Psyllid ID: psy13427

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MIHPCLRLSINSRLSTQTHYLFKKLSTVPNVDPLPSTSNTESKDTSQEPEVPNPLRYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKLLSEKQEVQHN
ccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHcccccccccccccccccHHHHHHHccccccHHHHcccccccccccHHHHHHHHccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccEEEEEcccccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHcEEEEEEHHHHHHccccccccccccccccccEEEEccccEEEEEHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHcccEEEccHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEEEcccccccccEEccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccc
mihpclrlsinsrlsTQTHYLFKklstvpnvdplpstsnteskdtsqepevpnplryhdyfQVRNLVKVKDMFDAKVHLGHkigsldermkpyiygvrqgqiiFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRfwrqgmftnSEKLFRAVTRLPDLVILTNtlttvlepnpaigeaakmciptvgivdsncnpnlitypvpgnddtpsAIQYYCQVFKTAILKGKKAKQDTLKLLSEKQEVQHN
mihpclrlsinsrlSTQTHYLFKklstvpnvdplpstsnteskdtsqepevpnplryHDYFQVRNLVKVKDMFDAKVHLGhkigsldermkPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKllsekqevqhn
MIHPCLRLSINSRLSTQTHYLFKKLSTVPNVDPLPSTSNTESKDTSQEPEVPNPLRYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDlviltntlttvlEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKLLSEKQEVQHN
*****LRLSINSRLSTQTHYLFKKL*****************************LRYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKG********************
**********************************************************DYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILK*********************
MIHPCLRLSINSRLSTQTHYLFKKLSTVPNVDPL****************VPNPLRYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKLLSEKQEVQHN
*IHPCLRLSINSRLSTQTHYLFKKLSTVPNVDPLP************EPEVPNPLRYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKK******************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
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MIHPCLRLSINSRLSTQTHYLFKKLSTVPNVDPLPSTSNTESKDTSQEPEVPNPLRYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKLLSEKQEVQHN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
Q924T2291 28S ribosomal protein S2, yes N/A 0.824 0.759 0.529 2e-65
Q9Y399296 28S ribosomal protein S2, yes N/A 0.794 0.719 0.525 1e-63
P82923293 28S ribosomal protein S2, yes N/A 0.746 0.682 0.54 2e-63
Q1RH01291 30S ribosomal protein S2 yes N/A 0.664 0.611 0.331 7e-30
A8GUK1291 30S ribosomal protein S2 yes N/A 0.664 0.611 0.331 7e-30
A8GM32295 30S ribosomal protein S2 yes N/A 0.664 0.603 0.331 9e-29
Q4UND8295 30S ribosomal protein S2 yes N/A 0.664 0.603 0.327 1e-28
Q68XV5295 30S ribosomal protein S2 yes N/A 0.679 0.616 0.346 2e-28
O67809274 30S ribosomal protein S2 yes N/A 0.723 0.708 0.298 3e-28
Q9ZE61296 30S ribosomal protein S2 yes N/A 0.664 0.601 0.314 4e-28
>sp|Q924T2|RT02_MOUSE 28S ribosomal protein S2, mitochondrial OS=Mus musculus GN=Mrps2 PE=2 SV=1 Back     alignment and function desciption
 Score =  249 bits (635), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/221 (52%), Positives = 159/221 (71%)

Query: 33  PLPSTSNTESKDTSQEPEVPNPLRYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKP 92
           P+P+ S  +  D  Q   +  PL++ D+F V+ L  VK +F+A+VHLGHK G     M+P
Sbjct: 42  PVPAVSEPQDGDDFQSRILDTPLQHSDFFNVKELFSVKSLFEARVHLGHKAGCRHRFMEP 101

Query: 93  YIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQE 152
           YI+G R GQ I DLDQ+A  L+ ALNF AH+AYR GI+LFV ++ Q S LIE TAQ C E
Sbjct: 102 YIFGNRLGQDIIDLDQTALNLQLALNFTAHVAYRKGIILFVSRNRQFSHLIETTAQACGE 161

Query: 153 FAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVD 212
           +AHTR+++ G+ TN++ LF    RLPDL+I  +TL  V EP+ A+ +AAKM IPTVGIVD
Sbjct: 162 YAHTRYFKGGLLTNAQLLFGPSVRLPDLIIFLHTLNNVFEPHVAVRDAAKMNIPTVGIVD 221

Query: 213 SNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQ 253
           +NCNP LITYP+PGNDD+P AIQ +C++F+T I + K+ ++
Sbjct: 222 TNCNPCLITYPIPGNDDSPQAIQLFCKLFRTTINRAKEKRR 262

