDR 68
           +AI+++R
Sbjct: 154 LAIAIER 160

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 72.1 bits (176), Expect = 8e-17
 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSD-WPFGRFYCKVTQFVAVLSICASVF 59
           ++T TNY +V+L++AD +V+TL + +     ++   W F R  C V   + V+   AS++
Sbjct: 69  LQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIW 128

Query: 60  TLMAISVDR 68
            L AIS+DR
Sbjct: 129 NLCAISIDR 137

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 70.7 bits (173), Expect = 2e-16
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLN-VTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVF 59
           ++T  N F++NL+ +D   S +N      +      W FG   CKV  F+  +    S+ 
Sbjct: 65  LQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIM 124

Query: 60  TLMAISVDR 68
           T+  IS+DR
Sbjct: 125 TMAMISIDR 133

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 64.9 bits (158), Expect = 3e-14
 Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           +R++T+ + ++LS+AD +   + + F  V  ++ +W FG F CK    +  +++ +SV+ 
Sbjct: 79  LRSMTDKYRLHLSVADLLF-VITLPFWAVDAVA-NWYFGNFLCKAVHVIYTVNLYSSVWI 136

Query: 61  LMAISVDR 68
           L  IS+DR
Sbjct: 137 LAFISLDR 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.85
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.83
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.83
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.83
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.83
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.82
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.82
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.81
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.81
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.8
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.79
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.78
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.78
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.78
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.77
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.77
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.76
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.75
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	98.97

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.85  E-value=4e-21  Score=122.58  Aligned_cols=78  Identities=21%  Similarity=0.356  Sum_probs=71.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccC
Q psy13415          2 RTVTNYFLVNLSLADAMVSTLNVTFNFVYML--SSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEKK   79 (79)
Q Consensus         2 ~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~--~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~~   79 (79)
                      |+++|+|++|||++|++++++.+|+.+....  .+.|.+|+..|++..++..++..+|++++++||+|||++|++|++++
T Consensus        67 ~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~  146 (510)
T 4grv_A           67 QSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAK  146 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEecccccc
Confidence            4789999999999999999999999887654  35699999999999999999999999999999999999999999764

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.83  E-value=4e-20  Score=110.57  Aligned_cols=77  Identities=30%  Similarity=0.510  Sum_probs=69.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccC
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEKK   79 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~~   79 (79)
                      +|+++|+++.|||++|++.+ ..+|....... ++|..|+..|+...+....+..+|.+++++||+|||.+|++|++++
T Consensus        42 lrt~~n~~i~nLAvaDll~~-l~~p~~~~~~~-~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~  118 (296)
T 2lnl_A           42 GRSVTDVYLLNLALADLLFA-LTLPIWAASKV-NGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTL  118 (296)
T ss_dssp             CCSTTHHHHHHHHHHHHHHH-HHHHHHHHHHH-SSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSSS
T ss_pred             CCChHHHHHHHHHHHHHHHH-HhhhHHHhhcc-CCCccchhHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhhccccc
Confidence            68999999999999999987 46777766555 4699999999999999999999999999999999999999999764

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.83  E-value=2.7e-20  Score=118.28  Aligned_cols=78  Identities=35%  Similarity=0.535  Sum_probs=73.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|+++|++++|||++|++.+++.+|..+.....+.|.+|+..|++..++..++..+|++++++||+|||.+|++|+++
T Consensus        71 l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~Si~~l~~isidRy~aI~~Pl~~  148 (500)
T 2rh1_A           71 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY  148 (500)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTT
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHeeccCcC
Confidence            578999999999999999998899999888888899999999999999999999999999999999999999999875

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.83  E-value=6.7e-20  Score=114.15  Aligned_cols=78  Identities=28%  Similarity=0.548  Sum_probs=74.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|+++|++++|||++|++.++..+|..+.....+.|.+|...|++..++..++..+|++++++|++|||++|++|+++
T Consensus        39 ~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~  116 (452)
T 3rze_A           39 LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRY  116 (452)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCT
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHheeCcccc
Confidence            579999999999999999999999999988888899999999999999999999999999999999999999999975