Mus musculus (taxid: 10090)
>sp|Q9Y399|RT02_HUMAN 28S ribosomal protein S2, mitochondrial OS=Homo sapiens GN=MRPS2 PE=1 SV=1 Back     alignment and function description
>sp|P82923|RT02_BOVIN 28S ribosomal protein S2, mitochondrial OS=Bos taurus GN=MRPS2 PE=1 SV=2 Back     alignment and function description
>sp|Q1RH01|RS2_RICBR 30S ribosomal protein S2 OS=Rickettsia bellii (strain RML369-C) GN=rpsB PE=3 SV=1 Back     alignment and function description
>sp|A8GUK1|RS2_RICB8 30S ribosomal protein S2 OS=Rickettsia bellii (strain OSU 85-389) GN=rpsB PE=3 SV=1 Back     alignment and function description
>sp|A8GM32|RS2_RICAH 30S ribosomal protein S2 OS=Rickettsia akari (strain Hartford) GN=rpsB PE=3 SV=1 Back     alignment and function description
>sp|Q4UND8|RS2_RICFE 30S ribosomal protein S2 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=rpsB PE=3 SV=1 Back     alignment and function description
>sp|Q68XV5|RS2_RICTY 30S ribosomal protein S2 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=rpsB PE=3 SV=1 Back     alignment and function description
>sp|O67809|RS2_AQUAE 30S ribosomal protein S2 OS=Aquifex aeolicus (strain VF5) GN=rpsB PE=3 SV=1 Back     alignment and function description
>sp|Q9ZE61|RS2_RICPR 30S ribosomal protein S2 OS=Rickettsia prowazekii (strain Madrid E) GN=rpsB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
156538291256 PREDICTED: 28S ribosomal protein S2, mit 0.820 0.859 0.595 4e-76
91079290249 PREDICTED: similar to mitochondrial ribo 0.768 0.827 0.635 8e-75
340721308263 PREDICTED: 28S ribosomal protein S2, mit 0.847 0.863 0.572 1e-74
195342548265 GM18067 [Drosophila sechellia] gi|194132 0.779 0.788 0.611 5e-74
28574694264 mitochondrial ribosomal protein S2 [Dros 0.779 0.791 0.606 1e-73
195471357264 GE14662 [Drosophila yakuba] gi|194174072 0.761 0.772 0.612 1e-73
195437396275 GK24593 [Drosophila willistoni] gi|19416 0.776 0.756 0.619 3e-73
125985943278 GA15531 [Drosophila pseudoobscura pseudo 0.847 0.816 0.576 4e-73
194766019265 GF21552 [Drosophila ananassae] gi|190617 0.779 0.788 0.601 7e-73
350406965254 PREDICTED: 28S ribosomal protein S2, mit 0.847 0.893 0.564 1e-72
>gi|156538291|ref|XP_001603481.1| PREDICTED: 28S ribosomal protein S2, mitochondrial [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 143/240 (59%), Positives = 174/240 (72%), Gaps = 20/240 (8%)

Query: 13  RLSTQTHYLFKKLSTVPNVDPLPSTSNTESKDTSQEPEVPNPLRYHDYFQVRNLVKVKDM 72
           +LSTQT          PN+ P  ST    S           PL++ DYFQV  L  VKD+
Sbjct: 30  KLSTQTQ---------PNIQPEESTEVRLS-----------PLQHPDYFQVHKLFTVKDL 69

Query: 73  FDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLF 132
           FDA+VH GHK G+LDE M+P+IYG R G +IFDLD +AELLR+ALNF AHIAY  GI+LF
Sbjct: 70  FDARVHYGHKEGTLDEHMRPFIYGSRMGHLIFDLDHTAELLREALNFTAHIAYNQGIILF 129

Query: 133 VGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTLTTVLE 192
           + ++ QN+ L+EKTA++C EFAHTR WR G+FTNS K F AVTRLPDL I  +TL TV+ 
Sbjct: 130 LCRNPQNTHLVEKTAKECGEFAHTRRWRGGIFTNSTKEFGAVTRLPDLCIFLSTLNTVML 189

Query: 193 PNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAK 252
            + A+  AAKM IPTVGIVDSNCNPNLITYPVPGNDDTP A++ YC++FK AIL GK+A+
Sbjct: 190 EHRAVSNAAKMLIPTVGIVDSNCNPNLITYPVPGNDDTPCAVELYCKLFKQAILLGKEAR 249

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91079290|ref|XP_972870.1| PREDICTED: similar to mitochondrial ribosomal protein S2 CG2937-PA [Tribolium castaneum] gi|270003534|gb|EEZ99981.1| hypothetical protein TcasGA2_TC002780 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|340721308|ref|XP_003399065.1| PREDICTED: 28S ribosomal protein S2, mitochondrial-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|195342548|ref|XP_002037862.1| GM18067 [Drosophila sechellia] gi|194132712|gb|EDW54280.1| GM18067 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|28574694|ref|NP_523473.2| mitochondrial ribosomal protein S2 [Drosophila melanogaster] gi|195576610|ref|XP_002078168.1| GD22685 [Drosophila simulans] gi|21428678|gb|AAM49999.1| RE59650p [Drosophila melanogaster] gi|28380249|gb|AAF50970.2| mitochondrial ribosomal protein S2 [Drosophila melanogaster] gi|194190177|gb|EDX03753.1| GD22685 [Drosophila simulans] gi|220949104|gb|ACL87095.1| mRpS2-PA [synthetic construct] gi|220958178|gb|ACL91632.1| mRpS2-PA [synthetic construct] Back     alignment and taxonomy information
>gi|195471357|ref|XP_002087971.1| GE14662 [Drosophila yakuba] gi|194174072|gb|EDW87683.1| GE14662 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|195437396|ref|XP_002066626.1| GK24593 [Drosophila willistoni] gi|194162711|gb|EDW77612.1| GK24593 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|125985943|ref|XP_001356735.1| GA15531 [Drosophila pseudoobscura pseudoobscura] gi|195148144|ref|XP_002015034.1| GL19496 [Drosophila persimilis] gi|54645060|gb|EAL33800.1| GA15531 [Drosophila pseudoobscura pseudoobscura] gi|194106987|gb|EDW29030.1| GL19496 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|194766019|ref|XP_001965122.1| GF21552 [Drosophila ananassae] gi|190617732|gb|EDV33256.1| GF21552 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|350406965|ref|XP_003487938.1| PREDICTED: 28S ribosomal protein S2, mitochondrial-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
FB|FBgn0031639264 mRpS2 "mitochondrial ribosomal 0.858 0.871 0.548 4.1e-65
MGI|MGI:2153089291 Mrps2 "mitochondrial ribosomal 0.824 0.759 0.506 1.2e-56
RGD|1309116291 Mrps2 "mitochondrial ribosomal 0.824 0.759 0.502 1.1e-55
UNIPROTKB|Q9Y399296 MRPS2 "28S ribosomal protein S 0.794 0.719 0.511 7.8e-55
UNIPROTKB|F1PHF1337 MRPS2 "Uncharacterized protein 0.817 0.649 0.493 2.1e-54
UNIPROTKB|P82923293 MRPS2 "28S ribosomal protein S 0.820 0.750 0.486 5.5e-54
UNIPROTKB|F1S001289 MRPS2 "Uncharacterized protein 0.858 0.795 0.454 1.9e-53
UNIPROTKB|Q5T8A0270 MRPS2 "28S ribosomal protein S 0.761 0.755 0.519 4.9e-53
ZFIN|ZDB-GENE-070112-992285 mrps2 "mitochondrial ribosomal 0.824 0.775 0.469 1.9e-51
WB|WBGene00020718264 mrps-2 [Caenorhabditis elegans 0.861 0.875 0.380 4.5e-43
FB|FBgn0031639 mRpS2 "mitochondrial ribosomal protein S2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 129/235 (54%), Positives = 167/235 (71%)