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.83  E-value=8.5e-20  Score=111.36  Aligned_cols=79  Identities=38%  Similarity=0.766  Sum_probs=73.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccC
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEKK   79 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~~   79 (79)
                      +|+++|+++.|||++|++.++...|..+.....+.|.+|+..|++..+.......+|.+++++|++|||.+|++|+++|
T Consensus        63 l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~  141 (364)
T 2ks9_A           63 MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPR  141 (364)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            5899999999999999999888899888777778899999999999999999999999999999999999999999864

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.82  E-value=6.9e-20  Score=114.47  Aligned_cols=78  Identities=29%  Similarity=0.479  Sum_probs=74.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|+++|++++|||++|++.+++.+|..+.....+.|.+|+..|++..++..++..+|.+++++||+|||++|++|+++
T Consensus        54 ~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~~  131 (467)
T 3uon_A           54 LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTY  131 (467)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            478999999999999999999999999888888899999999999999999999999999999999999999999874

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.82  E-value=1.7e-19  Score=109.15  Aligned_cols=79  Identities=25%  Similarity=0.344  Sum_probs=73.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccC
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEKK   79 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~~   79 (79)
                      +|+++|+++.|||++|++.++...|..+.....+.|.+|+..|++..+....+..+|.+++++|++|||.+|++|++++
T Consensus        69 ~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~  147 (349)
T 1u19_A           69 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNF  147 (349)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSC
T ss_pred             hcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCccce
Confidence            5789999999999999999988899888777778899999999999999999999999999999999999999998764

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.81  E-value=2.1e-19  Score=112.76  Aligned_cols=77  Identities=23%  Similarity=0.444  Sum_probs=67.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLS-SDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~-~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|+++|++++|||++|++.++ .+|........ +.|.+|+..|++..++..++..+|++++++||+|||++|++|+++
T Consensus        51 l~~~~~~~l~~La~aDll~~~-~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~  128 (484)
T 3vw7_A           51 VKKPAVVYMLHLATADVLFVS-VLPFKISYYFSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQS  128 (484)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHT-THHHHHHHHHTTSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred             cCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCcccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHheEEEccccc
Confidence            578999999999999999975 46666555544 489999999999999999999999999999999999999999875

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.81  E-value=3.4e-20  Score=110.73  Aligned_cols=78  Identities=31%  Similarity=0.498  Sum_probs=73.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|+++|+++.|||++|++.++...|..+.....+.|.+|+..|++..+....+..+|.+++++||+|||.+|++|.++
T Consensus        42 ~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~  119 (315)
T 4amj_A           42 LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRY  119 (315)
T ss_dssp             GCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            478999999999999999988889988888888899999999999999999999999999999999999999999864

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.80  E-value=1.6e-19  Score=112.65  Aligned_cols=77  Identities=35%  Similarity=0.616  Sum_probs=71.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|+++|+++.|||++|++.++. +|..+.....+.|.+|...|++..++..++..+|++++++|++|||.+|++|+++
T Consensus        48 ~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~  124 (464)
T 4dkl_A           48 MKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKA  124 (464)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            5799999999999999998865 8988888888899999999999999999999999999999999999999999864

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.79  E-value=7.3e-19  Score=110.28  Aligned_cols=78  Identities=32%  Similarity=0.509  Sum_probs=72.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLS-SDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~-~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|+++|++++|||++|++.+++.+|..+..... +.|.+|...|++..++..++..+|++++++|++|||++|++|+++
T Consensus        69 ~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~  147 (481)
T 3pbl_A           69 LQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHY  147 (481)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            579999999999999999998999988876665 579999999999999999999999999999999999999999864

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.78  E-value=3.2e-19  Score=113.61  Aligned_cols=78  Identities=35%  Similarity=0.560  Sum_probs=73.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|+++|++++|||++|++.+++.+|..+.....+.|.+|+..|++..++..++..+|.+++++|++|||++|++|+++
T Consensus       213 lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~S~~~l~~isidRy~aI~~Pl~~  290 (514)
T 3sn6_R          213 LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY  290 (514)
T ss_dssp             GCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence            479999999999999999988899999888888899999999999999999999999999999999999999999864

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.78  E-value=1.3e-18  Score=109.62  Aligned_cols=76  Identities=28%  Similarity=0.531  Sum_probs=69.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|+++|++++|||++|++.+ +.+|..+..... .|.+|...|++..++..+...+|++++++||+|||++|++|+++
T Consensus        79 l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~~-~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~~~  154 (502)
T 3odu_A           79 LRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVA-NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNS  154 (502)
T ss_dssp             SCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHHT-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred             CCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-CCcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheeccccc
Confidence            58999999999999999995 688888776655 69999999999999999999999999999999999999999975

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.77  E-value=1.4e-18  Score=110.98  Aligned_cols=76  Identities=20%  Similarity=0.251  Sum_probs=67.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|+++|+|++|||++|++.++...|..+.. ....|.++...|++..++..++.++|++++++||+|||++|+ |+++
T Consensus        94 lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c~~~~~~~~~~~~~S~~~l~~isidRy~aI~-p~~~  169 (520)
T 3v2y_A           94 FHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITML-KMKL  169 (520)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C---
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccccchHHHHHHHHHHHHHHHHHHHHHHHhhEEe-cccc
Confidence            589999999999999999998888877655 455799999999999999999999999999999999999999 9874

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.77  E-value=2.3e-18  Score=107.91  Aligned_cols=76  Identities=26%  Similarity=0.406  Sum_probs=69.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|+++|++++|||++|++.+++.+|..+...  ..|.+|...|++..++..++..+|++++++|++|||.+|++|+++
T Consensus        52 ~~~~~~~~l~~La~aDll~~~~~~p~~~~~~--~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~  127 (488)
T 3eml_A           52 LQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRY  127 (488)
T ss_dssp             GCSSHHHHHHHHHHHHHHHHHTHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGS
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeccccc
Confidence            4789999999999999999989999876543  368899999999999999999999999999999999999999874

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.76  E-value=4.2e-18  Score=106.58  Aligned_cols=78  Identities=27%  Similarity=0.420  Sum_probs=71.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLN-VTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|++.|++++|||++|++.+++. +|..+.....+.|.+|+..|++..++...+..+|++++++|++|||++|++|+++
T Consensus        65 ~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~  143 (448)
T 2z73_A           65 LQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAA  143 (448)
T ss_dssp             TCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             cCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            57899999999999999998764 7888777777889999999999999999999999999999999999999999875

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.75  E-value=2.8e-18  Score=106.68  Aligned_cols=76  Identities=26%  Similarity=0.406  Sum_probs=69.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhccccc
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|+++|+++.|||++|++.++..+|..+...  ..|..|...|++..++..++..+|++++++||+|||.+|++|+++
T Consensus        62 l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~  137 (447)
T 4eiy_A           62 LQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRY  137 (447)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--TTCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHeEEeccccc
Confidence            4799999999999999999989999876643  368889999999999999999999999999999999999999863

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=98.97  E-value=1.5e-10  Score=48.49  Aligned_cols=23  Identities=35%  Similarity=0.313  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHhhhccccc
Q psy13415         56 ASVFTLMAISVDRKKKKKKKEEK   78 (79)
Q Consensus        56 ~s~~~l~~isidRy~~i~~p~~~   78 (79)
                      +|++++++|++|||.+|++|++.
T Consensus         2 ~Si~~L~~is~dRy~aI~~Pl~~   24 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSITQAIEY   24 (32)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHGG
T ss_pred             cHHHHHHHHHHHHHHHhhhhhhc
Confidence            68999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	79
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	2e-06

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.5 bits (96), Expect = 2e-06
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 1   MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFT 60
           +RT  NY L+NL++AD  +     T      L   + FG   C +  F A L    ++++
Sbjct: 68  LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 127

Query: 61  LMAIS 65
           L+ ++
Sbjct: 128 LVVLA 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.71

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=7e-17  Score=96.43  Aligned_cols=79  Identities=25%  Similarity=0.344  Sum_probs=73.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhhhHhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccC
Q psy13415          1 MRTVTNYFLVNLSLADAMVSTLNVTFNFVYMLSSDWPFGRFYCKVTQFVAVLSICASVFTLMAISVDRKKKKKKKEEKK   79 (79)
Q Consensus         1 l~~~~~~~~~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~p~~~~   79 (79)
                      +|++.|+++.|||++|++.++...|..+.....+.|..+...|+...+....+..+|.++++++++|||.+|++|.+++
T Consensus        68 lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~  146 (348)
T d1u19a_          68 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNF  146 (348)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSC
T ss_pred             CCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhhhhhhccccceeeecchhhhhhcccceeeecccccc
Confidence            5899999999999999999988899888888888899999999999999999999999999999999999999998764