Query:    34 LPSTSNTESKDTSQEPEV---PNPLRYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERM 90
             L ST   +S +T  E         L++ DYFQV NL  V+D+F+A+VH GHK GSLD+RM
Sbjct:    22 LQSTQPEQSVETEPEDIALVEQRILKHPDYFQVHNLFTVRDLFNARVHYGHKEGSLDDRM 81

Query:    91 KPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDC 150
             +PY++G R G +IFDLD++A  LRDALNF AHIA+RDGI+LF  ++A NS L+E+ AQ+ 
Sbjct:    82 RPYLFGSRLGHLIFDLDKTASHLRDALNFAAHIAFRDGIILFFNRNAMNSHLVERKAQEA 141

Query:   151 QEFAHTRFWRQGMFTNSEKLFRAVTRLPDXXXXXXXXXXXXEPNPAIGEAAKMCIPTVGI 210
              EF+HTRFWR G+FTN+   F AVTRLPD              + A+ +AAKM IPT+GI
Sbjct:   142 GEFSHTRFWRGGIFTNANVQFDAVTRLPDLCIFLNTQNNVMAQHTAVRDAAKMAIPTIGI 201

Query:   211 VDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKL--LSEKQ 263
             VDSNCNPNLITYPVPGNDD+P+A++ YC +FK AIL+GK+ ++  L L  L E Q
Sbjct:   202 VDSNCNPNLITYPVPGNDDSPAAVELYCNLFKEAILRGKRERRQLLGLPPLDESQ 256
GO:0006412 "translation" evidence=ISS
GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS
GO:0003735 "structural constituent of ribosome" evidence=ISS
MGI|MGI:2153089 Mrps2 "mitochondrial ribosomal protein S2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309116 Mrps2 "mitochondrial ribosomal protein S2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y399 MRPS2 "28S ribosomal protein S2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHF1 MRPS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P82923 MRPS2 "28S ribosomal protein S2, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S001 MRPS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T8A0 MRPS2 "28S ribosomal protein S2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070112-992 mrps2 "mitochondrial ribosomal protein S2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00020718 mrps-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2NRK7RS2_SODGMNo assigned EC number0.30630.68280.7593yesN/A
A8GM32RS2_RICAHNo assigned EC number0.33180.66410.6033yesN/A
C4K1A0RS2_RICPUNo assigned EC number0.30970.66410.6033yesN/A
Q2GCI4RS2_NEOSMNo assigned EC number0.32570.67910.6107yesN/A
B4RBZ4RS2_PHEZHNo assigned EC number0.32150.67530.6135yesN/A
C3PMC2RS2_RICAENo assigned EC number0.30970.66410.6033yesN/A
B7IHT3RS2_THEABNo assigned EC number0.30660.69400.7181yesN/A
A8EXF0RS2_RICCKNo assigned EC number0.31410.66410.6033yesN/A
A8GQP7RS2_RICRSNo assigned EC number0.30970.66410.6033yesN/A
Q9ZE61RS2_RICPRNo assigned EC number0.31410.66410.6013yesN/A
Q1RH01RS2_RICBRNo assigned EC number0.33180.66410.6116yesN/A
Q4UND8RS2_RICFENo assigned EC number0.32740.66410.6033yesN/A
Q9Y399RT02_HUMANNo assigned EC number0.52550.79470.7195yesN/A
Q92JF5RS2_RICCNNo assigned EC number0.31410.66410.6033yesN/A
B9M5C6RS2_GEOSFNo assigned EC number0.30370.73880.7764yesN/A
B0BW38RS2_RICRONo assigned EC number0.30970.66410.6033yesN/A
B5EHW1RS2_GEOBBNo assigned EC number0.30860.71260.7490yesN/A
P82923RT02_BOVINNo assigned EC number0.540.74620.6825yesN/A
C6E512RS2_GEOSMNo assigned EC number0.30860.71260.7490yesN/A
Q98MB2RS2_RHILONo assigned EC number0.30170.69400.7153yesN/A
Q68XV5RS2_RICTYNo assigned EC number0.34680.67910.6169yesN/A
Q6FZN0RS2_BARQUNo assigned EC number0.31440.68280.7120yesN/A
B0U101RS2_FRAP2No assigned EC number0.32250.66410.7447yesN/A
A8F0I9RS2_RICM5No assigned EC number0.30970.66410.6033yesN/A
A5G7W8RS2_GEOURNo assigned EC number0.30220.69400.7265yesN/A
A8FY42RS2_SHESHNo assigned EC number0.30040.70140.7768yesN/A
B8CQ85RS2_SHEPWNo assigned EC number0.30040.70140.7768yesN/A
A6LLI6RS2_THEM4No assigned EC number0.30220.69400.7237yesN/A
Q924T2RT02_MOUSENo assigned EC number0.52940.82460.7594yesN/A
A8GUK1RS2_RICB8No assigned EC number0.33180.66410.6116yesN/A
Q2GKU9RS2_ANAPZNo assigned EC number0.33780.66790.6047yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
cd01425193 cd01425, RPS2, Ribosomal protein S2 (RPS2), involv 2e-65
pfam00318205 pfam00318, Ribosomal_S2, Ribosomal protein S2 4e-63
COG0052252 COG0052, RpsB, Ribosomal protein S2 [Translation, 1e-48
TIGR01011225 TIGR01011, rpsB_bact, ribosomal protein S2, bacter 2e-46
PRK05299258 PRK05299, rpsB, 30S ribosomal protein S2; Provisio 8e-44
CHL00067230 CHL00067, rps2, ribosomal protein S2 1e-39
PRK12311326 PRK12311, rpsB, 30S ribosomal protein S2/unknown d 5e-31
TIGR01012196 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosol 2e-10
PRK04020204 PRK04020, rps2P, 30S ribosomal protein S2; Provisi 1e-07
PTZ00254249 PTZ00254, PTZ00254, 40S ribosomal protein SA; Prov 2e-05
>gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome Back     alignment and domain information 
 Score =  201 bits (514), Expect = 2e-65
 Identities = 78/197 (39%), Positives = 107/197 (54%), Gaps = 25/197 (12%)

Query: 72  MFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVL 131
           + +A VHLGHK    + +MKPYIYG R G  I DL+++ E LR ALNF+A+IA + G +L
Sbjct: 1   LLEAGVHLGHKTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKIL 60

Query: 132 FVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNS---------------EKLFRA--- 173
           FVG   Q    ++K A+    F     W  G  TN                EKL +    
Sbjct: 61  FVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGG 120

Query: 174 ---VTRLPDLVILTNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDT 230
              + RLPDLVI+ +      E   AI EA+K+ IP + IVD+NC+P+LI YP+P NDD+
Sbjct: 121 IKDMFRLPDLVIVLDPRK---EHQ-AIREASKLGIPVIAIVDTNCDPDLIDYPIPANDDS 176

Query: 231 PSAIQYYCQVFKTAILK 247
             +I     +   AIL+
Sbjct: 177 IRSIALILWLLARAILE 193

It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane and subsequent signalling events, and has been linked to several diseases. Some evidence also suggests that the precursor of 67LR, 37LRP is also present in the nucleus in animals, where it appears associated with histones. Length = 193
>gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2 Back     alignment and domain information
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|130084 TIGR01011, rpsB_bact, ribosomal protein S2, bacterial type Back     alignment and domain information
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional Back     alignment and domain information
>gnl|CDD|177007 CHL00067, rps2, ribosomal protein S2 Back     alignment and domain information
>gnl|CDD|183428 PRK12311, rpsB, 30S ribosomal protein S2/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|188101 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosolic)/S2(archaeal) Back     alignment and domain information
>gnl|CDD|235201 PRK04020, rps2P, 30S ribosomal protein S2; Provisional Back     alignment and domain information
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
KOG0832|consensus251 100.0
COG0052252 RpsB Ribosomal protein S2 [Translation, ribosomal 100.0
TIGR01012196 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archa 100.0
PRK05299258 rpsB 30S ribosomal protein S2; Provisional 100.0
TIGR01011225 rpsB_bact ribosomal protein S2, bacterial type. TI 100.0
PRK04020204 rps2P 30S ribosomal protein S2; Provisional 100.0
PRK12311326 rpsB 30S ribosomal protein S2/unknown domain fusio 100.0
PTZ00254249 40S ribosomal protein SA; Provisional 100.0
CHL00067230 rps2 ribosomal protein S2 100.0
cd01425193 RPS2 Ribosomal protein S2 (RPS2), involved in form 100.0
PF00318211 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR0 100.0
KOG0830|consensus254 100.0
cd05007257 SIS_Etherase N-acetylmuramic acid 6-phosphate ethe 95.74
TIGR03127179 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of 95.69
PRK05441299 murQ N-acetylmuramic acid-6-phosphate etherase; Re 95.53
PRK12570296 N-acetylmuramic acid-6-phosphate etherase; Reviewe 95.07
cd05005179 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI 95.03
PRK00414192 gmhA phosphoheptose isomerase; Reviewed 94.84
cd05006177 SIS_GmhA Phosphoheptose isomerase is a member of t 93.96
PRK11557278 putative DNA-binding transcriptional regulator; Pr 93.82
PRK10886196 DnaA initiator-associating protein DiaA; Provision 93.78
PF13580138 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_ 93.24
PRK13938196 phosphoheptose isomerase; Provisional 93.15
PRK11302284 DNA-binding transcriptional regulator HexR; Provis 93.05
PRK13936197 phosphoheptose isomerase; Provisional 92.75
COG0279176 GmhA Phosphoheptose isomerase [Carbohydrate transp 92.7
PF1008797 DUF2325: Uncharacterized protein conserved in bact 92.58
PRK13937188 phosphoheptose isomerase; Provisional 92.35
TIGR00274291 N-acetylmuramic acid 6-phosphate etherase. This pr 92.21
TIGR00441154 gmhA phosphoheptose isomerase. Involved in lipopol 91.99
PRK15482285 transcriptional regulator MurR; Provisional 91.84
PRK10892 326 D-arabinose 5-phosphate isomerase; Provisional 91.44
PRK11337292 DNA-binding transcriptional repressor RpiR; Provis 91.38
cd05013139 SIS_RpiR RpiR-like protein. RpiR contains a SIS (S 90.16
PRK02947246 hypothetical protein; Provisional 89.59
PRK11382 340 frlB fructoselysine-6-P-deglycase; Provisional 88.57
PF01380131 SIS: SIS domain SIS domain web page.; InterPro: IP 88.49
PRK08674 337 bifunctional phosphoglucose/phosphomannose isomera 87.47
PRK14101638 bifunctional glucokinase/RpiR family transcription 87.09
cd05014128 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5 86.81
PRK00331 604 glucosamine--fructose-6-phosphate aminotransferase 86.64
PRK11543 321 gutQ D-arabinose 5-phosphate isomerase; Provisiona 86.57
cd05710120 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISo 83.96
PLN02335222 anthranilate synthase 82.46
PRK06774191 para-aminobenzoate synthase component II; Provisio 81.47
PRK11070 575 ssDNA exonuclease RecJ; Provisional 80.67
cd05009153 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repea 80.62
TIGR03088374 stp2 sugar transferase, PEP-CTERM/EpsH1 system ass 80.1
>KOG0832|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.8e-63  Score=441.32  Aligned_cols=214  Identities=49%  Similarity=0.815  Sum_probs=200.7

Q ss_pred             cCCCCCCCCCCCCCCCCCCCccccccccccHHHHHhcCceeccccCCCCCCCCCCcccccCCeEEecHHHHHHHHHHHHH
Q psy13427         39 NTESKDTSQEPEVPNPLRYHDYFQVRNLVKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALN  118 (268)
Q Consensus        39 ~~~~~~~~~~~~~~~~l~~~d~f~~~~lv~l~~Ll~a~vHlGh~~~~~np~M~~yIyg~R~gi~IInL~~T~~~L~~A~~  118 (268)
                      ..++..++.+++++.+|.|+|+||+.+++++++|+.||+|+||++++||+.|+|||||.|+|+|||||++|..+|++|++
T Consensus        20 ~~~d~~~~~~~~~~~~l~h~d~fn~~~~~~v~~L~~agvHlGh~t~~wn~~m~pyiyG~R~Gi~IIdLdqT~~~Lr~A~~   99 (251)
T KOG0832|consen   20 KIEDWPHVIQAIVAPHLPHKDYFNVPELISVEELFNAGVHLGHKTGKWNPRMKPYIYGKRLGIHIIDLDQTASYLRRALN   99 (251)
T ss_pred             ccccchhhhhHHhcccCCchhhhcchhhccHHHHHhccccccccccccCcccchhhcccccCcEEEecHHHHHHHHHHHH
Confidence            45566668889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEeCChhhHHHHHHHHHHcCCceecCCcccCcccchhhhhccccC---------------CCceeee
Q psy13427        119 FVAHIAYRDGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTR---------------LPDLVIL  183 (268)
Q Consensus       119 ~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~~g~~~i~~rW~gG~LTN~~~~~~~~~~---------------~Pdlviv  183 (268)
                      |+++++.++|.||||||++.++.+|+++|.++|+++++.+|.||+||||...++...+               .||+|||
T Consensus       100 fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~~~~w~~G~lTN~~~l~g~~~~~~~~~pd~~~f~~t~~~D~vvv  179 (251)
T KOG0832|consen  100 FVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSHNRKWLGGLLTNARELFGALVRKFLSLPDALCFLPTLTPDLVVV  179 (251)
T ss_pred             HHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCceeeeeeccceeecchhhcccccccccCCCcceeecccCCcceeEe
Confidence            9999999999999999999999999999999999999999999999999988754433               4677777


Q ss_pred             ecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHHHHHhhhhhh-HhHH
Q psy13427        184 TNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAK-QDTL  256 (268)
Q Consensus       184 ld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~aIl~gk~~r-~~~~  256 (268)
                      +|    +.+++.|+.||.|++|||||||||||+|++|||||||||||+.|+.|++.++..||.+|+.+| +|..
T Consensus       180 ln----~~e~~sAilEA~K~~IPTIgIVDtN~~P~liTYpVPaNDDs~~sv~f~~~l~k~ai~~g~~~ri~q~~  249 (251)
T KOG0832|consen  180 LN----PEENHSAILEAAKMAIPTIGIVDTNCNPELITYPVPANDDSPASVEFILNLLKRAIARGKQKRIQQGS  249 (251)
T ss_pred             cC----cccccHHHHHHHHhCCCeEEEecCCCCccceeeccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            77    589999999999999999999999999999999999999999999999999999999999999 4443

>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal) Back     alignment and domain information
>PRK05299 rpsB 30S ribosomal protein S2; Provisional Back     alignment and domain information
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type Back     alignment and domain information
>PRK04020 rps2P 30S ribosomal protein S2; Provisional Back     alignment and domain information
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional Back     alignment and domain information
>PTZ00254 40S ribosomal protein SA; Provisional Back     alignment and domain information
>CHL00067 rps2 ribosomal protein S2 Back     alignment and domain information
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome Back     alignment and domain information
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG0830|consensus Back     alignment and domain information
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase Back     alignment and domain information
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase Back     alignment and domain information
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed Back     alignment and domain information
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed Back     alignment and domain information
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI) Back     alignment and domain information
>PRK00414 gmhA phosphoheptose isomerase; Reviewed Back     alignment and domain information
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily Back     alignment and domain information
>PRK11557 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>PRK10886 DnaA initiator-associating protein DiaA; Provisional Back     alignment and domain information
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D Back     alignment and domain information
>PRK13938 phosphoheptose isomerase; Provisional Back     alignment and domain information
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional Back     alignment and domain information
>PRK13936 phosphoheptose isomerase; Provisional Back     alignment and domain information
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PRK13937 phosphoheptose isomerase; Provisional Back     alignment and domain information
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase Back     alignment and domain information
>TIGR00441 gmhA phosphoheptose isomerase Back     alignment and domain information
>PRK15482 transcriptional regulator MurR; Provisional Back     alignment and domain information
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional Back     alignment and domain information
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional Back     alignment and domain information
>cd05013 SIS_RpiR RpiR-like protein Back     alignment and domain information
>PRK02947 hypothetical protein; Provisional Back     alignment and domain information
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional Back     alignment and domain information
>PF01380 SIS: SIS domain SIS domain web page Back     alignment and domain information
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated Back     alignment and domain information
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional Back     alignment and domain information
>cd05014 SIS_Kpsf KpsF-like protein Back     alignment and domain information
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed Back     alignment and domain information
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional Back     alignment and domain information
>cd05710 SIS_1 A subgroup of the SIS domain Back     alignment and domain information
>PLN02335 anthranilate synthase Back     alignment and domain information
>PRK06774 para-aminobenzoate synthase component II; Provisional Back     alignment and domain information
>PRK11070 ssDNA exonuclease RecJ; Provisional Back     alignment and domain information
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD) Back     alignment and domain information
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1p87_B240 Real Space Refined Coordinates Of The 30s Subunit F 9e-20
1vs5_B241 Crystal Structure Of The Bacterial Ribosome From Es 2e-19
2gy9_B236 Structure Of The 30s Subunit Of A Pre-Translocation 3e-19
3fih_B218 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 3e-18
1x18_E231 Contact Sites Of Era Gtpase On The Thermus Thermoph 4e-17
1fjg_B256 Structure Of The Thermus Thermophilus 30s Ribosomal 4e-17
1i94_B255 Crystal Structures Of The Small Ribosomal Subunit W 4e-17
2e5l_B227 A Snapshot Of The 30s Ribosomal Subunit Capturing M 5e-17
1pns_B234 Crystal Structure Of A Streptomycin Dependent Ribos 7e-17
3fic_B235 T. Thermophilus 70s Ribosome In Complex With Mrna, 7e-17
3bbn_B231 Homology Model For The Spinach Chloroplast 30s Subu 2e-12
>pdb|1P87|B Chain B, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome Length = 240 Back     alignment and structure 
Iteration: 1

 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 39/222 (17%)
Query: 67  VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYR 126
           V ++DM  A VH GH+    + +MKP+I+G R    I +L+++  +  +AL  +  IA R
Sbjct: 3   VSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASR 62
Query: 127 DGIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDXXXXXXX 186
            G +LFVG     S  ++  A  C +F     W  GM TN + + +++ RL D       
Sbjct: 63  KGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQD 122
Query: 187 XX---------------------------------------XXXEPNPAIGEAAKMCIPT 207
                                                         + AI EA  + IP 
Sbjct: 123 GTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPV 182
Query: 208 VGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGK 249
             IVD+N +P+ + + +PGNDD   A+  Y       + +G+
Sbjct: 183 FAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 224
>pdb|1VS5|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 241 Back     alignment and structure
>pdb|2GY9|B Chain B, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 236 Back     alignment and structure
>pdb|3FIH|B Chain B, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 218 Back     alignment and structure
>pdb|1X18|E Chain E, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 231 Back     alignment and structure
>pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 256 Back     alignment and structure
>pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 255 Back     alignment and structure
>pdb|2E5L|B Chain B, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via The Shine- Dalgarno Interaction Length = 227 Back     alignment and structure
>pdb|1PNS|B Chain B, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 234 Back     alignment and structure
>pdb|3FIC|B Chain B, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 235 Back     alignment and structure
>pdb|3BBN|B Chain B, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 231 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
3u5c_A252 40S ribosomal protein S0-A; translation, ribosome, 1e-52
3iz6_A305 40S ribosomal protein SA (S2P); eukaryotic ribosom 3e-52
2zkq_b295 40S ribosomal protein SA; protein-RNA complex, 40S 3e-52
3bch_A253 40S ribosomal protein SA; laminin receptor, P40 ri 2e-49
1vi6_A208 30S ribosomal protein S2P; structural genomics, ri 1e-47
3bbn_B231 Ribosomal protein S2; small ribosomal subunit, spi 4e-44
2vqe_B256 30S ribosomal protein S2; tRNA-binding, rRNA-bindi 4e-43
2xzm_B241 RPS0E; ribosome, translation; 3.93A {Tetrahymena t 2e-42
3r8n_B218 30S ribosomal protein S2; protein biosynthesis, RN 4e-42
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Length = 252 Back     alignment and structure
 Score =  170 bits (432), Expect = 1e-52
 Identities = 37/187 (19%), Positives = 73/187 (39%), Gaps = 11/187 (5%)

Query: 69  VKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQI-IFDLDQSAELLRDALNFVAHIAYRD 127
            + +  A  HLG +  ++    +PY++  R   + + ++ ++ E L  A   +A I    
Sbjct: 14  AQLLLAANTHLGAR--NVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIP-NP 70

Query: 128 GIVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNSEKLFRAVTRLPDLVILTNTL 187
             V+ +         + K A           +  G FTN         + P LVI+T+  
Sbjct: 71  EDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRS---FKEPRLVIVTDPR 127

Query: 188 TTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILK 247
           +       AI EA+ + IP + + D +     +   +P N+    +I     +    +L+
Sbjct: 128 SD----AQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLR 183

Query: 248 GKKAKQD 254
            + A  D
Sbjct: 184 LRGALVD 190
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 Back     alignment and structure
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 295 Back     alignment and structure
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Length = 253 Back     alignment and structure
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Length = 208 Back     alignment and structure
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 231 Back     alignment and structure
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Length = 256 Back     alignment and structure
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
2vqe_B256 30S ribosomal protein S2; tRNA-binding, rRNA-bindi 100.0
3bbn_B231 Ribosomal protein S2; small ribosomal subunit, spi 100.0
3bch_A253 40S ribosomal protein SA; laminin receptor, P40 ri 100.0
1vi6_A208 30S ribosomal protein S2P; structural genomics, ri 100.0
3j20_B202 30S ribosomal protein S2P; archaea, archaeal, KINK 100.0
3u5c_A252 40S ribosomal protein S0-A; translation, ribosome, 100.0
3r8n_B218 30S ribosomal protein S2; protein biosynthesis, RN 100.0
2xzm_B241 RPS0E; ribosome, translation; 3.93A {Tetrahymena t 100.0
2zkq_b295 40S ribosomal protein SA; protein-RNA complex, 40S 100.0
3iz6_A305 40S ribosomal protein SA (S2P); eukaryotic ribosom 100.0
2yva_A196 DNAA initiator-associating protein DIAA; intermole 96.04
3trj_A201 Phosphoheptose isomerase; lipopolysaccharide biosy 95.78
3sho_A187 Transcriptional regulator, RPIR family; structural 95.64
1tk9_A188 Phosphoheptose isomerase 1; lipopolysaccharide bio 94.9
2xbl_A198 Phosphoheptose isomerase; capsule; HET: M7P PGE PG 94.82
1nri_A306 Hypothetical protein HI0754; structural genomics, 94.81
1x92_A199 APC5045, phosphoheptose isomerase; midwest centre 94.77
2i2w_A212 Phosphoheptose isomerase; lipopolysaccharide biosy 94.7
1vim_A200 Hypothetical protein AF1796; structural genomics, 94.38
3fxa_A201 SIS domain protein; structural genomics, joint cen 93.84
3etn_A220 Putative phosphosugar isomerase involved in capsu 93.75
2a3n_A 355 Putative glucosamine-fructose-6-phosphate aminotr; 93.33
1m3s_A186 Hypothetical protein YCKF; structural genomics, PS 92.28
1jeo_A180 MJ1247, hypothetical protein MJ1247; RUMP pathway, 91.51
2xhz_A183 KDSD, YRBH, arabinose 5-phosphate isomerase; lipop 91.03
3cvj_A243 Putative phosphoheptose isomerase; rossman fold, 3 87.89
2aml_A 373 SIS domain protein; 46906266, LMO0035 protein, str 86.16
3g68_A 352 Putative phosphosugar isomerase; SIS domain, doubl 82.28
3fkj_A 347 Putative phosphosugar isomerases; structural genom 81.71
3fj1_A 344 Putative phosphosugar isomerase; YP_167080.1, stru 81.7
3knz_A 366 Putative sugar binding protein; structural genomic 81.34
3eua_A 329 Putative fructose-aminoacid-6-phosphate deglycase; 80.39
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Back     alignment and structure
Probab=100.00  E-value=2.8e-64  Score=457.11  Aligned_cols=187  Identities=29%  Similarity=0.540  Sum_probs=176.8

Q ss_pred             ccHHHHHhcCceeccccCCCCCCCCCCcccccCCeEEecHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHH
Q psy13427         67 VKVKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKT  146 (268)
Q Consensus        67 v~l~~Ll~a~vHlGh~~~~~np~M~~yIyg~R~gi~IInL~~T~~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~  146 (268)
                      +++++||+||+|+||+++.|||+|+|||||.|+|+|||||++|+++|++|+++|.++++++|+||||||+++++++|+++
T Consensus         5 i~~~~LL~AgvH~Gh~t~~wnpkM~~YIyg~RngihIIdL~kT~~~L~~A~~~i~~~a~~gg~iLfVgTk~~a~~~V~~~   84 (256)
T 2vqe_B            5 ITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRME   84 (256)
T ss_dssp             -CCCSTTCSSTTCCCBSSSCCGGGSTTEEEEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSSSSTTTTTTT
T ss_pred             ccHHHHHHcCeeeccCcCCCCCccccceecccCCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCceecCCcccCcccchhhhh-------------------------------------------ccccCCCceeee
Q psy13427        147 AQDCQEFAHTRFWRQGMFTNSEKLF-------------------------------------------RAVTRLPDLVIL  183 (268)
Q Consensus       147 A~~~g~~~i~~rW~gG~LTN~~~~~-------------------------------------------~~~~~~Pdlviv  183 (268)
                      |+++|++|+++||+||+||||.+..                                           +.+.++||+|||
T Consensus        85 A~~~g~~yv~~RWlgG~LTN~~ti~~~i~~l~~le~~~~~g~f~~l~Kke~~~~~r~~~kL~k~lgGik~m~~~Pdll~V  164 (256)
T 2vqe_B           85 AERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFV  164 (256)
T ss_dssp             TTSSSCCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHTTSTTSSCSCHHHHTTHHHHHHHHHHHSTTGGGCSSCCSEEEE
T ss_pred             HHHhCCeeecCeeCCCcccCHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHHHHhhcCccccccCCCEEEE
Confidence            9999999999999999999998631                                           234589999999


Q ss_pred             ecCCCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHHHHHhhhhhhHhHHH
Q psy13427        184 TNTLTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLK  257 (268)
Q Consensus       184 ld~~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~aIl~gk~~r~~~~~  257 (268)
                      +||    .+|++||+||.++||||||+|||||||++|||||||||||.+||.|++|+|++||++|+.+|.+...
T Consensus       165 ~Dp----~~e~~Ai~EA~~l~IPvIaivDTn~dp~~VdypIP~NDds~~sI~Li~~~la~ai~~g~~~r~~~~~  234 (256)
T 2vqe_B          165 VDP----TKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSP  234 (256)
T ss_dssp             SCT----TTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEECCSCSSCHHHHHHHHHHHHHHHHTTTSCCCCSCT
T ss_pred             eCC----ccchHHHHHHHHcCCCEEEEecCCCCchhcceEeecCCchHHHHHHHHHHHHHHHHHHHhhhhccch
Confidence            996    7899999999999999999999999999999999999999999999999999999999998876543
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Back     alignment and structure
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Back     alignment and structure
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Back     alignment and structure
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B Back     alignment and structure
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli} Back     alignment and structure
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp} Back     alignment and structure
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus} Back     alignment and structure
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3 Back     alignment and structure
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A Back     alignment and structure
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3 Back     alignment and structure
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A Back     alignment and structure
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A Back     alignment and structure
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3 Back     alignment and structure
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str} Back     alignment and structure
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium} Back     alignment and structure
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A Back     alignment and structure
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3 Back     alignment and structure
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli} Back     alignment and structure
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125} Back     alignment and structure
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile} Back     alignment and structure
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2} Back     alignment and structure
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp} Back     alignment and structure
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 268
d2uubb1234 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus 6e-44
d2gy9b1218 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escheric 3e-43
d1vi6a_193 c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Arch 3e-41
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Thermus thermophilus [TaxId: 274]

 Score =  146 bits (370), Expect = 6e-44
 Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 39/222 (17%)

Query: 69  VKDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDG 128
           VK++ +A VH GH+    + +   YIY  R G  I DL ++ E L     F+  +A R G
Sbjct: 1   VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGG 60

Query: 129 IVLFVGQSAQNSLLIEKTAQDCQEFAHTRFWRQGMFTNS--------------------- 167
            +LFVG   Q   ++   A+        + W  GM TN                      
Sbjct: 61  TILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPE 120

Query: 168 ---------EKLFRAVTRLPDL------VILTNTLTTVLEPNP---AIGEAAKMCIPTVG 209
                     +L   + RL         +        V++P     A+ EA K+ IP + 
Sbjct: 121 IEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIA 180

Query: 210 IVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKA 251
           + D++ +P+L+ Y +PGNDD   +IQ         I++ +  
Sbjct: 181 LADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGG 222
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 193 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d2uubb1234 Ribosomal protein S2 {Thermus thermophilus [TaxId: 100.0
d1vi6a_193 Ribosomal protein S2 {Archaeon Archaeoglobus fulgi 100.0
d2gy9b1218 Ribosomal protein S2 {Escherichia coli [TaxId: 562 100.0
d1x94a_191 Phosphoheptose isomerase GmhA1 {Vibrio cholerae [T 96.61
d1tk9a_188 Phosphoheptose isomerase GmhA1 {Campylobacter jeju 95.54
d1x92a_194 Phosphoheptose isomerase GmhA1 {Pseudomonas aerugi 95.29
d1jeoa_177 Probable 3-hexulose-6-phosphate isomerase MJ1247 { 92.7
d1m3sa_186 Hypothetical protein YckF {Bacillus subtilis [TaxI 92.23
d1vima_192 Hypothetical protein AF1796 {Archaeon Archaeoglobu 90.37
d1nria_248 Hypothetical protein HI0754 {Haemophilus influenza 90.04
d1p3da196 UDP-N-acetylmuramate-alanine ligase MurC {Haemophi 89.36
d1ir6a_ 385 Exonuclease RecJ {Thermus thermophilus [TaxId: 274 84.55
d1j6ua189 UDP-N-acetylmuramate-alanine ligase MurC {Thermoto 80.8
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.4e-62  Score=439.39  Aligned_cols=185  Identities=29%  Similarity=0.530  Sum_probs=174.1

Q ss_pred             HHHHhcCceeccccCCCCCCCCCCcccccCCeEEecHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCChhhHHHHHHHHHH
Q psy13427         70 KDMFDAKVHLGHKIGSLDERMKPYIYGVRQGQIIFDLDQSAELLRDALNFVAHIAYRDGIVLFVGQSAQNSLLIEKTAQD  149 (268)
Q Consensus        70 ~~Ll~a~vHlGh~~~~~np~M~~yIyg~R~gi~IInL~~T~~~L~~A~~~I~~i~~~~g~ILfV~t~~~~~~~V~~~A~~  149 (268)
                      ++|++||+|+||+++.|||+|+|||||.|+|+|||||++|+.+|++|++++..+++++|+||||||+++++++|+++|++
T Consensus         2 ~~ll~ag~H~Gh~~~~wnpkm~~yIyg~rngihIIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~i~~~A~~   81 (234)
T d2uubb1           2 KELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAER   81 (234)
T ss_dssp             CCSSCTTSTTBCCCSCCCGGGGGGEEEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCCEEEECCSSSSHHHHHHHHHS
T ss_pred             hhHHhCCCcccCCcCcCCCCCccceecccCCcEEEcHHHHHHHHHHHHHHHHHHHhcCCceeEEeccHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceecCCcccCcccchhhhh-------------------------------------------ccccCCCceeeeecC
Q psy13427        150 CQEFAHTRFWRQGMFTNSEKLF-------------------------------------------RAVTRLPDLVILTNT  186 (268)
Q Consensus       150 ~g~~~i~~rW~gG~LTN~~~~~-------------------------------------------~~~~~~Pdlvivld~  186 (268)
                      +|++|+++||+||+||||.++.                                           +.+.++||+|||+||
T Consensus        82 ~~~~yv~~RWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~tkke~~~~~~~~~kl~k~~~Gi~~m~~~Pd~viv~d~  161 (234)
T d2uubb1          82 AGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDP  161 (234)
T ss_dssp             SSCCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHHSSTTGGGSCHHHHTHHHHHHHHHHHHSTTGGGCSSCCSEEEESCT
T ss_pred             hCCEEeccceeCCccccccccchhhhhhHHHHHHhhcCcccccchHHHHHHHHHHHHHHHhhccchhhhhcceeEEEecC
Confidence            9999999999999999998531                                           135678999999996


Q ss_pred             CCCCCCCCchHHHhhhhCCCccccccCCCCCCceeeeccCCCCchhHHHHHHHHHHHHHHhhhhhhHhHHHH
Q psy13427        187 LTTVLEPNPAIGEAAKMCIPTVGIVDSNCNPNLITYPVPGNDDTPSAIQYYCQVFKTAILKGKKAKQDTLKL  258 (268)
Q Consensus       187 ~~~~~~d~~aI~EA~~l~IPtIalvDTn~~p~~IdypIP~NddS~~SI~li~~lL~~aIl~gk~~r~~~~~~  258 (268)
                          ..|+.||+||.++||||||||||||||+.|||||||||||.+||+|++++|++||++|+..+.+.+..
T Consensus       162 ----~~~~~Ai~Ea~~l~IPvIaivDTn~dp~~vdypIP~NDds~~sI~li~~~l~~ai~~gk~~~~~~~~~  229 (234)
T d2uubb1         162 ----TKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPS  229 (234)
T ss_dssp             ----TTTHHHHHHHHHHTCCEEEEECTTSCGGGCSEEEESCSSCHHHHHHHHHHHHHHHHTTSSCCCCSCTT
T ss_pred             ----CccHHHHHHHHhhCCCEEEEeecCCCccCCcEEEECCCchHHHHHHHHHHHHHHHHHHhcccCccCCc
Confidence                78999999999999999999999999999999999999999999999999999999999876654433
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure